lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 111 33 111 111111 11111 1111 111 1111 11 2 4 1 1 1 22 11 22222 0000000000000000000000000000000000000000000000000000000000000000000000 1 22 66666666666666666666666 11 222 333333333333333 1111111111 1 1111 222222222 1 2222222 1 555555555555555555555 111111 22 1 888888888888888888888888888888888888888 1 22 888888888 222222 1 222 111 1 55555 1 333333 1 333333333 1 1 88888888888 3333 1 1 33 1 11 1 1 2222 1 1 55555555 1 11111 1 1 666666666 44444444444444444444444444 1 33333 33 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 22 1 1 1 1 4 222222222 1 1 4444444 999999999999999999999999999999999999
lowQualScore : 4 4 8 55 3 3 3 5 000 3 3 55 00 4 4 777 111 4 3 4 55 3 0 666666 5 5 5 5 5 5 77777 6666 66 5 3 5 5 888 4444 11 8 0 0 2 2 0 0 0 33 33 2 88888 3 8888888888888888888888888888888888888888888888888888888888888888888888 6 0 6 22 6 11111111111111111111111 11 000 2 444444444444444 8 8 0 1111111111 6 8 1 7777 888888888 6 8 6666666 6 555555555555555555555 111111 66 0 8 77 8 0 8 8 8 6 8 0 666666666666666666666666666666666666666 88 0 44 3 3 1 111111111 666666 0 444 111 0 88888 0 111111 0 444444444 0 4 88888888888 4444 99 5 22 0 33 0 1 33 0 0 1111 6 3 88888888 3 6 77777 3 3 555555555 55555555555555555555555555 6 7 3 88888 00 6 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 33 0 3 66 9 2 0 3 3 7 0 777777777 5 3 1111111 333333333333333333333333333333333333
lowQualScore : . . . .. . . . . ... . . .. .. . . ... ... . . . .. . . ...... . . . . . . ..... .... .. . . . . ... .... .. . . . . . . . . .. .. . ..... . ...................................................................... . . . .. . ....................... .. ... . ............... . . . .......... . . . .... ......... . . ....... . ..................... ...... .. . . .. . . . . . . . . ....................................... .. . .. . . . ......... ...... . ... ... . ..... . ...... . ......... . . ........... .... .. . .. . .. . . .. . . .... . . ........ . . ..... . . ......... .......................... . . . ..... .. . ........................................................................................................................................................................................................................... . .. . . .. . . . . . . . ......... . . ....... ....................................
lowQualScore : 0 0 0 00 6 6 6 1 000 6 6 00 55 0 0 000 222 0 2 0 55 4 4 666666 0 0 0 0 0 0 55555 2222 99 0 4 0 7 333 5555 00 0 0 0 5 5 0 0 0 88 88 5 88888 2 1111111111111111111111111111111111111111111111111111111111111111111111 7 8 7 55 7 33333333333333333333333 00 888 5 000000000000000 0 0 8 5555555555 0 0 0 0000 000000000 0 0 4444444 0 666666666666666666666 888888 22 8 0 44 0 8 0 0 0 0 0 8 888888888888888888888888888888888888888 55 0 88 2 2 2 222222222 888888 0 000 000 0 22222 0 555555 0 222222222 0 5 88888888888 8888 55 5 88 0 88 0 2 88 0 0 2222 8 3 33333333 3 7 00000 3 3 333333333 00000000000000000000000000 0 3 3 77777 77 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 88 0 0 55 8 5 0 3 3 3 0 777777777 0 3 3333333 333333333333333333333333333333333333
consensus : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TT-AA--CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATAAC---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCAT-AACTGAGTTG-TACACGTCACAA-CACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------AA----------------------T------------------TTTTCAG-TTTGGCCAC-ATC-AACCG-AACA-----------AAA--C-G---AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGGATTTA--TTTTGTTCGA-TAAAT----GTGGCCAT---A-----GAGAATAT-TTCT----TAT-TTTAGGTCCT-T--T-G----AC-A-G--CATAATT-TA--TACA-CTG-AATGATGATAGATTTTCA-TTTCCAAAA-GAG-CAA-AACG-TGTCCATATAA-AC-CT--------TA-AAAA--TG-TTA-----G-ATTTTTACA-AACTAA-TATAATTCATATCCCATTTATATTC-------GAATTC-T--T-TTTA-CA-N-TG-A-TGATCG-AGGAA-T--GAA-ATG---C--ATTC-GAGGTA----A-TAATC-GTCGATGATAC----GCTTAGTTGAC--AATAATCAATATAGTTCAACGTCA-ATATTT-G-GACAATGTGCATAAA--TGTA-CAAGCC-CAGTTTATCTGTAATGT----TGTAAA-TAA--N-A---AAAATA-AAAGA-TTT-GATACC-AA-TTAAT-T-TGT---ACTTTTT-ATT-TTGT---CTA-AAA-A-T-AGTATTAAATTCAAT-GC--CG-CACAA--TTTTGTTG-CC--ATG----GAC----ACAT-TG-AAAATCAA------------AG-----GG---GGGA-TAATTCAA-AAACAC-CCGG-AATTTTGAA------------GATTC--GTCC-----GATG---A--T--ATGT-----AGCCNG--TCTT-GGA-G-AATT-TG-----TT-----------AA---TAT-------TT------T--TCT--ACC-ATTT--CT-GACNATAAAAATCCT-TTG-GCGGTTTAGTAAAGATTGTGAATTTAG---GTTA--ATGTACA-AT-TTTTA-CTGGACGTA-ACATTA---G--CCTA----GT--TATT-GA----AGGGGGGGG
Reference ( gi|3 ) : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TT-AA--C--GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATAAC---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCAT-A-CTGAGTTGATACACGTCACAA-CACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------AA----------------------T------------------TTTTCAG-TTTGGCCAC-AT--AACCG-AAC------------AAA--C-G---AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGAATTTA--TTT-GTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-AT-T-CT----TAT-TTTAGGTC---T--T-G----AC-A-G--CATAATT-TA--TACATCTG-AATGATGATAGATTTTCA-TTTCCAAAA-GAG-CAA-A-CG-TGTCCATA----AC-TT--------TA-AAAA--TG-TT------G-ATTTTTGCA-AACTAAATATAATTCATATCCCATTTATAT---------GAATTC-C--T-TTTA-CA-T-TG-A-TGATCG-AGGA--T--GAA-ATG---C--ATTC-GAG-TA----A-TAATC-GTTGATGATACATGTACTTAGTTGAC--A-TAATCAATATAGTTCAACGTCA-ATATT--G-GACAATGTGCATAAA--TGTA-CAAGCC-CAGTTTATCTGTAATGT----TGTGAA-TAA--C-A---AAAATA-AAAGA-TTT-GATACC-AA-TTAAT-T-T-----ACTTTTTAAATATTGT---ATA-AAA-A-T-A-TATCAAATTCAAT-GC--TA-CACAAAATTTTATTG-C---ATG----GAC-CA-ACAT-TG-AAAATCAA------------GG-----GG---GGGGGTAATTCAACAAACATCCCGGTTATTTTGAA------------GATTC--GTCC-----AAT----------ATGT-----AGCCTG--TCTT-AGA-A-AATT-TG-----T------------AA---TAT-------TT------T--TTT--ACC-ATTT--CT-GACAATAAAAATCCT-TTG-GCAGATTAGTAAAGATTGTG-ATTTAG---GTTG--ATCTACA-AT-TTTT--CTGGACGTA-ACATT----G--CCTA----GTG-TATT-GA----AGGGGGGGG
gi|5 : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGACC-TAGTA---TTTTCATGAAAAA-TT-AA--CT-GAA-TGTTAAT-ATTAAAC--AA----TTGCC-TG--A-TTAGTATCA-TA-C---ATATTTG-TTAG-T-AAAATGA-----ATC----AT--A-TCACAATTGTTA-AA---TCTCGTTGACG--TCAT-AACTGAGTTG-TA-ACGTCACAA-CACG-TGA-CG--TT--TGCGTTTTT-CT-CTTTAAAA-------ATT-GTA-------------AAATTTTGGAACTACTTGGACT--TACA---------------TTTTCAG-TTTG-CCAC-AT--CACCACAACGAAATAAAAATAAAA--T-A---AA--CTTCTGAGTTTTTGA-----T--AA-GTAGAAATGAA-AACTGTCACAAATAAATGT-GGATTTA--TTTTGTTTCA-TATATCTCTGTGGCCATTAGA-----GAAAA-AT-T-TC----TATATTTAGGTTCTTT--T-G----AC-A-AGCCATAATTATAATTACA-CTG-AATGATGATAGATTTGCA-TTTCAAAAA-GAG-CAA-AACG-TGTCCATAGTAAAC-CTACGATTAATA-AAAA--TG-TT------GGATTTTTA-A-AACTAA-TATAAT-CATATCCCATTTATATT--------GAATTC-C--TATTTAACA-TGTG-A-TTATCG-AGGAA-T--GAA-ACG---C--ATTC-GAGGTA----A-TAATC-GTCGATGATAC-------TAGTTGAC--AATAATCAATATAGTTCAACGTCA-ATATTT-G-GACATTGTGCATAAA--TGTA-TAAGCC-CAGTTTATCTGTAATGT----TGTAA
gi|14 : GCCA-GA-GCC-GC--GAA-AGG-TAAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TT-AA--CT-GAA-AGTTAAT-A---AAT---GA-TAT---G-TA--AATGA-TATCA
gi|7 : GCTA-GA-GCC-AC--GAA-AGG-CGCATTTTGGCC-T-ATA---TTTACCCGAAAAA-TTAAA--T--GAA-ACTTAAC-A---AAC--AAT-GATTGCA-CT--AAATATCGTC-TTTAC---AAATT-G-T-AG-T-AAA-TGT-----TTT--C-AT--A-TGAAACT-TTTA-A
gi|2 : CTATGA-GCAGAC--GAA-AGG-TCAAAATCGGCCCTGGTAATTTTTCCATGAAAAAATT-AA--CT-GAA-AGTTAATTC---AAC--AAAATATTGCA-TG--AATT-TTATCAATA-C---ATATT-G-T-AG-T-AAA-TGT-----ATC--AGAT--A-TCAAAAG-TTTATAA---TCTAGT-GACTACTCAT-A-ATGAGTTG-TACACGTCACAA-CACA-TGG-CG--TTTTGCCTTTTG--ATACTTTAAAA-------AAA-GTC-------------AAATCTTTGGAAACTTGACTTAAAT------------------TTTTCAG-TTTG-CCAC-TC--AACCG-AAC------------AAAACCAG---AAGACTTCTGA---ATTGAAGGAAC--AT-G---AAATGAATAACTG-CACAAATAAATGTT----------------CAG-TGAAT----GTGGCCAT---A-----GAGAATAT-TTCT----TAT-TTTAGGTC---TATT-GTACTAT-A-G--CATAAT---A--TACAGCTG-AATGATGATAGATTTTCAATTTCCAAAA-GAG-CAACA-CG-TGTCCATA----G------------TA-AAAG---A-TTAAACGAG-ATTTTTACATAACCTAATATAATTCATATCCCATTTATGTTCTG-----GAATTTGT--T-TTTA-CA-A-TG-ACTGATCGGAGGAACG--GAATATG---A--CTTC-GAGATA----AATAATC-GC-GATGA-----ATACTTAGTTGAC--AATAAC--ATATAGTTCAA--TCA-ATATTTTG-GACAATGAGCATAAGATTGTA-CAAGCC-CAGTTTATCTGTAATGT----TGT-AA-TAAAGT-AAACAAAATAGAAAGATTTT-GATACCAAA-TTAAA-T-TGTGTAAATTTTT-AAT-TTGT---CTAGAAA-A-TAA-TATTAAATTAAATAGC--CGTCAACAAATTTTGTTGTC---CTGCAATGATACACACAT-TGAAAAATCAAGAAAAAGGGAAGGG-----GG---GGGGGTAATT------ACAT-CCG--TAATTTGAAAACCGGAAATTGAATTCCAGTCCCGACTAATGTATATATAAATGT-----ACCCTG--TATT-GGAGA-AATT-TG-----T------------AA----AT-------TC------T--TTCTAACCAATTTG-CTAGACAA-ATAAATC---TTGTGCAGTTTTGTAAAGATTGTGAATTTAGTTAATTA--ATGTACATAT-TTTTACCTGGACGTAGATATA----GGTCCTAAGTCGT--TATTGGA----AGGGGGGGGttttatcaaaatttcagtttggccacatcaaccgaacaaaatgaaaatcctagtattattaaagggatgaaaaaggcacagaaatatgatg
gi|9 : TA-GAAGCC-AC--GAATAGG-T-AAAATCGGCC-TGGTAT--TTTTCATG-AAAA-TT-AA--CT-GAA-AGTTAAT-A---AAC---AA-TATTGCA-TG--AATTATTATCAAT-AC---ATATT-G-T-AG-TCAAA-TGTC----ATCA-C-AT--A--CAAAAT-GTTA-AACATTCT-GT-GACG--TCAT-ggggtattcctatcaagagcacagaggcaatgcatttccaccattgtttggcgtcgaaaaaattaaattttaatttagagtgagagttgaaaatact
gi|16 : TA-GA-GCC-AC--GAA-AGG-TCAAATTCGGCC-TGGTA---TTTTCATGAAAAA-TT-AA--C--
gi|1 : A-GA-GCCCACCGGAA-AGGGTCAAAATCGGCC-TGGTA---TTT-CATGAAAA---T-AAGCT--GAAGAGTAACT-A---AAC--AAA-TAT-GCAATG--ATTTATTATCAATAAT---ACATT-G-T-AG-T-AA--TGT-----ATC--C-AC--AATCAAA-T-GTTA-AAG--TCT--T-GA-G--TCAT-AACTGAGTTG-TACACGT-ACAAACACAATGATCAATTT--GC-GTTTTGGTC-CTTTAAAATAGTCCAAATTGTTGAACTTTGACTCAAA----------------------T------------------TTTTCAGCTTTGTCCAC-ATCAAACCG-AAC------------AAA--C-ACAAAA--CTTCTGA--CATTGA-----T--AAAG---AAATGAA-AACTG-CACAAATAA-TGTTGATTTCAATTTT-TTTCGACTAAAT----GTGGCCAC---GAAGGGGAGAATAT-T-TCGTGATATGTTTAGGTCCT-T--T-G----A--A-G--AATAATT-TA--CAC---TGGAATGGTGATAGATT--CA-TTTCCAAAAAGAGGCAA-AATG-TGTCCATATAA-AC-AT--------TA-AAAAAATGGTTA-----G-ATTTTTACA-AACTA--TATAATTGATATCCTATT-ATATTTGTCCCTTGAATTC-T--T-TTTA-CAGT-TGGA-TGATCG-AGGAAATCGGAA-ATGTGAC--ATTAAGAA-TAGGTTA-TAATCCGTCGATGATA-----GCT-AGTTGACCAA-TAATTCATA-AGTTCAACGTCATATTTT--GAGGCAATGTGCATAAA--TGTAACAAGCCACAGTTTATCTGTAATGTATGTTATCAA-TAA--CCA---AAAATA-AAA-A-TTTAGATACC-AAATTAAT-T-TGTT--ACTTGTTAATTTTTGTTATACA-AAACA-T-AGTATTAAAT-CAAT-GCCTTG-CACAA--TTTTGTTG-CCCTATG----TAC----ACATGTG-AAATTTAA------------AAAAAAAGGACCGGGACTAATTCAACAAAAACACCGGAAATTTTGAA------------GATTC--GTCC-----GATGATAAGTT--ATATTATTAAGCCTGAGTCTTTGGA-G-AATTGTG-----TT-----------AA---TAT-------TT------T--CT---ACC-ATTTTTCT-GACAATAAAATTCCTATTG-GCGCGTTAGTA--GATTGTGTATTTAG---GGTGGAATGCACA-ATATTTTA-CTGGACGTA-ACATTATAGG--CCTA----GT--T-TT-GAGGTCAGGGGGt
