lowQualScore : 44 4 1 222 1 4 2 9999999999999999999999 55 2 1 22 1 22 4 22 44 44 1 44 11 333333333 1 2 11 2 44444 2 222 6666666666666666 3 2 1 4444444444444 1 333 1 22222 111 2222 1 1 1 3 1 1 2 33 1 1111 4 33 11 11 44444444 11111 11 1111 55555555 333333333 111 1 1 11 1 11 22 1111 11 11 11 333333333 1 222 3333333333333333333 11111 3333333333333333333 11 11 1111 22 333333 222222222222222 222 444444444 11 55555555555555 1111 333333333 6666666666666666666666666666666666666666666666666666 11111 111 11111111 1111 6666666666666666666666666666666666 1 11 555555
lowQualScore : 33 0 5 666 5 0 0 0000000000000000000000 4 55 0 5 55 5 22 3 0 4 77 77 33 5 22 2 88 666666666 5 0 88 0 66666 4 7 333 2222222222222222 0 3 7 0 3333333333333 3 111 7 7 3 0 33333 3 999 0000 0 0 4 0 0 0 3 0 7 2 7 11 0 8 8 0 5 7777 0 55 8 6 0 11 11 0 11111111 11 99999 1 11 8 7777 22222222 8 8 3 333333333 777 0 0 33 0 33 33 4444 44 11 3 0 11 8 444444444 6 555 8 0 0 5 8 4 4 8 3333333333333333333 00000 1111111111111111111 55 3 3 77 333 55 7 00 2 3 3 5555 88 3 88 4 55 444444 777777777777777 3 0 111 3 555555555 777 5 5 44 33333333333333 777 9999 1 000000000 5 7777777777777777777777777777777777777777777777777777 4 777 11111 4 2 4 111 777 22222222 4 55 55 5555 4444444444444444444444444444444444 666 4 1 55 4 4 9999 888888
lowQualScore : .. . . ... . . . ...................... . .. . . .. . .. . . . .. .. .. . .. . .. ......... . . .. . ..... . . ... ................ . . . . ............. . ... . . . . ..... . ... .... . . . . . . . . . . . .. . . . . . .... . .. . . . .. .. . ........ .. ..... . .. . .... ........ . . . ......... ... . . .. . .. .. .... .. .. . . .. . ......... . ... . . . . . . . . ................... ..... ................... .. . . .. ... .. . .. . . . .... .. . .. . .. ...... ............... . . ... . ......... ... . . .. .............. ... .... . ......... . .................................................... . ... ..... . . . ... ... ........ . .. .. .... .................................. ... . . .. . . .... ......
lowQualScore : 00 0 5 555 5 0 0 5555555555555555555555 0 00 0 5 55 0 55 0 0 0 55 55 00 5 55 5 55 000000000 5 0 00 0 00000 0 3 333 7777777777777777 0 2 8 0 2222222222222 3 000 3 3 2 0 88888 2 000 8888 0 0 0 0 0 0 2 0 0 5 5 00 0 0 0 8 0 0000 0 00 0 0 8 00 00 8 44444444 66 44444 4 00 0 0000 00000000 0 0 2 555555555 555 0 0 88 0 88 88 8888 00 00 8 8 00 0 888888888 0 000 0 8 8 7 0 0 0 0 0000000000000000000 00000 5555555555555555555 00 6 6 55 888 00 3 00 8 6 6 5555 00 6 55 0 55 444444 111111111111111 3 4 555 6 555555555 777 7 0 00 99999999999999 888 7777 7 777777777 7 6666666666666666666666666666666666666666666666666666 4 888 11111 4 6 4 000 000 22222222 0 55 55 1111 3333333333333333333333333333333333 666 0 2 55 0 4 4444 222222
consensus : ACTATGAGAA-TTTTTTA-TATCAATACATAAGGGATGTAAAGACATGTATACTATTCTTTATTAATAGAGAAAAGAAAAAACAAA--GTACTTCAANATT--AAAATAGGATATCATTCNACCTCTATAANGATGGANCAA-ANTTTTTTGAANCTTCCTTTT-AAAGTCACACAAGAATCAAAA-CCTCNACTGGTTACAATTTCNAATTTTACATAGAATAGTCTCCAACAAACCCCATATCTAATTTAAAAACTTCAAAGATT---AAACAAT--C--C--AGC--GT-AGCTTCTGCAGTAATG-AAATT-GA-----ATCNAA--TTGAA-CATCTATTTG-TTGAATGTCATTTAGTAAAAGAAATTT-GG----AATGATATTNG-AAGAG---TGG-CTTT-TANAT-AAATTTAGA-ATAT-CCGTATCC-TTTGAT-AGAACAAC-AATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATG-T-TTATAAAGTA--CA--AAATCTATTGACTTTTTGATAATCAAGCATTATA--TATTTT--CAAG-TAAATACAAAG----ACC-A---AA-CCAAC-ACTAAAT-ACAAGGGTTCTAAAAACAAT-------T-ATTGT---GG-AA-GA--ATCATGA-TG--GAAAAAA-TTT--T-ACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAAAAA-TTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TANCTTCCTAC--A-T--GACCAT-GTGC-CCC----TATAN-ATCTGTTC-CTTTCCC-TTT-C--TCCCA-TT-ACTTTACTC-TC---TCTA-CA-ATTTCCTCTTATCCCCCTGT-TC-TATCTGGG---------TTTT--ACC-CCCTTCTTTTTACTCT------CT-----CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TNTCCAAG-TAT---ATGTG---GTGT------A-TACA--G--TATAT-T-ATGATG--TAATT-TGAC--A----TG---T-GAT--TTTGT-T-ATGAAATG-TGAAGGT-TG-AAAT-AA----ATATTGCA-AATAATAAAAAAAAAA
Reference ( gi|6 ) : ACTATGAGAAATTTTTTAATATCAATACA-AAGGGATGTAAAGACAT-TATACTATTCTT-ATTAATAGATAAAAGAAAAAACAAACAGTACTTCAATATTTTAAAAT-GGATATCATTTCACCTCTATA-GAATGGAACAAGAATTTT--GAA--TTCCTTTTTAAAGTCACACAAGAATCAAAAACTTTCACTGGTTACAATTTTCAATATTACATAGAATAGT-TCCAACAAACTTCATATCTA-TTT--A--CTTAAAAGATT---AAACAAT--C--C--AGC-TGT-AGCTTC-GCAGTAATGTAAATT-GA-----ATC--A--TTGAA-CATCTATTTG-T-GAATGTCATTTAGTAAAAGAAATTT-GG----AATGATATTGG-AAGAG---TGG-CTTT-TATAT-AA-TTTAGA-ATAT-CCATATCCCTTTGATTAGAACAAC-AATA-T-TATTTGGGA----AGTTTACAATACAAGAAT--T-TTATAAAGTA--CA--AAATCTATTGACTTTTTGA-AATCAAGCATT-TA--TATTTT--CAAG-TAAATACAAAG----ACC-----A--CCAAC-ACTAAAT-ACAAGGGTTCTAAAAACAAT-------T-ATTGT---GG-AA-GA--ATCATGA-TG--GAAAAA--TTT--T-ACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAG-AAA---TTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TAACTTTCTAC--A-T--GACCAT-GTGC-CCC----TATAA-ATCTGTTC-CTTTCC--TTT-C--TCCCA-TT-ACTTTACTC-TC---TCTA-CA-ATTTTCTCTTATCCCCCT-T-TC-TATCTGGG---------TTTT--ACC-CCCTTCTTTTAACTC-------CT-----CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACA--G--TATAT-T-ATG-TGT-TAATT-TGA---A----T----T-GAT--TTTGT-T-ATGAAATG-TGGAAGG-TG-AAAT-AA----ATATTGCAAAATAATAAAAAAAAAATTG
gi|7 : ACTATGAGAA--TTTTTA-TATCA-TACA-A-GGGATGTAAAGACATGTATACTATTCTT-ATTAATAGA----AGAAAAA-CAA---GTA-TTCAATATT--AAAAT-GGA-ATCATT-CAC-TCTATA-TGATGGAACAA-AATTTTTTGAAC-TTCCTTTT--AAGTCACACAAGAATCAAAA-CTTCAACTGATTACAAT---CAAT--TACATAGA-TAGT-TCCAACAA--CTCATATCTAATTT--AAACTTTAA-GATT---AAACAAT--C--CCCAGCATGT-AGCTTCTGCAGTAATG-AAATT-GA-----ATC--AAATTGAA-CATCTATTTG-TTGAATGTCATTTAGTAAAAGAAATTT-G-----AATGATATTGA-AAGAG---TGG-CTTTATATAT-AAATTTAGA-A-ATACCATATCC-TTTGAT-AGAACAACCAATA-T-TATT-GGGA----AGTTTACAA-ACAAGAAT--TGTTATAA-GTA--CA--AAATCTATTGACTTT--GATAATCAAGCATT-AT--TATTTT--CAAG-TAAATACAAAG----ACC-----AA-CCAAC-ACTAAAT-ACAAGGGTTCTAAAAACAAT-------T-ATTGT---GG-AA-AG--ATCATGA-TG--GAAAAAA-TTT--T-ACTATT-TAAA---AATGTAA-T--ATACAGAA-TTTG-A-------AAAAAACTGGCAG-AAAAA-TTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TT---CTT-AC-TA--CTTCTAC--A-T--GACCAT--TGCGCCC----TA-AA-ATCTGTTC-CTTTCC--TTT-TCTTCCCA-TTTACTTTACTC-TCC--TCTA-CA-ATTTTCTCTTATCCCCTT-T-TC-TATCTGGGT--------TTTT--ACC-CCCTTCTTTTAACT--------CT-----CTCTCTTTCTCTC---TCTTCTGTA-TTAAAAAAACAA---------CA--TCA----------C-T------TACTT----------------------TAT---TATA-GTTACAAT-----TCG-TTT-CAAG-TAT---ATGTG---GTGT------A-TACA--G--TATAT-T-ATGATG--TAATT-TGAC--A----TG---T-GA---TTTGT-A-TTGAAATG-TG--AGGTTG-AAAT-AA----ATA-TGCA----AATAAAAAAAAAA
gi|5 : ttgcttatggacattatacccagtACTATGAGAA-TTTTTTA-TATCAATACATAAGGGATGTAA-GACATGTATACTATTCTTTATTAATAGAGAAAA----AAACAAA--GT-CTTCAAAATT--AAAATAGGATATCATTCAACCTCTATAAGAATGAACCAA-ATTTTT--GAAACTTCCTTTT-AAAGTCACACAAG-ATCAAAA--CTTCACTGGT--CAATTTCAAATTTTACATAGAATAGTCTCCAACAAACTCCATATCTA-TTTAAA--CTT--AAGATTAAAAAACAATCCC--C--AGC-AGTGAGCTTCTGCAGTAATG-AAATT-GA-----ATCCAA--TTGAAGCATCTATTTGTT-GAATGTC-TTTAGT-AAAGAAATTTGGG----AATGA-ATTTG-AAGAG----GG-CTTT-TATATAAA-TTTAGA-ATAT-CC-TAT-CCTTTGA-TAGACAAAC-AATA-T-ATTTTGGGA----AGTTTACAA-ACAAGAATG-T-TTAT-AAGTA--CA--AAATCTATTGAC--TTTGATAATC-AGCATA-TATTTATTTT--TCAG-TAAATACAAAG----ACC-----AACCCAAC-ACTAAATAACAAGGGTTCTAAAAACAAT-------TAATTGT---GGAAA-GAATATCATGATTG--GAAAAAATTTT--T-ACTATT---AAC--AATGT--AT--ATACAGAATTTTG-----------AAAACTGGCAGAAAA---TTTGT-GA-GTGTTGTGATT-CAAAT-G-TACA-C-TGA------TA----T-----TTTT-----TT--TT-------------TCTTT--CTT-ACTTAACTTCCTAC--A-T--GACCATGGTGC-CCC----TATAATATCTGTTC-CTTTCCCTTTT-C--TCCCATTT-ACTTTACTCTTC---TCTA-CA-ATTTTCTCTTATCCCCCTGT-TCTTATCTGGGT--------TTTT--ACCGCCCTTCTTTTAACTCT------CT-----CTCTTTC-CTTTCCATCCTTCTGTA-TTATAAAAAC-A---------CATTTCA----------CAT------TG-TA----------------------TATA--TGTA-GGT---AT-----GCATTTTCCAAGTTATATAATGTG---GT-T------ATTACA--G--TATAT-T-ATGATG--TAATTATGAC--A----TG---T-GA---TTTGT-T-ATGAAA-A-TGTAAGGTTG-AAATAAA----ATATTGCA----AATAAAAAAAa
gi|29 : TTCAAAGAAT---AGAAAAT--CACC--A---------CTTCTGCAGTAATG-AAATT-GA-----ATCA-A--TTGA
gi|10 : aact-GTAGTAA-GTAAATTTGAGGCGTATTTAA--TTGAA-CATCTATTTG-TTGAATGTCATTTAGTAAAAGAAATTT-GG----AATGATATTG--AAGAG---TGG-CTTT-TAAAT-AAATTTAGA-ATAT-CCGTATCC-TTTAAT-AAAACAAC-AATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATG-T-TTATTAAGTA--CA--AAATCTATTGAC--TTTGATAATCAAGCATTATA--TTTTTT--CAAG-TAAATACAAAG----ATCGACCAA--CCAAC-ACTAAAT-ACAAGGGTTCTAA
gi|9 : acttgaattatttatttatttatacgtgcgctacagtgaaaatcccatctctacattacgAAGAA--TT-GGTGCGAATGATATTTGCAAGAGAGATGGTCTTT-TAAAT-AAATTTAGATATAT-CCACATCC-TTTGAT-AAAACAAC-AATAATATATTTGGTATAACAGTTTGGAA--CAAGAATGTT-TCATAAAGTAGCCAGAAAATG-ATTGACTTTGATA-AGTCA-GCATT-TA--TATTTTTTCAAGATAAATACAAAAGCGAACCCAT--A--CCAACCACTAAAA-ACAAGGGTTCTAAAA-TAATGCGCGAAT-ACTATCTGGA-AA-GA--ATTATGA-TGTGGAATGG--TTTATT-ACTATTTAAAACTCGATGTGAACTCATACAGAA-TTGG-AGAAAGGAAAAAAACTGGCAG-AAAAAGTGTGTTGATGTGTTGTGATTGCAAAT-GATACAAC-TGCATAATATA----T-----TTTT-----TTCTTC-------------T-TTT--CTTTAC-TACTTTTCTACTTA-T--GACCAC-GTGC-CCC----TATAA-ATCTGTTC-CTTTCCT-TTT-C--TCCCATTT-ACTTTACTC-TCTCGTCTACCA-AATTCCTCTTACCCCTCTGT-TC-TATCTG
gi|8 : ttccatccatgtgttttgagtagtgaaaacttcactgcATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATG-T-TTATAAAGTA--CA--AAATCTATTGACTTT--GATAATCAAGTATTATA--TTTTTT--CAAG-TAAATACAAAG----ACC-----AA-CCAAC-ACTAAAT-ACAAGGGTTCTAAAAACAAT-------T-ATTGT---GG-AAAGA--ATCATGA-TG--GAAAAA--TTT--TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAG-AAA---TTTGT-GATGTCTTGTGATT-CAAAT-G-TACA-C-TG-------TATTTTT-----TTTT-----TT--TC-------------T-TTT--CTT-AC-T-ACTTTCTAC--A-T--GACCAT-GTGC-CCC----TATAA-ATCTGTTCTCTTTCCT-TTT-C--TCCCATTT-ACTTTACTC-TC---TCTA-CA-ATTTCCTCTTATCCCCTG-A-TC-TATCTGGG---------TTTTTCTCC-CCCTTCTTTTTACTCTCTCTCTCT-----CTCTTTCTCTCTC---TCTTCTGTA-TTAAAAAAACAA---------CA-TTCA----------CATTGTATGTG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACA--G--TATA--T-ATGATG--TAATT-TAAC--A----TG---T-GA---TTTGTAT-ATGAAATG-TGAAGGT-TG-AAAT-AA----ATATTGC-AAATAAGAAAAAa
gi|16 : T-AAAAC--AATGCAAAT--ATACAGAA-TTTGAA-------AAAAAAATGGCAGAAAA---TTTGT-GATGTGTTGTG-TT-CAGAT-G-TACA-T-TG-------TA----TAACTGTTTCTGAGATT--TCAAAAAGAAATTTAT-TTTTGCTT-AC-T-ACCTCCTAC--A-T--GACCAT-GTGC-CCC----
gi|19 : tttgc-CAAAT-G-TACA-C-TG--------A----T-----TTTT-----TT--CCC------------T-TTT--CTT-AC-TA-CCTCCTAC--A-T--GACCAT-GTGC-CCC----TATAT-ATCTGTCC-CTTTCCT-TTT-C--TCCCA------TTTACT---------------ATTTCTTCTTATCCCTCTGT-TC-TATCTGGG---------
gi|21 : -CAAAT-G-TACA-C-TG--------A----T-----TTTT-----TTC-CC-------------T-TTT--CTT-AC-TACC--TCTAG--AGT--GACTAT-GTG--CCC----TATAT-ATCTG-TC-CTTCCT--TTT-C--TCCCA-TT------------------TA-CATATTCT-TCTTATCCTCTG-T-TC-TATCTGGG---------GTTT--ggttt
gi|20 : AAAT-G-TACA-C-TG--------A----T-----TTTT-----TTC-CC-------------T-TTT--CTT-AC-T-ACCTCCTAG--AGT--GACCAT-GTG--CCC----TATAT-ATCTGTCG-CTTCCT--TTT-C--TCCCA------TTTACT---------------ATTTCTTCTTATCCTCTG-T-TC-TATCTGGG---------TTTT--
gi|15 : AAATCG-TACA-CATG--------A----T-----TTTC-----TT--TC-------------CCTTT--GTT-AC-TACCT--CTAC--A-TTTGAC-AT-GTGC-CTCACCATATAT-ATCTGTGC-CTTTCCCATGT-C--TCC------A-TTTACTA-TT---TCT--------TGCTTTCACCTCTGT-CATC-TATCTGGGAGGTTTGTTTTCT--ACA-CTCT-CTCT---CTC-------CTGACGACTCTTTCTCTCTC---TCT
gi|14 : AAATCG-TACA-CATG--------A----T-----TTTC-----TT--TC-------------CCTTT--GTT-AC-TACCT--CTAC--A-TTTGAC-AT-GTGC-CTCACCATATAT-ATCTGTGC-CTTTCCCATGT-C--TCC------A-TTTACTA-TT---TCT--------TGCTTTCACCTCTGT-CATC-TATCTGGGAGGTTTGTTTTCT--ACA-CTCT-CTCT---CTC-------CTGACGACTCTTTCTCTCTC---TCT
gi|30 : -TTT--CTT-AC-TA-CTTTCTAC--A-T--GACAAT-TTGC-CCC----TATAA-ATCTGTTC-
gi|11 : -CTTTCC--TTTTC--TCCCA-TTTACTTTACTC-TC---TCTA-CA-ATTTCCTCTTATCCCCCTGT-TC-TATCTGGG---------GTTT--CCC-CCCTTCTTTTTACTCT------CT-----CACTTTCTCTCTC---TCTTCTGTATT--AAAAAACAATC-------CA-TT-G----------TATG-----TG-TA----------------------TATA--TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTATACAGTAA-TACA--G--TATA--T-ATGATG--TAATT-TGAC--A----TG---T-GA---TTTGT-T-ATGAAATG-TGAAGGT-TG-AAAT-AA----ATATTGCA----AATAAAAAAAAA
gi|27 : CTCTTATCCCTCTGT-TC-TATCTGGGGG-------TTTT--CCC-CCCTTCTTTTTACTCTTTTT--CT-----CTCTTTCTCTCTC---TCT
gi|24 : cCTC---TCTTCTGTATT--AAAAAACAA---------CA-TTTA----------------------------------------------------TGTA-GGT---AT-----TCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TTCA--GTTTATAT-G-ATG-----TAATT-TGAC--A----TG---T-GAT--TTctc
gi|18 : TC---TCTTCCATAT----AAAAATTA---------CA-TTCAATTATTGCATCAT------TA-TG----------------------T-T---TGTA-TAT---ATATGTAGCA-TATACAAG-TAT---ATGT-----TGT------A-CACC--G--TATATAC-ATG-CAT-GAAAT-CCA---ACAAGT----TGGAT--TTTAT-G-GCAAAAT--TGTAAGC-TG-gt
gi|13 : tttttatCTATATTTAAAAAAAAAAACTTATTTACA-TTCA----------CAT------TG-TGATGGTGTATGATACAATTTGATTATAGGTGTAAGGT---AT-----GCA-TATCCAAG-TATG--ATGTGCTTGTTT------A-GACAGGG--TATAT-TGATA-T-T-CAATT-TGATTTA----T----T-GTTGATATGT-TGATGAAATATTGAAAGG-TGAAAAT-AGAAATATATTGCA----AATAAAAAGAAAA
gi|25 : A----------TAT------TA-TA----------------------TAT------A-TGT---AA-----GCA-TATCCAAG-TAT---ATGTG---GTAT--------TACA--G--TATA--T-ATGATA--TAATT-TGAT--A----TG---T-GTA--TTTGT-T-A
gi|17 : ctcacaatgtatgatatat------TA-TA----------------------TAT---AGTA-AGC---A--------A-TATCCAAG-TAT---ATGTG---GTAT------A--ACA--G--TATAT---ATG--ATATAATT-TGA---A----TATGTT-GAT--TTGTT-T-GAGAAATG-TGAAGGT-TG-AAAT-AA----A-ATAGC--AAT--TAAAAAAAAA
gi|26 : acaacatcacaatgtatgtatatatatata---ATGTG---GT--------A-TACA--G--TATA--T-ATGATA--TAATT-TCAT--A----TG---T-GA---TTTGT-A-ATGAAATG-TGAAGGT-TG-AAAT-AA----ATATTtaa
gi|28 : TAT-T-ATGATGT--AATT-TGAC--A----TG---T-GAT--TT-GT-T-ATGAAATG-TGAAGGT-TG-AAAT-AA----ATATTGCA----AATAAAAAAAAAatata
gi|31 : TGAAATG-TGAAGGT-TG-AAAT-AA----ATATTGC--AAT--TAAAAAAAAA
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): CCAACTTCTATGGATGACATTATTAGAGTCCTAGATTACTTGGCAATAATTTCAGGTCTAAGGATAAATTTTTCAAAGACAAAAATGGTGTGGATAGGTAGTAAAACATTTTCAAAGGAGGTTTTCCATCATTCAAGGTGGAAATTTGACTGGAACAATGAAACATTGGATTTACTAGGGATAAGATTCAACAGTAACTTACAAGAAATGGTTGAAATGAATTATAAGACTAAATTAAAGGAAATTAAAAAGGTTATGATGCAGTGGAATAGTAGAAATCGTACTCCTTTAGGAAGGCTAACAGTAATAAAGACACCAAAATTGAATCACTCATACTTACAATAGGAAATCATTTGTGCTTTTGAAAGGGATCTTTATAACTTTCTTTAGAATAATAAAACTCATATAAGGTTAAGAAAAATATCATGATCCAAGAATGGTGGTATAAAAAAGGCTGATTATAAGGAATTTATCACTGGTCTTTTAAAGCATGGATTTGACGTATTCTACATTCAAATGCAAAATGGACAAAATTATTAGGTGCAGAATTAATTACTGGTATAGATAAGCTTTGGAGATTTGGAATAGATTATATTAATAATTCAAGTGTAAAAAAAATACCAACAGCTTTTGGAAAGAAGTGTTTCAGAGCTGGTCAAAGATGAATTCTGTAAATGCTGAAACCAACCCAGATTTCTTTTGTGATCATATTTTTTATAATCCAAATATTACTGTCGGTGGAAAATCAGTATTTTTTGAAAACTTTTAAGAATTCAGGCATTGTATTTATTTCTGACCTTCTTCATGAAAATGGTAATTGGTACAAGCTTGATAATATATACAAATTGTTTTGAAAGCCAAAATGAATTTTATAGAATATGCAGGTTTAAAGCAAGCAATTCAACAAAGACAAGTTCTTTTACAAGACAAAATAAGGGCTTTAAGGCCACATTTGCCTATTATTCCATCTACTATGTCAATATATTTAAAAAACATAATAGGTTGTGAAGATATGTATAAGCTATTGATAAACCATAAAGTAGCCAAACTTAAATCCATATCATAATGTGAAGATTTTCAGAGTTAGAATGGAATTTTTTTTTAGAACTTCCTTTTAAAACAACCCAGGAATCTAAATCACACTGAGTGGATGCAGTTTCAAATTTTACTCAGATATTCCATGTAATTGCTATCTACATAAGCTTTGAATTGTTGATTCCCCAATCTGCACTTTTTGTAAGAGAGACTTGGAAACTATTGATCACGTTTTTGTAGAATGTCCATGTGTTAAAGGGAGATCTGGTGTGGAATTGAAGAATGGTTTAATGAAAAACTGGACATGCATTAGCTTTCACAGACAAGCAATTCTCCTTGCAAAATTTGTATAAGAATATACATAGGGTGGAAAATTTAATAATTCTTATAATAATGCAATACATTTATACCAATCAATTTTCAAGAATAAGTACATTAAGTATAGAAGCATCCCCCCAAAAAATTGTCATCCACAGAATCACAGTTGAGAAACTTTTGTTACTGAAAAACTGCAGCTATAGGGAGTTTGAAAGATACTGGCAAAGGATCTATGATAAAATTGACCA
