lowQualScore : 11111111111111111111111111111
lowQualScore : 2 33 2 2 22222 33 2 333 2 1 2 1 2222 11 1 1 44444444 11 111111 11 222222 111 111111111 111 11 1111 55555555555555555555555555555555555555555555555555555 222222222 11111111111111 3333333333333333333 33333333 1 1111111 1111111 444444444444444444444 1111 111111 1111111111111 1 333333 11111111 1 333333333333333333 11111111111111 22222 22 555555555555555555 22222222222222222222222 111111 6666666666666666666666666 11111111111111111111111111111 33333333333333333333333333
lowQualScore : 3 7 00 6 6 1 77777 33 6 111 6 6 3 6 0 6 6 5555 99 6 33 0 0 6 1 0 777 5 00000000 55 55 4 55 55 4 777 111111 0 55 44 7 3 2 00 1 555555 0 3 8888 3 0 0 8888 111 6 555555555 555 2 66 9999 44 55 1 9 44 00000000000000000000000000000000000000000000000000000 0 222222222 3 666 999 555 3 3 3 99999999999999 44 1 555 3 0 5555555555555555555 3 11111111 3 6 3 444 3 2222222 0 3 888888 3 0000000 333333333333333333333 4444 111111 8888888888888 3 5 0 3 0 222222 00000000 777 6 4 3 888888888888888888 3 77 88888888888888 88 88888 66 111111111111111111 22222222222222222222222 7 7 555555 66 1111111111111111111111111 2 8 9999999 2 777777 44 555 44444444444444444444444444444 5555 444 4 7 00000000000000000000000000 4 55 2 2 3
lowQualScore : . . .. . . . ..... .. . ... . . . . . . . .... .. . .. . . . . . ... . ........ .. .. . .. .. . ... ...... . .. .. . . . .. . ...... . . .... . . . .... ... . ......... ... . .. .... .. .. . . .. ..................................................... . ......... . ... ... ... . . . .............. .. . ... . . ................... . ........ . . . ... . ....... . . ...... . ....... ..................... .... ...... ............. . . . . . ...... ........ ... . . . .................. . .. .............. .. ..... .. .................. ....................... . . ...... .. ......................... . . ....... . ...... .. ... ............................. .... ... . . .......................... . .. . . .
lowQualScore : 2 8 33 7 7 0 00000 33 7 777 7 7 3 7 0 0 7 8888 22 7 33 0 1 7 4 7 666 0 00000000 33 00 0 55 66 0 999 555555 8 00 88 3 6 2 00 4 000000 4 9 3333 7 9 4 5555 888 5 000000000 222 3 66 3333 66 00 4 9 22 55555555555555555555555555555555555555555555555555555 8 999999999 3 444 222 888 3 3 3 66666666666666 66 6 888 3 2 2222222222222222222 1 88888888 1 5 3 888 3 2222222 6 1 888888 1 0000000 222222222222222222222 3333 222222 3333333333333 3 0 1 6 5 000000 22222222 000 8 0 6 444444444444444444 1 33 11111111111111 55 55555 99 222222222222222222 33333333333333333333333 3 9 444444 99 4444444444444444444444444 5 8 3333333 5 777777 22 444 22222222222222222222222222222 0000 111 7 1 11111111111111111111111111 7 44 4 5 1
consensus : GAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGT--AAACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACC----GG--TTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAG-AAA--TG-CGATANCTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCA--GTTGATCACTCGGGTAT--C-TACCACTTCCCGTC----AAGC-A-TGTTTATCTCGCACTACCCG----CCCAAATG--TCGGTGAGA-GTGGATGT-C--GGANCG--TCTGATCAGGGCACCTAAACTA-TAT----G--------A-TG----AC----------CA----TGG----G------GATTTTATT---------TTATCACAA-GCG---TG---C---GATG-A-A-A--------------TTG--ACG---AA-TTAC--GC------ATA-C----ATTTT-GTG------TAAATT-AAACT-GG--GA-GAC-G----ATAAC-A------TGG-ATAT-------CAACATGACC-CG---G-G---A----A---ATA-G-TTC-----GTG-------------AA-TTTTGACTGGGACCTTGCAT-ATCT--AN--TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGATTTGA-TT-----------NT-----G-AT--GAAA--------------TTGA--CGAATCGC-A---CATTTTGTGAAATTAAACTGGTCCA-------------GGAGACG----AT-----A-AC-----NTGGATACTAAC------AT-GACCAC-G-CCGCGGGCCTAAT--TATGCAATTCGTGAATTTTGA-CCGAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGNCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
Reference ( gi|4 ) : GAGAGAATTCTCGTAAAGAACCATTCAATCTAATC-GATGAGT-AACAAGAT--AA-CCAAT-GCAT-GAAAATCCC-ACAA-ACTTA-CATAATCCT-ACGA-TACCTGT-CATGTGACC----AG--TTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAG-AA---TG-CAATAACTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCA--CTTAATCACTCAGGTAT--C-TACCACTTCCCGTC----AAGC-A-TGTTTATTTCGCACTACCCG----CCCAAATG--TCGGTGAGA-TTGGATGT-T--GGATCG--TTTAATTTGGGCACCTAAACTA-TAT----G--------A-TG----AC----------CC----TGG----G------GATTTTATT---------TTATCACAA-GCG---TG---C---GATG-A-A-A--------------TTG--ACG---AA-TTAC--GT------ATA-T----ATTTT-GTG------TAAATT-ATACT-GG--GA-GAC-G----ATAAC-A------TGG-ATAT-------CAACATGACC-CA---G-G---A----A---ATA-G-TTT-----GTG-------------AA-TGTTGACTGGGACCTTGCAT-ATCT--ACG-TGCAA-T-----TTT---TATTTGATG-ATGATCACGAGGATTTGA-TT-----------AT-----G-AT--GAAA--------------TTGA--CGAATCAC-T---CATTTTGTGATTTTAAACTGGTCCA-------------GGAGACG----AT-----A-AC-----TTGGGTACTGAC------AT-AACCAC-G-CCGCGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCTAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|3 : GAGAGAAT---CGTAA-GAACCATTCAAT-TAATC-GATGAGT-AACAAGATAGAA-CGAAT--CAT-GAAAATC----CAA-A-TTACCATAAT-CT-ACGA-TACCTGTCCATGTGA-C----AG--TTCTCTGCAGTGA-TA-TT--A-AACTTGC--TCCACCAATTG--CAATTAG-AA---TG-GCATAA-TGTCATAATACCC--GTTGG--TTTATTAGCTTG-TT-TT------T-AC--TA--CCAA-TGAAGAT-T--AAG--TTTGGTCA--ATTAACTA-TCAGGTA---C-TA-CACTTCCCG-C----AAGC-ATTGTTTATTTCAC
gi|1 : tatagttattgtatttttatttcagtgtatatttaattcattttggatcagagggcggtgacgagtgcggagcacggttctcgccttcgtcaaaataaatcagtacacggaataaatattaaatcttacttgtatccaagccaatagaaggtgctttttcatgaagaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaaccccgaagagtcacgatacatgacatgcggcggacgagacatcgtgaaaagcaaatgcaaagtggtcacctacaaatgtcatttgagtcaaatactacgaagtccatggttttacaagtagcgctcatgtctttaaaaatcttattacgtttattttattgtaatggataatttaagattttaaaagattttatacccttgtataagatttgacaattttttcattgacggacacgggtattattggttttcAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGT--AAACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACC----AG--TTCT-TGC--TGATTATTTAAA-AACTTGCTTTCCACCT--TCACCAATTAG-AAAT-TG-CAATAACTGTCATATGACCCGTG-TGG--TTC-TT-GCGTTA-----------TACC--TCTCCCAATTGAAAAT-TCAAGGTTTTTGGTCAACTTTGATCACTCGGGTAT--CATACCACTTCCCGTC----AATCAA-TGTTTATCTCGCACTACCCG----CCCAAATGCTTCCGTGAGA-GTGGATGT-CTGGGATCAGTTTTAATTTGGGCACCTAAACTA-TAT----G--------ATTG----AC----------CC----TGG----G------GATTTTATT---------TTATCACAACGCG---TGC--C---GATGCA-A-A--------------TTG--ACG---AA-TTAC--GT------ATA-T----ATTTTAGTG------TTATTA-AAACT-GG--CA-GACGG----ATAACAA------TGGAATAT-------CAACATGACC-GG---G-G---A----A---ATA-GTTTT-----GTG-------------AATTTTTGACTGGGACATTGCAT-ATTT--AAATTGCAA-T-----TTT---TATTC-ATGAATGATCACGAGGATTTGATTT-----------AT-----G-ATTGAAAA--------------TTGA--CGAATCGC-A---CATTTTGTGA-ATTAAACTGGTCCAAGGGGGGAGGGGGGGGGACGGGAAATTTAAAA-ACCCCCTTTGGATACTAACTAAACAGT-GACCACAA-CCGCGGGTCTAATAGTATGCAATCCCTGAATTTTGACCCTAGAC-------CT-T------TT--GAAATTGTCACG---CGGT-------------T--------------TTA----CACAGCACA---GTTTTA-AA---------------A----------ATAAT-ATGCAAATGGGAGTTCCGACCCACTGG-TGTATCTCCAGTTACTTGTA
gi|2 : AGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGT--AAACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACC----AG--TTCT-TGC--TGATTATTTAAA-AACTTGCTTTCCACCT--TCACCAATTAG-AAAT-TG-CAATAACTGTCATATGACCCGTG-TGG--TTC-TT-GCGTTA-----------TACC--TCTCCCAATTGAAAAT-TCAAGGTTTTTGGTCAACTTTGATCACTCGGGTAT--CATACCACTTCCCGTC----AATCAA-TGTTTATCTCGcacttttaacaaaggggaagaaaacagccacagcccatttaatacatt
gi|22 : aataatagtttattgtatatttatttcggtgtatcgggattatttgaacgaagggcggtgacgagttgcggagcacgaaattctccgccctatcgcttccaaataaaatcaagactacaccgaaataaagttcaataaacttacttgttatcaagccaatagaaacttgctttatcatgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgacgatttcaccgatagcatgacaatcgcgggccgtggacgaggaatcacgttgggttcaccctacaacatgtttttgagtcaaatttactacgaaaggcccatgtgttttacaagtacgcactgccatgtcttaaaaatcttattcgtttttttattattgtaataaataattaaaggaactttaaaagattctatccttgtatataagcttttacaattcttcacttgacggacccacgtattgttgtttttcgaGAATTCTCTTAAACAACCATTCAAT
gi|11 : ttttgtcgtgtaaggaacaacacgtggtcatcttacagcatgattgctaagtcagtgtgttttacaattactcgctgctatatgtctaactcttattccgtttttcttttctctcaaattattgttctaaaaagaagaacttcagatgtttgagttgtctagtcgccattgacggaccacgtgctattgtttacgaatCT-ACGA-TACCTGT-CAGGTGACC----AG--TTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAG-AA-----------------ATATGACCC--G-TGG--TTC-TT-GTGTGATT-TT------TAAC--TACTCCAA-TGAAAAT-TCAAGG--TTTGGTCA--GTTGATCACTCGGGTAT--C-TACCACTTCCCGTC----AAGC-A-TGTTCATCTCGCACT----------------------GTGAGA-GTGGATGT-C--GGATCG--TTTAATTTGGACACCTAATCTA-TAT----G--------A-TG----AC----------CA----TGG----G------GATTTTATT---------TTATCACAA-TCG---TG---C---GATG-A-A-A--------------TTG--ACG---AA-TTAC--GT------ATA-T----ATTTT-GTG------T-AATT-AAACT-GG--GA-GAA-G----ATAAC-A------TGA-ATAT-------CAACATGA-C-CAGGTG-G---A----A---ATA-G-TTCTAATAGTG-------------AA-TTTTGACTG---------AT-ACCT--A----GCA--------TTT---TATTTCATG-ATGATCATGTGGATTCGA-TT-----------AT-----G-AT--GAAA--------------TTGA--CGAATCGC-gcgat
gi|21 : GA-TGTCTGT-CATATGACCTTGTGGCTTTCT-TGC-GTGATTT-TTAA
gi|39 : gagcgatcacctgacaaaaacttgatattttattggggtaaCTGT-CATATGACCCGT-GG--TTCG-TGC-GTGATTT-TTAaaacttttttaattggtcatgatacaagtgagcaaatcaatatttatttcgctgtatcttgcggaatttagtgtttgcacccgagacaacacgtcgtctacttaaattaagatacaccgaaataaatatacaataactaatact
gi|5 : aaATAA-TCAAT-AGCTTAC-TTGTAACT--TGGCCAAATAG-AA---AGATGATATCTGTAATATGGCCT--G-TGG--CTA-TT-GTGGGA---TT------T--C--TA------------AT-TTTATG--TTTCG------------A---AAGTAT--T-T-CC-CTTTTCGCT----AAGC-A-TGTATTTATCGCACTACTCC----CCCAAATA--TCGGTGAGA-GTGCACGT-C--AGAATG--TGTGACCAGGACACCTAAACTAGTAC----G--------A-TGGTTTACATGATTTCGGTC----TAC----A------GTTTTTATTCCATAA---TGATCACGA-G-GATTTGATTT---GATG-A-A-AAACATGAGATGGGATTA--ATG---AA-TCAC-------------------ATTTT-GTG-------AAATT-AAACT-GG--GA-GAT-A----ATAAA-A------TGG-ATATTCACAGGCAACG-GGCC-TA---G--------------AT----TTT-----AAG-------------AA-TTTTGACTAG-----TGCTT-CTCC--AT--TTCAA-TAAGGATTT---TATTTcatgtaactaccccaatgaaaattcaggattggtcagttgatcact
gi|10 : gtattatgactgttgtttttgtccctttatcaaaattgtacaatgaagagaaatacatcagtagatagaataatcatttgcatattaattttaaattgtgctgtgtagataaattattcaagattgtatgacaatcacccacatacttcttttaagcgagccgcggctcttctttatttaaaTA-TTCAATAACTTAC-TAGTATCA--TGACCAATCAG-AAA--TA-TGATATTTGTCATATGACAC--G-TGG--TTA-TT-GCGTAATT-TT------TAATATTACCCCAA-TGAAAAT-TCAAGG--ATTTGTCA--GGTGATCGCTTGGGTAT--C-TTCCCCTTCCCACC----AAAC-A-CGTTCATCTCACACTGCTCG----CCCAAATG--CTAGTAAGG-GTGGATGT-C--AGAATG--TCTGATCAGGGCTCCAAAACTA-TAT----A--------A-TGATTAAC----------ACGATTTGG----GTCAGCAGTTTTTATCCCATGATTATTATTGCAA-GAA---TG---C---GATG-G-A-A--------------TTG--GTGTATAA-CCACAGGC------CTA-TCTAGATTTT-GTG--------AATT-ttatttcggtgtgtcttgatttatttggacgaagaacggagactcgtgtttcgcactctctaccactttttgtccaataaaaccaagatacaccgaaataaataatagtaaga
