lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 11 11111 1111 2222222222 1 111 111111 11 11111 1 2222 111 2222 222 6666666 222 11 44444444444 11 1 1 1111 11 1111111 111111 2222222222222222222222222222222222222 11 11111 22222222 111111 11 111 22222222222222222222 111 3333333 1 1111 333333333333 1 1 1 111 1 111 11 1111111111 1 2222222 1 1 1
lowQualScore : 33 55555 888 0000 1111111111 1 777 5 5 5 2 333 22 999999 55 5 66 8 5 44 2 3 5 7 55555 6 99 99 333 6 1 2 3 5 2 4444 0 3 777 3 1 5555 7 7 7 1 333 7 7 4 0 8888888 8 999 33 00000000000 55 33 2 99 9 6 55 0000 5 5 0 00 1 2 888 4444444 444444 0 7777777777777777777777777777777777777 00 44444 8 3 3 55 2 666 66666666 6 333333 55 4 222 5 99999999999999999999 555 3333333 5 5 5 77 3 6 3 0 7 4444 6 555555555555 6 3 4 6 2 2 1 6 4 0 6 2 3 6 6 111 3 3 111 1 6 1 44 0 6666666666 1 3 1 3 3 4444444 9 5 0 0 6 2
lowQualScore : .. ..... ... .... .......... . ... . . . . ... .. ...... .. . .. . . .. . . . . ..... . .. .. ... . . . . . . .... . . ... . . .... . . . . ... . . . . ....... . ... .. ........... .. .. . .. . . .. .... . . . .. . . ... ....... ...... . ..................................... .. ..... . . . .. . ... ........ . ...... .. . ... . .................... ... ....... . . . .. . . . . . .... . ............ . . . . . . . . . . . . . . . ... . . ... . . . .. . .......... . . . . . ....... . . . . . .
lowQualScore : 66 66666 888 6666 9999999999 9 888 0 0 0 1 888 11 444444 22 1 77 1 7 00 5 5 2 3 88888 7 88 22 888 7 0 2 2 0 5 0000 2 2 555 2 0 3333 3 3 3 0 333 3 3 7 7 3333333 8 222 88 55555555555 88 00 0 22 2 8 99 6666 0 0 2 55 1 0 888 6666666 444444 9 2222222222222222222222222222222222222 66 99999 9 6 3 00 0 444 00000000 7 444444 00 0 777 0 66666666666666666666 666 7777777 7 7 7 99 3 7 7 7 8 2222 7 222222222222 7 3 2 7 7 5 0 7 2 7 7 2 3 7 7 777 3 7 777 0 7 0 00 8 4444444444 0 2 0 8 6 4444444 6 6 8 0 0 3
consensus : ATGTAACCG--AG----NAG---A----AAG----------GCAGATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAAT-ATAAA-GAAACATATAGAAATGATATTACAA---ANATGA-AAAT-ACAAT--TTNAGTA-AGTTACCCACAGTAAACGTTTCAGAAGAATCTTATACTTT---ATGAAAACGATGTACGT-TGTTCTGTAAATAATTAAAATTTAGATCTTACGGAC---TCATATAATAGNTTAAAC----T--TCAAACTTTGAANN-CA--AAAAT---ANAAT-A-AGTANAAA-NCTTGCAATC--AAAATAATAA-CGTA----A-ATGA-AGAC-TTTCACTGGTAATAAA---A------CACA------TAATTAAAT-------AT----AT-----T---CAT----------TA--CCN--TAAGA-TGCAGATGAT-ATA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTAAN-----TTTA-TAT-TAA-AAG--TG-AAA-CTCTATTATTGGATA----AA-GAAA-T-ACGA----A-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATAAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTG---CGCAT-TAGAACTNNCGGTT--ANTTAAATTTTAAGATTATATTTAGCGAAATGATGAAAGAAAAATAATAAAACGAATATT-GGGTTCTCATAATATCACATA
Reference ( gi|3 ) : ATGTAACCG--AG----AAG---A----AAG----------GCAGATGTTAAGTT---T-CTC-A-GTTTATTA--TCATATACAA------GAAG-CATTGATCTACAATAACAGAAAAAAT-ATAAATGAAACATATAGAAATGATATTACAA---AGATGA-AAATGACAAT--TTAAGTA-AGTTACCTACAGGAAACGTTTCAGAAGAATCTTATACTTT---ATGAAAACAATGTACATGTATTCTGTAAATAATTAAAATTTAGATTTTACAGAC---TCATATAATAGTTCAAACT---TTATCAAACTTTGAACC-CA--AAAAT---AGAA--A-AGTAGAAA-ACCTGCAATC--AAACTAATGA-TGTA----A-ATGA-AGAC-TTTCACTGGCAATAAA---A------CACA------TAATTAAAT-------A-----AT-----T---CAT----------TA--CCT--TGAGA-TGCAGATGAT-ACA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTAGA-----TTTA-TAT-TAA-AAG--TG-AAA-CTCTATTACTGGATA----AA-GAA--T-ACAA----A-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-AGGTG---CACAT-TAGAACTGACGGTT--ATTTAAATTTTAAGATTATATTTAGCAAAATGATGAAAGAAAAATGATAAAACGAATATT-AGGTTCTCATAACATCATATAT
gi|4 : ATGTAACCG--AG----AAG---A----AAG----------GCAGATGT-AAGTT---TTCTC-A-GTTTATTA--TC-TATACAA------GAAG-CATTGATCTACAATAACAGAAAAATA-ATAAA-GAAACATA--GAAATGATAT---AA---AGATGA-AAATGACAAT--TTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTT---ATGAAAACGATGTAAA--TATTCTGT-AATAATTAAAATTTAGATTTTACAGAC---TCATATAA-AGTTCAAAC----TTATCAAACTTTGAA-C-CA--AAAAT---AG-A--A-AGTAG-AA-ACCTGCAATC--AAACTAATGA-TGTA----A-ATGA-AGAC-TTTCACTGGCAATAAA---A------CACA------TAATTAAATATAGA--A-----GT-----A---CA-----------TA--CCT--TGAGA-TGCAGATGATAACA--GACCAGAT---TCAAT--TAACTC-ATC---GCAAAC--GT-ATT--ACTGCTCTGAT-TT--A-----ACTAT----A--AAA---CGCGGTAGA-----TTTA-TAT-TAA-AAG--TG-AAA-CTCTA-TACTGGATA----AA-GAA--T-AC-A----A-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-A-GTG---CACAT-TAGAACTGACGGTT--ATTTAAATTTTAAGATTATATTTAGC-AAATGATGAAAGAAAAATAATGAAACG-ATATT-GGGTTCTCATAATATCATATA
gi|5 : TGTAACCG--AG----CAG---A----AAG----------GCAGATGTTGAGTT---T-CTC-A-GTTTATTA--T---ATACAA------GAAG-CATTGACCTACAATAACAGACAAAAT-ATAAATGAAACATGTATAAATGATATTACAA---ATATGA-AAATTACAAT--TTAAGTA-AGTTACGTACAGCAAACGTTTCAGAAGAATCTTATATTTT---ATGAAAACGATGTACATGTGTTCTGTAAATAATTTAAATTTAGATCTTACAGAC---TCATATAATAGACTAAGCTAAGT--TCAAACTTTGACTG-CA--AAAAT---ACAAT-ACAGTAGAAACACTTGC-ATC--AAA-TAAT-A-TGTA----A-ATGA-AGACTTTTCACTGGT-ATTAA---A------CACA------TAGTTA---------------------------CA-----------TA--CC---TAAGA-TGCAGATGAT-ATA--GACCAGAT---TCAATAGTAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TTA-A-----AC--TATAAA--AAA---CGCGGTAAC-----ATTA-TAT-TAA-AAG--TT-AAA-CT---TTACTGGATA----AAGGAA--TCACAA----A-ATGGACCAAT-GAAATCGAA-AACCAATGAAAATAACAGAATGAAAC-TTAACTCC-A-GCAAACTC---AATCCAAGGTG---CGCATGTA-ATCTGACGG-------------------TTATATTTAGC-------------AAAAATAATAAAACGAACACT-GGGTTCTCATAATATCACAT
gi|2 : TGTAACCG--AGCAGCAAGGAAA----AAGAATGAAATCAGCTGATGTT--GTTCTAT-TTC-ATATTTAATAATTCA-----AA------GAAGGCATTGGCCTAAAAGAA---AACAAATTACAAATTAGAGAAAAAGACAT--T-TTACACTTCGGATTACAAA----AATCGTTGA-CA-AGTTACCAA----AAA---TACAG--------CACACTTTGTAATGGAAAAAGAATACGT----TCGATAAA--ATTAACCTTT-GAACTCACGAACAATTC-TAAAATTACTTAAAC----------AACTTT-AACTGCA--AAAAT---ACAATAA-AGTATAAA-CTTTGCAATT--AAA--AATAA--GTATCACATACAA-AAGC----CATTG-TAGTAAAGTAA------GACC------TAAGTAAAT-------ATA---AT-----T---CTTACA-------TA--CCA--CAAGA-TGTAGCTGAC-ATA--AGTTGGAT---CT-AT-----CT---TCCGAG-AAAT--GT-AT---ACTGCTCTGAT-TT--A-----AC--A----A--AGAAATCGCGGTAAC-----TTTA-AAC-TAA-ATG--TGTAAA-CTTTATTATTGGTGA----AA-GAAAAT-AGGA----ATAT-G-CCAAT-GAAATGAAAGAACCAATG-AAATGACAGAATAAGACTTTTACT-C-AGGAAAACTC---AATCC-GAATG---CGCAA-TAGAATTTTTTGTTCAATTCAAA-TATAAAATTTTA-TTAATGAAACGATATGAGAAAACAAATAAAACGAAT
gi|21 : tcgcacacgtcaccgtgtatgTGTAACCGTAAG----GAG---ATCGAAAG----------GCAGAGGTTGAGTT---T-CTC-A-GTTTATTT--TCATATACAA------GAGG-TATTGACCTACAATAATAGACAAAAT-ATAtaaaatacatatagaaaattgacattcatactatcacata
gi|24 : TGTAACTG--AG----CAG---A----AAG----------GCAGATGTTGAGTT---g
gi|11 : gtaacGCAACTG--AG----AAG---A----AAG----------GTGGGTGTT-GGTT---T-TTC-A-GCTTATT---TAATATACAAT-----GAAG-------------------GACAAAAT-ACAAAGTAAAAACATAG-AATAATAT-------------A-AAATTACAAG--TTA---------ACCCATACTAAACGTTTCAT----ATTTT-TATTTT---A--AAAA
gi|23 : AACCGG-AG----CAG---A----AAG----------GCAGATGTTGAGTT---T-CTC-A-GTgatata
gi|12 : ga---A----AAG----------CCAGATGCTGAGTT---T-TTCCA-GTTTAATT--TCATATATAA------GAAG-TATTTACCGACAATAGCTGACAAAAT-ATAAAAGAAACATATTGAAATTTTATTACAA---ACATGA------ACAGT--TTTAGTA-AATAACCCACAGTAAA
gi|19 : TGAATT---T-CTC-G-GTTTAATT--TCATGTACAATTTAAGAAAA-CATTGACCTACAATAACGGACAA---------------ATATAGAAATGATATTACAA---ACATGA-AAATGACAAT--TTTAGTACAGT
gi|1 : tgTA--TCACATACAA------AAAG-CATTGgt
gi|6 : cagcggccatgatgttaaccgagcagcaaggaaaatgaatgaagatagctgatgatttctatttcagttttaatgatgtcaaagaattaaggcattgacctaaggaaaaacaaattacaaattaagagaaaaaagttacaaatttaccaaatcgttgaaaaagttaccaataatacagcaacaacattgtaatggaaaaagaataacgttagataagaaattaacctttgaaactcaacgaacaattctaataattactcaacaactttaactgcaatatacaataaagttaataaacttttgcaataaaaaataagCAAATTTTCAAAA-CAGCAAAATTGCAATA--A-AGTACAAA-CTTTGCAATTTAAAAAAAATAAGTGTC----A-ATCACAAAC-ATTAAGCAGCAAAATA---A------GACA------TAAATAAAC-------ATGACTAT-----T----AT----------CAT-CCA--TTAGA-TGCAATCGAT-ACA--AGCTGTATAAATC-TT--TACCAC-A-----A-AAAT--GT-GC---ACTGCTCTGAC-TTGCA-----AT--T----T--AAA-----CGGTA-A-----CTTG-CATCTAA-AAG--Ttaagtaagaagtaagacctaagtatatatgattcttacatccacaagatgttggactgatcttcccacgaaaatgtattgctcttggctactcccgtcatttaactacagcaaatcgagagtgaacttcggttaaagctaaatgtgtaaacttttattctttatattatctggtgagatcagaaaaatagggcgatatacggcctaatgagagagttgaaaagaatgcaatgaatggacacgaataaaacgctctttacatcctctaggaaaacctcacaaatccgataatgagcgccacaagtaagaatgggtttggtccaatacaaataatcttatttgaatgaacgaaattatgatgaaacagatagagagacgaataaagaatacatataagaaaatatgacattcatttgatctttactattttcacata
gi|14 : tgtaacaagcagcaagaatagaaaatttcgtcttgatgttgtttgtttcgatgcaaatggatatgttggtaagatattaaggtatcaacctataagcaaaagagatatgattaaattagacaaagtgcaaatttgcattttcctttccttgggcaatatgttaccaattatacatttgtaaccaaagaaaatatgtctcatcaaatatcgacttacaaaaTGCAATC--AAAATAAT-A-TGTA----A-ATGA-AGAC-CTCTACTGGTAATAAA---A------TACATGTACGTAATTAAAT-------AC----AT-----TTTGTATATAAGTTACATA--CCT--TAAGG-TGTAGATGAT-ATA--GACCAGAT---TCAAT--TACCTC-AT
gi|13 : tTGCAATC--AAAATAAT-A-TGTA----A-ATGA-AGAC-ATCTACTGGTAATAAA---ATGCATGTACA------TAATTAAAT-------AC----AT-----TTTGTATATAAGTTACCTA--CCT--TAAGG-TGTAGATTAT-ATA--GACCAGAT---TCAAT--TACTTC-ATC---C-AAA
gi|17 : tAATAA-CGTA----A-ATGA-ACAC-TTTTACTGGTAATAAA---A------CGCA------TAATTTGATATATAGAA-----AT-----TA--CA-----------TA--CCG--CAATACCGCATATGAA-ATA--GA-CAG-T---TC-TT--T--CTCGAT------AAGCCGGT-ATT--A
gi|18 : ATAA-CGTA----A-ATGA-ACAC-TTTTACTGGTAATAAA---A------CGCA------TAATTTGAT-------AT----ATAGAAAT---TAC----------TA--CCG--CAATACCGCATATGAA-ATA--GA-CAG-T---TC-TT--T--CTCGAT------AAGCCGGT-ATT--AC
gi|8 : ---CAT----------TAACCCTATTAAGA-TGCAGATGAT-AAA--AACCAGAT---TC-A-----ACTC-ATC---A-AAAC--GT-AT---ACTGCTCTGAT-TT--C-----AC--T----ATAAGA---CGTGGTAAC-----TTTA-TAT-TTA-AAG--TG-AAA-CTCTATTATTGGATATTAAAG-GAA--A-ATGA----A-AT-GGCTAAT-GAAATCAAAGAACCGATG-AAATAACAGAATAAAAC-TTAACT-CGA-CCAAACTC---AATCC-AGATG---CGCAT-TAAAACTTCCGGTT--AATTGAACTTTAAGATTATACTTAACAAAATAAT-------AAAT-------TGAATATC-AGTTTCTCATAATATCA
gi|9 : agGATGAG-AAA--GAC-AGAT---TC-AA--TTACTC-ATC---G-AAACA-GT-ATT--A-TGCACTGAC-TT--A-----ATA-T----A--AAA---TGCG-TA-------TTTA-TAT-TAAGAAG--CG-AAA-CTCTATTATTGG-TA----AG-GAAA-T-TCAATGGAA-AT-GAACAAT-GAAATCGAAAAACCAATG-AA-T--CAGACTAAA----TG-CT-C-A-GCAAACTCGAAAATC--AGGTG---CG-AT-TAGAACTA--GGTT--AATTAA-TTTCAATATTCTATTTAGCAAAATGATGAAAG-CAAAT-ATAAA---AGTATTCAGGTTTCAATAATATCA-ATA
gi|7 : gcGAT-ACAAGGATCTGAT---C---T--TAACCC-GAA---G-AAAT--GTTATCTGACTTCTGAGATGTT--AGAGTCAC--A----G--AAATT-CGCGGTATAACTTTTTTAACAC-TAA-ATGCCTGTAAATCTTTAT-ATTGGTGA----AA-GAAAGT-AGGA----A-ATAGGCCAATTGAAAT--GAGAACCAATG-AAATGACAGAATAAAAC-TTTACTCC-A-GGAAACTC----ATCCGAAATGCGCCACAC-TAGAaa
gi|25 : agacctaagttaaaatatgatcttacataccacaaaagaatatctagC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----T--AAA---tgttttggtcaattccaataacataacacatgtttgatttttaatgaataagcgaactaatgtagaaaacagatcacataaacgaatagagatacgaatatacgaaaatagacattcatactacacata
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): ACGCCATGTTTGTAATCGAACAGCAAGGAATAAGAATTCGGCTTTGATGAAAATGGATAAGTCGGAATTTACCTATAAGCAAAACAAATTACGAATGAATCAAACAAAAATTACAATCTTACATTTCATAAACTGTTGACAATAAGTTACTAATGATAGAGTATACATTTGTAAGGAAAAGAAATTGACCTTTGAACTTGCAAATTCAGACAATATACTCTAACAATTTAACTGGAAAAATATAATAAAGTAAAAACGTTGCAATTAAAAGGAAT
Unaligned ( gi|15 ): CGCACACGTCACCGTGTATGTGTAACCGAGCAGCAAGGAAAAAGAATGAAATCAGCTGATGTTGTTCTATTTCATATTTAATAATTCAAAGAAGGCATTGACCTAAAAAGAAACAAATTACAAATT
Unaligned ( gi|16 ): AAGCAACCAAGCAGCAAGGAATAAGAAGAATTTCAGCTTTATGTTGTTTATTTCGAGGAAAATGGATATGTTGATAACTGGCATTAAATTTACTTATATTAGGAAAACAAATCAG
Unaligned ( gi|20 ): AACTGCAAAGTACAATATAAAATGTAATTTTGTTTTATGAGCAAGTGTCACATACAAATATGTACTGTAGTAAAGACATGAATAAATATGATCCATACCTCAAGATGCA
Unaligned ( gi|22 ): TAAAAATAATAAATACATATAGAAAATTGAGATTCATACTATCACATA
Alignments
lowQualScore : 11 44444444444444 111 111 111 111111 1111 111111111111 2 1111 11111 333 111 444444444 111 11 22222 1111111 111111 888888888888888888888888888888888888 222222222 111111 11 11111111 222222222 111 1111 1111 1 111 22222222222 1 1 111 1 111 111 222222222222222222 1111 11111111111 111 1
lowQualScore : 00 1 8888 77777777777777 444 4 222 4 4 8 5 777 1 777777 8 1 1 33 777 4444 0 1 5 888888888888 1 1 2 0 1 0 5 2 1111 0 77777 5 0 2 333 66 3 2 777 3 3 1 666666666 000 11 8 1 11111 1 99 77 5 4 999 4 88 777 3333333 000000 3 222222222222222222222222222222222222 555 6 7777 33 44 1 555 000000000 6 000000 33 3 777 4 55555555 111111111 333 0000 5 0000 5 66 1 5 1 5 5 000 44444444444 5 1 2 5 0 5 2 5 1 1 5 5 000 1 1 000 333 55 3 666666666666666666 2222 5 3 99999999999 1 000 3 5 1 8 0
lowQualScore : .. . .... .............. ... . ... . . . . ... . ...... . . . .. ... .... . . . ............ . . . . . . . . .... . ..... . . . ... .. . . ... . . . ......... ... .. . . ..... . .. .. . . ... . .. ... ....... ...... . .................................... ... . .... .. .. . ... ......... . ...... .. . ... . ........ ......... ... .... . .... . .. . . . . . ... ........... . . . . . . . . . . . . ... . . ... ... .. . .................. .... . . ........... . ... . . . . .