gi|6 : A-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TT-AA--CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAAT-AC---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAA-CTGAGTTG-TACACGTCACAA-CACG-TGA-CGT-TT--GCCGTTTT--CT-CTTT-AAA-------AAT-GTCA------------AA----------------------TTTGGAACTTTGACTTAAATTTTAAG-TTTGGCCAC-ATC-AACCG-AACA-----------AAA--C-G---Atattcctatgggcacggaggcaatggcgcctgtccacacttgtttgcggcaaaaaagatagatttgaattgtagagcaaattaaaagggttggctgacaaa
gi|11 : A-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-T-GTA---TTTTCATGAAAAA-TT-AA--CT-GAT-AGTTAAT-A---AAC--AAA-TATTGCA-TT--AATTACTATCAAT-AC---ATATT-G-T-AC-A-AAA-TTC-----ACCCTC-ATTCA-TTAAAAC-GTT
gi|13 : A-GA-ATG-AC--GAA-ACG-TCACAATCGGCC-T-GTA---TTTTCAGGAAAAA-TT-AA--CT-GAA-AGTTAAC-A---AACATAAA-TA---CA-TGCCAATTggttttatttttcaa
gi|8 : --GGA-ATG-TCGAAATCGGCA-TG-TA---TTTTCATGAAACA-TT-AA--CTGGAA-ACTTCGC-A---AAC----A-TAGTGCA-CT--AAT--------ATAACTTTACACT-GCT-AGTT-AAA-TTTATGCCATT--C-AT--A-TCAAATT-GTCA-A-----CT-AC-GACctgttatatcttg
gi|7 : T-ATC-------------AA----------------------A------------------ATTTCAG-TTTGGCCAC-ATC-AACCG-AACA-----------AAA--T-GA--AA--ATCCTAG--TATT-A-----TTAAA-G---GGATGAA-AAAGG-CACAGAAATATGATGaaatgtgttctaaatggccatagcattgtaaagttt
gi|15 : gctagagccacgaaaggcgcattttggcctatatttacccgaaaaattaaatgaaacttaacaaacaatgattgcactaaatatcgtctttacaaattgtagtaaatgttttcatatgaaacttttaatttTT-------------AA----------------------A------------------TTTTCAG-TTTGGTCACAAC--AACCG-AACA-----------AAA--CAA---AA--CTTC
gi|4 : tggaactttgac-G---AAATGAA-AATTG-CACAAATAAATGTTGGATTTA--TTTTGTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-AT-TTCT----TAT-TTTAGGTC---T--TTG----GC-AAG--CATAATT-TA--TACA-CTA-AATGATGATAGATCTTCA-TTTCCAAGA-GAG-CAA-A-CG-TGTCCATATAA-ACATT--------CA-AAAA--TG-GTA-----G-ATTTTTACA-AACTAA-TATGATTCATATCCCATTTATTTT--------GAGTTT-TATT-TTTA-CA-A-TG-A-TGATCG-GGGAA-T--GGA-ATG---TGAATTC-GAGGTA----A-TAATC-GTCGATGATAC-------TAGTTGAC--AATAATCAATA--GTTCAACATCA-ATATTT-G-GACAGTGTGCTTAAA--TATA-CACACC-CAGTTTATATGTAATGT----TGTAAAGTAA--A-T---AAAATA-AAAGA-AAT-GATACC-AA-TTAATATAT-----ACTTTTTTATT-TTGT---CTA-AAA-AAT-AATATTTAATTCAAT-GC--CG-CACAAC-TTTTGTTG-CC--ATG----GAC----ACAA-TG-AAAATCAA------------AG-----GG---GGGA-TA-TTCAAAAAAC------GTAATTTTGAA------------GATTC--ATCC-----GAT----------ATGT-----AGCCAG--TCTT-GGA-GGAATT-TGAAAAGT------------AAACATATACATGTATT------T--TCT--ACC-AGTT--CT-GACCATAAAA-TCCT-TTG-GCAGTTTAGTTAAGATTGTGAATTTAG---GTTA--ATGTACA-AT-T---------ACATA-----TAG--G--CCTA----GTGTTATT-AA----AGGAGGGAG
gi|10 : --TTT-GTTCGA-TGCAT----GTGGCCAA---A-----TGGAA-ATGT-CT----TGT-TTTATGTT---T--TCG----GCAA-A--CGTAATT-TT--TGCTTC-G-AATGATGATAGTTTCCCA-TT----AAA-AAA-TGA-A-CGCTGTCT--------C-CT--------TATAAAA--TA-TT------A-Aggggtattcagtggcttaaaaattagcttcgtatgaggcatggaggcatgtgctttcacattgttgcggcaaagcatgaaatctaatttagagtcaagttaaaagaatattaggtttacaaaaaaatatgcagtgcctagatattgaaaat
gi|12 : TTCAA------------GATTC--ATGC-----GAT----------ATG--------CCAG--TTTTGAGA-G-AATT-TG-----TTAAGGAAGGCATAA---TAT-------TTATATATTCATCT--ACC-ATTT--CA-TACCAT-AAAATCCT-Tacaccgagagattttttacat
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11111 1111 111 1 11 11 11111 2222222 6666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 1111 11 111 22222222 111 1111 1111 1111111 1 1 11 22222222222 1 222 2222222222 1111 333333333333 11 11 1111 222222222 1111 333333333 11 11 1111 1111 1 111 1 1 1 1 1 222 1 11111 222222222 1 1 111111 22 1 33333 1111 11 1 1 88888888888888888888 111 1 222 11 11 444444444444 11 6666666666666666666666666666666 111 66666666666666666666666666666666666666666666 11 11 1 111 11 1 1 11 4444444444444 3333 1 1 2222
lowQualScore : 3 3 7 44 3 3 3 6 999 3 3 3 3 3 666 999 3 2 3 55 2 22 777 4 4 4 4 4 4 55555 3333 66 4 2 4 5 555 1 5 99 0 8 8 8 8 99 11 99999 0 6666666 6 6666666666666666666666666666666666666666666666666666666666666666666666666666 5 7 77 5 77 8888888 5 6666 55 444 55555555 6 111 6 6 8 2222 6 4444 6666666 9 3 9999 3 33 6 00000000000 6 99 3 6 33 6 6 888 6 111 4444444444 6 6 99 4444 6 6 8 8 0 0 0 3 999999999999 99 8 8 99 11 8 8 0 3333 666666666 7777 8 8 0 0 888888888 88 444 0 0 88 11 11 8 8 7777 7777 0 444 0 2 0 0 0 0 33 777 0 88888 666666666 0 3 0 555555 33 0 6 88888 7777 33 0 0 22222222222222222222 777 0 3 2 777 2 66 66 3 111111111111 11 8 5555555555555555555555555555555 222 8 8 999 8 99999999999999999999999999999999999999999999 8 8 11 8 8 1 11 8 0 2 3 9 9 777 33 0 0 3 99 5555555555555 5555 0 3 0 1111
lowQualScore : . . . .. . . . . ... . . . . . ... ... . . . .. . .. ... . . . . . . ..... .... .. . . . . ... . . .. . . . . . .. .. ..... . ....... . ............................................................................ . . .. . .. ....... . .... .. ... ........ . ... . . . .... . .... ....... . . .... . .. . ........... . .. . . .. . . ... . ... .......... . . .. .... . . . . . . . . ............ .. . . .. .. . . . .... ......... .... . . . . ......... .. ... . . .. .. .. . . .... .... . ... . . . . . . .. ... . ..... ......... . . . ...... .. . . ..... .... .. . . .................... ... . . . ... . .. .. . ............ .. . ............................... ... . . ... . ............................................ . . .. . . . .. . . . . . . ... .. . . . .. ............. .... . . . ....
lowQualScore : 6 6 3 66 3 3 3 7 222 3 3 3 6 6 444 444 6 1 6 00 2 11 888 4 4 4 4 4 4 66666 3333 11 4 0 4 0 777 4 7 22 8 0 0 0 0 00 00 22222 8 0000000 7 9999999999999999999999999999999999999999999999999999999999999999999999999999 7 9 99 7 99 6666666 7 1111 88 888 00000000 7 777 7 7 2 4444 7 2222 8888888 8 5 3333 3 00 7 00000000000 7 22 3 7 22 7 7 222 7 777 5555555555 7 7 22 8888 7 7 0 0 8 8 8 8 222222222222 00 0 0 00 00 0 0 8 0000 444444444 0000 0 0 8 8 000000000 88 666 8 8 88 00 00 0 0 0000 0000 0 555 0 5 0 0 0 0 55 555 0 55555 000000000 5 2 0 555555 88 0 5 88888 8888 88 0 0 55555555555555555555 555 0 2 5 555 5 55 55 2 000000000000 00 0 2222222222222222222222222222222 000 0 0 222 0 88888888888888888888888888888888888888888888 0 0 00 0 0 0 44 0 0 0 5 8 8 555 88 0 0 2 22 2222222222222 0000 0 2 0 2222
consensus : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATAAC---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGGATTT--ATTTTGTTCGA-TAAAT----GTGGCCAT-A-----GAGAA-ATTTC-T--TAT-TTTAGGTCCTTT-G----AC-AG--CATAATT-TA--TACA-CTG-AATGATGATAGATTTTC-ATTTCCAAAA-GAG-CAAAAC-GTGTCCATA-T-AAACAT--------T-AAA-AA--CG-TTAGA-TTTTTACA-AA-CT-AATATAATTCATATCCCATTTATATTC--G-------AATTC--TT-TTTA-CAN-T--GA-TGATC-GAGGAA-T--GAAATG---C--A--TTCG----AGGT-AATAATC-GTCGATGATAC----GCTTAGTTGAC-AATAATCAATATAGTTCAACGTCAATA-TTTGGA--CAATGTGCATAAA--TGTA-CAAGCC-CAGTTTATCTGTAATGT----TGT----AAA-TAAN-NAAAATA-AAAGA-TTT-GATACC-AA-TTAATTTGT---AC-TTTTT--A--TTTTGT----CT-A-AAAATAATATTAAATTCAAT-GCC--GC--ACA-AA-TTTTGTTGCCCT---ATGG---AC--ACAT-TG-AAAATCAAG------------GG-----GG---GGGG-TAATTCAAC--AAACA-CCCGN-AATTTTGAA------------GATTC--GT-CCGA-TGAT----------ATGT----------AGCC--AGTC-TTG-GA-G-AATT-T-----GT-----------TAATAT---------TT-T-------TCT-ACC-A--TTT-CT-GACAATAAAAATCCT-TTG-GCAGNTTAGTAAAGATTGTGAATTTAG---GTT--AATGTACA-AT-TTTTA-CTGGACGTAACAT-TA---G--CCTAG---GT-TATT-GA----AGGGGGGGG
Reference ( family-2669 ) : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATAAC---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGGATTT--ATTTTGTTCGA-TAAAT----GTGGCCAT-A-----GAGAATATTTC-T--TAT-TTTAGGTCCTTT-G----AC-AG--CATAATT-TA--TACA-CTG-AATGATGATAGATTTTC-ATTTCCAAAA-GAG-CAAAAC-GTGTCCATA-T-AAACCT--------T-AAA-AA--TG-TTAGA-TTTTTACA-AA-CT-AATATAATTCATATCCCATTTATATTC--G-------AATTC--TT-TTTA-CAN-T--GA-TGATC-GAGGAA-T--GAAATG---C--A--TTCG----AGGT-AATAATC-GTCGATGATAC----GCTTAGTTGAC-AATAATCAATATAGTTCAACGTCAATA-TTTGGA--CAATGTGCATAAA--TGTA-CAAGCC-CAGTTTATCTGTAATGT----TGT----AAA-TAAN-AAAAATA-AAAGA-TTT-GATACC-AA-TTAATTTGT---AC-TTTTT--A--TTTTGT----CT-A-AAAATAGTATTAAATTCAAT-GCC--GC--AC--AA-TTTTGTTGCC-----ATGG---AC--ACAT-TG-AAAATCAA-------------AG-----GG---GGGA-TAATTCAA---AAACA-CCCGG-AATTTTGAA------------GATTC--GT-CCGA-TGAT----------ATGT----------AGCC--NGTC-TTG-GA-G-AATT-T-----GT-----------TAATAT---------TT-T-------TCT-ACC-A--TTT-CT-GACNATAAAAATCCT-TTG-GCGGTTTAGTAAAGATTGTGAATTTAG---GTT--AATGTACA-AT-TTTTA-CTGGACGTAACAT-TA---G--CCTA----GT-TATT-GA----AGGGGGGGG
gi|1 : A-GA-GCCCACCGGAA-AGGGTCAAAATCGGCC-TGGTA---TTT-CATGAAAA---TAAGCT-GAAGAGTAACT-A---AAC--AAA-TAT-GCAATG--ATTTATTATCAATAAT---ACATT-G-T-AG-T-AA--TGT-----ATC--C-AC--AATCAAA-T-GTTA-AAG--TCT--T-GA-G--TCATAACTGAGTTG-TACACGTACA-AACACAATGATCAATTT--GC-GTTTTGGTC-CTTTAAAATAGTCCAAATTGTTGAACTTTGACTCAA----------------------A--------------------T------------------TTTTCAGCTTTGTCCACATCA--AAC--CGAA-------CAAACAC--A-AAA-CTTCTGA--CATTGA-----T--AAAG---AAATGAA-AACTG-CACAAATAA-TGTTG-ATTTCAATTTTTTTCGACTAAAT----GTGGCCAC-GAAGGGGAGAATATTTCGTGATATGTTTAGGTCCTTT-G----A--AG--AATAATT-TA----CA-CTGGAATGGTGATAGATT--C-ATTTCCAAAAAGAGGCAAAAT-GTGTCCATA-T-AAACAT--------T-AAA-AAAATGGTTAGA-TTTTTACA-AA-CT-A-TATAATTGATATCCTATT-ATATTT--GTCCCTTGAATTC--TT-TTTA-CAG-TTGGA-TGATC-GAGGAAATCGGAAATGTGAC--A--TTAAGAATAGGT-TATAATCCGTCGATGATA-----GCT-AGTTGACCAATAATTCATA-AGTTCAACGTCA-TA-TTTTGAGGCAATGTGCATAAA--TGTAACAAGCCACAGTTTATCTGTAATGTATGTTAT----CAA-TAACCAAAAATA-AAA-A-TTTAGATACC-AAATTAATTTGTT--AC-TTGTT--AATTTTTGTTATACA-A-AACATAGTATTAAAT-CAAT-GCCTTGC--AC--AA-TTTTGTTGCCCT---ATGT---AC--ACATGTG-AAATTTAA-------------AAAAAAAGGACCGGGACTAATTCAACAAAAACA-CCGGA-AATTTTGAA------------GATTC--GT-CCGA-TGAT----------AAGTTATATTATTAAGCCTGAGTCTTTG-GA-G-AATTGT-----GT-----------TAATA----------TT-T-------TCT-ACC-ATTTTT-CT-GACAATAAAATTCCTATTG-GCGCGTTAGT--AGATTGTGTATTTAG---GGTGGAATGCACA-ATATTTTA-CTGGACGTAACAT-TATAGG--CCTA----GT-T-TT-GAGGTCAGGGGG