gi|21 : caaCTCAC-TTGTATCA--TGACCAATTAA-AAAAGTT-TGATGTCTGTCATATGACCTT-G-TGGCTTTC-TT-GCGTGATT-TT------TAAT--TACCCCAA-T-AAAATATCAAGT--TTTTGTCA--GGTGATCGCTCtttatatcggtgtatgttgatttatttggacgaatggtggagactcgtgcttcgtactcatgcacccttcgtccaaataaatcaagatatatacaacaacaatactattacta
gi|14 : ATCA--TGACTAGTAAGGAA---TA-TAATATCTACAAT---------G-TGG--TTA-TT-TCGTGATTGTT------TAAT--TACAACGT-TGAAAA-------G--TTTTGTCA--GAGGATCACTTCGGTAT--T-TTGCTTTTCTCATCTTGAAAGC------TTATCTCGCAGTACTAA----CCCGATTG--TCGGTACAA-GTGGATGC-CCAGAAT-G--TCTGATCAAAGCACCTCAAC-A--AT----G--------A-------AC----------AC----TGG----------------TGTT---------TTA-CACAA-caaatcaatatttatttcgctgtatcttgcggaatttagtgtttgcacccgagacaacacgtcgtctacttaaattaagatacaccgaaataaatatacaataactaatact
gi|39 : tgataaaatcaattcatcataatcatcactgaataaaaggtgcaaactcaaaAACTGTCATATGACCC--G-TGG--TTC-GT-GCGTGATT-TTTACATGTAAC--TACCCCAA-TGAAAAT-TC-AGG--ATTGGTCA--GTTGATCACTacaataataagctattggatttttatatcggtgtatcttgatttatttggacaaaggacggagaatcgtgcttcgcactcgtcatcacccttcttccaaataaatcaagatactccgatacagatatacaaaaactgatact
gi|19 : TATGATCT--T-TAG--TTA-TT-GCAGGATT-TT------AAA-------------GAAAAT-TCATG----TTCGTCA--GGTGATCGCTTGGGTATATC-TTCCATTTGCCGCC-------------------TCGCACTACCCGGCCGCCCAAAGA--ACGGTGAGA-GTGGATGT-C--AGAATG--TCTGATTAGGGCACCTAAACTA-TAT----G--------A-TG----A
gi|7 : tcaaatcatgtaaaC--TACCCCAA-TGGAAAT-TCAAGG--TTTGGTCA--GTTGATCAATCGGGTAA--T-TACCACTTCCCGTC----AAGC-G-TGTTTATCTCCCATT----------------------GTGAGA-GTGGATGT-A--GGATCG--TTTAATTAGGGCATCTAAACTA-TAT----G--------A-TG----AC----------CA----TGG----G------GATTTTATC---------TTATCACAA-GCG---TG---C---GATG-A-A-A--------------TTG--ACG---AA-TTAC--GTTATCGTATA-T----ATTTT-GTG------T-AATT-AAAAT-GG--AA-GAC-G----ATAAC-A------TGG-ATAT-------CAACATGACCACG---G-G---A----A---ATA-G-TTA-----ATG-------------AA-TTTTGACTGGGACCTTGCAT-AGTT--AAA-TGCAA-T-----TTT---AATTTCATG-ATGATCATGAGGATTCTA-TT-----------TT-----G-AT--GAAA--------------TTGA--CGAATCGC-A---CATTTTGTGAATTTAAACTAGTCCA-------------GGAGACG----AT-----A-AC-----TTGGATACTAAC------AT-AACC-----CC---GAACTA-----ATGCAATTGATGAATTTTGA-CC---GC-------CT-T------TT--AAAATTGTCACG---CGGTATTCAATGATTTAT--------------TTA----CACAGCACA---G-TTTA-GA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCgggtctgactggccacgtttggacgaagggcggaaactcgtgcttttcactcgtcaccagctgtttacaagaagtcaggat
gi|6 : atTTGATCACTCGGGTAT--C-TACCATTTCCCGTC----AAGC-A-TGTTTATCTCGCACTACCCG----CCCAAACG--TCGGTGAGA-GTGGATAT-C--GGATCG--TTTAATTAGGGCACCTAAACTA-TAT----G--------A-TG----AC----------CA----TAG----G------AATTTTATT---------TTATCACAA-GCG---TG---C---GATG-A-A-A--------------TTG--ACA---AA-TTAC--GT------ATA-T----ATTTT-GTG------T-AATT-AAACT-GA--TG-GAC-G----ATAAC-A------TGG-ATAT-------TATCATGACC-AAGG-G-G---A----A---ATA-G-TTA-----GTG-------------AA-TTTTGACTGTGACCCTGCAT-ATTT--AAA-TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGAGTCGA-TT-----------AT-----G-AT--GAAA--------------TTGA--CGAATTGC-A---CATTTTGTGAATTTAAACTGGTCCT-------------GGAGACG----AT-----A-AC-----TTGGATACTAAC------AT-GACCA-------CGGGCC------TATGCAATTGATGAACTTTGA-CTAAGAC-------CT-T------TT--GAAATTGTCACG---CGGTATTCAATGATTTAT--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCTACTGG-TGTATCTCCAGTTA-TTGTA
gi|13 : gCCAAATG---CAGTGAGAGTTGGATGT-C--AGAATG--TCTGATCAGGGCACCTAAACTA-CAT---------------TG----GCAATTTA----CA----TGAATTAG------GGTCTAGTT---------TTAT------GCA---TG---C---GATC-ATACA--------------TGG--ATG---AAATTAT--GA------ATAAC----ATTTT-GTG------AAAATA-A-ACT-GG--GA-GAT-G----ATAAC-A------TGA-ATAT-------TAACATGACCACG---GTG---A----ATTCACACA-TTT-----GTG-------------AA-cactttttacaaagggaaagcaccacagccatgatacaa
gi|12 : tgttgtatcatggctgcggagttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaacgatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgcgtggcaattccaaatacttctaaaaccggatcgcaatctaaagtcagactgaaccggatcgcggctcttcttgattCCAAATG---CAGTGAGA-GTGGATGT-C--AGAATG--TCTGATCAGGGCACCTAAACTA-CATT---GCAATTTACA-TG----AT----------T-----TGG----GTCTA--GTTTTTATG---------TCATGGTGA-TCA---TA---CATGGATG-A-A-A--------------TT-----T---AA-TAAC--A------------------TTT-GTG-------AAAAT-AAACT-GG--GA-GAT-G----ATAAC-A------TGA-ATAT-------TAACATGACC-
gi|9 : gttgtatcatggtgcggatttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaagatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgctaggcatattcaaatactaaaccggatcgcaatctaagtcagactgaccggatcgcggctcttcttgattttcaaaacaaattcctctttaaatgtgtgaattcaccgtATGTGT--GATTCG--TC-AATTT---CATCAAAATCA-AATCCTCG----------TG----AC----------CA----CGA----G------GATCTTATT---------TTATCACAA-GCA---TG---C---GGTG-A-A-A--------------TT---ACG-------TAC--AC------A-A-C----A-----GTGAGACGATAAATGGATGTC-AA--AACGAC-GCGGGAAAAC-AGTTTGGTGA-ATTT-------TGACTGGACC-TA---T-G---C----A---ATA-T-TTT-----ATGCCACGGGGGAAAGAA-TTTTGACTGGGACCTTGCAT-ATTT--A---TGCAGGT-----TTTATATATTTCATG-ATGATCACGAAGATTTGA-TT-----------TT-----G-AT--GAAA--------------TTGA--CGAATCAC-A---CATTTTGTGAATTTAAACTGGTCCA-------------GGAGACA----AT-----A-AC-----CTGGATACTAAC------AT-GACCAC------CGGTC-------TATACAATTGATGAATTTTGA-CGGAGACATTTATAAT-T------TT--GAAATTGTCACG---CGGTATTCAATAATTTAT--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGTGGTTCCG-CCTACTGG-TGCATCTCCAGTTA-TTGTA
gi|15 : AT----G--------A-TA----AT----------TA----TAA----G------GATTTTATT---------TTATCACAA-GCA---TG---C---ATTG-A-A-A--------------TTGAAATA---AA-TCAC------------A-T----ATTTT-GTA------CAA--T-GTA---GA--AA-AAT-GC---AGGAT-A------CTA-GTAT-------CAACTTGGCCGCG---G-GCCTA----A---AT----CTC-----CTG-------------AA-TTTCGACTGGGACTTTACAA-ATCTGAATG-TGcactttt
gi|20 : ccatcatggccgtggtgtttttccctttataaaacgtgtacaataactagggatgcaccagtgggcggaataataatttttatgctttttgggggttttttaaatttaaactgtgctgtgtaaatatatttttgaagaccacttgataatttatcgggctcttcttgattttcaaGA----G------GATTTGATT---------TT-----------------------GATG-A-A-A--------------TTG--ACG---AA-TCAC------------A-C----ATTTT-GTG-------AATTT-AAACT-GGTCCA-GAA-G----AC-------------G-ATAC-------TAACATGACCACG---G-G---C----CT--ACA-A-TTC-----ATG-------------AA-TTTTtaaataaaaaacagtagaaatcgccaatgttcatagttgaggtgctcgtatcagacattctg
gi|17 : ggtcac---C---GGTG-A-T-A--------------TTG--A-----AA-TGAA--AC------ATA-C----ATTTT-ACG-------AAATT-A-ACTTAG--GA-GGT-G----AAAGA-A------TGG-ATAT-------CGACATAACC-CT---G-G---GCCTTG---ATG----TC-----ATG-------------AA-TTTTGACTGCGAtgaaattgtcacgcggtattcaataatttatttccacagttcagtttcaaagtatgcaaatgatggttccgcccactggttgtacactttggacaaagggaaaacaccacagccatgatacaat
gi|18 : atatatacatcaactagagatataggagatataggagtggggaaaactatcatttgcatatcattttgtaaactgtgatgtgtaaataagttaatgaactccatatgatgatttcaaatacgtctaaatcgaatcatggattttcttgctttttaacacgttttcattttacatttgtgaat------ACA-C----ATTTT-GTG-------AAATC-AAACT-GG--GA-GA--------------------------AT-------CAACATG-TC-CG---C-G---A----GCCTATA---TTC-----GTG-------------AA-TTTTGATTGGAACCTCACAC-Aa
gi|42 : ttttatatggatatggtggggtttttcctttgtcaaaagtggacaataactagagatacaccagagggcggaaccatcatttgcatatcatcttaaaactgtgctgtgtaaatgaattattgaacatcgcataacaatttcaaatacatgtagttctaaaccgaatcgtggctctttcttgatC-A------TGG-ATAT-------CAATGTGACCACG---G-GG--A----A---ATA-G-TTC-----GTG-------------AA-TTTTAACTGGGACCTTGC-----------------A-T-----TTT---TATTTCATG-ATGgatg
gi|12 : TTACATGATTT--GGG-TCTAG-T-----TTT---TATGTCATG-GTGATCAT----ACATG----------------------G-AT--GAAA--------------TTTA-----ATAAC------ATTT-GTGAAAATAAACTG------------------GGAGATG----AT-----A-AC-----ATGAATATTAAC------AT-GACCAC-G-
gi|15 : gttgtatcatggtgcggatttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaagatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgctaggcatattcaaatactaaaccggatcgcaatctaagtcagactgaccggatcgcggctcttcttgattttcaaaacaaattcctctttaaatgtgtgaattcacAT-TTCT--AC--TGT---T-----TTT---TATTTAATG-ATAATTATAAGGATTTTA-TTTTATCACAAGCAT-----GCATT-GAAA--------------TTGAAATAAATCAC-A---TATTTTG------TACAATG---TA-------------GAAAA------AT-----GCA--------GGATACTAGT------ATCAACTTG-G-CCGCGGGCCTAA----AT----CTCCTGAATTTCGA-CTGGGAC-------TT-T------attgcaatgtagtttaggtgccctgatcagacattctgacatccactctcactgcatttgg
gi|5 : ccatcatggccgtggtgtttttccctttataaaacgtgtacaataactagggatgcaccagtgggcggaataataatttttatgctttttgggggttttttaaatttaaactgtgctgtgtaaatatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcagatttgt-TACAG-T-----TTT---TATTCCATA-ATGATCACGAGGATTTGA-TT------------T-----G-AT--GAAAAACATGAGATGGGATTAA--TGAATCAC------ATTTTGTGAAATTAAACTG------------------GGAGATA----AT-----A-AA-----ATGGATATT--C------A-----CAG-G-CAACGGGCCTAG----AT----TTTAAGAATTTTGA--CTAGcgccaatgttcatagttgaggtgctcgtatcagacattctg
gi|11 : gtattatgactgttgtttttgtccctttatcaaaattgtacaatgaagagaaatacatcagtagatagaataatcatttgcatattaattttaaattgtgctgtgtagataaattattcaagattgtatgacaatcacccacatacttcttttaagcgagccgcggctcttctttatttaaaaaataaaatccttattgaaatggagaagcaATG-ATGACCATGGGGATTTTA-TTTTATCACA---ATCGTGCG-AT--GAAA--------------TTGA--CGAATTACGTATATATTTTGTGTAATTAAACTG------------------GGAGAAG----AT-----A-AC-----ATGAATATCAAC------AT-GACCA--G---GTGGA---AATAGT-TCTAA-TAGTGAATTTTGA-CTGATAC-------CT-gaccgaaatcatgtaaaccatcgtactagtttaggtgtcctggtcacacattctgacgtgcactctcaccgatatttgggggagtagtgcgataaatacatgcttagcgaaaagggaaatactttcgaaacataaaattagaaatcccacaatagccacaggccatattacagatatcatctttctatttggccaagttacaagtaagctattgattatttatttcggtgtgtcttgatttatttggacgaagaacggagactcgtgtttcgcactctctaccactttttgtccaataaaaccaagatacaccgaaataaataatagtaaga
gi|9 : ctacgatacctgtcaggtgaccagttcttgcgtgattattaaaaacttgcttccaccatgaccaattagaaatatgacccgtggttcttgtgtgatttttaactactccaatgaaaattcaaggtttggtcagttgatcactcgggtatctaccacttcccgtcaagcatgttcatctcgcactgtgagagtggatgtcggatcgtttaatttggacacctaatctatTGGTCACGAGGATTTGA-TT-----------TT-----G-AT--GAAA--------------TTGA--CGAATCAC-A---CATagcattttatttcatgatgatcatgtggattcgattatgatgaaattgacgaatcgc
gi|20 : GGTCACGAGGATTTGA-TT-----------TT-----G-AT--GAAA--------------TTGA--CGAATCAC-A---CATTTTGTGAATTTAAACTGGTCCA-------------GAAGACG----A--------------------TACTAAC------AT-GACCA-------CGGGCCTA--------CAATTCATGAAT---------------------T-T------TT--GAAATTGTCACG---CGGTATTCAATAA----T--------------TTATTTCCACAGTTCA---G-TTTC-AA----------------------------AGT-ATGCAAATGATGGTTCCG-CCCACTGGTTGTAcgaggatcttattttatcacaagcatgcggtgaaattacgtacacaacagtgagacgataaatggatgtcaaaacgacgcgggaaaacagtttggtgaattttgactggacctatgcaatattttatgccacgggggaaagaattttgactgggaccttgcatatttatgcaggttttatatatttcatgatgatcacgaagatttgattttgatgaaattgacgaatcacacattttgtgaatttaaactggtccaggagacaataacctggatactaacatgaccaccggtctatacaattgatgaattttgacggagacatttataattttgaaattgtcacgcggtattcaataatttatttacacagcacagtttaaaaataatatgcaaatggtggttccgcctactggtgcatctccagttattgtacactttt