lowQualScore : 66 0 5555 00000000000000 000 4 777 0 0 0 3 666 9 222222 9 1 8 88 666 3333 7 4 7 777777777777 0 4 9 1 0 7 7 2 8888 8 88888 0 8 0 888 55 2 0 555 2 2 0 555555555 444 00 0 0 44444 0 00 99 7 4 999 4 33 000 7777777 555555 6 444444444444444444444444444444444444 666 7 1111 77 66 0 888 111111111 2 666666 66 6 666 4 33333333 333333333 999 5555 0 6666 0 99 4 7 7 0 4 000 99999999999 7 4 3 7 7 7 3 7 0 4 7 7 000 4 7 000 333 99 0 666666666666666666 1111 7 9 99999999999 4 000 6 7 7 0 5
consensus : ATGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATT--ACA------AANATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACATGTATTCTGTAAATAATTAAAATTTAGATCTTACAGAC---TCATATAATAGTTCAAAC----TT---CAAACTTTGAACGCA--AAAAT-ACAATA-AAGTAGAAA-CCTTGCAATC--AAAA-TAA-TAA-CGTAAATGA-AGAC-TTTCACTGGTAATAAA---AC------ACAT------AA-TTAAATAT-A----T-----TC-----ATA-------TA----CCN--TAAGA-TGCAGAT----GATA-TA--GACCAGAT---TC-A-T--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC-T----A--AAA---CGCGGTA--ACTT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAGAAA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATGAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-AATT--AA----AT--------TTTAAGATT----AT-ATTTAGCGAAATGATGAAAGAAAA---ATAATA-AAACGAATATT-AGGTTCTCATAATATCATATA
Reference ( family-2613 ) : ATGTAACCG--AGNAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATT--ACA------AANATGAAAAT-ACAATTTNAGTA-AGTTACCCACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACGT-TGTTCTGTAAATAATTAAAATTTAGATCTTACGGAC---TCATATAATAGNTTAAAC----TT---CAAACTTTGAANNCA--AAAAT-ANAATA-A-GTANAAA-NCTTGCAATC--AAAA-TAA-TAA-CGTAAATGA-AGAC-TTTCACTGGTAATAAA---AC------ACAT------AA-TTAAATAT-A----T-----TC-----AT--------TA----CCN--TAAGA-TGCAGAT----GATA-TA--GACCAGAT---TC-A-T--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC-T----A--AAA---CGCGGTA--ANTT-T----ATATTAA-AAG--TG-AAA-CTCTATTATTGGATA---AAGAAA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATAAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-ANTT--AA----AT--------TTTAAGATT----AT-ATTTAGCGAAATGATGAAAGAAAA---ATAATA-AAACGAATATT-GGGTTCTCATAATATCACATA
gi|11 : GCAACTG--AGAAGA----AAGG--------------TGG---GTGTTG-GTT---T-TTC-A-GCTTA-TT--TAATATACAAT-----GAAG-------------------GACAAAATA-C-AAA-GTAAAAACATAG-AAT-AATAT------------AAAAT-----T-ACAAGTTA---------ACCCATACTAAACGTTTCAT----ATTTT-TATTTTA------AAAA-GATATA
gi|12 : A----AAGC--------------CAG---ATGCTGAGTT---T-TTCCA-GTTTAATT--TCATATATAA------GAAG-TATTTACCGACAATAGCTGACAAAATA-TAAAA-G-AAACATATTGAAAT-TTTATT--ACA------AACATGA-----ACAGTTTTAGTA-AATAACCCACAGTAAA
gi|13 : TTGCAATC--AAAA-TAA-TA--TGTAAATGA-AGAC-ATCTACTGGTAATAAA---ATGCATGTACAT------AA-TTAAATAC-A----T-----TTTGTATATAAGTTACCTA----CCT--TAAGG-TGTAGAT----TATA-TA--GACCAGAT---TCAA-T--TACTTC-ATC---C-AAA
gi|14 : TTGCAATC--AAAA-TAA-TA--TGTAAATGA-AGAC-CTCTACTGGTAATAAA---AT------ACATGTACGTAA-TTAAATAC-A----T-----TTTGTATATAAGTTACATA----CCT--TAAGG-TGTAGAT----GATA-TA--GACCAGAT---TCAA-T--TACCTC-AT
gi|15 : TGTAACCG--AGCAGC----AAGGAAAAAGAATGAAATCAGCTGATGTTG--TTCTAT-TTC-ATATTTAATAATTCA-----AA------GAAGGCATTGACCTA-AA-AAGAAACAAATTA-C-AAA-
gi|17 : cgcacacgtcaccgtgtatgAA-TAA-CGTAAATGA-ACAC-TTTTACTGGTAATAAA---AC------GCAT------AA-TTTGATAT-A----TAGAAATT-----ACA-------TA----CCG--CAATACCGCATAT----GAAA-TA--GA-CAG-T---TC-T-T--T--CTCGAT------AAGCCGGT-ATT--Att
gi|18 : A-TAA-CGTAAATGA-ACAC-TTTTACTGGTAATAAA---AC------GCAT------AA-TTTGATAT-A----TAGAAATT-----AC--------TA----CCG--CAATACCGCATAT----GAAA-TA--GA-CAG-T---TC-T-T--T--CTCGAT------AAGCCGGT-ATT--AC
gi|19 : TGAATT---T-CTC-G-GTTTAATT--TCATGTACAATTTAAGAAAA-CATTGACCTACAATAACGGACAA-----------------ATATAGAAAT-GATATT--ACA------AACATGAAAATGACAATTTTAGTACAGT
gi|2 : tgTGTAACCG--AGCAGC----AAGGAAAAAGAATGAAATCAGCTGATGTTG--TTCTAT-TTC-ATATTTAATAATTCA-----AA------GAAGGCATTGGCCTAAAAGAA--AACAAATTA-C-AAA-T------TAGAGAAAAAGACATTTTACACTTCGGATTACAAAAAT--CG--TTGA-CA-AGTTACCAAAAATA-------CAG--------CACACTTTGTAATGGAAAAAGA-ATACGT-T---CGATAAA--ATTAACCTTT-GAACTCACGAACAATTC-TAAAATTACTTAAAC-----------AACTTTAACTGCA--AAAAT-ACAATA-AAGTATAAA-CTTTGCAATT--AAAAATAAGTAT-CACATACAA-AAGC----CATTG-TAGTAAAGTAAG------ACCT------AA-GTAAATAT-AA---T-----TC-----TTACA-----TA----CCA--CAAGA-TGTAGCT----GACA-TA--AGTTGGAT---CT-A-T-----CT---TCCGAG-AAAT--GT-AT---ACTGCTCTGAT-TT--A-----AC-A----A--AGAAATCGCGGTA--ACTT-T----AAACTAA-ATG--TGTAAA-CTTTATTATTGGTGA---AAGAAAAT-AG----GAATAT-G-CCAAT-GAAATGAAAGAACCAATG-AAATGACAGAATAAGACTTTTACT-C-AGGAAAACTC---AATCC-GAATGCG---CAATAGAATTTTTTGTTCAATT--CA----AA--------TATAAAATT----TT-A-TTAATGAAACGATATGAGAAAA---CAAATA-AAACGAATgt
gi|20 : tcgcacacgtcaccgtgtatgACTG-TAGTAAA---G-------ACAT------GA-ATAAATATGA----T-----CC-----AT---------A----CCT--CAAGA-TGCAtaaaatacatatagaaaattgacattcatactatcacata
gi|21 : aactgcaaagtacaatataaaatgtaattttgttttatgagcaagtgtcacatacaaatatgtTGTAACCGTAAGGAGATCGAAAGG--------------CAG---AGGTTGAGTT---T-CTC-A-GTTTATTT--TCATATACAA------GAGG-TATTGACCTACAATAATAGACAAAATA-T-A
gi|23 : AACCGG-AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTg
gi|24 : gaTGTAACTG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---
gi|25 : gtaacC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC-T----T--AAA---
gi|3 : ATGTAACCG--AGAAGA----AAGG--------------CAG---ATGTTAAGTT---T-CTC-A-GTTTATTA--TCATATACAA------GAAG-CATTGATCTACAATAACAGAAAAAATA-T-AAATG-AAACATATAGAAAT-GATATT--ACA------AAGATGAAAATGACAATTTAAGTA-AGTTACCTACAGGAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACAATGTACATGTATTCTGTAAATAATTAAAATTTAGATTTTACAGAC---TCATATAATAGTTCAAAC----TTTATCAAACTTTGAACCCA--AAAAT-AGAA-A-A-GTAGAAA-ACCTGCAATC--AAAC-TAA-TGA-TGTAAATGA-AGAC-TTTCACTGGCAATAAA---AC------ACAT------AA-TTAAATA--A----T-----TC-----AT--------TA----CCT--TGAGA-TGCAGAT----GATA-CA--GACCAGAT---TC-A-T--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC-T----A--AAA---CGCGGTA--GATT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAGAA--T-AC----AAA-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-AGGTGCA---CATTAGAACTGACGGTT-ATTT--AA----AT--------TTTAAGATT----AT-ATTTAGCAAAATGATGAAAGAAAA---ATGATA-AAACGAATATT-AGGTTCTCATAACATCATATA
gi|4 : ATGTAACCG--AGAAGA----AAGG--------------CAG---ATGT-AAGTT---TTCTC-A-GTTTATTA--TC-TATACAA------GAAG-CATTGATCTACAATAACAGA-AAAATAAT-AAA-G-AAACATA--GAAAT-GATAT-----A------AAGATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTAAAT--ATTCTGTAA-TAATTAAAATTTAGATTTTACAGAC---TCATATAA-AGTTCAAAC----TTAT-CAAACTTTGAAC-CA--AAAAT-AGAA---A-GTAGAAA-CCT-GCAATC--AAAC-TAA-TGA-TGTAAATGA-AGAC-TTTCACTGGCAATAAA---AC------ACAT------AA-TTAAATAT-AGAAGT-----AC-----AT---------A----CCT--TGAGA-TGCAGAT----GATAACA--GACCAGAT---TC-AAT--TAACTC-ATC---GCAAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC-T----ATAAAA---CGCGGTA--GATT-T----ATATTAA-AAG--TG-AAA-CTCTAT-ACTGGATA---AAGAA--T-AC-----AA-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-A-GTGCA---CATTAGAACTGACGGTT-ATTT--AA----AT--------TTTAAGATT----AT-ATTTAGC-AAATGATGAAAGAAAA---ATAATG-AAACG-ATATT-GGGTTCTCATAATATCATATAt
gi|5 : TGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTATT-----ATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAATG-AAACATGTATAAAT-GATATT--ACA------AATATGAAAATTACAATTTAAGTA-AGTTACGTACAGCAAACGTTTCAGAAGAATCTTATATTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTTAAATTTAGATCTTACAGAC---TCATATAATAGACTAAGCTAAGTT---CAAACTTTGACTGCA--AAAAT-ACAATACA-GTAGAAACACTTGC-ATC---AAA-TAA-T-A-TGTAAATGA-AGACTTTTCACTGGT-ATTAA---AC------ACAT------AG-TTACATA-------------------------------------CC--TAAGA-TGCAGAT----GATA-TA--GACCAGAT---TCAA-TAGTAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TTA-A-----AC-TATAAA--AAA---CGCGGTA--ACAT-T----ATATTAA-AAG--TT-AAA-CT---TTACTGGATA---AAGGAA-TCAC----AAA-ATGGACCAAT-GAAATCGAA-AACCAATGAAAATAACAGAATGAAAC-TTAACTCC-A-GCAAACTC---AATCCAAGGTGCG---CAT-----------GT---------A----AT--------CTGACGGTT----AT-ATTTAGC-------------AAAA---ATAATA-AAACGAACACT-GGGTTCTCATAATATCACAT
gi|6 : ---CAAATTTTCAAAACAGCAAAATTGCAATA-AAGTACAAA-CTTTGCAATTTAAAAA-AAA-TAAGTGTCAATCACAAAC-ATTAAGCAGCAAAATA---AG------ACAT------AA-ATAAACAT-G----A-----CT-----AT--------TATCATCCA--TTAGA-TGCAATC----GATA-CA--AGCTGTATAAATC-T-T--TACCAC-A-----A-AAAT--GT-G-C--ACTGCTCTGAC-TTGCA-----AT-T----T--AAA-----CGGTA--ACTTGC----AT-CTAA-AAG--T
gi|7 : tgtaacaagcagcaagaatagaaaatttcgtcttgatgttgtttgtttcgatgcaaatggatatgttggtaagatattaaggtatcaacctataagcaaaagagatatgattaaattagacaaagtgcaaatttgcattttcctttccttgggcaatatgttaccaattatacatttgtaaccaaagaaaatatgtctcatcaaatatcgacttacaaaa------ACCT------AAGTTAAA-AT-A----TGA---TC-----TTACA-----TA----CCA--CAAAA--GAATATCTAGGATA-CAAGGATCTGAT---C----T--TAACCC-GAA---G-AAAT--GTTATCTGACTTCTGAGATGTT--AGAGTCAC-A----G--AAATT-CGCGGTATAACTT-TTTTAACACTAA-ATGCCTGTAAATCTTTAT-ATTGGTGA---AAGAAAGT-AG----GAA-ATAGGCCAATTGAAAT--GAGAACCAATG-AAATGACAGAATAAAAC-TTTACTCC-A-GGAAACTC----ATCCGAAATGCGCCACACTAGATGTTTTGGTC-AATTCCAATAACATAACACATGTTT--GATTTTTAATGAATAAGCGAACTAATG-TAGAAAACAGATCACATAAACGAATA
gi|8 : agC-----AT--------TAAC--CCTATTAAGA-TGCAGAT----GATA-AA--AACCAGAT---TC-A------ACTC-ATC---A-AAAC--GT-AT---ACTGCTCTGAT-TT--C-----AC-T----ATAAGA---CGTGGTA--ACTT-T----ATATTTA-AAG--TG-AAA-CTCTATTATTGGATATTAAAGGAA-A-AT----GAA-AT-GGCTAAT-GAAATCAAAGAACCGATG-AAATAACAGAATAAAAC-TTAACT-CGA-CCAAACTC---AATCC-AGATGCG---CATTAAAACTTCCGGTT-AATT--GA----AC--------TTTAAGATT----AT-ACTTAAC--------------AAA---ATAATA-AATTGAATATC-AGTTTCTCATAATATCAgagatacgaatatacgaaaatagacattcatactacacata
gi|9 : agGAT----GAGA-AA--GAC-AGAT---TC-A-A--TTACTC-ATC---G-AAACA-GT-ATT--A-TGCACTGAC-TT--A-----ATAT----A--AAA---TGCG-TA----TT-T----ATATTAAGAAG--CG-AAA-CTCTATTATTGG-TA---AGGAAA-T-TCAATGGAA-AT-GAACAAT-GAAATCGAAAAACCAATG--AAT--CAGACTAAA-----TGCT-C-A-GCAAACTCGAAAAT-C-AGGTGCG----ATTAGAACTA--GGTT-AATT---A----AT--------TTCAATATT----CT-ATTTAGCAAAATGATGAAAG-CAA---AT-ATA-AA---AGTATTCAGGTTTCAATAATATCA-ATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): CAGCGGCCATGATGTTAACCGAGCAGCAAGGAAAATGAATGAAGATAGCTGATGATTTCTATTTCAGTTTTAATGATGTCAAAGAATTAAGGCATTGACCTAAGGAAAAACAAATTACAAATTAAGAGAAAAAAGTTACAAATTTACCAAATCGTTGAAAAAGTTACCAATAATACAGCAACAACATTGTAATGGAAAAAGAATAACGTTAGATAAGAAATTAACCTTTGAAACTCAACGAACAATTCTAATAATTACTCAACAACTTTAACTGCAATATACAATAAAGTTAATAAACTTTTGCAATAAAAAATAAGTATCACATACAAAAAGCATTGTAAGTAAGAAGTAAGACCTAAGTATATATGATTCTTACATCCACAAGATGTTGGACTGATCTTCCCACGAAAATGTATTGCTCTTGGCTACTCCCGTCATTTAACTACAGCAAATCGAGAGTGAACTTCGGTTAAAGCTAAATGTGTAAACTTTTATTCTTTATATTATCTGGTGAGATCAGAAAAATAGGGCGATATACGGCCTAATGAGAGAGTTGAAAAGAATGCAATGAATGGACACGAATAAAACGCTCTTTACATCCTCTAGGAAAACCTCACAAATCCGATAATGAGCGCCACAAGTAAGAATGGGTTTGGTCCAATACAAATAATCTTATTTGAATGAACGAAATTATGATGAAACAGATAGAGAGACGAATAAAGAATACATATAAGAAAATATGACATTCATTTGATCTTTACTATTTTCACATA