gi|10 : TTTGTTCGA-TGCAT----GTGGCCAA-A-----TGGAA-ATGTC-T--TGT-TTTATGTT-TTC-G----GC-AAA-CGTAATT-TT--TGCT-TCG-AATGATGATAGTTTCCC-ATT---AAAA-AAT-GAACGCTGTCTCCTTA-TAAAATAT--------T-AAACAC--CG-AGAGATTTTTTACA-tattcctatgggcacggaggcaatggcgcctgtccacacttgtttgcggcaaaaaagatagatttgaattgtagagcaaattaaaagggttggctgacaaa
gi|11 : A-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TG-TA---TTTTCATGAAAAA-TTAA-CT-GAT-AGTTAAT-A---AAC--AAA-TATTGCA-TT--AATTACTATCAAT-AC---ATATT-G-T-AC-A-AAA-TTC-----ACCCTC-ATTCA-TTAAAAC-GTTt
gi|12 : TTCAA------------GATTC--AT-GCGA-T-------------ATG-------------CC--AGTT-TTGAGA-G-AATT-T-----GTTAAGGAAGGCATAATAT---------TTATATATTCATCT-ACC-A--TTT-CA-TACCAT-AAAATCCT-Tggttttatttttcaa
gi|13 : A-GA-ATG-AC--GAA-ACG-TCACAATCGGCC-TG-TA---TTTTCAGGAAAAA-TTAA-CT-GAA-AGTTAAC-A---AACATAAA-TA---CA-TGCCAATT
gi|14 : GCCA-GA-GCC-GC--GAA-AGG-TAAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAT---GA-TAT---G-TA--AATGA-TATCActgttatatcttg
gi|15 : TT-------------A----------------------A--------------------A------------------TTTTCAG-TTTGGTCACAACA--A-C--CGAA-------CAAA-ACA-A-AA--CTTC
gi|16 : tggaactttgacTA-GA-GCC-AC--GAA-AGG-TCAAATTCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-
gi|2 : CTATGA-GCAGAC--GAA-AGG-TCAAAATCGGCCCTGGTAATTTTTCCATGAAAAAATTAA-CT-GAA-AGTTAATTC---AAC--AAAATATTGCA-TG--AATT-TTATCAATA-C---ATATT-G-T-AG-T-AAA-TGT-----ATC--AGAT--A-TCAAAAG-TTTATAA---TCTAGT-GACTACTCATAA-TGAGTTG-TACACGT-CACAACACA-TGG-CG--TTTTGCCTTTTG--ATACTTTAAAA-------AAA-GTC-------------AAATCTTTGGAAACTTGACTTAAA--------------------T------------------TTTTCAG-TTTG-CCAC-TCA--A-C--CGAA-------CAAA-ACCAG-AAGACTTCTGA---ATTGAAGGAAC--AT-G---AAATGAATAACTG-CACAAATAAATGTT----------------CAG-TGAAT----GTGGCCAT-A-----GAGAATATTTC-T--TAT-TTTAGGTCTATT-GTACTAT-AG--CATAA---TA--TACAGCTG-AATGATGATAGATTTTCAATTTCCAAAA-GAG-CAACAC-GTGTCCATAGTAAAAGAT--------T---A-AA--CG---AGA-TTTTTACATAACCT-AATATAATTCATATCCCATTTATGTTCTGG-------AATTTG-TT-TTTA-CAA-T--GACTGATCGGAGGAA-C--GGAATA---T--GACTTCG----AGATAAATAATC-G-CGATGA-AT----ACTTAGTTGAC-AATAAC--ATATAGTTCAA--TCAATATTTTGGA--CAATGAGCATAAGATTGTA-CAAGCC-CAGTTTATCTGTAATGT----TGTAATAAAG-TAAA-CAAAATAGAAAGATTTT-GATACCAAA-TTAAATTGTGTAAA-TTTTT--A--ATTTGT----CT-AGAAAATAATATTAAATTAAATAGCC--GTCAACA-AA-TTTTGTTGTCCTGCAATGATACAC--ACAT-TGAAAAATCAAGAAAAAGGGAAGGGG-----GG---GGGG-TAATT--------ACA-TCCGT-AA-TTTGAAAACCGGAAATTGAATTCCAGTCCCGACTAATGTATATATAAATGT----------ACCC--TGTA-TTG-GA-GAAATT-T-----GT-----------AAAT-T---------CT-T-------TCTAACCAA--TTTGCTAGACAA-ATAAATC---TTGTGCAGTTTTGTAAAGATTGTGAATTTAGTTAATT--AATGTACATAT-TTTTACCTGGACGTAG-ATATA---GGTCCTAAGTCGT-TATTGGA----AGGGGGGGG
gi|3 : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-C--GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATAAC---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCAT-ACTGAGTTGATACACGT-CACAACACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACAT-A--A-C--CGAA-------C-AA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGAATTT--A-TTTGTTCGA-TAAAT----GTGGCCAT-A-----GAGAA-A-TTC-T--TAT-TTTAGGTC--TT-G----AC-AG--CATAATT-TA--TACATCTG-AATGATGATAGATTTTC-ATTTCCAAAA-GAG-C-AAAC-GTGTCCAT-----AACTT--------T-AAA-AA--TG-TT-GA-TTTTTGCA-AA-CTAAATATAATTCATATCCCATTTATAT----G-------AATTC--CT-TTTA-CAT-T--GA-TGATC-GAGG-A-T--GAAATG---C--A--TTCG----A-GT-AATAATC-GTTGATGATACATGTACTTAGTTGAC--ATAATCAATATAGTTCAACGTCAATA--TTGGA--CAATGTGCATAAA--TGTA-CAAGCC-CAGTTTATCTGTAATGT----TGT----GAA-TAAC-AAAAATA-AAAGA-TTT-GATACC-AA-TTAATT--T---AC-TTTTTAAA--TATTGT----AT-A-AAAATA-TATCAAATTCAAT-GCT--AC--ACAAAA-TTTTATTG-C-----ATGG---ACCAACAT-TG-AAAATCAAG------------GG-----GG---GGGG-TAATTCAAC--AAACATCCCGGTTATTTTGAA------------GATTC--GT-CC----AAT----------ATGT----------AGCC--TGTC-TTA-GA-A-AATT-T-----G------------TAATAT---------TT-T-------TTT-ACC-A--TTT-CT-GACAATAAAAATCCT-TTG-GCAGATTAGTAAAGATTGTG-ATTTAG---GTT--GATCTACA-AT-TTTT--CTGGACGTAACAT-T----G--CCTA----GTGTATT-GA----AGGGGGGGGggggtattcctatcaagagcacagaggcaatgcatttccaccattgtttggcgtcgaaaaaattaaattttaatttagagtgagagttgaaaatact
gi|4 : -G---AAATGAA-AATTG-CACAAATAAATGTTGGATTT--ATTTTGTTCGA-TAAAT----GTGGCCAT-A-----GAGAA-ATTTC-T--TAT-TTTAGGT-CTTT-G----GCAAG--CATAATT-TA--TACA-CTA-AATGATGATAGATCTTC-ATTTCCAAGA-GAG-C-AAAC-GTGTCCATA-T-AAACAT--------TCAAA-AA--TG-GTAGA-TTTTTACA-AA-CT-AATATGATTCATATCCCATTTAT-TTT--G-------AGTTTTATT-TTTA-CAA-T--GA-TGATC-GGGGAA-T--GGAATG---TGAA--TTCG----AGGT-AATAATC-GTCGATGATAC-------TAGTTGAC-AATAATCA--ATAGTTCAACATCAATA-TTTGGA--CAGTGTGCTTAAA--TATA-CACACC-CAGTTTATATGTAATGT----TGT----AAAGTAAA-TAAAATA-AAAGA-AAT-GATACC-AA-TTAATATAT---ACTTTTTT--A--TTTTGT----CTAA-AAAATAATATTTAATTCAAT-GCC--GC--AC--AACTTTTGTTGCC-----ATGG---AC--ACAA-TG-AAAATCAA-------------AG-----GG---GGGA-T-ATTCAA---AAA-A---CGT-AATTTTGAA------------GATTC--AT-CC----GAT----------ATGT----------AGCC--AGTC-TTG-GAGG-AATT-TGAAAAGT-----------AAACATATACATGTATT-T-------TCT-ACC-A--GTT-CT-GACCAT-AAAATCCT-TTG-GCAGTTTAGTTAAGATTGTGAATTTAG---GTT--AATGTACA-AT-T---------ACATA-----TAG--G--CCTAGT--GT-TATT-AA----AGGAGGGAG
gi|5 : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGACC-TAGTA---TTTTCATGAAAAA-TTAA-CT-GAA-TGTTAAT-ATTAAAC--AA----TTGCC-TG--A-TTAGTATCA-TA-C---ATATTTG-TTAG-T-AAAATGA-----ATC----AT--A-TCACAATTGTTA-AA---TCTCGTTGACG--TCATAACTGAGTTG-TA-ACGT-CACAACACG-TGA-CG--TT--TGCGTTTTT-CT-CTTTAAAA-------ATT-GTA-------------A----------------------AATTTTGGAACTACTTGGACTTACA---------------TTTTCAG-TTTG-CCACATCACCA-CAACGAAATAAAAATAAA-AT--A-AA--CTTCTGAGTTTTTGA-----T--AA-GTAGAAATGAA-AACTGTCACAAATAAATGT-GGATTT--ATTTTGTTTCA-TATATCTCTGTGGCCATTA-----GAGAAAAATTT-C--TATATTTAGGTTCTTTTG----AC-AAGCCATAATTATAATTACA-CTG-AATGATGATAGATTTGC-ATTTCAAAAA-GAG-CAAAAC-GTGTCCATAGT-AAACCTACGATTAAT-AAA-AA--TG-TTGGA-TTTTTA-A-AA-CT-AATATAAT-CATATCCCATTTATATT---G-------AATTC--CTATTTAACATGT--GA-TTATC-GAGGAA-T--GAAACG---C--A--TTCG----AGGT-AATAATC-GTCGATGATAC-------TAGTTGAC-AATAATCAATATAGTTCAACGTCAATA-TTTGGA--CATTGTGCATAAA--TGTA-TAAGCC-CAGTTTATCTGTAATGT----TGT----AAggggtattcagtggcttaaaaattagcttcgtatgaggcatggaggcatgtgctttcacattgttgcggcaaagcatgaaatctaatttagagtcaagttaaaagaatattaggtttacaaaaaaatatgcagtgcctagatattgaaaat
gi|6 : A-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATA-C---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CGT-TT--GCCGTTTT--CT-CTTT-AAA-------AAT-GTCA------------A----------------------A--------------------TTTGGAACTTTGACTTAAATTTTAAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-A
gi|7 : GCTA-GA-GCC-AC--GAA-AGG-CGCATTTTGGCC-TA-TA---TTTACCCGAAAAA-TTAA-AT-GAA-ACTTAAC-A---AAC--AAT-GATTGCA-CT--AAATATCGTC-TTTAC---AAATT-G-T-AG-T-AAA-TGT-----TTT--C-AT--A-TGAAACT-TTTA-A
gi|7 : T-ATC-------------A----------------------A--------------------A------------------ATTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AT--GAAA--ATCCTAG--TATT-A-----TTAAA-G---GGATGAA-AAAGG-CACAGAAATATGATGttttatcaaaatttcagtttggccacatcaaccgaacaaaatgaaaatcctagtattattaaagggatgaaaaaggcacagaaatatgatg
gi|8 : gctagagccacgaaaggcgcattttggcctatatttacccgaaaaattaaatgaaacttaacaaacaatgattgcactaaatatcgtctttacaaattgtagtaaatgttttcatatgaaacttttaattt--GGA-ATG-TCGAAATCGGCA-TG-TA---TTTTCATGAAACA-TTAA-CTGGAA-ACTTCGC-A---AAC----A-TAGTGCA-CT--AAT--------ATAACTTTACACT-GCT-AGTT-AAA-TTTATGCCATT--C-AT--A-TCAAATT-GTCA-A-----CT-AC-GAC
gi|9 : TA-GAAGCC-AC--GAATAGG-T-AAAATCGGCC-TGGTAT--TTTTCATG-AAAA-TTAA-CT-GAA-AGTTAAT-A---AAC---AA-TATTGCA-TG--AATTATTATCAAT-AC---ATATT-G-T-AG-TCAAA-TGTC----ATCA-C-AT--A--CAAAAT-GTTA-AACATTCT-GT-GACG--TCATaaatgtgttctaaatggccatagcattgtaaagttt
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11111 1111 111 1 11 11 11111 2222222 6666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 1111 11 111 22222222 111 1111 1111 222222222 1 11 11 22222222222 1 222 11111 111111 1111 44444444444 11 11 11 222222222 1111 44444444 11 11 1111 1111 1 111 1 1 1 2 2222222 1 11111 222222222 1 111111 11 333333 1111 11 1 1 66666666666666666666 111 111 11 444444444444 11 6666666666666666666666666666666 111 66666666666666666666666666666666666666666666 11 11 1 111 11 1 1 11 4444444444444 3333 1 2222
lowQualScore : 3 3 7 44 3 3 3 6 999 3 3 3 3 3 666 999 3 2 3 55 2 22 777 4 4 4 4 4 4 55555 3333 66 4 2 4 5 555 1 5 99 0 8 8 8 8 99 11 99999 0 6666666 6 6666666666666666666666666666666666666666666666666666666666666666666666666666 5 7 77 5 77 8888888 5 6666 55 444 55555555 6 111 6 6 8 2222 6 4444 111111111 3 6 55 6 33 6 00000000000 6 99 3 6 33 6 6 888 6 111 66666 222222 6 3333 888 6 6 8 88 0 0 3 99999999999 99 8 8 99 11 8 8 88 11 666666666 7777 8 8 0 0 77777777 8 0 444 0 0 88 11 11 8 8 7777 7777 0 222 0 2 0 0 0 2222222 0 88888 666666666 3 3 0 555555 33 111111 7777 33 0 0 44444444444444444444 777 0 3 2 666 2 4 33 1 3 111111111111 11 8 5555555555555555555555555555555 222 8 8 999 8 99999999999999999999999999999999999999999999 8 8 11 8 8 0 11 8 0 1 9 9 777 33 0 0 3 99 5555555555555 4444 3 0 1111
lowQualScore : . . . .. . . . . ... . . . . . ... ... . . . .. . .. ... . . . . . . ..... .... .. . . . . ... . . .. . . . . . .. .. ..... . ....... . ............................................................................ . . .. . .. ....... . .... .. ... ........ . ... . . . .... . .... ......... . . .. . .. . ........... . .. . . .. . . ... . ... ..... ...... . .... ... . . . .. . . . ........... .. . . .. .. . . .. .. ......... .... . . . . ........ . . ... . . .. .. .. . . .... .... . ... . . . . . ....... . ..... ......... . . . ...... .. ...... .... .. . . .................... ... . . . ... . . .. . . ............ .. . ............................... ... . . ... . ............................................ . . .. . . . .. . . . . . ... .. . . . .. ............. .... . . ....