Unaligned ( gi|2 ): CCTACTTCCATCGTAAAACATTACATGTATAAAAATCAACGATACTTTGCAATGATTTCAGGATATAAGGTTAAAATTCAGTGATTTCAGTCTTAGATGATGGATTTTCCAAAGACAAAAATTTGTCAAAGTTGTTCCATCTACAAAAGGTGTTGACTGGAACAATAAAAACCTTTGATTTTGCTAGGTATACGATTCCAGCATTGATTTACAAGGAAAGTGGTGATAAAGTATAAGATGAATGCAGGAAATCTAAAAAAAAAAAAAAAAAAAAAAAACAAAGAAGAAGAAAAAAAAAAAAGGTTATGATGTAGTGGATAAGTCTTTTCTCCTCTAGGTAGACCAACAATAATAAAGAAAACCATTGATTTCCAAATGAATCATTTTTAATTACTTACAATTCCAAACTCTAGAGAGAAAAAGCGTGAAACTGGTTTTTAACAAGGATTCTAGTAAAACTTCTTTCGAACTAAATAAAACTCGTAAAAGAAAAAATAGTCATAATCATTAGAATATGCAAATGGTATAAAAAATTACTGTAAGGAAATTTCTGGCACAGGGATCAGCTTATTCTACATCCAGAAATACAAAAATGGGACAAATACCAGGTGATAGAAATTAATACTGTGTAGATAAACTTGGAGAAGGGAAAGATTATTCATGATTGGAGGTGTTAAAATAATCCAACAGCTTTAGATGAAGTATTTCAGAAACTGGTCAAATAAATTCTGTAAAAGTGAAAATACAACCGAGATTTTCTTTGGATCTTCATCATTCAGAATATTACGTCGGTGGAAAATCAGTATTCTTAAAAAGCGTCAGGTATGATTCAGGCAGTGTAAGTTCATTTATACCTTGAAAAATGGTTTGGTACAAGCTCATTATATACAAAGATGATTTGAAATCCAAAATATTTAAAAAGGCATCTGAGATAAAGAGAGGCAATTTCAAAAAAGACAAATCCTTAACAAGACAATGATTAGAAGACTGGTAATGCTACATTGCCATCACTGCTATCAATCATAACATACAGGTATTTCAAAAACAAAAAGATGTAAAATTCATAAAAATTAAATAGCCAAAAATTACATCCATATCAAAATGGAAAAAAAACAACCAGAAACAGGACATTTTCATGAGTTCGAATGGAAAAAACAAAAATATTCTTGAACCTTGTTTTCAAAGACACACGGAACTAAATAGATAGTGGATGCTACGTCACATGTACTATTCCATGTAATTACTATCTTACAATAAACTAGAATCTGTGATCCTTCAGTCTGCGACATGTTGTAAGAGAACTTGGAGAACTTTGATCAAATTTTTGTAGAATGCCCTTGTTGTTGAAATAAAGAATGACTTTATGAAAAAGACTGGATCAGGCAATATCGCGTTTGAAACAAACTAAT
Unaligned ( gi|3 ): TTTTCCTACTTCCATCGATGACATTACATGTATTAAAATCATACATTACTTTGCAATGATTTCAGGTCTAAGGTTAAAATTCAGTGATTTCAGGTCTAATGATGGATTTTTCAAAGACAAAAATTTTCAAAGGTTTTCCATCATACAAGGTGGTTTGACTGGAACAATAAAACCTTTGATTTGCTAGGTATAAGATTCAGCATTTATTTACAAGAAATGGTGGGTATGAAATATAAGACTAAATGCAGGGAAATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTTATGATGTAGTGGATAAGTCTTTCTCCTCTAGGTAGACCAACAATAATAAAGAAACCATTGATTCCAAAATTGAATCATTTATAATACTTACAATTCCAAACTCTAAAGAGAAAACTAACTGTTTTTAAAAGGGATCTCTATAACGTTCTTTCGAATAATAAAACTCGTAAAGAAAAATATCATAATCCAATTAGAATATGCTAATTATGGTATAAAAATTACTGTAAGGAATTTCTGGCAACATGGATTCAACTATTCTACATCCAAATACAAAATGGACAAAATTACCAGGTGTAGAATTAATTACTGGTGTAGATAAACTGTGGAGAAGTGGAATAGATTTTATTCATGATTTGATTTTAAAAATATCAACAGCTTTTAGATAGAAGTATTTCAGAACTGGTCAAAGATAAATTCTGTAAAAGCTGGAAACAACCGAGATTTTTCTTTTGTGCATATCTTTCATCATTCAAATATTACTGTCGGTGGAAAATCAGTATTTCTTAAAAGCGTTCAGTATGATTCAGGCATTGTATTCATTTATGACCTTGATGAAAATGGTAATTGGTACAAGCTCGATTATATACAAAATGATTTGAAATCCAAAATGAATTTTAAAGGCATATGAAGGATTAAAGAGAGCAATTCAAAAAAGACAAGTTCTTTTACAAGACAATGATTATAAGGACTGTAAAGCTACATTTGCCTAATCCATCTACTATATTCAATACATACATGTATTTCAAAAACAAAAAAGATTGTAAATTGATAAAAATTAAAGTAGCCAAAATTAAATCCATATCAAAAATGGAAAAAAACAACCAAAAAACAGGACATTTTTCAGAGTTCGAATGGAAAAAAATATTTTTGAACTTGTTTTCAAAACAACACAGGAATCTAAATAATAGTGGATGCAGTCACATACTATTTCCATGTAATTACTATTTACATAAACTTAGAATTGTTGATTCCTTCAGTCTGCACATTTTGTAAGAGAAACTTGGAAACTATTGATCAAATTTTTGTAGAATGCCCTTGTGTGTGGAAATAAAGAATGACTTTATGAAAAACTGGACAGGCATATCGCTTTGATAAACAAATAA
Unaligned ( gi|4 ): TTCGAACTCATCTCTGGGATTTTTATATATTAAACGACTTGACTTTCAACTTCGGAACATCATAAACAACTGGATAAAAACTTTTTAATATGAATATAATATTGTGTCATTACAAATTGGATAAACTGCAGAAATATTTTCAACCCACAAAGAGGCCTGTAGCAAGGCGAATCCATAATCACCTCTCTTTTTTGCTCTGTGCAGAAGTCTCGGAATAATATAAAAATAATAAAGATAAAAAAGGAATAACAATTGAGGGGAGGAATATAAATTATGCCAGTATGGCGATGATAACTTCATTATTCTCAGATGGATGCACGCCGAATCCATGGTTGTTCATCCTTAGAGAGAGATTATTTGGCTATATGTTTCCGGTCTGTAGATAAAATTTCTCCAAAACTAAAATGGTATGGATTGGCAGTAAATAAAATTTCAAATGAAGGTTTCTATCTATTCCAGATGGAAACTTTGATGCGAAAAATCCAACATTATGATCTTTGGGGATTAAAATTCTCTGTAGACTTAATAGGAATGAATTGAATTGAACTCATAACTCCAAGACTACTTGAAGGTTAAGAACCTCAAAATCGATTGGAAATGTAAGAAAAGTGACCTCTATCGGAAGACTAGTTGTAAATAAAAACTTTAAATTAAATACCAAAGATGAACCATTTGATACTTTGCTGATATACAAATCCTGACCGCAGAATATATAATAATATTTGAAAGACAAGAAAAATTTTTAAGCTATTGATGGGGAAGTCAAATTCATAAAACTCAAAAGAATATACATATCATTCATGAATTAAATGGAGGATTAAAATTGAACAGACTTCCAGAATTTATTACAGCTTTAAAAATCAAGTGGTATAAGAATTCTTCAATCAATTCAATAATGATTACATTTAACTGAGGGCAGAGTTGACAACAAATTCAATAATTTATGGTTGGAGGGACTGACTACAATCCTTACATAGTAAAACAACCAATAAAAATTTTTGGAAAGAGGCTCGTTTTTCCAGCTGGATTCAA
Unaligned ( gi|12 ): CTCAATGGTGATGAATTGAGTTGACAAGTTGTTAATGACCTCAATTAAACCTCAAAAGTAAAACTACCGTATTGAGAAAGATTTATAACACTCATTATATCGATGGAAATTAAGAAAGCTGACCCTATCGGAAGGACTGAGTTGTAATGTAAACTACTTTGATTATACCAAGATGAACCCCATTATAGATTACTATTACCAATCTGACCCATGAACTTAGTGTATATTTACAAAAAAGAT
Unaligned ( gi|22 ): AAAGGAAGTGTTCTATCATACAAGGTGGAAATTTGAATGAAATAAAACCTTTGAATTACTCGGGATAAGATTCAACATTAATTTACAAGAAATGGTTGAAAT
Unaligned ( gi|23 ): ATTTCAAATGAAGTATTTCATCATTCCAGATGGAAACTTGACTGGAAAAATACAACATTTGATCTCTTGGGGATAAAATTCTCTGTAGACCTTAATGGAAT
Alignments
lowQualScore : 1 1 1 1 1 11 2 3333333 333333333 111111 1 2222222222 222 111 1111 3 2 1 22222 1 1 44444444444444444444444 111 6666666666666 11111 1 111 222222 2222 1 111 111 1 1111 22 111 111 11111 111 2222222 111 1 1111111 1 22222222 11 333333333333333 11111 1111 11 333333 333333333333 111 1111111 33333333 111 222222222 5555555555555555555555555555555555555555555555555555 11111 111111 111 3
lowQualScore : 0 0 3 0 3 66 5 0 3 2 33 3 1 2 0000000 0 666666666 222222 5 3 1111111111 3 333 1 8 222 0 7777 2 8 0 0 1 8 2 0 0 11111 3 1 333 5 2 9 9999 3 55555555555555555555555 444 0000000000000 0 6 6 99 66666 4 6 222 6 000000 1 6 0000 3 4 6 111 6 6 000 6 1 6 6 99 6 6 3 3 5 5 0 5 2222 5 3 5 1 0 77 77 5 00 5 8 555 1 2 000 5 000 77 88888 5 77 5 000 1 1111111 6 111 6 6 6 99 777 0 99 6 5 888 00 77 5 5 8888888 2 33 5 5 7 3 3 7 88888888 7777 99999 99999 22 111111111111111 44 3 3 44444 44 6 99 1 3 3 4444 44 1 3 22 3 3 222222 333333333333 6 77 88 3 44 99 77 333 4 4444444 9999 66666666 777 222 666666666 5 1111111111111111111111111111111111111111111111111111 4 777 00000 1 4 777 3 3 666 5 000000 3 55 555 3 3 44 3 3 77 5 44 99 555 3 55 8888 4 4 1
lowQualScore : . . . . . .. . . . . .. . . . ....... . ......... ...... . . .......... . ... . . ... . .... . . . . . . . . . ..... . . ... . . . .... . ....................... ... ............. . . . .. ..... . . ... . ...... . . .... . . . ... . . ... . . . . .. . . . . . . . . .... . . . . . .. .. . .. . . ... . . ... . ... .. ..... . .. . ... . ....... . ... . . . .. ... . .. . . ... .. .. . . ....... . .. . . . . . . ........ .... ..... ..... .. ............... .. . . ..... .. . .. . . . .... .. . . .. . . ...... ............ . .. .. . .. .. .. ... . ....... .... ........ ... ... ......... . .................................................... . ... ..... . . ... . . ... . ...... . .. ... . . .. . . .. . .. .. ... . .. .... . . .
lowQualScore : 0 0 2 0 2 55 5 0 2 5 88 2 5 5 4444444 8 666666666 000000 4 8 0000000000 8 666 0 0 666 8 0000 2 0 8 8 4 0 0 5 0 55555 2 0 888 5 5 0 8888 2 88888888888888888888888 000 8888888888888 8 7 7 22 77777 0 7 777 7 000000 7 7 8888 5 0 7 777 7 7 222 7 7 7 3 22 7 7 2 3 7 7 1 0 1111 7 0 7 7 1 99 99 0 33 7 7 999 7 1 000 7 000 99 99999 7 99 7 000 0 7777777 7 777 7 7 7 22 555 0 22 7 7 666 33 99 7 7 6666666 0 77 7 0 3 6 6 3 77777777 7777 11111 11111 33 888888888888888 66 3 3 33333 66 7 22 8 3 3 2222 66 2 3 00 6 6 333333 777777777777 2 77 55 1 22 22 99 999 4 7777777 4444 22222222 000 888 999999999 0 1111111111111111111111111111111111111111111111111111 0 000 00000 0 0 000 6 6 444 7 555555 6 00 222 3 3 66 3 3 99 4 66 99 222 6 00 5555 0 4 8
consensus : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAAAGACATGTATA--CTATTCTT-ATTAATAGA-AAAAGAAAAAACAAA--GTA-CTTCAANATT--AAAATAGGATATCAT----TCA-ANCTCTATAGAGATGGAACAA-AAT-TTTTT----GAA-CTTCCTTTT-AAAGTCACACAAGAATCAAAA-CTTC-ACTG-GT---TACAATTTCAAATTTTACATAGAATAGTCTCCAACAAACTTCATATCTA-ATTTAAAA-CTT-TAAA-----GATTAAA---CAATC--CCCAGCA-GT-AGCTTCTGCAGTAA-TG-AAATT--GA-----ATC-AATTGAA-CATCTATTTGTT--GAAT-GTC-A----TTTAGTAAAAGAA-ATTTGG----AATGATATT-G-AAGAG---TGG-CTTT-TAN--ATAAATTTAGA-ATAT-CCGTATC--C-TTTGAT-AGAACAA-CAATA-T-TATTTGGNA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGATAA-TCAAGCAT-T-ATATNTTT---TCAAG-TAAATACAAA---GA--CCA---AACCAAC-ACTAA--ATA-CAAGGGTTCT---AAAAACAAT-------TA-TTGT---GG-A-A-GAAT--CATGAT-G-GAAAAANTTT--T-ACTATT-AAAAC--AATGTAAAT--ATACAGAATTT-G-A-------AAAAAACTGGCAGAAAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-ACT-ACCTTCCTAC--A-T--GACCATG-TGC-CCC----TATAN-ATCTGTTC-CTTTCCT-TTT-C-TCCCA-TT-ACTTTACTCT-C---TCTA-CAATTTCCT-CTTATC-CCTCTGT--TCT-ATCT--GG--G--TTTT--NCC-CCCTTCTTTTTA------CTC----TCT--------CTCTTTCTCTCTCT---CTTCTGTATTTAAAAAAACAA---------CATT-CA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCATTT-CCAAGT---AT-A-TGTG---GTGT------AT-ACA--GTATAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T-TGT-T-ATGAAA-TGT--GAAGGTTGAAATAA----A-TATTGC-AAATAA-AAAAAAAAAA
Reference ( family-2753 ) : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAAAGACATGTATA--CTATTCTTTATTAATAGAGAAAAGAAAAAACAAA--GTA-CTTCAANATT--AAAATAGGATATCAT----TCN-ACCTCTATAANGATGGANCAA-ANT-TTTTT----GAANCTTCCTTTT-AAAGTCACACAAGAATCAAAA-CCTCNACTG-GT---TACAATTTCNAATTTTACATAGAATAGTCTCCAACAAACCCCATATCTA-ATTTAAAAACTT-CAAA-----GATTAAA---CAATC--C--AGC--GT-AGCTTCTGCAGTAA-TG-AAATT--GA-----ATCNAATTGAA-CATCTATTTGTT--GAAT-GTC-A----TTTAGTAAAAGAA-ATTTGG----AATGATATTNG-AAGAG---TGG-CTTT-TAN--ATAAATTTAGA-ATAT-CCGTATC--C-TTTGAT-AGAACAA-CAATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGATAA-TCAAGCAT-T-ATATATTT---TCAAG-TAAATACAAA---GA--CCA---AACCAAC-ACTAA--ATA-CAAGGGTTCT---AAAAACAAT-------TA-TTGT---GG-A-A-GAAT--CATGAT-G-GAAAAAATTT--T-ACTATT-AAAAC--AATGTAAAT--ATACAGAATTT-G-A-------AAAAAACTGGCAGAAAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-ACT-ANCTTCCTAC--A-T--GACCATG-TGC-CCC----TATAN-ATCTGTTC-CTTTCCC-TTT-C-TCCCA-TT-ACTTTACTCT-C---TCTA-CAATTTCCT-CTTATC-CCCCTGT--TCT-ATCT--GG--G--TTTT--ACC-CCCTTCTTTTTA------CTC----TCT--------CTCTTTCTCTCTCT---CTTCTGTATTTAAAAAAACAA---------CATT-CA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCATNT-CCAAGT---AT-A-TGTG---GTGT------AT-ACA--GTATAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T-TGT-T-ATGAAA-TGT--GAAGGTTGAAATAA----A-TATTGC-AAATAATAAAAAAAAAA
gi|1 : ACTATGTCAA-TATATTTA-AA--AA-ACATAATAGGTTGTGAAGATATGTATAAGCTAT-------TGATA---------AACCATAAA--GTAGC--CAAACTT--AAATCC--ATATCATAATGTGA-AGATTTTCAGAGTTAGAATGG-AAT-TTTTTTTTAGAA-CTTCCTTTT-AAAACAACCCAGGAATCTAAA-TCAC-ACTGAGTGGATGCAGTTTCAAATTTTACTCAGA-TA--TTCCATGTAATTGC-TATCTACAT----AAGCTT-TGAATTGTTGATTCCC---CAATC--T-------GC-ACTTTTTGTAAGA---G-AGACTTGGA-----AACTA-TTGAT-CACGTTTTTGTA--GAAT-GTCCA----TGTGTTAAAGGGAGATCTGG----TGTGGAATT-G-AAGAA---TGG---TT-TAATGAAAAACT--GG-ACAT---GCATTAGC-TTTCAC-AGA-CAAGCAATT-C-TCCTTGCAA----AATTTGTA---TAAGAATATAC-ATAGGGTG--GA--AAATTTAATAATTCTT--ATAA-TAATGCA----ATACATTTATACCAAT-CAATTTTCAA---GA--ATA---AGT--AC-ATTAAGTATA-GAAGCATCCCCCCAAAAA--AT-------TG-TCAT---CC-ACA-GAAT--CACAGT-T-GAGAAACTTT--T-GTTACT-GAAAA--ACTGCAGCT--ATAGGGAGTTT-G-A-------AAGATACTGGC--AAAGGATCTAT-GAT
gi|10 : ccaacttctatggatgacattattagagtcctagattacttggcaataatttcaggtctaaggataaatttttcaaagacaaaaatggtgtggataggtagtaaaacattttcaaaggaggttttccatcattcaaggtggaaatttgactggaacaatgaaacattggatttactagggataagattcaacagtaacttacaagaaatggttgaaatgaattataagactaaattaaaggaaattaaaaaggttatgatgcagtggaatagtagaaatcgtactcctttaggaaggctaacagtaataaagacaccaaaattgaatcactcatacttacaataggaaatcatttgtgcttttgaaagggatctttataactttctttagaataataaaactcatataaggttaagaaaaatatcatgatccaagaatggtggtataaaaaaggctgattataaggaatttatcactggtcttttaaagcatggatttgacgtattctacattcaaatgcaaaatggacaaaattattaggtgcagaattaattactggtatagataagctttggagatttggaatagattatattaataattcaagtgtaaaaaaaataccaacagcttttggaaagaagtgtttcagagctggtcaaagatgaattctgtaaatgctgaaaccaacccagatttcttttgtgatcatattttttataatccaaatattactgtcggtggaaaatcagtattttttgaaaacttttaagaattcaggcattgtatttatttctgaccttcttcatgaaaatggtaattggtacaagcttgataatatatacaaattgttttgaaagccaaaatgaattttatagaatatgcaggtttaaagcaagcaattcaacaaagacaagttcttttacaagacaaaataagggctttaaggccacatttgcctattattccatctGTAGTAAGTA-AATTT--GAGGCGTATTTAATTGAA-CATCTATTTGTT--GAAT-GTC-A----TTTAGTAAAAGAA-ATTTGG----AATGATATT-G-AAGAG---TGG-CTTT-TAA--ATAAATTTAGA-ATAT-CCGTATC--C-TTTAAT-AAAACAA-CAATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATGTTT-ATTAAGTA--CA--AAATCTATTGAC--TTTGATAA-TCAAGCAT-T-ATATTTTT---TCAAG-TAAATACAAA---GA--TCGACCAACCAAC-ACTAA--ATA-CAAGGGTTCT---AAaaaattgacca
gi|11 : acttgaattatttatttatttatacgtgcgctacagtgaaaatcccatctctacattacg-CTTTCCT-TTT-C-TCCCA-TTTACTTTACTCT-C---TCTA-CAATTTCCT-CTTATC-CCCCTGT--TCT-ATCT--GG--G--GTTT--CCC-CCCTTCTTTTTA------CTC----TCT--------CACTTTCTCTCTCT---CTTCTGTATT--AAAAAACAATC-------CATT--G----------TATG-----TG-TA----------------------TATA--TGTA-GGT---AT-----GCATTT-CCAAGT---AT-A-TGTG---GTATACAGTAAT-ACA--GTATA--TATG-ATG-T--AATT-TGA-CATGT--GA-T--T-TGT-T-ATGAAA-TGT--GAAGGTTGAAATAA----A-TATTGC-AAATAA-AAAAAAA
gi|13 : CTATATTTAAAAAAAAAAACTTATTTACATT-CA----------CAT------TG-TGATGGTGTATGATACAATTTGATTATAGGTGTAAGGT---AT-----GCATAT-CCAAGT---ATGA-TGTGCTTGTTT------AG-ACAGGGTATAT---TG-ATA-TTCAATT-TGA-TTTAT--TGTTGATATGT-TGATGAAA-TATTGAAAGGTGAAAATAGAAATA-TATTGC-AAATAA-AAAGAAAA
gi|14 : AAATCG-TACA-CATG--------A----T-----TTTC-----TT--TC-------------CCTTT--GTT-ACT-ACCT--CTAC--A-TTTGAC-ATG-TGC-CTCACCATATAT-ATCTGTGC-CTTTCCCATGT-C-T-CCA------TTTACT--------------ATTTCTTGCTT-TCACCTCTGTCATCT-ATCT--GGGAG--GTTT--GTT-TTCTACACTCT-------CTC----TCTCCTGACGACTCTTTCTCTCTCT---CT
gi|15 : AAATCG-TACA-CATG--------A----T-----TTTC-----TT--TC-------------CCTTT--GTT-ACT-ACCT--CTAC--A-TTTGAC-ATG-TGC-CTCACCATATAT-ATCTGTGC-CTTTCCCATGT-C-T-CCA------TTTACT--------------ATTTCTTGCTT-TCACCTCTGTCATCT-ATCT--GGGAG--GTTT--GTT-TTCTACACTCT-------CTC----TCTCCTGACGACTCTTTCTCTCTCT---CT
gi|16 : T-AAAAC--AATGCAAAT--ATACAGAATTT-GAA-------AAAAAAATGGCAG--AAAATTTGT-GATGTGTTGTG-TT-CAGAT-G-TACA-T-TG-------TA----TAACTGTTTCTGAGATT--TCAAAAAGAAATTTAT-TTTTGCTT-ACT-ACC-TCCTAC--A-T--GACCATG-TGC-CCC----