Unaligned ( gi|10 ): ACGCCATGTTTGTAATCGAACAGCAAGGAATAAGAATTCGGCTTTGATGAAAATGGATAAGTCGGAATTTACCTATAAGCAAAACAAATTACGAATGAATCAAACAAAAATTACAATCTTACATTTCATAAACTGTTGACAATAAGTTACTAATGATAGAGTATACATTTGTAAGGAAAAGAAATTGACCTTTGAACTTGCAAATTCAGACAATATACTCTAACAATTTAACTGGAAAAATATAATAAAGTAAAAACGTTGCAATTAAAAGGAAT
Unaligned ( gi|16 ): AAGCAACCAAGCAGCAAGGAATAAGAAGAATTTCAGCTTTATGTTGTTTATTTCGAGGAAAATGGATATGTTGATAACTGGCATTAAATTTACTTATATTAGGAAAACAAATCAG
Unaligned ( gi|22 ): TAAAAATAATAAATACATATAGAAAATTGAGATTCATACTATCACATA
Alignments
lowQualScore : 11 44444444444444 111 111 111 111111 1111 111111111111 1111 11111 1 111 55555555555 11 11 1111111 111111 777777777777777777777777777777777777777777 22222222 111111 11 11111111 2222222222 111 1111 1 111 1111111111 1 1 111 1 111 111 222222222222222222 1111 11111111111 111
lowQualScore : 00 1 8888 77777777777777 444 4 222 4 4 8 5 777 1 777777 8 1 1 33 777 4444 0 1 5 888888888888 3 7 0 0 0 5 0 1111 0 77777 5 0 2 33 3 3 11 0 1 444 0 0 8 2 00000000000 99 55 22 3 1 6 11 4 999 4 88 777 4444444 111111 999999999999999999999999999999999999999999 1 6 7777 3 0 44 1 555 00000000 6 000000 33 3 55 4 55555555 1111111111 333 777 5 0000 5 66 1 5 1 5 000 88 4444444444 5 1 2 5 0 5 2 5 1 1 5 5 000 1 1 000 333 55 1 666666666666666666 2222 5 3 99999999999 1 000 3 5 1 8 7
lowQualScore : .. . .... .............. ... . ... . . . . ... . ...... . . . .. ... .... . . . ............ . . . . . . . .... . ..... . . . .. . . .. . . ... . . . . ........... .. .. .. . . . .. . ... . .. ... ....... ...... .......................................... . . .... . . .. . ... ........ . ...... .. . .. . ........ .......... ... ... . .... . .. . . . . ... .. .......... . . . . . . . . . . . . ... . . ... ... .. . .................. .... . . ........... . ... . . . . .
lowQualScore : 66 1 5555 00000000000000 000 4 777 0 0 0 3 666 9 222222 9 1 8 88 666 3333 7 4 7 777777777777 0 9 1 6 7 7 3 8888 8 88888 0 8 5 55 2 2 22 6 4 000 8 8 0 2 99999999999 22 88 77 2 0 7 99 4 999 4 33 000 7777777 555555 666666666666666666666666666666666666666666 0 7 1111 3 3 66 0 888 11111111 2 666666 66 6 00 4 33333333 3333333333 999 888 0 6666 0 99 4 7 7 4 000 00 1111111111 7 4 3 7 7 7 3 7 0 4 7 7 000 4 7 000 333 99 9 666666666666666666 1111 7 9 99999999999 4 000 6 7 7 0 0
consensus : ATGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATT--ACA------AANATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTAAAATTTAGATCTTACAGAC---TCATATAATA-GCTCAAAC----T--T---CAAACTTT--GAAC-GCAAAAATACAATAAAGTAGAAAC-CTTGCAATC--AAAATAA-TAA-CGTAAATGA-AGAC-TTTCACTGGTAATAA---AAC------ACAT------AATTAAATA----T-A----T-----TC------------ACA-------TACCNTAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--ACTT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AAA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATGAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-AATT--AA----AT--------TTTAAGATT----AT-ATTTAGCGAAATGATGAAAGAAAA---ATAATA-AAACGAATATT-AGGTTCTCATAATATCATATA
Reference ( family-2613 ) : ATGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATT--ACA------AANATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACATGTATTCTGTAAATAATTAAAATTTAGATCTTACAGAC---TCATATAATA-GTTCAAAC----T--T---CAAACTTT--GAAC-GCAAAAATACAATAAAGTAGAAAC-CTTGCAATC--AAAATAA-TAA-CGTAAATGA-AGAC-TTTCACTGGTAATAA---AAC------ACAT------AATTAAATA----T-A----T-----TC------------ATA-------TACCNTAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--ACTT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AAA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATGAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-AATT--AA----AT--------TTTAAGATT----AT-ATTTAGCGAAATGATGAAAGAAAA---ATAATA-AAACGAATATT-AGGTTCTCATAATATCATATA
gi|10 : AATTGACCTTT-GAACTTGCAAAT---TCAGACAATATACTCTAAC-------------AATTT----AACTGGAAAAATATAATAAAGTAAAAAC-GTTGCAATT--AAAA
gi|11 : acgccatgtttgtaatcgaacagcaaggaataagaattcggctttgatgaaaatggataagtcggaatttacctataagcaaaacaaattacgaatgaatcaaacaaaaattacaatcttacatttcataaactgttgacaataagttactaatgatagagtatacatttgtaaggaaaagaGCAACTG--AGAAGA----AAGG--------------TGG---GTGTTG-GTT---T-TTC-A-GCTTA-TT--TAATATACAAT-----GAAG-------------------GACAAAATA-C-AAA-GTAAAAACATAG-AAT-AATAT------------------AAAATTACAAGTTA---------ACCCATACTAAACGTTTCAT----ATTTT-TATTTTA------AAAA-GATATAggaat
gi|12 : A----AAGC--------------CAG---ATGCTGAGTT---T-TTCCA-GTTTAATT--TCATATATAA------GAAG-TATTTACCGACAATAGCTGACAAAATA-TAAAA-G-AAACATATTGAAAT-TTTATT--ACA------AACATGA-----ACAGTTTTAGTA-AATAACCCACAGTAAA
gi|13 : TTGCAATC--AAAATAA-TA--TGTAAATGA-AGAC-ATCTACTGGTAATAA---AATGCATGTACAT------AATTAAATA----C-A----T-----TTTGTAT-------ATAAGTTACCTACCTTAAGG-TGTAGAT----TAT-ATA--GACCAGAT---TCAAT--TACTTC-ATC---C-AAA
gi|14 : TTGCAATC--AAAATAA-TA--TGTAAATGA-AGAC-CTCTACTGGTAATAA---AAT------ACATGTACGTAATTAAATA----C-A----T-----TTTGTATATAAGTTACA-------TACCTTAAGG-TGTAGAT----GAT-ATA--GACCAGAT---TCAAT--TACCTC-AT
gi|15 : TGTAACCG--AGCAGC----AAGGAAAAAGAATGAAATCAGCTGATGTTG--TTCTAT-TTC-ATATTTAATAATTCA-----AA------GAAGGCATTGACCTA-AA-AAGAAACAAATTA-C-AAA-
gi|17 : cgcacacgtcaccgtgtatgAA-TAA-CGTAAATGA-ACAC-TTTTACTGGTAATAA---AAC------GCAT------AATTTGATA----T-A----TAGAAATT------------ACA-------TACCGCAATACCGCATAT----GAA-ATA--GA-CAG-T---TC-TT--T--CTCGAT------AAGCCGGT-ATT--Att
gi|18 : A-TAA-CGTAAATGA-ACAC-TTTTACTGGTAATAA---AAC------GCAT------AATTTGATA----T-A----TAGAAATT------------AC--------TACCGCAATACCGCATAT----GAA-ATA--GA-CAG-T---TC-TT--T--CTCGAT------AAGCCGGT-ATT--AC
gi|19 : TGAATT---T-CTC-G-GTTTAATT--TCATGTACAATTTAAGAAAA-CATTGACCTACAATAACGGACAA-----------------ATATAGAAAT-GATATT--ACA------AACATGAAAATGACAATTTTAGTACAGT
gi|2 : tgTGTAACCG--AGCAGC----AAGGAAAAAGAATGAAATCAGCTGATGTTG--TTCTAT-TTC-ATATTTAATAATTCA-----AA------GAAGGCATTGGCCTAAAAGAA--AACAAATTA-C-AAA-T------TAGAGAAAAAGACATTTTACACTTCGGATTACAAAAAT--CG--TTGA-CA-AGTTACCAAAAATA-------CAG--------CACACTTTGTAATGGAAAAAGA-----ATACGTTCGATAAA--ATTAACCTTT-GAACTCACGAACAATTC-TAAAATT-ACTTAAAC-------------AACTTT--AACT-GCAAAAATACAATAAAGTATAAAC-TTTGCAATTA-AAAATAAGTAT-CACATACAA-AAGC----CATT-GTAGTAAAGTAAG------ACCT------AAGTAAATA----TAA----T-----TCTT----------ACA-------TACCACAAGA-TGTAGCT----GAC-ATA--AGTTGGAT---CT-AT-----CT---TCCGAG-AAAT--GT-A-T--ACTGCTCTGAT-TT--A-----AC--A----A--AGAAATCGCGGTA--ACTT-T----AAACTAA-ATG--TGTAAA-CTTTATTATTGGTGA---AAGAAAA-T-AG----GAATAT-G-CCAAT-GAAATGAAAGAACCAATG-AAATGACAGAATAAGACTTTTACT-C-AGGAAAACTC---AATCC-GAATGCG---CAATAGAATTTTTTGTTCAATT--CA----AA--------TATAAAATT----TT-A-TTAATGAAACGATATGAGAAAA---CAAATA-AAACGAATgt
gi|20 : tcgcacacgtcaccgtgtatgACTG-TAGTAA---AG-------ACAT------GAATAAATA----TGA----T-----CC------------ATA---------CCTCAAGA-TGCAtaaaatacatatagaaaattgacattcatactatcacata
gi|21 : aactgcaaagtacaatataaaatgtaattttgttttatgagcaagtgtcacatacaaatatgtTGTAACCGTAAGGAGATCGAAAGG--------------CAG---AGGTTGAGTT---T-CTC-A-GTTTATTT--TCATATACAA------GAGG-TATTGACCTACAATAATAGACAAAATA-T-A
gi|23 : AACCGG-AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTg
gi|24 : gaTGTAACTG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---
gi|25 : gtaacC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----T--AAA---
gi|3 : ATGTAACCG--AGAAGA----AAGG--------------CAG---ATGTTAAGTT---T-CTC-A-GTTTATTA--TCATATACAA------GAAG-CATTGATCTACAATAACAGAAAAAATA-T-AAATG-AAACATATAGAAAT-GATATT--ACA------AAGATGAAAATGACAATTTAAGTA-AGTTACCTACAGGAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACAATGTACATGTATTCTGTAAATAATTAAAATTTAGATTTTACAGAC---TCATATAATA-GTTCAAAC----T--TTATCAAACTTT--GAAC-CCAAAAATAGAA--AAGTAGAAAA-CCTGCAATC--AAACTAA-TGA-TGTAAATGA-AGAC-TTTCACTGGCAATAA---AAC------ACAT------AATTAAATA------A----T-----TC------------AT--------TACCTTGAGA-TGCAGAT----GAT-ACA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--GATT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AA--T-AC----AAA-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-AGGTGCA---CATTAGAACTGACGGTT-ATTT--AA----AT--------TTTAAGATT----AT-ATTTAGCAAAATGATGAAAGAAAA---ATGATA-AAACGAATATT-AGGTTCTCATAACATCATATA
gi|4 : ATGTAACCG--AGAAGA----AAGG--------------CAG---ATGT-AAGTT---TTCTC-A-GTTTATTA--TC-TATACAA------GAAG-CATTGATCTACAATAACAGA-AAAATAAT-AAA-G-AAACATA--GAAAT-GATAT-----A------AAGATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTAAA--TATTCTGT-AATAATTAAAATTTAGATTTTACAGAC---TCATATAA-A-GTTCAAAC----TTAT---CAAACTTT--GAAC--CAAAAAT---AGAAAGTAGAAAC-C-TGCAATC--AAACTAA-TGA-TGTAAATGA-AGAC-TTTCACTGGCAATAA---AAC------ACAT------AATTAAATA----T-AGAAGT-------------------ACA-------TACCTTGAGA-TGCAGAT----GATAACA--GACCAGAT---TCAAT--TAACTC-ATC---GCAAAC--GT-ATT--ACTGCTCTGAT-TT--A-----ACTAT----A--AAA---CGCGGTA--GATT-T----ATATTAA-AAG--TG-AAA-CTCTA-TACTGGATA---AAG--AA-T-AC-----AA-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-A-GTGCA---CATTAGAACTGACGGTT-ATTT--AA----AT--------TTTAAGATT----AT-ATTTAGC-AAATGATGAAAGAAAA---ATAATG-AAACG-ATATT-GGGTTCTCATAATATCATATAt
gi|5 : TGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTATT-----ATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAATG-AAACATGTATAAAT-GATATT--ACA------AATATGAAAATTACAATTTAAGTA-AGTTACGTACAGCAAACGTTTCAGAAGAATCTTATATTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTTAAATTTAGATCTTACAGAC---TCATATAATA-GACTAAGCTAAGT--T---CAAACTTT--GACT-GCAAAAATACAATACAGTAGAAACACTTGC-ATC---AAATAA-T-A-TGTAAATGA-AGACTTTTCACTGGT-ATTA---AAC------ACAT------AGTTA----------------------C------------ATA----------CCTAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TCAATAGTAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TTA-A-----AC--TATAAA--AAA---CGCGGTA--ACAT-T----ATATTAA-AAG--TT-AAA-CT---TTACTGGATA---AAG-GAA-TCAC----AAA-ATGGACCAAT-GAAATCGAA-AACCAATGAAAATAACAGAATGAAAC-TTAACTCC-A-GCAAACTC---AATCCAAGGTGCG---CAT-----------GT---------A----AT--------CTGACGGTT----AT-ATTTAGC-------------AAAA---ATAATA-AAACGAACACT-GGGTTCTCATAATATCACAT
gi|6 : ---CAAATTTTCAAAACAGCAAAATTGCAATAAAGTACAAAC-TTTGCAATTTAAAAAAAA-TAAGTGTCAATCACAAAC-ATTAAGCAGCAAAAT---AAG------ACAT------AAATAAACATGACT-A----TTA---TC------------AT----------CCATTAGA-TGCAATC----GAT-ACA--AGCTGTATAAATC-TT--TACCAC-A-----A-AAAT--GT-G-C--ACTGCTCTGAC-TTGCA-----AT--T----T--AAA-----CGGTA--ACTTGC----AT-CTAA-AAG--T
gi|7 : tgtaacaagcagcaagaatagaaaatttcgtcttgatgttgtttgtttcgatgcaaatggatatgttggtaagatattaaggtatcaacctataagcaaaagagatatgattaaattagacaaagtgcaaatttgcattttcctttccttgggcaatatgttaccaattatacatttgtaaccaaagaaaatatgtctcatcaaatatcgacttacaaaaAAATA----TGA----TC----TT------------ACA-------TACCACAAAA--GAATATCTAGGAT-ACAAGGATCTGAT---C---T--TAACCC-GAA---G-AAAT--GTTATCTGACTTCTGAGATGTT--AGAGTCAC--A----G--AAATT-CGCGGTATAACTT-TTTTAACACTAA-ATGCCTGTAAATCTTTAT-ATTGGTGA---AAG-AAAGT-AG----GAA-ATAGGCCAATTGAAAT--GAGAACCAATG-AAATGACAGAATAAAAC-TTTACTCC-A-GGAAACTC----ATCCGAAATGCGCCACACTAGATGTTTTGGTC-AATTCCAATAACATAACACATGTTT--GATTTTTAATGAATAAGCGAACTAATG-TAGAAAACAGATCACATAAACGAATA