lowQualScore : 6 6 3 66 3 3 3 7 222 3 3 3 6 6 444 444 6 1 6 00 2 11 888 4 4 4 4 4 4 66666 3333 11 4 0 4 0 777 4 7 22 8 0 0 0 0 00 00 22222 8 0000000 7 9999999999999999999999999999999999999999999999999999999999999999999999999999 7 9 99 7 99 6666666 7 1111 88 888 00000000 7 777 7 7 2 4444 7 2222 888888888 3 7 88 7 00 7 00000000000 7 22 3 7 22 7 7 222 7 777 77777 555555 7 8888 222 7 7 0 88 8 8 8 22222222222 00 0 0 00 00 0 0 88 00 444444444 0000 0 0 8 8 00000000 0 8 666 8 8 88 00 00 0 0 0000 0000 0 000 0 5 0 0 0 0000000 0 55555 000000000 2 2 0 555555 22 888888 8888 88 0 0 88888888888888888888 555 2 2 5 222 5 2 88 0 2 000000000000 00 0 2222222222222222222222222222222 444 0 0 222 0 88888888888888888888888888888888888888888888 0 0 00 0 0 6 44 0 0 0 8 8 555 88 0 0 2 22 2222222222222 0000 2 0 2222
consensus : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATAAC---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGGATTT--ATTTTGTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-ATTTC-T--TAT-TTTAGGTCCTTT-G----AC-AG--CATAATT-TA--TACA-CTG-AATGATGATAGATTTTCA-TTTCCAAAA-GAG-CAAAAC-GTGTCCATA-T-AAAC-----ATT-AA---A-AA---CGTTAGA-TTTTTACA-AA-CT-AATATAATTCATATCCCATTTATAT-------TC--GAATTC--TT-TTTA-CAN-T--GA-TGATC-GAGG-AAT--GAAATG---C--A--TTCG----AGGT-AATAAT-CGTCGATGATAC----GCTTAGTTGA-CAATAATCAATATAGTTCAACGTCAATA-TTTGGA--CAATGTGCATAAA--TGT-ACAAGCC-CAGTTTATCTGTA----ATGTTGT----AAA-TAA-NNAAAATA-AAAGA-TTT-GATACCAAATTAATTTG-T---AC-TTTTT--A--TTTTGT----CT-A-AAAATAATATTAAATTCAAT-GCC--GC--AC-AAATTTTGTTGCCCT---ATGG---AC--ACAT-TG-AAAATC-----AA------------GGGG---GGGGGTAATTCAAC--AAACATCC--GTAATTTTGAA------------GATTC--GT-CCGA-TGAT----------ATGT----------AGCC--AGTC-TTG-GA-G-AATT-T-----GT-----------TAATAT---------TT-T-------TCT-ACC-A--TTT-CT-GACAATAAAAATCCT-TTG-GCAGNTTAGTAAAGATTGTGAATTTAG---GTT--AATGTACA-AT-TTTTA-CTGGACGTAACAT-TA---G--CCTAG---GTTATT-GA----AGGGGGGGG
Reference ( family-2669 ) : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATAAC---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGGATTT--ATTTTGTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-ATTTC-T--TAT-TTTAGGTCCTTT-G----AC-AG--CATAATT-TA--TACA-CTG-AATGATGATAGATTTTCA-TTTCCAAAA-GAG-CAAAAC-GTGTCCATA-T-AAAC-----ATT-AA---A-AA---CGTTAGA-TTTTTACA-AA-CT-AATATAATTCATATCCCATTTATAT-------TC--GAATTC--TT-TTTA-CAN-T--GA-TGATC-GAGG-AAT--GAAATG---C--A--TTCG----AGGT-AATAAT-CGTCGATGATAC----GCTTAGTTGA-CAATAATCAATATAGTTCAACGTCAATA-TTTGGA--CAATGTGCATAAA--TGT-ACAAGCC-CAGTTTATCTGTA----ATGTTGT----AAA-TAA-NNAAAATA-AAAGA-TTT-GATACC-AATTAATTTG-T---AC-TTTTT--A--TTTTGT----CT-A-AAAATAATATTAAATTCAAT-GCC--GC--AC-AAATTTTGTTGCCCT---ATGG---AC--ACAT-TG-AAAATC-----AA------------GGGG---GGGGGTAATTCAAC--AAACACCC--GNAATTTTGAA------------GATTC--GT-CCGA-TGAT----------ATGT----------AGCC--AGTC-TTG-GA-G-AATT-T-----GT-----------TAATAT---------TT-T-------TCT-ACC-A--TTT-CT-GACAATAAAAATCCT-TTG-GCAGNTTAGTAAAGATTGTGAATTTAG---GTT--AATGTACA-AT-TTTTA-CTGGACGTAACAT-TA---G--CCTAG---GTTATT-GA----AGGGGGGGG
gi|1 : A-GA-GCCCACCGGAA-AGGGTCAAAATCGGCC-TGGTA---TTT-CATGAAAA---TAAGCT-GAAGAGTAACT-A---AAC--AAA-TAT-GCAATG--ATTTATTATCAATAAT---ACATT-G-T-AG-T-AA--TGT-----ATC--C-AC--AATCAAA-T-GTTA-AAG--TCT--T-GA-G--TCATAACTGAGTTG-TACACGTACA-AACACAATGATCAATTT--GC-GTTTTGGTC-CTTTAAAATAGTCCAAATTGTTGAACTTTGACTCAA----------------------A--------------------T------------------TTTTCAGCTTTGTCCACATCA--AAC--CGAA-------CAAACAC--A-AAA-CTTCTGA--CATTGA-----T--AAAG---AAATGAA-AACTG-CACAAATAA-TGTTG-ATTTCAATTTTTTTCGACTAAAT----GTGGCCAC---GAAGGGGAGAATATTTCGTGATATGTTTAGGTCCTTT-G----A--AG--AATAATT-TA----CA-CTGGAATGGTGATAGATT--CA-TTTCCAAAAAGAGGCAAAAT-GTGTCCATA-T-AAAC-----ATT-AA---A-AAAATGGTTAGA-TTTTTACA-AA-CT--ATATAATTGATATCCTA-TTATATTTGTCCCTT--GAATTC--TT-TTTA-CAG-TTGGA-TGATC-GAGGAAATCGGAAATGTGAC--A--TTAAGAATAGGT-TATAATCCGTCGATGATA-----GC-TAGTTGACCAATAATTCATA-AGTTCAACGTC-ATA-TTTTGAGGCAATGTGCATAAA--TGTAACAAGCCACAGTTTATCTGTAATGTATGTTAT----CAA-TAACCAAAAATA-AAA-A-TTTAGATACCAAATTAATTTGTT---AC-TTGTT--AATTTTTGTTATACA-A-AACATAGTATTAAA-TCAAT-GCCTTGC--AC--AATTTTGTTGCCCT---ATGT---AC--ACATGTG-AAATTTAAAAAAA------------AAGGACCGGGACTAATTCAACAAAAACACCG--GAAATTTTGAA------------GATTC--GT-CCGA-TGAT----------AAGTTATATTATTAAGCCTGAGTCTTTG-GA-G-AATTGT-----GT-----------TAATA----------TT-T-------TCT-ACC-ATTTTT-CT-GACAATAAAATTCCTATTG-GCGCGTTAGT--AGATTGTGTATTTAG---GGTGGAATGCACA-ATATTTTA-CTGGACGTAACAT-TATAGG--CCTA----GTT-TT-GAGGTCAGGGGG
gi|10 : TTTGTTCGA-TGCAT----GTGGCCAA---A-----TGGAA-ATGTC-T--TGT-TTTATGTT-TTC-G----GC-AAA-CGTAATT-TT--TGCT-TCG-AATGATGATAGTTTCCCA-TT---AAAA-AAT-GAACGCTGTCTCCTTA-TAAAAT-----ATT-AA---ACAC---CGAGAGATTTTTTACA-tattcctatgggcacggaggcaatggcgcctgtccacacttgtttgcggcaaaaaagatagatttgaattgtagagcaaattaaaagggttggctgacaaa
gi|11 : A-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TG-TA---TTTTCATGAAAAA-TTAA-CT-GAT-AGTTAAT-A---AAC--AAA-TATTGCA-TT--AATTACTATCAAT-AC---ATATT-G-T-AC-A-AAA-TTC-----ACCCTC-ATTCA-TTAAAAC-GTTt
gi|12 : TTCAA------------GATTC--AT-GCGA-T-------------ATG-------------CC--AGTT-TTGAGA-G-AATT-T-----GTTAAGGAAGGCATAATAT---------TTATATATTCATCT-ACC-A--TTT-CA-TACCAT-AAAATCCT-Tggttttatttttcaa
gi|13 : A-GA-ATG-AC--GAA-ACG-TCACAATCGGCC-TG-TA---TTTTCAGGAAAAA-TTAA-CT-GAA-AGTTAAC-A---AACATAAA-TA---CA-TGCCAATT
gi|14 : GCCA-GA-GCC-GC--GAA-AGG-TAAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAT---GA-TAT---G-TA--AATGA-TATCActgttatatcttg
gi|15 : TT-------------A----------------------A--------------------A------------------TTTTCAG-TTTGGTCACAACA--A-C--CGAA-------CAAA-ACA-A-AA--CTTC
gi|16 : tggaactttgacTA-GA-GCC-AC--GAA-AGG-TCAAATTCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-
gi|2 : CTATGA-GCAGAC--GAA-AGG-TCAAAATCGGCCCTGGTAATTTTTCCATGAAAAAATTAA-CT-GAA-AGTTAATTC---AAC--AAAATATTGCA-TG--AATT-TTATCAATA-C---ATATT-G-T-AG-T-AAA-TGT-----ATC--AGAT--A-TCAAAAG-TTTATAA---TCTAGT-GACTACTCATAA-TGAGTTG-TACACGT-CACAACACA-TGG-CG--TTTTGCCTTTTG--ATACTTTAAAA-------AAA-GTC-------------AAATCTTTGGAAACTTGACTTAAA--------------------T------------------TTTTCAG-TTTG-CCAC-TCA--A-C--CGAA-------CAAA-ACCAG-AAGACTTCTGA---ATTGAAGGAAC--AT-G---AAATGAATAACTG-CACAAATAAATGTT----------------CAG-TGAAT----GTGGCCAT---A-----GAGAATATTTC-T--TAT-TTTAGGTCTATT-GTACTAT-AG--CATAAT---A--TACAGCTG-AATGATGATAGATTTTCAATTTCCAAAA-GAG-CAACAC-GTGTCCATAGTAAAAG-----ATT------A-AA---CG--AGA-TTTTTACATAACCT-AATATAATTCATATCCCATTTATGT-------TCTGGAATTTG-TT-TTTA-CAA-T--GACTGATCGGAGG-AAC--GGAATA---T--GACTTCG----AGATAAATAAT-CG-CGATGA-AT----ACTTAGTTGA-CAATAAC--ATATAGTTCAA--TCAATATTTTGGA--CAATGAGCATAAGATTGT-ACAAGCC-CAGTTTATCTGTA----ATGTTGTAATAAAG-TAA-ACAAAATAGAAAGATTTT-GATACCAAATTAAATTG-TGTAAA-TTTTT--A--ATTTGT----CT-AGAAAATAATATTAAATTAAATAGCC--GTCAAC-AAATTTTGTTGTCCTGCAATGATACAC--ACAT-TGAAAAATC-----AAGAAAAAGGGAAGGGGG---GGGGGTAATT--------ACATCC--GTAA-TTTGAAAACCGGAAATTGAATTCCAGTCCCGACTAATGTATATATAAATGT----------ACCC--TGTA-TTG-GA-GAAATT-T-----GT-----------AAAT-T---------CT-T-------TCTAACCAA--TTTGCTAGACAA-ATAAATC---TTGTGCAGTTTTGTAAAGATTGTGAATTTAGTTAATT--AATGTACATAT-TTTTACCTGGACGTAG-ATATA---GGTCCTAAGTCGTTATTGGA----AGGGGGGGG
gi|3 : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-C--GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATAAC---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCAT-ACTGAGTTGATACACGT-CACAACACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACAT-A--A-C--CGAA-------C-AA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGAATTT--A-TTTGTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-A-TTC-T--TAT-TTTAGGTC--TT-G----AC-AG--CATAATT-TA--TACATCTG-AATGATGATAGATTTTCA-TTTCCAAAA-GAG-C-AAAC-GTGTCCAT-----AAC-----TTT-AA---A-AA---TGTT-GA-TTTTTGCA-AA-CTAAATATAATTCATATCCCATTTATAT-----------GAATTC--CT-TTTA-CAT-T--GA-TGATC-GAGG--AT--GAAATG---C--A--TTCG----A-GT-AATAAT-CGTTGATGATACATGTACTTAGTTGA-C-ATAATCAATATAGTTCAACGTCAATA--TTGGA--CAATGTGCATAAA--TGT-ACAAGCC-CAGTTTATCTGTA----ATGTTGT----GAA-TAA-CAAAAATA-AAAGA-TTT-GATACC-AATTAATT---T---AC-TTTTTAAA--TATTGT----AT-A-AAAAT-ATATCAAATTCAAT-GCT--AC--ACAAAATTTTATTGC------ATGG---ACCAACAT-TG-AAAATC-----AA------------GGGG---GGGGGTAATTCAAC--AAACATCCCGGTTATTTTGAA------------GATTC--GT-CC----AAT----------ATGT----------AGCC--TGTC-TTA-GA-A-AATT-T-----G------------TAATAT---------TT-T-------TTT-ACC-A--TTT-CT-GACAATAAAAATCCT-TTG-GCAGATTAGTAAAGATTGTG-ATTTAG---GTT--GATCTACA-AT-TTTT--CTGGACGTAACAT-T----G--CCTAG---TGTATT-GA----AGGGGGGGGggggtattcctatcaagagcacagaggcaatgcatttccaccattgtttggcgtcgaaaaaattaaattttaatttagagtgagagttgaaaatact