gi|13 : -----G-AT--GAAA--------------TT-A--TGAATAAC------ATTTTGTGAAAATAAACTG------------------GGAGATG----AT-----A-AC-----ATGAATATTAAC------AT-GACCAC-G-cactttggacaaagggaaaacaccacagccatgatacaat
gi|17 : tgttgtatcatggctgcggagttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaacgatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgcgtggcaattccaaatacttctaaaaccggatcgcaatctaaagtcagactgaaccggatcgcggctcttcttgattttcacaaatgtgtgaattcac-----G-GT--GATA--------------TTGAAATGAAACAT-A---CATTTTACGAAATTAA-CT----TA-------------GGAGGTG----AA-----A-GA-----ATGGATATCGAC------AT-AACC------C-TGGGCCT--TG--ATG----TCATGAATTTTGA-Ccatgtatgatcgcatgcataaaactagaccctaattcatgtaaattgccaatgtagtttaggtgccctgatcagacattctgacatccaactctcactgcatttgg
gi|18 : atatatacatcaactagagatataggagatataggagtggggaaaactatcatttgcatatcattttgtaaactgtgatgtgtaaataagttaatgaactccatatgatgatttcaaatacgtctaaatcgaatcatggattttcttgctttttaacacgttttcattttacatttgtgaattcgcaATCAC-A---CATTTTGTGAAATCAAACTG------------------GGAGA----------------------------------------AT-CAACAT-GTCCGCGAGCCT-AT--------ATTCGTGAATTTTGA-TTGGAAC-------CT-CACACAATCAAGAAAGAGCCACGATTCGG--------------T--------------TTA----GA-ACTACATGTA-TTTG-AA---------------A----------TTGTT-ATGCGAga
gi|26 : ttttatatggatatggtggggtttttcctttgtcaaaagtggacaataactagagatacaccagagggcggaaccatcatttgcatatcatcttaaaactgtgctgtgtaaatgaattattgaaca-AC-----TTGGATACTAACTAAAC-AT-GACCAC-A-CCGCGGGTCTAATAGTATGCAATCCCTGAATTTTGA-CCTAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---GTTTTA-AA---------------A----------ATAAT-ATGCAAATGGGAGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTAg
gi|42 : TGGATATCAAT------GT-GACCAC-G-----GGGA--AATAGT-------TCGTGAATTTTAA-CTGGGAC-------CT-T------cacttttaacaaagggaaaacaccacagccataatacatt
gi|17 : caAATCCATGA--TTCGA-TTTAGAC-------GTAT------TT--GAAATCATCATA---TGGAGTTCATTAACTTAT--------------TTA----CACATCACA---G-TTTACAA---------------A----------ATGAT-ATGCAAATGATAGTTTTC-CCCACTCC-TATATCTCCgcatttttatttcatgatg
gi|30 : atatatacatcaactagagatataGAATTTTGA-CCTAAAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTAttcttgctttttaacacgttttcattttacatttgtgaattcgcagtcaaaattcatgacatcaaggcccagggttatgtcgatatccattctttcacctcctaagttaatttcgtaaaatgtatgtttcatttcaatatcaccga
gi|32 : cATTTTGA-CCGAGAC-------CT-T------TT--GAACGTGTCACG---CGG--------------TATTCAATTATTTATTTA----GACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTAcacttttaacaaagggaaaacaccacagccatgatacaat
gi|28 : cATTTTGA-CCGAGAC-------CT-T------GT--GAAATTGCCACG---CGG--------------TATTCAATGATTGATTTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGCCGTTCCG-CCCACCGG-TGTATCTCCAGTTA-TTGTAacaaagggaaa
gi|13 : cct-T------TT--GGAATTGCCACG---CGG--------------TGTTCAATAATTCATTTA----CATACCATA---G-TTTACAA---------------ATACATGTAGTATAATTATGCAAATGATCGTTCCA-CC-ACTGA-TGTATCGCTAGTTA-TTGTAcactattaacaaaggtaaaacaccacagccatgatacac
gi|18 : tgttgtatcatggctgcggagttttccctttatcaaaagtg-T------TT--GAAATTGTTATG---CGA--------------TGTTCAATAATTCATTTA----CACAGCACA---G-TTTT-AA---------------G----------ATGAT-ATGCAAATGATGGTTCCG-CCCTCTGG-TGTATCTCTAGTTA-TTGTtacttctaaaaccggatcgcaatctaaagtcagactgaaccggatcgcggctcttcttgattttcacaaatgtgtgaattcaccgtggtcatgttaatattcatgttatcatctcccagtttattttcacaaaatgttattcataatttcatccatgtatgatcgcatgcataaaactagaccctaattcatgtaaattgccaatgtagtttaggtgccctgatcagacattctgacatccaactctcactgcatttgg
gi|5 : ttttatatggatatggtggggtttttcctttgtcaaaagtgg--------------T--------------CTA----CACAGCACA---A-TTTA-AA---------------A----------TTAAT-ATGCAAATGATTATTCTA-TCTACTGA-TGTATTTCTCTTCA-TTGTAtacatgtagttctaaaccgaatcgtggctctttcttgattgtgtgaggttccaatcaaaattcacgaatataggctcgcggacatgttgattctcccagtttgatttcacaaaatgtgtgatg
gi|12 : gtattatgactgttgtttttgtccctttatcaaaattg--------------T--------------TTA----CATACCATA---G-TTTACAA---------------ATACATGTAGTATAATTATGCAAATGATC-TTCCA-CC-ACTGA-TGTATCGCTAGTTA-TTGTAtaaattattcaagattgtatgacaatcacccacatacttcttttaagcgagccgcggctcttctttatttaaaaaataaaatccttattgaaatggagaagcactagtcaaaattcttaaaatctaggcccgttgcctgtgaatatccattttattatctcccagtttaatttcacaaaatgtgattcattaatcccatctcatgtttttcatcaaatcaaatcctcgtgatcattatggaataaaaactgtagaccgaaatcatgtaaaccatcgtactagtttaggtgtcctggtcacacattctgacgtgcactctcaccgatatttgggggagtagtgcgataaatacatgcttagcgaaaagggaaatactttcgaaacataaaattagaaatcccacaatagccacaggccatattacagatatcatctttctatttggccaagttacaagtaagctattgattatttatttcggtgtgtcttgatttatttggacgaagaacggagactcgtgtttcgcactctctaccactttttgtccaataaaaccaagatacaccgaaataaataatagtaaga
gi|36 : gttgtatcatggtgcggatttttccctttatcaaaagtg--------------T--------------TTA----CACGGCACA---G-TTTA-AA---------------A-----------TAAT-ATGCAAATGGGCGTTCAA-CCCACTGG-TGTATCTCtgaattattgaacaccgctaggcatattcaaatactaaaccggatcgcaatctaagtcagactgaccggatcgcggctcttcttgattttcaaaacaaattcctctttaaatgtgtgaattcaccgtggtcatgttaatattcatgttatcatctcccagtttattttcacaaatgttattaaatttcatccatgtatgatcaccatgacataaaaactagacccaaatcatgtaaattgcaatgtagtttaggtgccctgatcagacattctgacatccactctcactgcatttgg
gi|15 : cacgctgtattcaatgattta--------------T--------------TTA----CACAGCACA---G-TTTA-AATTTAAAAAACCCCCAA----------AAAGC-ATAAAAATTATTATTCCG-CCCACTGG-TGCATCCCTAGTTA-TTGTAaaaggtaaaacaccacagccatgataaaa
gi|44 : ccatcatggccgtggtgtttttccctttataaaacgtgG-CCCACTAG-TGTAACTCGAGCTA-TTGTAtatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcagatttgtaaagtcccagtcgaaattcaggagatttaggcccgcggccaagttgatactagtatcctgcatttttctacattgtacaaaatatgtgatttatttcaatttcaatgcatgcttgtgataaaataaaatccttataattatcattaaataaaaaacagtagaaatcgccaatgttcatagttgaggtgctcgtatcagacattctg
22 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): AGTAATAGTTATTGTATATTTATTTCGGTGTATCTCGATTTATTTGGACGAAGGGCGGTGACGAGTGCGGAGCACGAGTTTCCGCTCTTCGTCCAAATAAATCAAGATACTACGAAATAAATATTCAATAACTTACTTGTATCAAGGCCATTAGAAACTTGTTTTTATCATGACAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGGGCCGTGGACGAGAATTTATATTTTGTCATGAACGCAAATGCACGTGGTCACCCTACAACATGTTTTGAGTCAAAGTATTACGAAGTCCATGTGTTTTACAAGTACTTGCCATCTTATTCCGTTTTTTTATGTAATAAATAATTAAATACCTTTAAAAGATTTATCCTTGTATATAAGATTTTGC
Unaligned ( gi|16 ): CAAATAAATCAAGATGCACCGAAATAAAAATTCAATAACTTACTTGTATCCAGGCCAATAAAAACTTGTTTGTATCTTGACAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCGGGCCGTGGGCGAGAATTTATATTTTGTCGTAAAAGCAAAAGCACGTGGTCACCCTACAGCATGTTTTGAGAAGTATTTCGAAGCCCATGTGTTTTACAAGTAAGCGCTGTCATATCATGTATTAAAAAAAATCTTATTCCATTTTTTATTGTAAAAAAAAAAACTTA
Unaligned ( gi|23 ): GCCGTTTACCAAGGAATTTCACTAGTCTTGTTCGTGTAGCAACCACACATGGTCACCTCAACGTTTTTGAGTAAAATTAGGTATAGAAGTTCTGTATTTTACATACGGGCACTGCATGCATTAAAAAAAGTCTTATTCCATTTTTTCTTTTGTCTAGAATTCTGTAATAAGAAAAACGACTCAGTCCATCCTTGGTATCATAAGATTTACTACCTTTACTTG
Unaligned ( gi|24 ): GTACAGTGCGCATTTTATCATGTCTTTAAAAAGTCTTATTCCATTTTTCTTTTATTTCAGATAGTTGTAATAGAATAAAGAACATTAAATTATTCATTCCTGTATTTAAGATTTTACTATTTTAGTTTTAAGATTTTACTATTTTAGTTTACTAGTCGTCATTGACGGACCACGTGTTGTTGTTTACGTTTGAATTCACCATCACTCATTCCGATGA
Unaligned ( gi|25 ): CCTGGCCGTGGAGGAGAATCTATATTTTGTTGTAAAAAGCAAAAACACTTGGCCAATCTACAGCATGTTTTGAGTCAAATTATTACGAAGCCCATGTGTTTTACAAGCATGCGCTGCCATGTCTTAAAATTTTTATTGTAATAAATAAAGAACTTCAAAAGATTTATCCTTGTATATAAGATTTTACAATGCTACATTAACGGAC
Unaligned ( gi|27 ): CGGTCCGTGGACGAGAATTCATATTTCATCGTAAAAGCAAAAGCACGTGGTCATCCTAGCCTACAGCATGTTTTAAGTCAAATTATTACGAATCCCATGTGTTTTACAAGTACAAGCTGTCATGTCTTTAAAAAAATCTTATTACGTTTTTTATTGTAATAAAACTTCAAAAGATTTATCCTTGTATACAA
Unaligned ( gi|29 ): ACGTGACAGTATGACTGGGGCTTTACGAAGTCCCTAGTTTAACAATTACGCGCTGTCATGTCTTGAAATATTCTTATTTCGTTTTTCTTTCATCTCAAATTATTGTTATAAAAAAGAAATTCAATATTAGAATATATTCGTCATTGACA
Unaligned ( gi|31 ): TATAATTATTGTATATTTATTTCGGTGTATCTTGGTTCATTTGGGCGAAGGTGGTGACAAGTGCGAAGAACGAGTCGTGTCCTTTCTCCAAAAAACAAAAATCAAGATACTCCGAAATGAACATTCAATACTTATTAATAT
Unaligned ( gi|33 ): GATTACGTGGCACATGAAAAAATATAATTGATCATGAGTAGGATTTGGACGAAGGGCGGGAACTCGTACTCGTCACCGCCTTTTTGGATAAGTCAAGATACACCTAAATAAATACACAATAGCTGTTACG
Unaligned ( gi|34 ): TTATTCGGTTTTTCTTTTATCTCAAATTATTGTAAAACAAAAAACTTCAAATGATCCATTCCTATATATAAGAGTTTGCTAGTCGCCGTTGACGGACCACGTTTTGTTACTCGTAAATGGCCATTCCGT
Unaligned ( gi|35 ): TACTACGAAGCCTATGTGTTTTACAAGTAGCGCTGCCATGTCTTAAAAAATCTTGTTAAAAGTTTTTATTGTAATAAATAATTATGTATATAAGATTTTACAATTCTTCATTGA
Unaligned ( gi|37 ): AACAGTTCTTGTATATTTATTTCGGTATACATGTATCTTGATTTATTTGGACAAAGTGTAAAACACGAGTCTCCGCTCTTTGTGCAAATAAAGCAAGATAC
Unaligned ( gi|38 ): GGCGGTGACGAGTGTGGAGCACGAGTCTCAACCCTTCGTCCGAATAAATCAAGATACACCGAAATACATATCAATAACTTACTTGTATCAAGGCCA
Unaligned ( gi|40 ): AGTAATAGTTATTGTATATATTTTTCGGTGTATCTTTTTTTATTTGGATGCAGGGCGGTGACGTGTGCGGAGCACAA
Unaligned ( gi|41 ): GAGGCTCGTGCTTCGCACTTGTCACCACTCTTCGTCCAAATAAATCAAGATACATAAATATACAGTAGCTATTACT
Unaligned ( gi|43 ): ACCGAAATAAATATTCAATAACTTACTTGTTTTAAAATAGGCCAATAGAAACTTGCTTACAAATATCATGAC
Unaligned ( gi|45 ): CGTCCAAATAAATCAAAATACACCGAAATAGATATATAACATAACTGTT
Unaligned ( gi|46 ): CGCACTTGTCACCGCCTTTCGTCCAAATAAATCAAGATACACCG
Unaligned ( gi|47 ): AAATAAATCACATTCTCATACTCCTCTGCCAACGATT
Unaligned ( gi|48 ): TTTATTTGGACGAAGGGCGGAGACTCGTGTGTC
Unaligned ( gi|49 ): ATAGGACGTTTTAAACATGGTACGTGCTTAATT
Unaligned ( gi|50 ): CGAAACGTGACGTGTGACTGGGGCTTTACAAA
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1 1 1 1 1 1 11 11 1 1 111111 11 111111 11111 111 11111111 33333333333333333333333333333333333 222222222 2222222222222222222 11111111111 11 1111111 222222222222222222 1111 1111111111111 222222 11111111 3333333333333 22222222222222222222 222222 333333333333333333333 1111111 00000000000000000000000000000 22222222222222222222222222
lowQualScore : 3 0 0 55 66 0 3 5 66 2 2 2 5 0 2 0 11 8 6 8 88 1 1 5 0 66 777777 2 33 3 55 44 3 555 000000 44 3 6 3 1 99 2 888 55 7 2 2 7777 999 3 00000 0 333 1 3 3 44 1 44 0 3 3 11111111 2 66666666666666666666666666666666666 3 77777 111111111 3 8888888888888888888 3 555 3 3 3 77777 3 0 66666666666 3 888888 3 77777 88 44 44 88888 44 0000000 3 888888 3 000000000000000000 0000 3 999999 8888888888888 3 888888 66666666 888 5 5 1 66 9 1111111111111 33333333333333333333 666666 999999999999999999999 6 3 3 0000000 2 888888 33 555 77777777777777777777777777777 4444 333 4 6 77777777777777777777777777 4 11 2 2 2
lowQualScore : . . . .. .. . . . .. . . . . . . . .. . . . .. . . . . .. ...... . .. . .. .. . ... ...... .. . . . . .. . ... .. . . . .... ... . ..... . ... . . . .. . .. . . . ........ . ................................... . ..... ......... . ................... . ... . . . ..... . . ........... . ...... . ..... .. .. .. ..... .. ....... . ...... . .................. .... . ...... ............. . ...... ........ ... . . . .. . ............. .................... ...... ..................... . . . ....... . ...... .. ... ............................. .... ... . . .......................... . .. . . .
