lowQualScore : 3333333 111111 2 2 111111 111 1111 3 111 44444444444444 222 11 1111 111111 22222222 1111111 1 1111 222222 11 1111 1111111 55555 1 1 22 222222 11111111111 111 22222222 11 11 1111 111 111 1 111111 1111 1111 111 111 55555555
lowQualScore : 6 5 5555555 77 666666 5 4 5 5 5 2 0 3 2 3 888888 111 6 5 5555 6 6 1 222 6 2 5 22222222222222 3 111 6 55 5 77 88888 2 5 5555 5 5 999999 1 3 77 5 99 77 999 44444444 6 6 1 6 6 4444444 6 3 5 7777 9 5 5 5 222222 6 6 99 5 5 5 7 33 0000 55 5 5 5 8888888 5 33333 1 5 5 7 77 00 4 333333 5 5 9999 55 5 0 5 8 0 99999999999 77 5 88 99 6 9999 000 99999999 5 33 5 99 5 6666 5 5 000 222 0 5 77 5 5 9 99 6 5 5 5 77 666666 77 1 6 7777 1 6 1 5 5 5 2222 000 5 888 77 55555555 5 5 77 5 5 5 5 5 5555 5 777 5 77
lowQualScore : . . ....... .. ...... . . . . . . . . . . ...... ... . . .... . . . ... . . . .............. . ... . .. . .. ..... . . .... . . ...... . . .. . .. .. ... ........ . . . . . ....... . . . .... . . . . ...... . . .. . . . . .. .... .. . . . ....... . ..... . . . . .. .. . ...... . . .... .. . . . . . ........... .. . .. .. . .... ... ........ . .. . .. . .... . . ... ... . . .. . . . .. . . . . .. ...... .. . . .... . . . . . . .... ... . ... .. ........ . . .. . . . . . .... . ... . ..
lowQualScore : 7 7 7777777 99 444444 7 9 7 7 7 4 7 3 5 5 777777 777 7 2 0000 7 7 8 333 7 5 2 22222222222222 7 888 7 88 7 99 00000 3 7 3333 0 0 666666 4 0 99 7 77 99 111 22222222 7 7 0 7 7 7777777 7 3 7 9999 3 7 7 7 111111 7 7 22 7 7 7 9 66 7777 99 7 7 7 1111111 7 66666 4 7 7 1 99 77 3 666666 0 0 4444 00 7 7 7 6 7 66666666666 99 7 00 22 7 5555 000 11111111 7 66 7 33 7 8888 7 7 000 999 1 7 99 7 7 2 22 7 7 0 7 99 444444 99 7 7 7777 7 7 5 7 7 7 1111 000 7 666 99 00000000 7 7 99 7 7 7 7 7 9999 7 999 7 44
consensus : TTA-ATAT-AA------TAC--CATN-----TTCCCGATA-TTATTC-AAG-TT-ATA-CCTTGCTGCTT-CTAACAGAAAAAGTTCATC----T-TATA---GCAATAC-CCTTTT-GTACT-AT-AAAA-CCCG--TTAATTTG-TTTCAANGTT-AA--TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CT---TCACA-CTTGGCACG-ACCAGACCTCCGTACA--ATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCCCC-GA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATACGG-T-CTCACA-CTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CC-TCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCANCCTCGCACGTG-CCACGATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCC-GGG-TATATCCT--AAAAC-CCCTTGCA---C--TGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGCTN-----T----A--GT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCG-TT-AN--CCCGAAA-CA--TCG-AA--T-ATTTACACAATNNTCTTA-C-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--CA------A--CCTCCTGCTGGACA-A---TCTAAA-AAA-C-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACC-GGTTTACTATT--TATA-------GAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAA-CTAAAA-TAAAATCCAACTTCATCACA
Reference ( gi|6 ) : TTA-ATAT-A-------TAC--CATT-----TTCCCGATA-TTATTC-AAG-TT-ATAACCTTGCTGCTTTCTAACAGAAAAAGTTTATC----T-TATA---GCAATAC-CCTTTT-GTACT-AT-AAAAACCCG--TTAATTTG-TTTCAAGGTT-AA--TGT-TA--TCAATAA--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACA--ATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCCCCTGA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATACGG-T-CTCACA-CT-CC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CC-TCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACA-----GGGCC-GGG-T-TATCTT--AAAACTCCCTTGCA---C--TGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAGCGCTA-----T----A--GT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCG-TT-AT--CCCGAAA-CA--TCG-AA--T-ATTTACACAATATTCTTA-C-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTATG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--CA------A--CCTCCTGCTGGACA-A---TCTAAA-AAA-C-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACC-G-TTTACTATT--TAT--------GAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAAAC-CAAA-CTAAAA-TAAAATCCAACTTCATCACA
gi|2 : TTACATAT-AA------TAC--CATT-----TTCCCGATA-TTATTC-AAG-TT-ATACCCTTGCTGCTT-CTAACAGAAAAAGTTCATC----T-TATA---GCAAT-C-CCTTTT----CTCAT-AAAA--CCG--TTAATTTG-TTT-AAGTTA-AA--TGT--A--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTT-CTGACGCCA-CTCACTCACA-CTTGGCACG-ACCAGACCTCCGTACA---TG-ACACGC-------GA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCCC--GA-C-CCG-CAGGCCCTCT-CAC--TGCA-AACGATACGG-T-CTCACA-CT-CCCGACTTCTCACACAAATG-AAACA-CT------TGG-CCCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCA-CCTCGCACGTG-GCACAATACCAGATG---GATAT--CCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAA---GGCCC-GGG-T-TATCTT--AAAAC-CCCTTGCA---C--TGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATACCGCTA-----T----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TTAT-GCCA---AAACCG-TT-ATA-CCCGAAAACA--TCG-AA--T-ATTTACACAATATTCTTA-C-CGGC---TGGAGAAACA-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTT-TG--CT-ACCCATCTA-CCAGACTAAC--CTG-GAATTCGCCAAA--CA------A--CCTCCTGCTGGACA-A---TCTAAA-AAAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACC-GGTTTACTATT--TATA-------GAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAA--A-TATACATACACA-CCACAAAAC-CAAA-CTAAAA-TAAAATCCAACTTCATCACA
gi|4 : aataactggcaaatgcctaaacacgacaatcaaagtcaaagtgtatataataaccacatatttgccaaatgtttcggctttttccacacttttgaaatattgttctttttacttaataagTTA-ATAT-AA------TAC--CATA-----TTTCCGATA-TTATTT-AAG-TT-ATA-CCTTGCTGCTT-CTAACAGAAAAAGTTCATC----T-TATA---GCAATAC-ACTTTT-CTACT-AT-AAAA-CCCG--TTAATTTG-TTTCAAGGT---------------CAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACA--ATGTACACGCATACAGCGA--TGCC-GGA--AAA--CTCC--TCTTCCAGCCCCTGA-C-C-G-CAGGCC-TCT-CAC---GCA-AACGATACGGGT-CTCACA-CT-CCCGACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CC-TCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACA-----GGGCCCGGG-T-TATCTT--AAAACTCCCTTGCA---C--TGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTGTCCA-GATAACGCTA-----TTAATA--GT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCG-TTTAA--CCCGAAA-CA--TCG-AA--TTATTTACACAATATTCTTA-C-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--CA------A--CCTCCTGCTGGACA-A---TCTAAA-AAA-C-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACC-G-GTTaatacaag
gi|5 : agTTA-ATATGA-------TAC--CATA-----TTTCCGATA-TGATTT-AAG-TT-ATA-CCTAGCTGCTT-CTAACAGAAAAACTTCATC----T-GATA---GTAACAT-CCTTTC-GTACT-AT-AAAA-CCCG--TTAATTTG-CTTCAATGTTAAA--TG--TA--TCAATAT--AAT-ACAC--AGAATGAAAG-TTTGGT--TACTCAA--C--AGTTCACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACA--ATGTACACTCATACAACAA--TGCC-GGAC-AAA--CTCC--GCTTCCAGCCACAGA-CTC-G-CAAGCC-TCT-CAC--TGTA-AACGATACGG-T-CTCACA-ATGCC-GACGTCTCAC-CAAATG-AAACA-CT-G----TGG-CC-TCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCACCCTCGCACGTG-CCACAATACCAAATC---AGTAT-TCCCCCGTCG-GA-CACC-TTCCTG--A-C--GCTGGGAGTATTC-CACAAT---GGTCC-GGG-TATATCCT--AAAAAACCCTTGCA---C--TAAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGCTA-----T----A--GT-ACAAG-TACAAAT--ATGTAAAAC-TATT-GCAA---AAAACGTTT-AA--CCCGAAA-CA--CCGAAA--T-ATnaatctcctgctggacaatctaaaaaacgtggccgtataaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|3 : cctactgtattgaagttcttttaaggattgtgtgaggaagcagaggaaaaagataaaacacaaaataaacaatcaaaatgtatttatataataagacaagtttggaaaaaaaccaaacaacaaagtatttacactcactcacttccagggcaaatagcatacaaaattaagtatcagttattgactaatgcttcaaaaaatactttcttgcagaaatataatacagttgtcaatcgcaggcaatgctaacaccacaatctaagtcaaagtgttaatatcatacactactgccggatagtttcggttttcagcttgaaaatattgcTTA-ATTA-A-------TAC--CATTAATTACTCACCATAATTAATT-AAG-TTGATA-CCTTGCTGCTTCATAACAGAAAAAGTTCATC----C-TCTAATCGCAATACACTTTTT-ATACT-AT-AAAA-CCCGGTTTAATTTG-TT-AAAAGTT-AAA-TGTATA--T-AATATTTAATGACACC-AAATTGAAAGCTTTGGTGTTAGTCAATCC--AGTTCGCTGACGCCATCA---TCACATCTTGCAACGTACCAGACCTCCGTACA-----------TAT-CAGCGA--TGCCCGGAC-AAA--CTCC--TCTTCCAGCCCC-GACC-C-GCCAGGCC-TCTCCAC--TGT--AACGATACGG-TCCTCACA-CT-GC-GAAGTCCCAC-AAAATGAAAACATCTGG----TGGCCC-TCCTAACCGCGGCGAAACGCCGA-CT-TTCTGTCATCCCTGCACGTGTCCACAATACCAGATGGGAAGTATCTCAGCCGTCGAGATCACCTTTTCTG--ATC--GCCGG--ATATTCTCACAATCACGGCCC-GGGTT-TATCTTAAAAAACCCCTTGGCAAT-C--TGATAT-AGACAATTGACCTATCCTAAAATCCTGTCCACGATACAGCTATTAATT----A--GTAACAAGTTACAAAA--ATGTCAAACTTAAT-G-CA---AAACCG-GT-ATAACCCGAAA-GAC-TCG-AATGT-ATTTA
gi|1 : actgtaatgaagttcttttaaggattttgtgaggaagcagagaaaaagatgaaacgcagaataaacaatcaaaaatttatataataagataagtttgaaaaaacccaaacaacaaagtatttacactcagatttaactcactcactccacgcctagggcaactagcatacaaaataaagtatcagttattactaaatcaagaagtaactttctgcagaaattataacgcaacagtgcaataactggcaatgctaaacacacaatcaaagtcaaaagtgtatgatataacacatattgccaaatcgtttcggcttttccaactttgaaatattgttttttacttaataatgtTTA-ATAT-ACTAGTACTAC--CATA-----TTTTTGTTA-T-ATTC-AAAATT-ATAAA-TTGCTGCTTCC-AACAGAAAAG--TTATCACTGTACATA---GCAATAA-C-TTCT-GCGCT-ATTAAAGAC-------AATACGATTTCAGTGCC-AAACTGT-TAGTTTAATGA--A----TAG--AAATTGGAAG-TTTGAT--TACTCAA--C--AGTTCACTGACGCCA-AT---TCACA-CTTGGCACG-ATTAAACC-CCATAAA--A--TACACGTATACA-CGACTTG---GAAT-AAAAGTTCC--GCTTCCAGCCACAGA-CTC-G-CA-GTC-TTT-CACTTTGC--AACGATTCGG-TACGGATA-CCGCCGGACTTC-AAC-TAACTG-TAAAA-TT----------------------CGG-GAAACACCCATTT-CTATCTCAGACTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCC-AGC-TATATCCT--AAAA--CCCTT-CA---CGAGGAAGTAA-ACAA-------AT------A-CCAATACA-CATAACGATT-----T----A--GT-AT-AG-CACAAAA--ATGTC-AAC-T-----CCA---AGAAAGTTT-AA--CCCGAAA-CACCTCA-AA--T-ATTAACAAAA-----TTAGC-CGGC---TGGAGAAA-----------CAT----------AT-T----GG-CTCCCTG-GTT-ACCCATCTA-CCAGACTAACTGCTG-GATTTAAAAAAA--AAAAAAGCA--CTTCCTGCTAGACA-A----CT-GG-ACA-C-GTGGCCTCA-CGCTTGACGAACAAACGGCCACTGC------A---A-TGG---------G-TTTCCTAAA--AATA-------GACCT-A-CTGG--CCAAC-ACTCATATA-ACG-G-AACCCA---ACTAACATACAGCCAAG------------ACA-ACACAAA---CAGATCTAAAA-
gi|7 : gcgaaataacaaaacaaaatttattataataagagaagtataaaaacaaactatttcacacactcacccactctcaccaaggaaaagtaacatacatgtactttgaacacaatatcaaataacaagcaaaaattatcaactatgaattaatattaaaaaaaacttttcttgcagcgatgtaattcaatagcgataaagaacaacgttatttctataaccaaaagtaaagttccaatataacaaactcttaccgaaaatttaatgtttccactagaaaatattacTTA-ATAT-AA------TACAATATT-----TTCATTATA-TGATTTTAAG-TT-ATA-CATTGCTGCTT-CTAACAGAAAATGTTCACA----A-TGTA---GCAATAC-CATTTTCGT--T-AT-TAAA-CCCG-----ATTT---TTCTGTGCTGAA--TGC--A--TTAATAT--AAT-ACACACAAATTGAAAG-TTTGGT--TACTCAA--T--AGTTCACTGACGCCA-CT---TCGCA-CTTGGCACG-TCTAGACCTCCGTACA--ATGCACATGTATACAGCGA--TGCC-GGATAAAA--CTCC--GCTTC
gi|20 : ttcacacatactcattctcaccaagggcaactagcatacataataatgtatcaaaattgttgacaatgaattgaagaaataactttcttgcagcgatattttccagtagtcaatataacaggcaatgctaacaccacaatcaaagtcagggtgtcaacatatcacaatattgcccaatacatgtagtttcggttttcaacttgaaaacattac-A-------TAC--CATT-----TTCCCGATA-TTATTC-AAG-TT-AT-ACCTTGCTGC-TTCTAACAGAAAA
gi|18 : AAG-CTTGGC--TACTCAA--CGCAGTTTGTGAACACCA-CT---ACACA-CTTGACACA-ACCTGGCCTCCATACAACACGTAC
gi|14 : ---TCAC--CTTGGCACG-GCTAGACCTCCATACA--A--TACATATATATAGTGA--CGTC-AGAT-AAA--ACCCGGTCT---------------C-A-CAGGTC-TCT-AAC--AGTACAACAATACAG-T-CTCACATCG-CC-GACTGC-AAC-CAAATG-TACAA-TT-G----TGg
gi|19 : CA-CTGCC-GACTTCCCAC-CAAATG-AAACA-CT-GCATGTGG-CA-TCT--ACCCCGG-GAAACGTCCA-TT-CTCTGTCACCCT
gi|11 : GG-GAAACACCCA-TTTCTATCTCAGCCTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCC-AGC-TATATCCT--AAAA--CCCTT-CA---CGAGGAAGT-A-ACAA-------AT------A-CCAATACA-CATAACGATT-----T----A--GT-ATACG-CACAAA
gi|8 : CACGTG-CCACAATACCAGATG---AGTAT-CCCCCCGTCG-GA-CACC-TTTCTA--A-C--GCTGGGAGTATTC-CACAAT---GGCCC-GGG-T-TATCCT--AAAACCCCCTTGCACGGC--TGGAAC-A-A
gi|12 : AAT-A-ACAAATG-CTTGTCATAGAA-CCTATACA-AATAACGATT-----T----A--GT-ACACG---CAAAACTATGTAAAAC-TCTTCACCATACAAATTG----AA--CCCAAAA-CA--CCG-AAA-T-ATTTACATAATTAGCTTA-C-CGGC---TGGAGAAA-A-GCAAAGTCCACACA-GCA--AAT-TATAAGG-CTTatccactgctcacgcagtaaattaaaaggctccctggctacccatctaccagactaactactgaaattcgccaaacaacttcctgctggacaatctaaaacacgcggccacatcccttgacaaacggccgctgctctgataactgaccaaaccggtttactatttatagaagttagaactactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacgccacaaaaccaaactaagataaaatccaacttcatcaca
gi|15 : TT-GCCA---AAACCG-TTTAT--CCGGAAA-CA--TCG-AAA-T-ATTTACACAATTACCTTA-C-CGAC---TGGAGAAA-A-CCAATGCCCACACA-ATA--AAT-TAAAAGG-------------------CTA-ACAGACTAA-TGCTG-GAATTCGTCAAA--CA------A--CC
gi|8 : CTTG-CACGGC---TGGAACAA-ATCCACTGCTCACGCA-GTA--AAT-TAAAAGG-CTCCCTG-GCT-ACCCATCTA-CCAGACTAACTACTG-AAATTCGCCAAA--CA------A--CTTCCTGCTGGACA-A---TCTAAA-ACA-C-GCGGCCACATCCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACC-GGTTTACTATT--TATAGAAGTTAGAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAA-CTAAGA-TAAAATCCAACTTCATCACA
gi|9 : cacgtgccacaataccagatgagtatccccccgtcggacacctttctaacgctgggagtattccacaatggcccgggttatcctaaaaccccTTA-C-CGGCATCTGGAAAAA-C-TCAATGCAGACACACGTATTAATGTAAAAGGGCTTTCTGAGCTGACCCACTTAACCAGACTAAC--CTGTGAATTCGCCAAA--AA------AATCTCCCTGCTGAGCA-AAATCCTAAA-AGA-GAGAGGCCGCA-CCCT-G----A-AAACGGCCGCTGCTTGGATATACACTGACACAAACC-GGTTTACTATTAGTATA-------GAACTGA-CTAGGCCCAACCACTCACACTCACGCGCAACCTGTGTACGGGCATA-AACCAATTATTATACATACACGCCCACAAAACACAAA-CTAAAATTAAAAT
gi|10 : tatctctTA-CCAG--CAACTGCTG-GAAATCTTCAAAAACA------A--CT--CTGCTGAACAGA---ACTGAAGAAA-C-GTGATCGCA-TGCTTG----ACAAACA-CAGCTACTCTGATA---ATTGAT-CAAACCTG-TTTAGTATA--TATA-------GATCT-A-CTGA--TCAAC-ACTCACACT-ACG-GCAACTTGT-TATGGGGATA-AACCAACTA-TATACAGCCAAA-CCACAAAAC-TAAT-CTAAAA-CAAAATTCTATTTAATCACA
gi|13 : aaagtaagaacgttttcacggactg-C-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGTTCTGATA---ACTGAC-CAAACCAG-TTTACTTTT--TATA-------GAACT-A-CTGG--CAAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAA-CTAAGA-TAAAAT
gi|4 : ATT--TATA-------GAACT-AACTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAA---CAAA-CTAATA--AAAATCCAACTTCATCACA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): CGCTGTAATGAAGTTCTTTTTAGGATTTTGTGTAGGAAGCAGAGAAAAAGATAAATCGCAGAATAAACAATCAAAATTTACATTAATATCAAAACAAATTTGA
Unaligned ( gi|17 ): CCGCAGAATAAACAGAAACAAAATTTATTTTAATAGTACGAAAAACTATTATTTGCACACACTCACTCTCACCAAGAAAAACTAACA
Unaligned ( gi|21 ): TCAATAGTCAATAAAAGGCAATGTTAACACCACAATCAACATTAACGTGTCA
Alignments
lowQualScore : 1111111 111111 111 111 22222222222222 11 1111 1111 2222 1 11 1 111111 1 11 11 1111 1 11 1 111 222222 111 11 22 111 1111111111111111 1111 1111 1111111
lowQualScore : 5 4444444 333333 66 5 3 5 5 5 5 5 5 5 1 77 0 000 000 5 3 8888 5 5 0 999 5 0 1 77777777777777 1 999 5 33 5 66 66 66 6 5 1111 4 4 9999 0 1 66 5 77 66 66 4444 5 1 5 5 5 5 999 00 5 1 2 5 7 5 5 5 888888 1 77 5 5 5 5 5 2 888 88 5 5 5 33 5 33 5 2222 8 11 5 0 5 555 4 4 6 5 2 5 5 66 444444 5 55 77 5 55 5 888 5 777 5 66 5 11 5 11 777 5 888 000 5 66 5 5 1 5 5 5 3 5 8888888888888888 66 5 1111 5 5 4 4 0000 888 5 1 66 6666666 5 5 66 5 5 5 5 5 22 5 0 99 5 55
lowQualScore : . ....... ...... .. . . . . . . . . . . .. . ... ... . . .... . . . ... . . . .............. . ... . .. . .. .. .. . . .... . . .... . . .. . .. .. .. .... . . . . . . ... .. . . . . . . . . ...... . .. . . . . . . ... .. . . . .. . .. . .... . .. . . . ... . . . . . . . .. ...... . .. .. . .. . ... . ... . .. . .. . .. ... . ... ... . .. . . . . . . . . ................ .. . .... . . . . .... ... . . .. ....... . . .. . . . . . .. . . .. . ..