gi|8 : agacctaagttaTAAGA-TGCAGAT----GAT-AAA--AACCAGAT---TC-A-----ACTC-ATC---A-AAAC--GT-AT---ACTGCTCTGAT-TT--C-----AC--T----ATAAGA---CGTGGTA--ACTT-T----ATATTTA-AAG--TG-AAA-CTCTATTATTGGATATTAAAG-GAA-A-AT----GAA-AT-GGCTAAT-GAAATCAAAGAACCGATG-AAATAACAGAATAAAAC-TTAACT-CGA-CCAAACTC---AATCC-AGATGCG---CATTAAAACTTCCGGTT-AATT--GA----AC--------TTTAAGATT----AT-ACTTAAC--------------AAA---ATAATA-AATTGAATATC-AGTTTCTCATAATATCAgagatacgaatatacgaaaatagacattcatactacacata
gi|9 : agcattaaccctatGAT----GAG-AAA--GAC-AGAT---TC-AA--TTACTC-ATC---G-AAACA-GT-ATT--A-TGCACTGAC-TT--A-----ATA-T----A--AAA---TGCG-TA----TT-T----ATATTAAGAAG--CG-AAA-CTCTATTATTGG-TA---AGG-AAA-T-TCAATGGAA-AT-GAACAAT-GAAATCGAAAAACCAATG--AAT--CAGACTAAA-----TGCT-C-A-GCAAACTCGAAAAT-C-AGGTGCG----ATTAGAACTA--GGTT-AATT---A----AT--------TTCAATATT----CT-ATTTAGCAAAATGATGAAAG-CAA---AT-ATA-AA---AGTATTCAGGTTTCAATAATATCA-ATA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): CAGCGGCCATGATGTTAACCGAGCAGCAAGGAAAATGAATGAAGATAGCTGATGATTTCTATTTCAGTTTTAATGATGTCAAAGAATTAAGGCATTGACCTAAGGAAAAACAAATTACAAATTAAGAGAAAAAAGTTACAAATTTACCAAATCGTTGAAAAAGTTACCAATAATACAGCAACAACATTGTAATGGAAAAAGAATAACGTTAGATAAGAAATTAACCTTTGAAACTCAACGAACAATTCTAATAATTACTCAACAACTTTAACTGCAATATACAATAAAGTTAATAAACTTTTGCAATAAAAAATAAGTATCACATACAAAAAGCATTGTAAGTAAGAAGTAAGACCTAAGTATATATGATTCTTACATCCACAAGATGTTGGACTGATCTTCCCACGAAAATGTATTGCTCTTGGCTACTCCCGTCATTTAACTACAGCAAATCGAGAGTGAACTTCGGTTAAAGCTAAATGTGTAAACTTTTATTCTTTATATTATCTGGTGAGATCAGAAAAATAGGGCGATATACGGCCTAATGAGAGAGTTGAAAAGAATGCAATGAATGGACACGAATAAAACGCTCTTTACATCCTCTAGGAAAACCTCACAAATCCGATAATGAGCGCCACAAGTAAGAATGGGTTTGGTCCAATACAAATAATCTTATTTGAATGAACGAAATTATGATGAAACAGATAGAGAGACGAATAAAGAATACATATAAGAAAATATGACATTCATTTGATCTTTACTATTTTCACATA
Unaligned ( gi|16 ): AAGCAACCAAGCAGCAAGGAATAAGAAGAATTTCAGCTTTATGTTGTTTATTTCGAGGAAAATGGATATGTTGATAACTGGCATTAAATTTACTTATATTAGGAAAACAAATCAG
Unaligned ( gi|22 ): TAAAAATAATAAATACATATAGAAAATTGAGATTCATACTATCACATA
Alignments
lowQualScore : 11 44444444444444 111 111 111 111111 1111 111111111111 1111 11111 111 1 111 2222222 11 11 11 1111111 111111 7777777777777777777777777777777 22222222 111111 11 11111111 2222222222 111 1111 1 111 1111111111 1 1 111 1 111 111 222222222222222222 1111 11111111111 111
lowQualScore : 00 1 8888 77777777777777 444 4 222 4 4 8 5 777 1 777777 8 1 1 33 777 4444 0 1 5 888888888888 3 7 0 0 0 5 0 1111 0 77777 5 0 2 33 3 3 3 777 3 3 0 0 777 8888888 11 0 33 3 5 8 0 33 4 999 4 88 777 4444444 111111 0 9999999999999999999999999999999 2 4 6 7777 3 0 44 1 555 00000000 6 000000 33 3 55 4 55555555 1111111111 333 777 5 0000 5 66 1 5 1 5 000 88 4444444444 5 1 2 5 0 5 2 5 1 1 5 5 000 1 1 000 333 55 1 666666666666666666 2222 5 3 99999999999 1 000 3 5 1 8 7
lowQualScore : .. . .... .............. ... . ... . . . . ... . ...... . . . .. ... .... . . . ............ . . . . . . . .... . ..... . . . .. . . . ... . . . . ... ....... .. . .. . . . . .. . ... . .. ... ....... ...... . ............................... . . . .... . . .. . ... ........ . ...... .. . .. . ........ .......... ... ... . .... . .. . . . . ... .. .......... . . . . . . . . . . . . ... . . ... ... .. . .................. .... . . ........... . ... . . . . .
lowQualScore : 66 1 5555 00000000000000 000 4 777 0 0 0 3 666 9 222222 9 1 8 88 666 3333 7 4 7 777777777777 0 9 1 6 7 7 3 8888 8 88888 0 8 5 55 2 2 2 555 2 2 0 2 555 0000000 00 6 00 8 6 0 1 66 4 999 4 33 000 7777777 555555 2 0000000000000000000000000000000 1 5 7 1111 3 3 66 0 888 11111111 2 666666 66 6 00 4 33333333 3333333333 999 888 0 6666 0 99 4 7 7 4 000 00 1111111111 7 4 3 7 7 7 3 7 0 4 7 7 000 4 7 000 333 99 9 666666666666666666 1111 7 9 99999999999 4 000 6 7 7 0 0
consensus : ATGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATT--ACA------AANATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTAAAATTTAGATCTTACAGAC---TCATATAATAG-CTCA---AACT--T---CAAACTTT--GAAC-GCAAAAATACAATAAAGTAGAAAC-CTTGCAATC--AAAATAA-TAA-CGTAAATGA-AGAC-TTTCACTGGTAATAA---AAC------ACAT------AATTAAATA----T-A----T-----TT------------ACATACCNTAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--ACTT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AAA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATGAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-AATT--AA----AT--------TTTAAGATT----AT-ATTTAGCGAAATGATGAAAGAAAA---ATAATA-AAACGAATATT-AGGTTCTCATAATATCATATA
Reference ( family-2613 ) : ATGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATT--ACA------AANATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTAAAATTTAGATCTTACAGAC---TCATATAATAG-CTCA---AACT--T---CAAACTTT--GAAC-GCAAAAATACAATAAAGTAGAAAC-CTTGCAATC--AAAATAA-TAA-CGTAAATGA-AGAC-TTTCACTGGTAATAA---AAC------ACAT------AATTAAATA----T-A----T-----TC------------ACATACCNTAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--ACTT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AAA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATGAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-AATT--AA----AT--------TTTAAGATT----AT-ATTTAGCGAAATGATGAAAGAAAA---ATAATA-AAACGAATATT-AGGTTCTCATAATATCATATA
gi|11 : GCAACTG--AGAAGA----AAGG--------------TGG---GTGTTG-GTT---T-TTC-A-GCTTA-TT--TAATATACAAT-----GAAG-------------------GACAAAATA-C-AAA-GTAAAAACATAG-AAT-AATAT------------------AAAATTACAAGTTA---------ACCCATACTAAACGTTTCAT----ATTTT-TATTTTA------AAAA-GATATA
gi|12 : A----AAGC--------------CAG---ATGCTGAGTT---T-TTCCA-GTTTAATT--TCATATATAA------GAAG-TATTTACCGACAATAGCTGACAAAATA-TAAAA-G-AAACATATTGAAAT-TTTATT--ACA------AACATGA-----ACAGTTTTAGTA-AATAACCCACAGTAAA
gi|13 : TTGCAATC--AAAATAA-TA--TGTAAATGA-AGAC-ATCTACTGGTAATAA---AATGCATGTACAT------AATTAAATA----C-A----T-----TTTGTATATAAGTTACCTACCTTAAGG-TGTAGAT----TAT-ATA--GACCAGAT---TCAAT--TACTTC-ATC---C-AAA
gi|14 : TTGCAATC--AAAATAA-TA--TGTAAATGA-AGAC-CTCTACTGGTAATAA---AAT------ACATGTACGTAATTAAATA----C-A----T-----TTTGTATATAAGTTACATACCTTAAGG-TGTAGAT----GAT-ATA--GACCAGAT---TCAAT--TACCTC-AT
gi|15 : TGTAACCG--AGCAGC----AAGGAAAAAGAATGAAATCAGCTGATGTTG--TTCTAT-TTC-ATATTTAATAATTCA-----AA------GAAGGCATTGACCTA-AA-AAGAAACAAATTA-C-AAA-
gi|17 : cgcacacgtcaccgtgtatgAA-TAA-CGTAAATGA-ACAC-TTTTACTGGTAATAA---AAC------GCAT------AATTTGATA----T-A----TAGAAATT------------ACATACCGCAATACCGCATAT----GAA-ATA--GA-CAG-T---TC-TT--T--CTCGAT------AAGCCGGT-ATT--Att
gi|18 : A-TAA-CGTAAATGA-ACAC-TTTTACTGGTAATAA---AAC------GCAT------AATTTGATA----T-A----TAGAAATT------------AC-TACCGCAATACCGCATAT----GAA-ATA--GA-CAG-T---TC-TT--T--CTCGAT------AAGCCGGT-ATT--AC
gi|19 : TGAATT---T-CTC-G-GTTTAATT--TCATGTACAATTTAAGAAAA-CATTGACCTACAATAACGGACAA-----------------ATATAGAAAT-GATATT--ACA------AACATGAAAATGACAATTTTAGTACAGT
gi|2 : tgTGTAACCG--AGCAGC----AAGGAAAAAGAATGAAATCAGCTGATGTTG--TTCTAT-TTC-ATATTTAATAATTCA-----AA------GAAGGCATTGGCCTAAAAGAA--AACAAATTA-C-AAA-T------TAGAGAAAAAGACATTTTACACTTCGGATTACAAAAAT--CG--TTGA-CA-AGTTACCAAAAATA-------CAG--------CACACTTTGTAATGGAAAAAGA-----ATACGTTCGATAAA--ATTAACCTTT-GAACTCACGAACAATTC-TAAAATTA-CTTA---AAC---------AACTTT--AACT-GCAAAAATACAATAAAGTATAAAC-TTTGCAATTA-AAAATAAGTAT-CACATACAA-AAGC----CATT-GTAGTAAAGTAAG------ACCT------AAGTAAATA----TAA----T-----TCTT----------ACATACCACAAGA-TGTAGCT----GAC-ATA--AGTTGGAT---CT-AT-----CT---TCCGAG-AAAT--GT-A-T--ACTGCTCTGAT-TT--A-----AC--A----A--AGAAATCGCGGTA--ACTT-T----AAACTAA-ATG--TGTAAA-CTTTATTATTGGTGA---AAGAAAA-T-AG----GAATAT-G-CCAAT-GAAATGAAAGAACCAATG-AAATGACAGAATAAGACTTTTACT-C-AGGAAAACTC---AATCC-GAATGCG---CAATAGAATTTTTTGTTCAATT--CA----AA--------TATAAAATT----TT-A-TTAATGAAACGATATGAGAAAA---CAAATA-AAACGAATgt
gi|20 : tcgcacacgtcaccgtgtatgACTG-TAGTAA---AG-------ACAT------GAATAAATA----T-G----A-----TC-------------CATACCTCAAGA-TGCAtaaaatacatatagaaaattgacattcatactatcacata
gi|21 : aactgcaaagtacaatataaaatgtaattttgttttatgagcaagtgtcacatacaaatatgtTGTAACCGTAAGGAGATCGAAAGG--------------CAG---AGGTTGAGTT---T-CTC-A-GTTTATTT--TCATATACAA------GAGG-TATTGACCTACAATAATAGACAAAATA-T-A
gi|23 : AACCGG-AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTg
gi|24 : gaTGTAACTG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---
gi|25 : gtaacC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----T--AAA---
gi|3 : ATGTAACCG--AGAAGA----AAGG--------------CAG---ATGTTAAGTT---T-CTC-A-GTTTATTA--TCATATACAA------GAAG-CATTGATCTACAATAACAGAAAAAATA-T-AAATG-AAACATATAGAAAT-GATATT--ACA------AAGATGAAAATGACAATTTAAGTA-AGTTACCTACAGGAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACAATGTACATGTATTCTGTAAATAATTAAAATTTAGATTTTACAGAC---TCATATAATAG-TTCA---AACT--TTATCAAACTTT--GAAC-CCAAAAATAGAA--AAGTAGAAAA-CCTGCAATC--AAACTAA-TGA-TGTAAATGA-AGAC-TTTCACTGGCAATAA---AAC------ACAT------AATTAAATA------A----T-----TC------------AT-TACCTTGAGA-TGCAGAT----GAT-ACA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--GATT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AA--T-AC----AAA-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-AGGTGCA---CATTAGAACTGACGGTT-ATTT--AA----AT--------TTTAAGATT----AT-ATTTAGCAAAATGATGAAAGAAAA---ATGATA-AAACGAATATT-AGGTTCTCATAACATCATATA
gi|4 : ATGTAACCG--AGAAGA----AAGG--------------CAG---ATGT-AAGTT---TTCTC-A-GTTTATTA--TC-TATACAA------GAAG-CATTGATCTACAATAACAGA-AAAATAAT-AAA-G-AAACATA--GAAAT-GATAT-----A------AAGATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTAAA--TATTCTGT-AATAATTAAAATTTAGATTTTACAGAC---TCATATAA-AG-TTCA---AACTTAT---CAAACTTT--GAAC--CAAAAAT---AGAAAGTAGAAAC-C-TGCAATC--AAACTAA-TGA-TGTAAATGA-AGAC-TTTCACTGGCAATAA---AAC------ACAT------AATTAAATA----T-AGAAGT-------------------ACATACCTTGAGA-TGCAGAT----GATAACA--GACCAGAT---TCAAT--TAACTC-ATC---GCAAAC--GT-ATT--ACTGCTCTGAT-TT--A-----ACTAT----A--AAA---CGCGGTA--GATT-T----ATATTAA-AAG--TG-AAA-CTCTA-TACTGGATA---AAG--AA-T-AC-----AA-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-A-GTGCA---CATTAGAACTGACGGTT-ATTT--AA----AT--------TTTAAGATT----AT-ATTTAGC-AAATGATGAAAGAAAA---ATAATG-AAACG-ATATT-GGGTTCTCATAATATCATATAt
gi|5 : TGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTATT-----ATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAATG-AAACATGTATAAAT-GATATT--ACA------AATATGAAAATTACAATTTAAGTA-AGTTACGTACAGCAAACGTTTCAGAAGAATCTTATATTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTTAAATTTAGATCTTACAGAC---TCATATAATAGACTAAGCTAAGT--T---CAAACTTT--GACT-GCAAAAATACAATACAGTAGAAACACTTGC-ATC---AAATAA-T-A-TGTAAATGA-AGACTTTTCACTGGT-ATTA---AAC------ACAT------AGTT------------------------------------ACATACC-TAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TCAATAGTAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TTA-A-----AC--TATAAA--AAA---CGCGGTA--ACAT-T----ATATTAA-AAG--TT-AAA-CT---TTACTGGATA---AAG-GAA-TCAC----AAA-ATGGACCAAT-GAAATCGAA-AACCAATGAAAATAACAGAATGAAAC-TTAACTCC-A-GCAAACTC---AATCCAAGGTGCG---CAT-----------GT---------A----AT--------CTGACGGTT----AT-ATTTAGC-------------AAAA---ATAATA-AAACGAACACT-GGGTTCTCATAATATCACAT