gi|4 : -G---AAATGAA-AATTG-CACAAATAAATGTTGGATTT--ATTTTGTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-ATTTC-T--TAT-TTTAGGT-CTTT-G----GCAAG--CATAATT-TA--TACA-CTA-AATGATGATAGATCTTCA-TTTCCAAGA-GAG-C-AAAC-GTGTCCATA-T-AAAC-----ATTCAA---A-AA---TGGTAGA-TTTTTACA-AA-CT-AATATGATTCATATCCCATTTAT-T-------TT--GAGTTTTATT-TTTA-CAA-T--GA-TGATC-GGGG-AAT--GGAATG---TGAA--TTCG----AGGT-AATAAT-CGTCGATGATAC-------TAGTTGA-CAATAATCA--ATAGTTCAACATCAATA-TTTGGA--CAGTGTGCTTAAA--TAT-ACACACC-CAGTTTATATGTA----ATGTTGT----AAAGTAA-ATAAAATA-AAAGA-AAT-GATACC-AATTAATATA-T---ACTTTTTT--A--TTTTGT----CTAA-AAAATAATATTTAATTCAAT-GCC--GC--AC-AACTTTTGTTGCC-----ATGG---AC--ACAA-TG-AAAATC-----AA-------------AGG---GGGGAT-ATTCAAA--AAA----C--GTAATTTTGAA------------GATTC--AT-CC----GAT----------ATGT----------AGCC--AGTC-TTG-GAGG-AATT-TGAAAAGT-----------AAACATATACATGTATT-T-------TCT-ACC-A--GTT-CT-GACCAT-AAAATCCT-TTG-GCAGTTTAGTTAAGATTGTGAATTTAG---GTT--AATGTACA-AT-T---------ACATA-----TAG--G--CCTAGT--GTTATT-AA----AGGAGGGAG
gi|5 : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGACC-TAGTA---TTTTCATGAAAAA-TTAA-CT-GAA-TGTTAAT-ATTAAAC--AA----TTGCC-TG--A-TTAGTATCA-TA-C---ATATTTG-TTAG-T-AAAATGA-----ATC----AT--A-TCACAATTGTTA-AA---TCTCGTTGACG--TCATAACTGAGTTG-TA-ACGT-CACAACACG-TGA-CG--TT--TGCGTTTTT-CT-CTTTAAAA-------ATT-GTA-------------A----------------------AATTTTGGAACTACTTGGACTTACA---------------TTTTCAG-TTTG-CCACATCACCA-CAACGAAATAAAAATAAA-AT--A-AA--CTTCTGAGTTTTTGA-----T--AA-GTAGAAATGAA-AACTGTCACAAATAAATGT-GGATTT--ATTTTGTTTCA-TATATCTCTGTGGCCATTAGA-----GAAAA-ATTTC-TA-TAT-TT-AGGTTCTTTTG----AC-AAGCCATAATTATAATTACA-CTG-AATGATGATAGATTTGCA-TTTCAAAAA-GAG-CAAAAC-GTGTCCATAGT-AAACCTACGATT-AATAAA-AA---TGTTGGA-TTTTTA-A-AA-CT-AATATAAT-CATATCCCATTTATAT-------T---GAATTC--CTATTTAACATGT--GA-TTATC-GAGG-AAT--GAAACG---C--A--TTCG----AGGT-AATAAT-CGTCGATGATAC-------TAGTTGA-CAATAATCAATATAGTTCAACGTCAATA-TTTGGA--CATTGTGCATAAA--TGT-ATAAGCC-CAGTTTATCTGTA----ATGTTGT----AAggggtattcagtggcttaaaaattagcttcgtatgaggcatggaggcatgtgctttcacattgttgcggcaaagcatgaaatctaatttagagtcaagttaaaagaatattaggtttacaaaaaaatatgcagtgcctagatattgaaaat
gi|6 : A-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATA-C---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CGT-TT--GCCGTTTT--CT-CTTT-AAA-------AAT-GTCA------------A----------------------A--------------------TTTGGAACTTTGACTTAAATTTTAAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-A
gi|7 : GCTA-GA-GCC-AC--GAA-AGG-CGCATTTTGGCC-TA-TA---TTTACCCGAAAAA-TTAA-AT-GAA-ACTTAAC-A---AAC--AAT-GATTGCA-CT--AAATATCGTC-TTTAC---AAATT-G-T-AG-T-AAA-TGT-----TTT--C-AT--A-TGAAACT-TTTA-A
gi|7 : T-ATC-------------A----------------------A--------------------A------------------ATTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AT--GAAA--ATCCTAG--TATT-A-----TTAAA-G---GGATGAA-AAAGG-CACAGAAATATGATGttttatcaaaatttcagtttggccacatcaaccgaacaaaatgaaaatcctagtattattaaagggatgaaaaaggcacagaaatatgatg
gi|8 : gctagagccacgaaaggcgcattttggcctatatttacccgaaaaattaaatgaaacttaacaaacaatgattgcactaaatatcgtctttacaaattgtagtaaatgttttcatatgaaacttttaattt--GGA-ATG-TCGAAATCGGCA-TG-TA---TTTTCATGAAACA-TTAA-CTGGAA-ACTTCGC-A---AAC----A-TAGTGCA-CT--AAT--------ATAACTTTACACT-GCT-AGTT-AAA-TTTATGCCATT--C-AT--A-TCAAATT-GTCA-A-----CT-AC-GAC
gi|9 : TA-GAAGCC-AC--GAATAGG-T-AAAATCGGCC-TGGTAT--TTTTCATG-AAAA-TTAA-CT-GAA-AGTTAAT-A---AAC---AA-TATTGCA-TG--AATTATTATCAAT-AC---ATATT-G-T-AG-TCAAA-TGTC----ATCA-C-AT--A--CAAAAT-GTTA-AACATTCT-GT-GACG--TCATaaatgtgttctaaatggccatagcattgtaaagttt
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11111 1111 111 1 11 11 11111 2222222 6666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 1111 11 111 22222222 111 1111 1111 222222222 1 11 11 22222222222 1 222 11111 111111 1111 44444444444 11 11 11 222222222 1111 44444444 11 11 1111 1111 1 111 1 1 1 1 2222222 1 11111 222222222 1 111111 11 333333 1111 11 1 1 66666666666666666666 111 111 11 444444444444 11 6666666666666666666666666666666 111 66666666666666666666666666666666666666666666 11 11 1 111 11 1 1 11 4444444444444 3333 1 2222
lowQualScore : 3 3 7 44 3 3 3 6 999 3 3 3 3 3 666 999 3 2 3 55 2 22 777 4 4 4 4 4 4 55555 3333 66 4 2 4 5 555 1 5 99 0 8 8 8 8 99 11 99999 0 6666666 6 6666666666666666666666666666666666666666666666666666666666666666666666666666 5 7 77 5 77 8888888 5 6666 55 444 55555555 6 111 6 6 8 2222 6 4444 111111111 3 6 55 6 33 6 00000000000 6 99 3 6 33 6 6 888 6 111 66666 222222 6 3333 888 6 6 8 88 0 0 3 99999999999 99 8 8 99 11 8 8 88 11 666666666 7777 8 8 0 0 77777777 8 0 444 0 0 88 11 11 8 8 7777 7777 0 222 0 2 0 0 5 2222222 0 88888 666666666 3 3 0 555555 33 111111 7777 33 0 0 44444444444444444444 777 0 3 2 666 2 0 33 3 111111111111 11 8 5555555555555555555555555555555 222 8 8 999 8 99999999999999999999999999999999999999999999 8 8 11 8 8 0 11 8 0 1 9 9 777 33 0 0 3 99 5555555555555 4444 3 0 1111
lowQualScore : . . . .. . . . . ... . . . . . ... ... . . . .. . .. ... . . . . . . ..... .... .. . . . . ... . . .. . . . . . .. .. ..... . ....... . ............................................................................ . . .. . .. ....... . .... .. ... ........ . ... . . . .... . .... ......... . . .. . .. . ........... . .. . . .. . . ... . ... ..... ...... . .... ... . . . .. . . . ........... .. . . .. .. . . .. .. ......... .... . . . . ........ . . ... . . .. .. .. . . .... .... . ... . . . . . ....... . ..... ......... . . . ...... .. ...... .... .. . . .................... ... . . . ... . . .. . ............ .. . ............................... ... . . ... . ............................................ . . .. . . . .. . . . . . ... .. . . . .. ............. .... . . ....
lowQualScore : 6 6 3 66 3 3 3 7 222 3 3 3 6 6 444 444 6 1 6 00 2 11 888 4 4 4 4 4 4 66666 3333 11 4 0 4 0 777 4 7 22 8 0 0 0 0 00 00 22222 8 0000000 7 9999999999999999999999999999999999999999999999999999999999999999999999999999 7 9 99 7 99 6666666 7 1111 88 888 00000000 7 777 7 7 2 4444 7 2222 888888888 3 7 88 7 00 7 00000000000 7 22 3 7 22 7 7 222 7 777 77777 555555 7 8888 222 7 7 0 88 8 8 8 22222222222 00 0 0 00 00 0 0 88 00 444444444 0000 0 0 8 8 00000000 0 8 666 8 8 88 00 00 0 0 0000 0000 0 000 0 5 0 0 5 0000000 0 55555 000000000 2 2 0 555555 22 888888 8888 88 0 0 88888888888888888888 555 2 2 5 222 5 8 88 2 000000000000 00 0 2222222222222222222222222222222 444 0 0 222 0 88888888888888888888888888888888888888888888 0 0 00 0 0 6 44 0 0 0 8 8 555 88 0 0 2 22 2222222222222 0000 2 0 2222
consensus : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATAAC---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGGATTT--ATTTTGTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-ATTTC-T--TAT-TTTAGGTCCTTT-G----AC-AG--CATAATT-TA--TACA-CTG-AATGATGATAGATTTTCA-TTTCCAAAA-GAG-CAAAAC-GTGTCCATA-T-AAAC-----ATT-AA---A-AA---CGTTAGA-TTTTTACA-AA-CT-AATATAATTCATATCCCATTTATAT-------TC--GAATTC--TT-TTTA-CAN-T--GA-TGATC-GAGG-AAT--GAAATG---C--A--TTCG----AGGT-AATAAT-CGTCGATGATAC----GCTTAGTTGA-CAATAATCAATATAGTTCAACGTCAATA-TTTGGA--CAATGTGCATAAA--TGT-ACAAGCC-CAGTTTATCTGTA----ATGTTGT----AAA-TAA-NNAAAATA-AAAGA-TTT-GATACCAAATTAATTTG-T---AC-TTTTT--A--TTTTGT----CT-A-AAAATAATATTAAATTCAAT-GCC--GC--AC-AAATTTTGTTGCCCT---ATGG---AC--ACAT-TG-AAAATC-----AA------------GGGG---GGGGGTAATTCAAC--AAACATCC--GTAATTTTGAA------------GATTC--GT-CCGA-TGAT----------ATGT----------AGCC--AGTC-TTG-GA-G-AATT-T-----GT-----------TAATAT---------TT-T-------TCT-ACC-A--TTT-CT-GACAATAAAAATCCT-TTG-GCAGNTTAGTAAAGATTGTGAATTTAG---GTT--AATGTACA-AT-TTTTA-CTGGACGTAACAT-TA---G--CCTAG---GTTATT-GA----AGGGGGGGG
Reference ( family-2669 ) : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATAAC---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGGATTT--ATTTTGTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-ATTTC-T--TAT-TTTAGGTCCTTT-G----AC-AG--CATAATT-TA--TACA-CTG-AATGATGATAGATTTTCA-TTTCCAAAA-GAG-CAAAAC-GTGTCCATA-T-AAAC-----ATT-AA---A-AA---CGTTAGA-TTTTTACA-AA-CT-AATATAATTCATATCCCATTTATAT-------TC--GAATTC--TT-TTTA-CAN-T--GA-TGATC-GAGG-AAT--GAAATG---C--A--TTCG----AGGT-AATAAT-CGTCGATGATAC----GCTTAGTTGA-CAATAATCAATATAGTTCAACGTCAATA-TTTGGA--CAATGTGCATAAA--TGT-ACAAGCC-CAGTTTATCTGTA----ATGTTGT----AAA-TAA-NNAAAATA-AAAGA-TTT-GATACCAAATTAATTTG-T---AC-TTTTT--A--TTTTGT----CT-A-AAAATAATATTAAATTCAAT-GCC--GC--AC-AAATTTTGTTGCCCT---ATGG---AC--ACAT-TG-AAAATC-----AA------------GGGG---GGGGGTAATTCAAC--AAACATCC--GTAATTTTGAA------------GATTC--GT-CCGA-TGAT----------ATGT----------AGCC--AGTC-TTG-GA-G-AATT-T-----GT-----------TAATAT---------TT-T-------TCT-ACC-A--TTT-CT-GACAATAAAAATCCT-TTG-GCAGNTTAGTAAAGATTGTGAATTTAG---GTT--AATGTACA-AT-TTTTA-CTGGACGTAACAT-TA---G--CCTAG---GTTATT-GA----AGGGGGGGG