lowQualScore : 2 0 0 00 55 0 2 5 55 5 5 5 0 0 5 8 44 0 0 0 00 4 4 7 0 11 777777 4 66 6 00 22 6 555 555555 66 1 7 3 2 22 5 888 00 3 5 6 7777 999 6 33333 1 000 2 6 6 66 0 66 1 3 1 22222222 9 22222222222222222222222222222222222 1 77777 222222222 3 2222222222222222222 3 888 3 3 3 88888 3 5 00000000000 1 222222 1 77777 00 22 66 33333 99 8888888 1 888888 1 888888888888888888 2222 3 222222 3333333333333 3 888888 55555555 888 7 0 0 99 6 4444444444444 11111111111111111111 999999 000000000000000000000 2 3 8 8888888 9 222222 99 000 44444444444444444444444444444 7777 999 4 7 99999999999999999999999999 4 77 2 4 9
consensus : GAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--TGCGATANCTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAATG--TCGGTGAGAGT-GGATG-TC--GGAACG--TCTGATCAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GC------AT-A-C----ATTTT-G-----TGTAAAT--TAAACTG--GG-----AGAC-GAT-------AAC-A------TGG-ATATCAACATGACCA-C-G--G-G---AA---ATA-G-T-TC-----GTG-------------AA-TTTTGACTGGGACCTTGCATATCT--A---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGATTCGA-TTNTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCAC--CCGCGGGCCTAATAGT-ATGCAATTCATGAATTTTGA-CCGAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGNCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
Reference ( family-2591 ) : GAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCGGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--TGCGATANCTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAATG--TCGGTGAGAGT-GGATG-TC--GGANCG--TCTGATCAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GC------AT-A-C----ATTTT-G-----TGTAAAT--TAAACTG--GG-----AGAC-GAT-------AAC-A------TGG-ATATCAACATGACC--C-G--G-G---AA---ATA-G-T-TC-----GTG-------------AA-TTTTGACTGGGACCTTGCATATCT--A-N-TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGATTTGA-TTNTGAT--GAAATTGACGAATCGCACATTTTGTGAAATTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----NTGGATACTAAC------ATGACCAC-GCCGCGGGCCTAAT--T-ATGCAATTCGTGAATTTTGA-CCGAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGNCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|1 : AGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC--TGATTATTTAAA-AACTTGCTTTCCACCT--TCACCAATTAGAAAT-TGCAATAACTGTCATATGACCCGTG-TGG--TTC-TT-GCGTTA-----------TACC--TCTCCCAATTGAAAAT-TCAAGGTTTTTGGTCAACTTTGATCACTCGGG--TATCATACCACTTCCCGTC----AATCAA-TGTTTATCTCGCACTAC----CCGCCCAAATGCTTCCGTGAGAGT-GGATG-TCTGGGATCAGTTTTAATTTGGGCACCTAAACTA-TA-TG--------ATTGAC------CC--------TG-----G----G------GATTT-TA-----TT---------TTATCACAACG-------------------CGTGCC---GATGCA-A-ATTGACG---AA-TTAC--GT------AT-A-T----ATTTTAG-----TGTTATT--AAAACTG--GC-----AGACGGAT-------AACAA------TGGAATATCAACATGACC--G-G--G-G---AA---ATA-GTT-TT-----GTG-------------AATTTTTGACTGGGACATTGCATATTTAAA-T-TGCAA-T-----TTT---TA-TTCATGAATGATCACGAGGATTTGATTTATGATTGAAAATTGACGAATCGCACATTTTGTG-AATTAAACTGGTCCAAGGGGGGAGGGGGGGGGACGGGAAATTTAAAAACCCCCTTTGGATACTAACTAAACAGTGACCACAACCGCGGGTCTAATAGT-ATGCAATCCCTGAATTTTGACCCTAGAC-------CT-T------TT--GAAATTGTCACG---CGGT-------------T--------------TTA----CACAGCACA---GTTTTA-AA---------------A----------ATAAT-ATGCAAATGGGAGTTCCGACCCACTGG-TGTATCTCCAGTTACTTGTA
gi|10 : TA-TTCAATAACTTAC-TAGTATCA--TGACCAATCAGAAA--TATGATATTTGTCATATGACAC--G-TGG--TTA-TT-GCGTAATT-TT------TAATATTACCCCAA-TGAAAAT-TCAAGG--ATTTGTCAG--GTGATCGCTTGGG--TATC-TTCCCCTTCCCACC----AAAC-A-CGTTCATCTCACACTGC----TCGCCCAAATG--CTAGTAAGGGT-GGATG-TC--AGAATG--TCTGATCAGGGCTCCAAAACTA-TA-TA--------A-TGAT------TAACACGATTTG-----G----GTCAGCAGTTTT-TA-----TCCCATGATTATTATTGCAA-G-------------------AATG-C---GATG-G-A-ATTGGTGTATAA-CCACAGGC------CT-A-TCTAGATTTT-G-----TG--AAT--Tcacttttaacaaaggggaagaaaacagccacagcccatttaatacatt
gi|11 : caaTACGA-TACCTGT-CAGGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--T--------------ATGACCC--G-TGG--TTC-TT-GTGTGATT-TT------TAAC--TACTCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTCATCTCGCACT----------------------GTGAGAGT-GGATG-TC--GGATCG--TTTAATTTGGACACCTAATCTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-T-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GT------AT-A-T----ATTTT-G-----TGT-AAT--TAAACTG--GG-----AGAA-GAT-------AAC-A------TGA-ATATCAACATGACC--A-GGTG-G---AA---ATA-G-T-TCTAATAGTG-------------AA-TTTTGACTG---------ATACCT--A----GCA--------TTT---TATTTCATG-ATGATCATGTGGATTCGA-TTATGAT--GAAATTGACGAATCGCtttatatcggtgtatgttgatttatttggacgaatggtggagactcgtgcttcgtactcatgcacccttcgtccaaataaatcaagatatatacaacaacaatactattacta
gi|12 : c--------------T--------------TTA----CATACCATA---G-TTTACAA---------------ATACATGTAGTATAATTATGCAAATGATC-TTCCA-CC-ACTGA-TGTATCGCTAGTTA-TTGTA
gi|12 : gttgtatcatggtgcggatttttccctttatcaaaagtgCCAAATG---CAGTGAGAGT-GGATG-TC--AGAATG--TCTGATCAGGGCACCTAAACTA-CATTGCAATTTACA-TGAT------T---------TG-----G----GTCTA--GTTTT-TA-----TG---------TCATGGTGA-T-------------------CATA-CATGGATG-A-A-AT-----------TTA-----------ATAA-C----A-TTT-G-----TG-AAAA--TAAACTG--GG-----AGAT-GAT-------AAC-A------TGA-ATATTAACATGACCA-C-G--G-T---GA---ATtgaattattgaacaccgctaggcatattcaaatactaaaccggatcgcaatctaagtcagactgaccggatcgcggctcttcttgattttcaaaacaaattcctctttaaatgtgtgaattcaccgtggtcatgttaatattcatgttatcatctcccagtttattttcacaaatgttattaaatttcatccatgtatgatcaccatgacataaaaactagacccaaatcatgtaaattgcaatgtagtttaggtgccctgatcagacattctgacatccactctcactgcatttgg
gi|13 : gttgtatcatggtgcggatttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaagatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgctaggcatattcaaatactaaaccggatcgcaatctaagtcagactgaccggatcgcggctcttcttgattttcaaaacaaattcctctttaaatgtgtga-T------TT--GGAATTGCCACG---CGG--------------TGTTCAATAATTCATTTA----CATACCATA---G-TTTACAA---------------ATACATGTAGTATAATTATGCAAATGATCGTTCCA-CC-ACTGA-TGTATCGCTAGTTA-TTGTA
gi|13 : tgttgtatcatggctgcggagttttccctttatcaaaagtgCCAAATG---CAGTGAGAGTTGGATG-TC--AGAATG--TCTGATCAGGGCACCTAAACTA-CA-T-----------TGGCAATTTACA--------TG-----AATTAG------GGTCT-AG-----TT---------TTAT------G-------------------CATG-C---GATC-ATACATGGATG---AAATTAT--GA------AT-AAC----ATTTT-G-----TGAAAAT---AAACTG--GG-----AGAT-GAT-------AAC-A------TGA-ATATTAACATGACCA-C-G--GTG---AATTCACACA-T-TT-----GTG-------------AA-tacttctaaaaccggatcgcaatctaaagtcagactgaaccggatcgcggctcttcttgattttcacaaatgtgtgaattcaccgtggtcatgttaatattcatgttatcatctcccagtttattttcacaaaatgttattcataatttcatccatgtatgatcgcatgcataaaactagaccctaattcatgtaaattgccaatgtagtttaggtgccctgatcagacattctgacatccaactctcactgcatttgg
gi|14 : tgttgtatcatggctgcggagttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaacgatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgcgtggcaattccaaatacttctaaaaccggatcgcaatctaaagtcagactgaaccggatcgcggctcttcttgattATCA--TGACTAGTAAGGAA--TATAATATCTACAAT---------G-TGG--TTA-TT-TCGTGATTGTT------TAAT--TACAACGT-TGAAAA-------G--TTTTGTCAG--AGGATCACTTCGG--TATT-TTGCTTTTCTCATCTTGAAAGC------TTATCTCGCAGTAC----TAACCCGATTG--TCGGTACAAGT-GGATGCCC--AGAATG--TCTGATCAAAGCACCTCAAC-------A--------A-TGAA------CAC-------TG-----G-----------------TG-----TT---------TTA-CACAA-
gi|15 : tgataaaatcaattcatcataatcatcactgaataaaaggtgcaaactcaaa--------------T--------------TTA----CACAGCACA---G-TTTA-AATTTAAAAAACCCCCAA----------AAAGC-ATAAAAATTATTATTCCG-CCCACTGG-TGCATCCCTAGTTA-TTGTAacaataataagctattggatttttatatcggtgtatcttgatttatttggacaaaggacggagaatcgtgcttcgcactcgtcatcacccttcttccaaataaatcaagatactccgatacagatatacaaaaactgatact
gi|15 : ccatcatggccgtggtgtttttccctttataaaacgtgA-TG--------A-TAAT------TA--------TA-----A----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CATG-C---ATTG-A-A-ATTGA-----AA-TAAA--TC------AC-A-T----ATTTT-GTACAATGTAGA----AAAATGCAGG-----ATAC----------------------TAG--TATCAACTTGGCCG-C-G--G-GCCTAA---AT----C-TC-----CTG-------------AA-TTTCGACTGGGACTTTACAAATCTG-A-A-TGtatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcagatttgtaaagtcccagtcgaaattcaggagatttaggcccgcggccaagttgatactagtatcctgcatttttctacattgtacaaaatatgtgatttatttcaatttcaatgcatgcttgtgataaaataaaatccttataattatcattaaataaaaaacagtagaaatcgccaatgttcatagttgaggtgctcgtatcagacattctg
gi|15 : ccatcatggccgtggtgtttttccctttataaaacgtgtacaataactagggatgcaccagtgggcggaataataatttttatgctttttgggggttttttaaatttaaactgtgctgtgtaaatatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacaC--AGAATG--TCTGATACGAGCACCTCAACT---------------A-TGAA------CAT-------TG-----G----C------GATTTCTACTGTTTT---------TTATtaaataaaaaacagtagaaatcgccaatgttcatagttgaggtgctcgtatcagacattctg
gi|17 : ccatcatggccgtggtgtttttccctttataaaacgtgtacaataactagggatgcaccagtgggcggaataataatttttatgctttttgggggttttttaaatttaaactgtgctgtgtaaatatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcagatttgtaaagtcccagtcgaaattcaggagatttaggcccgcggccaagttgatactagtatcctgcatttttctacattgtacaaaatatgtgatttatttcaatttcaatgcatgcttgtgataaaataaaatccttataattatcattaaAATCCATGA--TTCGA-TTTAGAC-------GTAT------TT--GAAATCATCATA---TGGAGTTCATTAACTTAT--------------TTA----CACATCACA---G-TTTACAA---------------A----------ATGAT-ATGCAAATGATAGTTTTC-CCCACTCC-TATATCTCC
gi|17 : atatatacatcaactagagatata-C---GGTG-A-T-ATTGA-----AA-TGAA--AC------AT-A-C----ATTTT-A-----CG-AAAT--TAACTTA--GG-----AGGT-GAA-------AGA-A------TGG-ATATCGACATAACC--CTG--G-G---CC---TTG-A-TGTC-----ATG-------------AA-TTTTGACTGCGAttcttgctttttaacacgttttcattttacatttgtgaattcgcagtcaaaattcatgacatcaaggcccagggttatgtcgatatccattctttcacctcctaagttaatttcgtaaaatgtatgtttcatttcaatatcaccga
gi|18 : atatatacatcaactagagatataggagatataggagtggggaaaactatcatttgcatatcattttgtaaactgtgatgtgtaaataagttaatgaactccatatgatgatttcaaatacgtctaaatcgaatcatggattttcttgctttttaacacgttttcattttacatttgtgaat-T------TT--GAAATTGTTATG---CGA--------------TGTTCAATAATTCATTTA----CACAGCACA---G-TTTT-AA---------------G----------ATGAT-ATGCAAATGATGGTTCCG-CCCTCTGG-TGTATCTCTAGTTA-TTGTa