lowQualScore : 7 6666666 555555 99 0 1 0 0 0 0 0 0 0 7 99 1 000 000 7 0 9999 7 7 7 666 7 7 0 77777777777777 7 666 7 66 0 99 99 99 2 0 0000 4 4 1111 1 4 99 0 22 99 99 3333 7 4 7 7 7 7 666 77 7 4 5 0 0 0 0 0 111111 4 99 0 0 0 9 0 0 888 11 0 0 0 88 0 88 0 1111 8 99 0 0 0 666 4 4 5 0 5 0 0 99 111111 0 99 99 7 66 0 888 0 111 0 00 0 99 0 99 888 0 888 111 0 99 0 0 4 7 7 0 2 0 2222222222222222 11 0 0000 0 0 4 4 6666 888 0 4 99 2222222 0 0 99 0 0 0 0 0 66 0 1 22 0 11
consensus : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTT-AAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGT-TATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACC-GTT-T-A-ACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
Reference ( family-2748 ) : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTT-AA--TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CT---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCANCCTCGCACGTG-CCACGATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGTATATCCT--AAAA-C-CCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACC-G-T-T-A-NCCCG-AAACA--TCG-AA--TATTTACACAATNNTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|1 : TTA-ATATACTAGTACTACCATA-----TTTTTG--TTA-T-ATTC-AAAATT-ATA-AA-TTGCTGCTT-C-CAACAGAAAA-GTTATCA-CTGTACATA---GCAATAA-C-TTCT-GCGCT-ATTAAA----G--ACAATACGATTTCAGTGCC-AAACTGT-TAGTTTAATG---AAT-AGA----AATTGGAAG-TTTGAT--TACTCAA--C--AGTTCACTGACGCCA-AT---TCACA-CTTGGCACG-ATTAAACC-CCATAAAA--TACACGTATACA-CGACTTG---GAAT-AAAAGTTCC--GCTTCCAGCCACA-GA-CTC-G-CA-GTC-TTT-CACTTTGC--AACGATTC-GGTACGGATACCGCCGGACTTC-AAC-TAACTG-TAAAA-TT---------------------CGG-GAAACACCCATTT-CTATCTCAGACTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGCTATATCCT--AAAA-C-CCTTC-ACG---AGGAAGTAA-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-AT-AG-CACAAAA--ATGTC-AAC-T-----CCA---AGAAA-GTT-T-A-ACCCG-AAACACCTCA-AA--TATTAACAAAATTA----GC-CGGC---TGGAGAAA-----------CAT----------AT-T----GG-CTCCCTG-GTT-ACCCATCTA-CCAGACTAACTGCTG-GATTTAAAAAAA--A------AAAAAGCA--CTTCCTGCTAGACA-A----CT--GG-ACAC-GTGGCCTCA-CGCTTGACGAACAAACGGCCACTGC-------------------AATGGGTTTCCTAAA--AATAGA-------CCT-A-CTGG--CCAAC-ACTCATATA-ACG-G-AACCCA---ACTAACATACAGCCAAG------ACA-ACAC-------AAAC-AGATCTAAAA-
gi|10 : gcgaaataacaaaacaaaatttattataataagagaagtataaaaacaaactatttcacacactcacccactctcaccaaggaaaagtaacatacatgtactttgaacacaatatcaaataacaagcaaaaattatcaactatgaattaatattaaaaaaaacttttcttgcagcgatgtaattcaatagcgataaagaacaacgttatttctataaccaaaagtaaagttccaatataacaaactcttaccgaaaatttaatgtttccactagaaaatattacTA-CCAG--CAACTGCTG-GAAATCTTCAAAAAC------A------A--CT--CTGCTGAACAGA---ACT-GAAGAAAC-GTGATCGCA-TGCTTG----ACAAACA-CAGCTACTCTGATA---ATTGAT-CAAACCTGTTTAGTATA--TATAGA-------TCT-A-CTGA--TCAAC-ACTCACACT-ACG-GCAACTTGT-TATGGGGATA-AACCAACTA-TATACAGCCAAA-CCACAAAAC-TAATCTAAAA-CAAAATTCTATTTAATCACA
gi|11 : aaagtaagaacgttttcacggactgGG-GAAACACCCA-TTTCTATCTCAGCCTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGCTATATCCT--AAAA-C-CCTTC-ACG---AGGAAGT-A-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-ATACG-CACAAA
gi|12 : AAT-A-ACAAATG-CTTGTCATAGAA-CCTATACA-AATAACGA--T-----TTAGT-ACACG---CAAAACTATGTAAAAC-TCTTCACCATACAAATT-G-----A-ACCCA-AAACA--CCG-AAA-TATTTACATAATTAGCTTAC-CGGC---TGGAGAAA-A-GCAAAGTCCACACA-GCA--AAT-TATAAGG-CTT
gi|13 : C-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGTTCTGATA---ACTGAC-CAAACCAGTTTACTTTT--TATAGA-------ACT-A-CTGG--CAAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAAT
gi|14 : ---TCAC--CTTGGCACG-GCTAGACCTCCATACAAT--ACATATATATAGTGA--CGTC-AGAT-AAA--ACCCGGTCT----------------C-A-CAGGTC-TCT-AAC--AGTACAACAATAC-AGT-CTCACATCGCC-GACTGC-AAC-CAAATG-TACAA-TT-G----TG
gi|15 : TT-GCCA---AAACC-G-T-TTA-TCCGG-AAACA--TCG-AAA-TATTTACACAATTACCTTAC-CGAC---TGGAGAAA-A-CCAATGCCCACACA-ATA--AAT-TAAAAGG-------------------CTA-ACAGACTAA-TGCTG-GAATTCGTCAAA--C------A------A--CC
gi|18 : AAG-CTTGGC--TACTCAA--CGCAGTTTGTGAACACCA-CT---ACACA-CTTGACACA-ACCTGGCCTCCATACA----ACACGTA
gi|19 : CACTGCC-GACTTCCCAC-CAAATG-AAACA-CT-GCATGTGG-CATCT--ACCCCGG-GAAACGTCCA-TT-CTCTGTCACCCTcg
gi|2 : TTACATATA-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CCCTTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAAT-C-CCTTTT----CTCATAAAA-CC-G--TTAATTTG-TTT--AAGTT-AAA-TGT--A--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTT-CTGACGCCA-CTCACTCACA-CTTGGCACG-ACCAGACCTCCGTACA-TG-ACACGC-------GA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-C--GA-C-CCG-CAGGCCCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTCCC-GACTTCTCACACAAATG-AAACA-CT------TGGCCCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCA-CCTCGCACGTG-GCACAATACCAGATG---GATA--TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAA---GGCCCGGGT-TATCTT--AAAA-C-CCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATACCGCTAT-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TTAT-GCCA---AAACC-G-T-T-ATACCCGAAAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAACA-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTT---GCT-ACCCATCTA-CCAGACTAAC--CTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCTAAAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAA--A-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|20 : aataactggcaaatgcctaaacacgacaatcaaagtcaaagtgtatataataaccacatatttgccaaatgtttcggctttttccacacttttgaaatattgttctttttacttaataag-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAaatacaag
gi|3 : TTA-AT-TA-----A-TACCATTAATTACTCACC--ATAATTAATT-AAG-TTGATA-CC-TTGCTGCTT-CATAACAGAAAAAGTT--CATCC---TCTAATCGCAATACACTTTTT-ATACT-ATAAAA-CCCGGTTTAATTTG-TT-AAAAGTT-AAA-TGTATA--T-AATATTTAATGACACC-AAATTGAAAGCTTTGGTGTTAGTCAATCC--AGTTCGCTGACGCCATCA---TCACATCTTGCAACGTACCAGACCTCCGTACA---------TAT-CAGCGA--TGCCCGGAC-AAA--CTCC--TCTTCCAGCC-CC-GACC-C-GCCAGGCC-TCTCCAC--TGT--AACGATAC-GGTCCTCACACTG-C-GAAGTCCCAC-AAAATGAAAACATCTGG----TGGCCCTCCTAACCGCGGCGAAACGCCGA-CT-TTCTGTCATCCCTGCACGTGTCCACAATACCAGATGGGAAGTATCTCAGCCGTCGAGATCACCTTTTCTG--ATC--GCCGG--ATATTCTCACAATCACGGCCCGGGTTTATCTTAAAAAA-C-CCCTTGGCAAT-CTGATAT-AGACAATTGACCTATCCTAAAATCCTGTCCACGATACAGC--TATTAATTAGTAACAAGTTACAAAA--ATGTCAAACTTAAT-G-CA---AAACCGG-TAT-A-ACCCG-AAAGAC-TCG-AATGTATTTA
gi|4 : actgtaatgaagttcttttaaggattttgtgaggaagcagagaaaaagatgaaacgcagaataaacaatcaaaaatttatataataagataagtttgaaaaaacccaaacaacaaagtatttacactcagatttaactcactcactccacgcctagggcaactagcatacaaaataaagtatcagttattactaaatcaagaagtaactttctgcagaaattataacgcaacagtgcaataactggcaatgctaaacacacaatcaaagtcaaaagtgtatgatataacacatattgccaaatcgtttcggcttttccaactttgaaatattgttttttacttaataatgtTTA-ATATA-----A-TACCATA-----TTTCCG--ATA-TTATTT-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-ACTTTT-CTACT-ATAAAA-CCCG--TTAATTTG-TTTCAAGGT---------------CAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGA--AAA--CTCC--TCTTCCAGCC-CCTGA-C-C-G-CAGGCC-TCT-CAC---GCA-AACGATACGGGT-CTCACACTCCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAG----GGCCCGGGT-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTGTCCA-GATAACGC--TATTA-ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACC-GTT-T-A-ACCCG-AAACA--TCG-AAT-TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTNA
gi|4 : agCCAAA--CCGGTTNA------A--TCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGTA-atctcctgctggacaatctaaaaaacgtggccgtataaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|4 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaATT--TATAGA-------ACT-AACTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAA---CAAACTAATA--AAAATCCAACTTCATCACAtaaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|5 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaccaaaccggttnaatctcctgctggacaatctaaaaaacgtggccgtataaTTA-ATATG-----A-TACCATA-----TTTCCG--ATA-TGATTT-AAG-TT-ATA-CC-TAGCTGCTT-C-TAACAGAAAAACTT--CATCT---GATA---GTAACAT-CCTTTC-GTACT-ATAAAA-CCCG--TTAATTTG-CTTCAATGTTAAA--TG--TA--TCAATAT--AAT-ACAC--AGAATGAAAG-TTTGGT--TACTCAA--C--AGTTCACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACTCATACAACAA--TGCC-GGAC-AAA--CTCC--GCTTCCAGCCACA-GA-CTC-G-CAAGCC-TCT-CAC--TGTA-AACGATAC-GGT-CTCACAATGCC-GACGTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCACCCTCGCACGTG-CCACAATACCAAATC---AGTAT-TCCCCCGTCG-GA-CACC-TTCCTG--A-C--GCTGGGAGTATTC-CACAAT---GGTCCGGGTATATCCTA-AAAA-A-CCCTT-GCA---CTAAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----ATAGT-ACAAG-TACAAAT--ATGTAAAAC-TATT-GCAA---AAAAC-GTT-T-A-ACCCG-AAACA--CCGAAA--TAT
gi|6 : cctactgtattgaagttcttttaaggattgtgtgaggaagcagaggaaaaagataaaacacaaaataaacaatcaaaatgtatttatataataagacaagtttggaaaaaaaccaaacaacaaagtatttacactcactcacttccagggcaaatagcatacaaaattaagtatcagttattgactaatgcttcaaaaaatactttcttgcagaaatataatacagttgtcaatcgcaggcaatgctaacaccacaatctaagtcaaagtgttaatatcatacactactgccggatagtttcggttttcagcttgaaaatattgcTTA-ATATA-------TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATAACC-TTGCTGCTTTC-TAACAGAAAAAGTT--TATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAAACCCG--TTAATTTG-TTTCAAGGTT-AA--TGT-TA--TCAATAA--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CCTGA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACT-CC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACA-----GGGCCGGGT-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAGCGC--T-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACC-G-T-T-A-TCCCG-AAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTATG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACC-GTTTACTATT--TAT-GA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|7 : TTA-ATATA-----A-TACAATA-----TTTTCATTATA-TGATTTTAAG-TT-ATA-CA-TTGCTGCTT-C-TAACAGAAAATGTT--CACAA---TGTA---GCAATAC-CATTTTCGT--T-ATTAAA-CCCG-----ATTT---TTCTGTGCTGAA--TGC--A--TTAATAT--AAT-ACACACAAATTGAAAG-TTTGGT--TACTCAA--T--AGTTCACTGACGCCA-CT---TCGCA-CTTGGCACG-TCTAGACCTCCGTACAATGCACATGTATACAGCGA--TGCC-GGATAAAA--CTCC--GCTTC
gi|8 : ttcacacatactcattctcaccaagggcaactagcatacataataatgtatcaaaattgttgacaatgaattgaagaaataactttcttgcagcgatattttccagtagtcaatataacaggcaatgctaacaccacaatcaaagtcagggtgtcaacatatcacaatattgcccaatacatgtagtttcggttttcaacttgaaaacattacCACGTG-CCACAATACCAGATG---AGTAT-CCCCCCGTCG-GA-CACC-TTTCTA--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGT-TATCCT--AAAACC-CCCTT-GCACGGCTGGAAC-A-A
gi|8 : AACCCCCTTGCACGGC---TGGAACAA-ATCCACTGCTCACGCA-GTA--AAT-TAAAAGG-CTCCCTG-GCT-ACCCATCTA-CCAGACTAACTACTG-AAATTCGCCAAA--C------A------A--CTTCCTGCTGGACA-A---TCT-AAA-ACAC-GCGGCCACATCCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGAAGTTAGAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAATCCAACTTCATCACAatccactgctcacgcagtaaattaaaaggctccctggctacccatctaccagactaactactgaaattcgccaaacaacttcctgctggacaatctaaaacacgcggccacatcccttgacaaacggccgctgctctgataactgaccaaaccggtttactatttatagaagttagaactactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacgccacaaaaccaaactaagataaaatccaacttcatcaca
gi|9 : cacgtgccacaataccagatgagtatccccccgtcggacacctttctaacgctgggagtattccacaatggcccgggttatcctaaATCTCTTTAC-CGGCATCTGGAAAAA-C-TCAATGCAGACACACGTATTAATGTAAAAGGGCTTTCTGAGCTGACCCACTTAACCAGACTAAC--CTGTGAATTCGCCAAA--A------A------AATCTCCCTGCTGAGCA-AAATCCT-AAA-AGAGAGAGGCCGCA-CCCT-G----A-AAACGGCCGCTGCTTGGATATACACTGACACAAACCGGTTTACTATTAGTATAGA-------ACTGA-CTAGGCCCAACCACTCACACTCACGCGCAACCTGTGTACGGGCATA-AACCAATTATTATACATACACGCCCACAAAACACAAACTAAAATTAAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCTGTAATGAAGTTCTTTTTAGGATTTTGTGTAGGAAGCAGAGAAAAAGATAAATCGCAGAATAAACAATCAAAATTTACATTAATATCAAAACAAATTTGA
Unaligned ( gi|17 ): CCGCAGAATAAACAGAAACAAAATTTATTTTAATAGTACGAAAAACTATTATTTGCACACACTCACTCTCACCAAGAAAAACTAACA
Unaligned ( gi|21 ): TCAATAGTCAATAAAAGGCAATGTTAACACCACAATCAACATTAACGTGTCA
Alignments
lowQualScore : 1111111 111111 111 111 22222 11 1111 2222 1 11 1 111111 1 11 11 1111 1 11 1 111 222222 11 22 111 1111111111111111 1111 1111 1111111
lowQualScore : 5 4444444 333333 66 5 3 5 5 5 5 5 5 5 1 77 0 000 000 5 3 8888 5 5 0 999 5 0 1 0 77 33333 1 999 5 33 5 66 66 66 6 5 8888 4 4 9999 0 1 66 5 77 66 66 4444 5 1 5 5 5 5 999 00 5 1 2 5 7 5 5 5 888888 1 77 5 5 5 5 5 888 88 5 5 5 33 5 33 5 2222 5 5 11 5 0 77 555 4 4 6 5 2 5 5 66 444444 5 55 77 5 55 5 888 2 88 5 11 5 11 777 5 888 000 5 66 5 5 1 5 5 5 3 5 8888888888888888 66 5 1111 5 5 4 4 0000 888 5 1 66 6666666 5 5 66 5 5 5 5 5 22 5 0 99 5 55
lowQualScore : . ....... ...... .. . . . . . . . . . . .. . ... ... . . .... . . . ... . . . . .. ..... . ... . .. . .. .. .. . . .... . . .... . . .. . .. .. .. .... . . . . . . ... .. . . . . . . . . ...... . .. . . . . . ... .. . . . .. . .. . .... . . .. . . .. ... . . . . . . . .. ...... . .. .. . .. . ... . .. . .. . .. ... . ... ... . .. . . . . . . . . ................ .. . .... . . . . .... ... . . .. ....... . . .. . . . . . .. . . .. . ..
lowQualScore : 7 6666666 555555 99 0 1 0 0 0 0 0 0 0 7 99 1 000 000 7 0 9999 7 7 7 666 7 7 0 1 11 44444 7 666 7 66 0 99 99 99 2 0 8888 4 4 1111 1 4 99 0 22 99 99 3333 7 4 7 7 7 7 666 77 7 4 5 0 0 0 0 0 111111 4 99 0 0 0 6 0 888 11 0 0 0 88 0 88 0 1111 0 0 99 0 0 00 666 4 4 5 0 5 0 0 99 111111 0 99 99 7 66 0 888 5 44 0 99 0 99 444 0 888 111 0 99 0 0 4 7 7 0 2 0 2222222222222222 11 0 0000 0 0 4 4 6666 888 0 4 99 2222222 0 0 99 0 0 0 0 0 66 0 1 22 0 11
consensus : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-TATATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
Reference ( family-2748 ) : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-T-TATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|1 : TTA-ATATACTAGTACTACCATA-----TTTTTG--TTA-T-ATTC-AAAATT-ATA-AA-TTGCTGCTT-C-CAACAGAAAA-GTTATCA-CTGTACATA---GCAATAA-C-TTCT-GCGCT-ATTAAA----G--ACAATACGATTTCAGTGCCAAACTGT-TAGTTTAATG---AAT-AGA----AATTGGAAG-TTTGAT--TACTCAA--C--AGTTCACTGACGCCA-AT---TCACA-CTTGGCACG-ATTAAACC-CCATAAAA--TACACGTATACA-CGACTTG---GAAT-AAAAGTTCC--GCTTCCAGCCACA-GA-CTC-G-CA-GTC-TTT-CACTTTGC--AACGATTC-GGTACGGATACCGCCGGACTTC-AAC-TAACTG-TAAAA-TT---------------------CGG-GAAACACCCATTT-CTATCTCAGACTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGC-TATATCCT--AAAA-C-CCTTC-ACG---AGGAAGTAA-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-AT-AG-CACAAAA--ATGTC-AAC-T-----CCA---AGAAAGTT-TAACCCG-AAACACCTCA-AA--TATTAACAAAATTA----GC-CGGC---TGGAGAAA-----------CAT----------AT-T----GG-CTCCCTG-GTT-ACCCATCTA-CCAGACTAACTGCTG-GATTTAAAAAAA--A------AAAAAGCA--CTTCCTGCTAGACA-A----CT--GG-ACAC-GTGGCCTCA-CGCTTGACGAACAAACGGCCACTGC-------------------AATGGGTTTCCTAAA--AATAGA-------CCT-A-CTGG--CCAAC-ACTCATATA-ACG-G-AACCCA---ACTAACATACAGCCAAG------ACA-ACAC-------AAAC-AGATCTAAAA-
gi|10 : gcgaaataacaaaacaaaatttattataataagagaagtataaaaacaaactatttcacacactcacccactctcaccaaggaaaagtaacatacatgtactttgaacacaatatcaaataacaagcaaaaattatcaactatgaattaatattaaaaaaaacttttcttgcagcgatgtaattcaatagcgataaagaacaacgttatttctataaccaaaagtaaagttccaatataacaaactcttaccgaaaatttaatgtttccactagaaaatattacTA-CCAG--CAACTGCTG-GAAATCTTCAAAAAC------A------A--CT--CTGCTGAACAGA---ACT-GAAGAAAC-GTGATCGCA-TGCTTG----ACAAACA-CAGCTACTCTGATA---ATTGAT-CAAACCTGTTTAGTATA--TATAGA-------TCT-A-CTGA--TCAAC-ACTCACACT-ACG-GCAACTTGT-TATGGGGATA-AACCAACTA-TATACAGCCAAA-CCACAAAAC-TAATCTAAAA-CAAAATTCTATTTAATCACA
gi|11 : aaagtaagaacgttttcacggactgGG-GAAACACCCA-TTTCTATCTCAGCCTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGC-TATATCCT--AAAA-C-CCTTC-ACG---AGGAAGT-A-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-ATACG-CACAAA
gi|12 : AAT-A-ACAAATG-CTTGTCATAGAA-CCTATACA-AATAACGA--T-----TTAGT-ACACG---CAAAACTATGTAAAAC-TCTTCACCATACAAA---TT-GAACCCA-AAACA--CCG-AAA-TATTTACATAATTAGCTTAC-CGGC---TGGAGAAA-A-GCAAAGTCCACACA-GCA--AAT-TATAAGG-CTT
gi|13 : C-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGTTCTGATA---ACTGAC-CAAACCAGTTTACTTTT--TATAGA-------ACT-A-CTGG--CAAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAAT
gi|14 : ---TCAC--CTTGGCACG-GCTAGACCTCCATACAAT--ACATATATATAGTGA--CGTC-AGAT-AAA--ACCCGGTCT----------------C-A-CAGGTC-TCT-AAC--AGTACAACAATAC-AGT-CTCACATCGCC-GACTGC-AAC-CAAATG-TACAA-TT-G----TG
gi|15 : TT-GCCA---AAACCGTT-TATCCGG-AAACA--TCG-AAA-TATTTACACAATTACCTTAC-CGAC---TGGAGAAA-A-CCAATGCCCACACA-ATA--AAT-TAAAAGG-------------------CTA-ACAGACTAA-TGCTG-GAATTCGTCAAA--C------A------A--CC
gi|18 : AAG-CTTGGC--TACTCAA--CGCAGTTTGTGAACACCA-CT---ACACA-CTTGACACA-ACCTGGCCTCCATACA----ACACGTA
gi|19 : CACTGCC-GACTTCCCAC-CAAATG-AAACA-CT-GCATGTGG-CATCT--ACCCCGG-GAAACGTCCA-TT-CTCTGTCACCCTcg
gi|2 : TTACATATA-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CCCTTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAAT-C-CCTTTT----CTCATAAAA-CC-G--TTAATTTG-TTT--AAGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTT-CTGACGCCA-CTCACTCACA-CTTGGCACG-ACCAGACCTCCGTACA-TG-ACACGC-------GA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-C--GA-C-CCG-CAGGCCCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTCCC-GACTTCTCACACAAATG-AAACA-CT------TGGCCCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCA-CCTCGCACGTG-GCACAATACCAGATG---GATA--TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAA---GGCCCGGG-T-TATCTT--AAAA-C-CCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATACCGCTAT-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TTAT-GCCA---AAACCGTT-ATACCCGAAAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAACA-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTT---GCT-ACCCATCTA-CCAGACTAAC--CTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCTAAAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAA--A-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|20 : aataactggcaaatgcctaaacacgacaatcaaagtcaaagtgtatataataaccacatatttgccaaatgtttcggctttttccacacttttgaaatattgttctttttacttaataag-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAaatacaag
gi|3 : TTA-AT-TA-----A-TACCATTAATTACTCACC--ATAATTAATT-AAG-TTGATA-CC-TTGCTGCTT-CATAACAGAAAAAGTT--CATCC---TCTAATCGCAATACACTTTTT-ATACT-ATAAAA-CCCGGTTTAATTTG-TT-AAAAGTTAAA-TGTATA--T-AATATTTAATGACACC-AAATTGAAAGCTTTGGTGTTAGTCAATCC--AGTTCGCTGACGCCATCA---TCACATCTTGCAACGTACCAGACCTCCGTACA---------TAT-CAGCGA--TGCCCGGAC-AAA--CTCC--TCTTCCAGCC-CC-GACC-C-GCCAGGCC-TCTCCAC--TGT--AACGATAC-GGTCCTCACACTG-C-GAAGTCCCAC-AAAATGAAAACATCTGG----TGGCCCTCCTAACCGCGGCGAAACGCCGA-CT-TTCTGTCATCCCTGCACGTGTCCACAATACCAGATGGGAAGTATCTCAGCCGTCGAGATCACCTTTTCTG--ATC--GCCGG--ATATTCTCACAATCACGGCCCGGGTT-TATCTTAAAAAA-C-CCCTTGGCAAT-CTGATAT-AGACAATTGACCTATCCTAAAATCCTGTCCACGATACAGC--TATTAATTAGTAACAAGTTACAAAA--ATGTCAAACTTAAT-G-CA---AAACCGGTATAACCCG-AAAGAC-TCG-AATGTATTTA
gi|4 : actgtaatgaagttcttttaaggattttgtgaggaagcagagaaaaagatgaaacgcagaataaacaatcaaaaatttatataataagataagtttgaaaaaacccaaacaacaaagtatttacactcagatttaactcactcactccacgcctagggcaactagcatacaaaataaagtatcagttattactaaatcaagaagtaactttctgcagaaattataacgcaacagtgcaataactggcaatgctaaacacacaatcaaagtcaaaagtgtatgatataacacatattgccaaatcgtttcggcttttccaactttgaaatattgttttttacttaataatgtTTA-ATATA-----A-TACCATA-----TTTCCG--ATA-TTATTT-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-ACTTTT-CTACT-ATAAAA-CCCG--TTAATTTG-TTTCAAGGT--------------CAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGA--AAA--CTCC--TCTTCCAGCC-CCTGA-C-C-G-CAGGCC-TCT-CAC---GCA-AACGATACGGGT-CTCACACTCCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAG----GGCCCGGG-T-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTGTCCA-GATAACGC--TATTA-ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AAT-TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTNA
gi|4 : agCCAAA--CCGGTTNA------A--TCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGTA-atctcctgctggacaatctaaaaaacgtggccgtataaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|4 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaATT--TATAGA-------ACT-AACTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAA---CAAACTAATA--AAAATCCAACTTCATCACAtaaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|5 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaccaaaccggttnaatctcctgctggacaatctaaaaaacgtggccgtataaTTA-ATATG-----A-TACCATA-----TTTCCG--ATA-TGATTT-AAG-TT-ATA-CC-TAGCTGCTT-C-TAACAGAAAAACTT--CATCT---GATA---GTAACAT-CCTTTC-GTACT-ATAAAA-CCCG--TTAATTTG-CTTCAATGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AGAATGAAAG-TTTGGT--TACTCAA--C--AGTTCACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACTCATACAACAA--TGCC-GGAC-AAA--CTCC--GCTTCCAGCC-ACAGA-CTC-G-CAAGCC-TCT-CAC--TGTA-AACGATAC-GGT-CTCACAATGCC-GACGTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCACCCTCGCACGTG-CCACAATACCAAATC---AGTAT-TCCCCCGTCG-GA-CACC-TTCCTG--A-C--GCTGGGAGTATTC-CACAAT---GGTCCGGG-TATATCCTA-AAAA-A-CCCTT-GCA---CTAAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----ATAGT-ACAAG-TACAAAT--ATGTAAAAC-TATT-GCAA---AAAACGTT-TAACCCG-AAACA--CCGAAA--TAT
gi|6 : cctactgtattgaagttcttttaaggattgtgtgaggaagcagaggaaaaagataaaacacaaaataaacaatcaaaatgtatttatataataagacaagtttggaaaaaaaccaaacaacaaagtatttacactcactcacttccagggcaaatagcatacaaaattaagtatcagttattgactaatgcttcaaaaaatactttcttgcagaaatataatacagttgtcaatcgcaggcaatgctaacaccacaatctaagtcaaagtgttaatatcatacactactgccggatagtttcggttttcagcttgaaaatattgcTTA-ATATA-------TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATAACC-TTGCTGCTTTC-TAACAGAAAAAGTT--TATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAAACCCG--TTAATTTG-TTTCAAGGTTAA--TGT-TA--TCAATAA--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CCTGA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACT-CC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACA-----GGGCCGGG-T-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAGCGC--T-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT--ATCCCG-AAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTATG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACC-GTTTACTATT--TAT-GA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|7 : TTA-ATATA-----A-TACAATA-----TTTTCATTATA-TGATTTTAAG-TT-ATA-CA-TTGCTGCTT-C-TAACAGAAAATGTT--CACAA---TGTA---GCAATAC-CATTTTCGT--T-ATTAAA-CCCG-----ATTT---TTCTGTGCTGAA-TGC--A--TTAATAT--AAT-ACACACAAATTGAAAG-TTTGGT--TACTCAA--T--AGTTCACTGACGCCA-CT---TCGCA-CTTGGCACG-TCTAGACCTCCGTACAATGCACATGTATACAGCGA--TGCC-GGATAAAA--CTCC--GCTTC
gi|8 : ttcacacatactcattctcaccaagggcaactagcatacataataatgtatcaaaattgttgacaatgaattgaagaaataactttcttgcagcgatattttccagtagtcaatataacaggcaatgctaacaccacaatcaaagtcagggtgtcaacatatcacaatattgcccaatacatgtagtttcggttttcaacttgaaaacattacCACGTG-CCACAATACCAGATG---AGTAT-CCCCCCGTCG-GA-CACC-TTTCTA--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-T-TATCCT--AAAACC-CCCTT-GCACGGCTGGAAC-A-A
gi|8 : AACCCCCTTGCACGGC---TGGAACAA-ATCCACTGCTCACGCA-GTA--AAT-TAAAAGG-CTCCCTG-GCT-ACCCATCTA-CCAGACTAACTACTG-AAATTCGCCAAA--C------A------A--CTTCCTGCTGGACA-A---TCT-AAA-ACAC-GCGGCCACATCCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGAAGTTAGAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAATCCAACTTCATCACAatccactgctcacgcagtaaattaaaaggctccctggctacccatctaccagactaactactgaaattcgccaaacaacttcctgctggacaatctaaaacacgcggccacatcccttgacaaacggccgctgctctgataactgaccaaaccggtttactatttatagaagttagaactactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacgccacaaaaccaaactaagataaaatccaacttcatcaca
gi|9 : cacgtgccacaataccagatgagtatccccccgtcggacacctttctaacgctgggagtattccacaatggcccgggttatcctaaATCTCTTTAC-CGGCATCTGGAAAAA-C-TCAATGCAGACACACGTATTAATGTAAAAGGGCTTTCTGAGCTGACCCACTTAACCAGACTAAC--CTGTGAATTCGCCAAA--A------A------AATCTCCCTGCTGAGCA-AAATCCT-AAA-AGAGAGAGGCCGCA-CCCT-G----A-AAACGGCCGCTGCTTGGATATACACTGACACAAACCGGTTTACTATTAGTATAGA-------ACTGA-CTAGGCCCAACCACTCACACTCACGCGCAACCTGTGTACGGGCATA-AACCAATTATTATACATACACGCCCACAAAACACAAACTAAAATTAAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCTGTAATGAAGTTCTTTTTAGGATTTTGTGTAGGAAGCAGAGAAAAAGATAAATCGCAGAATAAACAATCAAAATTTACATTAATATCAAAACAAATTTGA
Unaligned ( gi|17 ): CCGCAGAATAAACAGAAACAAAATTTATTTTAATAGTACGAAAAACTATTATTTGCACACACTCACTCTCACCAAGAAAAACTAACA
Unaligned ( gi|21 ): TCAATAGTCAATAAAAGGCAATGTTAACACCACAATCAACATTAACGTGTCA
Alignments
lowQualScore : 1111111 111111 111 111 22222 11 1111 222222 11 1 111111 1 11 11 1111 1 11 1 111 222222 11 22 111 1111111111111111 1111 1111 1111111
lowQualScore : 5 4444444 333333 66 5 3 5 5 5 5 5 5 5 1 77 0 000 000 5 3 8888 5 5 0 999 5 0 1 0 77 33333 1 999 5 33 5 66 66 66 6 5 8888 4 4 9999 0 1 66 5 77 66 66 0 5 111111 5 5 5 999 00 5 1 2 5 7 5 5 5 888888 1 77 5 5 5 5 5 888 88 5 5 5 33 5 33 5 2222 8 11 5 0 77 555 4 4 6 5 2 5 5 66 444444 5 55 77 5 55 5 888 2 88 5 11 5 11 777 5 888 000 5 66 5 5 1 5 5 5 3 5 8888888888888888 66 5 1111 5 5 4 4 0000 888 5 1 66 6666666 5 5 66 5 5 5 5 5 22 5 0 99 5 55
lowQualScore : . ....... ...... .. . . . . . . . . . . .. . ... ... . . .... . . . ... . . . . .. ..... . ... . .. . .. .. .. . . .... . . .... . . .. . .. .. .. . . ...... . . . ... .. . . . . . . . . ...... . .. . . . . . ... .. . . . .. . .. . .... . .. . . .. ... . . . . . . . .. ...... . .. .. . .. . ... . .. . .. . .. ... . ... ... . .. . . . . . . . . ................ .. . .... . . . . .... ... . . .. ....... . . .. . . . . . .. . . .. . ..