gi|17 : tttgc------TA-TA----------------------TAT---AGTA-AGC---A--------ATAT-CCAAGT---AT-A-TGTG---GTAT------A--ACA--GTATAT--ATG-ATA-T--AATT-TGAATATGTT-GATT--T-GTT-T-GAGAAA-TGT--GAAGGTTGAAATAA----A--ATAGC-AATTAA-AAAAAAATAA
gi|18 : acaacatcacaatgtatgtatatatatataTCT---CTTCCATAT----AAAAATTA---------CATT-CAATTATTGCATCAT------TA-TG----------------------T-T---TGTA-TAT---ATATGTAGCATAT-ACAAGT---AT-A-TGT-----TGT------AC-ACC--GTATATACATGCATG-A--AATC-CAA-CAAGTTGGATT--T-TAT-G-GCAAAA-T-T--GTAAGCTG
gi|19 : tttttat-CAAAT-G-TACA-C-TG--------A----T-----TTTT-----TT--CCC------------T-TTT--CTT-ACT-ACCT-CCTAC--A-T--GACCATG-TGC-CCC----TATAT-ATCTGTCC-CTTTCCT-TTT-C-TCCCA------TTTACT--------------ATTTCTT-CTTATC-CCTCTGT--TCT-ATCT--GG--G--
gi|20 : AAAT-G-TACA-C-TG--------A----T-----TTTT-----TTC-CC-------------T-TTT--CTT-ACT-ACC-TCCTAG--AGT--GACCATG-TG--CCC----TATAT-ATCTG-TC-GCTTCCT-TTT-C-TCCCA------TTTACT--------------ATTTCTT-CTTAT--CCTCTGT--TCT-ATCT--GG--G--TTTT--ggttt
gi|21 : -CAAAT-G-TACA-C-TG--------A----T-----TTTT-----TTC-CC-------------T-TTT--CTT-ACT-ACCT--CTAG--AGT--GACTATG-TG--CCC----TATAT-ATCTGT---CCTTCCT-TTT-C-TCCCA-TT------------------TA-CATATTCTT-CTTAT--CCTCTGT--TCT-ATCT--GG--G--GTTT--
gi|24 : CTCT---CTTCTGTATT--AAAAAACAA---------CATT-TA----------------------------------------------------TGTA-GGT---AT-----TCATTT-CCAAGT---AT-A-TGTG---GTGT------AT-TCA--GTTTA--TATG-ATG-T--AATT-TGA-CATGT--GATT--T-
gi|25 : A----------TAT------TA-TA----------------------TAT------A-TGT---AA-----GCATAT-CCAAGT---AT-A-TGTG---GTAT-------T-ACA--GTATAT--ATG-ATA-T--AATT-TGA-TATGT--GTAT--T-TGT-T-Agt
gi|26 : ctcacaatgtatgatatat-A-TGTG---GT--------AT-ACA--GTATAT--ATG-ATA-T--AATT-TCA-TATGT--GATT--T--GT-A-ATGAAA-TGT--GAAGGTTGAAATAA----A-TATT
gi|27 : CCT-CTTATC-CCTCTGT--TCT-ATCT--GG--GGGTTTT--CCC-CCCTTCTTTTTA------CTC----Tatata
gi|27 : CCT-CTTATC-CCTCTGT--TCT-ATCTGGGG--G--TTTT--CCC-CCCTTCTTTTTA------CTCTTTTTCT--------CTCTTTCTCTCTCT---CTttttctctctttctctctctctctc
gi|28 : TAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T--GT-T-ATGAAA-TGT--GAAGGTTGAAATAA----A-TATTGC-AAATAA-AAAAAAActc
gi|29 : AACTTTCAAA-----GAATAGA---AAATCACC--A---------CTTCTGCAGTAA-TG-AAATT--GA-----ATC-AATTGA
gi|3 : AAAAAACAA---------CCAA------AAAACAGGACATTTT----TCAGAGTTCGA-----ATGGAAAAA-AATATTTTT----GAA-CTTGTTTTC-AAAACAACACAGGAATCTAAA-
gi|30 : ttttcctacttccatcgatgacattacatgtattaaaatcatacattactttgcaatgatttcaggtctaaggttaaaattcagtgatttcaggtctaatgatggatttttcaaagacaaaaattttcaaaggttttccatcatacaaggtggtttgactggaacaataaaacctttgatttgctaggtataagattcagcatttatttacaagaaatggtgggtatgaaatataagactaaatgcagggaaatctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggttatgatgtagtggataagtctttctcctctaggtagaccaacaataataaagaaaccattgattccaaaattgaatcatttataatacttacaattccaaactctaaagagaaaactaactgtttttaaaagggatctctataacgttctttcgaataataaaactcgtaaagaaaaatatcataatccaattagaatatgctaattatggtataaaaattactgtaaggaatttctggcaacatggattcaactattctacatccaaatacaaaatggacaaaattaccaggtgtagaattaattactggtgtagataaactgtggagaagtggaatagattttattcatgatttgattttaaaaatatcaacagcttttagatagaagtatttcagaactggtcaaagataaattctgtaaaagctggaaacaaccgagatttttcttttgtgcatatctttcatcattcaaatattactgtcggtggaaaatcagtatttcttaaaagcgttcagtatgattcaggcattgtattcatttatgaccttgatgaaaatggtaattggtacaagctcgattatatacaaaatgatttgaaatccaaaatgaattttaaaggcatatgaaggattaaagagagcaattcaaaaaagacaagttcttttacaagacaatgattataaggactgtaaagctacatttgcctaatccatctactatattcaatacatacatgtatttcaaaaacaaaaaagattgtaaattgataaaaattaaagtagccaaaattaaatccatatcaaaaatgga-TTT--CTT-ACT-A-CTTTCTAC--A-T--GACAATT-TGC-CCC----TATAA-ATCTGTTC-taatagtggatgcagtcacatactatttccatgtaattactatttacataaacttagaattgttgattccttcagtctgcacattttgtaagagaaacttggaaactattgatcaaatttttgtagaatgcccttgtgtgtggaaataaagaatgactttatgaaaaactggacaggcatatcgctttgataaacaaataa
gi|31 : TGAAA-TGT--GAAGGTTGAAATAA----A-TATTGC-AATTAA-AAAAAAA
gi|5 : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAA-GACATGTATA--CTATTCTTTATTAATAGAGAAAA----AAACAAA--GT--CTTCAAAATT--AAAATAGGATATCAT----TCA-ACCTCTATAAGAATGAACCAA-A---TTTTT----GAAACTTCCTTTT-AAAGTCACACAAGA-TCAAAA-CTTC-ACTG-GT-----CAATTTCAAATTTTACATAGAATAGTCTCCAACAAACTCCATATCTA--TTTAAA--CTT---AA-----GATTAAAAAACAATC--CCCAGCA-GTGAGCTTCTGCAGTAA-TG-AAATT--GA-----ATCCAATTGAAGCATCTATTTGTT--GAAT-GTC------TTTAGTAAA-GAA-ATTTGGG---AATGA-ATTTG-AAGAG----GG-CTTT-TAT--ATAAATTTAGA-ATAT-CC-TATC--C-TTTGAT-AGACAAA-CAATA-T-ATTTTGGGA----AGTTTACAA-ACAAGAATGTTT-ATAA-GTA--CA--AAATCTATTGACTTT--GATAA-TCA-GCATAT-ATTTATTT---TTCAG-TAAATACAAA---GA--CCA---ACCCAAC-ACTAA--ATAACAAGGGTTCT---AAAAACAAT-------TAATTGT---GG-A-AAGAATATCATGATTG-GAAAAAATTT--TTACTATT-AA--C--AATGTA--T--ATACAGAATTTTG-A-------AAA---CTGGCAGAAAA--TTTGT-GA-GTGTTGTGATT-CAAAT-G-TACA-C-TGA------TA----T-----TTTT-----TT--TT-------------TCTTT--CTT-ACTTAACTTCCTAC--A-T--GACCATGGTGC-CCC----TATAATATCTGTTC-CTTTCCC-TTTTC-TCCCA-TTTACTTTACTCTTC---TCTA-CAATTTTCT-CTTATC-CCCCTGT--TCTTATCT--GG--G--TTTTT-ACCGCCCTTCTTTTAA------CTC----TCT--------CTCTTTC-CTTTCCATCCTTCTGTATT-ATAAAAACA----------CATTTCA----------CAT------TG-TA----------------------TATA--TGTA-GGT---AT-----GCATTTTCCAAGTTATAT-AATGTG---GT-T------ATTACA--GTATAT-TATG-ATG-T--AATTATGA-CATGT--GATT--T--GT-T-ATGAAAATGT---AAGGTTGAAATAA----AATATTGC-AAATAA---AAAAA
gi|6 : ACTATGAGAAATTT-TTTAATATCAATACA-AA-GGGATGTAAAGACAT-TATA--CTATTCTT-ATTAATAGATAAAAGAAAAAACAAACAGTA-CTTCAATATTTTAAAAT-GGATATCAT----TTC-ACCTCTATAGA-ATGGAACAAGAAT-TTT------GAA--TTCCTTTTTAAAGTCACACAAGAATCAAAAACTTTCACTG-GT---TACAATTTTCAATATTACATAGAATAGT-TCCAACAAACTTCATATCTA--TTTA----CTT-AAAA-----GATTAAA---CAATC--C--AGCT-GT-AGCTTC-GCAGTAA-TGTAAATT--GA-----ATC--ATTGAA-CATCTATTTGT---GAAT-GTC-A----TTTAGTAAAAGAA-ATTTGG----AATGATATTGG-AAGAG---TGG-CTTT-TAT--ATAA-TTTAGA-ATAT-CCATATC--CCTTTGATTAGAACAA-CAATA-T-TATTTGGGA----AGTTTACAATACAAGAAT-TTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGA-AA-TCAAGCAT-T--TATATTT---TCAAG-TAAATACAAA---GA--CCA-----CCAAC-ACTAA--ATA-CAAGGGTTCT---AAAAACAAT-------TA-TTGT---GG-A-A-GAAT--CATGAT-G-GAAAAA-TTT--T-ACTATT-AAAAC--AATGTAAAT--ATACAGAATTT-G-A-------AAAAAACTGGCAGAAA---TTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-ACT-AACTTTCTAC--A-T--GACCATG-TGC-CCC----TATAA-ATCTGTTC-CTTTCC--TTT-C-TCCCA-TT-ACTTTACTCT-C---TCTA-CAATTTTCT-CTTATC-CCCCT-T--TCT-ATCT--GG--G--TTTT--ACC-CCCTTCTTTTAA------CTC-----CT--------CTCTTTCTCTCTCT---CTTCTGTATTTAAAAAAACAA---------CATT-CA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCATTT-CCAAGT---AT-A-TGTG---GTGT------AT-ACA--GTATAT-TATG--TGTT--AATT-TGA--AT-T--GATT--T-TGT-T-ATGAAA-TGT--GGAAGGTGAAATAA----A-TATTGCAAAATAATAAAAAAAAAA
gi|7 : ACTATGAGAA-TTT-TT-A-TATCA-TACA--A-GGGATGTAAAGACATGTATA--CTATTCTT-ATTAATAGA----AGAAAAA-CAA---GTA--TTCAATATT--AAAAT-GGA-ATCAT----TCA---CTCTATA-TGATGGAACAA-AAT-TTTTT----GAA-CTTCCTTTT-AA-GTCACACAAGAATCAAAA-CTTCAACTG-AT---TACAAT--CAA---TTACATAGA-TAGT-TCCAACAA--CTCATATCTA-ATTTAAA--CTT-TAA------GATTAAA---CAATC--CCCAGCATGT-AGCTTCTGCAGTAA-TG-AAATT--GA-----ATCAAATTGAA-CATCTATTTGTT--GAAT-GTC-A----TTTAGTAAAAGAA-ATTT-G----AATGATATTGA-AAGAG---TGG-CTTTATAT--ATAAATTTAGA-A-ATACCATATC--C-TTTGAT-AGAACAACCAATA-T-TA-TTGGGA----AGTTTACAA-ACAAGAATTGTT-AT-AAGTA--CA--AAATCTATTGAC--TTTGATAA-TCAAGCAT-T-AT-TATTT---TCAAG-TAAATACAAA---GA--CC----AACCAAC-ACTAA--ATA-CAAGGGTTCT---AAAAACAAT-------TA-TTGT---GG-A-A-AGAT--CATGAT-G-GAAAAAATTT--T-ACTATT-TAAA---AATGT-AAT--ATACAGAATTT-G-A-------AAAAAACTGGCAG-AAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC---------------TTT--CTT-ACT-A-CTT-CTAC--A-T--GACCAT--TGCGCCC----TA-AA-ATCTGTTC-CTTTCCT-TTT-CTTCCCATTT-ACTTTACTCTCC---TCTA-CAATTTTCT-CTTATC-CCCTT-T--TCT-ATCT--GG--GT-TTTT--ACC-CCCTTCTTTTAA------CTC----TCT--------CTCTT--TCTCTCT---CTTCTGTA-TTAAAAAAACAA---------CA-T-CA----------C-T------TACTT----------------------TAT---TATA-GTTACAAT-----TCGTTT--CAAGT---AT-A-TGTG---GTGT------AT-ACA--GTATAT-TATG-ATG-T--AATT-TGA-CATGT--GA-T--T-TGT-A-TTGAAA-TGT--G-AGGTTGAAATAA----A-TA-TGC-AAATAA-AAAAAAAAAttg
gi|8 : ttgcttatggacattatacccagtATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTT--GATAA-TCAAGTAT-T-ATATTTTT---TCAAG-TAAATACAAA---GA--CC----AACCAAC-ACTAA--ATA-CAAGGGTTCT---AAAAACAAT-------TA-TTGT---GGAA-A-GAAT--CATGAT-G-GAAAAATTTT--T-ACTATT-AAAAC--AATGTAAAT--ATACAGAATTT-G-A-------AAAAAACTGGCAG---AAATTTGT-GATGTCTTGTGATT-CAAAT-G-TACA-C-TG-------TATTTTT-----TTTT-----TT--TC-------------T-TTT--CTT-ACT-A-CTTTCTAC--A-T--GACCATG-TGC-CCC----TATAA-ATCTGTTCTCTTTCCT-TTT-C-TCCCATTT-ACTTTACTCT-C---TCTA-CAATTTCCT-CTTAT--CCCCTGA--TCT-ATCT--GG--G--TTTTTCTCC-CCCTTCTTTTTACTCTCTCTC----TCT--------CTCTTTCTCTCTCT---CTTCTGTA-TTAAAAAAACAA---------CATT-CA----------CATTGTATGTG-TA----------------------TAT---TGTA-GGT---AT-----GCATTT-CCAAGT---AT-A-TGTG---GTGT------AT-ACA--GTATA--TATG-ATG-T--AATT-TAA-CATGT--GA-T--T-TGTAT-ATGAAA-TGT--GAAGGTTGAAATAA----A-TATTGC-AAATAAGAAAAA
gi|9 : -CATCCATGTGTTTTGAGTAGTG-AAAACTTCACTGCAAGAA---TTGGTGCGAATGATATTTGCAAGAGAGATGGTCTTT-TAA--ATAAATTTAGATATAT-CCACATC--C-TTTGAT-AAAACAA-CAATAATATATTTGGTATAACAGTTTG-GA-ACAAGAATGTTTCATAAAGTAGCCAGAAAATG-ATTGACTTT--GATAAGTCA-GCAT-TTATATTTTT---TCAAGATAAATACAAAAGCGAACCCA---TACCAACCACTAA--AAA-CAAGGGTTCT---AAAA-TAATGCGCGAATA-CTATCTGGA-A-A-GAAT--TATGAT-GTGGAATGGTTTATT-ACTATTTAAAACTCGATGTGAACTCATACAGAATTG-G-AGAAAGGAAAAAAACTGGCAGAAAAAGTGTGTTGATGTGTTGTGATTGCAAAT-GATACAAC-TGCATAATATA----T-----TTTT-----TTCTTC-------------T-TTT--CTTTACT-ACTTTTCTACTTA-T--GACCACG-TGC-CCC----TATAA-ATCTGTTC-CTTTCCT-TTT-C-TCCCATTT-ACTTTACTCT-CTCGTCTACCAAATTCCT-CTTACC-CCTCTGT--TCT-ATCT--G
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CCTACTTCCATCGTAAAACATTACATGTATAAAAATCAACGATACTTTGCAATGATTTCAGGATATAAGGTTAAAATTCAGTGATTTCAGTCTTAGATGATGGATTTTCCAAAGACAAAAATTTGTCAAAGTTGTTCCATCTACAAAAGGTGTTGACTGGAACAATAAAAACCTTTGATTTTGCTAGGTATACGATTCCAGCATTGATTTACAAGGAAAGTGGTGATAAAGTATAAGATGAATGCAGGAAATCTAAAAAAAAAAAAAAAAAAAAAAAACAAAGAAGAAGAAAAAAAAAAAAGGTTATGATGTAGTGGATAAGTCTTTTCTCCTCTAGGTAGACCAACAATAATAAAGAAAACCATTGATTTCCAAATGAATCATTTTTAATTACTTACAATTCCAAACTCTAGAGAGAAAAAGCGTGAAACTGGTTTTTAACAAGGATTCTAGTAAAACTTCTTTCGAACTAAATAAAACTCGTAAAAGAAAAAATAGTCATAATCATTAGAATATGCAAATGGTATAAAAAATTACTGTAAGGAAATTTCTGGCACAGGGATCAGCTTATTCTACATCCAGAAATACAAAAATGGGACAAATACCAGGTGATAGAAATTAATACTGTGTAGATAAACTTGGAGAAGGGAAAGATTATTCATGATTGGAGGTGTTAAAATAATCCAACAGCTTTAGATGAAGTATTTCAGAAACTGGTCAAATAAATTCTGTAAAAGTGAAAATACAACCGAGATTTTCTTTGGATCTTCATCATTCAGAATATTACGTCGGTGGAAAATCAGTATTCTTAAAAAGCGTCAGGTATGATTCAGGCAGTGTAAGTTCATTTATACCTTGAAAAATGGTTTGGTACAAGCTCATTATATACAAAGATGATTTGAAATCCAAAATATTTAAAAAGGCATCTGAGATAAAGAGAGGCAATTTCAAAAAAGACAAATCCTTAACAAGACAATGATTAGAAGACTGGTAATGCTACATTGCCATCACTGCTATCAATCATAACATACAGGTATTTCAAAAACAAAAAGATGTAAAATTCATAAAAATTAAATAGCCAAAAATTACATCCATATCAAAATGGAAAAAAAACAACCAGAAACAGGACATTTTCATGAGTTCGAATGGAAAAAACAAAAATATTCTTGAACCTTGTTTTCAAAGACACACGGAACTAAATAGATAGTGGATGCTACGTCACATGTACTATTCCATGTAATTACTATCTTACAATAAACTAGAATCTGTGATCCTTCAGTCTGCGACATGTTGTAAGAGAACTTGGAGAACTTTGATCAAATTTTTGTAGAATGCCCTTGTTGTTGAAATAAAGAATGACTTTATGAAAAAGACTGGATCAGGCAATATCGCGTTTGAAACAAACTAAT
Unaligned ( gi|4 ): TTCGAACTCATCTCTGGGATTTTTATATATTAAACGACTTGACTTTCAACTTCGGAACATCATAAACAACTGGATAAAAACTTTTTAATATGAATATAATATTGTGTCATTACAAATTGGATAAACTGCAGAAATATTTTCAACCCACAAAGAGGCCTGTAGCAAGGCGAATCCATAATCACCTCTCTTTTTTGCTCTGTGCAGAAGTCTCGGAATAATATAAAAATAATAAAGATAAAAAAGGAATAACAATTGAGGGGAGGAATATAAATTATGCCAGTATGGCGATGATAACTTCATTATTCTCAGATGGATGCACGCCGAATCCATGGTTGTTCATCCTTAGAGAGAGATTATTTGGCTATATGTTTCCGGTCTGTAGATAAAATTTCTCCAAAACTAAAATGGTATGGATTGGCAGTAAATAAAATTTCAAATGAAGGTTTCTATCTATTCCAGATGGAAACTTTGATGCGAAAAATCCAACATTATGATCTTTGGGGATTAAAATTCTCTGTAGACTTAATAGGAATGAATTGAATTGAACTCATAACTCCAAGACTACTTGAAGGTTAAGAACCTCAAAATCGATTGGAAATGTAAGAAAAGTGACCTCTATCGGAAGACTAGTTGTAAATAAAAACTTTAAATTAAATACCAAAGATGAACCATTTGATACTTTGCTGATATACAAATCCTGACCGCAGAATATATAATAATATTTGAAAGACAAGAAAAATTTTTAAGCTATTGATGGGGAAGTCAAATTCATAAAACTCAAAAGAATATACATATCATTCATGAATTAAATGGAGGATTAAAATTGAACAGACTTCCAGAATTTATTACAGCTTTAAAAATCAAGTGGTATAAGAATTCTTCAATCAATTCAATAATGATTACATTTAACTGAGGGCAGAGTTGACAACAAATTCAATAATTTATGGTTGGAGGGACTGACTACAATCCTTACATAGTAAAACAACCAATAAAAATTTTTGGAAAGAGGCTCGTTTTTCCAGCTGGATTCAA
Unaligned ( gi|12 ): CTCAATGGTGATGAATTGAGTTGACAAGTTGTTAATGACCTCAATTAAACCTCAAAAGTAAAACTACCGTATTGAGAAAGATTTATAACACTCATTATATCGATGGAAATTAAGAAAGCTGACCCTATCGGAAGGACTGAGTTGTAATGTAAACTACTTTGATTATACCAAGATGAACCCCATTATAGATTACTATTACCAATCTGACCCATGAACTTAGTGTATATTTACAAAAAAGAT
Unaligned ( gi|22 ): AAAGGAAGTGTTCTATCATACAAGGTGGAAATTTGAATGAAATAAAACCTTTGAATTACTCGGGATAAGATTCAACATTAATTTACAAGAAATGGTTGAAAT
Unaligned ( gi|23 ): ATTTCAAATGAAGTATTTCATCATTCCAGATGGAAACTTGACTGGAAAAATACAACATTTGATCTCTTGGGGATAAAATTCTCTGTAGACCTTAATGGAAT
Alignments
lowQualScore : 1 1 1 1 1 11 1 333333 11 333333333 111111 1 1111 111 11 111111 11111 11111 11111 2222 1111111111 3333333333 11111 333333333333 111111 11 22222222 111 11111 1111 1 111 1 11 1111 22 111 111111 111 2222222 111111 11111 222222222 22 22222222 11 333333333333333 111 1111 222222 3333333333333 3333333 111111111 222222 111 222222222 5555555555555555555555555555555555555555555555555555 11111 111 111111 111
lowQualScore : 0 0 3 0 3 66 5 0 3 2 33 2 0 8 333333 11 666666666 222222 5 3 7777 222 11 77 8 8 888888 0 0 1 11111 8 8 66666 66 0 88888 11 4444 1 77 4 0 0 0000000000 6 0000000000 66666 111111111111 666666 999 5 55 00000000 5 5 333 5 5 33333 0 7 5 0 5 2222 5 1 5 000 5 1 888 1 5 5 5 22 6 33 5 5 1 5 6 5 5 1 2222 0 5 3 5 1 0 77 77 5 00 5 1 5 5 1 1 5 5 000 77 888888 5 77 5 000 7 1111111 6 666666 6 99 22222 7 6 99 888 7 77 5 222222222 00 0 5 5 7 3 3 7 88888888 7777 99999 99999 22 111111111111111 44 3 3 000 44 6 99 1 3 3 4444 3 1 1 3 3 7 3 777777 3333333333333 6 6 2 88 3 44 0000000 666 4 666666666 9999 888888 777 222 0 666666666 5 1111111111111111111111111111111111111111111111111111 4 777 00000 4 1 4 000 666 5 000000 3 55 111 3 3 44 3 3 77 9 44 55 555 3 55 4 8888 4 4
lowQualScore : . . . . . .. . . . . .. . . . ...... .. ......... ...... . . .... ... .. .. . . ...... . . . ..... . . ..... .. . ..... .. .... . .. . . . .......... . .......... ..... ............ ...... ... . .. ........ . . ... . . ..... . . . . . .... . . . ... . . ... . . . . .. . .. . . . . . . . . .... . . . . . . .. .. . .. . . . . . . . . ... .. ...... . .. . ... . ....... . ...... . .. ..... . . .. ... . .. . ......... .. . . . . . . . ........ .... ..... ..... .. ............... .. . . ... .. . .. . . . .... . . . . . . . ...... ............. . . . .. . .. ....... ... . ......... .... ...... ... ... . ......... . .................................................... . ... ..... . . . ... ... . ...... . .. ... . . .. . . .. . .. .. ... . .. . .... . .