gi|1 : A-GA-GCCCACCGGAA-AGGGTCAAAATCGGCC-TGGTA---TTT-CATGAAAA---TAAGCT-GAAGAGTAACT-A---AAC--AAA-TAT-GCAATG--ATTTATTATCAATAAT---ACATT-G-T-AG-T-AA--TGT-----ATC--C-AC--AATCAAA-T-GTTA-AAG--TCT--T-GA-G--TCATAACTGAGTTG-TACACGTACA-AACACAATGATCAATTT--GC-GTTTTGGTC-CTTTAAAATAGTCCAAATTGTTGAACTTTGACTCAA----------------------A--------------------T------------------TTTTCAGCTTTGTCCACATCA--AAC--CGAA-------CAAACAC--A-AAA-CTTCTGA--CATTGA-----T--AAAG---AAATGAA-AACTG-CACAAATAA-TGTTG-ATTTCAATTTTTTTCGACTAAAT----GTGGCCAC---GAAGGGGAGAATATTTCGTGATATGTTTAGGTCCTTT-G----A--AG--AATAATT-TA----CA-CTGGAATGGTGATAGATT--CA-TTTCCAAAAAGAGGCAAAAT-GTGTCCATA-T-AAAC-----ATT-AA---A-AAAATGGTTAGA-TTTTTACA-AA-CT--ATATAATTGATATCCTA-TTATATTTGTCCCTT--GAATTC--TT-TTTA-CAG-TTGGA-TGATC-GAGGAAATCGGAAATGTGAC--A--TTAAGAATAGGT-TATAATCCGTCGATGATA-----GC-TAGTTGACCAATAATTCATA-AGTTCAACGTC-ATA-TTTTGAGGCAATGTGCATAAA--TGTAACAAGCCACAGTTTATCTGTAATGTATGTTAT----CAA-TAACCAAAAATA-AAA-A-TTTAGATACCAAATTAATTTGTT---AC-TTGTT--AATTTTTGTTATACA-A-AACATAGTATTAAA-TCAAT-GCCTTGC--AC--AATTTTGTTGCCCT---ATGT---AC--ACATGTG-AAATTTAAAAAAA------------AAGGACCGGGACTAATTCAACAAAAACACCG--GAAATTTTGAA------------GATTC--GT-CCGA-TGAT----------AAGTTATATTATTAAGCCTGAGTCTTTG-GA-G-AATTGT-----GT-----------TAATA----------TT-T-------TCT-ACC-ATTTTT-CT-GACAATAAAATTCCTATTG-GCGCGTTAGT--AGATTGTGTATTTAG---GGTGGAATGCACA-ATATTTTA-CTGGACGTAACAT-TATAGG--CCTA----GTT-TT-GAGGTCAGGGGG
gi|10 : TTTGTTCGA-TGCAT----GTGGCCAA---A-----TGGAA-ATGTC-T--TGT-TTTATGTT-TTC-G----GC-AAA-CGTAATT-TT--TGCT-TCG-AATGATGATAGTTTCCCA-TT---AAAA-AAT-GAACGCTGTCTCCTTA-TAAAAT-----ATT-AA---ACAC---CGAGAGATTTTTTACA-tattcctatgggcacggaggcaatggcgcctgtccacacttgtttgcggcaaaaaagatagatttgaattgtagagcaaattaaaagggttggctgacaaa
gi|11 : A-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TG-TA---TTTTCATGAAAAA-TTAA-CT-GAT-AGTTAAT-A---AAC--AAA-TATTGCA-TT--AATTACTATCAAT-AC---ATATT-G-T-AC-A-AAA-TTC-----ACCCTC-ATTCA-TTAAAAC-GTTt
gi|12 : TTCAA------------GATTC--AT-GCGA-T-------------ATG-------------CC--AGTT-TTGAGA-G-AATT-T-----GTTAAGGAAGGCATAATAT---------TTATATATTCATCT-ACC-A--TTT-CA-TACCAT-AAAATCCT-Tggttttatttttcaa
gi|13 : A-GA-ATG-AC--GAA-ACG-TCACAATCGGCC-TG-TA---TTTTCAGGAAAAA-TTAA-CT-GAA-AGTTAAC-A---AACATAAA-TA---CA-TGCCAATT
gi|14 : GCCA-GA-GCC-GC--GAA-AGG-TAAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAT---GA-TAT---G-TA--AATGA-TATCActgttatatcttg
gi|15 : TT-------------A----------------------A--------------------A------------------TTTTCAG-TTTGGTCACAACA--A-C--CGAA-------CAAA-ACA-A-AA--CTTC
gi|16 : tggaactttgacTA-GA-GCC-AC--GAA-AGG-TCAAATTCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-
gi|2 : CTATGA-GCAGAC--GAA-AGG-TCAAAATCGGCCCTGGTAATTTTTCCATGAAAAAATTAA-CT-GAA-AGTTAATTC---AAC--AAAATATTGCA-TG--AATT-TTATCAATA-C---ATATT-G-T-AG-T-AAA-TGT-----ATC--AGAT--A-TCAAAAG-TTTATAA---TCTAGT-GACTACTCATAA-TGAGTTG-TACACGT-CACAACACA-TGG-CG--TTTTGCCTTTTG--ATACTTTAAAA-------AAA-GTC-------------AAATCTTTGGAAACTTGACTTAAA--------------------T------------------TTTTCAG-TTTG-CCAC-TCA--A-C--CGAA-------CAAA-ACCAG-AAGACTTCTGA---ATTGAAGGAAC--AT-G---AAATGAATAACTG-CACAAATAAATGTT----------------CAG-TGAAT----GTGGCCAT---A-----GAGAATATTTC-T--TAT-TTTAGGTCTATT-GTACTAT-AG--CATAAT---A--TACAGCTG-AATGATGATAGATTTTCAATTTCCAAAA-GAG-CAACAC-GTGTCCATAGTAAAAG-----ATT------A-AA---CG--AGA-TTTTTACATAACCT-AATATAATTCATATCCCATTTATGT-------TCTGGAATTTG-TT-TTTA-CAA-T--GACTGATCGGAGG-AAC--GGAATA---T--GACTTCG----AGATAAATAAT-CG-CGATGA-AT----ACTTAGTTGA-CAATAAC--ATATAGTTCAA--TCAATATTTTGGA--CAATGAGCATAAGATTGT-ACAAGCC-CAGTTTATCTGTA----ATGTTGTAATAAAG-TAA-ACAAAATAGAAAGATTTT-GATACCAAATTAAATTG-TGTAAA-TTTTT--A--ATTTGT----CT-AGAAAATAATATTAAATTAAATAGCC--GTCAAC-AAATTTTGTTGTCCTGCAATGATACAC--ACAT-TGAAAAATC-----AAGAAAAAGGGAAGGGGG---GGGGGTAATT--------ACATCC--GTAA-TTTGAAAACCGGAAATTGAATTCCAGTCCCGACTAATGTATATATAAATGT----------ACCC--TGTA-TTG-GA-GAAATT-T-----GT-----------AAAT-T---------CT-T-------TCTAACCAA--TTTGCTAGACAA-ATAAATC---TTGTGCAGTTTTGTAAAGATTGTGAATTTAGTTAATT--AATGTACATAT-TTTTACCTGGACGTAG-ATATA---GGTCCTAAGTCGTTATTGGA----AGGGGGGGG
gi|3 : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-C--GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATAAC---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCAT-ACTGAGTTGATACACGT-CACAACACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACAT-A--A-C--CGAA-------C-AA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGAATTT--A-TTTGTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-A-TTC-T--TAT-TTTAGGTC--TT-G----AC-AG--CATAATT-TA--TACATCTG-AATGATGATAGATTTTCA-TTTCCAAAA-GAG-C-AAAC-GTGTCCAT-----AAC-----TTT-AA---A-AA---TGTT-GA-TTTTTGCA-AA-CTAAATATAATTCATATCCCATTTATAT-----------GAATTC--CT-TTTA-CAT-T--GA-TGATC-GAGG--AT--GAAATG---C--A--TTCG----A-GT-AATAAT-CGTTGATGATACATGTACTTAGTTGA-C-ATAATCAATATAGTTCAACGTCAATA--TTGGA--CAATGTGCATAAA--TGT-ACAAGCC-CAGTTTATCTGTA----ATGTTGT----GAA-TAA-CAAAAATA-AAAGA-TTT-GATACC-AATTAATT---T---AC-TTTTTAAA--TATTGT----AT-A-AAAAT-ATATCAAATTCAAT-GCT--AC--ACAAAATTTTATTGC------ATGG---ACCAACAT-TG-AAAATC-----AA------------GGGG---GGGGGTAATTCAAC--AAACATCCCGGTTATTTTGAA------------GATTC--GT-CC----AAT----------ATGT----------AGCC--TGTC-TTA-GA-A-AATT-T-----G------------TAATAT---------TT-T-------TTT-ACC-A--TTT-CT-GACAATAAAAATCCT-TTG-GCAGATTAGTAAAGATTGTG-ATTTAG---GTT--GATCTACA-AT-TTTT--CTGGACGTAACAT-T----G--CCTAG---TGTATT-GA----AGGGGGGGGggggtattcctatcaagagcacagaggcaatgcatttccaccattgtttggcgtcgaaaaaattaaattttaatttagagtgagagttgaaaatact
gi|4 : -G---AAATGAA-AATTG-CACAAATAAATGTTGGATTT--ATTTTGTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-ATTTC-T--TAT-TTTAGGT-CTTT-G----GCAAG--CATAATT-TA--TACA-CTA-AATGATGATAGATCTTCA-TTTCCAAGA-GAG-C-AAAC-GTGTCCATA-T-AAAC-----ATTCAA---A-AA---TGGTAGA-TTTTTACA-AA-CT-AATATGATTCATATCCCATTTAT-T-------TT--GAGTTTTATT-TTTA-CAA-T--GA-TGATC-GGGG-AAT--GGAATG---TGAA--TTCG----AGGT-AATAAT-CGTCGATGATAC-------TAGTTGA-CAATAATCA--ATAGTTCAACATCAATA-TTTGGA--CAGTGTGCTTAAA--TAT-ACACACC-CAGTTTATATGTA----ATGTTGT----AAAGTAA-ATAAAATA-AAAGA-AAT-GATACC-AATTAATATA-T---ACTTTTTT--A--TTTTGT----CTAA-AAAATAATATTTAATTCAAT-GCC--GC--AC-AACTTTTGTTGCC-----ATGG---AC--ACAA-TG-AAAATC-----AA-------------AGG---GGGGAT-ATTCAAA--AAA----C--GTAATTTTGAA------------GATTC--AT-CC----GAT----------ATGT----------AGCC--AGTC-TTG-GAGG-AATT-TGAAAAGT-----------AAACATATACATGTATT-T-------TCT-ACC-A--GTT-CT-GACCAT-AAAATCCT-TTG-GCAGTTTAGTTAAGATTGTGAATTTAG---GTT--AATGTACA-AT-T---------ACATA-----TAG--G--CCTAGT--GTTATT-AA----AGGAGGGAG
gi|5 : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGACC-TAGTA---TTTTCATGAAAAA-TTAA-CT-GAA-TGTTAAT-ATTAAAC--AA----TTGCC-TG--A-TTAGTATCA-TA-C---ATATTTG-TTAG-T-AAAATGA-----ATC----AT--A-TCACAATTGTTA-AA---TCTCGTTGACG--TCATAACTGAGTTG-TA-ACGT-CACAACACG-TGA-CG--TT--TGCGTTTTT-CT-CTTTAAAA-------ATT-GTA-------------A----------------------AATTTTGGAACTACTTGGACTTACA---------------TTTTCAG-TTTG-CCACATCACCA-CAACGAAATAAAAATAAA-AT--A-AA--CTTCTGAGTTTTTGA-----T--AA-GTAGAAATGAA-AACTGTCACAAATAAATGT-GGATTT--ATTTTGTTTCA-TATATCTCTGTGGCCATTAGA-----GAAAA-ATTTC-TA-TAT-TT-AGGTTCTTTTG----AC-AAGCCATAATTATAATTACA-CTG-AATGATGATAGATTTGCA-TTTCAAAAA-GAG-CAAAAC-GTGTCCATAGT-AAACCTACGATT-AATAAA-AA---TGTTGGA-TTTTTA-A-AA-CT-AATATAAT-CATATCCCATTTATAT-------T---GAATTC--CTATTTAACATGT--GA-TTATC-GAGG-AAT--GAAACG---C--A--TTCG----AGGT-AATAAT-CGTCGATGATAC-------TAGTTGA-CAATAATCAATATAGTTCAACGTCAATA-TTTGGA--CATTGTGCATAAA--TGT-ATAAGCC-CAGTTTATCTGTA----ATGTTGT----AAggggtattcagtggcttaaaaattagcttcgtatgaggcatggaggcatgtgctttcacattgttgcggcaaagcatgaaatctaatttagagtcaagttaaaagaatattaggtttacaaaaaaatatgcagtgcctagatattgaaaat
gi|6 : A-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATA-C---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CGT-TT--GCCGTTTT--CT-CTTT-AAA-------AAT-GTCA------------A----------------------A--------------------TTTGGAACTTTGACTTAAATTTTAAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-A
gi|7 : GCTA-GA-GCC-AC--GAA-AGG-CGCATTTTGGCC-TA-TA---TTTACCCGAAAAA-TTAA-AT-GAA-ACTTAAC-A---AAC--AAT-GATTGCA-CT--AAATATCGTC-TTTAC---AAATT-G-T-AG-T-AAA-TGT-----TTT--C-AT--A-TGAAACT-TTTA-A
gi|7 : T-ATC-------------A----------------------A--------------------A------------------ATTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AT--GAAA--ATCCTAG--TATT-A-----TTAAA-G---GGATGAA-AAAGG-CACAGAAATATGATGttttatcaaaatttcagtttggccacatcaaccgaacaaaatgaaaatcctagtattattaaagggatgaaaaaggcacagaaatatgatg
gi|8 : gctagagccacgaaaggcgcattttggcctatatttacccgaaaaattaaatgaaacttaacaaacaatgattgcactaaatatcgtctttacaaattgtagtaaatgttttcatatgaaacttttaattt--GGA-ATG-TCGAAATCGGCA-TG-TA---TTTTCATGAAACA-TTAA-CTGGAA-ACTTCGC-A---AAC----A-TAGTGCA-CT--AAT--------ATAACTTTACACT-GCT-AGTT-AAA-TTTATGCCATT--C-AT--A-TCAAATT-GTCA-A-----CT-AC-GAC
gi|9 : TA-GAAGCC-AC--GAATAGG-T-AAAATCGGCC-TGGTAT--TTTTCATG-AAAA-TTAA-CT-GAA-AGTTAAT-A---AAC---AA-TATTGCA-TG--AATTATTATCAAT-AC---ATATT-G-T-AG-TCAAA-TGTC----ATCA-C-AT--A--CAAAAT-GTTA-AACATTCT-GT-GACG--TCATaaatgtgttctaaatggccatagcattgtaaagttt
blockSeqs : T A G . T . C G ATT A . G . T TTA ATA A T . CC C AA TTT T C T T C A ATGCC CTC TC . A T T CAT A T AC A . . . T TT ATA . . AAATTTTGGAACTACTTGGACTTACA . G CC . AA ATAAAAA . CAG GA GTT AGGAAC . TAG T T A AT . CTCT TAGA T . A . CT T TACTATAG A AT G . CC A . GA T GTA CTACG AATAA C C AGA T T C AA G TCTG TA A A TG . C G A . TGAC . A . CATGTACT . CAA TT . AT . . . AATA G AC G G T . A TGTGTA T AAA CTAG A T A GTCA AA CCTGCA ATAC CA . A AAGAAAAAGGGAAGG . A C C C CG T AACCGGAAATTG CA C GACTAATGTATATATAAATGT A . A GA . GTTAAGGAAGGCATAATATTTATATATTCA A A . G A TA . T T A A TTA . T . T AC GATATAGGT AGTC A G .