gi|18 : ttttatatggatatggtggggtttttcctttgtcaaaagtggATCACACATTTTGTGAAATCAAACTG------------------GGAGA---------------------------ATCAAC------ATG------TCCGCGAGCCT-AT---------ATTCGTGAATTTTGA-TTGGAAC-------CT-CACACAATCAAGAAAGAGCCACGATTCGG--------------T--------------TTA----GA-ACTACATGTA-TTTG-AA---------------A----------TTGTT-ATGCGAtacatgtagttctaaaccgaatcgtggctctttcttgattgtgtgaggttccaatcaaaattcacgaatataggctcgcggacatgttgattctcccagtttgatttcacaaaatgtgtgatg
gi|18 : ttttatatggatatggtggggtttttcctttgtcaaaagtggacaataactagagatacaccagagggcggaaccatcatttgcatatcatcttaaaactgtgctgtgtaaatgaattattgaacaC------AC-A-C----ATTTT-G-----TG-AAAT--CAAACTG--GG-----AGA-----------------------------ATCAACATG-TC--C-G--C-G---AGCCTATA---T-TC-----GTG-------------AA-TTTTGATTGGAACCTCACACAg
gi|19 : ttttatatggatatggtggggtttttcctttgtcaaaagtggacaataactagagatacaccagagggcggaaccatcatttgcatatcatcttaaaactgtgctgtgtaaatgaattattgaacatcgcataacaatttcaaatacatgtagttctaaaccgaatcgtggctctttcttgatTATGATCT--T-TAG--TTA-TT-GCAGGATT-TT------AAA-------------GAAAAT-TCATG----TTCGTCAG--GTGATCGCTTGGGTATATC-TTCCATTTGCCG-------------------CCTCGCACTACCCGGCCGCCCAAAGA--ACGGTGAGAGT-GGATG-TC--AGAATG--TCTGATTAGGGCACCTAAACTA-TA-TG--------A-TGAatg
gi|2 : tcaaatcatgtaaaAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC--TGATTATTTAAA-AACTTGCTTTCCACCT--TCACCAATTAGAAAT-TGCAATAACTGTCATATGACCCGTG-TGG--TTC-TT-GCGTTA-----------TACC--TCTCCCAATTGAAAAT-TCAAGGTTTTTGGTCAACTTTGATCACTCGGG--TATCATACCACTTCCCGTC----AATCAA-TGTTTATCTCGgggtctgactggccacgtttggacgaagggcggaaactcgtgcttttcactcgtcaccagctgtttacaagaagtcaggat
gi|20 : aataatagtttattgtatatttatttcggtgtatcgggattatttgaacgaagggcggtgacgagttgcggagcacgaaattctccgccctatcgcttccaaataaaatcaagactacaccgaaataaagttcaataaacttacttgttatcaagccaatagaaacttgctttatcatgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgacgatttcaccgatagcatgacaatcgcgggccgtggacgaggaatcacgttgggttcaccctacaacatgtttttgagtcaaatttactacgaaaggcccatgtgttttacaagtacgcactgccatgtcttaaaaatcttattcgtttttttattattgtaataaataattaaaggaactttaaaagattctatccttgtatataagcttttacaattcttcacttgacggacccacgtattgttgtttttcgaGGTCACGAGGATTTGA-TTTTGAT--GAAATTGACGAATCACACATTTTGTGAATTTAAACTGGTCCA-------------GAAGACG----AT-----A--------------CTAAC------ATGACCA------CGGGCCTA---------CAATTCATGAAT---------------------T-T------TT--GAAATTGTCACG---CGGTATTCAATAA----T--------------TTATTTCCACAGTTCA---G-TTTC-AA----------------------------AGT-ATGCAAATGATGGTTCCG-CCCACTGGTTGTA
gi|21 : CTCAC-TTGTATCA--TGACCAATTAAAAAAGTTTGATGTCTGTCATATGACCTT-G-TGGCTTTC-TT-GCGTGATT-TT------TAAT--TACCCCAA-T-AAAATATCAAGT--TTTTGTCAG--GTGATCGCTCcactttggacaaagggaaaacaccacagccatgatacaat
gi|26 : AC-----TTGGATACTAACTAAAC-ATGACCAC-ACCGCGGGTCTAATAGT-ATGCAATCCCTGAATTTTGA-CCTAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---GTTTTA-AA---------------A----------ATAAT-ATGCAAATGGGAGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTAcaaatcaatatttatttcgctgtatcttgcggaatttagtgtttgcacccgagacaacacgtcgtctacttaaattaagatacaccgaaataaatatacaataactaatact
gi|28 : ATTTTGA-CCGAGAC-------CT-T------GT--GAAATTGCCACG---CGG--------------TATTCAATGATTGATTTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGCCGTTCCG-CCCACCGG-TGTATCTCCAGTTA-TTGTAcacttttaacaaagggaaaacaccacagccataatacatt
gi|3 : cctGAGAGAAT---CGTAA-GAACCATTCAATT-AAT-CGATGAG-TAACAAGATAGAACGAAT--CA-TGAAAAT--CCA-AA---TTACCATAATC--TACG-ATACCTGTCCATGTGA-CAGTTCTCTGCAGTGA-TA-TT--A-AACTTGC--TCCACCAATTG--CAATTAG-AA--TGGCATAA-TGTCATAATACCC--GTTGG--TTTATTAGCTTG-TT-TT------T-AC--TA--CCAA-TGAAGAT-T--AAG--TTTGGTCAA--TTAACTA-TCAGG--TA-C-TA-CACTTCCCG-C----AAGC-ATTGTTTATTTCACcactattaacaaaggtaaaacaccacagccatgatacac
gi|30 : tatagttattgtatttttatttcagtgtatatttaattcattttggatcagagggcggtgacgagtgcggagcacggttctcgccttcgtcaaaataaatcagtacacggaataaatattaaatcttacttgtatccaagccaatagaaggtgctttttcatgaagaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaaccccgaagagtcacgatacatgacatgcggcggacgagacatcgtgaaaagcaaatgcaaagtggtcacctacaaatgtcatttgagtcaaatactacgaagtccatggttttacaagtagcgctcatgtctttaaaaatcttattacgtttattttattgtaatggataatttaagattttaaaagattttatacccttgtataagatttgacaattttttcattgacggacacgggtattattggttttcGAATTTTGA-CCTAAAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|32 : cATTTTGA-CCGAGAC-------CT-T------TT--GAACGTGTCACG---CGG--------------TATTCAATTATTTATTTA----GACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTAcacttttaacaaagggaaaacaccacagccatgatacaat
gi|36 : c--------------T--------------TTA----CACGGCACA---G-TTTA-AA---------------A-----------TAAT-ATGCAAATGGGCGTTCAA-CCCACTGG-TGTATCTCacaaagggaaa
gi|39 : cacgctgtattcaatgatttaAACTGTCATATGACCC--G-TGG--TTC-GT-GCGTGATT-TTTACATGTAAC--TACCCCAA-TGAAAAT-TC-AGG--ATTGGTCAG--TTGATCACTaaaggtaaaacaccacagccatgataaaa
gi|4 : GAGAGAATTCTCGTAAAGAACCATTCAATCTAATC-GATGAGT-AACAAGATA-A-CCAAT-GCAT-GAAAATCCC-ACAA-ACTTA-CATAATCCT-ACGA-TACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAA---TGCAATAACTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAC--TTAATCACTCAGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATTTCGCACTAC----CCGCCCAAATG--TCGGTGAGATT-GGATG-TT--GGATCG--TTTAATTTGGGCACCTAAACTA-TA-TG--------A-TGAC------CC--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GT------AT-A-T----ATTTT-G-----TGTAAAT--TATACTG--GG-----AGAC-GAT-------AAC-A------TGG-ATATCAACATGACC--C-A--G-G---AA---ATA-G-T-TT-----GTG-------------AA-TGTTGACTGGGACCTTGCATATCT--ACG-TGCAA-T-----TTT---TATTTGATG-ATGATCACGAGGATTTGA-TTATGAT--GAAATTGACGAATCACTCATTTTGTGATTTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGGTACTGAC------ATAACCAC-GCCGCGGGCCTAATAGT-ATGCAATTCATGAATTTTGA-CCTAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|42 : C-A------TGG-ATATCAATGTGACCA-C-G--G-GG--AA---ATA-G-T-TC-----GTG-------------AA-TTTTAACTGGGACCTTGCAT----------------------TTT---TATTTCATG-ATG
gi|44 : G-CCCACTAG-TGTAACTCGAGCTA-TTGTA
gi|5 : --------------T--------------CTA----CACAGCACA---A-TTTA-AA---------------A----------TTAAT-ATGCAAATGATTATTCTA-TCTACTGA-TGTATTTCTCTTCA-TTGTAcacttttaacaaagggaaaaaaaccacagccatgatacaaa
gi|5 : gtattatgactgttgtttttgtccctttatcaaaattgATAA-TCAAT-AGCTTAC-TTGTAACT--TGGCCAAATAGAAA--GATGATATCTGTAATATGGCCT--G-TGG--CTA-TT-GTGGGA---TT------T--C--TA------------AT-TTTATG--TTT---------CGA------AAG--TATT-T-CC-CTTTTCGCT----AAGC-A-TGTATTTATCGCACTAC----TCCCCCAAATA--TCGGTGAGAGT-GCACG-TC--AGAATG--TGTGACCAGGACACCTAAACTAGTA-CG--------A-TGGTTTA---CA--------TGATTTCG----GTCTACAGTTTT-TA-----TTCCATAA---TGATCACGA-GGATTTGATTTGATGAAAAACATG-A---GATG-G-G-ATTAATG---AA-T--------------C-A-C----ATTTT-G-----TG-AAAT--TAAACTG--GG-----AGAT-AAT-------AAA-A------TGG-ATATTCACAGGCAA--C-G--G-GCCTAG---AT----T-TT-----AAG-------------AA-TTTTGACTAG-----TGCTTCTCC--A-T-TTCAA-TAAGGATTT---TATTTtaaattattcaagattgtatgacaatcacccacatacttcttttaagcgagccgcggctcttctttatttaaaaaataaaatccttattgaaatggagaagcactagtcaaaattcttaaaatctaggcccgttgcctgtgaatatccattttattatctcccagtttaatttcacaaaatgtgattcattaatcccatctcatgtttttcatcaaatcaaatcctcgtgatcattatggaataaaaactgtagaccgaaatcatgtaaaccatcgtactagtttaggtgtcctggtcacacattctgacgtgcactctcaccgatatttgggggagtagtgcgataaatacatgcttagcgaaaagggaaatactttcgaaacataaaattagaaatcccacaatagccacaggccatattacagatatcatctttctatttggccaagttacaagtaagctattgattatttatttcggtgtgtcttgatttatttggacgaagaacggagactcgtgtttcgcactctctaccactttttgtccaataaaaccaagatacaccgaaataaataatagtaaga
gi|6 : gtattatgactgttgtttttgtccctttatcaaaattgtacaatgaagagaaatacatcagtagatagaataatcatttgcatattaattttaaattgtgctgtgtagataaattattcaagattgtatgacaatcacccacatacttcttttaagcgagccgcggctcttctttatttaaaG--TTGATCACTCGGG--TATC-TACCATTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAACG--TCGGTGAGAGT-GGATA-TC--GGATCG--TTTAATTAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TA-----G----G------AATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACA---AA-TTAC--GT------AT-A-T----ATTTT-G-----TGT-AAT--TAAACTG--AT-----GGAC-GAT-------AAC-A------TGG-ATATTATCATGACCAAG-G--G-G---AA---ATA-G-T-TA-----GTG-------------AA-TTTTGACTGTGACCCTGCATATTTA-A-A-TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGAGTCGA-TTATGAT--GAAATTGACGAATTGCACATTTTGTGAATTTAAACTGGTCCT-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCA------CGGGCC------T-ATGCAATTGATGAACTTTGA-CTAAGAC-------CT-T------TT--GAAATTGTCACG---CGGTATTCAATGATTTAT--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCTACTGG-TGTATCTCCAGTTA-TTGTAttatttcggtgtgtcttgatttatttggacgaagaacggagactcgtgtttcgcactctctaccactttttgtccaataaaaccaagatacaccgaaataaataatagtaaga
gi|7 : C--TACCCCAA-TGGAAAT-TCAAGG--TTTGGTCAG--TTGATCAATCGGG--TAAT-TACCACTTCCCGTC----AAGC-G-TGTTTATCTCCCATT----------------------GTGAGAGT-GGATG-TA--GGATCG--TTTAATTAGGGCATCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TC---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GTTATCGTAT-A-T----ATTTT-G-----TGTAA-T--TAAAATG--GA-----AGAC-GAT-------AAC-A------TGG-ATATCAACATGACCA-C-G--G-G---AA---ATA-G-T-TA-----ATG-------------AA-TTTTGACTGGGACCTTGCATAGTT--A-AATGCAA-T-----TTT---AATTTCATG-ATGATCATGAGGATTCTA-TTTTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTAGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATAACC----CCG-------AAC--TAATGCAATTGATGAATTTTGA-CCG---C-------CT-T------TT--AAAATTGTCACG---CGGTATTCAATGATTTAT--------------TTA----CACAGCACA---G-TTTA-GA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCcactttttacaaagggaaagcaccacagccatgatacaa
gi|9 : atTGGTCACGAGGATTTGA-TTTTGAT--GAAATTGACGAATCACACAT
gi|9 : -TGAC------CA--------CG-----A----G------GATCT-TA-----TT---------TTATCACAA-G-------------------CATG-C---GGTG-A-A-ATT-ACG-------TAC--AC------A--A-C----A-----G-----TG-AGACGATAAA-TG--GATGTCAAAAC-GACGCGGGAAAAC-AGTTTGGTGA-ATTTTGACTGGACC--T-A--T-G---CA---ATA-T-T-TT-----ATGCCACGGGGGAAAGAA-TTTTGACTGGGACCTTGCATATTT--A---TGCAGGT-----TTTATATATTTCATG-ATGATCACGAAGATTTGA-TTTTGAT--GAAATTGACGAATCACACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACA----AT-----AAC-----CTGGATACTAAC------ATGACCAC-----CGGTC-------T-ATACAATTGATGAATTTTGA-CGGAGACATTTATAAT-T------TT--GAAATTGTCACG---CGGTATTCAATAATTTAT--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGTGGTTCCG-CCTACTGG-TGCATCTCCAGTTA-TTGTAcgaggatcttattttatcacaagcatgcggtgaaattacgtacacaacagtgagacgataaatggatgtcaaaacgacgcgggaaaacagtttggtgaattttgactggacctatgcaatattttatgccacgggggaaagaattttgactgggaccttgcatatttatgcaggttttatatatttcatgatgatcacgaagatttgattttgatgaaattgacgaatcacacattttgtgaatttaaactggtccaggagacaataacctggatactaacatgaccaccggtctatacaattgatgaattttgacggagacatttataattttgaaattgtcacgcggtattcaataatttatttacacagcacagtttaaaaataatatgcaaatggtggttccgcctactggtgcatctccagttattgtacactttt