gi|6 : ---CAAATTTTCAAAACAGCAAAATTGCAATAAAGTACAAAC-TTTGCAATTTAAAAAAAA-TAAGTGTCAATCACAAAC-ATTAAGCAGCAAAAT---AAG------ACAT------AAATAAACATGACT-A----T-----TA------------TCAT-CCATTAGA-TGCAATC----GAT-ACA--AGCTGTATAAATC-TT--TACCAC-A-----A-AAAT--GT-G-C--ACTGCTCTGAC-TTGCA-----AT--T----T--AAA-----CGGTA--ACTTGC----AT-CTAA-AAG--T
gi|7 : tgtaacaagcagcaagaatagaaaatttcgtcttgatgttgtttgtttcgatgcaaatggatatgttggtaagatattaaggtatcaacctataagcaaaagagatatgattaaattagacaaagtgcaaatttgcattttcctttccttgggcaatatgttaccaattatacatttgtaaccaaagaaaatatgtctcatcaaatatcgacttacaaaaAAATA----TGA----TC----TT------------ACATACCACAAAA--GAATATCTAGGAT-ACAAGGATCTGAT---C---T--TAACCC-GAA---G-AAAT--GTTATCTGACTTCTGAGATGTT--AGAGTCAC--A----G--AAATT-CGCGGTATAACTT-TTTTAACACTAA-ATGCCTGTAAATCTTTAT-ATTGGTGA---AAG-AAAGT-AG----GAA-ATAGGCCAATTGAAAT--GAGAACCAATG-AAATGACAGAATAAAAC-TTTACTCC-A-GGAAACTC----ATCCGAAATGCGCCACACTAGATGTTTTGGTC-AATTCCAATAACATAACACATGTTT--GATTTTTAATGAATAAGCGAACTAATG-TAGAAAACAGATCACATAAACGAATA
gi|8 : agacctaagttaTAAGA-TGCAGAT----GAT-AAA--AACCAGAT---TC-A-----ACTC-ATC---A-AAAC--GT-AT---ACTGCTCTGAT-TT--C-----AC--T----ATAAGA---CGTGGTA--ACTT-T----ATATTTA-AAG--TG-AAA-CTCTATTATTGGATATTAAAG-GAA-A-AT----GAA-AT-GGCTAAT-GAAATCAAAGAACCGATG-AAATAACAGAATAAAAC-TTAACT-CGA-CCAAACTC---AATCC-AGATGCG---CATTAAAACTTCCGGTT-AATT--GA----AC--------TTTAAGATT----AT-ACTTAAC--------------AAA---ATAATA-AATTGAATATC-AGTTTCTCATAATATCAgagatacgaatatacgaaaatagacattcatactacacata
gi|9 : agcattaaccctatGAT----GAG-AAA--GAC-AGAT---TC-AA--TTACTC-ATC---G-AAACA-GT-ATT--A-TGCACTGAC-TT--A-----ATA-T----A--AAA---TGCG-TA----TT-T----ATATTAAGAAG--CG-AAA-CTCTATTATTGG-TA---AGG-AAA-T-TCAATGGAA-AT-GAACAAT-GAAATCGAAAAACCAATG--AAT--CAGACTAAA-----TGCT-C-A-GCAAACTCGAAAAT-C-AGGTGCG----ATTAGAACTA--GGTT-AATT---A----AT--------TTCAATATT----CT-ATTTAGCAAAATGATGAAAG-CAA---AT-ATA-AA---AGTATTCAGGTTTCAATAATATCA-ATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): CAGCGGCCATGATGTTAACCGAGCAGCAAGGAAAATGAATGAAGATAGCTGATGATTTCTATTTCAGTTTTAATGATGTCAAAGAATTAAGGCATTGACCTAAGGAAAAACAAATTACAAATTAAGAGAAAAAAGTTACAAATTTACCAAATCGTTGAAAAAGTTACCAATAATACAGCAACAACATTGTAATGGAAAAAGAATAACGTTAGATAAGAAATTAACCTTTGAAACTCAACGAACAATTCTAATAATTACTCAACAACTTTAACTGCAATATACAATAAAGTTAATAAACTTTTGCAATAAAAAATAAGTATCACATACAAAAAGCATTGTAAGTAAGAAGTAAGACCTAAGTATATATGATTCTTACATCCACAAGATGTTGGACTGATCTTCCCACGAAAATGTATTGCTCTTGGCTACTCCCGTCATTTAACTACAGCAAATCGAGAGTGAACTTCGGTTAAAGCTAAATGTGTAAACTTTTATTCTTTATATTATCTGGTGAGATCAGAAAAATAGGGCGATATACGGCCTAATGAGAGAGTTGAAAAGAATGCAATGAATGGACACGAATAAAACGCTCTTTACATCCTCTAGGAAAACCTCACAAATCCGATAATGAGCGCCACAAGTAAGAATGGGTTTGGTCCAATACAAATAATCTTATTTGAATGAACGAAATTATGATGAAACAGATAGAGAGACGAATAAAGAATACATATAAGAAAATATGACATTCATTTGATCTTTACTATTTTCACATA
Unaligned ( gi|10 ): ACGCCATGTTTGTAATCGAACAGCAAGGAATAAGAATTCGGCTTTGATGAAAATGGATAAGTCGGAATTTACCTATAAGCAAAACAAATTACGAATGAATCAAACAAAAATTACAATCTTACATTTCATAAACTGTTGACAATAAGTTACTAATGATAGAGTATACATTTGTAAGGAAAAGAAATTGACCTTTGAACTTGCAAATTCAGACAATATACTCTAACAATTTAACTGGAAAAATATAATAAAGTAAAAACGTTGCAATTAAAAGGAAT
Unaligned ( gi|16 ): AAGCAACCAAGCAGCAAGGAATAAGAAGAATTTCAGCTTTATGTTGTTTATTTCGAGGAAAATGGATATGTTGATAACTGGCATTAAATTTACTTATATTAGGAAAACAAATCAG
Unaligned ( gi|22 ): TAAAAATAATAAATACATATAGAAAATTGAGATTCATACTATCACATA
Alignments
lowQualScore : 11 44444444444444 111 111 111 111111 1111 111111111111 1111 11111 111 1 111 2222222 11 11 11 1111111 111111 666666666666666666666666666666 22222222 111111 11 11111111 2222222222 111 1111 1 111 1111111111 1 1 111 1 111 111 222222222222222222 1111 11111111111 111
lowQualScore : 00 1 8888 77777777777777 444 4 222 4 4 8 5 777 1 777777 8 1 1 33 777 4444 0 1 5 888888888888 3 7 0 0 0 5 0 1111 0 77777 5 0 2 33 3 3 3 777 3 3 0 0 777 8888888 11 0 33 3 5 8 0 33 4 999 4 88 777 4444444 111111 3 999999999999999999999999999999 2 4 6 7777 3 0 44 1 555 00000000 6 000000 33 3 55 4 55555555 1111111111 333 777 5 0000 5 66 1 5 1 5 000 88 4444444444 5 1 2 5 0 5 2 5 1 1 5 5 000 1 1 000 333 55 1 666666666666666666 2222 5 3 99999999999 1 000 3 5 1 8 7
lowQualScore : .. . .... .............. ... . ... . . . . ... . ...... . . . .. ... .... . . . ............ . . . . . . . .... . ..... . . . .. . . . ... . . . . ... ....... .. . .. . . . . .. . ... . .. ... ....... ...... . .............................. . . . .... . . .. . ... ........ . ...... .. . .. . ........ .......... ... ... . .... . .. . . . . ... .. .......... . . . . . . . . . . . . ... . . ... ... .. . .................. .... . . ........... . ... . . . . .
lowQualScore : 66 1 5555 00000000000000 000 4 777 0 0 0 3 666 9 222222 9 1 8 88 666 3333 7 4 7 777777777777 0 9 1 6 7 7 3 8888 8 88888 0 8 5 55 2 2 2 555 2 2 0 2 555 0000000 00 6 00 8 6 0 1 66 4 999 4 33 000 7777777 555555 5 555555555555555555555555555555 1 5 7 1111 3 3 66 0 888 11111111 2 666666 66 6 00 4 33333333 3333333333 999 888 0 6666 0 99 4 7 7 4 000 00 1111111111 7 4 3 7 7 7 3 7 0 4 7 7 000 4 7 000 333 99 9 666666666666666666 1111 7 9 99999999999 4 000 6 7 7 0 0
consensus : ATGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATT--ACA------AANATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTAAAATTTAGATCTTACAGAC---TCATATAATAG-CTCA---AACT--T---CAAACTTT--GAAC-GCAAAAATACAATAAAGTAGAAAC-CTTGCAATC--AAAATAA-TAA-CGTAAATGA-AGAC-TTTCACTGGTAATAA---AAC------ACAT------AATTAAATA----T-A---T-----TT------------ACATACCNTAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--ACTT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AAA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATGAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-AATT--AA----AT--------TTTAAGATT----AT-ATTTAGCGAAATGATGAAAGAAAA---ATAATA-AAACGAATATT-AGGTTCTCATAATATCATATA
Reference ( family-2613 ) : ATGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATT--ACA------AANATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTAAAATTTAGATCTTACAGAC---TCATATAATAG-CTCA---AACT--T---CAAACTTT--GAAC-GCAAAAATACAATAAAGTAGAAAC-CTTGCAATC--AAAATAA-TAA-CGTAAATGA-AGAC-TTTCACTGGTAATAA---AAC------ACAT------AATTAAATA----T-A---T-----TT------------ACATACCNTAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--ACTT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AAA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATGAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-AATT--AA----AT--------TTTAAGATT----AT-ATTTAGCGAAATGATGAAAGAAAA---ATAATA-AAACGAATATT-AGGTTCTCATAATATCATATA
gi|11 : GCAACTG--AGAAGA----AAGG--------------TGG---GTGTTG-GTT---T-TTC-A-GCTTA-TT--TAATATACAAT-----GAAG-------------------GACAAAATA-C-AAA-GTAAAAACATAG-AAT-AATAT------------------AAAATTACAAGTTA---------ACCCATACTAAACGTTTCAT----ATTTT-TATTTTA------AAAA-GATATA
gi|12 : A----AAGC--------------CAG---ATGCTGAGTT---T-TTCCA-GTTTAATT--TCATATATAA------GAAG-TATTTACCGACAATAGCTGACAAAATA-TAAAA-G-AAACATATTGAAAT-TTTATT--ACA------AACATGA-----ACAGTTTTAGTA-AATAACCCACAGTAAA
gi|13 : TTGCAATC--AAAATAA-TA--TGTAAATGA-AGAC-ATCTACTGGTAATAA---AATGCATGTACAT------AATTAAATA----C-A---T-----TTTGTATATAAGTTACCTACCTTAAGG-TGTAGAT----TAT-ATA--GACCAGAT---TCAAT--TACTTC-ATC---C-AAA
gi|14 : TTGCAATC--AAAATAA-TA--TGTAAATGA-AGAC-CTCTACTGGTAATAA---AAT------ACATGTACGTAATTAAATA----C-A---T-----TTTGTATATAAGTTACATACCTTAAGG-TGTAGAT----GAT-ATA--GACCAGAT---TCAAT--TACCTC-AT
gi|15 : TGTAACCG--AGCAGC----AAGGAAAAAGAATGAAATCAGCTGATGTTG--TTCTAT-TTC-ATATTTAATAATTCA-----AA------GAAGGCATTGACCTA-AA-AAGAAACAAATTA-C-AAA-
gi|17 : cgcacacgtcaccgtgtatgAA-TAA-CGTAAATGA-ACAC-TTTTACTGGTAATAA---AAC------GCAT------AATTTGATA----T-A---TAGAAATT------------ACATACCGCAATACCGCATAT----GAA-ATA--GA-CAG-T---TC-TT--T--CTCGAT------AAGCCGGT-ATT--Att
gi|18 : A-TAA-CGTAAATGA-ACAC-TTTTACTGGTAATAA---AAC------GCAT------AATTTGATA----T-A---TAGAAATT------------AC-TACCGCAATACCGCATAT----GAA-ATA--GA-CAG-T---TC-TT--T--CTCGAT------AAGCCGGT-ATT--AC
gi|19 : TGAATT---T-CTC-G-GTTTAATT--TCATGTACAATTTAAGAAAA-CATTGACCTACAATAACGGACAA-----------------ATATAGAAAT-GATATT--ACA------AACATGAAAATGACAATTTTAGTACAGT
gi|2 : tgTGTAACCG--AGCAGC----AAGGAAAAAGAATGAAATCAGCTGATGTTG--TTCTAT-TTC-ATATTTAATAATTCA-----AA------GAAGGCATTGGCCTAAAAGAA--AACAAATTA-C-AAA-T------TAGAGAAAAAGACATTTTACACTTCGGATTACAAAAAT--CG--TTGA-CA-AGTTACCAAAAATA-------CAG--------CACACTTTGTAATGGAAAAAGA-----ATACGTTCGATAAA--ATTAACCTTT-GAACTCACGAACAATTC-TAAAATTA-CTTA---AAC---------AACTTT--AACT-GCAAAAATACAATAAAGTATAAAC-TTTGCAATTA-AAAATAAGTAT-CACATACAA-AAGC----CATT-GTAGTAAAGTAAG------ACCT------AAGTAAATA----T-AATTC-----TT------------ACATACCACAAGA-TGTAGCT----GAC-ATA--AGTTGGAT---CT-AT-----CT---TCCGAG-AAAT--GT-A-T--ACTGCTCTGAT-TT--A-----AC--A----A--AGAAATCGCGGTA--ACTT-T----AAACTAA-ATG--TGTAAA-CTTTATTATTGGTGA---AAGAAAA-T-AG----GAATAT-G-CCAAT-GAAATGAAAGAACCAATG-AAATGACAGAATAAGACTTTTACT-C-AGGAAAACTC---AATCC-GAATGCG---CAATAGAATTTTTTGTTCAATT--CA----AA--------TATAAAATT----TT-A-TTAATGAAACGATATGAGAAAA---CAAATA-AAACGAATgt
gi|20 : tcgcacacgtcaccgtgtatgACTG-TAGTAA---AG-------ACAT------GAATAAATA----TGA---T-----C--------------CATACCTCAAGA-TGCAtaaaatacatatagaaaattgacattcatactatcacata
gi|21 : aactgcaaagtacaatataaaatgtaattttgttttatgagcaagtgtcacatacaaatatgtTGTAACCGTAAGGAGATCGAAAGG--------------CAG---AGGTTGAGTT---T-CTC-A-GTTTATTT--TCATATACAA------GAGG-TATTGACCTACAATAATAGACAAAATA-T-A
gi|23 : AACCGG-AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTg
gi|24 : gaTGTAACTG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---
gi|25 : gtaacC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----T--AAA---
gi|3 : ATGTAACCG--AGAAGA----AAGG--------------CAG---ATGTTAAGTT---T-CTC-A-GTTTATTA--TCATATACAA------GAAG-CATTGATCTACAATAACAGAAAAAATA-T-AAATG-AAACATATAGAAAT-GATATT--ACA------AAGATGAAAATGACAATTTAAGTA-AGTTACCTACAGGAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACAATGTACATGTATTCTGTAAATAATTAAAATTTAGATTTTACAGAC---TCATATAATAG-TTCA---AACT--TTATCAAACTTT--GAAC-CCAAAAATAGAA--AAGTAGAAAA-CCTGCAATC--AAACTAA-TGA-TGTAAATGA-AGAC-TTTCACTGGCAATAA---AAC------ACAT------AATTAAATA------A---T-----TC------------AT-TACCTTGAGA-TGCAGAT----GAT-ACA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--GATT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AA--T-AC----AAA-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-AGGTGCA---CATTAGAACTGACGGTT-ATTT--AA----AT--------TTTAAGATT----AT-ATTTAGCAAAATGATGAAAGAAAA---ATGATA-AAACGAATATT-AGGTTCTCATAACATCATATA
gi|4 : ATGTAACCG--AGAAGA----AAGG--------------CAG---ATGT-AAGTT---TTCTC-A-GTTTATTA--TC-TATACAA------GAAG-CATTGATCTACAATAACAGA-AAAATAAT-AAA-G-AAACATA--GAAAT-GATAT-----A------AAGATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTAAA--TATTCTGT-AATAATTAAAATTTAGATTTTACAGAC---TCATATAA-AG-TTCA---AACTTAT---CAAACTTT--GAAC--CAAAAAT---AGAAAGTAGAAAC-C-TGCAATC--AAACTAA-TGA-TGTAAATGA-AGAC-TTTCACTGGCAATAA---AAC------ACAT------AATTAAATA----T-A---GAA---GT------------ACATACCTTGAGA-TGCAGAT----GATAACA--GACCAGAT---TCAAT--TAACTC-ATC---GCAAAC--GT-ATT--ACTGCTCTGAT-TT--A-----ACTAT----A--AAA---CGCGGTA--GATT-T----ATATTAA-AAG--TG-AAA-CTCTA-TACTGGATA---AAG--AA-T-AC-----AA-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-A-GTGCA---CATTAGAACTGACGGTT-ATTT--AA----AT--------TTTAAGATT----AT-ATTTAGC-AAATGATGAAAGAAAA---ATAATG-AAACG-ATATT-GGGTTCTCATAATATCATATAt