blockSeqs : . . . . . . . G T . . . . . . A . T . . T TA . . . . . . . C AG . . A . . . C . . . . . . . . TCT . . AAATCTTTGGAAACTTGACTTAAAT . G . . . . . AA . T TTA . . . . G AT . . A . . . . TC . ACAAGC . . T . TT . . CA . TA . CAA . C GTA . . . A A TT G . . A . . . A . TGAA . . . TACT . CAA T . . . . . . . CA . G . . . TAT . A CTAA A T . AC A C G . . . AAG . A C A C . T . . . AATATGT T . . GG . GAAAAGTAAACATATACATGTATTT . . . . . T . . A A A . . . . T . ACATTG GT A . .
blockSeqs : . . . . . . . G . . . . . . . A . T . . T AA . . . . . . . . AC . . A . . . . . . . . . . . . CT . . AAATTTGGAACTTTGACTTAAA . G . . . . . GA . T T . . . . G A . . A . . . . T . GCAAA . . . . TT . . CA . GT . AA . T TTG . . . A A T . . . T . . . A . CA . . . C . CA T . . . . . . . AT . G . . . T . A ATA . T . GC A . G . . . AA . . . . . . . . . . GATATGT T . . G . GTAAATTCTT . . . . . A . . T T . . . . . . . TAGG G A . .
blockSeqs : . . . . . . . G . . . . . . . A . T . . G A . . . . . . . . C . . A . . . . . . . . . . . . CT . . AAA . G . . . . . G . . T . . . . . . . . A . . . . C . GCAAG . . . . TT . . C . T . AA . T TT . . . A . . . . . A . . . . . CA . . . C . A . . . . . . . . . . GATATG A . . A . GTAATATTTT . . . . . T .
blockSeqs : . . . . . . . G . . . . . . . A . T . . T A . . . . . . . . C . . A . . . . . . . AAT . . . . . . . A . . . . . . . A . . . . C . ACAG . . . . TG . . C . . . . . T A . .
blockSeqs : . . . . . . . G . . . . . . . A . T . . T A . . . . . . . . C . . C . . . . . AAA . . . . . . . G
blockSeqs : . . . . . . . G . . . . . . . A . T . . T A . . . . . . . . C . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . A . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : ** A* *** ** CT*** ******* ** A*** A******** ** C* ACAAG****** TT CA* T** T*** A* T********** ** A* ** CA******* **** C******* ** **** GATATGT************************ N** GG* ** T*
originalCons : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATAAC---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGGATTT--ATTTTGTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-ATTTC-T--TAT-TTTAGGTCCTTT-G----AC-AG--CATAATT-TA--TACA-CTG-AATGATGATAGATTTTCA-TTTCCAAAA-GAG-CAAAAC-GTGTCCATA-T-AAAC-----ATT-AA---A-AA---CGTTAGA-TTTTTACA-AA-CT-AATATAATTCATATCCCATTTATAT-------TC--GAATTC--TT-TTTA-CAN-T--GA-TGATC-GAGG-AAT--GAAATG---C--A--TTCG----AGGT-AATAAT-CGTCGATGATAC----GCTTAGTTGA-CAATAATCAATATAGTTCAACGTCAATA-TTTGGA--CAATGTGCATAAA--TGT-ACAAGCC-CAGTTTATCTGTA----ATGTTGT----AAA-TAA-NNAAAATA-AAAGA-TTT-GATACCAAATTAATTTG-T---AC-TTTTT--A--TTTTGT----CT-A-AAAATAATATTAAATTCAAT-GCC--GC--AC-AAATTTTGTTGCCCT---ATGG---AC--ACAT-TG-AAAATC-----AA------------GGGG---GGGGGTAATTCAAC--AAACATCC--GTAATTTTGAA------------GATTC--GT-CCGA-TGAT----------ATGT----------AGCC--AGTC-TTG-GA-G-AATT-T-----GT-----------TAATAT---------TT-T-------TCT-ACC-A--TTT-CT-GACAATAAAAATCCT-TTG-GCAGNTTAGTAAAGATTGTGAATTTAG---GTT--AATGTACA-AT-TTTTA-CTGGACGTAACAT-TA---G--CCTAG---GTTATT-GA----AGGGGGGGG
finalCons : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATA-C---ATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CG--TT--GCCGTTTTCT---CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGGATTTA---TTTGTTCGA-TAAAT----GTGGCCATA--------GAGAA-ATTTC-T--TAT-TTTAGGTC-TTT-GACAAG------CATAATT-TA--TACA-CTG-AATGATGATAGATTTTCA-TTTCCAAAA-GAGCA-AAAC-GTGTCCATAT--AAAC-----ATT-AA---A-AAT---GTTAGA-TTTTTACA-AA-CTA-ATATAATTCATATCCCATTTATATT----------GAATTC--TT-TTTA-CAN-T--GA-TGATC-GAGGA-AT--GAAATGCA-------TTCG----AGGT-AATAAT-CGTCGATGATAC-------TAGTTGA-CAATAATCAATATAGTTCAACGTCAATA-TTTGGA--CAATGTGCATAAA--TGT-ACAAGCC-CAGTTTATCTGTA----ATGTTGT----AAA-TAA-NNAAAATA-AAAGA-TTT-GATACCAAATTAATTTG-T---AC-TTTTT--A--TTTTGT----CT-A-AAAATAATATTAAATTCAAT-GCC--GC--AC-AAATTTTGTTGCCCT---ATGG---AC--ACAT-TG-AAAATC-----AA------------GGGG---GGGGGTAATTCAAC--AAACATCC--GTAATTTTGAA------------GATTC--GT-CCGATATGT------------------------AGCCN--GTC-TTG-GAGG-AATT-T-----GT-----------TAATAT---------TT-T-------TCT-ACC-A--TTT-CT-GACAAT-AAAATCCT-TTG-GCAGNTTAGTAAAGATTGTGAATTTAG---GTT--AATGTACA-AT-TTTTA-CTGGACGTAACAT-TA---G--CCTAG---GTTATT-GA----AGGGGGGGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 1111 111 1 11 11 11111 2222222 6666666666666666666666666666666666666666666666666666666666666666666666666666 1111111 1111 11 111 22222222 111 1 1111 222222222 1 11 2222 111111 1 111 22222 111111111111111 44444444 11 11 1111 222222222 1111 2222222 11 11 1111 1111 1 1 1 1 1 1 222 1 11111 222222222 1 111111 1 333333 1111 11 1 1 8888888888888888888 111 222222222 444444444444 11 77777777777777 222222 11 666666666666666666666666666666666666666666666 11 1 111 11 1 1 11 4444444444444 3333 1 2222
lowQualScore : 3 3 7 44 3 3 3 6 999 3 3 3 3 3 666 999 3 2 3 55 2 2 4 4 4 4 4 4 4 4 55555 3333 66 4 2 4 5 555 1 5 99 0 8 8 8 8 99 11 99999 0 6666666 6 6666666666666666666666666666666666666666666666666666666666666666666666666666 5 7 77 5 77 8888888 5 6666 55 444 55555555 6 111 6 6 22 99 3 6 4444 111111111 3 6 55 6 1111 777777 6 6 99 3 6 33 6 6 888 6 555 33333 6 777777777777777 6 6 8 8 0 0 0 0 33333333 99 8 8 99 11 8 8 0 3333 666666666 7777 8 8 0 8 8 6666666 8 88 444 0 0 0 8 11 11 8 8 7777 7777 0 22 0 0 2 0 0 5 33 777 0 88888 666666666 3 3 0 555555 0 9 111111 7777 33 0 0 0000000000000000000 777 0 3 2 2 000000000 3 111111111111 11 8 66666666666666 000000 1 11 6 8 000000000000000000000000000000000000000000000 8 8 99 8 0 8 8 8 0 1 3 9 777 33 0 0 3 99 5555555555555 4444 3 0 1111
lowQualScore : . . . .. . . . . ... . . . . . ... ... . . . .. . . . . . . . . . . ..... .... .. . . . . ... . . .. . . . . . .. .. ..... . ....... . ............................................................................ . . .. . .. ....... . .... .. ... ........ . ... . . .. .. . . .... ......... . . .. . .... ...... . . .. . . .. . . ... . ... ..... . ............... . . . . . . . . ........ .. . . .. .. . . . .... ......... .... . . . . . ....... . .. ... . . . . .. .. . . .... .... . .. . . . . . . .. ... . ..... ......... . . . ...... . . ...... .... .. . . ................... ... . . . . ......... . ............ .. . .............. ...... . .. . . ............................................. . . .. . . . . . . . . . ... .. . . . .. ............. .... . . ....
lowQualScore : 6 6 3 66 3 3 3 7 222 3 3 3 6 6 444 444 6 1 6 00 2 0 4 4 4 4 4 4 4 4 66666 3333 11 4 0 4 0 777 4 7 22 8 0 0 0 0 00 00 22222 8 0000000 7 9999999999999999999999999999999999999999999999999999999999999999999999999999 7 9 99 7 99 6666666 7 1111 88 888 00000000 7 777 7 7 44 22 3 7 2222 888888888 3 7 88 7 7777 555555 7 7 22 3 7 22 7 7 222 7 000 33333 7 555555555555555 7 7 0 0 8 8 8 8 00000000 00 0 0 00 00 0 0 8 0000 444444444 0000 0 0 8 0 0 0000000 0 88 666 8 8 8 0 00 00 0 0 0000 0000 0 00 0 0 5 0 0 5 55 555 0 55555 000000000 2 2 0 555555 0 2 888888 8888 88 0 0 8888888888888888888 555 2 2 5 5 222222222 2 000000000000 00 0 00000000000000 888888 0 00 4 0 888888888888888888888888888888888888888888888 0 0 00 0 6 0 0 0 0 0 2 8 555 88 0 0 2 22 2222222222222 0000 2 0 2222
consensus : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAAT-A-CATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGGATTTA--TTT-GTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-ATTTC-T--TAT-TTTAGGTC--T-TTG-AC-A-AGC-ATAATT-TA--TACA-CTG-AATGATGATAGATTTTCA-TTTCCAAAA-GAG-CAAAAC-GTGTCCATA-T-AAAC-----ATT-AA---A-AA--CG-TTAGA-TTTTTACA-AAC-T-AATATAATTCATATCCCATTTATATT--------GAATTC--TT-TTTA-CAN-T--GA-TGATCG-AGGAA-T--GAAATG---C--A--TTCG----AGGTAA-TAATC-GTCGATGA-TA-C-------T-AGTTGAC-AATAATCAATATAGTTCAACGTCAATATTT-GGA--CAATGTGCATAAA--TGTA-CAAGCC-CAGTTTATCTGTAATGT----TGT----AAA-TAANCAAAA-TA-AAAGA-TTT-GATACCAAATTAATTTGT---AC-TTTTT--A--TTTTGT----CT-A-AAAATAATATTAAATTCAAT-GCC--GC--AC-AAATTTTGTTGCCCT---ATGG---AC--ACAT-TG-AAAATCAA------------GG-----GG---GGGGGTAATTCAACAAA--CATCC--GTAATTTTGAA------------GATTC--GT-CCGAT-A-----T------ATGT-----AGCCTG--TCTTGGAGGAATT-T-----GT-----------TAATAT---------TT-T-------TCT-ACC-ATTT--CT-GACAAT-AAAAT-CCT-TTG-GCAGNTTAGTAAAGATTGTGAATTTAG---GTT--AATGTACA-AT-TTTTA-CTGGACGTAACAT-TA---G--CCTAG---GTTATT-GA----AGGGGGGGG
Reference ( family-2669 ) : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAAT-A-CATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGGATTTA--TTT-GTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-ATTTC-T--TAT-TTTAGGTC--T-TTG-AC-A-AGC-ATAATT-TA--TACA-CTG-AATGATGATAGATTTTCA-TTTCCAAAA-GAG-CAAAAC-GTGTCCATA-T-AAAC-----ATT-AA---A-AA--TG-TTAGA-TTTTTACA-AAC-T-AATATAATTCATATCCCATTTATATT--------GAATTC--TT-TTTA-CAN-T--GA-TGATCG-AGGAA-T--GAAATG---C--A--TTCG----AGGTAA-TAATC-GTCGATGA-TA-C-------T-AGTTGAC-AATAATCAATATAGTTCAACGTCAATATTT-GGA--CAATGTGCATAAA--TGTA-CAAGCC-CAGTTTATCTGTAATGT----TGT----AAA-TAANNAAAA-TA-AAAGA-TTT-GATACCAAATTAATTTGT---AC-TTTTT--A--TTTTGT----CT-A-AAAATAATATTAAATTCAAT-GCC--GC--AC-AAATTTTGTTGCCCT---ATGG---AC--ACAT-TG-AAAATCAA------------GG-----GG---GGGGGTAATTCAACAAA--CATCC--GTAATTTTGAA------------GATTC--GT-CCGAT--------------ATGT-----AGCCNG--TCTTGGAGGAATT-T-----GT-----------TAATAT---------TT-T-------TCT-ACC-ATTT--CT-GACAAT-AAAAT-CCT-TTG-GCAGNTTAGTAAAGATTGTGAATTTAG---GTT--AATGTACA-AT-TTTTA-CTGGACGTAACAT-TA---G--CCTAG---GTTATT-GA----AGGGGGGGG