lowQualScore : 7 6666666 555555 99 0 1 0 0 0 0 0 0 0 7 99 1 000 000 7 0 9999 7 7 7 666 7 7 0 1 11 44444 7 666 7 66 0 99 99 99 2 0 8888 4 4 1111 1 4 99 0 22 99 99 7 7 666666 7 7 7 666 77 7 4 5 0 0 0 0 0 111111 4 99 0 0 0 6 0 888 11 0 0 0 88 0 88 0 1111 8 99 0 0 00 666 4 4 5 0 5 0 0 99 111111 0 99 99 7 66 0 888 5 44 0 99 0 99 444 0 888 111 0 99 0 0 4 7 7 0 2 0 2222222222222222 11 0 0000 0 0 4 4 6666 888 0 4 99 2222222 0 0 99 0 0 0 0 0 66 0 1 22 0 11
consensus : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-CG-CAGG-CCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGT-TATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
Reference ( family-2748 ) : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-CG-CAGG-CCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGTATATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|1 : TTA-ATATACTAGTACTACCATA-----TTTTTG--TTA-T-ATTC-AAAATT-ATA-AA-TTGCTGCTT-C-CAACAGAAAA-GTTATCA-CTGTACATA---GCAATAA-C-TTCT-GCGCT-ATTAAA----G--ACAATACGATTTCAGTGCCAAACTGT-TAGTTTAATG---AAT-AGA----AATTGGAAG-TTTGAT--TACTCAA--C--AGTTCACTGACGCCA-AT---TCACA-CTTGGCACG-ATTAAACC-CCATAAAA--TACACGTATACA-CGACTTG---GAAT-AAAAGTTCC--GCTTCCAGCCACA-GA-CTCG-CA-G-TCTTT-CACTTTGC--AACGATTC-GGTACGGATACCGCCGGACTTC-AAC-TAACTG-TAAAA-TT---------------------CGG-GAAACACCCATTT-CTATCTCAGACTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGCTATATCCT--AAAA-C-CCTTC-ACG---AGGAAGTAA-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-AT-AG-CACAAAA--ATGTC-AAC-T-----CCA---AGAAAGTT-TAACCCG-AAACACCTCA-AA--TATTAACAAAATTA----GC-CGGC---TGGAGAAA-----------CAT----------AT-T----GG-CTCCCTG-GTT-ACCCATCTA-CCAGACTAACTGCTG-GATTTAAAAAAA--A------AAAAAGCA--CTTCCTGCTAGACA-A----CT--GG-ACAC-GTGGCCTCA-CGCTTGACGAACAAACGGCCACTGC-------------------AATGGGTTTCCTAAA--AATAGA-------CCT-A-CTGG--CCAAC-ACTCATATA-ACG-G-AACCCA---ACTAACATACAGCCAAG------ACA-ACAC-------AAAC-AGATCTAAAA-
gi|10 : gcgaaataacaaaacaaaatttattataataagagaagtataaaaacaaactatttcacacactcacccactctcaccaaggaaaagtaacatacatgtactttgaacacaatatcaaataacaagcaaaaattatcaactatgaattaatattaaaaaaaacttttcttgcagcgatgtaattcaatagcgataaagaacaacgttatttctataaccaaaagtaaagttccaatataacaaactcttaccgaaaatttaatgtttccactagaaaatattacTA-CCAG--CAACTGCTG-GAAATCTTCAAAAAC------A------A--CT--CTGCTGAACAGA---ACT-GAAGAAAC-GTGATCGCA-TGCTTG----ACAAACA-CAGCTACTCTGATA---ATTGAT-CAAACCTGTTTAGTATA--TATAGA-------TCT-A-CTGA--TCAAC-ACTCACACT-ACG-GCAACTTGT-TATGGGGATA-AACCAACTA-TATACAGCCAAA-CCACAAAAC-TAATCTAAAA-CAAAATTCTATTTAATCACA
gi|11 : aaagtaagaacgttttcacggactgGG-GAAACACCCA-TTTCTATCTCAGCCTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGCTATATCCT--AAAA-C-CCTTC-ACG---AGGAAGT-A-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-ATACG-CACAAA
gi|12 : AAT-A-ACAAATG-CTTGTCATAGAA-CCTATACA-AATAACGA--T-----TTAGT-ACACG---CAAAACTATGTAAAAC-TCTTCACCATACAAA---TT-GAACCCA-AAACA--CCG-AAA-TATTTACATAATTAGCTTAC-CGGC---TGGAGAAA-A-GCAAAGTCCACACA-GCA--AAT-TATAAGG-CTT
gi|13 : C-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGTTCTGATA---ACTGAC-CAAACCAGTTTACTTTT--TATAGA-------ACT-A-CTGG--CAAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAAT
gi|14 : ---TCAC--CTTGGCACG-GCTAGACCTCCATACAAT--ACATATATATAGTGA--CGTC-AGAT-AAA--ACCCGGTCT----------------CA-CAGG-TCTCT-AAC--AGTACAACAATAC-AGT-CTCACATCGCC-GACTGC-AAC-CAAATG-TACAA-TT-G----TG
gi|15 : TT-GCCA---AAACCGTT-TATCCGG-AAACA--TCG-AAA-TATTTACACAATTACCTTAC-CGAC---TGGAGAAA-A-CCAATGCCCACACA-ATA--AAT-TAAAAGG-------------------CTA-ACAGACTAA-TGCTG-GAATTCGTCAAA--C------A------A--CC
gi|18 : AAG-CTTGGC--TACTCAA--CGCAGTTTGTGAACACCA-CT---ACACA-CTTGACACA-ACCTGGCCTCCATACA----ACACGTA
gi|19 : CACTGCC-GACTTCCCAC-CAAATG-AAACA-CT-GCATGTGG-CATCT--ACCCCGG-GAAACGTCCA-TT-CTCTGTCACCCTcg
gi|2 : TTACATATA-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CCCTTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAAT-C-CCTTTT----CTCATAAAA-CC-G--TTAATTTG-TTT--AAGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTT-CTGACGCCA-CTCACTCACA-CTTGGCACG-ACCAGACCTCCGTACA-TG-ACACGC-------GA--TGCC-GGAC-AAA--CTCC--TCTTCCAG-C-CC-GACC-CG-CAGGCCCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTCCC-GACTTCTCACACAAATG-AAACA-CT------TGGCCCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCA-CCTCGCACGTG-GCACAATACCAGATG---GATA--TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAA---GGCCCGGGT-TATCTT--AAAA-C-CCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATACCGCTAT-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TTAT-GCCA---AAACCGTT-ATACCCGAAAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAACA-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTT---GCT-ACCCATCTA-CCAGACTAAC--CTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCTAAAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAA--A-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|20 : aataactggcaaatgcctaaacacgacaatcaaagtcaaagtgtatataataaccacatatttgccaaatgtttcggctttttccacacttttgaaatattgttctttttacttaataag-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAaatacaag
gi|3 : TTA-AT-TA-----A-TACCATTAATTACTCACC--ATAATTAATT-AAG-TTGATA-CC-TTGCTGCTT-CATAACAGAAAAAGTT--CATCC---TCTAATCGCAATACACTTTTT-ATACT-ATAAAA-CCCGGTTTAATTTG-TT-AAAAGTTAAA-TGTATA--T-AATATTTAATGACACC-AAATTGAAAGCTTTGGTGTTAGTCAATCC--AGTTCGCTGACGCCATCA---TCACATCTTGCAACGTACCAGACCTCCGTACA---------TAT-CAGCGA--TGCCCGGAC-AAA--CTCC--TCTTCCAGCC-CC-GACC-CGCCAGG-CCTCTCCAC--TGT--AACGATAC-GGTCCTCACACTG-C-GAAGTCCCAC-AAAATGAAAACATCTGG----TGGCCCTCCTAACCGCGGCGAAACGCCGA-CT-TTCTGTCATCCCTGCACGTGTCCACAATACCAGATGGGAAGTATCTCAGCCGTCGAGATCACCTTTTCTG--ATC--GCCGG--ATATTCTCACAATCACGGCCCGGGTTTATCTTAAAAAA-C-CCCTTGGCAAT-CTGATAT-AGACAATTGACCTATCCTAAAATCCTGTCCACGATACAGC--TATTAATTAGTAACAAGTTACAAAA--ATGTCAAACTTAAT-G-CA---AAACCGGTATAACCCG-AAAGAC-TCG-AATGTATTTA
gi|4 : actgtaatgaagttcttttaaggattttgtgaggaagcagagaaaaagatgaaacgcagaataaacaatcaaaaatttatataataagataagtttgaaaaaacccaaacaacaaagtatttacactcagatttaactcactcactccacgcctagggcaactagcatacaaaataaagtatcagttattactaaatcaagaagtaactttctgcagaaattataacgcaacagtgcaataactggcaatgctaaacacacaatcaaagtcaaaagtgtatgatataacacatattgccaaatcgtttcggcttttccaactttgaaatattgttttttacttaataatgtTTA-ATATA-----A-TACCATA-----TTTCCG--ATA-TTATTT-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-ACTTTT-CTACT-ATAAAA-CCCG--TTAATTTG-TTTCAAGGT--------------CAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGA--AAA--CTCC--TCTTCCAGCC-CCTGA-C-CG-CAGG-CCTCT-CAC---GCA-AACGATACGGGT-CTCACACTCCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAG----GGCCCGGGT-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTGTCCA-GATAACGC--TATTA-ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AAT-TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTNA
gi|4 : agCCAAA--CCGGTTNA------A--TCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGTA-atctcctgctggacaatctaaaaaacgtggccgtataaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|4 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaATT--TATAGA-------ACT-AACTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAA---CAAACTAATA--AAAATCCAACTTCATCACAtaaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|5 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaccaaaccggttnaatctcctgctggacaatctaaaaaacgtggccgtataaTTA-ATATG-----A-TACCATA-----TTTCCG--ATA-TGATTT-AAG-TT-ATA-CC-TAGCTGCTT-C-TAACAGAAAAACTT--CATCT---GATA---GTAACAT-CCTTTC-GTACT-ATAAAA-CCCG--TTAATTTG-CTTCAATGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AGAATGAAAG-TTTGGT--TACTCAA--C--AGTTCACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACTCATACAACAA--TGCC-GGAC-AAA--CTCC--GCTTCCAGCC-ACAGA-CTCG-CAAG-CCTCT-CAC--TGTA-AACGATAC-GGT-CTCACAATGCC-GACGTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCACCCTCGCACGTG-CCACAATACCAAATC---AGTAT-TCCCCCGTCG-GA-CACC-TTCCTG--A-C--GCTGGGAGTATTC-CACAAT---GGTCCGGGTATATCCTA-AAAA-A-CCCTT-GCA---CTAAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----ATAGT-ACAAG-TACAAAT--ATGTAAAAC-TATT-GCAA---AAAACGTT-TAACCCG-AAACA--CCGAAA--TAT
gi|6 : cctactgtattgaagttcttttaaggattgtgtgaggaagcagaggaaaaagataaaacacaaaataaacaatcaaaatgtatttatataataagacaagtttggaaaaaaaccaaacaacaaagtatttacactcactcacttccagggcaaatagcatacaaaattaagtatcagttattgactaatgcttcaaaaaatactttcttgcagaaatataatacagttgtcaatcgcaggcaatgctaacaccacaatctaagtcaaagtgttaatatcatacactactgccggatagtttcggttttcagcttgaaaatattgcTTA-ATATA-------TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATAACC-TTGCTGCTTTC-TAACAGAAAAAGTT--TATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAAACCCG--TTAATTTG-TTTCAAGGTTAA--TGT-TA--TCAATAA--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CCTGA-C-CG-CAGG-CCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACT-CC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACA-----GGGCCGGGT-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAGCGC--T-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT--ATCCCG-AAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTATG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACC-GTTTACTATT--TAT-GA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|7 : TTA-ATATA-----A-TACAATA-----TTTTCATTATA-TGATTTTAAG-TT-ATA-CA-TTGCTGCTT-C-TAACAGAAAATGTT--CACAA---TGTA---GCAATAC-CATTTTCGT--T-ATTAAA-CCCG-----ATTT---TTCTGTGCTGAA-TGC--A--TTAATAT--AAT-ACACACAAATTGAAAG-TTTGGT--TACTCAA--T--AGTTCACTGACGCCA-CT---TCGCA-CTTGGCACG-TCTAGACCTCCGTACAATGCACATGTATACAGCGA--TGCC-GGATAAAA--CTCC--GCTTC
gi|8 : ttcacacatactcattctcaccaagggcaactagcatacataataatgtatcaaaattgttgacaatgaattgaagaaataactttcttgcagcgatattttccagtagtcaatataacaggcaatgctaacaccacaatcaaagtcagggtgtcaacatatcacaatattgcccaatacatgtagtttcggttttcaacttgaaaacattacCACGTG-CCACAATACCAGATG---AGTAT-CCCCCCGTCG-GA-CACC-TTTCTA--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGT-TATCCT--AAAACC-CCCTT-GCACGGCTGGAAC-A-A
gi|8 : AACCCCCTTGCACGGC---TGGAACAA-ATCCACTGCTCACGCA-GTA--AAT-TAAAAGG-CTCCCTG-GCT-ACCCATCTA-CCAGACTAACTACTG-AAATTCGCCAAA--C------A------A--CTTCCTGCTGGACA-A---TCT-AAA-ACAC-GCGGCCACATCCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGAAGTTAGAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAATCCAACTTCATCACAatccactgctcacgcagtaaattaaaaggctccctggctacccatctaccagactaactactgaaattcgccaaacaacttcctgctggacaatctaaaacacgcggccacatcccttgacaaacggccgctgctctgataactgaccaaaccggtttactatttatagaagttagaactactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacgccacaaaaccaaactaagataaaatccaacttcatcaca
gi|9 : cacgtgccacaataccagatgagtatccccccgtcggacacctttctaacgctgggagtattccacaatggcccgggttatcctaaATCTCTTTAC-CGGCATCTGGAAAAA-C-TCAATGCAGACACACGTATTAATGTAAAAGGGCTTTCTGAGCTGACCCACTTAACCAGACTAAC--CTGTGAATTCGCCAAA--A------A------AATCTCCCTGCTGAGCA-AAATCCT-AAA-AGAGAGAGGCCGCA-CCCT-G----A-AAACGGCCGCTGCTTGGATATACACTGACACAAACCGGTTTACTATTAGTATAGA-------ACTGA-CTAGGCCCAACCACTCACACTCACGCGCAACCTGTGTACGGGCATA-AACCAATTATTATACATACACGCCCACAAAACACAAACTAAAATTAAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCTGTAATGAAGTTCTTTTTAGGATTTTGTGTAGGAAGCAGAGAAAAAGATAAATCGCAGAATAAACAATCAAAATTTACATTAATATCAAAACAAATTTGA
Unaligned ( gi|17 ): CCGCAGAATAAACAGAAACAAAATTTATTTTAATAGTACGAAAAACTATTATTTGCACACACTCACTCTCACCAAGAAAAACTAACA
Unaligned ( gi|21 ): TCAATAGTCAATAAAAGGCAATGTTAACACCACAATCAACATTAACGTGTCA
Alignments
lowQualScore : 1111111 111111 111 111 22222 11 1111 2222 1 11 1 111111 1 11 11 1111 1 11 1 111 222222 11 22 111 1111111111111111 1111 1111 1111111
lowQualScore : 5 4444444 333333 66 5 3 5 5 5 5 5 5 5 1 77 0 000 000 5 3 8888 5 5 0 999 5 0 1 0 77 33333 1 999 5 33 5 66 66 66 6 5 8888 4 4 9999 0 1 66 5 77 66 66 4444 5 1 5 5 5 5 999 00 5 1 2 5 7 5 5 5 888888 1 77 5 5 5 5 5 888 88 5 5 5 33 5 33 5 2222 5 5 11 5 0 77 555 4 4 6 5 2 5 5 66 444444 5 55 77 5 55 5 888 2 88 5 11 5 11 777 5 888 000 5 66 5 5 1 5 5 5 3 5 8888888888888888 66 5 1111 5 5 4 4 0000 888 5 1 66 6666666 5 5 66 5 5 5 5 5 22 5 0 99 5 55
lowQualScore : . ....... ...... .. . . . . . . . . . . .. . ... ... . . .... . . . ... . . . . .. ..... . ... . .. . .. .. .. . . .... . . .... . . .. . .. .. .. .... . . . . . . ... .. . . . . . . . . ...... . .. . . . . . ... .. . . . .. . .. . .... . . .. . . .. ... . . . . . . . .. ...... . .. .. . .. . ... . .. . .. . .. ... . ... ... . .. . . . . . . . . ................ .. . .... . . . . .... ... . . .. ....... . . .. . . . . . .. . . .. . ..