gi|5 : TGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTATT-----ATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAATG-AAACATGTATAAAT-GATATT--ACA------AATATGAAAATTACAATTTAAGTA-AGTTACGTACAGCAAACGTTTCAGAAGAATCTTATATTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTTAAATTTAGATCTTACAGAC---TCATATAATAGACTAAGCTAAGT--T---CAAACTTT--GACT-GCAAAAATACAATACAGTAGAAACACTTGC-ATC---AAATAA-T-A-TGTAAATGA-AGACTTTTCACTGGT-ATTA---AAC------ACAT------AG-----------------------TT------------ACATACC-TAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TCAATAGTAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TTA-A-----AC--TATAAA--AAA---CGCGGTA--ACAT-T----ATATTAA-AAG--TT-AAA-CT---TTACTGGATA---AAG-GAA-TCAC----AAA-ATGGACCAAT-GAAATCGAA-AACCAATGAAAATAACAGAATGAAAC-TTAACTCC-A-GCAAACTC---AATCCAAGGTGCG---CAT-----------GT---------A----AT--------CTGACGGTT----AT-ATTTAGC-------------AAAA---ATAATA-AAACGAACACT-GGGTTCTCATAATATCACAT
gi|6 : ---CAAATTTTCAAAACAGCAAAATTGCAATAAAGTACAAAC-TTTGCAATTTAAAAAAAA-TAAGTGTCAATCACAAAC-ATTAAGCAGCAAAAT---AAG------ACAT------AAATAAACATGACT-A---T-----TA------------TCAT-CCATTAGA-TGCAATC----GAT-ACA--AGCTGTATAAATC-TT--TACCAC-A-----A-AAAT--GT-G-C--ACTGCTCTGAC-TTGCA-----AT--T----T--AAA-----CGGTA--ACTTGC----AT-CTAA-AAG--T
gi|7 : tgtaacaagcagcaagaatagaaaatttcgtcttgatgttgtttgtttcgatgcaaatggatatgttggtaagatattaaggtatcaacctataagcaaaagagatatgattaaattagacaaagtgcaaatttgcattttcctttccttgggcaatatgttaccaattatacatttgtaaccaaagaaaatatgtctcatcaaatatcgacttacaaaaAAATA----TGA---TC----TT------------ACATACCACAAAA--GAATATCTAGGAT-ACAAGGATCTGAT---C---T--TAACCC-GAA---G-AAAT--GTTATCTGACTTCTGAGATGTT--AGAGTCAC--A----G--AAATT-CGCGGTATAACTT-TTTTAACACTAA-ATGCCTGTAAATCTTTAT-ATTGGTGA---AAG-AAAGT-AG----GAA-ATAGGCCAATTGAAAT--GAGAACCAATG-AAATGACAGAATAAAAC-TTTACTCC-A-GGAAACTC----ATCCGAAATGCGCCACACTAGATGTTTTGGTC-AATTCCAATAACATAACACATGTTT--GATTTTTAATGAATAAGCGAACTAATG-TAGAAAACAGATCACATAAACGAATA
gi|8 : agacctaagttaTAAGA-TGCAGAT----GAT-AAA--AACCAGAT---TC-A-----ACTC-ATC---A-AAAC--GT-AT---ACTGCTCTGAT-TT--C-----AC--T----ATAAGA---CGTGGTA--ACTT-T----ATATTTA-AAG--TG-AAA-CTCTATTATTGGATATTAAAG-GAA-A-AT----GAA-AT-GGCTAAT-GAAATCAAAGAACCGATG-AAATAACAGAATAAAAC-TTAACT-CGA-CCAAACTC---AATCC-AGATGCG---CATTAAAACTTCCGGTT-AATT--GA----AC--------TTTAAGATT----AT-ACTTAAC--------------AAA---ATAATA-AATTGAATATC-AGTTTCTCATAATATCAgagatacgaatatacgaaaatagacattcatactacacata
gi|9 : agcattaaccctatGAT----GAG-AAA--GAC-AGAT---TC-AA--TTACTC-ATC---G-AAACA-GT-ATT--A-TGCACTGAC-TT--A-----ATA-T----A--AAA---TGCG-TA----TT-T----ATATTAAGAAG--CG-AAA-CTCTATTATTGG-TA---AGG-AAA-T-TCAATGGAA-AT-GAACAAT-GAAATCGAAAAACCAATG--AAT--CAGACTAAA-----TGCT-C-A-GCAAACTCGAAAAT-C-AGGTGCG----ATTAGAACTA--GGTT-AATT---A----AT--------TTCAATATT----CT-ATTTAGCAAAATGATGAAAG-CAA---AT-ATA-AA---AGTATTCAGGTTTCAATAATATCA-ATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): CAGCGGCCATGATGTTAACCGAGCAGCAAGGAAAATGAATGAAGATAGCTGATGATTTCTATTTCAGTTTTAATGATGTCAAAGAATTAAGGCATTGACCTAAGGAAAAACAAATTACAAATTAAGAGAAAAAAGTTACAAATTTACCAAATCGTTGAAAAAGTTACCAATAATACAGCAACAACATTGTAATGGAAAAAGAATAACGTTAGATAAGAAATTAACCTTTGAAACTCAACGAACAATTCTAATAATTACTCAACAACTTTAACTGCAATATACAATAAAGTTAATAAACTTTTGCAATAAAAAATAAGTATCACATACAAAAAGCATTGTAAGTAAGAAGTAAGACCTAAGTATATATGATTCTTACATCCACAAGATGTTGGACTGATCTTCCCACGAAAATGTATTGCTCTTGGCTACTCCCGTCATTTAACTACAGCAAATCGAGAGTGAACTTCGGTTAAAGCTAAATGTGTAAACTTTTATTCTTTATATTATCTGGTGAGATCAGAAAAATAGGGCGATATACGGCCTAATGAGAGAGTTGAAAAGAATGCAATGAATGGACACGAATAAAACGCTCTTTACATCCTCTAGGAAAACCTCACAAATCCGATAATGAGCGCCACAAGTAAGAATGGGTTTGGTCCAATACAAATAATCTTATTTGAATGAACGAAATTATGATGAAACAGATAGAGAGACGAATAAAGAATACATATAAGAAAATATGACATTCATTTGATCTTTACTATTTTCACATA
Unaligned ( gi|10 ): ACGCCATGTTTGTAATCGAACAGCAAGGAATAAGAATTCGGCTTTGATGAAAATGGATAAGTCGGAATTTACCTATAAGCAAAACAAATTACGAATGAATCAAACAAAAATTACAATCTTACATTTCATAAACTGTTGACAATAAGTTACTAATGATAGAGTATACATTTGTAAGGAAAAGAAATTGACCTTTGAACTTGCAAATTCAGACAATATACTCTAACAATTTAACTGGAAAAATATAATAAAGTAAAAACGTTGCAATTAAAAGGAAT
Unaligned ( gi|16 ): AAGCAACCAAGCAGCAAGGAATAAGAAGAATTTCAGCTTTATGTTGTTTATTTCGAGGAAAATGGATATGTTGATAACTGGCATTAAATTTACTTATATTAGGAAAACAAATCAG
Unaligned ( gi|22 ): TAAAAATAATAAATACATATAGAAAATTGAGATTCATACTATCACATA
Alignments
lowQualScore : 11 44444444444444 111 111 111 111111 1111 111111111111 1111 11111 111 1 111 2222222 11 11 11 1111111 111111 666666666666666666666666666666 22222222 111111 11 11111111 2222222222 111 1111 1 111 1111111111 1 1 111 1 111 111 222222222222222222 1111 11111111111 111
lowQualScore : 00 1 8888 77777777777777 444 4 222 4 4 8 5 777 1 777777 8 1 1 33 777 4444 0 1 5 888888888888 3 7 0 0 0 5 0 1111 0 77777 5 0 2 33 3 3 3 777 3 3 0 0 777 8888888 11 0 33 3 5 8 0 33 4 999 4 88 777 4444444 111111 3 999999999999999999999999999999 2 4 6 7777 3 0 44 1 555 00000000 6 000000 33 3 55 4 55555555 1111111111 333 777 5 0000 5 66 1 5 1 5 000 88 4444444444 5 1 2 5 0 5 2 5 1 1 5 5 000 1 1 000 333 55 1 666666666666666666 2222 5 3 99999999999 1 000 3 5 1 8 7
lowQualScore : .. . .... .............. ... . ... . . . . ... . ...... . . . .. ... .... . . . ............ . . . . . . . .... . ..... . . . .. . . . ... . . . . ... ....... .. . .. . . . . .. . ... . .. ... ....... ...... . .............................. . . . .... . . .. . ... ........ . ...... .. . .. . ........ .......... ... ... . .... . .. . . . . ... .. .......... . . . . . . . . . . . . ... . . ... ... .. . .................. .... . . ........... . ... . . . . .
lowQualScore : 66 1 5555 00000000000000 000 4 777 0 0 0 3 666 9 222222 9 1 8 88 666 3333 7 4 7 777777777777 0 9 1 6 7 7 3 8888 8 88888 0 8 5 55 2 2 2 555 2 2 0 2 555 0000000 00 6 00 8 6 0 1 66 4 999 4 33 000 7777777 555555 5 555555555555555555555555555555 1 5 7 1111 3 3 66 0 888 11111111 2 666666 66 6 00 4 33333333 3333333333 999 888 0 6666 0 99 4 7 7 4 000 00 1111111111 7 4 3 7 7 7 3 7 0 4 7 7 000 4 7 000 333 99 9 666666666666666666 1111 7 9 99999999999 4 000 6 7 7 0 0
consensus : ATGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATT--ACA------AANATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTAAAATTTAGATCTTACAGAC---TCATATAATAG-CTCA---AACT--T---CAAACTTT--GAAC-GCAAAAATACAATAAAGTAGAAAC-CTTGCAATC--AAAATAA-TAA-CGTAAATGA-AGAC-TTTCACTGGTAATAA---AAC------ACAT------AATTAAATA----T-A---T-----TT------------ACATACCNTAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--ACTT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AAA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATGAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-AATT--AA----AT--------TTTAAGATT----AT-ATTTAGCGAAATGATGAAAGAAAA---ATAATA-AAACGAATATT-AGGTTCTCATAATATCATATA
Reference ( family-2613 ) : ATGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATT--ACA------AANATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTAAAATTTAGATCTTACAGAC---TCATATAATAG-CTCA---AACT--T---CAAACTTT--GAAC-GCAAAAATACAATAAAGTAGAAAC-CTTGCAATC--AAAATAA-TAA-CGTAAATGA-AGAC-TTTCACTGGTAATAA---AAC------ACAT------AATTAAATA----T-A---T-----TT------------ACATACCNTAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--ACTT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AAA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATGAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-AATT--AA----AT--------TTTAAGATT----AT-ATTTAGCGAAATGATGAAAGAAAA---ATAATA-AAACGAATATT-AGGTTCTCATAATATCATATA
gi|11 : GCAACTG--AGAAGA----AAGG--------------TGG---GTGTTG-GTT---T-TTC-A-GCTTA-TT--TAATATACAAT-----GAAG-------------------GACAAAATA-C-AAA-GTAAAAACATAG-AAT-AATAT------------------AAAATTACAAGTTA---------ACCCATACTAAACGTTTCAT----ATTTT-TATTTTA------AAAA-GATATA
gi|12 : A----AAGC--------------CAG---ATGCTGAGTT---T-TTCCA-GTTTAATT--TCATATATAA------GAAG-TATTTACCGACAATAGCTGACAAAATA-TAAAA-G-AAACATATTGAAAT-TTTATT--ACA------AACATGA-----ACAGTTTTAGTA-AATAACCCACAGTAAA
gi|13 : TTGCAATC--AAAATAA-TA--TGTAAATGA-AGAC-ATCTACTGGTAATAA---AATGCATGTACAT------AATTAAATA----C-A---T-----TTTGTATATAAGTTACCTACCTTAAGG-TGTAGAT----TAT-ATA--GACCAGAT---TCAAT--TACTTC-ATC---C-AAA
gi|14 : TTGCAATC--AAAATAA-TA--TGTAAATGA-AGAC-CTCTACTGGTAATAA---AAT------ACATGTACGTAATTAAATA----C-A---T-----TTTGTATATAAGTTACATACCTTAAGG-TGTAGAT----GAT-ATA--GACCAGAT---TCAAT--TACCTC-AT
gi|15 : TGTAACCG--AGCAGC----AAGGAAAAAGAATGAAATCAGCTGATGTTG--TTCTAT-TTC-ATATTTAATAATTCA-----AA------GAAGGCATTGACCTA-AA-AAGAAACAAATTA-C-AAA-
gi|17 : cgcacacgtcaccgtgtatgAA-TAA-CGTAAATGA-ACAC-TTTTACTGGTAATAA---AAC------GCAT------AATTTGATA----T-A---TAGAAATT------------ACATACCGCAATACCGCATAT----GAA-ATA--GA-CAG-T---TC-TT--T--CTCGAT------AAGCCGGT-ATT--Att
gi|18 : A-TAA-CGTAAATGA-ACAC-TTTTACTGGTAATAA---AAC------GCAT------AATTTGATA----T-A---TAGAAATT------------AC-TACCGCAATACCGCATAT----GAA-ATA--GA-CAG-T---TC-TT--T--CTCGAT------AAGCCGGT-ATT--AC
gi|19 : TGAATT---T-CTC-G-GTTTAATT--TCATGTACAATTTAAGAAAA-CATTGACCTACAATAACGGACAA-----------------ATATAGAAAT-GATATT--ACA------AACATGAAAATGACAATTTTAGTACAGT
gi|2 : tgTGTAACCG--AGCAGC----AAGGAAAAAGAATGAAATCAGCTGATGTTG--TTCTAT-TTC-ATATTTAATAATTCA-----AA------GAAGGCATTGGCCTAAAAGAA--AACAAATTA-C-AAA-T------TAGAGAAAAAGACATTTTACACTTCGGATTACAAAAAT--CG--TTGA-CA-AGTTACCAAAAATA-------CAG--------CACACTTTGTAATGGAAAAAGA-----ATACGTTCGATAAA--ATTAACCTTT-GAACTCACGAACAATTC-TAAAATTA-CTTA---AAC---------AACTTT--AACT-GCAAAAATACAATAAAGTATAAAC-TTTGCAATTA-AAAATAAGTAT-CACATACAA-AAGC----CATT-GTAGTAAAGTAAG------ACCT------AAGTAAATA----T-AATTC-----TT------------ACATACCACAAGA-TGTAGCT----GAC-ATA--AGTTGGAT---CT-AT-----CT---TCCGAG-AAAT--GT-A-T--ACTGCTCTGAT-TT--A-----AC--A----A--AGAAATCGCGGTA--ACTT-T----AAACTAA-ATG--TGTAAA-CTTTATTATTGGTGA---AAGAAAA-T-AG----GAATAT-G-CCAAT-GAAATGAAAGAACCAATG-AAATGACAGAATAAGACTTTTACT-C-AGGAAAACTC---AATCC-GAATGCG---CAATAGAATTTTTTGTTCAATT--CA----AA--------TATAAAATT----TT-A-TTAATGAAACGATATGAGAAAA---CAAATA-AAACGAATgt
gi|20 : tcgcacacgtcaccgtgtatgACTG-TAGTAA---AG-------ACAT------GAATAAATA----TGA---T-----C--------------CATACCTCAAGA-TGCAtaaaatacatatagaaaattgacattcatactatcacata
gi|21 : aactgcaaagtacaatataaaatgtaattttgttttatgagcaagtgtcacatacaaatatgtTGTAACCGTAAGGAGATCGAAAGG--------------CAG---AGGTTGAGTT---T-CTC-A-GTTTATTT--TCATATACAA------GAGG-TATTGACCTACAATAATAGACAAAATA-T-A
gi|23 : AACCGG-AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTg
gi|24 : gaTGTAACTG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---
gi|25 : gtaacC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----T--AAA---