gi|1 : A-GA-GCCCACCGGAA-AGGGTCAAAATCGGCC-TGGTA---TTT-CATGAAAA---TAAGCT-GAAGAGTAACT-A---AAC--AAA-TAT-GCAATG--ATTTATTATCAAT-AATACATT-G-T-AG-T-AA--TGT-----ATC--C-AC--AATCAAA-T-GTTA-AAG--TCT--T-GA-G--TCATAACTGAGTTG-TACACGTACA-AACACAATGATCAATTT--GC-GTTTTGGTC-CTTTAAAATAGTCCAAATTGTTGAACTTTGACTCAA----------------------A--------------------T------------------TTTTCAGCTTTGTCCACATCA--AAC--CGAA-------CAAACAC--A-AAA-CTTCTGA--CATTGA-----T--AAAG---AAATGAA-AACTG-CACAAATAA-TGTTGATTTCAATTTT-TTTCGACTAAAT----GTGGCCAC---GAAGGGGAGAATATTTCGTGATATGTTTAGGTCC-T-TTG-A----AGA-ATAATT-TA----CA-CTGGAATGGTGATAGATT--CA-TTTCCAAAAAGAGGCAAAAT-GTGTCCATA-T-AAAC-----ATT-AA---A-AAAATGGTTAGA-TTTTTACA-AAC-T-A-TATAATTGATATCCTATT-ATATTTGTCCCTTGAATTC--TT-TTTA-CAG-TTGGA-TGATCG-AGGAAATCGGAAATGTGAC--A--TTAAGAATAGGTTA-TAATCCGTCGATGA-TAGC-------T-AGTTGACCAATAATTCATA-AGTTCAACGTCA-TATTT-TGAGGCAATGTGCATAAA--TGTAACAAGCCACAGTTTATCTGTAATGTATGTTAT----CAA-TAACCAAAAATA-AAA-A-TTTAGATACCAAATTAATTTGTT--AC-TTGTT--AATTTTTGTTATACA-A-AACATAGTATTAAAT-CAAT-GCCTTGC--AC-AA-TTTTGTTGCCCT---ATGT---AC--ACATGTG-AAATTTAA------------AAAAAAAGGACCGGGACTAATTCAACAAAAACACCG--GAAATTTTGAA------------GATTC--GT-CCGATGATAAGTT------ATATTATTAAGCCTGAGTCTTTGGAGAATTGT-----GT-----------TAATAT---------TT-T--------CT-ACC-ATTTTTCT-GACAAT-AAAATTCCTATTG-GCGCGTTAGTA--GATTGTGTATTTAG---GGTGGAATGCACA-ATATTTTA-CTGGACGTAACAT-TATAGG--CCTA----GTT-TT-GAGGTCAGGGGG
gi|10 : --TTT-GTTCGA-TGCAT----GTGGCCAA---A-----TGGAA-ATGTC-T--TGT-TTTATGTT--T-TCG-GC-A-AAC-GTAATT-TT--TGCT-TCG-AATGATGATAGTTTCCCA-TT---AAAA-AAT-GAACGCTGTCTCCTTA-TAAAAT-----ATT-AA---ACAC--CG-AGAGATTTTTTACA-tattcctatgggcacggaggcaatggcgcctgtccacacttgtttgcggcaaaaaagatagatttgaattgtagagcaaattaaaagggttggctgacaaa
gi|11 : A-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TG-TA---TTTTCATGAAAAA-TTAA-CT-GAT-AGTTAAT-A---AAC--AAA-TATTGCA-TT--AATTACTATCAAT-A-CATATT-G-T-AC-A-AAA-TTC-----ACCCTC-ATTCA-TTAAAAC-GTTt
gi|12 : TTCAA------------GATTC--AT-GCGAT--------------ATG--------CCAG--TTTTGAGAGAATT-T-----GTTAAGGAAGGCATAATAT---------TTATATATTCATCT-ACC-ATTT--CA-TACCAT-AAAAT-CCT-Tggttttatttttcaa
gi|13 : A-GA-ATG-AC--GAA-ACG-TCACAATCGGCC-TG-TA---TTTTCAGGAAAAA-TTAA-CT-GAA-AGTTAAC-A---AACATAAA-TA---CA-TGCCAATT
gi|14 : GCCA-GA-GCC-GC--GAA-AGG-TAAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAT---GA-TAT---G-TA--AATGA-TATCActgttatatcttg
gi|15 : TT-------------A----------------------A--------------------A------------------TTTTCAG-TTTGGTCACAACA--A-C--CGAA-------CAAA-ACA-A-AA--CTTC
gi|16 : tggaactttgacTA-GA-GCC-AC--GAA-AGG-TCAAATTCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-
gi|2 : CTATGA-GCAGAC--GAA-AGG-TCAAAATCGGCCCTGGTAATTTTTCCATGAAAAAATTAA-CT-GAA-AGTTAATTC---AAC--AAAATATTGCA-TG--AATT-TTATCAAT-A-CATATT-G-T-AG-T-AAA-TGT-----ATC--AGAT--A-TCAAAAG-TTTATAA---TCTAGT-GACTACTCATAA-TGAGTTG-TACACGT-CACAACACA-TGG-CG--TTTTGCCTTTTG--ATACTTTAAAA-------AAA-GTC-------------AAATCTTTGGAAACTTGACTTAAA--------------------T------------------TTTTCAG-TTTG-CCAC-TCA--A-C--CGAA-------CAAA-ACCAG-AAGACTTCTGA---ATTGAAGGAAC--AT-G---AAATGAATAACTG-CACAAATAAATGTT----------------CAG-TGAAT----GTGGCCAT---A-----GAGAATATTTC-T--TAT-TTTAGGTC--TATTGTACTATAGC-ATAAT---A--TACAGCTG-AATGATGATAGATTTTCAATTTCCAAAA-GAG-CAACAC-GTGTCCATAGT-AAAAG----ATT-AA---A-----CG---AGA-TTTTTACATAACCT-AATATAATTCATATCCCATTTATGTTCTG-----GAATTTG-TT-TTTA-CAA-T--GACTGATCGGAGGAA-C--GGAATA---T--GACTTCG----AGATAAATAATC-G-CGATGAATA-C-------TTAGTTGAC-AATAAC--ATATAGTTCAA--TCAATATTTTGGA--CAATGAGCATAAGATTGTA-CAAGCC-CAGTTTATCTGTAATGT----TGTAATAAAG-TAAACAAAA-TAGAAAGATTTT-GATACCAAATTAAATTGTGTAAA-TTTTT--A--ATTTGT----CT-AGAAAATAATATTAAATTAAATAGCC--GTCAAC-AAATTTTGTTGTCCTGCAATGATACAC--ACAT-TGAAAAATCAAGAAAAAGGGAAGGG-----GG---GGGGGTAATT------A--CATCC--GTAA-TTTGAAAACCGGAAATTGAATTCCAGTCCCGACTAATGTATATATAAATGT-----ACCCTG--TATTGGAGAAATT-T-----GT-----------AAAT-T---------CT-T-------TCTAACCAATTTG-CTAGACAAA-TAAAT-C---TTGTGCAGTTTTGTAAAGATTGTGAATTTAGTTAATT--AATGTACATAT-TTTTACCTGGACGTAG-ATATA---GGTCCTAAGTCGTTATTGGA----AGGGGGGGG
gi|3 : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-C--GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAATAA-CATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCAT-ACTGAGTTGATACACGT-CACAACACG-TGA-CG--TT--GCCGTTTT--CT-CTTTAAAA-------AAT-GTC-------------A----------------------A--------------------T------------------TTTTCAG-TTTGGCCACAT-A--A-C--CGAA-------C-AA-AC--G-AA--CTTCTGA--TATTGA-----T--AA-G---AAATGAA-AACTG-CACAAATAAATGTTGAATTTA--TTT-GTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-A-TTC-T--TAT-TTTAGGTC----TTG-AC---AGC-ATAATT-TA--TACATCTG-AATGATGATAGATTTTCA-TTTCCAAAA-GAG-C-AAAC-GTGTCCAT-----AAC-----TTT-AA---A-AA--TG-TT-GA-TTTTTGCA-AAC-TAAATATAATTCATATCCCATTTATA-T--------GAATTC--CT-TTTA-CAT-T--GA-TGATCG-AGG-A-T--GAAATG---C--A--TTCG----A-GTAA-TAATC-GTTGATGA-TA-CATGTACTT-AGTTGAC--ATAATCAATATAGTTCAACGTCAATA-TT-GGA--CAATGTGCATAAA--TGTA-CAAGCC-CAGTTTATCTGTAATGT----TGT----GAA-TAACAAAAA-TA-AAAGA-TTT-GATACC-AATTAATT--T---AC-TTTTTAAA--TATTGT----AT-A-AAAAT-ATATCAAATTCAAT-GCT--AC--ACAAAATTTTATTGC------ATGG---ACCAACAT-TG-AAAATCAA------------GG-----GG---GGGGGTAATTCAACAAA--CATCCCGGTTATTTTGAA------------GATTC--GT-CCAAT--------------ATGT-----AGCCTG--TCTTAGA-AAATT-T-----G------------TAATAT---------TT-T-------TTT-ACC-ATTT--CT-GACAATAAAAAT-CCT-TTG-GCAGATTAGTAAAGATTGTG-ATTTAG---GTT--GATCTACA-AT-TTTT--CTGGACGTAACAT-T----G--CCTAG---TGTATT-GA----AGGGGGGGGggggtattcctatcaagagcacagaggcaatgcatttccaccattgtttggcgtcgaaaaaattaaattttaatttagagtgagagttgaaaatact
gi|4 : -G---AAATGAA-AATTG-CACAAATAAATGTTGGATTTA--TTTTGTTCGA-TAAAT----GTGGCCAT---A-----GAGAA-ATTTC-T--TAT-TTTAGGTC--T-TTG-GC-A-AGC-ATAATT-TA--TACA-CTA-AATGATGATAGATCTTCA-TTTCCAAGA-GAG-C-AAAC-GTGTCCATA-T-AAAC-----ATTCAA---A-AA--TG-GTAGA-TTTTTACA-AAC-T-AATATGATTCATATCCCATTTATTTT--------GAGTTTTATT-TTTA-CAA-T--GA-TGATCG-GGGAA-T--GGAATG---TGAA--TTCG----AGGTAA-TAATC-GTCGATGA-TA-C-------T-AGTTGAC-AATAATCA--ATAGTTCAACATCAATATTT-GGA--CAGTGTGCTTAAA--TATA-CACACC-CAGTTTATATGTAATGT----TGT----AAAGTAAATAAAA-TA-AAAGA-AAT-GATACC-AATTAATATAT---ACTTTTTT--A--TTTTGT----CTAA-AAAATAATATTTAATTCAAT-GCC--GC--AC-AACTTTTGTTGCC-----ATGG---AC--ACAA-TG-AAAATCAA-------------A-----GG---GGGGAT-ATTCAAAAAA------C--GTAATTTTGAA------------GATTC--AT-CCGAT--------------ATGT-----AGCCAG--TCTTGGAGGAATT-TGAAAAGT-----------AAACATATACATGTATT-T-------TCT-ACC-AGTT--CT-GACCAT-AAAAT-CCT-TTG-GCAGTTTAGTTAAGATTGTGAATTTAG---GTT--AATGTACA-AT-T---------ACATA-----TAG--G--CCTAGT--GTTATT-AA----AGGAGGGAG
gi|5 : GCTA-GA-GCC-AC--GAA-AGG-TCAAAATCGACC-TAGTA---TTTTCATGAAAAA-TTAA-CT-GAA-TGTTAAT-ATTAAAC--AA----TTGCC-TG--A-TTAGTATCA-T-A-CATATTTG-TTAG-T-AAAATGA-----ATC----AT--A-TCACAATTGTTA-AA---TCTCGTTGACG--TCATAACTGAGTTG-TA-ACGT-CACAACACG-TGA-CG--TT--TGCGTTTTT-CT-CTTTAAAA-------ATT-GTA-------------A----------------------AATTTTGGAACTACTTGGACTTACA---------------TTTTCAG-TTTG-CCACATCACCA-CAACGAAATAAAAATAAA-AT--A-AA--CTTCTGAGTTTTTGA-----T--AA-GTAGAAATGAA-AACTGTCACAAATAAATGT-GGATTTA--TTTTGTTTCA-TATATCTCTGTGGCCATTAGA-----GAAAA-ATTTC-TA-TAT-TT-AGGTTCTT-TTG-AC-A-AGCCATAATTATAATTACA-CTG-AATGATGATAGATTTGCA-TTTCAAAAA-GAG-CAAAAC-GTGTCCATAGT-AAACCTACGATT-AATAAA-AA--TG-TTGGA-TTTTTA-A-AAC-T-AATATAAT-CATATCCCATTTATATT--------GAATTC--CTATTTAACATGT--GA-TTATCG-AGGAA-T--GAAACG---C--A--TTCG----AGGTAA-TAATC-GTCGATGA-TA-C-------T-AGTTGAC-AATAATCAATATAGTTCAACGTCAATATTT-GGA--CATTGTGCATAAA--TGTA-TAAGCC-CAGTTTATCTGTAATGT----TGT----AAggggtattcagtggcttaaaaattagcttcgtatgaggcatggaggcatgtgctttcacattgttgcggcaaagcatgaaatctaatttagagtcaagttaaaagaatattaggtttacaaaaaaatatgcagtgcctagatattgaaaat
gi|6 : A-GA-GCC-AC--GAA-AGG-TCAAAATCGGCC-TGGTA---TTTTCATGAAAAA-TTAA-CT-GAA-AGTTAAT-A---AAC--AAA-TATTGCA-TG--AATTATTATCAAT-A-CATATT-G-T-AG-T-AAA-TGT-----ATC--C-AT--A-TCAAAAT-GTTA-AA---TCT-GT-GACG--TCATAACTGAGTTG-TACACGT-CACAACACG-TGA-CGT-TT--GCCGTTTT--CT-CTTT-AAA-------AAT-GTCA------------A----------------------A--------------------TTTGGAACTTTGACTTAAATTTTAAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AC--G-A
gi|7 : GCTA-GA-GCC-AC--GAA-AGG-CGCATTTTGGCC-TA-TA---TTTACCCGAAAAA-TTAA-AT-GAA-ACTTAAC-A---AAC--AAT-GATTGCA-CT--AAATATCGTCTTT-A-CAAATT-G-T-AG-T-AAA-TGT-----TTT--C-AT--A-TGAAACT-TTTA-A
gi|7 : T-ATC-------------A----------------------A--------------------A------------------ATTTCAG-TTTGGCCACATCA--A-C--CGAA-------CAAA-AT--GAAA--ATCCTAG--TATT-A-----TTAAA-G---GGATGAA-AAAGG-CACAGAAATATGATGttttatcaaaatttcagtttggccacatcaaccgaacaaaatgaaaatcctagtattattaaagggatgaaaaaggcacagaaatatgatg
gi|8 : gctagagccacgaaaggcgcattttggcctatatttacccgaaaaattaaatgaaacttaacaaacaatgattgcactaaatatcgtctttacaaattgtagtaaatgttttcatatgaaacttttaattt--GGA-ATG-TCGAAATCGGCA-TG-TA---TTTTCATGAAACA-TTAA-CTGGAA-ACTTCGC-A---AAC----A-TAGTGCA-CT--AA----TATAACT-T-TACACT-GCT-AGTT-AAA-TTTATGCCATT--C-AT--A-TCAAATT-GTCA-A-----CT-AC-GAC
gi|9 : TA-GAAGCC-AC--GAATAGG-T-AAAATCGGCC-TGGTAT--TTTTCATG-AAAA-TTAA-CT-GAA-AGTTAAT-A---AAC---AA-TATTGCA-TG--AATTATTATCAAT-A-CATATT-G-T-AG-TCAAA-TGTC----ATCA-C-AT--A--CAAAAT-GTTA-AACATTCT-GT-GACG--TCATaaatgtgttctaaatggccatagcattgtaaagttt