lowQualScore : 0 0 2 0 2 55 5 0 2 5 88 5 0 0 666666 00 666666666 000000 4 8 0000 666 88 00 0 0 444444 8 8 4 22222 0 0 66666 44 8 00000 66 8888 4 44 0 8 8 3333333333 7 7777777777 33333 333333333333 444444 333 7 77 66666666 7 7 333 7 7 66666 1 1 7 1 7 1111 7 4 7 000 7 4 999 7 0 7 7 11 3 66 7 7 7 7 7 7 7 0 1111 1 7 0 7 7 1 99 99 0 33 7 7 7 7 7 0 7 7 000 99 999999 7 99 7 000 3 7777777 7 000000 7 22 55555 5 7 66 666 1 99 7 333333333 33 1 7 0 3 6 6 3 77777777 7777 11111 11111 33 888888888888888 66 3 3 111 66 7 22 8 3 3 2222 6 0 2 3 6 3 6 999999 7777777777777 2 2 0 55 1 22 6666666 000 4 000000000 4444 888888 000 888 4 999999999 0 1111111111111111111111111111111111111111111111111111 0 000 00000 0 4 0 000 444 7 555555 6 00 111 3 3 66 3 3 99 5 66 44 222 6 00 0 5555 4 4
consensus : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAAAGACATGTATA--CTATTCTT-ATTAATAGA-AAAA---GAAAAA--ACAAA--GTA-CTTCAANATT--AAAATAGGATATCAT----TCA-ANCTCTATAGAGATGGAACGA-AAT-TTTTT----GAACTTCCTTTTAAAGTCACACAAGAATCAAAA--TTTCA-CTG-GT---TGCAATTTCAAAT----TTTACATAGAATAGT-TCCAACAAACTNCATATCTA-ATTTAAAACT-TT-AAA-----GATT---AAACAATCCCCAGCA-GT-AGCTTCTGCA------GTAA-T-G-AAATT--GAA------T-CAA-TTGAA-CATCTATTTGTT--GAAT-GT-CA----TTTAGTAAA-AGAAATTT-GG----AATGATATT-G-AA-GAG---TGG-CTTT-TA--NATAAATTTAGA-A-TATCCGTATC--C-TTTGAT-AGAACAA-C-AATA-T-TATTTGGNA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGATAA-TCAAGCAT-T-ATATNT-TTTCAAG-TAAATACAAA---GA--CCA---AACCAAC-ACTAA--AT-ACAAGGGT---TCTAAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAATTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TACCTTCCTAC--A-T--GACCAT-GTGC-CCC----TAT-ANATCTGTTC-CTTT-CCT-TTTC-TCCCA-TT-ACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CCTCTGT--TC-TATCT--GGG-----T-TTT--NCC-CCCTTCTTTTNA------CTC----TCT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAAAAA
Reference ( family-2753 ) : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAAAGACATGTATA--CTATTCTT-ATTAATAGA-AAAA---GAAAAA--ACAAA--GTA-CTTCAANATT--AAAATAGGATATCAT----TCA-ANCTCTATAGAGATGGAACAA-AAT-TTTTT----GAACTTCCTTTTAAAGTCACACAAGAATCAAAA--CTTCA-CTG-GT---TACAATTTCAAAT----TTTACATAGAATAGTCTCCAACAAACTTCATATCTA-ATTTAAAACT-TT-AAA-----GATT---AAACAATCCCCAGCA-GT-AGCTTCTGCA------GTAA-T-G-AAATT--GAA------T-CAA-TTGAA-CATCTATTTGTT--GAAT-GT-CA----TTTAGTAAA-AGAAATTT-GG----AATGATATT-G-AA-GAG---TGG-CTTT-TA--NATAAATTTAGA-A-TATCCGTATC--C-TTTGAT-AGAACAA-C-AATA-T-TATTTGGNA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGATAA-TCAAGCAT-T-ATATNT-TTTCAAG-TAAATACAAA---GA--CCA---AACCAAC-ACTAA--AT-ACAAGGGT---TCTAAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAANTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TACCTTCCTAC--A-T--GACCAT-GTGC-CCC----TAT-ANATCTGTTC-CTTT-CCT-TTTC-TCCCA-TT-ACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CCTCTGT--TC-TATCT--GGG-----T-TTT--NCC-CCCTTCTTTTTA------CTC----TCT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAAAAA
gi|1 : ACTATGTCAA-TATATTTA-AA--AA-ACATAATAGGTTGTGAAGATATGTATAAGCTATT---------------------GATAAACCATAAA--GTAGC--CAAACTT--AAATCC--ATATCATAATGTGA-AGATTTTCAGAGTTAGAATGG-AAT-TTTTTTTTAGAACTTCCTTTTAAAACAACCCAGGAATCTAAA--TCACA-CTGAGTGGATGCAGTTTCAAAT----TTTACTCAG-ATA--TTCCATGTAATTGC-TATCTACAT---AAGCT-TT-GAATTGTTGATT---CCCCAATCT---GCA-CT----TTTTGTA------AGA----G-AGACTTGGAA------A-CTA-TTGAT-CACGTTTTTGTA--GAAT-GTCCA----TGTGTTAAAGGGAGATCT-GG----TGTGGAATT-G-AA-GAA---TGG---TT-TAATGAAAAACT--GG-A-CAT--GCATTAGC-TTTCAC-AG-ACAAGC-AATT-C-TCCTTGCAA----AATTTGT---ATAAGAATATAC-ATAGGGTG--GA--AAATTTAATAATTCTT--ATAA-TAATGCAA-T-ACATTTATACCAAT-CAATTTTCAA---GA--ATA---AGT--AC-ATTAAGTAT-AGAAGCATCCCCCCAAAA--AAT-------T-GTCAT---CC-ACAGA--ATCACAGT--T--GAGAAACTT-TTGTTACT-GAAAA--ACTGCAGCT--ATAGGGAG-TTTG-A-------AAGATACTGGC--AAAGGATCTAT-GAT
gi|10 : ccaacttctatggatgacattattagagtcctagattacttggcaataatttcaggtctaaggataaatttttcaaagacaaaaatggtgtggataggtagtaaaacattttcaaaggaggttttccatcattcaaggtggaaatttgactggaacaatgaaacattggatttactagggataagattcaacagtaacttacaagaaatggttgaaatgaattataagactaaattaaaggaaattaaaaaggttatgatgcagtggaatagtagaaatcgtactcctttaggaaggctaacagtaataaagacaccaaaattgaatcactcatacttacaataggaaatcatttgtgcttttgaaagggatctttataactttctttagaataataaaactcatataaggttaagaaaaatatcatgatccaagaatggtggtataaaaaaggctgattataaggaatttatcactggtcttttaaagcatggatttgacgtattctacattcaaatgcaaaatggacaaaattattaggtgcagaattaattactggtatagataagctttggagatttggaatagattatattaataattcaagtgtaaaaaaaataccaacagcttttggaaagaagtgtttcagagctggtcaaagatgaattctgtaaatgctgaaaccaacccagatttcttttgtgatcatattttttataatccaaatattactgtcggtggaaaatcagtattttttgaaaacttttaagaattcaggcattgtatttatttctgaccttcttcatgaaaatggtaattggtacaagcttgataatatatacaaattgttttgaaagccaaaatgaattttatagaatatgcaggtttaaagcaagcaattcaacaaagacaagttcttttacaagacaaaataagggctttaaggccacatttgcctattattccatctGTA------GTAAGT-A-AATTT--GAGGCGTATT-TAA-TTGAA-CATCTATTTGTT--GAAT-GT-CA----TTTAGTAAA-AGAAATTT-GG----AATGATATT-G-AA-GAG---TGG-CTTT-TA--AATAAATTTAGA-A-TATCCGTATC--C-TTTAAT-AAAACAA-C-AATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATGTTT-ATTAAGTA--CA--AAATCTATTGAC--TTTGATAA-TCAAGCAT-T-ATATTT-TTTCAAG-TAAATACAAA---GA--TCGACCAACCAAC-ACTAA--AT-ACAAGGGT---TCTAAaaaattgacca
gi|11 : acttgaattatttatttatttatacgtgcgctacagtgaaaatcccatctctacattacg-CTTT-CCT-TTTC-TCCCA-TTTACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CCCCTGT--TC-TATCT--GGG-----G-TTT--CCC-CCCTTCTTTTTA------CTC----TCT------CACTTTCTCTCTC---TCTTCTGTATT--AAAAAACAATC-------CA-TT-G----------TATG-----TG-TA----------------------TATA--TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTATACAGTAA-TACAG--TATA--TATG-ATG-T--AATT-TGA-CATGT--GA-T--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAA
gi|13 : CTATATTTAAAAAAAAAAACTTATTTACA-TTCA----------CAT------TG-TGATGGTGTATGATACAATTTGATTATAGGTGTAAGGT---AT-----GCA-TATCCAAG-TATG--ATGTGCTTGTTT------A-GACAGGGTATAT-T--G-ATA-TTCAATT-TGA-TTTAT--TGTTGATATGT-TGATG-AAATATTGAAAGGTGAAAAT-AGAAATATATTGC-AAATAA-AAAGAAAA
gi|14 : AAATCG-TACA-CATG--------A----T-----TTTC-----TT--TC-------------CCTTT--GTT-AC-TACCT--CTAC--A-TTTGAC-AT-GTGC-CTCACCATAT-ATATCTGTGC-CTTT-CCCATGTC-TCC------A-TTTACT---------------ATTTCTTGCTT-TCACCTCTGTCATC-TATCT--GGGAGGTTTGTTT--TCT-ACACTCTCT---------CTC----TCCTGACGACTCTTTCTCTCTC---TCT
gi|15 : AAATCG-TACA-CATG--------A----T-----TTTC-----TT--TC-------------CCTTT--GTT-AC-TACCT--CTAC--A-TTTGAC-AT-GTGC-CTCACCATAT-ATATCTGTGC-CTTT-CCCATGTC-TCC------A-TTTACT---------------ATTTCTTGCTT-TCACCTCTGTCATC-TATCT--GGGAGGTTTGTTT--TCT-ACACTCTCT---------CTC----TCCTGACGACTCTTTCTCTCTC---TCT
gi|16 : T-AAAAC--AATGCAAAT--ATACAGAA-TTTGAA-------AAAAAAATGGCAG--AAAATTTGT-GATGTGTTGTG-TT-CAGAT-G-TACA-T-TG-------TA----TAACTGTTTCTGAGATT--TCAAAAAGAAATTTAT-TTTTGCTT-AC-TACC-TCCTAC--A-T--GACCAT-GTGC-CCC----
gi|17 : tttgc------TA-TA----------------------TAT---AGTA-AGC---A--------A-TATCCAAG-TAT---ATGTG---GTAT------A--ACAG--TATAT--ATG-ATA-T--AATT-TGAATATGTT-GATT--T-GTT-T-GAG-AAATGT--GAAGGTTGAAAT-AAA-----ATAGC-AATTAA-AAAAAAATAA
gi|18 : acaacatcacaatgtatgtatatatatataTC---TCTTCCATAT----AAAAATTA---------CA-TTCAATTATTGCATCAT------TA-TG----------------------T-T---TGTA-TAT---ATATGTAGCA-TATACAAG-TAT---ATGT-----TGT------A-CACCG--TATATACATGCATG-A--AATC-CAA-CAAGTTGGATT--T-TAT-G-GCA-AAAT-T--GTAAGCTG
gi|19 : tttttat-CAAAT-G-TACA-C-TG--------A----T-----TTTT-----TT--CCC------------T-TTT--CTT-AC-TACCT-CCTAC--A-T--GACCAT-GTGC-CCC----TAT-ATATCTGTCC-CTTT-CCT-TTTC-TCCCA------TTTACT---------------ATTTCTT-CTTATC-CCTCTGT--TC-TATCT--GGG-----
gi|20 : AAAT-G-TACA-C-TG--------A----T-----TTTT-----TTC-CC-------------T-TTT--CTT-AC-TACC-TCCTAG--AGT--GACCAT-GTG--CCC----TAT-ATATCTG-TC-GCTT-CCT-TTTC-TCCCA------TTTACT---------------ATTTCTT-CTTAT--CCTCTGT--TC-TATCT--GGG-----T-TTT--ggttt
gi|21 : -CAAAT-G-TACA-C-TG--------A----T-----TTTT-----TTC-CC-------------T-TTT--CTT-AC-TACCT--CTAG--AGT--GACTAT-GTG--CCC----TAT-ATATCTGT---CCTT-CCT-TTTC-TCCCA-TT-------------------TA-CATATTCTT-CTTAT--CCTCTGT--TC-TATCT--GGG-----G-TTT--
gi|24 : CTC---TCTTCTGTATT--AAAAAACAA---------CA-TTTA----------------------------------------------------TGTA-GGT---AT-----TCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TTCAG--TTTA--TATG-ATG-T--AATT-TGA-CATGT--GATT--T-
gi|25 : A----------TAT------TA-TA----------------------TAT------A-TGT---AA-----GCA-TATCCAAG-TAT---ATGTG---GTAT--------TACAG--TATAT--ATG-ATA-T--AATT-TGA-TATGT--GTAT--T-TGT-T-Agt
gi|26 : ctcacaatgtatgatatat---ATGTG---GT--------A-TACAG--TATAT--ATG-ATA-T--AATT-TCA-TATGT--GATT--T--GT-A-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATT
gi|27 : CCT-CTTATC-CCTCTGT--TC-TATCT--GGGGG---T-TTT--CCC-CCCTTCTTTTTA------CTC----Tatata
gi|27 : CCT-CTTATC-CCTCTGT--TC-TATCTGGGGG-----T-TTT--CCC-CCCTTCTTTTTA------CTCTTTTTCT------CTCTTTCTCTCTC---TCTttttctctctttctctctctctctc
gi|28 : TAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T--GT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAActc
gi|29 : AACT-TTCAAA-----GAAT---AGAAAATCACCA---------CTTCTGCA------GTAA-T-G-AAATT--GAA------T-CAA-TTGA
gi|3 : A-AAAATGGAAAAAA--ACAA---------CCAA------AAAACAGGACATTTT----TCAGAGTTC----GA-ATGGAAAAA-AATATTTTT----GAACTTGTTTTCAAAACAACACAGGAATCTAAA--TAATA-GTG-GA---TGCAG--TCACATACTATTTCCATGTAAT--T-----ACTATTTACATA---A-ACTTAGAATTGTT---------GATT---------CCTTCAG----------TCTGCACATTTTGTAA-GAG-AAACTTGGAA------A-CTA-TTGAT-CAAATTTTTGTA--GAAT-GC-CC----TT--GT--------GTGT-GG----AA--ATA-----AA-GAA---TGA-CTTTATG--AA-AAACT--GG-A-CAGGCATATCG-C-TTTGAT-A-AACAA-
gi|30 : ttttcctacttccatcgatgacattacatgtattaaaatcatacattactttgcaatgatttcaggtctaaggttaaaattcagtgatttcaggtctaatgatggatttttcaaagacaaaaattttcaaaggttttccatcatacaaggtggtttgactggaacaataaaacctttgatttgctaggtataagattcagcatttatttacaagaaatggtgggtatgaaatataagactaaatgcagggaaatctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggttatgatgtagtggataagtctttctcctctaggtagaccaacaataataaagaaaccattgattccaaaattgaatcatttataatacttacaattccaaactctaaagagaaaactaactgtttttaaaagggatctctataacgttctttcgaataataaaactcgtaaagaaaaatatcataatccaattagaatatgctaattatggtataaaaattactgtaaggaatttctggcaacatggattcaactattctacatccaaatacaaaatggacaaaattaccaggtgtagaattaattactggtgtagataaactgtggagaagtggaatagattttattcatgatttgattttaaaaatatcaacagcttttagatagaagtatttcagaactggtcaaagataaattctgtaaaagctggaaacaaccgagatttttcttttgtgcatatctttcatcattcaaatattactgtcggtggaaaatcagtatttcttaaaagcgttcagtatgattcaggcattgtattcatttatgaccttgatgaaaatggtaattggtacaagctcgattatatacaaaatgatttgaaatccaaaatgaattttaaaggcatatgaaggattaaagagagcaattcaaaaaagacaagttcttttacaagacaatgattataaggactgtaaagctacatttgcctaatccatctactatattcaatacatacatgtatttcaaaaacaaaaaagattgtaaattgataaaaattaaagtagccaaaattaaatccatatc-TTT--CTT-AC-TACTTTC-TAC--A-T--GACAAT-TTGC-CCC----TAT-AAATCTGTTC-ataa
gi|31 : TG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AATTAA-AAAAAAA
gi|5 : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAA-GACATGTATA--CTATTCTTTATTAATAGA-GAAA------AAA--ACAAA--GT--CTTCAAAATT--AAAATAGGATATCAT----TCA-ACCTCTATAAGAATG-AACCA-AAT-TTTTG----AAACTTCCTTTTAAAGTCACACAAGA-TCAAAA--CTTCA-CTG-GT-----CAATTTCAAAT----TTTACATAGAATAGTCTCCAACAAACTCCATATCT--ATTT-AAACT-T---AA-----GATTAAAAAACAATCCCCAGCA-GTGAGCTTCTGCA------GTAA-T-G-AAATT--GAA------TCCAA-TTGAAGCATCTATTTGTT--GAAT-GT-C-----TTTAGT-AA-AGAAATTTGGG----AATGAATTT-G-AA-GAG----GG-CTTT-TA--TATAAATTTAGA-A-TATCC-TATC--C-TTTGAT-AGACAAA-C-AATA-T-ATTTTGGGA----AGTTTACAA-ACAAGAATGTTT-AT-AAGTA--CA--AAATCTATTGAC--TTTGATAA-TC-AGCATAT-ATTTAT-TTTTCAG-TAAATACAAA---GA--CCA---ACCCAAC-ACTAA--ATAACAAGGGT---TCTAAAAACAAT-------TAATTGT---GGAA-AGAATATCATGATTGG--AAAAAATTT-TTACTATT---AAC--AATGT--AT--ATACAGAATTTTG-----------AAAACTGGCAG--AAAATTTGT-GA-GTGTTGTGATT-CAAAT-G-TACA-C-TGA------TA----T-----TTTT-----TT--TT-------------TCTTT--CTT-ACTTAACTTCCTAC--A-T--GACCATGGTGC-CCC----TATAATATCTGTTC-CTTTCCCT-TTTC-TCCCATTT-ACTTTACTCTT-C---TCTA-CAATTTTCT-CTTATC-CCCCTGT--TCTTATCT--GGGT----T-TTT--ACCGCCCTTCTTTTAA------CTC----TCT------CTCTTTC-CTTTCCATCCTTCTGTA-TTATAAAAAC-A---------CATTTCA----------CAT------TG-TA----------------------TATA--TGTA-GGT---AT-----GCATTTTCCAAGTTATATAATGTG---GT-T------ATTACAG--TATAT-TATG-ATG-T--AATTATGA-CATGT--GA-T--T-TGT-T-ATGAAAATGT---AAGGTTGAAATAAAA----TATTGC-AAATAA-AAAAA
gi|6 : ACTATGAGAAATTT-TTTAATATCAATACA-AA-GGGATGTAAAGACAT-TATA--CTATTCTT-ATTAATAGATAAAA---GAAAAA--ACAAACAGTA-CTTCAATATTTTAAAAT-GGATATCAT----TTC-ACCTCTATAGA-ATGGAACAAGAAT-TTT------GAATTCCTTTTTAAAGTCACACAAGAATCAAAAACTTTCA-CTG-GT---TACAATTTTCAAT----ATTACATAGAATAGT-TCCAACAAACTTCATATCTA--TTTA---CT-TA-AAA-----GATT---AAACAATCC--AGCT-GT-AGCTTC-GCA------GTAA-T-GTAAATT--GAA------T-CA--TTGAA-CATCTATTTGT---GAAT-GT-CA----TTTAGTAAA-AGAAATTT-GG----AATGATATT-GGAA-GAG---TGG-CTTT-TA--TATAA-TTTAGA-A-TATCCATATC--CCTTTGATTAGAACAA-C-AATA-T-TATTTGGGA----AGTTTACAATACAAGAAT-TTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGA-AA-TCAAGCAT-T--TATAT-TTTCAAG-TAAATACAAA---GA--CCA-----CCAAC-ACTAA--AT-ACAAGGGT---TCTAAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAA-TT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAA---TTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TAACTTTCTAC--A-T--GACCAT-GTGC-CCC----TAT-AAATCTGTTC-CTTT-CCT-TT-C-TCCCA-TT-ACTTTACTC-T-C---TCTA-CAATTTTCT-CTTATC-CCCCT-T--TC-TATCT--GGG-----T-TTT--ACC-CCCTTCTTTTAA------CTC-----CT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG--TGTT--AATT-TGA--AT-T--GATT--T-TGT-T-ATG-AAATGT--GGAAGGTGAAAT-AAA----TATTGCAAAATAATAAAAAAAAAA
gi|7 : ACTATGAGAA-TTT-TT-A-TATCA-TACA--A-GGGATGTAAAGACATGTATA--CTATTCTT-ATTAATAGA-AGAA-------AA--ACAA---GTA--TTCAATATT--AAAAT-GGA-ATCAT----TCA---CTCTATAT-GATGGAACAA-AAT-TTTTT----GAACTTCCTTTTAA-GTCACACAAGAATCAAAA--CTTCAACTG-AT---TACAAT--CAA-------TTACATAGA-TAGT-TCCAACAA--CTCATATCTA-ATTTAAA-CT-TT-AA------GATT---AAACAATCCCCAGCATGT-AGCTTCTGCA------GTAA-T-G-AAATT--GAA------T-CAAATTGAA-CATCTATTTGTT--GAAT-GT-CA----TTTAGTAAA-AGAAATTT-G-----AATGATATT-G-AAAGAG---TGG-CTTTATA--TATAAATTTAGA-AATA-CCATATC--C-TTTGAT-AGAACAA-CCAATA-T-TATT-GGGA----AGTTTACAA-ACAAGAATTGTT-ATAA-GTA--CA--AAATCTATTGACTTT--GATAA-TCAAGCAT-T-AT-TAT-TTTCAAG-TAAATACAAA---GA--CCA---A-CCAAC-ACTAA--AT-ACAAGGGT---TCTAAAAACAAT-------T-ATTGT---GG-A-AAG--ATCATGAT--G--GAAAAAATT-TTACTATT-TAAA---AATGT-AAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAG-AAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC---------------TTT--CTT-AC-TAC--TTCTAC--A-T--GACCAT--TGCGCCC----TA--AAATCTGTTC-CTTT-CCT-TTTCTTCCCATTT-ACTTTACTC-TCC---TCTA-CAATTTTCT-CTTATC-CC-CTTT--TC-TATCT--GGGT----T-TTT--ACC-CCCTTCTTTTAA------CTC----TCT------CTCTT--TCTCTC---TCTTCTGTA-TTAAAAAAACAA---------CA--TCA----------C-T------TACTT----------------------TAT---TATA-GTTACAAT-----TCG-TTT-CAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG-ATG-T--AATT-TGA-CATGT--GA-T--T-TGT-A-TTG-AAATGT--G-AGGTTGAAAT-AAA----TA-TGC-AAATAA-AAAAAAAAAttg
gi|8 : ttgcttatggacattatacccagtATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTT--GATAA-TCAAGTAT-T-ATATTT-TTTCAAG-TAAATACAAA---GA--CC----AACCAAC-ACTAA--AT-ACAAGGGT---TCTAAAAACAAT-------T-ATTGT---GGAA-AGA--ATCATGAT--G--GAAAAATTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAG---AAATTTGT-GATGTCTTGTGATT-CAAAT-G-TACA-C-TG-------TATTTTT-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TA-CTTTCTAC--A-T--GACCAT-GTGC-CCC----TAT-AAATCTGTTCTCTTT-CCT-TTTC-TCCCATTT-ACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CC-CTGA--TC-TATCT--GGG-----T-TTTTCTCC-CCCTTCTTTTTACTCTCTCTC----TCT------CTCTTTCTCTCTC---TCTTCTGTA-TTAAAAAAACAA---------CA-TTCA----------CATTGTATGTG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATA--TATG-ATG-T--AATT-TAA-CATGT--GA-T--T-TGTAT-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-GAAAAA
gi|9 : -CATCCATGTGTTTTGAGTAGT-GAAAACTTCACTGCA-AGAA--TT-GGTGCGAATGATATTTGCAA-GAGAGATGGTCTTT-TA--AATAAATTTAGATA-TATCCACATC--C-TTTGAT-AAAACAA-C-AATAATATATTTGGTATAACAGTTTG-GA-ACAAGAATGTTTCATAAAGTAGCCAGAAAATG-ATTGACTTT--GATAAGTCA-GCAT-TTATATTT-TTTCAAGATAAATACAAAAGCGAACCCA---TACCAACCACTAA--AA-ACAAGGGT---TCTAAAA-TAATGCGCGAAT-ACTATCTGGA-A-AGA--ATTATGAT--GTGGAATGGTTTATTACTATTTAAAACTCGATGTGAACTCATACAGAA-TTGG-AGAAAGGAAAAAAACTGGCAGAAAAAGTGTGTTGATGTGTTGTGATTGCAAAT-GATACAAC-TGCATAATATA----T-----TTTT-----TTCTTC-------------T-TTT--CTTTAC-TACTTTTCTACTTA-T--GACCAC-GTGC-CCC----TAT-AAATCTGTTC-CTTT-CCT-TTTC-TCCCATTT-ACTTTACTC-T-CTCGTCTACCAAATTCCT-CTTACC-CCTCTGT--TC-TATCT--G
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CCTACTTCCATCGTAAAACATTACATGTATAAAAATCAACGATACTTTGCAATGATTTCAGGATATAAGGTTAAAATTCAGTGATTTCAGTCTTAGATGATGGATTTTCCAAAGACAAAAATTTGTCAAAGTTGTTCCATCTACAAAAGGTGTTGACTGGAACAATAAAAACCTTTGATTTTGCTAGGTATACGATTCCAGCATTGATTTACAAGGAAAGTGGTGATAAAGTATAAGATGAATGCAGGAAATCTAAAAAAAAAAAAAAAAAAAAAAAACAAAGAAGAAGAAAAAAAAAAAAGGTTATGATGTAGTGGATAAGTCTTTTCTCCTCTAGGTAGACCAACAATAATAAAGAAAACCATTGATTTCCAAATGAATCATTTTTAATTACTTACAATTCCAAACTCTAGAGAGAAAAAGCGTGAAACTGGTTTTTAACAAGGATTCTAGTAAAACTTCTTTCGAACTAAATAAAACTCGTAAAAGAAAAAATAGTCATAATCATTAGAATATGCAAATGGTATAAAAAATTACTGTAAGGAAATTTCTGGCACAGGGATCAGCTTATTCTACATCCAGAAATACAAAAATGGGACAAATACCAGGTGATAGAAATTAATACTGTGTAGATAAACTTGGAGAAGGGAAAGATTATTCATGATTGGAGGTGTTAAAATAATCCAACAGCTTTAGATGAAGTATTTCAGAAACTGGTCAAATAAATTCTGTAAAAGTGAAAATACAACCGAGATTTTCTTTGGATCTTCATCATTCAGAATATTACGTCGGTGGAAAATCAGTATTCTTAAAAAGCGTCAGGTATGATTCAGGCAGTGTAAGTTCATTTATACCTTGAAAAATGGTTTGGTACAAGCTCATTATATACAAAGATGATTTGAAATCCAAAATATTTAAAAAGGCATCTGAGATAAAGAGAGGCAATTTCAAAAAAGACAAATCCTTAACAAGACAATGATTAGAAGACTGGTAATGCTACATTGCCATCACTGCTATCAATCATAACATACAGGTATTTCAAAAACAAAAAGATGTAAAATTCATAAAAATTAAATAGCCAAAAATTACATCCATATCAAAATGGAAAAAAAACAACCAGAAACAGGACATTTTCATGAGTTCGAATGGAAAAAACAAAAATATTCTTGAACCTTGTTTTCAAAGACACACGGAACTAAATAGATAGTGGATGCTACGTCACATGTACTATTCCATGTAATTACTATCTTACAATAAACTAGAATCTGTGATCCTTCAGTCTGCGACATGTTGTAAGAGAACTTGGAGAACTTTGATCAAATTTTTGTAGAATGCCCTTGTTGTTGAAATAAAGAATGACTTTATGAAAAAGACTGGATCAGGCAATATCGCGTTTGAAACAAACTAAT
Unaligned ( gi|4 ): TTCGAACTCATCTCTGGGATTTTTATATATTAAACGACTTGACTTTCAACTTCGGAACATCATAAACAACTGGATAAAAACTTTTTAATATGAATATAATATTGTGTCATTACAAATTGGATAAACTGCAGAAATATTTTCAACCCACAAAGAGGCCTGTAGCAAGGCGAATCCATAATCACCTCTCTTTTTTGCTCTGTGCAGAAGTCTCGGAATAATATAAAAATAATAAAGATAAAAAAGGAATAACAATTGAGGGGAGGAATATAAATTATGCCAGTATGGCGATGATAACTTCATTATTCTCAGATGGATGCACGCCGAATCCATGGTTGTTCATCCTTAGAGAGAGATTATTTGGCTATATGTTTCCGGTCTGTAGATAAAATTTCTCCAAAACTAAAATGGTATGGATTGGCAGTAAATAAAATTTCAAATGAAGGTTTCTATCTATTCCAGATGGAAACTTTGATGCGAAAAATCCAACATTATGATCTTTGGGGATTAAAATTCTCTGTAGACTTAATAGGAATGAATTGAATTGAACTCATAACTCCAAGACTACTTGAAGGTTAAGAACCTCAAAATCGATTGGAAATGTAAGAAAAGTGACCTCTATCGGAAGACTAGTTGTAAATAAAAACTTTAAATTAAATACCAAAGATGAACCATTTGATACTTTGCTGATATACAAATCCTGACCGCAGAATATATAATAATATTTGAAAGACAAGAAAAATTTTTAAGCTATTGATGGGGAAGTCAAATTCATAAAACTCAAAAGAATATACATATCATTCATGAATTAAATGGAGGATTAAAATTGAACAGACTTCCAGAATTTATTACAGCTTTAAAAATCAAGTGGTATAAGAATTCTTCAATCAATTCAATAATGATTACATTTAACTGAGGGCAGAGTTGACAACAAATTCAATAATTTATGGTTGGAGGGACTGACTACAATCCTTACATAGTAAAACAACCAATAAAAATTTTTGGAAAGAGGCTCGTTTTTCCAGCTGGATTCAA
Unaligned ( gi|12 ): CTCAATGGTGATGAATTGAGTTGACAAGTTGTTAATGACCTCAATTAAACCTCAAAAGTAAAACTACCGTATTGAGAAAGATTTATAACACTCATTATATCGATGGAAATTAAGAAAGCTGACCCTATCGGAAGGACTGAGTTGTAATGTAAACTACTTTGATTATACCAAGATGAACCCCATTATAGATTACTATTACCAATCTGACCCATGAACTTAGTGTATATTTACAAAAAAGAT
Unaligned ( gi|22 ): AAAGGAAGTGTTCTATCATACAAGGTGGAAATTTGAATGAAATAAAACCTTTGAATTACTCGGGATAAGATTCAACATTAATTTACAAGAAATGGTTGAAAT
Unaligned ( gi|23 ): ATTTCAAATGAAGTATTTCATCATTCCAGATGGAAACTTGACTGGAAAAATACAACATTTGATCTCTTGGGGATAAAATTCTCTGTAGACCTTAATGGAAT
Alignments
lowQualScore : 1 1 1 1 1 11 1 333333 11 333333333 111111 1 1111 111 11 111111 11 11111 11111 1 11 1 3333333333 111111 333333333333 111111 11 111111 111 111111 1111 1 111 1 11 1111 22 111 111111 111 2222222 111111 11111 222222222 22 22222222 11 333333333333333 111 1111 222222 3333333333333 2222222 111111111 1111 222222 111 222222222 5555555555555555555555555555555555555555555555555555 11111 111 111111 111
lowQualScore : 0 0 3 0 3 66 5 0 3 2 33 2 0 8 333333 11 666666666 222222 5 3 7777 222 11 77 4 8 8 888888 0 0 1 11 1 8 8 66666 66 0 88888 0 3 3 8 1 6 8 0 0 88 0 3 3 6 0000000000 555555 111111111111 666666 999 5 55 666666 7777 5 333 5 999999 0 0 3 55 7777 5 1 5 000 5 1 888 1 5 5 5 22 6 33 5 5 1 1 5 6 5 5 1 2222 5 3 5 1 0 77 77 5 00 5 1 5 5 1 1 5 5 000 77 888888 5 77 5 000 1 1111111 6 666666 6 99 22222 6 99 888 7 77 5 222222222 00 0 5 5 7 3 3 7 88888888 7777 99999 99999 22 111111111111111 44 3 3 000 44 6 99 1 3 3 4444 3 1 1 3 3 7 3 777777 3333333333333 6 6 2 99 3 44 9999999 666 5 999999999 0000 888888 777 222 0 666666666 5 1111111111111111111111111111111111111111111111111111 4 777 00000 4 1 4 000 666 5 000000 3 55 111 3 3 44 3 3 77 9 44 55 555 3 55 4 8888 4 4
lowQualScore : . . . . . .. . . . . .. . . . ...... .. ......... ...... . . .... ... .. .. . . . ...... . . . .. . . . ..... .. . ..... . . . . . . . . . .. . . . . .......... ...... ............ ...... ... . .. ...... .... . ... . ...... . . . .. .... . . . ... . . ... . . . . .. . .. . . . . . . . . . .... . . . . . .. .. . .. . . . . . . . . ... .. ...... . .. . ... . ....... . ...... . .. ..... . .. ... . .. . ......... .. . . . . . . . ........ .... ..... ..... .. ............... .. . . ... .. . .. . . . .... . . . . . . . ...... ............. . . . .. . .. ....... ... . ......... .... ...... ... ... . ......... . .................................................... . ... ..... . . . ... ... . ...... . .. ... . . .. . . .. . .. .. ... . .. . .... . .