lowQualScore : 7 6666666 555555 99 0 1 0 0 0 0 0 0 0 7 99 1 000 000 7 0 9999 7 7 7 666 7 7 0 1 11 44444 7 666 7 66 0 99 99 99 2 0 8888 4 4 1111 1 4 99 0 22 99 99 3333 7 4 7 7 7 7 666 77 7 4 5 0 0 0 0 0 111111 4 99 0 0 0 6 0 888 11 0 0 0 88 0 88 0 1111 0 0 99 0 0 00 666 4 4 5 0 5 0 0 99 111111 0 99 99 7 66 0 888 5 44 0 99 0 99 444 0 888 111 0 99 0 0 4 7 7 0 2 0 2222222222222222 11 0 0000 0 0 4 4 6666 888 0 4 99 2222222 0 0 99 0 0 0 0 0 66 0 1 22 0 11
consensus : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-TATATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
Reference ( family-2748 ) : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-T-TATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|1 : TTA-ATATACTAGTACTACCATA-----TTTTTG--TTA-T-ATTC-AAAATT-ATA-AA-TTGCTGCTT-C-CAACAGAAAA-GTTATCA-CTGTACATA---GCAATAA-C-TTCT-GCGCT-ATTAAA----G--ACAATACGATTTCAGTGCCAAACTGT-TAGTTTAATG---AAT-AGA----AATTGGAAG-TTTGAT--TACTCAA--C--AGTTCACTGACGCCA-AT---TCACA-CTTGGCACG-ATTAAACC-CCATAAAA--TACACGTATACA-CGACTTG---GAAT-AAAAGTTCC--GCTTCCAGCCACA-GA-CTC-G-CA-GTC-TTT-CACTTTGC--AACGATTC-GGTACGGATACCGCCGGACTTC-AAC-TAACTG-TAAAA-TT---------------------CGG-GAAACACCCATTT-CTATCTCAGACTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGC-TATATCCT--AAAA-C-CCTTC-ACG---AGGAAGTAA-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-AT-AG-CACAAAA--ATGTC-AAC-T-----CCA---AGAAAGTT-TAACCCG-AAACACCTCA-AA--TATTAACAAAATTA----GC-CGGC---TGGAGAAA-----------CAT----------AT-T----GG-CTCCCTG-GTT-ACCCATCTA-CCAGACTAACTGCTG-GATTTAAAAAAA--A------AAAAAGCA--CTTCCTGCTAGACA-A----CT--GG-ACAC-GTGGCCTCA-CGCTTGACGAACAAACGGCCACTGC-------------------AATGGGTTTCCTAAA--AATAGA-------CCT-A-CTGG--CCAAC-ACTCATATA-ACG-G-AACCCA---ACTAACATACAGCCAAG------ACA-ACAC-------AAAC-AGATCTAAAA-
gi|10 : gcgaaataacaaaacaaaatttattataataagagaagtataaaaacaaactatttcacacactcacccactctcaccaaggaaaagtaacatacatgtactttgaacacaatatcaaataacaagcaaaaattatcaactatgaattaatattaaaaaaaacttttcttgcagcgatgtaattcaatagcgataaagaacaacgttatttctataaccaaaagtaaagttccaatataacaaactcttaccgaaaatttaatgtttccactagaaaatattacTA-CCAG--CAACTGCTG-GAAATCTTCAAAAAC------A------A--CT--CTGCTGAACAGA---ACT-GAAGAAAC-GTGATCGCA-TGCTTG----ACAAACA-CAGCTACTCTGATA---ATTGAT-CAAACCTGTTTAGTATA--TATAGA-------TCT-A-CTGA--TCAAC-ACTCACACT-ACG-GCAACTTGT-TATGGGGATA-AACCAACTA-TATACAGCCAAA-CCACAAAAC-TAATCTAAAA-CAAAATTCTATTTAATCACA
gi|11 : aaagtaagaacgttttcacggactgGG-GAAACACCCA-TTTCTATCTCAGCCTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGC-TATATCCT--AAAA-C-CCTTC-ACG---AGGAAGT-A-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-ATACG-CACAAA
gi|12 : AAT-A-ACAAATG-CTTGTCATAGAA-CCTATACA-AATAACGA--T-----TTAGT-ACACG---CAAAACTATGTAAAAC-TCTTCACCATACAAA---TT-GAACCCA-AAACA--CCG-AAA-TATTTACATAATTAGCTTAC-CGGC---TGGAGAAA-A-GCAAAGTCCACACA-GCA--AAT-TATAAGG-CTT
gi|13 : C-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGTTCTGATA---ACTGAC-CAAACCAGTTTACTTTT--TATAGA-------ACT-A-CTGG--CAAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAAT
gi|14 : ---TCAC--CTTGGCACG-GCTAGACCTCCATACAAT--ACATATATATAGTGA--CGTC-AGAT-AAA--ACCCGGTCT----------------C-A-CAGGTC-TCT-AAC--AGTACAACAATAC-AGT-CTCACATCGCC-GACTGC-AAC-CAAATG-TACAA-TT-G----TG
gi|15 : TT-GCCA---AAACCGTT-TATCCGG-AAACA--TCG-AAA-TATTTACACAATTACCTTAC-CGAC---TGGAGAAA-A-CCAATGCCCACACA-ATA--AAT-TAAAAGG-------------------CTA-ACAGACTAA-TGCTG-GAATTCGTCAAA--C------A------A--CC
gi|18 : AAG-CTTGGC--TACTCAA--CGCAGTTTGTGAACACCA-CT---ACACA-CTTGACACA-ACCTGGCCTCCATACA----ACACGTA
gi|19 : CACTGCC-GACTTCCCAC-CAAATG-AAACA-CT-GCATGTGG-CATCT--ACCCCGG-GAAACGTCCA-TT-CTCTGTCACCCTcg
gi|2 : TTACATATA-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CCCTTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAAT-C-CCTTTT----CTCATAAAA-CC-G--TTAATTTG-TTT--AAGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTT-CTGACGCCA-CTCACTCACA-CTTGGCACG-ACCAGACCTCCGTACA-TG-ACACGC-------GA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-C--GA-C-CCG-CAGGCCCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTCCC-GACTTCTCACACAAATG-AAACA-CT------TGGCCCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCA-CCTCGCACGTG-GCACAATACCAGATG---GATA--TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAA---GGCCCGGG-T-TATCTT--AAAA-C-CCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATACCGCTAT-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TTAT-GCCA---AAACCGTT-ATACCCGAAAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAACA-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTT---GCT-ACCCATCTA-CCAGACTAAC--CTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCTAAAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAA--A-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|20 : aataactggcaaatgcctaaacacgacaatcaaagtcaaagtgtatataataaccacatatttgccaaatgtttcggctttttccacacttttgaaatattgttctttttacttaataag-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAaatacaag
gi|3 : TTA-AT-TA-----A-TACCATTAATTACTCACC--ATAATTAATT-AAG-TTGATA-CC-TTGCTGCTT-CATAACAGAAAAAGTT--CATCC---TCTAATCGCAATACACTTTTT-ATACT-ATAAAA-CCCGGTTTAATTTG-TT-AAAAGTTAAA-TGTATA--T-AATATTTAATGACACC-AAATTGAAAGCTTTGGTGTTAGTCAATCC--AGTTCGCTGACGCCATCA---TCACATCTTGCAACGTACCAGACCTCCGTACA---------TAT-CAGCGA--TGCCCGGAC-AAA--CTCC--TCTTCCAGCC-CC-GACC-C-GCCAGGCC-TCTCCAC--TGT--AACGATAC-GGTCCTCACACTG-C-GAAGTCCCAC-AAAATGAAAACATCTGG----TGGCCCTCCTAACCGCGGCGAAACGCCGA-CT-TTCTGTCATCCCTGCACGTGTCCACAATACCAGATGGGAAGTATCTCAGCCGTCGAGATCACCTTTTCTG--ATC--GCCGG--ATATTCTCACAATCACGGCCCGGGTT-TATCTTAAAAAA-C-CCCTTGGCAAT-CTGATAT-AGACAATTGACCTATCCTAAAATCCTGTCCACGATACAGC--TATTAATTAGTAACAAGTTACAAAA--ATGTCAAACTTAAT-G-CA---AAACCGGTATAACCCG-AAAGAC-TCG-AATGTATTTA
gi|4 : actgtaatgaagttcttttaaggattttgtgaggaagcagagaaaaagatgaaacgcagaataaacaatcaaaaatttatataataagataagtttgaaaaaacccaaacaacaaagtatttacactcagatttaactcactcactccacgcctagggcaactagcatacaaaataaagtatcagttattactaaatcaagaagtaactttctgcagaaattataacgcaacagtgcaataactggcaatgctaaacacacaatcaaagtcaaaagtgtatgatataacacatattgccaaatcgtttcggcttttccaactttgaaatattgttttttacttaataatgtTTA-ATATA-----A-TACCATA-----TTTCCG--ATA-TTATTT-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-ACTTTT-CTACT-ATAAAA-CCCG--TTAATTTG-TTTCAAGGT--------------CAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGA--AAA--CTCC--TCTTCCAGCC-CCTGA-C-C-G-CAGGCC-TCT-CAC---GCA-AACGATACGGGT-CTCACACTCCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAG----GGCCCGGG-T-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTGTCCA-GATAACGC--TATTA-ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AAT-TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTNA
gi|4 : agCCAAA--CCGGTTNA------A--TCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGTA-atctcctgctggacaatctaaaaaacgtggccgtataaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|4 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaATT--TATAGA-------ACT-AACTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAA---CAAACTAATA--AAAATCCAACTTCATCACAtaaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|5 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaccaaaccggttnaatctcctgctggacaatctaaaaaacgtggccgtataaTTA-ATATG-----A-TACCATA-----TTTCCG--ATA-TGATTT-AAG-TT-ATA-CC-TAGCTGCTT-C-TAACAGAAAAACTT--CATCT---GATA---GTAACAT-CCTTTC-GTACT-ATAAAA-CCCG--TTAATTTG-CTTCAATGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AGAATGAAAG-TTTGGT--TACTCAA--C--AGTTCACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACTCATACAACAA--TGCC-GGAC-AAA--CTCC--GCTTCCAGCC-ACAGA-CTC-G-CAAGCC-TCT-CAC--TGTA-AACGATAC-GGT-CTCACAATGCC-GACGTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCACCCTCGCACGTG-CCACAATACCAAATC---AGTAT-TCCCCCGTCG-GA-CACC-TTCCTG--A-C--GCTGGGAGTATTC-CACAAT---GGTCCGGG-TATATCCTA-AAAA-A-CCCTT-GCA---CTAAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----ATAGT-ACAAG-TACAAAT--ATGTAAAAC-TATT-GCAA---AAAACGTT-TAACCCG-AAACA--CCGAAA--TAT
gi|6 : cctactgtattgaagttcttttaaggattgtgtgaggaagcagaggaaaaagataaaacacaaaataaacaatcaaaatgtatttatataataagacaagtttggaaaaaaaccaaacaacaaagtatttacactcactcacttccagggcaaatagcatacaaaattaagtatcagttattgactaatgcttcaaaaaatactttcttgcagaaatataatacagttgtcaatcgcaggcaatgctaacaccacaatctaagtcaaagtgttaatatcatacactactgccggatagtttcggttttcagcttgaaaatattgcTTA-ATATA-------TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATAACC-TTGCTGCTTTC-TAACAGAAAAAGTT--TATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAAACCCG--TTAATTTG-TTTCAAGGTTAA--TGT-TA--TCAATAA--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CCTGA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACT-CC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACA-----GGGCCGGG-T-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAGCGC--T-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT--ATCCCG-AAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTATG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACC-GTTTACTATT--TAT-GA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|7 : TTA-ATATA-----A-TACAATA-----TTTTCATTATA-TGATTTTAAG-TT-ATA-CA-TTGCTGCTT-C-TAACAGAAAATGTT--CACAA---TGTA---GCAATAC-CATTTTCGT--T-ATTAAA-CCCG-----ATTT---TTCTGTGCTGAA-TGC--A--TTAATAT--AAT-ACACACAAATTGAAAG-TTTGGT--TACTCAA--T--AGTTCACTGACGCCA-CT---TCGCA-CTTGGCACG-TCTAGACCTCCGTACAATGCACATGTATACAGCGA--TGCC-GGATAAAA--CTCC--GCTTC
gi|8 : ttcacacatactcattctcaccaagggcaactagcatacataataatgtatcaaaattgttgacaatgaattgaagaaataactttcttgcagcgatattttccagtagtcaatataacaggcaatgctaacaccacaatcaaagtcagggtgtcaacatatcacaatattgcccaatacatgtagtttcggttttcaacttgaaaacattacCACGTG-CCACAATACCAGATG---AGTAT-CCCCCCGTCG-GA-CACC-TTTCTA--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-T-TATCCT--AAAACC-CCCTT-GCACGGCTGGAAC-A-A
gi|8 : AACCCCCTTGCACGGC---TGGAACAA-ATCCACTGCTCACGCA-GTA--AAT-TAAAAGG-CTCCCTG-GCT-ACCCATCTA-CCAGACTAACTACTG-AAATTCGCCAAA--C------A------A--CTTCCTGCTGGACA-A---TCT-AAA-ACAC-GCGGCCACATCCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGAAGTTAGAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAATCCAACTTCATCACAatccactgctcacgcagtaaattaaaaggctccctggctacccatctaccagactaactactgaaattcgccaaacaacttcctgctggacaatctaaaacacgcggccacatcccttgacaaacggccgctgctctgataactgaccaaaccggtttactatttatagaagttagaactactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacgccacaaaaccaaactaagataaaatccaacttcatcaca
gi|9 : cacgtgccacaataccagatgagtatccccccgtcggacacctttctaacgctgggagtattccacaatggcccgggttatcctaaATCTCTTTAC-CGGCATCTGGAAAAA-C-TCAATGCAGACACACGTATTAATGTAAAAGGGCTTTCTGAGCTGACCCACTTAACCAGACTAAC--CTGTGAATTCGCCAAA--A------A------AATCTCCCTGCTGAGCA-AAATCCT-AAA-AGAGAGAGGCCGCA-CCCT-G----A-AAACGGCCGCTGCTTGGATATACACTGACACAAACCGGTTTACTATTAGTATAGA-------ACTGA-CTAGGCCCAACCACTCACACTCACGCGCAACCTGTGTACGGGCATA-AACCAATTATTATACATACACGCCCACAAAACACAAACTAAAATTAAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCTGTAATGAAGTTCTTTTTAGGATTTTGTGTAGGAAGCAGAGAAAAAGATAAATCGCAGAATAAACAATCAAAATTTACATTAATATCAAAACAAATTTGA
Unaligned ( gi|17 ): CCGCAGAATAAACAGAAACAAAATTTATTTTAATAGTACGAAAAACTATTATTTGCACACACTCACTCTCACCAAGAAAAACTAACA
Unaligned ( gi|21 ): TCAATAGTCAATAAAAGGCAATGTTAACACCACAATCAACATTAACGTGTCA
Alignments
lowQualScore : 1111111 111111 111 111 22222 11 1111 222222 11 1 111111 1 11 11 1111 1 11 1 111 222222 11 22 111 1111111111111111 1111 1111 1111111
lowQualScore : 5 4444444 333333 66 5 3 5 5 5 5 5 5 5 1 77 0 000 000 5 3 8888 5 5 0 999 5 0 1 0 77 33333 1 999 5 33 5 66 66 66 6 5 8888 4 4 9999 0 1 66 5 77 66 66 0 5 111111 5 5 5 999 00 5 1 2 5 7 5 5 5 888888 1 77 5 5 5 5 5 888 88 5 5 5 33 5 33 5 2222 8 11 5 0 77 555 4 4 6 5 2 5 5 66 444444 5 55 77 5 55 5 888 2 88 5 11 5 11 777 5 888 000 5 66 5 5 1 5 5 5 3 5 8888888888888888 66 5 1111 5 5 4 4 0000 888 5 1 66 6666666 5 5 66 5 5 5 5 5 22 5 0 99 5 55
lowQualScore : . ....... ...... .. . . . . . . . . . . .. . ... ... . . .... . . . ... . . . . .. ..... . ... . .. . .. .. .. . . .... . . .... . . .. . .. .. .. . . ...... . . . ... .. . . . . . . . . ...... . .. . . . . . ... .. . . . .. . .. . .... . .. . . .. ... . . . . . . . .. ...... . .. .. . .. . ... . .. . .. . .. ... . ... ... . .. . . . . . . . . ................ .. . .... . . . . .... ... . . .. ....... . . .. . . . . . .. . . .. . ..
lowQualScore : 7 6666666 555555 99 0 1 0 0 0 0 0 0 0 7 99 1 000 000 7 0 9999 7 7 7 666 7 7 0 1 11 44444 7 666 7 66 0 99 99 99 2 0 8888 4 4 1111 1 4 99 0 22 99 99 7 7 666666 7 7 7 666 77 7 4 5 0 0 0 0 0 111111 4 99 0 0 0 6 0 888 11 0 0 0 88 0 88 0 1111 8 99 0 0 00 666 4 4 5 0 5 0 0 99 111111 0 99 99 7 66 0 888 5 44 0 99 0 99 444 0 888 111 0 99 0 0 4 7 7 0 2 0 2222222222222222 11 0 0000 0 0 4 4 6666 888 0 4 99 2222222 0 0 99 0 0 0 0 0 66 0 1 22 0 11
consensus : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-CG-CAGG-CCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGT-TATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
Reference ( family-2748 ) : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-CG-CAGG-CCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGTATATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|1 : TTA-ATATACTAGTACTACCATA-----TTTTTG--TTA-T-ATTC-AAAATT-ATA-AA-TTGCTGCTT-C-CAACAGAAAA-GTTATCA-CTGTACATA---GCAATAA-C-TTCT-GCGCT-ATTAAA----G--ACAATACGATTTCAGTGCCAAACTGT-TAGTTTAATG---AAT-AGA----AATTGGAAG-TTTGAT--TACTCAA--C--AGTTCACTGACGCCA-AT---TCACA-CTTGGCACG-ATTAAACC-CCATAAAA--TACACGTATACA-CGACTTG---GAAT-AAAAGTTCC--GCTTCCAGCCACA-GA-CTCG-CA-G-TCTTT-CACTTTGC--AACGATTC-GGTACGGATACCGCCGGACTTC-AAC-TAACTG-TAAAA-TT---------------------CGG-GAAACACCCATTT-CTATCTCAGACTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGCTATATCCT--AAAA-C-CCTTC-ACG---AGGAAGTAA-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-AT-AG-CACAAAA--ATGTC-AAC-T-----CCA---AGAAAGTT-TAACCCG-AAACACCTCA-AA--TATTAACAAAATTA----GC-CGGC---TGGAGAAA-----------CAT----------AT-T----GG-CTCCCTG-GTT-ACCCATCTA-CCAGACTAACTGCTG-GATTTAAAAAAA--A------AAAAAGCA--CTTCCTGCTAGACA-A----CT--GG-ACAC-GTGGCCTCA-CGCTTGACGAACAAACGGCCACTGC-------------------AATGGGTTTCCTAAA--AATAGA-------CCT-A-CTGG--CCAAC-ACTCATATA-ACG-G-AACCCA---ACTAACATACAGCCAAG------ACA-ACAC-------AAAC-AGATCTAAAA-
gi|10 : gcgaaataacaaaacaaaatttattataataagagaagtataaaaacaaactatttcacacactcacccactctcaccaaggaaaagtaacatacatgtactttgaacacaatatcaaataacaagcaaaaattatcaactatgaattaatattaaaaaaaacttttcttgcagcgatgtaattcaatagcgataaagaacaacgttatttctataaccaaaagtaaagttccaatataacaaactcttaccgaaaatttaatgtttccactagaaaatattacTA-CCAG--CAACTGCTG-GAAATCTTCAAAAAC------A------A--CT--CTGCTGAACAGA---ACT-GAAGAAAC-GTGATCGCA-TGCTTG----ACAAACA-CAGCTACTCTGATA---ATTGAT-CAAACCTGTTTAGTATA--TATAGA-------TCT-A-CTGA--TCAAC-ACTCACACT-ACG-GCAACTTGT-TATGGGGATA-AACCAACTA-TATACAGCCAAA-CCACAAAAC-TAATCTAAAA-CAAAATTCTATTTAATCACA
gi|11 : aaagtaagaacgttttcacggactgGG-GAAACACCCA-TTTCTATCTCAGCCTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGCTATATCCT--AAAA-C-CCTTC-ACG---AGGAAGT-A-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-ATACG-CACAAA
gi|12 : AAT-A-ACAAATG-CTTGTCATAGAA-CCTATACA-AATAACGA--T-----TTAGT-ACACG---CAAAACTATGTAAAAC-TCTTCACCATACAAA---TT-GAACCCA-AAACA--CCG-AAA-TATTTACATAATTAGCTTAC-CGGC---TGGAGAAA-A-GCAAAGTCCACACA-GCA--AAT-TATAAGG-CTT
gi|13 : C-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGTTCTGATA---ACTGAC-CAAACCAGTTTACTTTT--TATAGA-------ACT-A-CTGG--CAAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAAT
gi|14 : ---TCAC--CTTGGCACG-GCTAGACCTCCATACAAT--ACATATATATAGTGA--CGTC-AGAT-AAA--ACCCGGTCT----------------CA-CAGG-TCTCT-AAC--AGTACAACAATAC-AGT-CTCACATCGCC-GACTGC-AAC-CAAATG-TACAA-TT-G----TG
gi|15 : TT-GCCA---AAACCGTT-TATCCGG-AAACA--TCG-AAA-TATTTACACAATTACCTTAC-CGAC---TGGAGAAA-A-CCAATGCCCACACA-ATA--AAT-TAAAAGG-------------------CTA-ACAGACTAA-TGCTG-GAATTCGTCAAA--C------A------A--CC
gi|18 : AAG-CTTGGC--TACTCAA--CGCAGTTTGTGAACACCA-CT---ACACA-CTTGACACA-ACCTGGCCTCCATACA----ACACGTA
gi|19 : CACTGCC-GACTTCCCAC-CAAATG-AAACA-CT-GCATGTGG-CATCT--ACCCCGG-GAAACGTCCA-TT-CTCTGTCACCCTcg
gi|2 : TTACATATA-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CCCTTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAAT-C-CCTTTT----CTCATAAAA-CC-G--TTAATTTG-TTT--AAGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTT-CTGACGCCA-CTCACTCACA-CTTGGCACG-ACCAGACCTCCGTACA-TG-ACACGC-------GA--TGCC-GGAC-AAA--CTCC--TCTTCCAG-C-CC-GACC-CG-CAGGCCCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTCCC-GACTTCTCACACAAATG-AAACA-CT------TGGCCCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCA-CCTCGCACGTG-GCACAATACCAGATG---GATA--TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAA---GGCCCGGGT-TATCTT--AAAA-C-CCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATACCGCTAT-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TTAT-GCCA---AAACCGTT-ATACCCGAAAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAACA-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTT---GCT-ACCCATCTA-CCAGACTAAC--CTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCTAAAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAA--A-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|20 : aataactggcaaatgcctaaacacgacaatcaaagtcaaagtgtatataataaccacatatttgccaaatgtttcggctttttccacacttttgaaatattgttctttttacttaataag-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAaatacaag
gi|3 : TTA-AT-TA-----A-TACCATTAATTACTCACC--ATAATTAATT-AAG-TTGATA-CC-TTGCTGCTT-CATAACAGAAAAAGTT--CATCC---TCTAATCGCAATACACTTTTT-ATACT-ATAAAA-CCCGGTTTAATTTG-TT-AAAAGTTAAA-TGTATA--T-AATATTTAATGACACC-AAATTGAAAGCTTTGGTGTTAGTCAATCC--AGTTCGCTGACGCCATCA---TCACATCTTGCAACGTACCAGACCTCCGTACA---------TAT-CAGCGA--TGCCCGGAC-AAA--CTCC--TCTTCCAGCC-CC-GACC-CGCCAGG-CCTCTCCAC--TGT--AACGATAC-GGTCCTCACACTG-C-GAAGTCCCAC-AAAATGAAAACATCTGG----TGGCCCTCCTAACCGCGGCGAAACGCCGA-CT-TTCTGTCATCCCTGCACGTGTCCACAATACCAGATGGGAAGTATCTCAGCCGTCGAGATCACCTTTTCTG--ATC--GCCGG--ATATTCTCACAATCACGGCCCGGGTTTATCTTAAAAAA-C-CCCTTGGCAAT-CTGATAT-AGACAATTGACCTATCCTAAAATCCTGTCCACGATACAGC--TATTAATTAGTAACAAGTTACAAAA--ATGTCAAACTTAAT-G-CA---AAACCGGTATAACCCG-AAAGAC-TCG-AATGTATTTA