gi|3 : ATGTAACCG--AGAAGA----AAGG--------------CAG---ATGTTAAGTT---T-CTC-A-GTTTATTA--TCATATACAA------GAAG-CATTGATCTACAATAACAGAAAAAATA-T-AAATG-AAACATATAGAAAT-GATATT--ACA------AAGATGAAAATGACAATTTAAGTA-AGTTACCTACAGGAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACAATGTACATGTATTCTGTAAATAATTAAAATTTAGATTTTACAGAC---TCATATAATAG-TTCA---AACT--TTATCAAACTTT--GAAC-CCAAAAATAGAA--AAGTAGAAAA-CCTGCAATC--AAACTAA-TGA-TGTAAATGA-AGAC-TTTCACTGGCAATAA---AAC------ACAT------AATTAAATA------A---T-----TC------------AT-TACCTTGAGA-TGCAGAT----GAT-ACA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--GATT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AA--T-AC----AAA-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-AGGTGCA---CATTAGAACTGACGGTT-ATTT--AA----AT--------TTTAAGATT----AT-ATTTAGCAAAATGATGAAAGAAAA---ATGATA-AAACGAATATT-AGGTTCTCATAACATCATATA
gi|4 : ATGTAACCG--AGAAGA----AAGG--------------CAG---ATGT-AAGTT---TTCTC-A-GTTTATTA--TC-TATACAA------GAAG-CATTGATCTACAATAACAGA-AAAATAAT-AAA-G-AAACATA--GAAAT-GATAT-----A------AAGATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTAAA--TATTCTGT-AATAATTAAAATTTAGATTTTACAGAC---TCATATAA-AG-TTCA---AACTTAT---CAAACTTT--GAAC--CAAAAAT---AGAAAGTAGAAAC-C-TGCAATC--AAACTAA-TGA-TGTAAATGA-AGAC-TTTCACTGGCAATAA---AAC------ACAT------AATTAAATA----T-A---GAA---GT------------ACATACCTTGAGA-TGCAGAT----GATAACA--GACCAGAT---TCAAT--TAACTC-ATC---GCAAAC--GT-ATT--ACTGCTCTGAT-TT--A-----ACTAT----A--AAA---CGCGGTA--GATT-T----ATATTAA-AAG--TG-AAA-CTCTA-TACTGGATA---AAG--AA-T-AC-----AA-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-A-GTGCA---CATTAGAACTGACGGTT-ATTT--AA----AT--------TTTAAGATT----AT-ATTTAGC-AAATGATGAAAGAAAA---ATAATG-AAACG-ATATT-GGGTTCTCATAATATCATATAt
gi|5 : TGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTATT-----ATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAATG-AAACATGTATAAAT-GATATT--ACA------AATATGAAAATTACAATTTAAGTA-AGTTACGTACAGCAAACGTTTCAGAAGAATCTTATATTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTTAAATTTAGATCTTACAGAC---TCATATAATAGACTAAGCTAAGT--T---CAAACTTT--GACT-GCAAAAATACAATACAGTAGAAACACTTGC-ATC---AAATAA-T-A-TGTAAATGA-AGACTTTTCACTGGT-ATTA---AAC------ACAT------AG-----------------------TT------------ACATACC-TAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TCAATAGTAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TTA-A-----AC--TATAAA--AAA---CGCGGTA--ACAT-T----ATATTAA-AAG--TT-AAA-CT---TTACTGGATA---AAG-GAA-TCAC----AAA-ATGGACCAAT-GAAATCGAA-AACCAATGAAAATAACAGAATGAAAC-TTAACTCC-A-GCAAACTC---AATCCAAGGTGCG---CAT-----------GT---------A----AT--------CTGACGGTT----AT-ATTTAGC-------------AAAA---ATAATA-AAACGAACACT-GGGTTCTCATAATATCACAT
gi|6 : ---CAAATTTTCAAAACAGCAAAATTGCAATAAAGTACAAAC-TTTGCAATTTAAAAAAAA-TAAGTGTCAATCACAAAC-ATTAAGCAGCAAAAT---AAG------ACAT------AAATAAACATGACT-A---T-----TA------------TCAT-CCATTAGA-TGCAATC----GAT-ACA--AGCTGTATAAATC-TT--TACCAC-A-----A-AAAT--GT-G-C--ACTGCTCTGAC-TTGCA-----AT--T----T--AAA-----CGGTA--ACTTGC----AT-CTAA-AAG--T
gi|7 : tgtaacaagcagcaagaatagaaaatttcgtcttgatgttgtttgtttcgatgcaaatggatatgttggtaagatattaaggtatcaacctataagcaaaagagatatgattaaattagacaaagtgcaaatttgcattttcctttccttgggcaatatgttaccaattatacatttgtaaccaaagaaaatatgtctcatcaaatatcgacttacaaaaAAATA----TGA---TC----TT------------ACATACCACAAAA--GAATATCTAGGAT-ACAAGGATCTGAT---C---T--TAACCC-GAA---G-AAAT--GTTATCTGACTTCTGAGATGTT--AGAGTCAC--A----G--AAATT-CGCGGTATAACTT-TTTTAACACTAA-ATGCCTGTAAATCTTTAT-ATTGGTGA---AAG-AAAGT-AG----GAA-ATAGGCCAATTGAAAT--GAGAACCAATG-AAATGACAGAATAAAAC-TTTACTCC-A-GGAAACTC----ATCCGAAATGCGCCACACTAGATGTTTTGGTC-AATTCCAATAACATAACACATGTTT--GATTTTTAATGAATAAGCGAACTAATG-TAGAAAACAGATCACATAAACGAATA
gi|8 : agacctaagttaTAAGA-TGCAGAT----GAT-AAA--AACCAGAT---TC-A-----ACTC-ATC---A-AAAC--GT-AT---ACTGCTCTGAT-TT--C-----AC--T----ATAAGA---CGTGGTA--ACTT-T----ATATTTA-AAG--TG-AAA-CTCTATTATTGGATATTAAAG-GAA-A-AT----GAA-AT-GGCTAAT-GAAATCAAAGAACCGATG-AAATAACAGAATAAAAC-TTAACT-CGA-CCAAACTC---AATCC-AGATGCG---CATTAAAACTTCCGGTT-AATT--GA----AC--------TTTAAGATT----AT-ACTTAAC--------------AAA---ATAATA-AATTGAATATC-AGTTTCTCATAATATCAgagatacgaatatacgaaaatagacattcatactacacata
gi|9 : agcattaaccctatGAT----GAG-AAA--GAC-AGAT---TC-AA--TTACTC-ATC---G-AAACA-GT-ATT--A-TGCACTGAC-TT--A-----ATA-T----A--AAA---TGCG-TA----TT-T----ATATTAAGAAG--CG-AAA-CTCTATTATTGG-TA---AGG-AAA-T-TCAATGGAA-AT-GAACAAT-GAAATCGAAAAACCAATG--AAT--CAGACTAAA-----TGCT-C-A-GCAAACTCGAAAAT-C-AGGTGCG----ATTAGAACTA--GGTT-AATT---A----AT--------TTCAATATT----CT-ATTTAGCAAAATGATGAAAG-CAA---AT-ATA-AA---AGTATTCAGGTTTCAATAATATCA-ATA
blockSeqs : TA C TCGA AAAAAGAATGAAAT CTG A CTA T C T A AAT T TTTAAG G C T CT TA TGA T A TTTACACTTCGG C G C AAGA TAATG A C TG A T A . A T A GCT TTTAT CA AG A G A TA G AGT C TT AGT T GTACGT T CATTTTGTATATAAGTT A T C CTAG A AG C AAA AATAGTAA G CCGAG CG T TG G AGAGTC TATAAA TT TAA G TTTA G CC T T C A TTA A TTCAATGG . G A T A A . A C G . GAA A G CCA GAC T T CCAATAACATAACACATG TTTA G T AAAATGATGAA A CAG G T A C T
blockSeqs : G C . AAAAAGAATGAAAT CTG A CTA . . T A AAT T . G C T GA AT TGA T . TACA C G . AAGA T C A TG A T A . A T . . TTAT . C A T . A . AC . C . C . T TATAGAAATT A G C . . . T . AATTAC G CGC A . . . GCA TATA . G . . . . . . C A . G TCACA . A A . . A . A C . . . G G . GAC T T AAAT . . T AAAATGATGAA A . A . A . C
blockSeqs : . G . . . A . . . . A T T . . A G CG C GA G . TACA T G . AAGA T C C . . T A . A . . . TT . G G T . . . AC . T . C . T TATAGAAATT A G . . . . C . AATTAA . CG . . . . AA TATA . G . . . . . . T A . A GTAGG . . A . . A . A . . . . . A . TTT C A AAAT . . T AAATGATGAA A . A . A . .
blockSeqs : . C . . . A . . . . A T T . . C T TA C GA T . TACA G T . . T C . . . . . . . TC . T . G . G TGACTATTA A A . . . . C . ATTAA . CG . . . . A ATA . A . . . . . . C T . G TACA . . G . . G . T . . . . . G . TCC T A GAAC . . A GAACTAATGT A . C . A .
blockSeqs : . C . . . A . . . . T T T . . C T CA T T T . TACA G . . . . AT . T . C . A TAATTCTT A T . . . . C . TTTAC . CG . . . . A TT . A . . . . . . C A . A AATG . . G . . A . A . . . . . G . A T A AAT . . C . . . A . T
blockSeqs : . A . . . A . . . . T A T . . C T CA T . . . A T . . . . AT . T . C . T TAGAAGT A T . . . . C . AATTA . AG . . . . A TA . A . . . . . . . . . . TAC . . A . . . . T . . . . . . . . . . AAT . . T . . . . . .
blockSeqs : . A . . . A . . . . T A . . . C T CA T . AT . A . C . T TGATCTT A T . . . . T . TTAA . CA . . . . C TT . . . . . .
blockSeqs : . C . . . A . . . . T . . . . . . . . . T . . . G . A TGATC A A . . . . C . TTT . CG . . . . A AG .
blockSeqs : . . . . . . . . . . . . ATTC . A . . . . C . TTT . A . . .
blockSeqs : . . TT . . . . . . . . AT . . . . .
blockSeqs : . . . . . . AA . .
blockSeqs : .
blockSeqCons : ****** CA TACA******** AAGA T**** AC* C****** TAGAATT*********************** ATTAA*** ** *** A* T* AAATGATGAA*
originalCons : ATGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATT--ACA------AANATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTAAAATTTAGATCTTACAGAC---TCATATAATAG-CTCA---AACT--T---CAAACTTT--GAAC-GCAAAAATACAATAAAGTAGAAAC-CTTGCAATC--AAAATAA-TAA-CGTAAATGA-AGAC-TTTCACTGGTAATAA---AAC------ACAT------AATTAAATA----T-A---T-----TT------------ACATACCNTAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--ACTT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AAA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATGAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-AATT--AA----AT--------TTTAAGATT----AT-ATTTAGCGAAATGATGAAAGAAAA---ATAATA-AAACGAATATT-AGGTTCTCATAATATCATATA
finalCons : ATGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATTACA--------AANATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTAAAATTTAGATCTTACAGAC---TCATATAATAG-CTCA---AACT--T---CAAACTTT--GAAC-GCAAAAATACAATAAAGTAGAAAC-CTTGCAATC--AAAATAA-TAAC-GTAAATGA-AGAC-TTTCACTGGTAATAA---AAC------ACAT------AATTAAATATAGAATT-----------------------ACATACCNTAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TCATTAA---CTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--ACTT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAGA-AA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATGAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-AATT--AA----AT--------TTTAAGATT----AT-ATTTAGCAAATGATGAA-AGAAAA---ATAATA-AAACGAATATT-AGGTTCTCATAATATCATATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): CAGCGGCCATGATGTTAACCGAGCAGCAAGGAAAATGAATGAAGATAGCTGATGATTTCTATTTCAGTTTTAATGATGTCAAAGAATTAAGGCATTGACCTAAGGAAAAACAAATTACAAATTAAGAGAAAAAAGTTACAAATTTACCAAATCGTTGAAAAAGTTACCAATAATACAGCAACAACATTGTAATGGAAAAAGAATAACGTTAGATAAGAAATTAACCTTTGAAACTCAACGAACAATTCTAATAATTACTCAACAACTTTAACTGCAATATACAATAAAGTTAATAAACTTTTGCAATAAAAAATAAGTATCACATACAAAAAGCATTGTAAGTAAGAAGTAAGACCTAAGTATATATGATTCTTACATCCACAAGATGTTGGACTGATCTTCCCACGAAAATGTATTGCTCTTGGCTACTCCCGTCATTTAACTACAGCAAATCGAGAGTGAACTTCGGTTAAAGCTAAATGTGTAAACTTTTATTCTTTATATTATCTGGTGAGATCAGAAAAATAGGGCGATATACGGCCTAATGAGAGAGTTGAAAAGAATGCAATGAATGGACACGAATAAAACGCTCTTTACATCCTCTAGGAAAACCTCACAAATCCGATAATGAGCGCCACAAGTAAGAATGGGTTTGGTCCAATACAAATAATCTTATTTGAATGAACGAAATTATGATGAAACAGATAGAGAGACGAATAAAGAATACATATAAGAAAATATGACATTCATTTGATCTTTACTATTTTCACATA
Unaligned ( gi|10 ): ACGCCATGTTTGTAATCGAACAGCAAGGAATAAGAATTCGGCTTTGATGAAAATGGATAAGTCGGAATTTACCTATAAGCAAAACAAATTACGAATGAATCAAACAAAAATTACAATCTTACATTTCATAAACTGTTGACAATAAGTTACTAATGATAGAGTATACATTTGTAAGGAAAAGAAATTGACCTTTGAACTTGCAAATTCAGACAATATACTCTAACAATTTAACTGGAAAAATATAATAAAGTAAAAACGTTGCAATTAAAAGGAAT
Unaligned ( gi|16 ): AAGCAACCAAGCAGCAAGGAATAAGAAGAATTTCAGCTTTATGTTGTTTATTTCGAGGAAAATGGATATGTTGATAACTGGCATTAAATTTACTTATATTAGGAAAACAAATCAG
Unaligned ( gi|22 ): TAAAAATAATAAATACATATAGAAAATTGAGATTCATACTATCACATA
Alignments
lowQualScore : 11 44444444444444 111 111 111 111111 1111 111111111111 1111 11111 111 1 111 3333 11 11 11 1111111 111111 11 55555555555555555555555 22222222 111111 11 11111111 2222222222 111 1111 1 111 11 1111111111 1 1 111 1 111 111 22222222222222
lowQualScore : 00 1 8888 77777777777777 444 4 222 4 4 8 5 777 1 777777 8 1 1 33 777 4444 0 1 5 888888888888 3 7 0 0 0 5 0 1111 0 77777 5 0 2 33 3 3 3 777 3 3 0 0 777 4444 11 0 33 3 11 8 0 33 4 999 4 88 777 3333333 000000 33 00 22222222222222222222222 3 3 4 6 7777 3 0 44 1 555 00000000 6 000000 33 3 55 4 55555555 1111111111 333 777 5 0000 5 66 1 5 1 5 000 55 4444444444 5 1 2 5 0 5 2 5 1 1 5 5 000 1 1 000 333 55 1 9 22222222222222 1 3 8 7
lowQualScore : .. . .... .............. ... . ... . . . . ... . ...... . . . .. ... .... . . . ............ . . . . . . . .... . ..... . . . .. . . . ... . . . . ... .... .. . .. . .. . . .. . ... . .. ... ....... ...... .. .. ....................... . . . . .... . . .. . ... ........ . ...... .. . .. . ........ .......... ... ... . .... . .. . . . . ... .. .......... . . . . . . . . . . . . ... . . ... ... .. . . .............. . . . .