lowQualScore : 0 0 2 0 2 55 5 0 2 5 88 5 0 0 666666 00 666666666 000000 4 8 0000 666 88 00 6 0 0 444444 8 8 4 00 4 0 0 22222 44 8 00000 8 6 2 0 4 0 8 8 8 66 8 8 8 7 7777777777 333333 333333333333 444444 333 7 77 444444 9999 7 333 7 333333 1 1 6 99 9999 7 4 7 000 7 4 999 7 0 7 7 11 3 66 7 7 7 4 7 7 7 7 0 1111 7 0 7 7 1 99 99 0 33 7 7 7 7 7 0 7 7 000 99 999999 7 99 7 000 0 7777777 7 000000 7 22 55555 7 66 666 1 99 7 333333333 33 1 7 0 3 6 6 3 77777777 7777 11111 11111 33 888888888888888 66 3 3 111 66 7 22 8 3 3 2222 6 0 2 3 6 3 6 999999 7777777777777 7 7 9 22 3 66 3333333 555 0 111111111 6666 888888 000 888 4 999999999 0 1111111111111111111111111111111111111111111111111111 0 000 00000 0 4 0 000 444 7 555555 6 00 111 3 3 66 3 3 99 5 66 44 222 6 00 0 5555 4 4
consensus : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAAAGACATGTATA--CTATTCTT-ATTAATAGA-AAAA---GAAAAA--ACAAA--GTA-CTTCAANATT--AAAATAGGATATCAT----TCA-ANCTCTATAGAGATGGAACGA-AAT-TTTTT----GAACTTCCTTTTAAAGTCACACAAGAATCAAAA--TTTCA-CTG-GT---TGCAATTTCAAAT----TTTACATAGAATAGT-TCCAACAAACTNCATATCTA-ATTTAAAACT-TT-AAA-----GATTAAA---CAATCCCCAGCA-GT-AGCTTCTGCA------GTAA-T-G-AAATT--GAA------TC-AA-TTGAA-CATCTATTTGTT--GAAT-GTC-A----TTTAGTAAAAGAA-ATTTGG----AATGATATT-G-AA-GAG---TGG-CTTT-TAN--ATAAATTTAGA-A-TATCCGTATC--C-TTTGAT-AGAACAA-C-AATA-T-TATTTGGNA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGATAA-TCAAGCAT-T-ATATNTTT-TCAAG-TAAATACAAA---GA--CCA---AACCAAC-ACTAA--AT-ACAAGGGTTCT---AAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAATTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TACCTTCCTAC--A-T--GACCAT-GTGC-CCC----TAT-ANATCTGTTC-CTTT-CCT-TTTC-TCCCA-TT-ACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CCTCTGT--TC-TATCT--GGG-----T-TTT--NCC-CCCTTCTTTTNA------CTC----TCT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAAAAA
Reference ( family-2753 ) : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAAAGACATGTATA--CTATTCTT-ATTAATAGA-AAAA---GAAAAA--ACAAA--GTA-CTTCAANATT--AAAATAGGATATCAT----TCA-ANCTCTATAGAGATGGAACGA-AAT-TTTTT----GAACTTCCTTTTAAAGTCACACAAGAATCAAAA--TTTCA-CTG-GT---TGCAATTTCAAAT----TTTACATAGAATAGT-TCCAACAAACTNCATATCTA-ATTTAAAACT-TT-AAA-----GATTAAA---CAATCCCCAGCA-GT-AGCTTCTGCA------GTAA-T-G-AAATT--GAA------TC-AA-TTGAA-CATCTATTTGTT--GAAT-GTC-A----TTTAGTAAAAGAA-ATTTGG----AATGATATT-G-AA-GAG---TGG-CTTT-TAN--ATAAATTTAGA-A-TATCCGTATC--C-TTTGAT-AGAACAA-C-AATA-T-TATTTGGNA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGATAA-TCAAGCAT-T-ATATNTTT-TCAAG-TAAATACAAA---GA--CCA---AACCAAC-ACTAA--AT-ACAAGGGTTCT---AAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAATTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TACCTTCCTAC--A-T--GACCAT-GTGC-CCC----TAT-ANATCTGTTC-CTTT-CCT-TTTC-TCCCA-TT-ACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CCTCTGT--TC-TATCT--GGG-----T-TTT--NCC-CCCTTCTTTTNA------CTC----TCT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAAAAA
gi|1 : ACTATGTCAA-TATATTTA-AA--AA-ACATAATAGGTTGTGAAGATATGTATAAGCTATT---------------------GATAAACCATAAA--GTAGC--CAAACTT--AAATCC--ATATCATAATGTGA-AGATTTTCAGAGTTAGAATGG-AAT-TTTTTTTTAGAACTTCCTTTTAAAACAACCCAGGAATCTAAA--TCACA-CTGAGTGGATGCAGTTTCAAAT----TTTACTCAGA-TA-T-TCCATGTAATTGC-TATCTACAT---AAGCT-TT-GAATTGTTGATTCCC---CAATCT---GCA-CT----TTTTGTA------AGA----G-AGACTTGGAA------AC-TA-TTGAT-CACGTTTTTGTA--GAAT-GTCCA----TGTGTTAAAGGGAGATCTGG----TGTGGAATT-G-AA-GAA---TGG---TT-TAATGAAAAACT--GG-A-CAT--GCATTAGC-TTTCAC-AGA-CAAGC-AATT-C-TCCTTGCAA----AATTTGTA---TAAGAATATAC-ATAGGGTG--GA--AAATTTAATAATTCTT--ATAA-TAATGCAA-T-ACATTTATACCAAT-CAATTTTCAA---GA--ATA---AGT--AC-ATTAAGTAT-AGAAGCATCCCCCCAAAAA--AT-------T-GTCAT---CC-ACAGA--ATCACAGT--T--GAGAAACTT-TTGTTACT-GAAAA--ACTGCAGCT--ATAGGGAG-TTTG-A-------AAGATACTGGC--AAAGGATCTAT-GAT
gi|10 : ccaacttctatggatgacattattagagtcctagattacttggcaataatttcaggtctaaggataaatttttcaaagacaaaaatggtgtggataggtagtaaaacattttcaaaggaggttttccatcattcaaggtggaaatttgactggaacaatgaaacattggatttactagggataagattcaacagtaacttacaagaaatggttgaaatgaattataagactaaattaaaggaaattaaaaaggttatgatgcagtggaatagtagaaatcgtactcctttaggaaggctaacagtaataaagacaccaaaattgaatcactcatacttacaataggaaatcatttgtgcttttgaaagggatctttataactttctttagaataataaaactcatataaggttaagaaaaatatcatgatccaagaatggtggtataaaaaaggctgattataaggaatttatcactggtcttttaaagcatggatttgacgtattctacattcaaatgcaaaatggacaaaattattaggtgcagaattaattactggtatagataagctttggagatttggaatagattatattaataattcaagtgtaaaaaaaataccaacagcttttggaaagaagtgtttcagagctggtcaaagatgaattctgtaaatgctgaaaccaacccagatttcttttgtgatcatattttttataatccaaatattactgtcggtggaaaatcagtattttttgaaaacttttaagaattcaggcattgtatttatttctgaccttcttcatgaaaatggtaattggtacaagcttgataatatatacaaattgttttgaaagccaaaatgaattttatagaatatgcaggtttaaagcaagcaattcaacaaagacaagttcttttacaagacaaaataagggctttaaggccacatttgcctattattccatctGTA------GTAAGT-A-AATTT--GAGGCGTATTT-AA-TTGAA-CATCTATTTGTT--GAAT-GTC-A----TTTAGTAAAAGAA-ATTTGG----AATGATATT-G-AA-GAG---TGG-CTTT-TAA--ATAAATTTAGA-A-TATCCGTATC--C-TTTAAT-AAAACAA-C-AATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATGTTT-ATTAAGTA--CA--AAATCTATTGAC--TTTGATAA-TCAAGCAT-T-ATATTTTT-TCAAG-TAAATACAAA---GA--TCGACCAACCAAC-ACTAA--AT-ACAAGGGTTCT---AAaaaattgacca
gi|11 : acttgaattatttatttatttatacgtgcgctacagtgaaaatcccatctctacattacg-CTTT-CCT-TTTC-TCCCA-TTTACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CCCCTGT--TC-TATCT--GGG-----G-TTT--CCC-CCCTTCTTTTTA------CTC----TCT------CACTTTCTCTCTC---TCTTCTGTATT--AAAAAACAATC-------CA-TT-G----------TATG-----TG-TA----------------------TATA--TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTATACAGTAA-TACAG--TATA--TATG-ATG-T--AATT-TGA-CATGT--GA-T--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAA
gi|13 : CTATATTTAAAAAAAAAAACTTATTTACA-TTCA----------CAT------TG-TGATGGTGTATGATACAATTTGATTATAGGTGTAAGGT---AT-----GCA-TATCCAAG-TATG--ATGTGCTTGTTT------A-GACAGGGTATAT-T--G-ATA-TTCAATT-TGA-TTTAT--TGTTGATATGT-TGATG-AAATATTGAAAGGTGAAAAT-AGAAATATATTGC-AAATAA-AAAGAAAA
gi|14 : AAATCG-TACA-CATG--------A----T-----TTTC-----TT--TC-------------CCTTT--GTT-AC-TACCT--CTAC--A-TTTGAC-AT-GTGC-CTCACCATAT-ATATCTGTGC-CTTT-CCCATGTC-TCC------A-TTTACT---------------ATTTCTTGCTT-TCACCTCTGTCATC-TATCT--GGGAGGTTTGTTT--TCT-ACACTCTCT---------CTC----TCCTGACGACTCTTTCTCTCTC---TCT
gi|15 : AAATCG-TACA-CATG--------A----T-----TTTC-----TT--TC-------------CCTTT--GTT-AC-TACCT--CTAC--A-TTTGAC-AT-GTGC-CTCACCATAT-ATATCTGTGC-CTTT-CCCATGTC-TCC------A-TTTACT---------------ATTTCTTGCTT-TCACCTCTGTCATC-TATCT--GGGAGGTTTGTTT--TCT-ACACTCTCT---------CTC----TCCTGACGACTCTTTCTCTCTC---TCT
gi|16 : T-AAAAC--AATGCAAAT--ATACAGAA-TTTGAA-------AAAAAAATGGCAG--AAAATTTGT-GATGTGTTGTG-TT-CAGAT-G-TACA-T-TG-------TA----TAACTGTTTCTGAGATT--TCAAAAAGAAATTTAT-TTTTGCTT-AC-TACC-TCCTAC--A-T--GACCAT-GTGC-CCC----
gi|17 : tttgc------TA-TA----------------------TAT---AGTA-AGC---A--------A-TATCCAAG-TAT---ATGTG---GTAT------A--ACAG--TATAT--ATG-ATA-T--AATT-TGAATATGTT-GATT--T-GTT-T-GAG-AAATGT--GAAGGTTGAAAT-AAA-----ATAGC-AATTAA-AAAAAAATAA
gi|18 : acaacatcacaatgtatgtatatatatataTC---TCTTCCATAT----AAAAATTA---------CA-TTCAATTATTGCATCAT------TA-TG----------------------T-T---TGTA-TAT---ATATGTAGCA-TATACAAG-TAT---ATGT-----TGT------A-CACCG--TATATACATGCATG-A--AATC-CAA-CAAGTTGGATT--T-TAT-G-GCA-AAAT-T--GTAAGCTG
gi|19 : tttttat-CAAAT-G-TACA-C-TG--------A----T-----TTTT-----TT--CCC------------T-TTT--CTT-AC-TACCT-CCTAC--A-T--GACCAT-GTGC-CCC----TAT-ATATCTGTCC-CTTT-CCT-TTTC-TCCCA------TTTACT---------------ATTTCTT-CTTATC-CCTCTGT--TC-TATCT--GGG-----
gi|20 : AAAT-G-TACA-C-TG--------A----T-----TTTT-----TTC-CC-------------T-TTT--CTT-AC-TACC-TCCTAG--AGT--GACCAT-GTG--CCC----TAT-ATATCTG-TC-GCTT-CCT-TTTC-TCCCA------TTTACT---------------ATTTCTT-CTTAT--CCTCTGT--TC-TATCT--GGG-----T-TTT--ggttt
gi|21 : -CAAAT-G-TACA-C-TG--------A----T-----TTTT-----TTC-CC-------------T-TTT--CTT-AC-TACCT--CTAG--AGT--GACTAT-GTG--CCC----TAT-ATATCTGT---CCTT-CCT-TTTC-TCCCA-TT-------------------TA-CATATTCTT-CTTAT--CCTCTGT--TC-TATCT--GGG-----G-TTT--
gi|24 : CTC---TCTTCTGTATT--AAAAAACAA---------CA-TTTA----------------------------------------------------TGTA-GGT---AT-----TCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TTCAG--TTTA--TATG-ATG-T--AATT-TGA-CATGT--GATT--T-
gi|25 : A----------TAT------TA-TA----------------------TAT------A-TGT---AA-----GCA-TATCCAAG-TAT---ATGTG---GTAT--------TACAG--TATAT--ATG-ATA-T--AATT-TGA-TATGT--GTAT--T-TGT-T-Agt
gi|26 : ctcacaatgtatgatatat---ATGTG---GT--------A-TACAG--TATAT--ATG-ATA-T--AATT-TCA-TATGT--GATT--T--GT-A-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATT
gi|27 : CCT-CTTATC-CCTCTGT--TC-TATCTGGGGG-----T-TTT--CCC-CCCTTCTTTTTA------CTCTTTTTCT------CTCTTTCTCTCTC---TCTatata
gi|28 : TAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T--GT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAActc
gi|29 : AACT-TTCAAA-----GAATAGA---AAATCACCA---------CTTCTGCA------GTAA-T-G-AAATT--GAA------TC-AA-TTGA
gi|3 : A-AAAATGGAAAAAA--ACAA---------CCAA------AAAACAGGACATTTT----TCAGAGTTC----GA-ATGGAAAAA-AATATTTTT----GAACTTGTTTTCAAAACAACACAGGAATCTAAA--TAATA-GTG-GA---TGCAG--TCACATACTATTTCCAT---GTAAT-T---ACTATTTACATA---A-ACTTAGAATTGTT---------GATT---------CCTTCAG----------TCTGCACATTTTGTAA-GAG-AAACTTGGAA------AC-TA-TTGAT-CAAATTTTTGTA--GAAT-GCC-C----TT--GT--------GTGTGG----AA--ATA-----AA-GAA---TGA-CTTTATGA--A-AAACT--GG-A-CAGGCATATCG-C-TTTGAT-A-AACAA-
gi|30 : ttttcctacttccatcgatgacattacatgtattaaaatcatacattactttgcaatgatttcaggtctaaggttaaaattcagtgatttcaggtctaatgatggatttttcaaagacaaaaattttcaaaggttttccatcatacaaggtggtttgactggaacaataaaacctttgatttgctaggtataagattcagcatttatttacaagaaatggtgggtatgaaatataagactaaatgcagggaaatctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggttatgatgtagtggataagtctttctcctctaggtagaccaacaataataaagaaaccattgattccaaaattgaatcatttataatacttacaattccaaactctaaagagaaaactaactgtttttaaaagggatctctataacgttctttcgaataataaaactcgtaaagaaaaatatcataatccaattagaatatgctaattatggtataaaaattactgtaaggaatttctggcaacatggattcaactattctacatccaaatacaaaatggacaaaattaccaggtgtagaattaattactggtgtagataaactgtggagaagtggaatagattttattcatgatttgattttaaaaatatcaacagcttttagatagaagtatttcagaactggtcaaagataaattctgtaaaagctggaaacaaccgagatttttcttttgtgcatatctttcatcattcaaatattactgtcggtggaaaatcagtatttcttaaaagcgttcagtatgattcaggcattgtattcatttatgaccttgatgaaaatggtaattggtacaagctcgattatatacaaaatgatttgaaatccaaaatgaattttaaaggcatatgaaggattaaagagagcaattcaaaaaagacaagttcttttacaagacaatgattataaggactgtaaagctacatttgcctaatccatctactatattcaatacatacatgtatttcaaaaacaaaaaagattgtaaattgataaaaattaaagtagccaaaattaaatccatatc-TTT--CTT-AC-TACTTTC-TAC--A-T--GACAAT-TTGC-CCC----TAT-AAATCTGTTC-ataa
gi|31 : TG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AATTAA-AAAAAAA
gi|5 : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAA-GACATGTATA--CTATTCTTTATTAATAGA-GAAA------AAA--ACAAA--GT--CTTCAAAATT--AAAATAGGATATCAT----TCA-ACCTCTATAAGAATG-AACCA-AAT-TTTTG----AAACTTCCTTTTAAAGTCACACAAGA-TCAAAA--CTTCA-CTG-GT-----CAATTTCAAAT----TTTACATAGAATAGTCTCCAACAAACTCCATATCTA--TTTAAA-CT-T---AA-----GATTAAAAAACAATCCCCAGCA-GTGAGCTTCTGCA------GTAA-T-G-AAATT--GAA------TCCAA-TTGAAGCATCTATTTGTT--GAAT-GTC------TTTAGTAAA-GAA-ATTTGGG---AATGAATTT-G-AA-GAG----GG-CTTT-TAT--ATAAATTTAGA-A-TATCC-TATC--C-TTTGAT-AGACAAA-C-AATA-T-ATTTTGGGA----AGTTTACAA-ACAAGAATGTTT-AT-AAGTA--CA--AAATCTATTGAC--TTTGATAA-TC-AGCATAT-ATTTATTT-TTCAG-TAAATACAAA---GA--CCA---ACCCAAC-ACTAA--ATAACAAGGGTTCT---AAAAACAAT-------TAATTGT---GGAA-AGAATATCATGATTGG--AAAAAATTT-TTACTATT---AAC--AATGT--AT--ATACAGAATTTTG-----------AAAACTGGCAG--AAAATTTGT-GA-GTGTTGTGATT-CAAAT-G-TACA-C-TGA------TA----T-----TTTT-----TT--TT-------------TCTTT--CTT-ACTTAACTTCCTAC--A-T--GACCATGGTGC-CCC----TATAATATCTGTTC-CTTTCCCT-TTTC-TCCCATTT-ACTTTACTCTT-C---TCTA-CAATTTTCT-CTTATC-CCCCTGT--TCTTATCT--GGGT----T-TTT--ACCGCCCTTCTTTTAA------CTC----TCT------CTCTTTC-CTTTCCATCCTTCTGTA-TTATAAAAAC-A---------CATTTCA----------CAT------TG-TA----------------------TATA--TGTA-GGT---AT-----GCATTTTCCAAGTTATATAATGTG---GT-T------ATTACAG--TATAT-TATG-ATG-T--AATTATGA-CATGT--GA-T--T-TGT-T-ATGAAAATGT---AAGGTTGAAATAAAA----TATTGC-AAATAA-AAAAA
gi|6 : ACTATGAGAAATTT-TTTAATATCAATACA-AA-GGGATGTAAAGACAT-TATA--CTATTCTT-ATTAATAGATAAAA---GAAAAA--ACAAACAGTA-CTTCAATATTTTAAAAT-GGATATCAT----TTC-ACCTCTATAGA-ATGGAACAAGAAT-TTT------GAATTCCTTTTTAAAGTCACACAAGAATCAAAAACTTTCA-CTG-GT---TACAATTTTCAAT----ATTACATAGAATAGT-TCCAACAAACTTCATATCTA--TTTA---CT-TA-AAA-----GATTAAA---CAATCC--AGCT-GT-AGCTTC-GCA------GTAA-T-GTAAATT--GAA------TC-A--TTGAA-CATCTATTTGT---GAAT-GTC-A----TTTAGTAAAAGAA-ATTTGG----AATGATATT-GGAA-GAG---TGG-CTTT-TAT--ATAA-TTTAGA-A-TATCCATATC--CCTTTGATTAGAACAA-C-AATA-T-TATTTGGGA----AGTTTACAATACAAGAAT-TTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGA-AA-TCAAGCAT-T--TATATTT-TCAAG-TAAATACAAA---GA--CCA-----CCAAC-ACTAA--AT-ACAAGGGTTCT---AAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAATTT-T-ACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAA---TTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TAACTTTCTAC--A-T--GACCAT-GTGC-CCC----TAT-AAATCTGTTC-CTTT-CCT-TT-C-TCCCA-TT-ACTTTACTC-T-C---TCTA-CAATTTTCT-CTTATC-CCCCT-T--TC-TATCT--GGG-----T-TTT--ACC-CCCTTCTTTTAA------CTC-----CT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG--TGTT--AATT-TGA--AT-T--GATT--T-TGT-T-ATG-AAATGT--GGAAGGTGAAAT-AAA----TATTGCAAAATAATAAAAAAAAAA
gi|7 : ACTATGAGAA-TTT-TT-A-TATCA-TACA--A-GGGATGTAAAGACATGTATA--CTATTCTT-ATTAATAGA-AGAA-------AA--ACAA---GTA--TTCAATATT--AAAAT-GGA-ATCAT----TCA---CTCTATAT-GATGGAACAA-AAT-TTTTT----GAACTTCCTTTTAA-GTCACACAAGAATCAAAA--CTTCAACTG-AT---TACAAT--CAA-------TTACATAGA-TAGT-TCCAACAA-CT-CATATCTA-ATTTAAA-CT-TT-AA------GATTAAA---CAATCCCCAGCATGT-AGCTTCTGCA------GTAA-T-G-AAATT--GAA------TC-AAATTGAA-CATCTATTTGTT--GAAT-GTC-A----TTTAGTAAAAGAA-ATTTG-----AATGATATT-G-AAAGAG---TGG-CTTTATAT--ATAAATTTAGA-AATA-CCATATC--C-TTTGAT-AGAACAA-CCAATA-T-TATT-GGGA----AGTTTACAA-ACAAGAATTGTT-ATAA-GTA--CA--AAATCTATTGACTTT--GATAA-TCAAGCAT-T-AT-TATTT-TCAAG-TAAATACAAA---GA--CCA---A-CCAAC-ACTAA--AT-ACAAGGGTTCT---AAAAACAAT-------T-ATTGT---GG-A-AAG--ATCATGAT--G--GAAAAAATT-TTACTATT-TAAA---AATGT-AAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAG-AAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC---------------TTT--CTT-AC-TAC--TTCTAC--A-T--GACCAT--TGCGCCC----TA--AAATCTGTTC-CTTT-CCT-TTTCTTCCCATTT-ACTTTACTC-TCC---TCTA-CAATTTTCT-CTTATC-CC-CTTT--TC-TATCT--GGGT----T-TTT--ACC-CCCTTCTTTTAA------CTC----TCT------CTCTT--TCTCTC---TCTTCTGTA-TTAAAAAAACAA---------CA--TCA----------C-T------TACTT----------------------TAT---TATA-GTTACAAT-----TCG-TTT-CAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG-ATG-T--AATT-TGA-CATGT--GA-T--T-TGT-A-TTG-AAATGT--G-AGGTTGAAAT-AAA----TA-TGC-AAATAA-AAAAAAAAAttg
gi|8 : ttgcttatggacattatacccagtATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTT--GATAA-TCAAGTAT-T-ATATTTTT-TCAAG-TAAATACAAA---GA--CC----AACCAAC-ACTAA--AT-ACAAGGGTTCT---AAAAACAAT-------T-ATTGT---GGAA-AGA--ATCATGAT--G--GAAAAATTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAG---AAATTTGT-GATGTCTTGTGATT-CAAAT-G-TACA-C-TG-------TATTTTT-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TA-CTTTCTAC--A-T--GACCAT-GTGC-CCC----TAT-AAATCTGTTCTCTTT-CCT-TTTC-TCCCATTT-ACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CC-CTGA--TC-TATCT--GGG-----T-TTTTCTCC-CCCTTCTTTTTACTCTCTCTC----TCT------CTCTTTCTCTCTC---TCTTCTGTA-TTAAAAAAACAA---------CA-TTCA----------CATTGTATGTG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATA--TATG-ATG-T--AATT-TAA-CATGT--GA-T--T-TGTAT-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-GAAAAA
gi|9 : -CATCCATGTGTTTTGAGTAGTG-AAAACTTCACTGCAAGAA---TTGGTGCGAATGATATTTGCAA-GAGAGATGGTCTTT-TAA--ATAAATTTAGATA-TATCCACATC--C-TTTGAT-AAAACAA-C-AATAATATATTTGGTATAACAGTTTG-GA-ACAAGAATGTTTCATAAAGTAGCCAGAAAATG-ATTGACTTT--GATAAGTCA-GCAT-TTATATTTTT-TCAAGATAAATACAAAAGCGAACCCA---TACCAACCACTAA--AA-ACAAGGGTTCT---AAAA-TAATGCGCGAAT-ACTATCTGGA-A-AGA--ATTATGAT--GTGGAATGGTTTATTACTATTTAAAACTCGATGTGAACTCATACAGAA-TTGG-AGAAAGGAAAAAAACTGGCAGAAAAAGTGTGTTGATGTGTTGTGATTGCAAAT-GATACAAC-TGCATAATATA----T-----TTTT-----TTCTTC-------------T-TTT--CTTTAC-TACTTTTCTACTTA-T--GACCAC-GTGC-CCC----TAT-AAATCTGTTC-CTTT-CCT-TTTC-TCCCATTT-ACTTTACTC-T-CTCGTCTACCAAATTCCT-CTTACC-CCTCTGT--TC-TATCT--G
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CCTACTTCCATCGTAAAACATTACATGTATAAAAATCAACGATACTTTGCAATGATTTCAGGATATAAGGTTAAAATTCAGTGATTTCAGTCTTAGATGATGGATTTTCCAAAGACAAAAATTTGTCAAAGTTGTTCCATCTACAAAAGGTGTTGACTGGAACAATAAAAACCTTTGATTTTGCTAGGTATACGATTCCAGCATTGATTTACAAGGAAAGTGGTGATAAAGTATAAGATGAATGCAGGAAATCTAAAAAAAAAAAAAAAAAAAAAAAACAAAGAAGAAGAAAAAAAAAAAAGGTTATGATGTAGTGGATAAGTCTTTTCTCCTCTAGGTAGACCAACAATAATAAAGAAAACCATTGATTTCCAAATGAATCATTTTTAATTACTTACAATTCCAAACTCTAGAGAGAAAAAGCGTGAAACTGGTTTTTAACAAGGATTCTAGTAAAACTTCTTTCGAACTAAATAAAACTCGTAAAAGAAAAAATAGTCATAATCATTAGAATATGCAAATGGTATAAAAAATTACTGTAAGGAAATTTCTGGCACAGGGATCAGCTTATTCTACATCCAGAAATACAAAAATGGGACAAATACCAGGTGATAGAAATTAATACTGTGTAGATAAACTTGGAGAAGGGAAAGATTATTCATGATTGGAGGTGTTAAAATAATCCAACAGCTTTAGATGAAGTATTTCAGAAACTGGTCAAATAAATTCTGTAAAAGTGAAAATACAACCGAGATTTTCTTTGGATCTTCATCATTCAGAATATTACGTCGGTGGAAAATCAGTATTCTTAAAAAGCGTCAGGTATGATTCAGGCAGTGTAAGTTCATTTATACCTTGAAAAATGGTTTGGTACAAGCTCATTATATACAAAGATGATTTGAAATCCAAAATATTTAAAAAGGCATCTGAGATAAAGAGAGGCAATTTCAAAAAAGACAAATCCTTAACAAGACAATGATTAGAAGACTGGTAATGCTACATTGCCATCACTGCTATCAATCATAACATACAGGTATTTCAAAAACAAAAAGATGTAAAATTCATAAAAATTAAATAGCCAAAAATTACATCCATATCAAAATGGAAAAAAAACAACCAGAAACAGGACATTTTCATGAGTTCGAATGGAAAAAACAAAAATATTCTTGAACCTTGTTTTCAAAGACACACGGAACTAAATAGATAGTGGATGCTACGTCACATGTACTATTCCATGTAATTACTATCTTACAATAAACTAGAATCTGTGATCCTTCAGTCTGCGACATGTTGTAAGAGAACTTGGAGAACTTTGATCAAATTTTTGTAGAATGCCCTTGTTGTTGAAATAAAGAATGACTTTATGAAAAAGACTGGATCAGGCAATATCGCGTTTGAAACAAACTAAT
Unaligned ( gi|4 ): TTCGAACTCATCTCTGGGATTTTTATATATTAAACGACTTGACTTTCAACTTCGGAACATCATAAACAACTGGATAAAAACTTTTTAATATGAATATAATATTGTGTCATTACAAATTGGATAAACTGCAGAAATATTTTCAACCCACAAAGAGGCCTGTAGCAAGGCGAATCCATAATCACCTCTCTTTTTTGCTCTGTGCAGAAGTCTCGGAATAATATAAAAATAATAAAGATAAAAAAGGAATAACAATTGAGGGGAGGAATATAAATTATGCCAGTATGGCGATGATAACTTCATTATTCTCAGATGGATGCACGCCGAATCCATGGTTGTTCATCCTTAGAGAGAGATTATTTGGCTATATGTTTCCGGTCTGTAGATAAAATTTCTCCAAAACTAAAATGGTATGGATTGGCAGTAAATAAAATTTCAAATGAAGGTTTCTATCTATTCCAGATGGAAACTTTGATGCGAAAAATCCAACATTATGATCTTTGGGGATTAAAATTCTCTGTAGACTTAATAGGAATGAATTGAATTGAACTCATAACTCCAAGACTACTTGAAGGTTAAGAACCTCAAAATCGATTGGAAATGTAAGAAAAGTGACCTCTATCGGAAGACTAGTTGTAAATAAAAACTTTAAATTAAATACCAAAGATGAACCATTTGATACTTTGCTGATATACAAATCCTGACCGCAGAATATATAATAATATTTGAAAGACAAGAAAAATTTTTAAGCTATTGATGGGGAAGTCAAATTCATAAAACTCAAAAGAATATACATATCATTCATGAATTAAATGGAGGATTAAAATTGAACAGACTTCCAGAATTTATTACAGCTTTAAAAATCAAGTGGTATAAGAATTCTTCAATCAATTCAATAATGATTACATTTAACTGAGGGCAGAGTTGACAACAAATTCAATAATTTATGGTTGGAGGGACTGACTACAATCCTTACATAGTAAAACAACCAATAAAAATTTTTGGAAAGAGGCTCGTTTTTCCAGCTGGATTCAA
Unaligned ( gi|12 ): CTCAATGGTGATGAATTGAGTTGACAAGTTGTTAATGACCTCAATTAAACCTCAAAAGTAAAACTACCGTATTGAGAAAGATTTATAACACTCATTATATCGATGGAAATTAAGAAAGCTGACCCTATCGGAAGGACTGAGTTGTAATGTAAACTACTTTGATTATACCAAGATGAACCCCATTATAGATTACTATTACCAATCTGACCCATGAACTTAGTGTATATTTACAAAAAAGAT
Unaligned ( gi|22 ): AAAGGAAGTGTTCTATCATACAAGGTGGAAATTTGAATGAAATAAAACCTTTGAATTACTCGGGATAAGATTCAACATTAATTTACAAGAAATGGTTGAAAT
Unaligned ( gi|23 ): ATTTCAAATGAAGTATTTCATCATTCCAGATGGAAACTTGACTGGAAAAATACAACATTTGATCTCTTGGGGATAAAATTCTCTGTAGACCTTAATGGAAT
Alignments
lowQualScore : 1 1 1 1 1 11 1 333333 11 333333333 111111 1 1111 111 11 111111 11 11111 11111 1 11 1 3333333333 111111 333333333333 111111 11 111111 111 111111 1111 1 111 1 11 1111 22 111 111111 111 2222222 111111 11111 222222222 22 22222222 11 333333333333333 111 1111 222222 3333333333333 2222222 111111111 1111 222222 111 222222222 5555555555555555555555555555555555555555555555555555 11111 111 111111 111
lowQualScore : 0 0 3 0 3 66 5 0 3 2 33 2 0 8 333333 11 666666666 222222 5 3 7777 222 11 77 4 8 8 888888 0 0 1 11 1 8 8 66666 66 0 88888 0 3 3 8 1 6 8 0 0 88 0 3 3 6 0000000000 555555 111111111111 666666 999 5 55 666666 7777 5 333 5 999999 0 0 3 55 7777 5 1 5 000 5 1 888 1 5 5 5 22 6 33 5 5 1 1 5 6 5 5 1 2222 5 3 5 1 0 77 77 5 00 5 1 5 5 1 1 5 5 000 77 888888 5 77 5 000 1 1111111 6 666666 6 99 22222 6 99 888 7 77 5 222222222 00 0 5 5 7 3 3 7 88888888 7777 99999 99999 22 111111111111111 44 3 3 000 44 6 99 1 3 3 4444 3 1 1 3 3 7 3 777777 3333333333333 6 6 2 99 3 44 9999999 666 5 999999999 0000 888888 777 222 0 666666666 5 1111111111111111111111111111111111111111111111111111 4 777 00000 4 1 4 000 666 5 000000 3 55 111 3 3 44 3 3 77 9 44 55 555 3 55 4 8888 4 4
lowQualScore : . . . . . .. . . . . .. . . . ...... .. ......... ...... . . .... ... .. .. . . . ...... . . . .. . . . ..... .. . ..... . . . . . . . . . .. . . . . .......... ...... ............ ...... ... . .. ...... .... . ... . ...... . . . .. .... . . . ... . . ... . . . . .. . .. . . . . . . . . . .... . . . . . .. .. . .. . . . . . . . . ... .. ...... . .. . ... . ....... . ...... . .. ..... . .. ... . .. . ......... .. . . . . . . . ........ .... ..... ..... .. ............... .. . . ... .. . .. . . . .... . . . . . . . ...... ............. . . . .. . .. ....... ... . ......... .... ...... ... ... . ......... . .................................................... . ... ..... . . . ... ... . ...... . .. ... . . .. . . .. . .. .. ... . .. . .... . .