gi|4 : actgtaatgaagttcttttaaggattttgtgaggaagcagagaaaaagatgaaacgcagaataaacaatcaaaaatttatataataagataagtttgaaaaaacccaaacaacaaagtatttacactcagatttaactcactcactccacgcctagggcaactagcatacaaaataaagtatcagttattactaaatcaagaagtaactttctgcagaaattataacgcaacagtgcaataactggcaatgctaaacacacaatcaaagtcaaaagtgtatgatataacacatattgccaaatcgtttcggcttttccaactttgaaatattgttttttacttaataatgtTTA-ATATA-----A-TACCATA-----TTTCCG--ATA-TTATTT-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-ACTTTT-CTACT-ATAAAA-CCCG--TTAATTTG-TTTCAAGGT--------------CAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGA--AAA--CTCC--TCTTCCAGCC-CCTGA-C-CG-CAGG-CCTCT-CAC---GCA-AACGATACGGGT-CTCACACTCCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAG----GGCCCGGGT-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTGTCCA-GATAACGC--TATTA-ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AAT-TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTNA
gi|4 : agCCAAA--CCGGTTNA------A--TCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGTA-atctcctgctggacaatctaaaaaacgtggccgtataaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|4 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaATT--TATAGA-------ACT-AACTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAA---CAAACTAATA--AAAATCCAACTTCATCACAtaaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|5 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaccaaaccggttnaatctcctgctggacaatctaaaaaacgtggccgtataaTTA-ATATG-----A-TACCATA-----TTTCCG--ATA-TGATTT-AAG-TT-ATA-CC-TAGCTGCTT-C-TAACAGAAAAACTT--CATCT---GATA---GTAACAT-CCTTTC-GTACT-ATAAAA-CCCG--TTAATTTG-CTTCAATGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AGAATGAAAG-TTTGGT--TACTCAA--C--AGTTCACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACTCATACAACAA--TGCC-GGAC-AAA--CTCC--GCTTCCAGCC-ACAGA-CTCG-CAAG-CCTCT-CAC--TGTA-AACGATAC-GGT-CTCACAATGCC-GACGTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCACCCTCGCACGTG-CCACAATACCAAATC---AGTAT-TCCCCCGTCG-GA-CACC-TTCCTG--A-C--GCTGGGAGTATTC-CACAAT---GGTCCGGGTATATCCTA-AAAA-A-CCCTT-GCA---CTAAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----ATAGT-ACAAG-TACAAAT--ATGTAAAAC-TATT-GCAA---AAAACGTT-TAACCCG-AAACA--CCGAAA--TAT
gi|6 : cctactgtattgaagttcttttaaggattgtgtgaggaagcagaggaaaaagataaaacacaaaataaacaatcaaaatgtatttatataataagacaagtttggaaaaaaaccaaacaacaaagtatttacactcactcacttccagggcaaatagcatacaaaattaagtatcagttattgactaatgcttcaaaaaatactttcttgcagaaatataatacagttgtcaatcgcaggcaatgctaacaccacaatctaagtcaaagtgttaatatcatacactactgccggatagtttcggttttcagcttgaaaatattgcTTA-ATATA-------TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATAACC-TTGCTGCTTTC-TAACAGAAAAAGTT--TATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAAACCCG--TTAATTTG-TTTCAAGGTTAA--TGT-TA--TCAATAA--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CCTGA-C-CG-CAGG-CCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACT-CC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACA-----GGGCCGGGT-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAGCGC--T-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT--ATCCCG-AAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTATG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACC-GTTTACTATT--TAT-GA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|7 : TTA-ATATA-----A-TACAATA-----TTTTCATTATA-TGATTTTAAG-TT-ATA-CA-TTGCTGCTT-C-TAACAGAAAATGTT--CACAA---TGTA---GCAATAC-CATTTTCGT--T-ATTAAA-CCCG-----ATTT---TTCTGTGCTGAA-TGC--A--TTAATAT--AAT-ACACACAAATTGAAAG-TTTGGT--TACTCAA--T--AGTTCACTGACGCCA-CT---TCGCA-CTTGGCACG-TCTAGACCTCCGTACAATGCACATGTATACAGCGA--TGCC-GGATAAAA--CTCC--GCTTC
gi|8 : ttcacacatactcattctcaccaagggcaactagcatacataataatgtatcaaaattgttgacaatgaattgaagaaataactttcttgcagcgatattttccagtagtcaatataacaggcaatgctaacaccacaatcaaagtcagggtgtcaacatatcacaatattgcccaatacatgtagtttcggttttcaacttgaaaacattacCACGTG-CCACAATACCAGATG---AGTAT-CCCCCCGTCG-GA-CACC-TTTCTA--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGT-TATCCT--AAAACC-CCCTT-GCACGGCTGGAAC-A-A
gi|8 : AACCCCCTTGCACGGC---TGGAACAA-ATCCACTGCTCACGCA-GTA--AAT-TAAAAGG-CTCCCTG-GCT-ACCCATCTA-CCAGACTAACTACTG-AAATTCGCCAAA--C------A------A--CTTCCTGCTGGACA-A---TCT-AAA-ACAC-GCGGCCACATCCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGAAGTTAGAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAATCCAACTTCATCACAatccactgctcacgcagtaaattaaaaggctccctggctacccatctaccagactaactactgaaattcgccaaacaacttcctgctggacaatctaaaacacgcggccacatcccttgacaaacggccgctgctctgataactgaccaaaccggtttactatttatagaagttagaactactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacgccacaaaaccaaactaagataaaatccaacttcatcaca
gi|9 : cacgtgccacaataccagatgagtatccccccgtcggacacctttctaacgctgggagtattccacaatggcccgggttatcctaaATCTCTTTAC-CGGCATCTGGAAAAA-C-TCAATGCAGACACACGTATTAATGTAAAAGGGCTTTCTGAGCTGACCCACTTAACCAGACTAAC--CTGTGAATTCGCCAAA--A------A------AATCTCCCTGCTGAGCA-AAATCCT-AAA-AGAGAGAGGCCGCA-CCCT-G----A-AAACGGCCGCTGCTTGGATATACACTGACACAAACCGGTTTACTATTAGTATAGA-------ACTGA-CTAGGCCCAACCACTCACACTCACGCGCAACCTGTGTACGGGCATA-AACCAATTATTATACATACACGCCCACAAAACACAAACTAAAATTAAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCTGTAATGAAGTTCTTTTTAGGATTTTGTGTAGGAAGCAGAGAAAAAGATAAATCGCAGAATAAACAATCAAAATTTACATTAATATCAAAACAAATTTGA
Unaligned ( gi|17 ): CCGCAGAATAAACAGAAACAAAATTTATTTTAATAGTACGAAAAACTATTATTTGCACACACTCACTCTCACCAAGAAAAACTAACA
Unaligned ( gi|21 ): TCAATAGTCAATAAAAGGCAATGTTAACACCACAATCAACATTAACGTGTCA
Alignments
lowQualScore : 1111111 111111 111 111 22222 11 1111 2222 1 11 1 111111 1 11 11 1111 1 11 1 111 222222 11 22 111 1111111111111111 1111 1111 1111111
lowQualScore : 5 4444444 333333 66 5 3 5 5 5 5 5 5 5 1 77 0 000 000 5 3 8888 5 5 0 999 5 0 1 0 77 33333 1 999 5 33 5 66 66 66 6 5 8888 4 4 9999 0 1 66 5 77 66 66 4444 5 1 5 5 5 5 999 00 5 1 2 5 7 5 5 5 888888 1 77 5 5 5 5 5 888 88 5 5 5 33 5 33 5 2222 5 5 11 5 0 77 555 4 4 6 5 2 5 5 66 444444 5 55 77 5 55 5 888 2 88 5 11 5 11 777 5 888 000 5 66 5 5 1 5 5 5 3 5 8888888888888888 66 5 1111 5 5 4 4 0000 888 5 1 66 6666666 5 5 66 5 5 5 5 5 22 5 0 99 5 55
lowQualScore : . ....... ...... .. . . . . . . . . . . .. . ... ... . . .... . . . ... . . . . .. ..... . ... . .. . .. .. .. . . .... . . .... . . .. . .. .. .. .... . . . . . . ... .. . . . . . . . . ...... . .. . . . . . ... .. . . . .. . .. . .... . . .. . . .. ... . . . . . . . .. ...... . .. .. . .. . ... . .. . .. . .. ... . ... ... . .. . . . . . . . . ................ .. . .... . . . . .... ... . . .. ....... . . .. . . . . . .. . . .. . ..
lowQualScore : 7 6666666 555555 99 0 1 0 0 0 0 0 0 0 7 99 1 000 000 7 0 9999 7 7 7 666 7 7 0 1 11 44444 7 666 7 66 0 99 99 99 2 0 8888 4 4 1111 1 4 99 0 22 99 99 3333 7 4 7 7 7 7 666 77 7 4 5 0 0 0 0 0 111111 4 99 0 0 0 6 0 888 11 0 0 0 88 0 88 0 1111 0 0 99 0 0 00 666 4 4 5 0 5 0 0 99 111111 0 99 99 7 66 0 888 5 44 0 99 0 99 444 0 888 111 0 99 0 0 4 7 7 0 2 0 2222222222222222 11 0 0000 0 0 4 4 6666 888 0 4 99 2222222 0 0 99 0 0 0 0 0 66 0 1 22 0 11
consensus : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-TATATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
Reference ( family-2748 ) : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-T-TATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|1 : TTA-ATATACTAGTACTACCATA-----TTTTTG--TTA-T-ATTC-AAAATT-ATA-AA-TTGCTGCTT-C-CAACAGAAAA-GTTATCA-CTGTACATA---GCAATAA-C-TTCT-GCGCT-ATTAAA----G--ACAATACGATTTCAGTGCCAAACTGT-TAGTTTAATG---AAT-AGA----AATTGGAAG-TTTGAT--TACTCAA--C--AGTTCACTGACGCCA-AT---TCACA-CTTGGCACG-ATTAAACC-CCATAAAA--TACACGTATACA-CGACTTG---GAAT-AAAAGTTCC--GCTTCCAGCCACA-GA-CTC-G-CA-GTC-TTT-CACTTTGC--AACGATTC-GGTACGGATACCGCCGGACTTC-AAC-TAACTG-TAAAA-TT---------------------CGG-GAAACACCCATTT-CTATCTCAGACTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGC-TATATCCT--AAAA-C-CCTTC-ACG---AGGAAGTAA-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-AT-AG-CACAAAA--ATGTC-AAC-T-----CCA---AGAAAGTT-TAACCCG-AAACACCTCA-AA--TATTAACAAAATTA----GC-CGGC---TGGAGAAA-----------CAT----------AT-T----GG-CTCCCTG-GTT-ACCCATCTA-CCAGACTAACTGCTG-GATTTAAAAAAA--A------AAAAAGCA--CTTCCTGCTAGACA-A----CT--GG-ACAC-GTGGCCTCA-CGCTTGACGAACAAACGGCCACTGC-------------------AATGGGTTTCCTAAA--AATAGA-------CCT-A-CTGG--CCAAC-ACTCATATA-ACG-G-AACCCA---ACTAACATACAGCCAAG------ACA-ACAC-------AAAC-AGATCTAAAA-
gi|10 : gcgaaataacaaaacaaaatttattataataagagaagtataaaaacaaactatttcacacactcacccactctcaccaaggaaaagtaacatacatgtactttgaacacaatatcaaataacaagcaaaaattatcaactatgaattaatattaaaaaaaacttttcttgcagcgatgtaattcaatagcgataaagaacaacgttatttctataaccaaaagtaaagttccaatataacaaactcttaccgaaaatttaatgtttccactagaaaatattacTA-CCAG--CAACTGCTG-GAAATCTTCAAAAAC------A------A--CT--CTGCTGAACAGA---ACT-GAAGAAAC-GTGATCGCA-TGCTTG----ACAAACA-CAGCTACTCTGATA---ATTGAT-CAAACCTGTTTAGTATA--TATAGA-------TCT-A-CTGA--TCAAC-ACTCACACT-ACG-GCAACTTGT-TATGGGGATA-AACCAACTA-TATACAGCCAAA-CCACAAAAC-TAATCTAAAA-CAAAATTCTATTTAATCACA
gi|11 : aaagtaagaacgttttcacggactgGG-GAAACACCCA-TTTCTATCTCAGCCTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGC-TATATCCT--AAAA-C-CCTTC-ACG---AGGAAGT-A-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-ATACG-CACAAA
gi|12 : AAT-A-ACAAATG-CTTGTCATAGAA-CCTATACA-AATAACGA--T-----TTAGT-ACACG---CAAAACTATGTAAAAC-TCTTCACCATACAAA---TT-GAACCCA-AAACA--CCG-AAA-TATTTACATAATTAGCTTAC-CGGC---TGGAGAAA-A-GCAAAGTCCACACA-GCA--AAT-TATAAGG-CTT
gi|13 : C-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGTTCTGATA---ACTGAC-CAAACCAGTTTACTTTT--TATAGA-------ACT-A-CTGG--CAAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAAT
gi|14 : ---TCAC--CTTGGCACG-GCTAGACCTCCATACAAT--ACATATATATAGTGA--CGTC-AGAT-AAA--ACCCGGTCT----------------C-A-CAGGTC-TCT-AAC--AGTACAACAATAC-AGT-CTCACATCGCC-GACTGC-AAC-CAAATG-TACAA-TT-G----TG
gi|15 : TT-GCCA---AAACCGTT-TATCCGG-AAACA--TCG-AAA-TATTTACACAATTACCTTAC-CGAC---TGGAGAAA-A-CCAATGCCCACACA-ATA--AAT-TAAAAGG-------------------CTA-ACAGACTAA-TGCTG-GAATTCGTCAAA--C------A------A--CC
gi|18 : AAG-CTTGGC--TACTCAA--CGCAGTTTGTGAACACCA-CT---ACACA-CTTGACACA-ACCTGGCCTCCATACA----ACACGTA
gi|19 : CACTGCC-GACTTCCCAC-CAAATG-AAACA-CT-GCATGTGG-CATCT--ACCCCGG-GAAACGTCCA-TT-CTCTGTCACCCTcg
gi|2 : TTACATATA-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CCCTTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAAT-C-CCTTTT----CTCATAAAA-CC-G--TTAATTTG-TTT--AAGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTT-CTGACGCCA-CTCACTCACA-CTTGGCACG-ACCAGACCTCCGTACA-TG-ACACGC-------GA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-C--GA-C-CCG-CAGGCCCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTCCC-GACTTCTCACACAAATG-AAACA-CT------TGGCCCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCA-CCTCGCACGTG-GCACAATACCAGATG---GATA--TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAA---GGCCCGGG-T-TATCTT--AAAA-C-CCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATACCGCTAT-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TTAT-GCCA---AAACCGTT-ATACCCGAAAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAACA-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTT---GCT-ACCCATCTA-CCAGACTAAC--CTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCTAAAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAA--A-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|20 : aataactggcaaatgcctaaacacgacaatcaaagtcaaagtgtatataataaccacatatttgccaaatgtttcggctttttccacacttttgaaatattgttctttttacttaataag-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAaatacaag
gi|3 : TTA-AT-TA-----A-TACCATTAATTACTCACC--ATAATTAATT-AAG-TTGATA-CC-TTGCTGCTT-CATAACAGAAAAAGTT--CATCC---TCTAATCGCAATACACTTTTT-ATACT-ATAAAA-CCCGGTTTAATTTG-TT-AAAAGTTAAA-TGTATA--T-AATATTTAATGACACC-AAATTGAAAGCTTTGGTGTTAGTCAATCC--AGTTCGCTGACGCCATCA---TCACATCTTGCAACGTACCAGACCTCCGTACA---------TAT-CAGCGA--TGCCCGGAC-AAA--CTCC--TCTTCCAGCC-CC-GACC-C-GCCAGGCC-TCTCCAC--TGT--AACGATAC-GGTCCTCACACTG-C-GAAGTCCCAC-AAAATGAAAACATCTGG----TGGCCCTCCTAACCGCGGCGAAACGCCGA-CT-TTCTGTCATCCCTGCACGTGTCCACAATACCAGATGGGAAGTATCTCAGCCGTCGAGATCACCTTTTCTG--ATC--GCCGG--ATATTCTCACAATCACGGCCCGGGTT-TATCTTAAAAAA-C-CCCTTGGCAAT-CTGATAT-AGACAATTGACCTATCCTAAAATCCTGTCCACGATACAGC--TATTAATTAGTAACAAGTTACAAAA--ATGTCAAACTTAAT-G-CA---AAACCGGTATAACCCG-AAAGAC-TCG-AATGTATTTA
gi|4 : actgtaatgaagttcttttaaggattttgtgaggaagcagagaaaaagatgaaacgcagaataaacaatcaaaaatttatataataagataagtttgaaaaaacccaaacaacaaagtatttacactcagatttaactcactcactccacgcctagggcaactagcatacaaaataaagtatcagttattactaaatcaagaagtaactttctgcagaaattataacgcaacagtgcaataactggcaatgctaaacacacaatcaaagtcaaaagtgtatgatataacacatattgccaaatcgtttcggcttttccaactttgaaatattgttttttacttaataatgtTTA-ATATA-----A-TACCATA-----TTTCCG--ATA-TTATTT-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-ACTTTT-CTACT-ATAAAA-CCCG--TTAATTTG-TTTCAAGGT--------------CAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGA--AAA--CTCC--TCTTCCAGCC-CCTGA-C-C-G-CAGGCC-TCT-CAC---GCA-AACGATACGGGT-CTCACACTCCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAG----GGCCCGGG-T-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTGTCCA-GATAACGC--TATTA-ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AAT-TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTNA
gi|4 : agCCAAA--CCGGTTNA------A--TCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGTA-atctcctgctggacaatctaaaaaacgtggccgtataaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|4 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaATT--TATAGA-------ACT-AACTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAA---CAAACTAATA--AAAATCCAACTTCATCACAtaaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|5 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaccaaaccggttnaatctcctgctggacaatctaaaaaacgtggccgtataaTTA-ATATG-----A-TACCATA-----TTTCCG--ATA-TGATTT-AAG-TT-ATA-CC-TAGCTGCTT-C-TAACAGAAAAACTT--CATCT---GATA---GTAACAT-CCTTTC-GTACT-ATAAAA-CCCG--TTAATTTG-CTTCAATGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AGAATGAAAG-TTTGGT--TACTCAA--C--AGTTCACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACTCATACAACAA--TGCC-GGAC-AAA--CTCC--GCTTCCAGCC-ACAGA-CTC-G-CAAGCC-TCT-CAC--TGTA-AACGATAC-GGT-CTCACAATGCC-GACGTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCACCCTCGCACGTG-CCACAATACCAAATC---AGTAT-TCCCCCGTCG-GA-CACC-TTCCTG--A-C--GCTGGGAGTATTC-CACAAT---GGTCCGGG-TATATCCTA-AAAA-A-CCCTT-GCA---CTAAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----ATAGT-ACAAG-TACAAAT--ATGTAAAAC-TATT-GCAA---AAAACGTT-TAACCCG-AAACA--CCGAAA--TAT
gi|6 : cctactgtattgaagttcttttaaggattgtgtgaggaagcagaggaaaaagataaaacacaaaataaacaatcaaaatgtatttatataataagacaagtttggaaaaaaaccaaacaacaaagtatttacactcactcacttccagggcaaatagcatacaaaattaagtatcagttattgactaatgcttcaaaaaatactttcttgcagaaatataatacagttgtcaatcgcaggcaatgctaacaccacaatctaagtcaaagtgttaatatcatacactactgccggatagtttcggttttcagcttgaaaatattgcTTA-ATATA-------TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATAACC-TTGCTGCTTTC-TAACAGAAAAAGTT--TATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAAACCCG--TTAATTTG-TTTCAAGGTTAA--TGT-TA--TCAATAA--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CCTGA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACT-CC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACA-----GGGCCGGG-T-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAGCGC--T-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT--ATCCCG-AAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTATG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACC-GTTTACTATT--TAT-GA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|7 : TTA-ATATA-----A-TACAATA-----TTTTCATTATA-TGATTTTAAG-TT-ATA-CA-TTGCTGCTT-C-TAACAGAAAATGTT--CACAA---TGTA---GCAATAC-CATTTTCGT--T-ATTAAA-CCCG-----ATTT---TTCTGTGCTGAA-TGC--A--TTAATAT--AAT-ACACACAAATTGAAAG-TTTGGT--TACTCAA--T--AGTTCACTGACGCCA-CT---TCGCA-CTTGGCACG-TCTAGACCTCCGTACAATGCACATGTATACAGCGA--TGCC-GGATAAAA--CTCC--GCTTC
gi|8 : ttcacacatactcattctcaccaagggcaactagcatacataataatgtatcaaaattgttgacaatgaattgaagaaataactttcttgcagcgatattttccagtagtcaatataacaggcaatgctaacaccacaatcaaagtcagggtgtcaacatatcacaatattgcccaatacatgtagtttcggttttcaacttgaaaacattacCACGTG-CCACAATACCAGATG---AGTAT-CCCCCCGTCG-GA-CACC-TTTCTA--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-T-TATCCT--AAAACC-CCCTT-GCACGGCTGGAAC-A-A
gi|8 : AACCCCCTTGCACGGC---TGGAACAA-ATCCACTGCTCACGCA-GTA--AAT-TAAAAGG-CTCCCTG-GCT-ACCCATCTA-CCAGACTAACTACTG-AAATTCGCCAAA--C------A------A--CTTCCTGCTGGACA-A---TCT-AAA-ACAC-GCGGCCACATCCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGAAGTTAGAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAATCCAACTTCATCACAatccactgctcacgcagtaaattaaaaggctccctggctacccatctaccagactaactactgaaattcgccaaacaacttcctgctggacaatctaaaacacgcggccacatcccttgacaaacggccgctgctctgataactgaccaaaccggtttactatttatagaagttagaactactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacgccacaaaaccaaactaagataaaatccaacttcatcaca
gi|9 : cacgtgccacaataccagatgagtatccccccgtcggacacctttctaacgctgggagtattccacaatggcccgggttatcctaaATCTCTTTAC-CGGCATCTGGAAAAA-C-TCAATGCAGACACACGTATTAATGTAAAAGGGCTTTCTGAGCTGACCCACTTAACCAGACTAAC--CTGTGAATTCGCCAAA--A------A------AATCTCCCTGCTGAGCA-AAATCCT-AAA-AGAGAGAGGCCGCA-CCCT-G----A-AAACGGCCGCTGCTTGGATATACACTGACACAAACCGGTTTACTATTAGTATAGA-------ACTGA-CTAGGCCCAACCACTCACACTCACGCGCAACCTGTGTACGGGCATA-AACCAATTATTATACATACACGCCCACAAAACACAAACTAAAATTAAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCTGTAATGAAGTTCTTTTTAGGATTTTGTGTAGGAAGCAGAGAAAAAGATAAATCGCAGAATAAACAATCAAAATTTACATTAATATCAAAACAAATTTGA
Unaligned ( gi|17 ): CCGCAGAATAAACAGAAACAAAATTTATTTTAATAGTACGAAAAACTATTATTTGCACACACTCACTCTCACCAAGAAAAACTAACA
Unaligned ( gi|21 ): TCAATAGTCAATAAAAGGCAATGTTAACACCACAATCAACATTAACGTGTCA
Alignments
lowQualScore : 1111111 111111 111 111 22222 11 1111 222222 11 1 111111 1 11 11 1111 1 11 1 111 222222 11 22 111 1111111111111111 1111 1111 1111111
lowQualScore : 5 4444444 333333 66 5 3 5 5 5 5 5 5 5 1 77 0 000 000 5 3 8888 5 5 0 999 5 0 1 0 77 33333 1 999 5 33 5 66 66 66 6 5 8888 4 4 9999 0 1 66 5 77 66 66 0 5 111111 5 5 5 999 00 5 1 2 5 7 5 5 5 888888 1 77 5 5 5 5 5 888 88 5 5 5 33 5 33 5 2222 8 11 5 0 77 555 4 4 6 5 2 5 5 66 444444 5 55 77 5 55 5 888 2 88 5 11 5 11 777 5 888 000 5 66 5 5 1 5 5 5 3 5 8888888888888888 66 5 1111 5 5 4 4 0000 888 5 1 66 6666666 5 5 66 5 5 5 5 5 22 5 0 99 5 55
lowQualScore : . ....... ...... .. . . . . . . . . . . .. . ... ... . . .... . . . ... . . . . .. ..... . ... . .. . .. .. .. . . .... . . .... . . .. . .. .. .. . . ...... . . . ... .. . . . . . . . . ...... . .. . . . . . ... .. . . . .. . .. . .... . .. . . .. ... . . . . . . . .. ...... . .. .. . .. . ... . .. . .. . .. ... . ... ... . .. . . . . . . . . ................ .. . .... . . . . .... ... . . .. ....... . . .. . . . . . .. . . .. . ..