23 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AGTAATAGTTATTGTATATTTATTTCGGTGTATCTCGATTTATTTGGACGAAGGGCGGTGACGAGTGCGGAGCACGAGTTTCCGCTCTTCGTCCAAATAAATCAAGATACTACGAAATAAATATTCAATAACTTACTTGTATCAAGGCCATTAGAAACTTGTTTTTATCATGACAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGGGCCGTGGACGAGAATTTATATTTTGTCATGAACGCAAATGCACGTGGTCACCCTACAACATGTTTTGAGTCAAAGTATTACGAAGTCCATGTGTTTTACAAGTACTTGCCATCTTATTCCGTTTTTTTATGTAATAAATAATTAAATACCTTTAAAAGATTTATCCTTGTATATAAGATTTTGC
Unaligned ( gi|16 ): CAAATAAATCAAGATGCACCGAAATAAAAATTCAATAACTTACTTGTATCCAGGCCAATAAAAACTTGTTTGTATCTTGACAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCGGGCCGTGGGCGAGAATTTATATTTTGTCGTAAAAGCAAAAGCACGTGGTCACCCTACAGCATGTTTTGAGAAGTATTTCGAAGCCCATGTGTTTTACAAGTAAGCGCTGTCATATCATGTATTAAAAAAAATCTTATTCCATTTTTTATTGTAAAAAAAAAAACTTA
Unaligned ( gi|22 ): TTTTGTCGTGTAAGGAACAACACGTGGTCATCTTACAGCATGATTGCTAAGTCAGTGTGTTTTACAATTACTCGCTGCTATATGTCTAACTCTTATTCCGTTTTTCTTTTCTCTCAAATTATTGTTCTAAAAAGAAGAACTTCAGATGTTTGAGTTGTCTAGTCGCCATTGACGGACCACGTGCTATTGTTTACGAATGAATTCTCTTAAACAACCATTCAATGCGAT
Unaligned ( gi|23 ): GCCGTTTACCAAGGAATTTCACTAGTCTTGTTCGTGTAGCAACCACACATGGTCACCTCAACGTTTTTGAGTAAAATTAGGTATAGAAGTTCTGTATTTTACATACGGGCACTGCATGCATTAAAAAAAGTCTTATTCCATTTTTTCTTTTGTCTAGAATTCTGTAATAAGAAAAACGACTCAGTCCATCCTTGGTATCATAAGATTTACTACCTTTACTTG
Unaligned ( gi|24 ): GTACAGTGCGCATTTTATCATGTCTTTAAAAAGTCTTATTCCATTTTTCTTTTATTTCAGATAGTTGTAATAGAATAAAGAACATTAAATTATTCATTCCTGTATTTAAGATTTTACTATTTTAGTTTTAAGATTTTACTATTTTAGTTTACTAGTCGTCATTGACGGACCACGTGTTGTTGTTTACGTTTGAATTCACCATCACTCATTCCGATGA
Unaligned ( gi|25 ): CCTGGCCGTGGAGGAGAATCTATATTTTGTTGTAAAAAGCAAAAACACTTGGCCAATCTACAGCATGTTTTGAGTCAAATTATTACGAAGCCCATGTGTTTTACAAGCATGCGCTGCCATGTCTTAAAATTTTTATTGTAATAAATAAAGAACTTCAAAAGATTTATCCTTGTATATAAGATTTTACAATGCTACATTAACGGAC
Unaligned ( gi|27 ): CGGTCCGTGGACGAGAATTCATATTTCATCGTAAAAGCAAAAGCACGTGGTCATCCTAGCCTACAGCATGTTTTAAGTCAAATTATTACGAATCCCATGTGTTTTACAAGTACAAGCTGTCATGTCTTTAAAAAAATCTTATTACGTTTTTTATTGTAATAAAACTTCAAAAGATTTATCCTTGTATACAA
Unaligned ( gi|29 ): ACGTGACAGTATGACTGGGGCTTTACGAAGTCCCTAGTTTAACAATTACGCGCTGTCATGTCTTGAAATATTCTTATTTCGTTTTTCTTTCATCTCAAATTATTGTTATAAAAAAGAAATTCAATATTAGAATATATTCGTCATTGACA
Unaligned ( gi|31 ): TATAATTATTGTATATTTATTTCGGTGTATCTTGGTTCATTTGGGCGAAGGTGGTGACAAGTGCGAAGAACGAGTCGTGTCCTTTCTCCAAAAAACAAAAATCAAGATACTCCGAAATGAACATTCAATACTTATTAATAT
Unaligned ( gi|33 ): GATTACGTGGCACATGAAAAAATATAATTGATCATGAGTAGGATTTGGACGAAGGGCGGGAACTCGTACTCGTCACCGCCTTTTTGGATAAGTCAAGATACACCTAAATAAATACACAATAGCTGTTACG
Unaligned ( gi|34 ): TTATTCGGTTTTTCTTTTATCTCAAATTATTGTAAAACAAAAAACTTCAAATGATCCATTCCTATATATAAGAGTTTGCTAGTCGCCGTTGACGGACCACGTTTTGTTACTCGTAAATGGCCATTCCGT
Unaligned ( gi|35 ): TACTACGAAGCCTATGTGTTTTACAAGTAGCGCTGCCATGTCTTAAAAAATCTTGTTAAAAGTTTTTATTGTAATAAATAATTATGTATATAAGATTTTACAATTCTTCATTGA
Unaligned ( gi|37 ): AACAGTTCTTGTATATTTATTTCGGTATACATGTATCTTGATTTATTTGGACAAAGTGTAAAACACGAGTCTCCGCTCTTTGTGCAAATAAAGCAAGATAC
Unaligned ( gi|38 ): GGCGGTGACGAGTGTGGAGCACGAGTCTCAACCCTTCGTCCGAATAAATCAAGATACACCGAAATACATATCAATAACTTACTTGTATCAAGGCCA
Unaligned ( gi|40 ): AGTAATAGTTATTGTATATATTTTTCGGTGTATCTTTTTTTATTTGGATGCAGGGCGGTGACGTGTGCGGAGCACAA
Unaligned ( gi|41 ): GAGGCTCGTGCTTCGCACTTGTCACCACTCTTCGTCCAAATAAATCAAGATACATAAATATACAGTAGCTATTACT
Unaligned ( gi|43 ): ACCGAAATAAATATTCAATAACTTACTTGTTTTAAAATAGGCCAATAGAAACTTGCTTACAAATATCATGAC
Unaligned ( gi|45 ): CGTCCAAATAAATCAAAATACACCGAAATAGATATATAACATAACTGTT
Unaligned ( gi|46 ): CGCACTTGTCACCGCCTTTCGTCCAAATAAATCAAGATACACCG
Unaligned ( gi|47 ): AAATAAATCACATTCTCATACTCCTCTGCCAACGATT
Unaligned ( gi|48 ): TTTATTTGGACGAAGGGCGGAGACTCGTGTGTC
Unaligned ( gi|49 ): ATAGGACGTTTTAAACATGGTACGTGCTTAATT
Unaligned ( gi|50 ): CGAAACGTGACGTGTGACTGGGGCTTTACAAA
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1 1 1 1 1 1 11 11 1 1 111111 11 111111 11111 111 11111111 33333333333333333333333333333333333 222222222 2222222222222222222 11111111111 11 11111111 11111111 222 11111 3333333333333 22222222222222222222 222222 2222222 333333 1111111 00000000000000000000000000000 22222222222222222222222222
lowQualScore : 3 0 0 55 66 0 3 5 66 2 2 2 5 0 2 0 11 8 8 88 1 1 5 0 66 777777 2 33 3 55 44 3 555 000000 44 3 6 3 1 99 2 888 55 7 2 2 7777 999 3 00000 0 333 1 3 3 44 1 44 0 3 3 11111111 2 66666666666666666666666666666666666 3 77777 111111111 3 8888888888888888888 3 555 3 3 3 77777 3 0 66666666666 3 888888 3 77777 88 1 44 44 44 3 33 2 2 33333333 2 666 3 00000000 3 1 0 55 444 4 55555 777 5 5 1 66 1 1111111111111 88888888888888888888 666666 9999999 333333 3 3 0000000 2 888888 33 555 77777777777777777777777777777 4444 333 4 6 77777777777777777777777777 4 11 2 2 2
lowQualScore : . . . .. .. . . . .. . . . . . . . .. . . .. . . . . .. ...... . .. . .. .. . ... ...... .. . . . . .. . ... .. . . . .... ... . ..... . ... . . . .. . .. . . . ........ . ................................... . ..... ......... . ................... . ... . . . ..... . . ........... . ...... . ..... .. . .. .. .. . .. . . ........ . ... . ........ . . . .. ... . ..... ... . . . .. . ............. .................... ...... ....... ...... . . ....... . ...... .. ... ............................. .... ... . . .......................... . .. . . .
lowQualScore : 2 0 0 00 55 0 2 5 55 5 5 5 0 0 5 8 44 0 0 00 4 4 7 0 11 777777 4 66 6 00 22 6 555 555555 66 1 7 3 2 22 5 888 00 3 5 6 7777 999 6 33333 1 000 2 6 6 66 8 66 1 3 1 22222222 9 22222222222222222222222222222222222 1 77777 222222222 3 2222222222222222222 3 888 3 3 3 88888 3 5 00000000000 1 222222 1 77777 00 6 66 99 66 1 44 9 9 99999999 9 333 1 22222222 1 8 5 55 444 4 66666 888 0 0 0 99 7 4444444444444 88888888888888888888 999999 0000000 444444 3 8 8888888 9 222222 99 000 44444444444444444444444444444 7777 999 4 7 99999999999999999999999999 4 77 2 4 9
consensus : GAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--TGCGATANCTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAATG--TCGGTGAGAGT-GGATG-TC--GGAACG--TCTGATCAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GC------AT-A-C----ATTTT-G-----TGTAAATTAAACTG--GGAGAC-GATAAC-ATGG-ATATCAACATGACC-GCG-G-G---AA---A-TA-G-T-TC-----G-TGAA-TTTTGACTGGGACCTTGCATATCT--A---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGATTCGA-TTNTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCAC--CCGCGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCGAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGNCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
Reference ( family-2591 ) : GAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--TGCGATANCTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAATG--TCGGTGAGAGT-GGATG-TC--GGAACG--TCTGATCAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GC------AT-A-C----ATTTT-G-----TGTAAATTAAACTG--GGAGAC-GATAAC-ATGG-ATATCAACATGACC-ACG-G-G---AA---A-TA-G-T-TC-----G-TGAA-TTTTGACTGGGACCTTGCATATCT--A---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGATTCGA-TTNTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCAC--CCGCGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCGAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGNCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|1 : AGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC--TGATTATTTAAA-AACTTGCTTTCCACCT--TCACCAATTAGAAAT-TGCAATAACTGTCATATGACCCGTG-TGG--TTC-TT-GCGTTA-----------TACC--TCTCCCAATTGAAAAT-TCAAGGTTTTTGGTCAACTTTGATCACTCGGG--TATCATACCACTTCCCGTC----AATCAA-TGTTTATCTCGCACTAC----CCGCCCAAATGCTTCCGTGAGAGT-GGATG-TCTGGGATCAGTTTTAATTTGGGCACCTAAACTA-TA-TG--------ATTGAC------CC--------TG-----G----G------GATTT-TA-----TT---------TTATCACAACG-------------------CGTGCC---GATGCA-A-ATTGACG---AA-TTAC--GT------AT-A-T----ATTTTAG-----TGTTATTAAAACTG--GCAGACGGATAACAATGGAATATCAACATGACC-G-G-G-G---AA---A-TA-GTT-TT-----G-TGAATTTTTGACTGGGACATTGCATATTT--AAATTGCAA-T-----TTT---TA-TTCATGAATGATCACGAGGATTTGATTTATGATTGAAAATTGACGAATCGCACATTTTGTGAA-TTAAACTGGTCCAAGGGGGGAGGGGGGGGGACGGGAAATTTAAAAACCCCCTTTGGATACTAACTAAACAGTGACCACAACCGCGGGTCTAATAGTATGCAATCCCTGAATTTTGACCCTAGAC-------CT-T------TT--GAAATTGTCACG---CGGT-------------T--------------TTA----CACAGCACA---GTTTTA-AA---------------A----------ATAAT-ATGCAAATGGGAGTTCCGACCCACTGG-TGTATCTCCAGTTACTTGTA
gi|10 : TA-TTCAATAACTTAC-TAGTATCA--TGACCAATCAGAAA--TATGATATTTGTCATATGACAC--G-TGG--TTA-TT-GCGTAATT-TT------TAATATTACCCCAA-TGAAAAT-TCAAGG--ATTTGTCAG--GTGATCGCTTGGG--TATC-TTCCCCTTCCCACC----AAAC-A-CGTTCATCTCACACTGC----TCGCCCAAATG--CTAGTAAGGGT-GGATG-TC--AGAATG--TCTGATCAGGGCTCCAAAACTA-TA-TA--------A-TGAT------TAACACGATTTG-----G----GTCAGCAGTTTT-TA-----TCCCATGATTATTATTGCAA-G-------------------AATG-C---GATG-G-A-ATTGGTGTATAA-CCACAGGC------CT-A-TCTAGATTTT-G-----TG--AATTcacttttaacaaaggggaagaaaacagccacagcccatttaatacatt
gi|11 : caaTACGA-TACCTGT-CAGGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--T--------------ATGACCC--G-TGG--TTC-TT-GTGTGATT-TT------TAAC--TACTCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTCATCTCGCACT----------------------GTGAGAGT-GGATG-TC--GGATCG--TTTAATTTGGACACCTAATCTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-T-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GT------AT-A-T----ATTTT-G-----TGT-AATTAAACTG--GGAGAA-GATAAC-ATGA-ATATCAACATGACC-AGGTG-G---AA---A-TA-G-T-TCTAATAG-TGAA-TTTTGACTG---------ATACCT--A----GCA--------TTT---TATTTCATG-ATGATCATGTGGATTCGA-TTATGAT--GAAATTGACGAATCGCtttatatcggtgtatgttgatttatttggacgaatggtggagactcgtgcttcgtactcatgcacccttcgtccaaataaatcaagatatatacaacaacaatactattacta
gi|12 : c--------------T--------------TTA----CATACCATA---G-TTTACAA---------------ATACATGTAGTATAATTATGCAAATGATC-TTCCA-CC-ACTGA-TGTATCGCTAGTTA-TTGTA