lowQualScore : 0 0 2 0 2 55 5 0 2 5 88 5 0 0 666666 00 666666666 000000 4 8 0000 666 88 00 6 0 0 444444 8 8 4 00 4 0 0 22222 44 8 00000 8 6 2 0 4 0 8 8 8 66 8 8 8 7 7777777777 333333 333333333333 444444 333 7 77 444444 9999 7 333 7 333333 1 1 6 99 9999 7 4 7 000 7 4 999 7 0 7 7 11 3 66 7 7 7 4 7 7 7 7 0 1111 7 0 7 7 1 99 99 0 33 7 7 7 7 7 0 7 7 000 99 999999 7 99 7 000 0 7777777 7 000000 7 22 55555 7 66 666 1 99 7 333333333 33 1 7 0 3 6 6 3 77777777 7777 11111 11111 33 888888888888888 66 3 3 111 66 7 22 8 3 3 2222 6 0 2 3 6 3 6 999999 7777777777777 7 7 9 22 3 66 3333333 555 0 111111111 6666 888888 000 888 4 999999999 0 1111111111111111111111111111111111111111111111111111 0 000 00000 0 4 0 000 444 7 555555 6 00 111 3 3 66 3 3 99 5 66 44 222 6 00 0 5555 4 4
consensus : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAAAGACATGTATA--CTATTCTT-ATTAATAGA-AAAA---GAAAAA--ACAAA--GTA-CTTCAANATT--AAAATAGGATATCAT----TCA-ANCTCTATAGAGATGGAACGA-AAT-TTTTT----GAACTTCCTTTTAAAGTCACACAAGAATCAAAA--TTTCA-CTG-GT---TGCAATTTCAAAT----TTTACATAGAATAGT-TCCAACAAACTNCATATCTA-ATTTAAAACT-TT-AAA-----GATTAAA---CAATCCCCAGCA-GT-AGCTTCTGCA------GTAA-T-G-AAATT--GAA------TC-AA-TTGAA-CATCTATTTGTT--GAAT-GTC-A----TTTAGTAAAAGAA-ATTTGG----AATGATATT-G-AA-GAG---TGG-CTTT-TAN--ATAAATTTAGA-A-TATCCGTATC--C-TTTGAT-AGAACAA-C-AATA-T-TATTTGGNA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGATAA-TCAAGCAT-T-ATATNTTT-TCAAG-TAAATACAAA---GA--CCA---AACCAAC-ACTAA--AT-ACAAGGGTTCT---AAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAATTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TACCTTCCTAC--A-T--GACCAT-GTGC-CCC----TAT-ANATCTGTTC-CTTT-CCT-TTTC-TCCCA-TT-ACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CCTCTGT--TC-TATCT--GGG-----T-TTT--NCC-CCCTTCTTTTNA------CTC----TCT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAAAAA
Reference ( family-2753 ) : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAAAGACATGTATA--CTATTCTT-ATTAATAGA-AAAA---GAAAAA--ACAAA--GTA-CTTCAANATT--AAAATAGGATATCAT----TCA-ANCTCTATAGAGATGGAACGA-AAT-TTTTT----GAACTTCCTTTTAAAGTCACACAAGAATCAAAA--TTTCA-CTG-GT---TGCAATTTCAAAT----TTTACATAGAATAGT-TCCAACAAACTNCATATCTA-ATTTAAAACT-TT-AAA-----GATTAAA---CAATCCCCAGCA-GT-AGCTTCTGCA------GTAA-T-G-AAATT--GAA------TC-AA-TTGAA-CATCTATTTGTT--GAAT-GTC-A----TTTAGTAAAAGAA-ATTTGG----AATGATATT-G-AA-GAG---TGG-CTTT-TAN--ATAAATTTAGA-A-TATCCGTATC--C-TTTGAT-AGAACAA-C-AATA-T-TATTTGGNA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGATAA-TCAAGCAT-T-ATATNTTT-TCAAG-TAAATACAAA---GA--CCA---AACCAAC-ACTAA--AT-ACAAGGGTTCT---AAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAATTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TACCTTCCTAC--A-T--GACCAT-GTGC-CCC----TAT-ANATCTGTTC-CTTT-CCT-TTTC-TCCCA-TT-ACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CCTCTGT--TC-TATCT--GGG-----T-TTT--NCC-CCCTTCTTTTNA------CTC----TCT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAAAAA
gi|1 : ACTATGTCAA-TATATTTA-AA--AA-ACATAATAGGTTGTGAAGATATGTATAAGCTATT---------------------GATAAACCATAAA--GTAGC--CAAACTT--AAATCC--ATATCATAATGTGA-AGATTTTCAGAGTTAGAATGG-AAT-TTTTTTTTAGAACTTCCTTTTAAAACAACCCAGGAATCTAAA--TCACA-CTGAGTGGATGCAGTTTCAAAT----TTTACTCAGA-TA-T-TCCATGTAATTGC-TATCTACAT---AAGCT-TT-GAATTGTTGATTCCC---CAATCT---GCA-CT----TTTTGTA------AGA----G-AGACTTGGAA------AC-TA-TTGAT-CACGTTTTTGTA--GAAT-GTCCA----TGTGTTAAAGGGAGATCTGG----TGTGGAATT-G-AA-GAA---TGG---TT-TAATGAAAAACT--GG-A-CAT--GCATTAGC-TTTCAC-AGA-CAAGC-AATT-C-TCCTTGCAA----AATTTGTA---TAAGAATATAC-ATAGGGTG--GA--AAATTTAATAATTCTT--ATAA-TAATGCAA-T-ACATTTATACCAAT-CAATTTTCAA---GA--ATA---AGT--AC-ATTAAGTAT-AGAAGCATCCCCCCAAAAA--AT-------T-GTCAT---CC-ACAGA--ATCACAGT--T--GAGAAACTT-TTGTTACT-GAAAA--ACTGCAGCT--ATAGGGAG-TTTG-A-------AAGATACTGGC--AAAGGATCTAT-GAT
gi|10 : ccaacttctatggatgacattattagagtcctagattacttggcaataatttcaggtctaaggataaatttttcaaagacaaaaatggtgtggataggtagtaaaacattttcaaaggaggttttccatcattcaaggtggaaatttgactggaacaatgaaacattggatttactagggataagattcaacagtaacttacaagaaatggttgaaatgaattataagactaaattaaaggaaattaaaaaggttatgatgcagtggaatagtagaaatcgtactcctttaggaaggctaacagtaataaagacaccaaaattgaatcactcatacttacaataggaaatcatttgtgcttttgaaagggatctttataactttctttagaataataaaactcatataaggttaagaaaaatatcatgatccaagaatggtggtataaaaaaggctgattataaggaatttatcactggtcttttaaagcatggatttgacgtattctacattcaaatgcaaaatggacaaaattattaggtgcagaattaattactggtatagataagctttggagatttggaatagattatattaataattcaagtgtaaaaaaaataccaacagcttttggaaagaagtgtttcagagctggtcaaagatgaattctgtaaatgctgaaaccaacccagatttcttttgtgatcatattttttataatccaaatattactgtcggtggaaaatcagtattttttgaaaacttttaagaattcaggcattgtatttatttctgaccttcttcatgaaaatggtaattggtacaagcttgataatatatacaaattgttttgaaagccaaaatgaattttatagaatatgcaggtttaaagcaagcaattcaacaaagacaagttcttttacaagacaaaataagggctttaaggccacatttgcctattattccatctGTA------GTAAGT-A-AATTT--GAGGCGTATTT-AA-TTGAA-CATCTATTTGTT--GAAT-GTC-A----TTTAGTAAAAGAA-ATTTGG----AATGATATT-G-AA-GAG---TGG-CTTT-TAA--ATAAATTTAGA-A-TATCCGTATC--C-TTTAAT-AAAACAA-C-AATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATGTTT-ATTAAGTA--CA--AAATCTATTGAC--TTTGATAA-TCAAGCAT-T-ATATTTTT-TCAAG-TAAATACAAA---GA--TCGACCAACCAAC-ACTAA--AT-ACAAGGGTTCT---AAaaaattgacca
gi|11 : acttgaattatttatttatttatacgtgcgctacagtgaaaatcccatctctacattacg-CTTT-CCT-TTTC-TCCCA-TTTACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CCCCTGT--TC-TATCT--GGG-----G-TTT--CCC-CCCTTCTTTTTA------CTC----TCT------CACTTTCTCTCTC---TCTTCTGTATT--AAAAAACAATC-------CA-TT-G----------TATG-----TG-TA----------------------TATA--TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTATACAGTAA-TACAG--TATA--TATG-ATG-T--AATT-TGA-CATGT--GA-T--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAA
gi|13 : CTATATTTAAAAAAAAAAACTTATTTACA-TTCA----------CAT------TG-TGATGGTGTATGATACAATTTGATTATAGGTGTAAGGT---AT-----GCA-TATCCAAG-TATG--ATGTGCTTGTTT------A-GACAGGGTATAT-T--G-ATA-TTCAATT-TGA-TTTAT--TGTTGATATGT-TGATG-AAATATTGAAAGGTGAAAAT-AGAAATATATTGC-AAATAA-AAAGAAAA
gi|14 : AAATCG-TACA-CATG--------A----T-----TTTC-----TT--TC-------------CCTTT--GTT-AC-TACCT--CTAC--A-TTTGAC-AT-GTGC-CTCACCATAT-ATATCTGTGC-CTTT-CCCATGTC-TCC------A-TTTACT---------------ATTTCTTGCTT-TCACCTCTGTCATC-TATCT--GGGAGGTTTGTTT--TCT-ACACTCTCT---------CTC----TCCTGACGACTCTTTCTCTCTC---TCT
gi|15 : AAATCG-TACA-CATG--------A----T-----TTTC-----TT--TC-------------CCTTT--GTT-AC-TACCT--CTAC--A-TTTGAC-AT-GTGC-CTCACCATAT-ATATCTGTGC-CTTT-CCCATGTC-TCC------A-TTTACT---------------ATTTCTTGCTT-TCACCTCTGTCATC-TATCT--GGGAGGTTTGTTT--TCT-ACACTCTCT---------CTC----TCCTGACGACTCTTTCTCTCTC---TCT
gi|16 : T-AAAAC--AATGCAAAT--ATACAGAA-TTTGAA-------AAAAAAATGGCAG--AAAATTTGT-GATGTGTTGTG-TT-CAGAT-G-TACA-T-TG-------TA----TAACTGTTTCTGAGATT--TCAAAAAGAAATTTAT-TTTTGCTT-AC-TACC-TCCTAC--A-T--GACCAT-GTGC-CCC----
gi|17 : tttgc------TA-TA----------------------TAT---AGTA-AGC---A--------A-TATCCAAG-TAT---ATGTG---GTAT------A--ACAG--TATAT--ATG-ATA-T--AATT-TGAATATGTT-GATT--T-GTT-T-GAG-AAATGT--GAAGGTTGAAAT-AAA-----ATAGC-AATTAA-AAAAAAATAA
gi|18 : acaacatcacaatgtatgtatatatatataTC---TCTTCCATAT----AAAAATTA---------CA-TTCAATTATTGCATCAT------TA-TG----------------------T-T---TGTA-TAT---ATATGTAGCA-TATACAAG-TAT---ATGT-----TGT------A-CACCG--TATATACATGCATG-A--AATC-CAA-CAAGTTGGATT--T-TAT-G-GCA-AAAT-T--GTAAGCTG
gi|19 : tttttat-CAAAT-G-TACA-C-TG--------A----T-----TTTT-----TT--CCC------------T-TTT--CTT-AC-TACCT-CCTAC--A-T--GACCAT-GTGC-CCC----TAT-ATATCTGTCC-CTTT-CCT-TTTC-TCCCA------TTTACT---------------ATTTCTT-CTTATC-CCTCTGT--TC-TATCT--GGG-----
gi|20 : AAAT-G-TACA-C-TG--------A----T-----TTTT-----TTC-CC-------------T-TTT--CTT-AC-TACC-TCCTAG--AGT--GACCAT-GTG--CCC----TAT-ATATCTG-TC-GCTT-CCT-TTTC-TCCCA------TTTACT---------------ATTTCTT-CTTAT--CCTCTGT--TC-TATCT--GGG-----T-TTT--ggttt
gi|21 : -CAAAT-G-TACA-C-TG--------A----T-----TTTT-----TTC-CC-------------T-TTT--CTT-AC-TACCT--CTAG--AGT--GACTAT-GTG--CCC----TAT-ATATCTGT---CCTT-CCT-TTTC-TCCCA-TT-------------------TA-CATATTCTT-CTTAT--CCTCTGT--TC-TATCT--GGG-----G-TTT--
gi|24 : CTC---TCTTCTGTATT--AAAAAACAA---------CA-TTTA----------------------------------------------------TGTA-GGT---AT-----TCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TTCAG--TTTA--TATG-ATG-T--AATT-TGA-CATGT--GATT--T-
gi|25 : A----------TAT------TA-TA----------------------TAT------A-TGT---AA-----GCA-TATCCAAG-TAT---ATGTG---GTAT--------TACAG--TATAT--ATG-ATA-T--AATT-TGA-TATGT--GTAT--T-TGT-T-Agt
gi|26 : ctcacaatgtatgatatat---ATGTG---GT--------A-TACAG--TATAT--ATG-ATA-T--AATT-TCA-TATGT--GATT--T--GT-A-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATT
gi|27 : CCT-CTTATC-CCTCTGT--TC-TATCTGGGGG-----T-TTT--CCC-CCCTTCTTTTTA------CTCTTTTTCT------CTCTTTCTCTCTC---TCTatata
gi|28 : TAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T--GT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAActc
gi|29 : AACT-TTCAAA-----GAATAGA---AAATCACCA---------CTTCTGCA------GTAA-T-G-AAATT--GAA------TC-AA-TTGA
gi|3 : A-AAAATGGAAAAAA--ACAA---------CCAA------AAAACAGGACATTTT----TCAGAGTTC----GA-ATGGAAAAA-AATATTTTT----GAACTTGTTTTCAAAACAACACAGGAATCTAAA--TAATA-GTG-GA---TGCAG--TCACATACTATTTCCAT---GTAAT-T---ACTATTTACATA---A-ACTTAGAATTGTT---------GATT---------CCTTCAG----------TCTGCACATTTTGTAA-GAG-AAACTTGGAA------AC-TA-TTGAT-CAAATTTTTGTA--GAAT-GCC-C----TT--GT--------GTGTGG----AA--ATA-----AA-GAA---TGA-CTTTATGA--A-AAACT--GG-A-CAGGCATATCG-C-TTTGAT-A-AACAA-
gi|30 : ttttcctacttccatcgatgacattacatgtattaaaatcatacattactttgcaatgatttcaggtctaaggttaaaattcagtgatttcaggtctaatgatggatttttcaaagacaaaaattttcaaaggttttccatcatacaaggtggtttgactggaacaataaaacctttgatttgctaggtataagattcagcatttatttacaagaaatggtgggtatgaaatataagactaaatgcagggaaatctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggttatgatgtagtggataagtctttctcctctaggtagaccaacaataataaagaaaccattgattccaaaattgaatcatttataatacttacaattccaaactctaaagagaaaactaactgtttttaaaagggatctctataacgttctttcgaataataaaactcgtaaagaaaaatatcataatccaattagaatatgctaattatggtataaaaattactgtaaggaatttctggcaacatggattcaactattctacatccaaatacaaaatggacaaaattaccaggtgtagaattaattactggtgtagataaactgtggagaagtggaatagattttattcatgatttgattttaaaaatatcaacagcttttagatagaagtatttcagaactggtcaaagataaattctgtaaaagctggaaacaaccgagatttttcttttgtgcatatctttcatcattcaaatattactgtcggtggaaaatcagtatttcttaaaagcgttcagtatgattcaggcattgtattcatttatgaccttgatgaaaatggtaattggtacaagctcgattatatacaaaatgatttgaaatccaaaatgaattttaaaggcatatgaaggattaaagagagcaattcaaaaaagacaagttcttttacaagacaatgattataaggactgtaaagctacatttgcctaatccatctactatattcaatacatacatgtatttcaaaaacaaaaaagattgtaaattgataaaaattaaagtagccaaaattaaatccatatc-TTT--CTT-AC-TACTTTC-TAC--A-T--GACAAT-TTGC-CCC----TAT-AAATCTGTTC-ataa
gi|31 : TG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AATTAA-AAAAAAA
gi|5 : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAA-GACATGTATA--CTATTCTTTATTAATAGA-GAAA------AAA--ACAAA--GT--CTTCAAAATT--AAAATAGGATATCAT----TCA-ACCTCTATAAGAATG-AACCA-AAT-TTTTG----AAACTTCCTTTTAAAGTCACACAAGA-TCAAAA--CTTCA-CTG-GT-----CAATTTCAAAT----TTTACATAGAATAGTCTCCAACAAACTCCATATCTA--TTTAAA-CT-T---AA-----GATTAAAAAACAATCCCCAGCA-GTGAGCTTCTGCA------GTAA-T-G-AAATT--GAA------TCCAA-TTGAAGCATCTATTTGTT--GAAT-GTC------TTTAGTAAA-GAA-ATTTGGG---AATGAATTT-G-AA-GAG----GG-CTTT-TAT--ATAAATTTAGA-A-TATCC-TATC--C-TTTGAT-AGACAAA-C-AATA-T-ATTTTGGGA----AGTTTACAA-ACAAGAATGTTT-AT-AAGTA--CA--AAATCTATTGAC--TTTGATAA-TC-AGCATAT-ATTTATTT-TTCAG-TAAATACAAA---GA--CCA---ACCCAAC-ACTAA--ATAACAAGGGTTCT---AAAAACAAT-------TAATTGT---GGAA-AGAATATCATGATTGG--AAAAAATTT-TTACTATT---AAC--AATGT--AT--ATACAGAATTTTG-----------AAAACTGGCAG--AAAATTTGT-GA-GTGTTGTGATT-CAAAT-G-TACA-C-TGA------TA----T-----TTTT-----TT--TT-------------TCTTT--CTT-ACTTAACTTCCTAC--A-T--GACCATGGTGC-CCC----TATAATATCTGTTC-CTTTCCCT-TTTC-TCCCATTT-ACTTTACTCTT-C---TCTA-CAATTTTCT-CTTATC-CCCCTGT--TCTTATCT--GGGT----T-TTT--ACCGCCCTTCTTTTAA------CTC----TCT------CTCTTTC-CTTTCCATCCTTCTGTA-TTATAAAAAC-A---------CATTTCA----------CAT------TG-TA----------------------TATA--TGTA-GGT---AT-----GCATTTTCCAAGTTATATAATGTG---GT-T------ATTACAG--TATAT-TATG-ATG-T--AATTATGA-CATGT--GA-T--T-TGT-T-ATGAAAATGT---AAGGTTGAAATAAAA----TATTGC-AAATAA-AAAAA
gi|6 : ACTATGAGAAATTT-TTTAATATCAATACA-AA-GGGATGTAAAGACAT-TATA--CTATTCTT-ATTAATAGATAAAA---GAAAAA--ACAAACAGTA-CTTCAATATTTTAAAAT-GGATATCAT----TTC-ACCTCTATAGA-ATGGAACAAGAAT-TTT------GAATTCCTTTTTAAAGTCACACAAGAATCAAAAACTTTCA-CTG-GT---TACAATTTTCAAT----ATTACATAGAATAGT-TCCAACAAACTTCATATCTA--TTTA---CT-TA-AAA-----GATTAAA---CAATCC--AGCT-GT-AGCTTC-GCA------GTAA-T-GTAAATT--GAA------TC-A--TTGAA-CATCTATTTGT---GAAT-GTC-A----TTTAGTAAAAGAA-ATTTGG----AATGATATT-GGAA-GAG---TGG-CTTT-TAT--ATAA-TTTAGA-A-TATCCATATC--CCTTTGATTAGAACAA-C-AATA-T-TATTTGGGA----AGTTTACAATACAAGAAT-TTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGA-AA-TCAAGCAT-T--TATATTT-TCAAG-TAAATACAAA---GA--CCA-----CCAAC-ACTAA--AT-ACAAGGGTTCT---AAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAATTT-T-ACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAA---TTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TAACTTTCTAC--A-T--GACCAT-GTGC-CCC----TAT-AAATCTGTTC-CTTT-CCT-TT-C-TCCCA-TT-ACTTTACTC-T-C---TCTA-CAATTTTCT-CTTATC-CCCCT-T--TC-TATCT--GGG-----T-TTT--ACC-CCCTTCTTTTAA------CTC-----CT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG--TGTT--AATT-TGA--AT-T--GATT--T-TGT-T-ATG-AAATGT--GGAAGGTGAAAT-AAA----TATTGCAAAATAATAAAAAAAAAA
gi|7 : ACTATGAGAA-TTT-TT-A-TATCA-TACA--A-GGGATGTAAAGACATGTATA--CTATTCTT-ATTAATAGA-AGAA-------AA--ACAA---GTA--TTCAATATT--AAAAT-GGA-ATCAT----TCA---CTCTATAT-GATGGAACAA-AAT-TTTTT----GAACTTCCTTTTAA-GTCACACAAGAATCAAAA--CTTCAACTG-AT---TACAAT--CAA-------TTACATAGA-TAGT-TCCAACAA-CT-CATATCTA-ATTTAAA-CT-TT-AA------GATTAAA---CAATCCCCAGCATGT-AGCTTCTGCA------GTAA-T-G-AAATT--GAA------TC-AAATTGAA-CATCTATTTGTT--GAAT-GTC-A----TTTAGTAAAAGAA-ATTTG-----AATGATATT-G-AAAGAG---TGG-CTTTATAT--ATAAATTTAGA-AATA-CCATATC--C-TTTGAT-AGAACAA-CCAATA-T-TATT-GGGA----AGTTTACAA-ACAAGAATTGTT-ATAA-GTA--CA--AAATCTATTGACTTT--GATAA-TCAAGCAT-T-AT-TATTT-TCAAG-TAAATACAAA---GA--CCA---A-CCAAC-ACTAA--AT-ACAAGGGTTCT---AAAAACAAT-------T-ATTGT---GG-A-AAG--ATCATGAT--G--GAAAAAATT-TTACTATT-TAAA---AATGT-AAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAG-AAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC---------------TTT--CTT-AC-TAC--TTCTAC--A-T--GACCAT--TGCGCCC----TA--AAATCTGTTC-CTTT-CCT-TTTCTTCCCATTT-ACTTTACTC-TCC---TCTA-CAATTTTCT-CTTATC-CC-CTTT--TC-TATCT--GGGT----T-TTT--ACC-CCCTTCTTTTAA------CTC----TCT------CTCTT--TCTCTC---TCTTCTGTA-TTAAAAAAACAA---------CA--TCA----------C-T------TACTT----------------------TAT---TATA-GTTACAAT-----TCG-TTT-CAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG-ATG-T--AATT-TGA-CATGT--GA-T--T-TGT-A-TTG-AAATGT--G-AGGTTGAAAT-AAA----TA-TGC-AAATAA-AAAAAAAAAttg
gi|8 : ttgcttatggacattatacccagtATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTT--GATAA-TCAAGTAT-T-ATATTTTT-TCAAG-TAAATACAAA---GA--CC----AACCAAC-ACTAA--AT-ACAAGGGTTCT---AAAAACAAT-------T-ATTGT---GGAA-AGA--ATCATGAT--G--GAAAAATTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAG---AAATTTGT-GATGTCTTGTGATT-CAAAT-G-TACA-C-TG-------TATTTTT-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TA-CTTTCTAC--A-T--GACCAT-GTGC-CCC----TAT-AAATCTGTTCTCTTT-CCT-TTTC-TCCCATTT-ACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CC-CTGA--TC-TATCT--GGG-----T-TTTTCTCC-CCCTTCTTTTTACTCTCTCTC----TCT------CTCTTTCTCTCTC---TCTTCTGTA-TTAAAAAAACAA---------CA-TTCA----------CATTGTATGTG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATA--TATG-ATG-T--AATT-TAA-CATGT--GA-T--T-TGTAT-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-GAAAAA
gi|9 : -CATCCATGTGTTTTGAGTAGTG-AAAACTTCACTGCAAGAA---TTGGTGCGAATGATATTTGCAA-GAGAGATGGTCTTT-TAA--ATAAATTTAGATA-TATCCACATC--C-TTTGAT-AAAACAA-C-AATAATATATTTGGTATAACAGTTTG-GA-ACAAGAATGTTTCATAAAGTAGCCAGAAAATG-ATTGACTTT--GATAAGTCA-GCAT-TTATATTTTT-TCAAGATAAATACAAAAGCGAACCCA---TACCAACCACTAA--AA-ACAAGGGTTCT---AAAA-TAATGCGCGAAT-ACTATCTGGA-A-AGA--ATTATGAT--GTGGAATGGTTTATTACTATTTAAAACTCGATGTGAACTCATACAGAA-TTGG-AGAAAGGAAAAAAACTGGCAGAAAAAGTGTGTTGATGTGTTGTGATTGCAAAT-GATACAAC-TGCATAATATA----T-----TTTT-----TTCTTC-------------T-TTT--CTTTAC-TACTTTTCTACTTA-T--GACCAC-GTGC-CCC----TAT-AAATCTGTTC-CTTT-CCT-TTTC-TCCCATTT-ACTTTACTC-T-CTCGTCTACCAAATTCCT-CTTACC-CCTCTGT--TC-TATCT--G
blockSeqs : A . T A T AT T . A G . C T T TGGAAA . ACAGTACT TATTTT A C . GAG TA GA A G A TT T AC A A . TG TT ACTAT G A C T T A A G A G TCAAA AAAAAA CCAGCAGTGAG CATTTT GT T TG GCGTAT CAA G TTT A AAAAC A A TGCG T G A AGA T A A T T T A TC G G C T A A . C A A T TAAC T G C T GC GA T TT G A A T A T . A AGC AC GACCAA C . A . C GCGCGAA A CTGGA . AT TGG A TA CTC A TC T AGAAAGGA AA T G C A A A CATAATAT TTTT AACTG TGAGA CT AAAAAGAAATTTAT TG T T TTC TT G TT C G G ACCA A T G T C A T TTTAC CTCTCGTCTAC G A T CA T GG AGGTTTG TCT G TTACTCTCT TTTT TGACGA CAT TTT ACTTATTTA T CATTGTGATGGTGTATGATACAATTTGATTATAGG A ACA ATGTA T A T ATA CTT T . T GG TAC C T TC A A TG T GA AT TG A TG A AATA A T
blockSeqs : . . T . T AT . . A G . C . . GAA . AGTCT AATT A T . AC TA A C . . TG A . T . . TA TT T A G . A A C A A A . AAAA AGA CCAGCATGTAG . GA . . . AAA . T . A A G G . C . . . A A T T . . GG A . . . G A . . . . G . . G . A . . T TT . A . . T A . . . . AAC . . . . C . . GGA . . GTG . A C A . . AA AA . . . . . . AT . . . C CC . . . TTC . G . C . . . . T C . . A . TTTAC CTTCTCTA G A T CA . . AGGTTTG T . TTA . TGACGA . TTT . . ATTATTGCATCATTATGTT . . . . A . G . A . . . TT . . . . . T T . G AT . . . . . .