lowQualScore : 7 6666666 555555 99 0 1 0 0 0 0 0 0 0 7 99 1 000 000 7 0 9999 7 7 7 666 7 7 0 1 11 44444 7 666 7 66 0 99 99 99 2 0 8888 4 4 1111 1 4 99 0 22 99 99 7 7 666666 7 7 7 666 77 7 4 5 0 0 0 0 0 111111 4 99 0 0 0 6 0 888 11 0 0 0 88 0 88 0 1111 8 99 0 0 00 666 4 4 5 0 5 0 0 99 111111 0 99 99 7 66 0 888 5 44 0 99 0 99 444 0 888 111 0 99 0 0 4 7 7 0 2 0 2222222222222222 11 0 0000 0 0 4 4 6666 888 0 4 99 2222222 0 0 99 0 0 0 0 0 66 0 1 22 0 11
consensus : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-CG-CAGG-CCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGT-TATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
Reference ( family-2748 ) : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-CG-CAGG-CCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGTATATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|1 : TTA-ATATACTAGTACTACCATA-----TTTTTG--TTA-T-ATTC-AAAATT-ATA-AA-TTGCTGCTT-C-CAACAGAAAA-GTTATCA-CTGTACATA---GCAATAA-C-TTCT-GCGCT-ATTAAA----G--ACAATACGATTTCAGTGCCAAACTGT-TAGTTTAATG---AAT-AGA----AATTGGAAG-TTTGAT--TACTCAA--C--AGTTCACTGACGCCA-AT---TCACA-CTTGGCACG-ATTAAACC-CCATAAAA--TACACGTATACA-CGACTTG---GAAT-AAAAGTTCC--GCTTCCAGCCACA-GA-CTCG-CA-G-TCTTT-CACTTTGC--AACGATTC-GGTACGGATACCGCCGGACTTC-AAC-TAACTG-TAAAA-TT---------------------CGG-GAAACACCCATTT-CTATCTCAGACTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGCTATATCCT--AAAA-C-CCTTC-ACG---AGGAAGTAA-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-AT-AG-CACAAAA--ATGTC-AAC-T-----CCA---AGAAAGTT-TAACCCG-AAACACCTCA-AA--TATTAACAAAATTA----GC-CGGC---TGGAGAAA-----------CAT----------AT-T----GG-CTCCCTG-GTT-ACCCATCTA-CCAGACTAACTGCTG-GATTTAAAAAAA--A------AAAAAGCA--CTTCCTGCTAGACA-A----CT--GG-ACAC-GTGGCCTCA-CGCTTGACGAACAAACGGCCACTGC-------------------AATGGGTTTCCTAAA--AATAGA-------CCT-A-CTGG--CCAAC-ACTCATATA-ACG-G-AACCCA---ACTAACATACAGCCAAG------ACA-ACAC-------AAAC-AGATCTAAAA-
gi|10 : gcgaaataacaaaacaaaatttattataataagagaagtataaaaacaaactatttcacacactcacccactctcaccaaggaaaagtaacatacatgtactttgaacacaatatcaaataacaagcaaaaattatcaactatgaattaatattaaaaaaaacttttcttgcagcgatgtaattcaatagcgataaagaacaacgttatttctataaccaaaagtaaagttccaatataacaaactcttaccgaaaatttaatgtttccactagaaaatattacTA-CCAG--CAACTGCTG-GAAATCTTCAAAAAC------A------A--CT--CTGCTGAACAGA---ACT-GAAGAAAC-GTGATCGCA-TGCTTG----ACAAACA-CAGCTACTCTGATA---ATTGAT-CAAACCTGTTTAGTATA--TATAGA-------TCT-A-CTGA--TCAAC-ACTCACACT-ACG-GCAACTTGT-TATGGGGATA-AACCAACTA-TATACAGCCAAA-CCACAAAAC-TAATCTAAAA-CAAAATTCTATTTAATCACA
gi|11 : aaagtaagaacgttttcacggactgGG-GAAACACCCA-TTTCTATCTCAGCCTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGCTATATCCT--AAAA-C-CCTTC-ACG---AGGAAGT-A-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-ATACG-CACAAA
gi|12 : AAT-A-ACAAATG-CTTGTCATAGAA-CCTATACA-AATAACGA--T-----TTAGT-ACACG---CAAAACTATGTAAAAC-TCTTCACCATACAAA---TT-GAACCCA-AAACA--CCG-AAA-TATTTACATAATTAGCTTAC-CGGC---TGGAGAAA-A-GCAAAGTCCACACA-GCA--AAT-TATAAGG-CTT
gi|13 : C-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGTTCTGATA---ACTGAC-CAAACCAGTTTACTTTT--TATAGA-------ACT-A-CTGG--CAAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAAT
gi|14 : ---TCAC--CTTGGCACG-GCTAGACCTCCATACAAT--ACATATATATAGTGA--CGTC-AGAT-AAA--ACCCGGTCT----------------CA-CAGG-TCTCT-AAC--AGTACAACAATAC-AGT-CTCACATCGCC-GACTGC-AAC-CAAATG-TACAA-TT-G----TG
gi|15 : TT-GCCA---AAACCGTT-TATCCGG-AAACA--TCG-AAA-TATTTACACAATTACCTTAC-CGAC---TGGAGAAA-A-CCAATGCCCACACA-ATA--AAT-TAAAAGG-------------------CTA-ACAGACTAA-TGCTG-GAATTCGTCAAA--C------A------A--CC
gi|18 : AAG-CTTGGC--TACTCAA--CGCAGTTTGTGAACACCA-CT---ACACA-CTTGACACA-ACCTGGCCTCCATACA----ACACGTA
gi|19 : CACTGCC-GACTTCCCAC-CAAATG-AAACA-CT-GCATGTGG-CATCT--ACCCCGG-GAAACGTCCA-TT-CTCTGTCACCCTcg
gi|2 : TTACATATA-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CCCTTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAAT-C-CCTTTT----CTCATAAAA-CC-G--TTAATTTG-TTT--AAGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTT-CTGACGCCA-CTCACTCACA-CTTGGCACG-ACCAGACCTCCGTACA-TG-ACACGC-------GA--TGCC-GGAC-AAA--CTCC--TCTTCCAG-C-CC-GACC-CG-CAGGCCCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTCCC-GACTTCTCACACAAATG-AAACA-CT------TGGCCCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCA-CCTCGCACGTG-GCACAATACCAGATG---GATA--TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAA---GGCCCGGGT-TATCTT--AAAA-C-CCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATACCGCTAT-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TTAT-GCCA---AAACCGTT-ATACCCGAAAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAACA-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTT---GCT-ACCCATCTA-CCAGACTAAC--CTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCTAAAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAA--A-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|20 : aataactggcaaatgcctaaacacgacaatcaaagtcaaagtgtatataataaccacatatttgccaaatgtttcggctttttccacacttttgaaatattgttctttttacttaataag-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAaatacaag
gi|3 : TTA-AT-TA-----A-TACCATTAATTACTCACC--ATAATTAATT-AAG-TTGATA-CC-TTGCTGCTT-CATAACAGAAAAAGTT--CATCC---TCTAATCGCAATACACTTTTT-ATACT-ATAAAA-CCCGGTTTAATTTG-TT-AAAAGTTAAA-TGTATA--T-AATATTTAATGACACC-AAATTGAAAGCTTTGGTGTTAGTCAATCC--AGTTCGCTGACGCCATCA---TCACATCTTGCAACGTACCAGACCTCCGTACA---------TAT-CAGCGA--TGCCCGGAC-AAA--CTCC--TCTTCCAGCC-CC-GACC-CGCCAGG-CCTCTCCAC--TGT--AACGATAC-GGTCCTCACACTG-C-GAAGTCCCAC-AAAATGAAAACATCTGG----TGGCCCTCCTAACCGCGGCGAAACGCCGA-CT-TTCTGTCATCCCTGCACGTGTCCACAATACCAGATGGGAAGTATCTCAGCCGTCGAGATCACCTTTTCTG--ATC--GCCGG--ATATTCTCACAATCACGGCCCGGGTTTATCTTAAAAAA-C-CCCTTGGCAAT-CTGATAT-AGACAATTGACCTATCCTAAAATCCTGTCCACGATACAGC--TATTAATTAGTAACAAGTTACAAAA--ATGTCAAACTTAAT-G-CA---AAACCGGTATAACCCG-AAAGAC-TCG-AATGTATTTA
gi|4 : actgtaatgaagttcttttaaggattttgtgaggaagcagagaaaaagatgaaacgcagaataaacaatcaaaaatttatataataagataagtttgaaaaaacccaaacaacaaagtatttacactcagatttaactcactcactccacgcctagggcaactagcatacaaaataaagtatcagttattactaaatcaagaagtaactttctgcagaaattataacgcaacagtgcaataactggcaatgctaaacacacaatcaaagtcaaaagtgtatgatataacacatattgccaaatcgtttcggcttttccaactttgaaatattgttttttacttaataatgtTTA-ATATA-----A-TACCATA-----TTTCCG--ATA-TTATTT-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-ACTTTT-CTACT-ATAAAA-CCCG--TTAATTTG-TTTCAAGGT--------------CAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGA--AAA--CTCC--TCTTCCAGCC-CCTGA-C-CG-CAGG-CCTCT-CAC---GCA-AACGATACGGGT-CTCACACTCCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAG----GGCCCGGGT-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTGTCCA-GATAACGC--TATTA-ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AAT-TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTNA
gi|4 : agCCAAA--CCGGTTNA------A--TCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGTA-atctcctgctggacaatctaaaaaacgtggccgtataaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|4 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaATT--TATAGA-------ACT-AACTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAA---CAAACTAATA--AAAATCCAACTTCATCACAtaaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|5 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaccaaaccggttnaatctcctgctggacaatctaaaaaacgtggccgtataaTTA-ATATG-----A-TACCATA-----TTTCCG--ATA-TGATTT-AAG-TT-ATA-CC-TAGCTGCTT-C-TAACAGAAAAACTT--CATCT---GATA---GTAACAT-CCTTTC-GTACT-ATAAAA-CCCG--TTAATTTG-CTTCAATGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AGAATGAAAG-TTTGGT--TACTCAA--C--AGTTCACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACTCATACAACAA--TGCC-GGAC-AAA--CTCC--GCTTCCAGCC-ACAGA-CTCG-CAAG-CCTCT-CAC--TGTA-AACGATAC-GGT-CTCACAATGCC-GACGTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCACCCTCGCACGTG-CCACAATACCAAATC---AGTAT-TCCCCCGTCG-GA-CACC-TTCCTG--A-C--GCTGGGAGTATTC-CACAAT---GGTCCGGGTATATCCTA-AAAA-A-CCCTT-GCA---CTAAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----ATAGT-ACAAG-TACAAAT--ATGTAAAAC-TATT-GCAA---AAAACGTT-TAACCCG-AAACA--CCGAAA--TAT
gi|6 : cctactgtattgaagttcttttaaggattgtgtgaggaagcagaggaaaaagataaaacacaaaataaacaatcaaaatgtatttatataataagacaagtttggaaaaaaaccaaacaacaaagtatttacactcactcacttccagggcaaatagcatacaaaattaagtatcagttattgactaatgcttcaaaaaatactttcttgcagaaatataatacagttgtcaatcgcaggcaatgctaacaccacaatctaagtcaaagtgttaatatcatacactactgccggatagtttcggttttcagcttgaaaatattgcTTA-ATATA-------TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATAACC-TTGCTGCTTTC-TAACAGAAAAAGTT--TATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAAACCCG--TTAATTTG-TTTCAAGGTTAA--TGT-TA--TCAATAA--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CCTGA-C-CG-CAGG-CCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACT-CC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACA-----GGGCCGGGT-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAGCGC--T-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT--ATCCCG-AAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTATG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACC-GTTTACTATT--TAT-GA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|7 : TTA-ATATA-----A-TACAATA-----TTTTCATTATA-TGATTTTAAG-TT-ATA-CA-TTGCTGCTT-C-TAACAGAAAATGTT--CACAA---TGTA---GCAATAC-CATTTTCGT--T-ATTAAA-CCCG-----ATTT---TTCTGTGCTGAA-TGC--A--TTAATAT--AAT-ACACACAAATTGAAAG-TTTGGT--TACTCAA--T--AGTTCACTGACGCCA-CT---TCGCA-CTTGGCACG-TCTAGACCTCCGTACAATGCACATGTATACAGCGA--TGCC-GGATAAAA--CTCC--GCTTC
gi|8 : ttcacacatactcattctcaccaagggcaactagcatacataataatgtatcaaaattgttgacaatgaattgaagaaataactttcttgcagcgatattttccagtagtcaatataacaggcaatgctaacaccacaatcaaagtcagggtgtcaacatatcacaatattgcccaatacatgtagtttcggttttcaacttgaaaacattacCACGTG-CCACAATACCAGATG---AGTAT-CCCCCCGTCG-GA-CACC-TTTCTA--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGT-TATCCT--AAAACC-CCCTT-GCACGGCTGGAAC-A-A
gi|8 : AACCCCCTTGCACGGC---TGGAACAA-ATCCACTGCTCACGCA-GTA--AAT-TAAAAGG-CTCCCTG-GCT-ACCCATCTA-CCAGACTAACTACTG-AAATTCGCCAAA--C------A------A--CTTCCTGCTGGACA-A---TCT-AAA-ACAC-GCGGCCACATCCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGAAGTTAGAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAATCCAACTTCATCACAatccactgctcacgcagtaaattaaaaggctccctggctacccatctaccagactaactactgaaattcgccaaacaacttcctgctggacaatctaaaacacgcggccacatcccttgacaaacggccgctgctctgataactgaccaaaccggtttactatttatagaagttagaactactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacgccacaaaaccaaactaagataaaatccaacttcatcaca
gi|9 : cacgtgccacaataccagatgagtatccccccgtcggacacctttctaacgctgggagtattccacaatggcccgggttatcctaaATCTCTTTAC-CGGCATCTGGAAAAA-C-TCAATGCAGACACACGTATTAATGTAAAAGGGCTTTCTGAGCTGACCCACTTAACCAGACTAAC--CTGTGAATTCGCCAAA--A------A------AATCTCCCTGCTGAGCA-AAATCCT-AAA-AGAGAGAGGCCGCA-CCCT-G----A-AAACGGCCGCTGCTTGGATATACACTGACACAAACCGGTTTACTATTAGTATAGA-------ACTGA-CTAGGCCCAACCACTCACACTCACGCGCAACCTGTGTACGGGCATA-AACCAATTATTATACATACACGCCCACAAAACACAAACTAAAATTAAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCTGTAATGAAGTTCTTTTTAGGATTTTGTGTAGGAAGCAGAGAAAAAGATAAATCGCAGAATAAACAATCAAAATTTACATTAATATCAAAACAAATTTGA
Unaligned ( gi|17 ): CCGCAGAATAAACAGAAACAAAATTTATTTTAATAGTACGAAAAACTATTATTTGCACACACTCACTCTCACCAAGAAAAACTAACA
Unaligned ( gi|21 ): TCAATAGTCAATAAAAGGCAATGTTAACACCACAATCAACATTAACGTGTCA
Alignments
lowQualScore : 1111111 111111 111 111 22222 11 1111 2222 1 11 1 111111 1 11 11 1111 1 11 1 111 222222 11 22 111 1111111111111111 1111 1111 1111111
lowQualScore : 5 4444444 333333 66 5 3 5 5 5 5 5 5 5 1 77 0 000 000 5 3 8888 5 5 0 999 5 0 1 0 77 33333 1 999 5 33 5 66 66 66 6 5 8888 4 4 9999 0 1 66 5 77 66 66 4444 5 1 5 5 5 5 999 00 5 1 2 5 7 5 5 5 888888 1 77 5 5 5 5 5 888 88 5 5 5 33 5 33 5 2222 5 5 11 5 0 77 555 4 4 6 5 2 5 5 66 444444 5 55 77 5 55 5 888 2 88 5 11 5 11 777 5 888 000 5 66 5 5 1 5 5 5 3 5 8888888888888888 66 5 1111 5 5 4 4 0000 888 5 1 66 6666666 5 5 66 5 5 5 5 5 22 5 0 99 5 55
lowQualScore : . ....... ...... .. . . . . . . . . . . .. . ... ... . . .... . . . ... . . . . .. ..... . ... . .. . .. .. .. . . .... . . .... . . .. . .. .. .. .... . . . . . . ... .. . . . . . . . . ...... . .. . . . . . ... .. . . . .. . .. . .... . . .. . . .. ... . . . . . . . .. ...... . .. .. . .. . ... . .. . .. . .. ... . ... ... . .. . . . . . . . . ................ .. . .... . . . . .... ... . . .. ....... . . .. . . . . . .. . . .. . ..
lowQualScore : 7 6666666 555555 99 0 1 0 0 0 0 0 0 0 7 99 1 000 000 7 0 9999 7 7 7 666 7 7 0 1 11 44444 7 666 7 66 0 99 99 99 2 0 8888 4 4 1111 1 4 99 0 22 99 99 3333 7 4 7 7 7 7 666 77 7 4 5 0 0 0 0 0 111111 4 99 0 0 0 6 0 888 11 0 0 0 88 0 88 0 1111 0 0 99 0 0 00 666 4 4 5 0 5 0 0 99 111111 0 99 99 7 66 0 888 5 44 0 99 0 99 444 0 888 111 0 99 0 0 4 7 7 0 2 0 2222222222222222 11 0 0000 0 0 4 4 6666 888 0 4 99 2222222 0 0 99 0 0 0 0 0 66 0 1 22 0 11
consensus : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-TATATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
Reference ( family-2748 ) : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-T-TATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|1 : TTA-ATATACTAGTACTACCATA-----TTTTTG--TTA-T-ATTC-AAAATT-ATA-AA-TTGCTGCTT-C-CAACAGAAAA-GTTATCA-CTGTACATA---GCAATAA-C-TTCT-GCGCT-ATTAAA----G--ACAATACGATTTCAGTGCCAAACTGT-TAGTTTAATG---AAT-AGA----AATTGGAAG-TTTGAT--TACTCAA--C--AGTTCACTGACGCCA-AT---TCACA-CTTGGCACG-ATTAAACC-CCATAAAA--TACACGTATACA-CGACTTG---GAAT-AAAAGTTCC--GCTTCCAGCCACA-GA-CTC-G-CA-GTC-TTT-CACTTTGC--AACGATTC-GGTACGGATACCGCCGGACTTC-AAC-TAACTG-TAAAA-TT---------------------CGG-GAAACACCCATTT-CTATCTCAGACTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGC-TATATCCT--AAAA-C-CCTTC-ACG---AGGAAGTAA-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-AT-AG-CACAAAA--ATGTC-AAC-T-----CCA---AGAAAGTT-TAACCCG-AAACACCTCA-AA--TATTAACAAAATTA----GC-CGGC---TGGAGAAA-----------CAT----------AT-T----GG-CTCCCTG-GTT-ACCCATCTA-CCAGACTAACTGCTG-GATTTAAAAAAA--A------AAAAAGCA--CTTCCTGCTAGACA-A----CT--GG-ACAC-GTGGCCTCA-CGCTTGACGAACAAACGGCCACTGC-------------------AATGGGTTTCCTAAA--AATAGA-------CCT-A-CTGG--CCAAC-ACTCATATA-ACG-G-AACCCA---ACTAACATACAGCCAAG------ACA-ACAC-------AAAC-AGATCTAAAA-
gi|10 : gcgaaataacaaaacaaaatttattataataagagaagtataaaaacaaactatttcacacactcacccactctcaccaaggaaaagtaacatacatgtactttgaacacaatatcaaataacaagcaaaaattatcaactatgaattaatattaaaaaaaacttttcttgcagcgatgtaattcaatagcgataaagaacaacgttatttctataaccaaaagtaaagttccaatataacaaactcttaccgaaaatttaatgtttccactagaaaatattacTA-CCAG--CAACTGCTG-GAAATCTTCAAAAAC------A------A--CT--CTGCTGAACAGA---ACT-GAAGAAAC-GTGATCGCA-TGCTTG----ACAAACA-CAGCTACTCTGATA---ATTGAT-CAAACCTGTTTAGTATA--TATAGA-------TCT-A-CTGA--TCAAC-ACTCACACT-ACG-GCAACTTGT-TATGGGGATA-AACCAACTA-TATACAGCCAAA-CCACAAAAC-TAATCTAAAA-CAAAATTCTATTTAATCACA
gi|11 : aaagtaagaacgttttcacggactgGG-GAAACACCCA-TTTCTATCTCAGCCTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGC-TATATCCT--AAAA-C-CCTTC-ACG---AGGAAGT-A-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-ATACG-CACAAA
gi|12 : AAT-A-ACAAATG-CTTGTCATAGAA-CCTATACA-AATAACGA--T-----TTAGT-ACACG---CAAAACTATGTAAAAC-TCTTCACCATACAAA---TT-GAACCCA-AAACA--CCG-AAA-TATTTACATAATTAGCTTAC-CGGC---TGGAGAAA-A-GCAAAGTCCACACA-GCA--AAT-TATAAGG-CTT
gi|13 : C-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGTTCTGATA---ACTGAC-CAAACCAGTTTACTTTT--TATAGA-------ACT-A-CTGG--CAAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAAT
gi|14 : ---TCAC--CTTGGCACG-GCTAGACCTCCATACAAT--ACATATATATAGTGA--CGTC-AGAT-AAA--ACCCGGTCT----------------C-A-CAGGTC-TCT-AAC--AGTACAACAATAC-AGT-CTCACATCGCC-GACTGC-AAC-CAAATG-TACAA-TT-G----TG
gi|15 : TT-GCCA---AAACCGTT-TATCCGG-AAACA--TCG-AAA-TATTTACACAATTACCTTAC-CGAC---TGGAGAAA-A-CCAATGCCCACACA-ATA--AAT-TAAAAGG-------------------CTA-ACAGACTAA-TGCTG-GAATTCGTCAAA--C------A------A--CC
gi|18 : AAG-CTTGGC--TACTCAA--CGCAGTTTGTGAACACCA-CT---ACACA-CTTGACACA-ACCTGGCCTCCATACA----ACACGTA
gi|19 : CACTGCC-GACTTCCCAC-CAAATG-AAACA-CT-GCATGTGG-CATCT--ACCCCGG-GAAACGTCCA-TT-CTCTGTCACCCTcg
gi|2 : TTACATATA-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CCCTTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAAT-C-CCTTTT----CTCATAAAA-CC-G--TTAATTTG-TTT--AAGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTT-CTGACGCCA-CTCACTCACA-CTTGGCACG-ACCAGACCTCCGTACA-TG-ACACGC-------GA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-C--GA-C-CCG-CAGGCCCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTCCC-GACTTCTCACACAAATG-AAACA-CT------TGGCCCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCA-CCTCGCACGTG-GCACAATACCAGATG---GATA--TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAA---GGCCCGGG-T-TATCTT--AAAA-C-CCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATACCGCTAT-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TTAT-GCCA---AAACCGTT-ATACCCGAAAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAACA-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTT---GCT-ACCCATCTA-CCAGACTAAC--CTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCTAAAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAA--A-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|20 : aataactggcaaatgcctaaacacgacaatcaaagtcaaagtgtatataataaccacatatttgccaaatgtttcggctttttccacacttttgaaatattgttctttttacttaataag-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAaatacaag
gi|3 : TTA-AT-TA-----A-TACCATTAATTACTCACC--ATAATTAATT-AAG-TTGATA-CC-TTGCTGCTT-CATAACAGAAAAAGTT--CATCC---TCTAATCGCAATACACTTTTT-ATACT-ATAAAA-CCCGGTTTAATTTG-TT-AAAAGTTAAA-TGTATA--T-AATATTTAATGACACC-AAATTGAAAGCTTTGGTGTTAGTCAATCC--AGTTCGCTGACGCCATCA---TCACATCTTGCAACGTACCAGACCTCCGTACA---------TAT-CAGCGA--TGCCCGGAC-AAA--CTCC--TCTTCCAGCC-CC-GACC-C-GCCAGGCC-TCTCCAC--TGT--AACGATAC-GGTCCTCACACTG-C-GAAGTCCCAC-AAAATGAAAACATCTGG----TGGCCCTCCTAACCGCGGCGAAACGCCGA-CT-TTCTGTCATCCCTGCACGTGTCCACAATACCAGATGGGAAGTATCTCAGCCGTCGAGATCACCTTTTCTG--ATC--GCCGG--ATATTCTCACAATCACGGCCCGGGTT-TATCTTAAAAAA-C-CCCTTGGCAAT-CTGATAT-AGACAATTGACCTATCCTAAAATCCTGTCCACGATACAGC--TATTAATTAGTAACAAGTTACAAAA--ATGTCAAACTTAAT-G-CA---AAACCGGTATAACCCG-AAAGAC-TCG-AATGTATTTA
gi|4 : actgtaatgaagttcttttaaggattttgtgaggaagcagagaaaaagatgaaacgcagaataaacaatcaaaaatttatataataagataagtttgaaaaaacccaaacaacaaagtatttacactcagatttaactcactcactccacgcctagggcaactagcatacaaaataaagtatcagttattactaaatcaagaagtaactttctgcagaaattataacgcaacagtgcaataactggcaatgctaaacacacaatcaaagtcaaaagtgtatgatataacacatattgccaaatcgtttcggcttttccaactttgaaatattgttttttacttaataatgtTTA-ATATA-----A-TACCATA-----TTTCCG--ATA-TTATTT-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-ACTTTT-CTACT-ATAAAA-CCCG--TTAATTTG-TTTCAAGGT--------------CAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGA--AAA--CTCC--TCTTCCAGCC-CCTGA-C-C-G-CAGGCC-TCT-CAC---GCA-AACGATACGGGT-CTCACACTCCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAG----GGCCCGGG-T-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTGTCCA-GATAACGC--TATTA-ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AAT-TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTNA
gi|4 : agCCAAA--CCGGTTNA------A--TCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGTA-atctcctgctggacaatctaaaaaacgtggccgtataaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|4 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaATT--TATAGA-------ACT-AACTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAA---CAAACTAATA--AAAATCCAACTTCATCACAtaaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|5 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaccaaaccggttnaatctcctgctggacaatctaaaaaacgtggccgtataaTTA-ATATG-----A-TACCATA-----TTTCCG--ATA-TGATTT-AAG-TT-ATA-CC-TAGCTGCTT-C-TAACAGAAAAACTT--CATCT---GATA---GTAACAT-CCTTTC-GTACT-ATAAAA-CCCG--TTAATTTG-CTTCAATGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AGAATGAAAG-TTTGGT--TACTCAA--C--AGTTCACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACTCATACAACAA--TGCC-GGAC-AAA--CTCC--GCTTCCAGCC-ACAGA-CTC-G-CAAGCC-TCT-CAC--TGTA-AACGATAC-GGT-CTCACAATGCC-GACGTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCACCCTCGCACGTG-CCACAATACCAAATC---AGTAT-TCCCCCGTCG-GA-CACC-TTCCTG--A-C--GCTGGGAGTATTC-CACAAT---GGTCCGGG-TATATCCTA-AAAA-A-CCCTT-GCA---CTAAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----ATAGT-ACAAG-TACAAAT--ATGTAAAAC-TATT-GCAA---AAAACGTT-TAACCCG-AAACA--CCGAAA--TAT
gi|6 : cctactgtattgaagttcttttaaggattgtgtgaggaagcagaggaaaaagataaaacacaaaataaacaatcaaaatgtatttatataataagacaagtttggaaaaaaaccaaacaacaaagtatttacactcactcacttccagggcaaatagcatacaaaattaagtatcagttattgactaatgcttcaaaaaatactttcttgcagaaatataatacagttgtcaatcgcaggcaatgctaacaccacaatctaagtcaaagtgttaatatcatacactactgccggatagtttcggttttcagcttgaaaatattgcTTA-ATATA-------TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATAACC-TTGCTGCTTTC-TAACAGAAAAAGTT--TATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAAACCCG--TTAATTTG-TTTCAAGGTTAA--TGT-TA--TCAATAA--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CCTGA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACT-CC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACA-----GGGCCGGG-T-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAGCGC--T-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT--ATCCCG-AAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTATG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACC-GTTTACTATT--TAT-GA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|7 : TTA-ATATA-----A-TACAATA-----TTTTCATTATA-TGATTTTAAG-TT-ATA-CA-TTGCTGCTT-C-TAACAGAAAATGTT--CACAA---TGTA---GCAATAC-CATTTTCGT--T-ATTAAA-CCCG-----ATTT---TTCTGTGCTGAA-TGC--A--TTAATAT--AAT-ACACACAAATTGAAAG-TTTGGT--TACTCAA--T--AGTTCACTGACGCCA-CT---TCGCA-CTTGGCACG-TCTAGACCTCCGTACAATGCACATGTATACAGCGA--TGCC-GGATAAAA--CTCC--GCTTC
gi|8 : ttcacacatactcattctcaccaagggcaactagcatacataataatgtatcaaaattgttgacaatgaattgaagaaataactttcttgcagcgatattttccagtagtcaatataacaggcaatgctaacaccacaatcaaagtcagggtgtcaacatatcacaatattgcccaatacatgtagtttcggttttcaacttgaaaacattacCACGTG-CCACAATACCAGATG---AGTAT-CCCCCCGTCG-GA-CACC-TTTCTA--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-T-TATCCT--AAAACC-CCCTT-GCACGGCTGGAAC-A-A
gi|8 : AACCCCCTTGCACGGC---TGGAACAA-ATCCACTGCTCACGCA-GTA--AAT-TAAAAGG-CTCCCTG-GCT-ACCCATCTA-CCAGACTAACTACTG-AAATTCGCCAAA--C------A------A--CTTCCTGCTGGACA-A---TCT-AAA-ACAC-GCGGCCACATCCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGAAGTTAGAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAATCCAACTTCATCACAatccactgctcacgcagtaaattaaaaggctccctggctacccatctaccagactaactactgaaattcgccaaacaacttcctgctggacaatctaaaacacgcggccacatcccttgacaaacggccgctgctctgataactgaccaaaccggtttactatttatagaagttagaactactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacgccacaaaaccaaactaagataaaatccaacttcatcaca
gi|9 : cacgtgccacaataccagatgagtatccccccgtcggacacctttctaacgctgggagtattccacaatggcccgggttatcctaaATCTCTTTAC-CGGCATCTGGAAAAA-C-TCAATGCAGACACACGTATTAATGTAAAAGGGCTTTCTGAGCTGACCCACTTAACCAGACTAAC--CTGTGAATTCGCCAAA--A------A------AATCTCCCTGCTGAGCA-AAATCCT-AAA-AGAGAGAGGCCGCA-CCCT-G----A-AAACGGCCGCTGCTTGGATATACACTGACACAAACCGGTTTACTATTAGTATAGA-------ACTGA-CTAGGCCCAACCACTCACACTCACGCGCAACCTGTGTACGGGCATA-AACCAATTATTATACATACACGCCCACAAAACACAAACTAAAATTAAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCTGTAATGAAGTTCTTTTTAGGATTTTGTGTAGGAAGCAGAGAAAAAGATAAATCGCAGAATAAACAATCAAAATTTACATTAATATCAAAACAAATTTGA
Unaligned ( gi|17 ): CCGCAGAATAAACAGAAACAAAATTTATTTTAATAGTACGAAAAACTATTATTTGCACACACTCACTCTCACCAAGAAAAACTAACA
Unaligned ( gi|21 ): TCAATAGTCAATAAAAGGCAATGTTAACACCACAATCAACATTAACGTGTCA
Alignments
lowQualScore : 1111111 111111 111 111 22222 11 1111 222222 11 1 111111 1 11 11 1111 1 11 1 111 222222 11 22 111 1111111111111111 1111 1111 1111111
lowQualScore : 5 4444444 333333 66 5 3 5 5 5 5 5 5 5 1 77 0 000 000 5 3 8888 5 5 0 999 5 0 1 0 77 33333 1 999 5 33 5 66 66 66 6 5 8888 4 4 9999 0 1 66 5 77 66 66 0 5 111111 5 5 5 999 00 5 1 2 5 7 5 5 5 888888 1 77 5 5 5 5 5 888 88 5 5 5 33 5 33 5 2222 8 11 5 0 77 555 4 4 6 5 2 5 5 66 444444 5 55 77 5 55 5 888 2 88 5 11 5 11 777 5 888 000 5 66 5 5 1 5 5 5 3 5 8888888888888888 66 5 1111 5 5 4 4 0000 888 5 1 66 6666666 5 5 66 5 5 5 5 5 22 5 0 99 5 55
lowQualScore : . ....... ...... .. . . . . . . . . . . .. . ... ... . . .... . . . ... . . . . .. ..... . ... . .. . .. .. .. . . .... . . .... . . .. . .. .. .. . . ...... . . . ... .. . . . . . . . . ...... . .. . . . . . ... .. . . . .. . .. . .... . .. . . .. ... . . . . . . . .. ...... . .. .. . .. . ... . .. . .. . .. ... . ... ... . .. . . . . . . . . ................ .. . .... . . . . .... ... . . .. ....... . . .. . . . . . .. . . .. . ..
lowQualScore : 7 6666666 555555 99 0 1 0 0 0 0 0 0 0 7 99 1 000 000 7 0 9999 7 7 7 666 7 7 0 1 11 44444 7 666 7 66 0 99 99 99 2 0 8888 4 4 1111 1 4 99 0 22 99 99 7 7 666666 7 7 7 666 77 7 4 5 0 0 0 0 0 111111 4 99 0 0 0 6 0 888 11 0 0 0 88 0 88 0 1111 8 99 0 0 00 666 4 4 5 0 5 0 0 99 111111 0 99 99 7 66 0 888 5 44 0 99 0 99 444 0 888 111 0 99 0 0 4 7 7 0 2 0 2222222222222222 11 0 0000 0 0 4 4 6666 888 0 4 99 2222222 0 0 99 0 0 0 0 0 66 0 1 22 0 11
consensus : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-CG-CAGG-CCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGT-TATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
Reference ( family-2748 ) : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-CG-CAGG-CCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGTATATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|1 : TTA-ATATACTAGTACTACCATA-----TTTTTG--TTA-T-ATTC-AAAATT-ATA-AA-TTGCTGCTT-C-CAACAGAAAA-GTTATCA-CTGTACATA---GCAATAA-C-TTCT-GCGCT-ATTAAA----G--ACAATACGATTTCAGTGCCAAACTGT-TAGTTTAATG---AAT-AGA----AATTGGAAG-TTTGAT--TACTCAA--C--AGTTCACTGACGCCA-AT---TCACA-CTTGGCACG-ATTAAACC-CCATAAAA--TACACGTATACA-CGACTTG---GAAT-AAAAGTTCC--GCTTCCAGCCACA-GA-CTCG-CA-G-TCTTT-CACTTTGC--AACGATTC-GGTACGGATACCGCCGGACTTC-AAC-TAACTG-TAAAA-TT---------------------CGG-GAAACACCCATTT-CTATCTCAGACTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGCTATATCCT--AAAA-C-CCTTC-ACG---AGGAAGTAA-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-AT-AG-CACAAAA--ATGTC-AAC-T-----CCA---AGAAAGTT-TAACCCG-AAACACCTCA-AA--TATTAACAAAATTA----GC-CGGC---TGGAGAAA-----------CAT----------AT-T----GG-CTCCCTG-GTT-ACCCATCTA-CCAGACTAACTGCTG-GATTTAAAAAAA--A------AAAAAGCA--CTTCCTGCTAGACA-A----CT--GG-ACAC-GTGGCCTCA-CGCTTGACGAACAAACGGCCACTGC-------------------AATGGGTTTCCTAAA--AATAGA-------CCT-A-CTGG--CCAAC-ACTCATATA-ACG-G-AACCCA---ACTAACATACAGCCAAG------ACA-ACAC-------AAAC-AGATCTAAAA-
gi|10 : gcgaaataacaaaacaaaatttattataataagagaagtataaaaacaaactatttcacacactcacccactctcaccaaggaaaagtaacatacatgtactttgaacacaatatcaaataacaagcaaaaattatcaactatgaattaatattaaaaaaaacttttcttgcagcgatgtaattcaatagcgataaagaacaacgttatttctataaccaaaagtaaagttccaatataacaaactcttaccgaaaatttaatgtttccactagaaaatattacTA-CCAG--CAACTGCTG-GAAATCTTCAAAAAC------A------A--CT--CTGCTGAACAGA---ACT-GAAGAAAC-GTGATCGCA-TGCTTG----ACAAACA-CAGCTACTCTGATA---ATTGAT-CAAACCTGTTTAGTATA--TATAGA-------TCT-A-CTGA--TCAAC-ACTCACACT-ACG-GCAACTTGT-TATGGGGATA-AACCAACTA-TATACAGCCAAA-CCACAAAAC-TAATCTAAAA-CAAAATTCTATTTAATCACA
gi|11 : aaagtaagaacgttttcacggactgGG-GAAACACCCA-TTTCTATCTCAGCCTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGCTATATCCT--AAAA-C-CCTTC-ACG---AGGAAGT-A-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-ATACG-CACAAA
gi|12 : AAT-A-ACAAATG-CTTGTCATAGAA-CCTATACA-AATAACGA--T-----TTAGT-ACACG---CAAAACTATGTAAAAC-TCTTCACCATACAAA---TT-GAACCCA-AAACA--CCG-AAA-TATTTACATAATTAGCTTAC-CGGC---TGGAGAAA-A-GCAAAGTCCACACA-GCA--AAT-TATAAGG-CTT
gi|13 : C-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGTTCTGATA---ACTGAC-CAAACCAGTTTACTTTT--TATAGA-------ACT-A-CTGG--CAAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAAT
gi|14 : ---TCAC--CTTGGCACG-GCTAGACCTCCATACAAT--ACATATATATAGTGA--CGTC-AGAT-AAA--ACCCGGTCT----------------CA-CAGG-TCTCT-AAC--AGTACAACAATAC-AGT-CTCACATCGCC-GACTGC-AAC-CAAATG-TACAA-TT-G----TG
gi|15 : TT-GCCA---AAACCGTT-TATCCGG-AAACA--TCG-AAA-TATTTACACAATTACCTTAC-CGAC---TGGAGAAA-A-CCAATGCCCACACA-ATA--AAT-TAAAAGG-------------------CTA-ACAGACTAA-TGCTG-GAATTCGTCAAA--C------A------A--CC
gi|18 : AAG-CTTGGC--TACTCAA--CGCAGTTTGTGAACACCA-CT---ACACA-CTTGACACA-ACCTGGCCTCCATACA----ACACGTA
gi|19 : CACTGCC-GACTTCCCAC-CAAATG-AAACA-CT-GCATGTGG-CATCT--ACCCCGG-GAAACGTCCA-TT-CTCTGTCACCCTcg
gi|2 : TTACATATA-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CCCTTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAAT-C-CCTTTT----CTCATAAAA-CC-G--TTAATTTG-TTT--AAGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTT-CTGACGCCA-CTCACTCACA-CTTGGCACG-ACCAGACCTCCGTACA-TG-ACACGC-------GA--TGCC-GGAC-AAA--CTCC--TCTTCCAG-C-CC-GACC-CG-CAGGCCCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTCCC-GACTTCTCACACAAATG-AAACA-CT------TGGCCCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCA-CCTCGCACGTG-GCACAATACCAGATG---GATA--TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAA---GGCCCGGGT-TATCTT--AAAA-C-CCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATACCGCTAT-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TTAT-GCCA---AAACCGTT-ATACCCGAAAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAACA-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTT---GCT-ACCCATCTA-CCAGACTAAC--CTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCTAAAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAA--A-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|20 : aataactggcaaatgcctaaacacgacaatcaaagtcaaagtgtatataataaccacatatttgccaaatgtttcggctttttccacacttttgaaatattgttctttttacttaataag-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAaatacaag
gi|3 : TTA-AT-TA-----A-TACCATTAATTACTCACC--ATAATTAATT-AAG-TTGATA-CC-TTGCTGCTT-CATAACAGAAAAAGTT--CATCC---TCTAATCGCAATACACTTTTT-ATACT-ATAAAA-CCCGGTTTAATTTG-TT-AAAAGTTAAA-TGTATA--T-AATATTTAATGACACC-AAATTGAAAGCTTTGGTGTTAGTCAATCC--AGTTCGCTGACGCCATCA---TCACATCTTGCAACGTACCAGACCTCCGTACA---------TAT-CAGCGA--TGCCCGGAC-AAA--CTCC--TCTTCCAGCC-CC-GACC-CGCCAGG-CCTCTCCAC--TGT--AACGATAC-GGTCCTCACACTG-C-GAAGTCCCAC-AAAATGAAAACATCTGG----TGGCCCTCCTAACCGCGGCGAAACGCCGA-CT-TTCTGTCATCCCTGCACGTGTCCACAATACCAGATGGGAAGTATCTCAGCCGTCGAGATCACCTTTTCTG--ATC--GCCGG--ATATTCTCACAATCACGGCCCGGGTTTATCTTAAAAAA-C-CCCTTGGCAAT-CTGATAT-AGACAATTGACCTATCCTAAAATCCTGTCCACGATACAGC--TATTAATTAGTAACAAGTTACAAAA--ATGTCAAACTTAAT-G-CA---AAACCGGTATAACCCG-AAAGAC-TCG-AATGTATTTA
gi|4 : actgtaatgaagttcttttaaggattttgtgaggaagcagagaaaaagatgaaacgcagaataaacaatcaaaaatttatataataagataagtttgaaaaaacccaaacaacaaagtatttacactcagatttaactcactcactccacgcctagggcaactagcatacaaaataaagtatcagttattactaaatcaagaagtaactttctgcagaaattataacgcaacagtgcaataactggcaatgctaaacacacaatcaaagtcaaaagtgtatgatataacacatattgccaaatcgtttcggcttttccaactttgaaatattgttttttacttaataatgtTTA-ATATA-----A-TACCATA-----TTTCCG--ATA-TTATTT-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-ACTTTT-CTACT-ATAAAA-CCCG--TTAATTTG-TTTCAAGGT--------------CAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGA--AAA--CTCC--TCTTCCAGCC-CCTGA-C-CG-CAGG-CCTCT-CAC---GCA-AACGATACGGGT-CTCACACTCCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAG----GGCCCGGGT-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTGTCCA-GATAACGC--TATTA-ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AAT-TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTNA
gi|4 : agCCAAA--CCGGTTNA------A--TCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGTA-atctcctgctggacaatctaaaaaacgtggccgtataaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|4 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaATT--TATAGA-------ACT-AACTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAA---CAAACTAATA--AAAATCCAACTTCATCACAtaaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|5 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaccaaaccggttnaatctcctgctggacaatctaaaaaacgtggccgtataaTTA-ATATG-----A-TACCATA-----TTTCCG--ATA-TGATTT-AAG-TT-ATA-CC-TAGCTGCTT-C-TAACAGAAAAACTT--CATCT---GATA---GTAACAT-CCTTTC-GTACT-ATAAAA-CCCG--TTAATTTG-CTTCAATGTTAAA-TGT--A--TCAATAT--AAT-ACAC--AGAATGAAAG-TTTGGT--TACTCAA--C--AGTTCACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACTCATACAACAA--TGCC-GGAC-AAA--CTCC--GCTTCCAGCC-ACAGA-CTCG-CAAG-CCTCT-CAC--TGTA-AACGATAC-GGT-CTCACAATGCC-GACGTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCACCCTCGCACGTG-CCACAATACCAAATC---AGTAT-TCCCCCGTCG-GA-CACC-TTCCTG--A-C--GCTGGGAGTATTC-CACAAT---GGTCCGGGTATATCCTA-AAAA-A-CCCTT-GCA---CTAAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----ATAGT-ACAAG-TACAAAT--ATGTAAAAC-TATT-GCAA---AAAACGTT-TAACCCG-AAACA--CCGAAA--TAT
gi|6 : cctactgtattgaagttcttttaaggattgtgtgaggaagcagaggaaaaagataaaacacaaaataaacaatcaaaatgtatttatataataagacaagtttggaaaaaaaccaaacaacaaagtatttacactcactcacttccagggcaaatagcatacaaaattaagtatcagttattgactaatgcttcaaaaaatactttcttgcagaaatataatacagttgtcaatcgcaggcaatgctaacaccacaatctaagtcaaagtgttaatatcatacactactgccggatagtttcggttttcagcttgaaaatattgcTTA-ATATA-------TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATAACC-TTGCTGCTTTC-TAACAGAAAAAGTT--TATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAAACCCG--TTAATTTG-TTTCAAGGTTAA--TGT-TA--TCAATAA--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CCTGA-C-CG-CAGG-CCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACT-CC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACA-----GGGCCGGGT-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAGCGC--T-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT--ATCCCG-AAACA--TCG-AA--TATTTACACAATATTCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTATG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACC-GTTTACTATT--TAT-GA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
gi|7 : TTA-ATATA-----A-TACAATA-----TTTTCATTATA-TGATTTTAAG-TT-ATA-CA-TTGCTGCTT-C-TAACAGAAAATGTT--CACAA---TGTA---GCAATAC-CATTTTCGT--T-ATTAAA-CCCG-----ATTT---TTCTGTGCTGAA-TGC--A--TTAATAT--AAT-ACACACAAATTGAAAG-TTTGGT--TACTCAA--T--AGTTCACTGACGCCA-CT---TCGCA-CTTGGCACG-TCTAGACCTCCGTACAATGCACATGTATACAGCGA--TGCC-GGATAAAA--CTCC--GCTTC
gi|8 : ttcacacatactcattctcaccaagggcaactagcatacataataatgtatcaaaattgttgacaatgaattgaagaaataactttcttgcagcgatattttccagtagtcaatataacaggcaatgctaacaccacaatcaaagtcagggtgtcaacatatcacaatattgcccaatacatgtagtttcggttttcaacttgaaaacattacCACGTG-CCACAATACCAGATG---AGTAT-CCCCCCGTCG-GA-CACC-TTTCTA--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGT-TATCCT--AAAACC-CCCTT-GCACGGCTGGAAC-A-A
gi|8 : AACCCCCTTGCACGGC---TGGAACAA-ATCCACTGCTCACGCA-GTA--AAT-TAAAAGG-CTCCCTG-GCT-ACCCATCTA-CCAGACTAACTACTG-AAATTCGCCAAA--C------A------A--CTTCCTGCTGGACA-A---TCT-AAA-ACAC-GCGGCCACATCCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGAAGTTAGAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAGA-TAAAATCCAACTTCATCACAatccactgctcacgcagtaaattaaaaggctccctggctacccatctaccagactaactactgaaattcgccaaacaacttcctgctggacaatctaaaacacgcggccacatcccttgacaaacggccgctgctctgataactgaccaaaccggtttactatttatagaagttagaactactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacgccacaaaaccaaactaagataaaatccaacttcatcaca
gi|9 : cacgtgccacaataccagatgagtatccccccgtcggacacctttctaacgctgggagtattccacaatggcccgggttatcctaaATCTCTTTAC-CGGCATCTGGAAAAA-C-TCAATGCAGACACACGTATTAATGTAAAAGGGCTTTCTGAGCTGACCCACTTAACCAGACTAAC--CTGTGAATTCGCCAAA--A------A------AATCTCCCTGCTGAGCA-AAATCCT-AAA-AGAGAGAGGCCGCA-CCCT-G----A-AAACGGCCGCTGCTTGGATATACACTGACACAAACCGGTTTACTATTAGTATAGA-------ACTGA-CTAGGCCCAACCACTCACACTCACGCGCAACCTGTGTACGGGCATA-AACCAATTATTATACATACACGCCCACAAAACACAAACTAAAATTAAAAT
blockSeqs : C A TAATTA TT A T T . G A C T A A . . ATC A C ATA C A GTT . A A ATA C TTT G AC C GT TC GC G T TCAC T T ATGT G . C TA . GG . AGACT C C C A AC G C G . C A A T GCATG C TA C . T G T GGA TC A T T AA T CA T TCAC A AA C T TG CGG . G A A C T C TA ATTAAT A TT CT T CT C TAC C AT A C A TG TAG A ATC CA C TT G G T A G A T T CCGGTTNA AT G AATC A G A T . TAC A T AG AGTTAGA G A GC C C C G . CT T GC A TT
blockSeqs : . A T . . T . . . . . . . A . . . . T CTA . . T . A A TA C T . C . . . . G . T . . ATGT G . . T . . . GACC . . . T A . . G . T . . . GG C . . . . C . . G . . . . . . . T T A . T C AT . . T . C . . . ATTAA . C . . TA . . C G . . . A TAC . . AT . . . . T . . . T . AACA . . A . . . . . . . A . . . . . . . . . . GT . A . T
blockSeqs : . A T . . T . . . . . . . A . . . . C GTA . . T . G A A C T . . . . . . A . A . . ATGT G . . C . . . GACC . . . T A . . C . C . . . G . . . . . T . . T . . . . . . . A A . . . T . . . T . C . . . T . T . . AA . . C T . . . A ATT . . A . . . . T . . . T . CA . . T . . . . . . . G . . . . . . . . . . GT . G . T
blockSeqs : . A A . . T . . . . . . . A . . . . C GTA . . T . T A A C T . . . . . . A . G . . ATGC A . . C . . . TGAC . . . T A . . G . T . . . G . . . . . G . . T . . . . . . . T . . . . T . . . T . C . . . T . T . . AT . . C A . . . T ATT . . A . . . . T . . . T . CA . . T . . . . . . . G . . . . . . . . . . GT . A . T
blockSeqs : . A A . . G . . . . . . . A . . . . C CGT . . T . G . A T A . . . . . . A . G . . AT G . . C . . . TGAC . . . T A . . C . T . . . G . . . . . C . . T . . . . . . . T . . . . T . . . T . C . . . A . T . . AT . . A T . . . . ATT . . A . . . . . . . . T . CA . . T . . . . . . . G . . . . . . . . . . GT . A . T
blockSeqs : . A T . . T . . . . . . . T . . . . A . . . . . T . . . T . . . . . . A . G . . TG G . . C . . . . . . . . . . . G . T . . . G . . . . . G . . T . . . . . . . . . . . . T . . . T . C . . . A . T . . AT . . C T . . . . CCC . . A . . . . . . . . . . CA . . T . . . . . . . G . . . . . . . . . . TT . A . .