gi|12 : gttgtatcatggtgcggatttttccctttatcaaaagtgCCAAATG---CAGTGAGAGT-GGATG-TC--AGAATG--TCTGATCAGGGCACCTAAACTA-CATTGCAATTTACA-TGAT------T---------TG-----G----GTCTA--GTTTT-TA-----TG---------TCATGGTGA-T-------------------CATA-CATGGATG-A-A-AT-----------TTA-----------ATAA-C----A-TTT-G-----TG-AAAATAAACTG--GGAGAT-GATAAC-ATGA-ATATTAACATGACC-ACG-G-T---GA---A-Ttgaattattgaacaccgctaggcatattcaaatactaaaccggatcgcaatctaagtcagactgaccggatcgcggctcttcttgattttcaaaacaaattcctctttaaatgtgtgaattcaccgtggtcatgttaatattcatgttatcatctcccagtttattttcacaaatgttattaaatttcatccatgtatgatcaccatgacataaaaactagacccaaatcatgtaaattgcaatgtagtttaggtgccctgatcagacattctgacatccactctcactgcatttgg
gi|13 : gttgtatcatggtgcggatttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaagatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgctaggcatattcaaatactaaaccggatcgcaatctaagtcagactgaccggatcgcggctcttcttgattttcaaaacaaattcctctttaaatgtgtga-T------TT--GGAATTGCCACG---CGG--------------TGTTCAATAATTCATTTA----CATACCATA---G-TTTACAA---------------ATACATGTAGTATAATTATGCAAATGATCGTTCCA-CC-ACTGA-TGTATCGCTAGTTA-TTGTA
gi|13 : tgttgtatcatggctgcggagttttccctttatcaaaagtgCCAAATG---CAGTGAGAGTTGGATG-TC--AGAATG--TCTGATCAGGGCACCTAAACTA-CA-T-----------TGGCAATTTACA--------TG-----AATTAG------GGTCT-AG-----TT---------TTAT------G-------------------CATG-C---GATC-ATACATGGATG---AAATTAT--GA------AT-AAC----ATTTT-G-----TGAAAAT-AAACTG--GGAGAT-GATAAC-ATGA-ATATTAACATGACC-ACG-GTG---AATTCA-CACA-T-TT-----G-TGAA-tacttctaaaaccggatcgcaatctaaagtcagactgaaccggatcgcggctcttcttgattttcacaaatgtgtgaattcaccgtggtcatgttaatattcatgttatcatctcccagtttattttcacaaaatgttattcataatttcatccatgtatgatcgcatgcataaaactagaccctaattcatgtaaattgccaatgtagtttaggtgccctgatcagacattctgacatccaactctcactgcatttgg
gi|14 : tgttgtatcatggctgcggagttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaacgatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgcgtggcaattccaaatacttctaaaaccggatcgcaatctaaagtcagactgaaccggatcgcggctcttcttgattATCA--TGACTAGTAAGGAA--TATAATATCTACAAT---------G-TGG--TTA-TT-TCGTGATTGTT------TAAT--TACAACGT-TGAAAA-------G--TTTTGTCAG--AGGATCACTTCGG--TATT-TTGCTTTTCTCATCTTGAAAGC------TTATCTCGCAGTAC----TAACCCGATTG--TCGGTACAAGT-GGATGCCC--AGAATG--TCTGATCAAAGCACCTCAAC-------A--------A-TGAA------CAC-------TG-----G-----------------TG-----TT---------TTA-CACAA-
gi|15 : tgataaaatcaattcatcataatcatcactgaataaaaggtgcaaactcaaa--------------T--------------TTA----CACAGCACA---G-TTTA-AATTTAAAAAACCCCCAA----------AAAGC-ATAAAAATTATTATTCCG-CCCACTGG-TGCATCCCTAGTTA-TTGTAacaataataagctattggatttttatatcggtgtatcttgatttatttggacaaaggacggagaatcgtgcttcgcactcgtcatcacccttcttccaaataaatcaagatactccgatacagatatacaaaaactgatact
gi|15 : ccatcatggccgtggtgtttttccctttataaaacgtgA-TG--------A-TAAT------TA--------TA-----A----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CATG-C---ATTG-A-A-ATTGA-----AA-TAAA--TC------AC-A-T----ATTTT-GTACAATGTAGA--AAAATGCAGGATAC---------TAG--TATCAACTTGGCC-GCG-G-GCCTAA---A-T----C-TC-----C-TGAA-TTTCGACTGGGACTTTACAAATCT--tatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcagatttgtaaagtcccagtcgaaattcaggagatttaggcccgcggccaagttgatactagtatcctgcatttttctacattgtacaaaatatgtgatttatttcaatttcaatgcatgcttgtgataaaataaaatccttataattatcattaaataaaaaacagtagaaatcgccaatgttcatagttgaggtgctcgtatcagacattctg
gi|15 : ccatcatggccgtggtgtttttccctttataaaacgtgtacaataactagggatgcaccagtgggcggaataataatttttatgctttttgggggttttttaaatttaaactgtgctgtgtaaatatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcC--AGAATG--TCTGATACGAGCACCTCAACT---------------A-TGAA------CAT-------TG-----G----C------GATTTCTACTGTTTT---------TTATtaaataaaaaacagtagaaatcgccaatgttcatagttgaggtgctcgtatcagacattctg
gi|17 : ccatcatggccgtggtgtttttccctttataaaacgtgtacaataactagggatgcaccagtgggcggaataataatttttatgctttttgggggttttttaaatttaaactgtgctgtgtaaatatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcagatttgtaaagtcccagtcgaaattcaggagatttaggcccgcggccaagttgatactagtatcctgcatttttctacattgtacaaaatatgtgatttatttcaatttcaatgcatgcttgtgataaaataaaatccttataattatcattaaAATCCATGA--TTCGA-TTTAGAC-------GTAT------TT--GAAATCATCATA---TGGAGTTCATTAACTTAT--------------TTA----CACATCACA---G-TTTACAA---------------A----------ATGAT-ATGCAAATGATAGTTTTC-CCCACTCC-TATATCTCC
gi|17 : atatatacatcaactagagatata-C---GGTG-A-T-ATTGA-----AA-TGAA--AC------AT-A-C----ATTTT-A-----CG-AAATTAACTTA--GGAGGT-GAAAGA-ATGG-ATATCGACATAACC-CTG-G-G---CC---T-TG-A-TGTC-----A-TGAA-TTTTGACTGCGAttcttgctttttaacacgttttcattttacatttgtgaattcgcagtcaaaattcatgacatcaaggcccagggttatgtcgatatccattctttcacctcctaagttaatttcgtaaaatgtatgtttcatttcaatatcaccga
gi|18 : atatatacatcaactagagatataggagatataggagtggggaaaactatcatttgcatatcattttgtaaactgtgatgtgtaaataagttaatgaactccatatgatgatttcaaatacgtctaaatcgaatcatggattttcttgctttttaacacgttttcattttacatttgtgaat-T------TT--GAAATTGTTATG---CGA--------------TGTTCAATAATTCATTTA----CACAGCACA---G-TTTT-AA---------------G----------ATGAT-ATGCAAATGATGGTTCCG-CCCTCTGG-TGTATCTCTAGTTA-TTGTa
gi|18 : ttttatatggatatggtggggtttttcctttgtcaaaagtggATCACACATTTTGTGAAATCAAACTG------------------GGAGA---------------------------ATCAAC------ATG----T--CCGCGAGCCT-AT--------ATTCGTGAATTTTGA-TTGGAAC-------CT-CACACAATCAAGAAAGAGCCACGATTCGG--------------T--------------TTA----GA-ACTACATGTA-TTTG-AA---------------A----------TTGTT-ATGCGAtacatgtagttctaaaccgaatcgtggctctttcttgattgtgtgaggttccaatcaaaattcacgaatataggctcgcggacatgttgattctcccagtttgatttcacaaaatgtgtgatg
gi|18 : ttttatatggatatggtggggtttttcctttgtcaaaagtggacaataactagagatacaccagagggcggaaccatcatttgcatatcatcttaaaactgtgctgtgtaaatgaattattgaacaC------AC-A-C----ATTTT-G-----TG-AAATCAAACTG--GGAGA----------------ATCAACATGTCC-GCG-A-G---CCT--A-TA---T-TC-----G-TGAA-TTTTGATTGGAACCTCACACAg
gi|19 : ttttatatggatatggtggggtttttcctttgtcaaaagtggacaataactagagatacaccagagggcggaaccatcatttgcatatcatcttaaaactgtgctgtgtaaatgaattattgaacatcgcataacaatttcaaatacatgtagttctaaaccgaatcgtggctctttcttgatTATGATCT--T-TAG--TTA-TT-GCAGGATT-TT------AAA-------------GAAAAT-TCATG----TTCGTCAG--GTGATCGCTTGGGTATATC-TTCCATTTGCCG-------------------CCTCGCACTACCCGGCCGCCCAAAGA--ACGGTGAGAGT-GGATG-TC--AGAATG--TCTGATTAGGGCACCTAAACTA-TA-TG--------A-TGAatg
gi|2 : tcaaatcatgtaaaAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC--TGATTATTTAAA-AACTTGCTTTCCACCT--TCACCAATTAGAAAT-TGCAATAACTGTCATATGACCCGTG-TGG--TTC-TT-GCGTTA-----------TACC--TCTCCCAATTGAAAAT-TCAAGGTTTTTGGTCAACTTTGATCACTCGGG--TATCATACCACTTCCCGTC----AATCAA-TGTTTATCTCGgggtctgactggccacgtttggacgaagggcggaaactcgtgcttttcactcgtcaccagctgtttacaagaagtcaggat
gi|20 : aataatagtttattgtatatttatttcggtgtatcgggattatttgaacgaagggcggtgacgagttgcggagcacgaaattctccgccctatcgcttccaaataaaatcaagactacaccgaaataaagttcaataaacttacttgttatcaagccaatagaaacttgctttatcatgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgacgatttcaccgatagcatgacaatcgcgggccgtggacgaggaatcacgttgggttcaccctacaacatgtttttgagtcaaatttactacgaaaggcccatgtgttttacaagtacgcactgccatgtcttaaaaatcttattcgtttttttattattgtaataaataattaaaggaactttaaaagattctatccttgtatataagcttttacaattcttcacttgacggacccacgtattgttgtttttcgaGGTCACGAGGATTTGA-TTTTGAT--GAAATTGACGAATCACACATTTTGTGAATTTAAACTGGTCCA-------------GAAGAC-----------------------GATACTAAC------ATGACCA------CGGGCCTA--------CAATTCATGAAT---------------------T-T------TT--GAAATTGTCACG---CGGTATTCAATAA----T--------------TTATTTCCACAGTTCA---G-TTTC-AA----------------------------AGT-ATGCAAATGATGGTTCCG-CCCACTGGTTGTA
gi|21 : CTCAC-TTGTATCA--TGACCAATTAAAAAAGTTTGATGTCTGTCATATGACCTT-G-TGGCTTTC-TT-GCGTGATT-TT------TAAT--TACCCCAA-T-AAAATATCAAGT--TTTTGTCAG--GTGATCGCTCcactttggacaaagggaaaacaccacagccatgatacaat
gi|26 : AC-----TTGGATACTAACTAAAC-ATGACCACA-CCGCGGGTCTAATAGTATGCAATCCCTGAATTTTGA-CCTAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---GTTTTA-AA---------------A----------ATAAT-ATGCAAATGGGAGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTAcaaatcaatatttatttcgctgtatcttgcggaatttagtgtttgcacccgagacaacacgtcgtctacttaaattaagatacaccgaaataaatatacaataactaatact
gi|28 : ATTTTGA-CCGAGAC-------CT-T------GT--GAAATTGCCACG---CGG--------------TATTCAATGATTGATTTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGCCGTTCCG-CCCACCGG-TGTATCTCCAGTTA-TTGTAcacttttaacaaagggaaaacaccacagccataatacatt
gi|3 : cctGAGAGAAT---CGTAA-GAACCATTCAATT-AAT-CGATGAG-TAACAAGATAGAACGAAT--CA-TGAAAAT--CCA-AA---TTACCATAATC--TACG-ATACCTGTCCATGTGA-CAGTTCTCTGCAGTGA-TA-TT--A-AACTTGC--TCCACCAATTG--CAATTAG-AA--TGGCATAA-TGTCATAATACCC--GTTGG--TTTATTAGCTTG-TT-TT------T-AC--TA--CCAA-TGAAGAT-T--AAG--TTTGGTCAA--TTAACTA-TCAGG--TA-C-TA-CACTTCCCG-C----AAGC-ATTGTTTATTTCACcactattaacaaaggtaaaacaccacagccatgatacac
gi|30 : tatagttattgtatttttatttcagtgtatatttaattcattttggatcagagggcggtgacgagtgcggagcacggttctcgccttcgtcaaaataaatcagtacacggaataaatattaaatcttacttgtatccaagccaatagaaggtgctttttcatgaagaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaaccccgaagagtcacgatacatgacatgcggcggacgagacatcgtgaaaagcaaatgcaaagtggtcacctacaaatgtcatttgagtcaaatactacgaagtccatggttttacaagtagcgctcatgtctttaaaaatcttattacgtttattttattgtaatggataatttaagattttaaaagattttatacccttgtataagatttgacaattttttcattgacggacacgggtattattggttttcGAATTTTGA-CCTAAAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|32 : cATTTTGA-CCGAGAC-------CT-T------TT--GAACGTGTCACG---CGG--------------TATTCAATTATTTATTTA----GACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTAcacttttaacaaagggaaaacaccacagccatgatacaat
gi|36 : c--------------T--------------TTA----CACGGCACA---G-TTTA-AA---------------A-----------TAAT-ATGCAAATGGGCGTTCAA-CCCACTGG-TGTATCTCacaaagggaaa
gi|39 : cacgctgtattcaatgatttaAACTGTCATATGACCC--G-TGG--TTC-GT-GCGTGATT-TTTACATGTAAC--TACCCCAA-TGAAAAT-TC-AGG--ATTGGTCAG--TTGATCACTaaaggtaaaacaccacagccatgataaaa