blockSeqs : . . . . T T . . . . . C . . . . GTAT TATT . T . AC TA A A . . TT A . T . . TA T A A G . A A T . A . . TAA AAA AGCTGTAG . T . . . AA . A . C A A . . . . . . . T T T . . TC A . . . G C . . . . G . . T . A . . T TT . A . . A A . . . . ATA . . . . C . . GGA . . G . A C A . . A A . . . . . . T . . . C CT . . . TTT . . . C . . . . T T . . . . TTTAC CTCCTCTA . . T . . . TT T . TAA . . . TT . . CATTGTATGTGTATAT . . . . A . . . G . . . TT . . . . . . T . T T . . . . . .
blockSeqs : . . . . . . . . . . G A . . . A . T . . . . . . G . A . . . . . . AA AAA TCAG . T . . . AA . T . A A A . . . . . . . T T T . . TC A . . . G A . . . . G . . G . A . . T . . A . . A A . . . . AA . . . . C . . GG . . G . T C G . . A . . . . . . . T . . . . TC . . . TTT . . . T . . . . T T . . . . TTTAC CTCTCTA . . T . . . TT C . TAA . . . TT . . CATTGTATATA . . . . T . . . G . . . TT . . . . . . T . T G . . . . . .
blockSeqs : . . T . CCA . T . . . TA . T . A . A . . . . . . . T T T . . TC A . . . A A . . . . T . . G . A . . . . . A . . A T . . . . AA . . . . T . . GG . . G . A C . . . A . . . . . . . T . . . . T . . . TTT . . . A . . . . A T . . . . TTAC CTCTCTA . . T . . . T A . TAA . . . TT . . TATTATATAT . . . . A . . . A . . . TT . . . . . . A . T T . . . . . .
blockSeqs : . T . . . A . . . . . . . . . . . . . A . . . . C . . . . . A . . . T . . . . . . . . . . . . . . T . . . . A . . . . . . . . . . . . . . . . . T . . . . T . . . TC . . . C . . . . T T . . . . TT TA . . T . . . G A . . . . . TT . . CATTGTATAT . . . . T . . . G . . . TT . . . . . . T . T A . . . . . .
blockSeqs : . . . . . . . . . . T . . . TC . . . C . . . . A T . . . . A . . . C . . . T A . . . . . T . . CTTACTTTAT . . . . T . . . G . . . T . . . . . . T . T T . . . . . .
blockSeqs : . . . . . . . . . T . . . TC . . . C . . . . A T . . . . A . . . C . . . T . . . . . . T . . . G . . . T . . . . . . T . T T . . . . . .
blockSeqs : . . . . . . . . . T . . . TT . . . C . . . . A T . . . . . . . . T . . . T . . . . . T . . . . . . . T . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . T . . . C . . . . A . . . . . . . . . . . . . . . . . . . T . . . . . . . . . A . .
blockSeqs : . . . T . . . . . . . . . . . . . . T . . . . . . . .
blockSeqCons : GG**** ** GTT****** **** A* TT**** TA*** ** TAA******* CCAGCGTAG*** T** ** A***** A* N** TC ** TT ** *** AA T************** TTC ** **** CTCTCTA****** ********* ****** TT*
originalCons : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAAAGACATGTATA--CTATTCTT-ATTAATAGA-AAAA---GAAAAA--ACAAA--GTA-CTTCAANATT--AAAATAGGATATCAT----TCA-ANCTCTATAGAGATGGAACGA-AAT-TTTTT----GAACTTCCTTTTAAAGTCACACAAGAATCAAAA--TTTCA-CTG-GT---TGCAATTTCAAAT----TTTACATAGAATAGT-TCCAACAAACTNCATATCTA-ATTTAAAACT-TT-AAA-----GATTAAA---CAATCCCCAGCA-GT-AGCTTCTGCA------GTAA-T-G-AAATT--GAA------TC-AA-TTGAA-CATCTATTTGTT--GAAT-GTC-A----TTTAGTAAAAGAA-ATTTGG----AATGATATT-G-AA-GAG---TGG-CTTT-TAN--ATAAATTTAGA-A-TATCCGTATC--C-TTTGAT-AGAACAA-C-AATA-T-TATTTGGNA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGATAA-TCAAGCAT-T-ATATNTTT-TCAAG-TAAATACAAA---GA--CCA---AACCAAC-ACTAA--AT-ACAAGGGTTCT---AAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAATTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TACCTTCCTAC--A-T--GACCAT-GTGC-CCC----TAT-ANATCTGTTC-CTTT-CCT-TTTC-TCCCA-TT-ACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CCTCTGT--TC-TATCT--GGG-----T-TTT--NCC-CCCTTCTTTTNA------CTC----TCT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAAAAA
finalCons : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAAAGACATGTATA--CTATTCTT-ATTAATAGA-AAAAGG----AAA--ACAAGTT------TCAANATT--AAAATAGGATATCAT----TCA-ANCTCTATAGA-ATGGAACGA-AAT-TTTTT----GAACTTCCTTTTAAAGTCACACAAGAATCAAAA--TTTCA-CTG-GTTA---CAATTTCAAAT----TTTACATAGAATAGT-TCCAACAAACTNCATATCTA--TTTAAAACT-TTAA-------GATTAAA---CAATCCCCAGCGTAG---CTTCTGCA------GTAAT--G-AAATT--GAA------TC-AA-TTGAA-CATCTATTTGTT--GAAT-GTCA-----TTTAGTAAAAGAAA-TTTGG----AATGATATT-G-AA-GAG---TGG-CTTT-TAN--ATAAATTTAGA-A-TATCCGTATC--C-TTTGAT-AGAACAA-C-AATA-T-TATTTGGNA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGATAA-TCAAGCAT-T-ATATNTTT-TCAAG-TAAATACAAA---GA--CCA---AACCAAC-ACTAA--AT-ACAAGGGTTCT---AAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAATTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TCT--------------TTT--CTT-AC-TACCTTCCTAC--A-T--GACCAT-GTGC-CCC----TAT-ANATCTGTTC-CTTT-CCT-TTTC-TCCCA-TT-ACTTTACTCTCTCTA------CAATTTCCT-CTTATC-CCTCTGT--TC-TATCT--GGG-----T-TTT--NCC-CCCTTCTTTTNA------CTC----TCT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATATT-ATG-ATG-T--AATT-TGA-CATGT--GATT--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAAAAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CCTACTTCCATCGTAAAACATTACATGTATAAAAATCAACGATACTTTGCAATGATTTCAGGATATAAGGTTAAAATTCAGTGATTTCAGTCTTAGATGATGGATTTTCCAAAGACAAAAATTTGTCAAAGTTGTTCCATCTACAAAAGGTGTTGACTGGAACAATAAAAACCTTTGATTTTGCTAGGTATACGATTCCAGCATTGATTTACAAGGAAAGTGGTGATAAAGTATAAGATGAATGCAGGAAATCTAAAAAAAAAAAAAAAAAAAAAAAACAAAGAAGAAGAAAAAAAAAAAAGGTTATGATGTAGTGGATAAGTCTTTTCTCCTCTAGGTAGACCAACAATAATAAAGAAAACCATTGATTTCCAAATGAATCATTTTTAATTACTTACAATTCCAAACTCTAGAGAGAAAAAGCGTGAAACTGGTTTTTAACAAGGATTCTAGTAAAACTTCTTTCGAACTAAATAAAACTCGTAAAAGAAAAAATAGTCATAATCATTAGAATATGCAAATGGTATAAAAAATTACTGTAAGGAAATTTCTGGCACAGGGATCAGCTTATTCTACATCCAGAAATACAAAAATGGGACAAATACCAGGTGATAGAAATTAATACTGTGTAGATAAACTTGGAGAAGGGAAAGATTATTCATGATTGGAGGTGTTAAAATAATCCAACAGCTTTAGATGAAGTATTTCAGAAACTGGTCAAATAAATTCTGTAAAAGTGAAAATACAACCGAGATTTTCTTTGGATCTTCATCATTCAGAATATTACGTCGGTGGAAAATCAGTATTCTTAAAAAGCGTCAGGTATGATTCAGGCAGTGTAAGTTCATTTATACCTTGAAAAATGGTTTGGTACAAGCTCATTATATACAAAGATGATTTGAAATCCAAAATATTTAAAAAGGCATCTGAGATAAAGAGAGGCAATTTCAAAAAAGACAAATCCTTAACAAGACAATGATTAGAAGACTGGTAATGCTACATTGCCATCACTGCTATCAATCATAACATACAGGTATTTCAAAAACAAAAAGATGTAAAATTCATAAAAATTAAATAGCCAAAAATTACATCCATATCAAAATGGAAAAAAAACAACCAGAAACAGGACATTTTCATGAGTTCGAATGGAAAAAACAAAAATATTCTTGAACCTTGTTTTCAAAGACACACGGAACTAAATAGATAGTGGATGCTACGTCACATGTACTATTCCATGTAATTACTATCTTACAATAAACTAGAATCTGTGATCCTTCAGTCTGCGACATGTTGTAAGAGAACTTGGAGAACTTTGATCAAATTTTTGTAGAATGCCCTTGTTGTTGAAATAAAGAATGACTTTATGAAAAAGACTGGATCAGGCAATATCGCGTTTGAAACAAACTAAT
Unaligned ( gi|4 ): TTCGAACTCATCTCTGGGATTTTTATATATTAAACGACTTGACTTTCAACTTCGGAACATCATAAACAACTGGATAAAAACTTTTTAATATGAATATAATATTGTGTCATTACAAATTGGATAAACTGCAGAAATATTTTCAACCCACAAAGAGGCCTGTAGCAAGGCGAATCCATAATCACCTCTCTTTTTTGCTCTGTGCAGAAGTCTCGGAATAATATAAAAATAATAAAGATAAAAAAGGAATAACAATTGAGGGGAGGAATATAAATTATGCCAGTATGGCGATGATAACTTCATTATTCTCAGATGGATGCACGCCGAATCCATGGTTGTTCATCCTTAGAGAGAGATTATTTGGCTATATGTTTCCGGTCTGTAGATAAAATTTCTCCAAAACTAAAATGGTATGGATTGGCAGTAAATAAAATTTCAAATGAAGGTTTCTATCTATTCCAGATGGAAACTTTGATGCGAAAAATCCAACATTATGATCTTTGGGGATTAAAATTCTCTGTAGACTTAATAGGAATGAATTGAATTGAACTCATAACTCCAAGACTACTTGAAGGTTAAGAACCTCAAAATCGATTGGAAATGTAAGAAAAGTGACCTCTATCGGAAGACTAGTTGTAAATAAAAACTTTAAATTAAATACCAAAGATGAACCATTTGATACTTTGCTGATATACAAATCCTGACCGCAGAATATATAATAATATTTGAAAGACAAGAAAAATTTTTAAGCTATTGATGGGGAAGTCAAATTCATAAAACTCAAAAGAATATACATATCATTCATGAATTAAATGGAGGATTAAAATTGAACAGACTTCCAGAATTTATTACAGCTTTAAAAATCAAGTGGTATAAGAATTCTTCAATCAATTCAATAATGATTACATTTAACTGAGGGCAGAGTTGACAACAAATTCAATAATTTATGGTTGGAGGGACTGACTACAATCCTTACATAGTAAAACAACCAATAAAAATTTTTGGAAAGAGGCTCGTTTTTCCAGCTGGATTCAA
Unaligned ( gi|12 ): CTCAATGGTGATGAATTGAGTTGACAAGTTGTTAATGACCTCAATTAAACCTCAAAAGTAAAACTACCGTATTGAGAAAGATTTATAACACTCATTATATCGATGGAAATTAAGAAAGCTGACCCTATCGGAAGGACTGAGTTGTAATGTAAACTACTTTGATTATACCAAGATGAACCCCATTATAGATTACTATTACCAATCTGACCCATGAACTTAGTGTATATTTACAAAAAAGAT
Unaligned ( gi|22 ): AAAGGAAGTGTTCTATCATACAAGGTGGAAATTTGAATGAAATAAAACCTTTGAATTACTCGGGATAAGATTCAACATTAATTTACAAGAAATGGTTGAAAT
Unaligned ( gi|23 ): ATTTCAAATGAAGTATTTCATCATTCCAGATGGAAACTTGACTGGAAAAATACAACATTTGATCTCTTGGGGATAAAATTCTCTGTAGACCTTAATGGAAT
Alignments
lowQualScore : 1 1 1 1 1 11 11 555555555555555555555555555555555555555 11 1 22222222222 1111 2222 1 111 11 11111 111111111 1 1111 1111111 555555555 333333 111 11 22222222 111 11111 1111 1 111 1 11 1111 22 111 111111 111 2222222 111111 11111 222222222 22 22222222 11 333333333333333 111 1111 222222 3333333333333 2222222 111111111 1111 222222 111 222222222 5555555555555555555555555555555555555555555555555555 11111 111 111111 111
lowQualScore : 0 0 3 0 3 66 5 0 7 2 33 22 555555555555555555555555555555555555555 66 8 1 99999999999 4444 1111 3 111 6 0 11 1 8 8 66666 333333333 0 66 5 8 222 0 8 0 33 5555 99 77 4444444 99 222222222 222222 555 5 55 00000000 5 5 333 5 5 33333 0 7 5 0 5 2222 5 1 5 000 5 1 888 1 5 5 5 22 6 33 5 5 1 5 6 5 5 1 2222 0 5 3 5 1 0 77 77 5 00 5 1 5 5 1 1 5 5 000 77 888888 5 77 5 000 7 1111111 6 666666 6 99 22222 6 99 888 7 77 5 222222222 00 0 5 5 7 3 3 7 88888888 7777 99999 99999 22 111111111111111 44 3 3 000 44 6 99 1 3 3 4444 3 1 1 3 3 7 3 777777 3333333333333 6 6 2 99 3 44 9999999 666 5 999999999 0000 888888 777 222 0 666666666 5 1111111111111111111111111111111111111111111111111111 4 777 00000 4 1 4 000 666 5 000000 3 55 111 3 3 44 3 3 77 9 44 55 555 3 55 4 8888 4 4
lowQualScore : . . . . . .. . . . . .. .. ....................................... .. . . ........... .... .... . ... . . .. . . . ..... ......... . .. . . ... . . . .. .... .. .. ....... .. ......... ...... ... . .. ........ . . ... . . ..... . . . . . .... . . . ... . . ... . . . . .. . .. . . . . . . . . .... . . . . . . .. .. . .. . . . . . . . . ... .. ...... . .. . ... . ....... . ...... . .. ..... . .. ... . .. . ......... .. . . . . . . . ........ .... ..... ..... .. ............... .. . . ... .. . .. . . . .... . . . . . . . ...... ............. . . . .. . .. ....... ... . ......... .... ...... ... ... . ......... . .................................................... . ... ..... . . . ... ... . ...... . .. ... . . .. . . .. . .. .. ... . .. . .... . .