blockSeqs : . A . . G . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . A . . . . . . . . . . CTC . . C . . . . . . . CA . . T . . . . . . . . . . . . . . . . . . . . G .
blockSeqs : . . . . . AA . . .
blockSeqCons : A****** ** *** A* A**** T** ATGT ** ** T** A* G***** ** ** AT ** ** NTC A** CA************** T*** **** GT A*
originalCons : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGT-TA--TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-CG-CAGG-CCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGT-TATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNNCCTTAC-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
finalCons : TTA-ATATAA------TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAA-TGTA----TCAATAT--AAT-ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-CG-CAGG-CCTCT-CACT--GCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CTG-----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGGT-TATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNTCCTTAC-CGGC---TGGAGAAAA--CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAACA--------------A--CCTCCTGCTGGACA-AT---CT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAAAC-CAAACTAAAA-TAAAATCCAACTTCATCACA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCTGTAATGAAGTTCTTTTTAGGATTTTGTGTAGGAAGCAGAGAAAAAGATAAATCGCAGAATAAACAATCAAAATTTACATTAATATCAAAACAAATTTGA
Unaligned ( gi|17 ): CCGCAGAATAAACAGAAACAAAATTTATTTTAATAGTACGAAAAACTATTATTTGCACACACTCACTCTCACCAAGAAAAACTAACA
Unaligned ( gi|21 ): TCAATAGTCAATAAAAGGCAATGTTAACACCACAATCAACATTAACGTGTCA
Alignments
lowQualScore : 1111111 111111 111 111 11 11 1111 2222 1 11 1 111111 1 11 11 1111 1 11 1 111 222222 11 22 111 1111111111111111 1111 1111 1111111
lowQualScore : 5 4444444 333333 66 5 3 5 5 5 5 5 5 5 1 77 0 000 000 5 3 8888 5 5 0 999 5 0 1 0 1 0 5 5 77 33 33 5 66 66 66 6 5 8888 4 4 9999 0 1 66 5 77 66 66 4444 5 1 5 5 5 5 999 00 5 1 2 5 7 5 5 5 888888 1 77 5 5 5 5 5 888 88 5 5 5 33 5 33 5 2222 5 5 11 5 0 77 555 4 4 6 5 2 5 5 66 444444 5 55 77 5 55 5 888 2 88 5 11 5 11 777 5 5 888 000 5 66 5 5 1 5 5 5 3 5 8888888888888888 66 5 1111 5 5 4 4 0000 888 5 1 66 6666666 5 5 66 5 5 5 5 5 22 5 5 3 5 5 55
lowQualScore : . ....... ...... .. . . . . . . . . . . .. . ... ... . . .... . . . ... . . . . . . . . .. .. .. . .. .. .. . . .... . . .... . . .. . .. .. .. .... . . . . . . ... .. . . . . . . . . ...... . .. . . . . . ... .. . . . .. . .. . .... . . .. . . .. ... . . . . . . . .. ...... . .. .. . .. . ... . .. . .. . .. ... . . ... ... . .. . . . . . . . . ................ .. . .... . . . . .... ... . . .. ....... . . .. . . . . . .. . . . . . ..
lowQualScore : 7 6666666 555555 99 0 1 0 0 0 0 0 0 0 7 99 1 000 000 7 0 9999 7 7 7 666 7 7 0 1 4 7 7 7 99 66 66 0 99 99 99 2 0 8888 4 4 1111 1 4 99 0 22 99 99 3333 7 4 7 7 7 7 666 77 7 4 5 0 0 0 0 0 111111 4 99 0 0 0 6 0 888 11 0 0 0 88 0 88 0 1111 0 0 99 0 0 00 666 4 4 5 0 5 0 0 99 111111 0 99 99 7 66 0 888 5 44 0 99 0 99 444 0 0 888 111 0 99 0 0 4 7 7 0 2 0 2222222222222222 11 0 0000 0 0 4 4 6666 888 0 4 99 2222222 0 0 99 0 0 0 0 0 66 0 0 2 0 0 11
consensus : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAATGT-AT-CAATAT--AAT--ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-TATATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNTCCTTA-C-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAA-CTAAAA-TAAAATCCAACTTCATCACA
Reference ( family-2748 ) : TTA-ATATA-----A-TACCATN-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAA-CCCG--TTAATTTG-TTTCAANGTTAAATGT-AT-CAATAT--AAT--ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTCGCTGACGCCA-CN---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CC-GA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACTGCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-CCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-T-TATCCT--AAAA-C-CCCTC-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----NTAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AA--TATTTACACAATNTCCTTA-C-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAAAC-CAAA-CTAAAA-TAAAATCCAACTTCATCACA
gi|1 : TTA-ATATACTAGTACTACCATA-----TTTTTG--TTA-T-ATTC-AAAATT-ATA-AA-TTGCTGCTT-C-CAACAGAAAA-GTTATCA-CTGTACATA---GCAATAA-C-TTCT-GCGCT-ATTAAA----G--ACAATACGATTTCAGTGCCAAAC-T-GT-TAGTTT--AATGAATAG--AAATTGGAAG-TTTGAT--TACTCAA--C--AGTTCACTGACGCCA-AT---TCACA-CTTGGCACG-ATTAAACC-CCATAAAA--TACACGTATACA-CGACTTG---GAAT-AAAAGTTCC--GCTTCCAGCCACA-GA-CTC-G-CA-GTC-TTT-CACTTTGC--AACGATTC-GGTACGGATACCGCCGGACTTC-AAC-TAACTG-TAAAA-TT---------------------CGG-GAAACACCCATTT-CTATCTCAGACTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGC-TATATCCT--AAAA-C-CCTTC-ACG---AGGAAGTAA-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-AT-AG-CACAAAA--ATGTC-AAC-T-----CCA---AGAAAGTT-TAACCCG-AAACACCTCA-AA--TATTAACAAAA-----TTAGC-CGGC---TGGAGAAA-----------CAT----------AT-T----GG-CTCCCTG-GTT-ACCCATCTA-CCAGACTAACTGCTG-GATTTAAAAAAA--A------AAAAAGCA--CTTCCTGCTAGACA-A----CT--GG-ACAC-GTGGCCTCA-CGCTTGACGAACAAACGGCCACTGC-------------------AATGGGTTTCCTAAA--AATAGA-------CCT-A-CTGG--CCAAC-ACTCATATA-ACG-G-AACCCA---ACTAACATACAGCCAAG------------ACA-ACACAAA---CAGATCTAAAA-
gi|10 : gcgaaataacaaaacaaaatttattataataagagaagtataaaaacaaactatttcacacactcacccactctcaccaaggaaaagtaacatacatgtactttgaacacaatatcaaataacaagcaaaaattatcaactatgaattaatattaaaaaaaacttttcttgcagcgatgtaattcaatagcgataaagaacaacgttatttctataaccaaaagtaaagttccaatataacaaactcttaccgaaaatttaatgtttccactagaaaatattacTA-CCAG--CAACTGCTG-GAAATCTTCAAAAAC------A------A--CT--CTGCTGAACAGA---ACT-GAAGAAAC-GTGATCGCA-TGCTTG----ACAAACA-CAGCTACTCTGATA---ATTGAT-CAAACCTGTTTAGTATA--TATAGA-------TCT-A-CTGA--TCAAC-ACTCACACT-ACG-GCAACTTGT-TATGGGGATA-AACCAACTA-TATACAGCCAAA-CCACAAAAC-TAAT-CTAAAA-CAAAATTCTATTTAATCACA
gi|11 : aaagtaagaacgttttcacggactgGG-GAAACACCCA-TTTCTATCTCAGCCTCGCACTTT-CTACGATACCAGATT---AGTAG-TCCCCCGTTG-GA-TACC-TTTTTGAAA-CCAGTTGGGAGTATTC-AAAAAT---GGCCCAGC-TATATCCT--AAAA-C-CCTTC-ACG---AGGAAGT-A-ACAA-------AT------A-CCAATACA-CATAACGA--T-----TTAGT-ATACG-CACAAA
gi|12 : AAT-A-ACAAATG-CTTGTCATAGAA-CCTATACA-AATAACGA--T-----TTAGT-ACACG---CAAAACTATGTAAAAC-TCTTCACCATACAAA---TT-GAACCCA-AAACA--CCG-AAA-TATTTACATAATTAGCTTA-C-CGGC---TGGAGAAA-A-GCAAAGTCCACACA-GCA--AAT-TATAAGG-CTT
gi|13 : C-GTGGCCGCA-CCCTTG----ACAAACGGCCGCTGTTCTGATA---ACTGAC-CAAACCAGTTTACTTTT--TATAGA-------ACT-A-CTGG--CAAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAA-CTAAGA-TAAAAT
gi|14 : ---TCAC--CTTGGCACG-GCTAGACCTCCATACAAT--ACATATATATAGTGA--CGTC-AGAT-AAA--ACCCGGTCT----------------C-A-CAGGTC-TCT-AAC--AGTACAACAATAC-AGT-CTCACATCGCC-GACTGC-AAC-CAAATG-TACAA-TT-G----TG
gi|15 : TT-GCCA---AAACCGTT-TATCCGG-AAACA--TCG-AAA-TATTTACACAATTACCTTA-C-CGAC---TGGAGAAA-A-CCAATGCCCACACA-ATA--AAT-TAAAAGG-------------------CTA-ACAGACTAA-TGCTG-GAATTCGTCAAA--C------A------A--CC
gi|18 : AAG-CTTGGC--TACTCAA--CGCAGTTTGTGAACACCA-CT---ACACA-CTTGACACA-ACCTGGCCTCCATACA----ACACGTA
gi|19 : CACTGCC-GACTTCCCAC-CAAATG-AAACA-CT-GCATGTGG-CATCT--ACCCCGG-GAAACGTCCA-TT-CTCTGTCACCCTcg
gi|2 : TTACATATA-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CCCTTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAAT-C-CCTTTT----CTCATAAAA-CC-G--TTAATTTG-TTT--AAGTTAAATGT-AT-CAATAT--AAT--ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTT-CTGACGCCA-CTCACTCACA-CTTGGCACG-ACCAGACCTCCGTACA-TG-ACACGC-------GA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-C--GA-C-CCG-CAGGCCCTCT-CAC--TGCA-AACGATAC-GGT-CTCACACTCCC-GACTTCTCACACAAATG-AAACA-CT------TGGCCCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCA-CCTCGCACGTG-GCACAATACCAGATG---GATA--TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAAA---GGCCCGGG-T-TATCTT--AAAA-C-CCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATACCGCTAT-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TTAT-GCCA---AAACCGTT-ATACCCGAAAACA--TCG-AA--TATTTACACAATATTCTTA-C-CGGC---TGGAGAAACA-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTT---GCT-ACCCATCTA-CCAGACTAAC--CTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCTAAAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAA--A-TATACATACACA-CCACAAAAC-CAAA-CTAAAA-TAAAATCCAACTTCATCACA
gi|20 : aataactggcaaatgcctaaacacgacaatcaaagtcaaagtgtatataataaccacatatttgccaaatgtttcggctttttccacacttttgaaatattgttctttttacttaataag-----A-TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAaatacaag
gi|3 : TTA-AT-TA-----A-TACCATTAATTACTCACC--ATAATTAATT-AAG-TTGATA-CC-TTGCTGCTT-CATAACAGAAAAAGTT--CATCC---TCTAATCGCAATACACTTTTT-ATACT-ATAAAA-CCCGGTTTAATTTG-TT-AAAAGTTAAATGT-ATATAATATTTAATG-ACACC-AAATTGAAAGCTTTGGTGTTAGTCAATCC--AGTTCGCTGACGCCATCA---TCACATCTTGCAACGTACCAGACCTCCGTACA---------TAT-CAGCGA--TGCCCGGAC-AAA--CTCC--TCTTCCAGCC-CC-GACC-C-GCCAGGCC-TCTCCAC--TGT--AACGATAC-GGTCCTCACACTG-C-GAAGTCCCAC-AAAATGAAAACATCTGG----TGGCCCTCCTAACCGCGGCGAAACGCCGA-CT-TTCTGTCATCCCTGCACGTGTCCACAATACCAGATGGGAAGTATCTCAGCCGTCGAGATCACCTTTTCTG--ATC--GCCGG--ATATTCTCACAATCACGGCCCGGGTT-TATCTTAAAAAA-C-CCCTTGGCAAT-CTGATAT-AGACAATTGACCTATCCTAAAATCCTGTCCACGATACAGC--TATTAATTAGTAACAAGTTACAAAA--ATGTCAAACTTAAT-G-CA---AAACCGGTATAACCCG-AAAGAC-TCG-AATGTATTTA
gi|4 : actgtaatgaagttcttttaaggattttgtgaggaagcagagaaaaagatgaaacgcagaataaacaatcaaaaatttatataataagataagtttgaaaaaacccaaacaacaaagtatttacactcagatttaactcactcactccacgcctagggcaactagcatacaaaataaagtatcagttattactaaatcaagaagtaactttctgcagaaattataacgcaacagtgcaataactggcaatgctaaacacacaatcaaagtcaaaagtgtatgatataacacatattgccaaatcgtttcggcttttccaactttgaaatattgttttttacttaataatgtTTA-ATATA-----A-TACCATA-----TTTCCG--ATA-TTATTT-AAG-TT-ATA-CC-TTGCTGCTT-C-TAACAGAAAAAGTT--CATCT---TATA---GCAATAC-ACTTTT-CTACT-ATAAAA-CCCG--TTAATTTG-TTTCAAGGT-----------CAATAT--AAT--ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGA--AAA--CTCC--TCTTCCAGCC-CCTGA-C-C-G-CAGGCC-TCT-CAC---GCA-AACGATACGGGT-CTCACACTCCC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACAG----GGCCCGGG-T-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTGTCCA-GATAACGC--TATTA-ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT-TAACCCG-AAACA--TCG-AAT-TATTTACACAATATTCTTA-C-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTCTG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTNA
gi|4 : agCCAAA--CCGGTTNA------A--TCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGGCCGTA-atctcctgctggacaatctaaaaaacgtggccgtataaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|4 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaATT--TATAGA-------ACT-AACTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAA---CAAA-CTAATA--AAAATCCAACTTCATCACAtaaatttatagaactaactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacaccacaaacaaactaataaaaatccaacttcatcaca
gi|5 : agttaatataataccatatttccgatattatttaagttataccttgctgcttctaacagaaaaagttcatcttatagcaatacacttttctactataaaacccgttaatttgtttcaaggtcaatataatacacaaattgaaagtttggttactcaacagtttactgacgccacgtcacacttggcacgaccagacctccgtacaatgtacacgcatacagcgatgccggaaaactcctcttccagcccctgaccgcaggcctctcacgcaaacgatacgggtctcacactcccgacttctcaccaaatgaaacactgtggcctctaccccgggaaacgcccattctctgtcagcctcgcacgtggcacaataccagatgagtattcccccgtcggacacctttctgacgctgggagtattccacagggcccgggttatcttaaaactcccttgcactgaaataacaattgcctatcctaaaacctgtccagataacgctattaatagtacaagtacaaaaatgtcaaactattgccaaaaccgtttaacccgaaacatcgaattatttacacaatattcttaccggctggagaaaaccaatgcccacacagtaaattaaaaggctttctggctacccatctaccagactaactgctggaattcgccaaacaacctcctgctggacaatctaaaaaacgtgaccgcacccttgacaaacagccgctgctctgataactgaccaaaccggttnaatctcctgctggacaatctaaaaaacgtggccgtataaTTA-ATATG-----A-TACCATA-----TTTCCG--ATA-TGATTT-AAG-TT-ATA-CC-TAGCTGCTT-C-TAACAGAAAAACTT--CATCT---GATA---GTAACAT-CCTTTC-GTACT-ATAAAA-CCCG--TTAATTTG-CTTCAATGTTAAATGT-AT-CAATAT--AAT--ACAC--AGAATGAAAG-TTTGGT--TACTCAA--C--AGTTCACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACTCATACAACAA--TGCC-GGAC-AAA--CTCC--GCTTCCAGCCACA-GA-CTC-G-CAAGCC-TCT-CAC--TGTA-AACGATAC-GGT-CTCACAATGCC-GACGTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCACCCTCGCACGTG-CCACAATACCAAATC---AGTAT-TCCCCCGTCG-GA-CACC-TTCCTG--A-C--GCTGGGAGTATTC-CACAAT---GGTCCGGG-TATATCCTA-AAAA-A-CCCTT-GCA---CTAAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAACGC--T-----ATAGT-ACAAG-TACAAAT--ATGTAAAAC-TATT-GCAA---AAAACGTT-TAACCCG-AAACA--CCGAAA--TAT
gi|6 : cctactgtattgaagttcttttaaggattgtgtgaggaagcagaggaaaaagataaaacacaaaataaacaatcaaaatgtatttatataataagacaagtttggaaaaaaaccaaacaacaaagtatttacactcactcacttccagggcaaatagcatacaaaattaagtatcagttattgactaatgcttcaaaaaatactttcttgcagaaatataatacagttgtcaatcgcaggcaatgctaacaccacaatctaagtcaaagtgttaatatcatacactactgccggatagtttcggttttcagcttgaaaatattgcTTA-ATATA-------TACCATT-----TTCCCG--ATA-TTATTC-AAG-TT-ATAACC-TTGCTGCTTTC-TAACAGAAAAAGTT--TATCT---TATA---GCAATAC-CCTTTT-GTACT-ATAAAAACCCG--TTAATTTG-TTTCAAGGTTAA-TGTTAT-CAATAA--AAT--ACAC--AAATTGAAAG-TTTGGT--TACTCAA--C--AGTTTACTGACGCCA-CG---TCACA-CTTGGCACG-ACCAGACCTCCGTACAATGTACACGCATACAGCGA--TGCC-GGAC-AAA--CTCC--TCTTCCAGCC-CCTGA-C-C-G-CAGGCC-TCT-CAC--TGCA-AACGATAC-GGT-CTCACACT-CC-GACTTCTCAC-CAAATG-AAACA-CT-G----TGG-CCTCT--ACCCCGG-GAAACGCCCA-TT-CTCTGTCAGCCTCGCACGTG-GCACAATACCAGATG---AGTAT-TCCCCCGTCG-GA-CACC-TTTCTG--A-C--GCTGGGAGTATTC-CACA-----GGGCCGGG-T-TATCTT--AAAA-CTCCCTT-GCA---CTGAAAT-A-ACAATTG-CCTATCCTAAAA-CCTATCCA-GATAGCGC--T-----ATAGT-ACAAG-TACAAAA--ATGTCAAAC-TATT-GCCA---AAACCGTT--ATCCCG-AAACA--TCG-AA--TATTTACACAATATTCTTA-C-CGGC---TGGAGAAA-A-CCAATGCCCACACA-GTA--AAT-TAAAAGG-CTTTATG-GCT-ACCCATCTA-CCAGACTAACTGCTG-GAATTCGCCAAA--C------A------A--CCTCCTGCTGGACA-A---TCT-AAA-AAAC-GTGACCGCA-CCCTTG----ACAAACAGCCGCTGCTCTGATA---ACTGAC-CAAACC-GTTTACTATT--TAT-GA-------ACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACA-CCACAAAAC-CAAA-CTAAAA-TAAAATCCAACTTCATCACA
gi|7 : TTA-ATATA-----A-TACAATA-----TTTTCATTATA-TGATTTTAAG-TT-ATA-CA-TTGCTGCTT-C-TAACAGAAAATGTT--CACAA---TGTA---GCAATAC-CATTTTCGT--T-ATTAAA-CCCG-----ATTT---TTCTGTGCTGAATGC-AT-TAATAT--AAT--ACACACAAATTGAAAG-TTTGGT--TACTCAA--T--AGTTCACTGACGCCA-CT---TCGCA-CTTGGCACG-TCTAGACCTCCGTACAATGCACATGTATACAGCGA--TGCC-GGATAAAA--CTCC--GCTTC
gi|8 : ttcacacatactcattctcaccaagggcaactagcatacataataatgtatcaaaattgttgacaatgaattgaagaaataactttcttgcagcgatattttccagtagtcaatataacaggcaatgctaacaccacaatcaaagtcagggtgtcaacatatcacaatattgcccaatacatgtagtttcggttttcaacttgaaaacattacCACGTG-CCACAATACCAGATG---AGTAT-CCCCCCGTCG-GA-CACC-TTTCTA--A-C--GCTGGGAGTATTC-CACAAT---GGCCCGGG-T-TATCCT--AAAACC-CCCTT-GCACGGCTGGAAC-A-A
gi|8 : AACCCCCTTG-CACGGC---TGGAACAA-ATCCACTGCTCACGCA-GTA--AAT-TAAAAGG-CTCCCTG-GCT-ACCCATCTA-CCAGACTAACTACTG-AAATTCGCCAAA--C------A------A--CTTCCTGCTGGACA-A---TCT-AAA-ACAC-GCGGCCACATCCCTTG----ACAAACGGCCGCTGCTCTGATA---ACTGAC-CAAACCGGTTTACTATT--TATAGAAGTTAGAACT-A-CTGG--CCAAC-ACTCACACT-ACG-GCAACCTGT-TACGGGCATA-AACCAAGTA-TATACATACACG-CCACAAAAC-CAAA-CTAAGA-TAAAATCCAACTTCATCACAatccactgctcacgcagtaaattaaaaggctccctggctacccatctaccagactaactactgaaattcgccaaacaacttcctgctggacaatctaaaacacgcggccacatcccttgacaaacggccgctgctctgataactgaccaaaccggtttactatttatagaagttagaactactggccaacactcacactacggcaacctgttacgggcataaaccaagtatatacatacacgccacaaaaccaaactaagataaaatccaacttcatcaca
gi|9 : cacgtgccacaataccagatgagtatccccccgtcggacacctttctaacgctgggagtattccacaatggcccgggttatcctaaATCTCTTTA-C-CGGCATCTGGAAAAA-C-TCAATGCAGACACACGTATTAATGTAAAAGGGCTTTCTGAGCTGACCCACTTAACCAGACTAAC--CTGTGAATTCGCCAAA--A------A------AATCTCCCTGCTGAGCA-AAATCCT-AAA-AGAGAGAGGCCGCA-CCCT-G----A-AAACGGCCGCTGCTTGGATATACACTGACACAAACCGGTTTACTATTAGTATAGA-------ACTGA-CTAGGCCCAACCACTCACACTCACGCGCAACCTGTGTACGGGCATA-AACCAATTATTATACATACACGCCCACAAAACACAAA-CTAAAATTAAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CGCTGTAATGAAGTTCTTTTTAGGATTTTGTGTAGGAAGCAGAGAAAAAGATAAATCGCAGAATAAACAATCAAAATTTACATTAATATCAAAACAAATTTGA
Unaligned ( gi|17 ): CCGCAGAATAAACAGAAACAAAATTTATTTTAATAGTACGAAAAACTATTATTTGCACACACTCACTCTCACCAAGAAAAACTAACA
Unaligned ( gi|21 ): TCAATAGTCAATAAAAGGCAATGTTAACACCACAATCAACATTAACGTGTCA