lowQualScore : 66 1 5555 00000000000000 000 4 777 0 0 0 3 666 9 222222 9 1 8 88 666 3333 7 4 7 777777777777 0 9 1 6 7 7 3 8888 8 88888 0 8 5 55 2 2 2 555 2 2 0 2 555 5555 00 6 00 8 44 0 1 66 4 999 4 33 000 7777777 555555 77 00 33333333333333333333333 6 6 5 7 1111 3 3 66 0 888 11111111 2 666666 66 6 00 4 33333333 3333333333 999 888 0 6666 0 99 4 7 7 4 000 00 1111111111 7 4 3 7 7 7 3 7 0 4 7 7 000 4 7 000 333 99 9 7 88888888888888 7 5 0 0
consensus : ATGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATT--ACA------AANATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTAAAATTTAGATCTTACAGAC---TCATATAATAG-CTCA---AACTT--TCAAACTTT--GAAC-GCAAAAATACAATAAAGTAGAAAC-CTTGCAATC--AAAATAA-TAA-CGTAAATGA-AGAC-TTTCACTGGTAATAA---AAC------ACAT------AA-TT--AAATA---------TAG-A--A---T--TA-CA-TACCNTAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--ACTT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AAA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATGAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-AATTAAATTTTAAGATTATATTTAGC-AAATGATGAAAGAAAAATAATAAAACGAATATT-AGGTTCTCATAATATCATATA
Reference ( family-2613 ) : ATGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTANTN--TCATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAA-G-AAACATATAGAAAT-GATATT--ACA------AANATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTAAAATTTAGATCTTACAGAC---TCATATAATAG-CTCA---AACT---TCAAACTTT--GAAC-GCAAAAATACAATAAAGTAGAAAC-CTTGCAATC--AAAATAA-TAA-CGTAAATGA-AGAC-TTTCACTGGTAATAA---AAC------ACAT------AA-TT--AAATA---------TAG-A--A---T--TA-CA-TACCNTAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--ACTT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG-AAA-T-AC----GAA-AT-GACCAAT-GAAATCGAAGAACCAATG-AAATAACAGAATGAAAC-TTNACT-C-A-GCAAACTC---AATCC-AGGTGCG---CATTAGAACTNNCGGTT-AATTAAATTTTAAGATTATATTTAGC-AAATGATGAAAGAAAAATAATAAAACGAATATT-AGGTTCTCATAATATCATATA
gi|11 : GCAACTG--AGAAGA----AAGG--------------TGG---GTGTTG-GTT---T-TTC-A-GCTTA-TT--TAATATACAAT-----GAAG-------------------GACAAAATA-C-AAA-GTAAAAACATAG-AAT-AATAT------------------AAAATTACAAGTTA---------ACCCATACTAAACGTTTCAT----ATTTT-TATTTTA------AAAA-GATATA
gi|12 : A----AAGC--------------CAG---ATGCTGAGTT---T-TTCCA-GTTTAATT--TCATATATAA------GAAG-TATTTACCGACAATAGCTGACAAAATA-TAAAA-G-AAACATATTGAAAT-TTTATT--ACA------AACATGA-----ACAGTTTTAGTA-AATAACCCACAGTAAA
gi|13 : TTGCAATC--AAAATAA-TA--TGTAAATGA-AGAC-ATCTACTGGTAATAA---AATGCATGTACAT------AA-TT--AAATACATTTTGTATAT-A--AG--T--TA-CC-TACCTTAAGG-TGTAGAT----TAT-ATA--GACCAGAT---TCAAT--TACTTC-ATC---C-AAA
gi|14 : TTGCAATC--AAAATAA-TA--TGTAAATGA-AGAC-CTCTACTGGTAATAA---AAT------ACATGTACGTAA-TT--AAATACATTTTGTATAT-A--AG--T--TA-CA-TACCTTAAGG-TGTAGAT----GAT-ATA--GACCAGAT---TCAAT--TACCTC-AT
gi|15 : TGTAACCG--AGCAGC----AAGGAAAAAGAATGAAATCAGCTGATGTTG--TTCTAT-TTC-ATATTTAATAATTCA-----AA------GAAGGCATTGACCTA-AA-AAGAAACAAATTA-C-AAA-
gi|17 : cgcacacgtcaccgtgtatgAA-TAA-CGTAAATGA-ACAC-TTTTACTGGTAATAA---AAC------GCAT------AA-TTTGATATA---------TAGAA--A---T--TA-CA-TACCGCAATACCGCATAT----GAA-ATA--GA-CAG-T---TC-TT--T--CTCGAT------AAGCCGGT-ATT--Att
gi|18 : A-TAA-CGTAAATGA-ACAC-TTTTACTGGTAATAA---AAC------GCAT------AA-TTTGATATA---------TAGAA--A---T--TA-C--TACCGCAATACCGCATAT----GAA-ATA--GA-CAG-T---TC-TT--T--CTCGAT------AAGCCGGT-ATT--AC
gi|19 : TGAATT---T-CTC-G-GTTTAATT--TCATGTACAATTTAAGAAAA-CATTGACCTACAATAACGGACAA-----------------ATATAGAAAT-GATATT--ACA------AACATGAAAATGACAATTTTAGTACAGT
gi|2 : tgTGTAACCG--AGCAGC----AAGGAAAAAGAATGAAATCAGCTGATGTTG--TTCTAT-TTC-ATATTTAATAATTCA-----AA------GAAGGCATTGGCCTAAAAGAA--AACAAATTA-C-AAA-T------TAGAGAAAAAGACATTTTACACTTCGGATTACAAAAAT--CG--TTGA-CA-AGTTACCAAAAATA-------CAG--------CACACTTTGTAATGGAAAAAGA-----ATACGTTCGATAAA--ATTAACCTTT-GAACTCACGAACAATTC-TAAAATTA-CTTA---AAC-------AACTTT--AACT-GCAAAAATACAATAAAGTATAAAC-TTTGCAATTA-AAAATAAGTAT-CACATACAA-AAGC----CATT-GTAGTAAAGTAAG------ACCT------AA-GT--AAATA---------T---A--ATTCT--TA-CA-TACCACAAGA-TGTAGCT----GAC-ATA--AGTTGGAT---CT-AT-----CT---TCCGAG-AAAT--GT-A-T--ACTGCTCTGAT-TT--A-----AC--A----A--AGAAATCGCGGTA--ACTT-T----AAACTAA-ATG--TGTAAA-CTTTATTATTGGTGA---AAGAAAA-T-AG----GAATAT-G-CCAAT-GAAATGAAAGAACCAATG-AAATGACAGAATAAGACTTTTACT-C-AGGAAAACTC---AATCC-GAATGCG---CAATAGAATTTTTTGTTCAATTCAAATATAAAATTTTATTAATG-AAACGATATGAGAAAACAAATAAAACGAATgt
gi|20 : tcgcacacgtcaccgtgtatgACTG-TAGTAA---AG-------ACAT------GA-AT--AAATA---------T-G-A---------TC-CA-TACCTCAAGA-TGCAtaaaatacatatagaaaattgacattcatactatcacata
gi|21 : aactgcaaagtacaatataaaatgtaattttgttttatgagcaagtgtcacatacaaatatgtTGTAACCGTAAGGAGATCGAAAGG--------------CAG---AGGTTGAGTT---T-CTC-A-GTTTATTT--TCATATACAA------GAGG-TATTGACCTACAATAATAGACAAAATA-T-A
gi|23 : AACCGG-AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTg
gi|24 : gaTGTAACTG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---
gi|25 : gtaacC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----T--AAA---
gi|3 : ATGTAACCG--AGAAGA----AAGG--------------CAG---ATGTTAAGTT---T-CTC-A-GTTTATTA--TCATATACAA------GAAG-CATTGATCTACAATAACAGAAAAAATA-T-AAATG-AAACATATAGAAAT-GATATT--ACA------AAGATGAAAATGACAATTTAAGTA-AGTTACCTACAGGAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACAATGTACATGTATTCTGTAAATAATTAAAATTTAGATTTTACAGAC---TCATATAATAG-TTCA---AACTTTATCAAACTTT--GAAC-CCAAAAATAGA--AAAGTAGAAAA-CCTGCAATC--AAACTAA-TGA-TGTAAATGA-AGAC-TTTCACTGGCAATAA---AAC------ACAT------AA-TT--AAAT--------------A--A---T--T--CATTACCTTGAGA-TGCAGAT----GAT-ACA--GACCAGAT---TC-AT--TAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TT--A-----AC--T----A--AAA---CGCGGTA--GATT-T----ATATTAA-AAG--TG-AAA-CTCTATTACTGGATA---AAG--AA-T-AC----AAA-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-AGGTGCA---CATTAGAACTGACGGTT-ATTTAAATTTTAAGATTATATTTAGCAAAATGATGAAAGAAAAATGATAAAACGAATATT-AGGTTCTCATAACATCATATA
gi|4 : ATGTAACCG--AGAAGA----AAGG--------------CAG---ATGT-AAGTT---TTCTC-A-GTTTATTA--TC-TATACAA------GAAG-CATTGATCTACAATAACAGA-AAAATAAT-AAA-G-AAACATA--GAAAT-GATAT-----A------AAGATGAAAATGACAATTTAAGTA-AGTTACCTACAGTAAACGTTTCAGAAGAATCTTATACTTTAT----GAAAACGATGTAAA--TATTCTGT-AATAATTAAAATTTAGATTTTACAGAC---TCATATAA-AG-TTCA---AACTTA-TCAAACTTT--GAAC--CAAAAAT---AGAAAGTAGAAAC-C-TGCAATC--AAACTAA-TGA-TGTAAATGA-AGAC-TTTCACTGGCAATAA---AAC------ACAT------AA-TT--AAATA---------TAG-A--A---G--TA-CA-TACCTTGAGA-TGCAGAT----GATAACA--GACCAGAT---TCAAT--TAACTC-ATC---GCAAAC--GT-ATT--ACTGCTCTGAT-TT--A-----ACTAT----A--AAA---CGCGGTA--GATT-T----ATATTAA-AAG--TG-AAA-CTCTA-TACTGGATA---AAG--AA-T-AC-----AA-AT-GACCAAT-GAATTCGAAGAACCAATG-AAATAACAGAATGAAAC-TTAACT-C-A-GCAAACTC---AATCC-A-GTGCA---CATTAGAACTGACGGTT-ATTTAAATTTTAAGATTATATTTAGC-AAATGATGAAAGAAAAATAATGAAACG-ATATT-GGGTTCTCATAATATCATATAt
gi|5 : TGTAACCG--AGCAGA----AAGG--------------CAG---ATGTTGAGTT---T-CTC-A-GTTTATT-----ATATACAA------GAAG-CATTGACCTACAATAACAGACAAAATA-T-AAATG-AAACATGTATAAAT-GATATT--ACA------AATATGAAAATTACAATTTAAGTA-AGTTACGTACAGCAAACGTTTCAGAAGAATCTTATATTTTAT----GAAAACGATGTACATGTGTTCTGTAAATAATTTAAATTTAGATCTTACAGAC---TCATATAATAGACTAAGCTAAGT---TCAAACTTT--GACT-GCAAAAATACAATACAGTAGAAACACTTGC-ATC---AAATAA-T-A-TGTAAATGA-AGACTTTTCACTGGT-ATTA---AAC------ACAT-------------------------------A--G---T--TA-CA-TACC-TAAGA-TGCAGAT----GAT-ATA--GACCAGAT---TCAATAGTAACTC-ATC---G-AAAC--GT-ATT--ACTGCTCTGAT-TTA-A-----AC--TATAAA--AAA---CGCGGTA--ACAT-T----ATATTAA-AAG--TT-AAA-CT---TTACTGGATA---AAG-GAA-TCAC----AAA-ATGGACCAAT-GAAATCGAA-AACCAATGAAAATAACAGAATGAAAC-TTAACTCC-A-GCAAACTC---AATCCAAGGTGCG---CAT-----------GT-------AATCTGACGGTTATATTTAGC-------------AAAAATAATAAAACGAACACT-GGGTTCTCATAATATCACAT
gi|6 : CAAATTTTCAAAACAGCAAAATTGCAATAAAGTACAAAC-TTTGCAATTTAAAAAAAA-TAAGTGTCAATCACAAAC-ATTAAGCAGCAAAAT---AAG------ACAT------AA-AT--AAACA---------T-G-ACTA---T--TATCA-T-CCATTAGA-TGCAATC----GAT-ACA--AGCTGTATAAATC-TT--TACCAC-A-----A-AAAT--GT-G-C--ACTGCTCTGAC-TTGCA-----AT--T----T--AAA-----CGGTA--ACTTGC----AT-CTAA-AAG--T
gi|7 : tgtaacaagcagcaagaatagaaaatttcgtcttgatgttgtttgtttcgatgcaaatggatatgttggtaagatattaaggtatcaacctataagcaaaagagatatgattaaattagacaaagtgcaaatttgcattttcctttccttgggcaatatgttaccaattatacatttgtaaccaaagaaaatatgtctcatcaaatatcgacttacaaaa------ACCT------AAGTT--AAA-A---------TAT-G--A---TCTTA-CA-TACCACAAAA--GAATATCTAGGAT-ACAAGGATCTGAT---C---T--TAACCC-GAA---G-AAAT--GTTATCTGACTTCTGAGATGTT--AGAGTCAC--A----G--AAATT-CGCGGTATAACTT-TTTTAACACTAA-ATGCCTGTAAATCTTTAT-ATTGGTGA---AAG-AAAGT-AG----GAA-ATAGGCCAATTGAAAT--GAGAACCAATG-AAATGACAGAATAAAAC-TTTACTCC-A-GGAAACTC----ATCCGAAATGCGCCACACTAGATGTTTTGGTC-AATT
gi|8 : agTAAGA-TGCAGAT----GAT-AAA--AACCAGAT---TC-A-----ACTC-ATC---A-AAAC--GT-AT---ACTGCTCTGAT-TT--C-----AC--T----ATAAGA---CGTGGTA--ACTT-T----ATATTTA-AAG--TG-AAA-CTCTATTATTGGATATTAAAG-GAA-A-AT----GAA-AT-GGCTAAT-GAAATCAAAGAACCGATG-AAATAACAGAATAAAAC-TTAACT-CGA-CCAAACTC---AATCC-AGATGCG---CATTAAAACTTCCGGTT-AATTGAACTTTAAGATTATACTTAAC--------------AAAATAATAAATTGAATATC-AGTTTCTCATAATATCAccaataacataacacatgtttgatttttaatgaataagcgaactaatgtagaaaacagatcacataaacgaatagagatacgaatatacgaaaatagacattcatactacacata
gi|9 : agcattaaccctatGAT----GAG-AAA--GAC-AGAT---TC-AA--TTACTC-ATC---G-AAACA-GT-ATT--A-TGCACTGAC-TT--A-----ATA-T----A--AAA---TGCG-TA----TT-T----ATATTAAGAAG--CG-AAA-CTCTATTATTGG-TA---AGG-AAA-T-TCAATGGAA-AT-GAACAAT-GAAATCGAAAAACCAATG--AAT--CAGACTAAA-----TGCT-C-A-GCAAACTCGAAAAT-C-AGGTGCG----ATTAGAACTA--GGTT-AATT-AATTTCAATATTCTATTTAGCAAAATGATGAAAG-CAAAT-ATAAA---AGTATTCAGGTTTCAATAATATCA-ATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): CAGCGGCCATGATGTTAACCGAGCAGCAAGGAAAATGAATGAAGATAGCTGATGATTTCTATTTCAGTTTTAATGATGTCAAAGAATTAAGGCATTGACCTAAGGAAAAACAAATTACAAATTAAGAGAAAAAAGTTACAAATTTACCAAATCGTTGAAAAAGTTACCAATAATACAGCAACAACATTGTAATGGAAAAAGAATAACGTTAGATAAGAAATTAACCTTTGAAACTCAACGAACAATTCTAATAATTACTCAACAACTTTAACTGCAATATACAATAAAGTTAATAAACTTTTGCAATAAAAAATAAGTATCACATACAAAAAGCATTGTAAGTAAGAAGTAAGACCTAAGTATATATGATTCTTACATCCACAAGATGTTGGACTGATCTTCCCACGAAAATGTATTGCTCTTGGCTACTCCCGTCATTTAACTACAGCAAATCGAGAGTGAACTTCGGTTAAAGCTAAATGTGTAAACTTTTATTCTTTATATTATCTGGTGAGATCAGAAAAATAGGGCGATATACGGCCTAATGAGAGAGTTGAAAAGAATGCAATGAATGGACACGAATAAAACGCTCTTTACATCCTCTAGGAAAACCTCACAAATCCGATAATGAGCGCCACAAGTAAGAATGGGTTTGGTCCAATACAAATAATCTTATTTGAATGAACGAAATTATGATGAAACAGATAGAGAGACGAATAAAGAATACATATAAGAAAATATGACATTCATTTGATCTTTACTATTTTCACATA
Unaligned ( gi|10 ): ACGCCATGTTTGTAATCGAACAGCAAGGAATAAGAATTCGGCTTTGATGAAAATGGATAAGTCGGAATTTACCTATAAGCAAAACAAATTACGAATGAATCAAACAAAAATTACAATCTTACATTTCATAAACTGTTGACAATAAGTTACTAATGATAGAGTATACATTTGTAAGGAAAAGAAATTGACCTTTGAACTTGCAAATTCAGACAATATACTCTAACAATTTAACTGGAAAAATATAATAAAGTAAAAACGTTGCAATTAAAAGGAAT
Unaligned ( gi|16 ): AAGCAACCAAGCAGCAAGGAATAAGAAGAATTTCAGCTTTATGTTGTTTATTTCGAGGAAAATGGATATGTTGATAACTGGCATTAAATTTACTTATATTAGGAAAACAAATCAG
Unaligned ( gi|22 ): TAAAAATAATAAATACATATAGAAAATTGAGATTCATACTATCACATA