lowQualScore : 0 0 2 0 2 55 5 0 0 5 88 55 888888888888888888888888888888888888888 55 2 7 77777777777 2222 5555 3 777 7 3 00 4 0 0 66666 666666666 8 44 0 0 888 8 8 6 66 6666 22 77 3333333 22 000000000 999999 000 7 77 66666666 7 7 333 7 7 66666 1 1 7 1 7 1111 7 4 7 000 7 4 999 7 0 7 7 11 3 66 7 7 7 7 7 7 7 0 1111 1 7 0 7 7 1 99 99 0 33 7 7 7 7 7 0 7 7 000 99 999999 7 99 7 000 3 7777777 7 000000 7 22 55555 7 66 666 1 99 7 333333333 33 1 7 0 3 6 6 3 77777777 7777 11111 11111 33 888888888888888 66 3 3 111 66 7 22 8 3 3 2222 6 0 2 3 6 3 6 999999 7777777777777 7 7 9 22 3 66 3333333 555 0 111111111 6666 888888 000 888 4 999999999 0 1111111111111111111111111111111111111111111111111111 0 000 00000 0 4 0 000 444 7 555555 6 00 111 3 3 66 3 3 99 5 66 44 222 6 00 0 5555 4 4
consensus : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAAAGACATGTATA--CTATTC-TTATTAATAGA--AAAAGAAAAA-C-AA---GT--TT----CAATATT--AAAATA-GGACATCATTCA--ANCTCTAT-AGAATGG----AAC-AA-AAT-TTTTT---GAA-CTTCCTTTTAAAGTCACACAGGAATCAAAA--TTTCA-CTG-GT---TGCAATTTCAAATTTTACATAGAATAGT-TCCAACAAACTNCATATCTACTTAAAACTTT--AA-GATT---AAACAATCCC--CAGC--GT-AGCTTCTGCA------GTAA-T-G-AAATT--GAA------T-CAA-TTGAA-CATCTATTTGTT--GAAT-GT-CA----TTTAGTAAA-AGAAATTT-GG----AATGATATT-G-AA-GAG---TGG-CTTT-TA--NATAAATTTAGA-A-TATCCGTATC--C-TTTGAT-AGAACAA-C-AATA-T-TATTTGGNA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGATAA-TCAAGCAT-T-ATATNT-TTTCAAG-TAAATACAAA---GA--CCA---AACCAAC-ACTAA--AT-ACAAGGGT---TCTAAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAATTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TACCTTCCTAC--A-T--GACCAT-GTGC-CCC----TAT-ANATCTGTTC-CTTT-CCT-TTTC-TCCCA-TT-ACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CCTCTGT--TC-TATCT--GGG-----T-TTT--NCC-CCCTTCTTTTNA------CTC----TCT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAAAAA
Reference ( family-2753 ) : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGTAAAGACATGTATA--CTATTC-TTATTAATAGA--AAAAGGAAAA-C-AA---GT--TT----CAANATT--AAAATA-GGATATCATTCA--ANCTCTAT-AGAATGG----AAC-GA-AAT-TTTTT---GAA-CTTCCTTTTAAAGTCACACAAGAATCAAAA--TTTCA-CTG-GT---TACAATTTCAAATTTTACATAGAATAGT-TCCAACAAACTNCATATCTATTTAAAACTTT--AA-GATT---AAACAATCCC--CAGC--GT-AGCTTCTGCA------GTAA-T-G-AAATT--GAA------T-CAA-TTGAA-CATCTATTTGTT--GAAT-GT-CA----TTTAGTAAA-AGAAATTT-GG----AATGATATT-G-AA-GAG---TGG-CTTT-TA--NATAAATTTAGA-A-TATCCGTATC--C-TTTGAT-AGAACAA-C-AATA-T-TATTTGGNA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGATAA-TCAAGCAT-T-ATATNT-TTTCAAG-TAAATACAAA---GA--CCA---AACCAAC-ACTAA--AT-ACAAGGGT---TCTAAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAATTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TACCTTCCTAC--A-T--GACCAT-GTGC-CCC----TAT-ANATCTGTTC-CTTT-CCT-TTTC-TCCCA-TT-ACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CCTCTGT--TC-TATCT--GGG-----T-TTT--NCC-CCCTTCTTTTNA------CTC----TCT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAAAAA
gi|1 : ACTATGTCAA-TATATTTA-AA--AA-ACATAATAGGTTGTGAAGATATGTATAAGCTATT-------GATAAACCATAAAGTAGC-C-AA---AC--TTAAATCCATATC--ATAATGTGAAGATT-TTCA--GAGT---T-AGAATGG----AAT------T-TTTTTTTAGAA-CTTCCTTTTAAAACAACCCAGGAATCTAAA--TCACA-CTGAGTGGATGCAGTTTCAAATTTTACTCAG-ATA-T-TCCATGTAATTGC-TATCTACAT-AAGCTTT--GA--ATT---GTTGATTCCC--CAA----------TCTGCACTTTTTGTAA-GAG-AGACTTGGAA------A-CTA-TTGAT-CACGTTTTTGTA--GAAT-GTCCA----TGTGTTAAAGGGAGATCT-GG----TGTGGAATT-G-AA-GAA---TGG---TT-TAATGAAAAACT--GG-A-CAT--GCATTAGC-TTTCAC-AG-ACAAGC-AATT-C-TCCTTGCAA----AATTTGT---ATAAGAATATAC-ATAGGGTG--GA--AAATTTAATAATTCTT--ATAA-TAATGCAA-T-ACATTTATACCAAT-CAATTTTCAA---GA--ATA---AGT--AC-ATTAAGTAT-AGAAGCATCCCCCCAAAA--AAT-------T-GTCAT---CC-ACAGA--ATCACAGT--T--GAGAAACTT-TTGTTACT-GAAAA--ACTGCAGCT--ATAGGGAG-TTTG-A-------AAGATACTGGC--AAAGGATCTAT-GAT
gi|10 : ccaacttctatggatgacattattagagtcctagattacttggcaataatttcaggtctaaggataaatttttcaaagacaaaaatggtgtggataggtagtaaaacattttcaaaggaggttttccatcattcaaggtggaaatttgactggaacaatgaaacattggatttactagggataagattcaacagtaacttacaagaaatggttgaaatgaattataagactaaattaaaggaaattaaaaaggttatgatgcagtggaatagtagaaatcgtactcctttaggaaggctaacagtaataaagacaccaaaattgaatcactcatacttacaataggaaatcatttgtgcttttgaaagggatctttataactttctttagaataataaaactcatataaggttaagaaaaatatcatgatccaagaatggtggtataaaaaaggctgattataaggaatttatcactggtcttttaaagcatggatttgacgtattctacattcaaatgcaaaatggacaaaattattaggtgcagaattaattactggtatagataagctttggagatttggaatagattatattaataattcaagtgtaaaaaaaataccaacagcttttggaaagaagtgtttcagagctggtcaaagatgaattctgtaaatgctgaaaccaacccagatttcttttgtgatcatattttttataatccaaatattactgtcggtggaaaatcagtattttttgaaaacttttaagaattcaggcattgtatttatttctgaccttcttcatgaaaatggtaattggtacaagcttgataatatatacaaattgttttgaaagccaaaatgaattttatagaatatgcaggtttaaagcaagcaattcaacaaagacaagttcttttacaagacaaaataagggctttaaggccacatttgcctattattccatctGTA------GTAAGT-A-AATTT--GAGGCGTATT-TAA-TTGAA-CATCTATTTGTT--GAAT-GT-CA----TTTAGTAAA-AGAAATTT-GG----AATGATATT-G-AA-GAG---TGG-CTTT-TA--AATAAATTTAGA-A-TATCCGTATC--C-TTTAAT-AAAACAA-C-AATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATGTTT-ATTAAGTA--CA--AAATCTATTGAC--TTTGATAA-TCAAGCAT-T-ATATTT-TTTCAAG-TAAATACAAA---GA--TCGACCAACCAAC-ACTAA--AT-ACAAGGGT---TCTAAaaaattgacca
gi|11 : acttgaattatttatttatttatacgtgcgctacagtgaaaatcccatctctacattacg-CTTT-CCT-TTTC-TCCCA-TTTACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CCCCTGT--TC-TATCT--GGG-----G-TTT--CCC-CCCTTCTTTTTA------CTC----TCT------CACTTTCTCTCTC---TCTTCTGTATT--AAAAAACAATC-------CA-TT-G----------TATG-----TG-TA----------------------TATA--TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTATACAGTAA-TACAG--TATA--TATG-ATG-T--AATT-TGA-CATGT--GA-T--T-TGT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAA
gi|13 : CTATATTTAAAAAAAAAAACTTATTTACA-TTCA----------CAT------TG-TGATGGTGTATGATACAATTTGATTATAGGTGTAAGGT---AT-----GCA-TATCCAAG-TATG--ATGTGCTTGTTT------A-GACAGGGTATAT-T--G-ATA-TTCAATT-TGA-TTTAT--TGTTGATATGT-TGATG-AAATATTGAAAGGTGAAAAT-AGAAATATATTGC-AAATAA-AAAGAAAA
gi|14 : AAATCG-TACA-CATG--------A----T-----TTTC-----TT--TC-------------CCTTT--GTT-AC-TACCT--CTAC--A-TTTGAC-AT-GTGC-CTCACCATAT-ATATCTGTGC-CTTT-CCCATGTC-TCC------A-TTTACT---------------ATTTCTTGCTT-TCACCTCTGTCATC-TATCT--GGGAGGTTTGTTT--TCT-ACACTCTCT---------CTC----TCCTGACGACTCTTTCTCTCTC---TCT
gi|15 : AAATCG-TACA-CATG--------A----T-----TTTC-----TT--TC-------------CCTTT--GTT-AC-TACCT--CTAC--A-TTTGAC-AT-GTGC-CTCACCATAT-ATATCTGTGC-CTTT-CCCATGTC-TCC------A-TTTACT---------------ATTTCTTGCTT-TCACCTCTGTCATC-TATCT--GGGAGGTTTGTTT--TCT-ACACTCTCT---------CTC----TCCTGACGACTCTTTCTCTCTC---TCT
gi|16 : T-AAAAC--AATGCAAAT--ATACAGAA-TTTGAA-------AAAAAAATGGCAG--AAAATTTGT-GATGTGTTGTG-TT-CAGAT-G-TACA-T-TG-------TA----TAACTGTTTCTGAGATT--TCAAAAAGAAATTTAT-TTTTGCTT-AC-TACC-TCCTAC--A-T--GACCAT-GTGC-CCC----
gi|17 : tttgc------TA-TA----------------------TAT---AGTA-AGC---A--------A-TATCCAAG-TAT---ATGTG---GTAT------A--ACAG--TATAT--ATG-ATA-T--AATT-TGAATATGTT-GATT--T-GTT-T-GAG-AAATGT--GAAGGTTGAAAT-AAA-----ATAGC-AATTAA-AAAAAAATAA
gi|18 : acaacatcacaatgtatgtatatatatataTC---TCTTCCATAT----AAAAATTA---------CA-TTCAATTATTGCATCAT------TA-TG----------------------T-T---TGTA-TAT---ATATGTAGCA-TATACAAG-TAT---ATGT-----TGT------A-CACCG--TATATACATGCATG-A--AATC-CAA-CAAGTTGGATT--T-TAT-G-GCA-AAAT-T--GTAAGCTG
gi|19 : tttttat-CAAAT-G-TACA-C-TG--------A----T-----TTTT-----TT--CCC------------T-TTT--CTT-AC-TACCT-CCTAC--A-T--GACCAT-GTGC-CCC----TAT-ATATCTGTCC-CTTT-CCT-TTTC-TCCCA------TTTACT---------------ATTTCTT-CTTATC-CCTCTGT--TC-TATCT--GGG-----
gi|2 : AATGGA--AAAA---AAA-C-AA--------C----CAG-------AAACA-GGACATT-TTCATGAGTTC-----GAATGGAAAAAACAAA-AATATTCTT---GAACCTTGTTTTCAAAGACACAC-GGAACTAAAggttt
gi|20 : cctacttccatcgtaaaacattacatgtataaaaatcaacgatactttgcaatgatttcaggatataaggttaaaattcagtgatttcagtcttagatgatggattttccaaagacaaaaatttgtcaaagttgttccatctacaaaaggtgttgactggaacaataaaaacctttgattttgctaggtatacgattccagcattgatttacaaggaaagtggtgataaagtataagatgaatgcaggaaatctaaaaaaaaaaaaaaaaaaaaaaaacaaagaagaagaaaaaaaaaaaaggttatgatgtagtggataagtcttttctcctctaggtagaccaacaataataaagaaaaccattgatttccaaatgaatcatttttaattacttacaattccaaactctagagagaaaaagcgtgaaactggtttttaacaaggattctagtaaaacttctttcgaactaaataaaactcgtaaaagaaaaaatagtcataatcattagaatatgcaaatggtataaaaaattactgtaaggaaatttctggcacagggatcagcttattctacatccagaaatacaaaaatgggacaaataccaggtgatagaaattaatactgtgtagataaacttggagaagggaaagattattcatgattggaggtgttaaaataatccaacagctttagatgaagtatttcagaaactggtcaaataaattctgtaaaagtgaaaatacaaccgagattttctttggatcttcatcattcagaatattacgtcggtggaaaatcagtattcttaaaaagcgtcaggtatgattcaggcagtgtaagttcatttataccttgaaaaatggtttggtacaagctcattatatacaaagatgatttgaaatccaaaatatttaaaaaggcatctgagataaagagaggcaatttcaaaaaagacaaatccttaacaagacaatgattagaagactggtaatgctacattgccatcactgctatcaatcataacatacaggtatttcaaaaacaaaaagatgtaaaattcataaaaattaaatagccaaaaattacatccatatcaaAAAT-G-TACA-C-TG--------A----T-----TTTT-----TTC-CC-------------T-TTT--CTT-AC-TACC-TCCTAG--AGT--GACCAT-GTG--CCC----TAT-ATATCTG-TC-GCTT-CCT-TTTC-TCCCA------TTTACT---------------ATTTCTT-CTTAT--CCTCTGT--TC-TATCT--GGG-----T-TTT--tagatagtggatgctacgtcacatgtactattccatgtaattactatcttacaataaactagaatctgtgatccttcagtctgcgacatgttgtaagagaacttggagaactttgatcaaatttttgtagaatgcccttgttgttgaaataaagaatgactttatgaaaaagactggatcaggcaatatcgcgtttgaaacaaactaat
gi|21 : -CAAAT-G-TACA-C-TG--------A----T-----TTTT-----TTC-CC-------------T-TTT--CTT-AC-TACCT--CTAG--AGT--GACTAT-GTG--CCC----TAT-ATATCTGT---CCTT-CCT-TTTC-TCCCA-TT-------------------TA-CATATTCTT-CTTAT--CCTCTGT--TC-TATCT--GGG-----G-TTT--
gi|24 : CTC---TCTTCTGTATT--AAAAAACAA---------CA-TTTA----------------------------------------------------TGTA-GGT---AT-----TCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TTCAG--TTTA--TATG-ATG-T--AATT-TGA-CATGT--GATT--T-
gi|25 : A----------TAT------TA-TA----------------------TAT------A-TGT---AA-----GCA-TATCCAAG-TAT---ATGTG---GTAT--------TACAG--TATAT--ATG-ATA-T--AATT-TGA-TATGT--GTAT--T-TGT-T-Agt
gi|26 : ctcacaatgtatgatatat---ATGTG---GT--------A-TACAG--TATAT--ATG-ATA-T--AATT-TCA-TATGT--GATT--T--GT-A-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATT
gi|27 : CCT-CTTATC-CCTCTGT--TC-TATCTGGGGG-----T-TTT--CCC-CCCTTCTTTTTA------CTCTTTTTCT------CTCTTTCTCTCTC---TCTatata
gi|28 : TAT-TATG-ATG-T--AATT-TGA-CATGT--GATT--T--GT-T-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-AAAAAAActc
gi|29 : AACTTTCAAA-GAAT---AGAAAATCAC--CA---------CTTCTGCA------GTAA-T-G-AAATT--GAA------T-CAA-TTGA
gi|3 : AATGGA--AAAA----AA-C-AA--------C----CAA------AAAACA-GGACATTTTTCAG-AGTTC-----GAATGG----AAA-AA-AATATTTTT---GAA-CTTGTTTTCAAAACAACACAGGAATCTAAA--TAATA-GTG-GA---TGCAG---------TCACAT--ACTATT-TCCATGTAATTAC-TATTTACATAAA--CTT--AG-AATT----GTTGATTCCTTCAG----------TCTGCACATTTTGTAA-GAG-AAACTTGGAA------A-CTA-TTGAT-CAAATTTTTGTA--GAAT-GC-CC----TT--GT--------GTGT-GG----AA--ATA-----AA-GAA---TGA-CTTTATG--AA-AAACT--GG-A-CAGGCATATCG-C-TTTGAT-A-AACAA-
gi|30 : ttttcctacttccatcgatgacattacatgtattaaaatcatacattactttgcaatgatttcaggtctaaggttaaaattcagtgatttcaggtctaatgatggatttttcaaagacaaaaattttcaaaggttttccatcatacaaggtggtttgactggaacaataaaacctttgatttgctaggtataagattcagcatttatttacaagaaatggtgggtatgaaatataagactaaatgcagggaaatctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggttatgatgtagtggataagtctttctcctctaggtagaccaacaataataaagaaaccattgattccaaaattgaatcatttataatacttacaattccaaactctaaagagaaaactaactgtttttaaaagggatctctataacgttctttcgaataataaaactcgtaaagaaaaatatcataatccaattagaatatgctaattatggtataaaaattactgtaaggaatttctggcaacatggattcaactattctacatccaaatacaaaatggacaaaattaccaggtgtagaattaattactggtgtagataaactgtggagaagtggaatagattttattcatgatttgattttaaaaatatcaacagcttttagatagaagtatttcagaactggtcaaagataaattctgtaaaagctggaaacaaccgagatttttcttttgtgcatatctttcatcattcaaatattactgtcggtggaaaatcagtatttcttaaaagcgttcagtatgattcaggcattgtattcatttatgaccttgatgaaaatggtaattggtacaagctcgattatatacaaaatgatttgaaatccaaaatgaattttaaaggcatatgaaggattaaagagagcaattcaaaaaagacaagttcttttacaagacaatgattataaggactgtaaagctacatttgcctaatccatctactatattcaatacatacatgtatttcaaaaacaaaaaagattgtaaattgataaaaattaaagtagccaaaattaaatccatatcaaa-TTT--CTT-AC-TACTTTC-TAC--A-T--GACAAT-TTGC-CCC----TAT-AAATCTGTTC-ataa
gi|31 : TG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AATTAA-AAAAAAA
gi|5 : ACTATGAGAA-TTT-TTTA-TATCAATACATAA-GGGATGT-AAGACATGTATA--CTATTCTTTATTAATAGA--GAAA--AAAA-CAAA---GTC-TT----CAAAATT--AAAATA-GGATATCATTCA--ACCTCTATAAGAAT-G----AAC-CA-AAT-TTTTG---AAA-CTTCCTTTTAAAGTCACACAAG-ATCAAAA--CTTCA-CTG-GT-----CAATTTCAAATTTTACATAGAATAGTCTCCAACAAACTCCATATCTATTTAAA--CTT--AA-GATTAAAAAACAATCCC--CAGCA-GTGAGCTTCTGCA------GTAA-T-G-AAATT--GAA------TCCAA-TTGAAGCATCTATTTGTT--GAAT-GT-C-----TTTAGT-AA-AGAAATTTGGG----AATGAATTT-G-AA-GAG----GG-CTTT-TA--TATAAATTTAGA-A-TATCC-TATC--C-TTTGAT-AGACAAA-C-AATA-T-ATTTTGGGA----AGTTTACAA-ACAAGAATGTTT-AT-AAGTA--CA--AAATCTATTGAC--TTTGATAA-TC-AGCATAT-ATTTAT-TTTTCAG-TAAATACAAA---GA--CCA---ACCCAAC-ACTAA--ATAACAAGGGT---TCTAAAAACAAT-------TAATTGT---GGAA-AGAATATCATGATTGG--AAAAAATTT-TTACTATT---AAC--AATGT--AT--ATACAGAATTTTG-----------AAAACTGGCAG--AAAATTTGT-GA-GTGTTGTGATT-CAAAT-G-TACA-C-TGA------TA----T-----TTTT-----TT--TT-------------TCTTT--CTT-ACTTAACTTCCTAC--A-T--GACCATGGTGC-CCC----TATAATATCTGTTC-CTTTCCCT-TTTC-TCCCATTT-ACTTTACTCTT-C---TCTA-CAATTTTCT-CTTATC-CCCCTGT--TCTTATCT--GGGT----T-TTT--ACCGCCCTTCTTTTAA------CTC----TCT------CTCTTTC-CTTTCCATCCTTCTGTA-TTATAAAAAC-A---------CATTTCA----------CAT------TG-TA----------------------TATA--TGTA-GGT---AT-----GCATTTTCCAAGTTATATAATGTG---GT-T------ATTACAG--TATAT-TATG-ATG-T--AATTATGA-CATGT--GA-T--T-TGT-T-ATGAAAATGT---AAGGTTGAAATAAAA----TATTGC-AAATAA-AAAAA
gi|6 : ACTATGAGAAATTT-TTTAATATCAATACA-AA-GGGATGTAAAGACAT-TATA--CTATTC-TTATTAATAGAT-AAAAGAAAAAAC-AAACAGTACTT----CAATATTTTAAAAT--GGATATCATTTC--ACCTCTAT-AGAATGG----AAC-AAGAAT-TTT-----GAA-TTCCTTTTTAAAGTCACACAAGAATCAAAAACTTTCA-CTG-GT---TACAATTTTCAATATTACATAGAATAGT-TCCAACAAACTTCATATCTATTTA---CTTA--AAAGATT---AAACAATCC----AGCT-GT-AGCTTC-GCA------GTAA-T-GTAAATT--GAA------T-CA--TTGAA-CATCTATTTGT---GAAT-GT-CA----TTTAGTAAA-AGAAATTT-GG----AATGATATT-GGAA-GAG---TGG-CTTT-TA--TATAA-TTTAGA-A-TATCCATATC--CCTTTGATTAGAACAA-C-AATA-T-TATTTGGGA----AGTTTACAATACAAGAAT-TTT-ATAAAGTA--CA--AAATCTATTGACTTTTTGA-AA-TCAAGCAT-T--TATAT-TTTCAAG-TAAATACAAA---GA--CCA-----CCAAC-ACTAA--AT-ACAAGGGT---TCTAAAAACAAT-------T-ATTGT---GG-A-AGA--ATCATGAT--G--GAAAAATTT-T-ACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAGAAA---TTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TAACTTTCTAC--A-T--GACCAT-GTGC-CCC----TAT-AAATCTGTTC-CTTT-CCT-TT-C-TCCCA-TT-ACTTTACTC-T-C---TCTA-CAATTTTCT-CTTATC-CCCCT-T--TC-TATCT--GGG-----T-TTT--ACC-CCCTTCTTTTAA------CTC-----CT------CTCTTTCTCTCTC---TCTTCTGTATTTAAAAAAACAA---------CA-TTCA----------CAT------TG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG--TGTT--AATT-TGA--AT-T--GATT--T-TGT-T-ATG-AAATGT--GGAAGGTGAAAT-AAA----TATTGCAAAATAATAAAAAAAAAA
gi|7 : ACTATGAGAA-TTT-TT-A-TATCA-TACA--A-GGGATGTAAAGACATGTATA--CTATTC-TTATTAATAGA--A---GAAAAA-C-AA---GTA-TT----CAATATT--AAAAT--GGA-ATCATTCA----CTCTAT-ATGATGG----AAC-AA-AAT-TTTTT---GAA-CTTCCTTTTAA-GTCACACAAGAATCAAAA--CTTCAACTG-AT---TACAAT--CAA---TTACATAGA-TAGT-TCCAACAA-CT-CATATCTAATTTAAACTTT--AA-GATT---AAACAATCCC--CAGCATGT-AGCTTCTGCA------GTAA-T-G-AAATT--GAA------T-CAAATTGAA-CATCTATTTGTT--GAAT-GT-CA----TTTAGTAAA-AGAAATTT-G-----AATGATATT-G-AAAGAG---TGG-CTTTATA--TATAAATTTAGA-AATA-CCATATC--C-TTTGAT-AGAACAA-CCAATA-T-TATT-GGGA----AGTTTACAA-ACAAGAATTGTT-ATAA-GTA--CA--AAATCTATTGACTTT--GATAA-TCAAGCAT-T-AT-TAT-TTTCAAG-TAAATACAAA---GA--CCA---A-CCAAC-ACTAA--AT-ACAAGGGT---TCTAAAAACAAT-------T-ATTGT---GG-A-AAG--ATCATGAT--G--GAAAAAATT-TTACTATT-TAAA---AATGT-AAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAG-AAAAATTTGT-GATGTGTTGTGATT-CAAAT-G-TACA-C-TG-------TA----T-----TTTT-----TT--TC---------------TTT--CTT-AC-TAC--TTCTAC--A-T--GACCAT--TGCGCCC----TA--AAATCTGTTC-CTTT-CCT-TTTCTTCCCATTT-ACTTTACTC-TCC---TCTA-CAATTTTCT-CTTATC-CC-CTTT--TC-TATCT--GGGT----T-TTT--ACC-CCCTTCTTTTAA------CTC----TCT------CTCTT--TCTCTC---TCTTCTGTA-TTAAAAAAACAA---------CA--TCA----------C-T------TACTT----------------------TAT---TATA-GTTACAAT-----TCG-TTT-CAAG-TAT---ATGTG---GTGT------A-TACAG--TATAT-TATG-ATG-T--AATT-TGA-CATGT--GA-T--T-TGT-A-TTG-AAATGT--G-AGGTTGAAAT-AAA----TA-TGC-AAATAA-AAAAAAAAAttg
gi|8 : ttgcttatggacattatacccagtATA-T-TATTTGGTA----AGTTTACAA-ACAAGAATGTTT-ATAAAGTA--CA--AAATCTATTGACTTT--GATAA-TCAAGTAT-T-ATATTT-TTTCAAG-TAAATACAAA---GA--CC----AACCAAC-ACTAA--AT-ACAAGGGT---TCTAAAAACAAT-------T-ATTGT---GGAA-AGA--ATCATGAT--G--GAAAAATTT-TTACTATT-AAAAC--AATGTAAAT--ATACAGAA-TTTG-A-------AAAAAACTGGCAG---AAATTTGT-GATGTCTTGTGATT-CAAAT-G-TACA-C-TG-------TATTTTT-----TTTT-----TT--TC-------------T-TTT--CTT-AC-TA-CTTTCTAC--A-T--GACCAT-GTGC-CCC----TAT-AAATCTGTTCTCTTT-CCT-TTTC-TCCCATTT-ACTTTACTC-T-C---TCTA-CAATTTCCT-CTTATC-CC-CTGA--TC-TATCT--GGG-----T-TTTTCTCC-CCCTTCTTTTTACTCTCTCTC----TCT------CTCTTTCTCTCTC---TCTTCTGTA-TTAAAAAAACAA---------CA-TTCA----------CATTGTATGTG-TA----------------------TAT---TGTA-GGT---AT-----GCA-TTTCCAAG-TAT---ATGTG---GTGT------A-TACAG--TATA--TATG-ATG-T--AATT-TAA-CATGT--GA-T--T-TGTAT-ATG-AAATGT--GAAGGTTGAAAT-AAA----TATTGC-AAATAA-GAAAAA
gi|9 : -CATCCATGTGTTTTGAGTAGT-GAAAACTTCACTGCA-AGAA--TT-GGTGCGAATGATATTTGCAA-GAGAGATGGTCTTT-TA--AATAAATTTAGATA-TATCCACATC--C-TTTGAT-AAAACAA-C-AATAATATATTTGGTATAACAGTTTG-GA-ACAAGAATGTTTCATAAAGTAGCCAGAAAATG-ATTGACTTT--GATAAGTCA-GCAT-TTATATTT-TTTCAAGATAAATACAAAAGCGAACCCA---TACCAACCACTAA--AA-ACAAGGGT---TCTAAAA-TAATGCGCGAAT-ACTATCTGGA-A-AGA--ATTATGAT--GTGGAATGGTTTATTACTATTTAAAACTCGATGTGAACTCATACAGAA-TTGG-AGAAAGGAAAAAAACTGGCAGAAAAAGTGTGTTGATGTGTTGTGATTGCAAAT-GATACAAC-TGCATAATATA----T-----TTTT-----TTCTTC-------------T-TTT--CTTTAC-TACTTTTCTACTTA-T--GACCAC-GTGC-CCC----TAT-AAATCTGTTC-CTTT-CCT-TTTC-TCCCATTT-ACTTTACTC-T-CTCGTCTACCAAATTCCT-CTTACC-CCTCTGT--TC-TATCT--G
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTCGAACTCATCTCTGGGATTTTTATATATTAAACGACTTGACTTTCAACTTCGGAACATCATAAACAACTGGATAAAAACTTTTTAATATGAATATAATATTGTGTCATTACAAATTGGATAAACTGCAGAAATATTTTCAACCCACAAAGAGGCCTGTAGCAAGGCGAATCCATAATCACCTCTCTTTTTTGCTCTGTGCAGAAGTCTCGGAATAATATAAAAATAATAAAGATAAAAAAGGAATAACAATTGAGGGGAGGAATATAAATTATGCCAGTATGGCGATGATAACTTCATTATTCTCAGATGGATGCACGCCGAATCCATGGTTGTTCATCCTTAGAGAGAGATTATTTGGCTATATGTTTCCGGTCTGTAGATAAAATTTCTCCAAAACTAAAATGGTATGGATTGGCAGTAAATAAAATTTCAAATGAAGGTTTCTATCTATTCCAGATGGAAACTTTGATGCGAAAAATCCAACATTATGATCTTTGGGGATTAAAATTCTCTGTAGACTTAATAGGAATGAATTGAATTGAACTCATAACTCCAAGACTACTTGAAGGTTAAGAACCTCAAAATCGATTGGAAATGTAAGAAAAGTGACCTCTATCGGAAGACTAGTTGTAAATAAAAACTTTAAATTAAATACCAAAGATGAACCATTTGATACTTTGCTGATATACAAATCCTGACCGCAGAATATATAATAATATTTGAAAGACAAGAAAAATTTTTAAGCTATTGATGGGGAAGTCAAATTCATAAAACTCAAAAGAATATACATATCATTCATGAATTAAATGGAGGATTAAAATTGAACAGACTTCCAGAATTTATTACAGCTTTAAAAATCAAGTGGTATAAGAATTCTTCAATCAATTCAATAATGATTACATTTAACTGAGGGCAGAGTTGACAACAAATTCAATAATTTATGGTTGGAGGGACTGACTACAATCCTTACATAGTAAAACAACCAATAAAAATTTTTGGAAAGAGGCTCGTTTTTCCAGCTGGATTCAA
Unaligned ( gi|12 ): CTCAATGGTGATGAATTGAGTTGACAAGTTGTTAATGACCTCAATTAAACCTCAAAAGTAAAACTACCGTATTGAGAAAGATTTATAACACTCATTATATCGATGGAAATTAAGAAAGCTGACCCTATCGGAAGGACTGAGTTGTAATGTAAACTACTTTGATTATACCAAGATGAACCCCATTATAGATTACTATTACCAATCTGACCCATGAACTTAGTGTATATTTACAAAAAAGAT
Unaligned ( gi|22 ): AAAGGAAGTGTTCTATCATACAAGGTGGAAATTTGAATGAAATAAAACCTTTGAATTACTCGGGATAAGATTCAACATTAATTTACAAGAAATGGTTGAAAT
Unaligned ( gi|23 ): ATTTCAAATGAAGTATTTCATCATTCCAGATGGAAACTTGACTGGAAAAATACAACATTTGATCTCTTGGGGATAAAATTCTCTGTAGACCTTAATGGAAT