gi|4 : GAGAGAATTCTCGTAAAGAACCATTCAATCTAATC-GATGAGT-AACAAGATA-A-CCAAT-GCAT-GAAAATCCC-ACAA-ACTTA-CATAATCCT-ACGA-TACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAA---TGCAATAACTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAC--TTAATCACTCAGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATTTCGCACTAC----CCGCCCAAATG--TCGGTGAGATT-GGATG-TT--GGATCG--TTTAATTTGGGCACCTAAACTA-TA-TG--------A-TGAC------CC--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GT------AT-A-T----ATTTT-G-----TGTAAATTATACTG--GGAGAC-GATAAC-ATGG-ATATCAACATGACC--CA-G-G---AA---A-TA-G-T-TT-----G-TGAA-TGTTGACTGGGACCTTGCATATCT--ACG-TGCAA-T-----TTT---TATTTGATG-ATGATCACGAGGATTTGA-TTATGAT--GAAATTGACGAATCACTCATTTTGTGATTTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGGTACTGAC------ATAACCACG-CCGCGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCTAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|42 : C-ATGG-ATATCAATGTGACC-ACG-G-GG--AA---A-TA-G-T-TC-----G-TGAA-TTTTAACTGGGACCTTGC----------------A-T-----TTT---TATTTCATG-ATG
gi|44 : G-CCCACTAG-TGTAACTCGAGCTA-TTGTA
gi|5 : --------------T--------------CTA----CACAGCACA---A-TTTA-AA---------------A----------TTAAT-ATGCAAATGATTATTCTA-TCTACTGA-TGTATTTCTCTTCA-TTGTAcacttttaacaaagggaaaaaaaccacagccatgatacaaa
gi|5 : gtattatgactgttgtttttgtccctttatcaaaattgATAA-TCAAT-AGCTTAC-TTGTAACT--TGGCCAAATAGAAA--GATGATATCTGTAATATGGCCT--G-TGG--CTA-TT-GTGGGA---TT------T--C--TA------------AT-TTTATG--TTT---------CGA------AAG--TATT-T-CC-CTTTTCGCT----AAGC-A-TGTATTTATCGCACTAC----TCCCCCAAATA--TCGGTGAGAGT-GCACG-TC--AGAATG--TGTGACCAGGACACCTAAACTAGTA-CG--------A-TGGTTTA---CA--------TGATTTCG----GTCTACAGTTTT-TA-----TTCCATAA---TGATCACGA-GGATTTGATTTGATGAAAAACATG-A---GATG-G-G-ATTAATG---AA-T--------------C-A-C----ATTTT-G-----TG-AAATTAAACTG--GGAGAT-AATAAA-ATGG-ATATTCACA-GGCA-ACG-G-GCCTAG---A-T----T-TT-----A-AGAA-TTTTGACTAG-----TGCTTCTCC--AT--TTCAA-TAAGGATTT---TATTTtaaattattcaagattgtatgacaatcacccacatacttcttttaagcgagccgcggctcttctttatttaaaaaataaaatccttattgaaatggagaagcactagtcaaaattcttaaaatctaggcccgttgcctgtgaatatccattttattatctcccagtttaatttcacaaaatgtgattcattaatcccatctcatgtttttcatcaaatcaaatcctcgtgatcattatggaataaaaactgtagaccgaaatcatgtaaaccatcgtactagtttaggtgtcctggtcacacattctgacgtgcactctcaccgatatttgggggagtagtgcgataaatacatgcttagcgaaaagggaaatactttcgaaacataaaattagaaatcccacaatagccacaggccatattacagatatcatctttctatttggccaagttacaagtaagctattgattatttatttcggtgtgtcttgatttatttggacgaagaacggagactcgtgtttcgcactctctaccactttttgtccaataaaaccaagatacaccgaaataaataatagtaaga
gi|6 : gtattatgactgttgtttttgtccctttatcaaaattgtacaatgaagagaaatacatcagtagatagaataatcatttgcatattaattttaaattgtgctgtgtagataaattattcaagattgtatgacaatcacccacatacttcttttaagcgagccgcggctcttctttatttaaaG--TTGATCACTCGGG--TATC-TACCATTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAACG--TCGGTGAGAGT-GGATA-TC--GGATCG--TTTAATTAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TA-----G----G------AATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACA---AA-TTAC--GT------AT-A-T----ATTTT-G-----TGT-AATTAAACTG--ATGGAC-GATAAC-ATGG-ATATTATCATGACCAAGG-G-G---AA---A-TA-G-T-TA-----G-TGAA-TTTTGACTGTGACCCTGCATATTTAAA---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGAGTCGA-TTATGAT--GAAATTGACGAATTGCACATTTTGTGAATTTAAACTGGTCCT-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCA------CGGGCC------TATGCAATTGATGAACTTTGA-CTAAGAC-------CT-T------TT--GAAATTGTCACG---CGGTATTCAATGATTTAT--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCTACTGG-TGTATCTCCAGTTA-TTGTAttatttcggtgtgtcttgatttatttggacgaagaacggagactcgtgtttcgcactctctaccactttttgtccaataaaaccaagatacaccgaaataaataatagtaaga
gi|7 : C--TACCCCAA-TGGAAAT-TCAAGG--TTTGGTCAG--TTGATCAATCGGG--TAAT-TACCACTTCCCGTC----AAGC-G-TGTTTATCTCCCATT----------------------GTGAGAGT-GGATG-TA--GGATCG--TTTAATTAGGGCATCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TC---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GTTATCGTAT-A-T----ATTTT-G-----TGTAA-TTAAAATG--GAAGAC-GATAAC-ATGG-ATATCAACATGACC-ACG-G-G---AA---A-TA-G-T-TA-----A-TGAA-TTTTGACTGGGACCTTGCATAGTT--AAA-TGCAA-T-----TTT---AATTTCATG-ATGATCATGAGGATTCTA-TTTTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTAGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATAACC-C--C----GAACTA-----ATGCAATTGATGAATTTTGA-CCG---C-------CT-T------TT--AAAATTGTCACG---CGGTATTCAATGATTTAT--------------TTA----CACAGCACA---G-TTTA-GA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCcactttttacaaagggaaagcaccacagccatgatacaa
gi|9 : atTGGTCACGAGGATTTGA-TTTTGAT--GAAATTGACGAATCACACAT
gi|9 : -TGAC------CA--------CG-----A----G------GATCT-TA-----TT---------TTATCACAA-G-------------------CATG-C---GGTG-A-A-ATT-ACG-------TAC--AC------A--A-C----A------------GT--------------GAGAC-GATAA--ATGG-ATGTCAAAACGAC--GCG-G-G---AA---AACA-G-T-TT-----GGTGAA-TTTTGACTGG----------ACCT--A---TGCAA-TA----TTT---TATGCCACG-cgaggatcttattttatcacaagcatgcggtgaaattacgtacacaacagtgagacgataaatggatgtcaaaacgacgcgggaaaacagtttggtgaattttgactggacctatgcaatattttatgccacgggggaaagaattttgactgggaccttgcatatttatgcaggttttatatatttcatgatgatcacgaagatttgattttgatgaaattgacgaatcacacattttgtgaatttaaactggtccaggagacaataacctggatactaacatgaccaccggtctatacaattgatgaattttgacggagacatttataattttgaaattgtcacgcggtattcaataatttatttacacagcacagtttaaaaataatatgcaaatggtggttccgcctactggtgcatctccagttattgtacactttt
gi|9 : atgtgtgattcgtcaatttcatcaaaatcaaatcctcgATG-CC-ACG-G-G---GG---A-AA-G--------------AA-TTTTGACTGGGACCTTGCATATTT--A---TGCAGGT-----TTTATATATTTCATG-ATGATCACGAAGATTTGA-TTTTGAT--GAAATTGACGAATCACACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACA----AT-----AAC-----CTGGATACTAAC------ATGACCAC--C----GGTC------TATACAATTGATGAATTTTGA-CGGAGACATTTATAAT-T------TT--GAAATTGTCACG---CGGTATTCAATAATTTAT--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGTGGTTCCG-CCTACTGG-TGCATCTCCAGTTA-TTGTAggggaaagaattttgactgggaccttgcatatttatgcaggttttatatatttcatgatgatcacgaagatttgattttgatgaaattgacgaatcacacattttgtgaatttaaactggtccaggagacaataacctggatactaacatgaccaccggtctatacaattgatgaattttgacggagacatttataattttgaaattgtcacgcggtattcaataatttatttacacagcacagtttaaaaataatatgcaaatggtggttccgcctactggtgcatctccagttattgtacactttt
23 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AGTAATAGTTATTGTATATTTATTTCGGTGTATCTCGATTTATTTGGACGAAGGGCGGTGACGAGTGCGGAGCACGAGTTTCCGCTCTTCGTCCAAATAAATCAAGATACTACGAAATAAATATTCAATAACTTACTTGTATCAAGGCCATTAGAAACTTGTTTTTATCATGACAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGGGCCGTGGACGAGAATTTATATTTTGTCATGAACGCAAATGCACGTGGTCACCCTACAACATGTTTTGAGTCAAAGTATTACGAAGTCCATGTGTTTTACAAGTACTTGCCATCTTATTCCGTTTTTTTATGTAATAAATAATTAAATACCTTTAAAAGATTTATCCTTGTATATAAGATTTTGC
Unaligned ( gi|16 ): CAAATAAATCAAGATGCACCGAAATAAAAATTCAATAACTTACTTGTATCCAGGCCAATAAAAACTTGTTTGTATCTTGACAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCGGGCCGTGGGCGAGAATTTATATTTTGTCGTAAAAGCAAAAGCACGTGGTCACCCTACAGCATGTTTTGAGAAGTATTTCGAAGCCCATGTGTTTTACAAGTAAGCGCTGTCATATCATGTATTAAAAAAAATCTTATTCCATTTTTTATTGTAAAAAAAAAAACTTA
Unaligned ( gi|22 ): TTTTGTCGTGTAAGGAACAACACGTGGTCATCTTACAGCATGATTGCTAAGTCAGTGTGTTTTACAATTACTCGCTGCTATATGTCTAACTCTTATTCCGTTTTTCTTTTCTCTCAAATTATTGTTCTAAAAAGAAGAACTTCAGATGTTTGAGTTGTCTAGTCGCCATTGACGGACCACGTGCTATTGTTTACGAATGAATTCTCTTAAACAACCATTCAATGCGAT
Unaligned ( gi|23 ): GCCGTTTACCAAGGAATTTCACTAGTCTTGTTCGTGTAGCAACCACACATGGTCACCTCAACGTTTTTGAGTAAAATTAGGTATAGAAGTTCTGTATTTTACATACGGGCACTGCATGCATTAAAAAAAGTCTTATTCCATTTTTTCTTTTGTCTAGAATTCTGTAATAAGAAAAACGACTCAGTCCATCCTTGGTATCATAAGATTTACTACCTTTACTTG
Unaligned ( gi|24 ): GTACAGTGCGCATTTTATCATGTCTTTAAAAAGTCTTATTCCATTTTTCTTTTATTTCAGATAGTTGTAATAGAATAAAGAACATTAAATTATTCATTCCTGTATTTAAGATTTTACTATTTTAGTTTTAAGATTTTACTATTTTAGTTTACTAGTCGTCATTGACGGACCACGTGTTGTTGTTTACGTTTGAATTCACCATCACTCATTCCGATGA
Unaligned ( gi|25 ): CCTGGCCGTGGAGGAGAATCTATATTTTGTTGTAAAAAGCAAAAACACTTGGCCAATCTACAGCATGTTTTGAGTCAAATTATTACGAAGCCCATGTGTTTTACAAGCATGCGCTGCCATGTCTTAAAATTTTTATTGTAATAAATAAAGAACTTCAAAAGATTTATCCTTGTATATAAGATTTTACAATGCTACATTAACGGAC
Unaligned ( gi|27 ): CGGTCCGTGGACGAGAATTCATATTTCATCGTAAAAGCAAAAGCACGTGGTCATCCTAGCCTACAGCATGTTTTAAGTCAAATTATTACGAATCCCATGTGTTTTACAAGTACAAGCTGTCATGTCTTTAAAAAAATCTTATTACGTTTTTTATTGTAATAAAACTTCAAAAGATTTATCCTTGTATACAA
Unaligned ( gi|29 ): ACGTGACAGTATGACTGGGGCTTTACGAAGTCCCTAGTTTAACAATTACGCGCTGTCATGTCTTGAAATATTCTTATTTCGTTTTTCTTTCATCTCAAATTATTGTTATAAAAAAGAAATTCAATATTAGAATATATTCGTCATTGACA
Unaligned ( gi|31 ): TATAATTATTGTATATTTATTTCGGTGTATCTTGGTTCATTTGGGCGAAGGTGGTGACAAGTGCGAAGAACGAGTCGTGTCCTTTCTCCAAAAAACAAAAATCAAGATACTCCGAAATGAACATTCAATACTTATTAATAT
Unaligned ( gi|33 ): GATTACGTGGCACATGAAAAAATATAATTGATCATGAGTAGGATTTGGACGAAGGGCGGGAACTCGTACTCGTCACCGCCTTTTTGGATAAGTCAAGATACACCTAAATAAATACACAATAGCTGTTACG
Unaligned ( gi|34 ): TTATTCGGTTTTTCTTTTATCTCAAATTATTGTAAAACAAAAAACTTCAAATGATCCATTCCTATATATAAGAGTTTGCTAGTCGCCGTTGACGGACCACGTTTTGTTACTCGTAAATGGCCATTCCGT
Unaligned ( gi|35 ): TACTACGAAGCCTATGTGTTTTACAAGTAGCGCTGCCATGTCTTAAAAAATCTTGTTAAAAGTTTTTATTGTAATAAATAATTATGTATATAAGATTTTACAATTCTTCATTGA
Unaligned ( gi|37 ): AACAGTTCTTGTATATTTATTTCGGTATACATGTATCTTGATTTATTTGGACAAAGTGTAAAACACGAGTCTCCGCTCTTTGTGCAAATAAAGCAAGATAC
Unaligned ( gi|38 ): GGCGGTGACGAGTGTGGAGCACGAGTCTCAACCCTTCGTCCGAATAAATCAAGATACACCGAAATACATATCAATAACTTACTTGTATCAAGGCCA
Unaligned ( gi|40 ): AGTAATAGTTATTGTATATATTTTTCGGTGTATCTTTTTTTATTTGGATGCAGGGCGGTGACGTGTGCGGAGCACAA
Unaligned ( gi|41 ): GAGGCTCGTGCTTCGCACTTGTCACCACTCTTCGTCCAAATAAATCAAGATACATAAATATACAGTAGCTATTACT
Unaligned ( gi|43 ): ACCGAAATAAATATTCAATAACTTACTTGTTTTAAAATAGGCCAATAGAAACTTGCTTACAAATATCATGAC
Unaligned ( gi|45 ): CGTCCAAATAAATCAAAATACACCGAAATAGATATATAACATAACTGTT
Unaligned ( gi|46 ): CGCACTTGTCACCGCCTTTCGTCCAAATAAATCAAGATACACCG
Unaligned ( gi|47 ): AAATAAATCACATTCTCATACTCCTCTGCCAACGATT
Unaligned ( gi|48 ): TTTATTTGGACGAAGGGCGGAGACTCGTGTGTC
Unaligned ( gi|49 ): ATAGGACGTTTTAAACATGGTACGTGCTTAATT
Unaligned ( gi|50 ): CGAAACGTGACGTGTGACTGGGGCTTTACAAA
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1 1 1 1 1 1 11 11 1 1 111111 11 111111 11111 111 11111111 33333333333333333333333333333333333 222222222 2222222222222222222 11111111111 11 11111111111111111111111111 222 11111 3333333333333 22222222222222222222 222222 2222222 333333 1111111 00000000000000000000000000000 22222222222222222222222222
lowQualScore : 3 0 0 55 66 0 3 5 66 2 2 2 5 0 2 0 11 8 8 88 1 1 5 0 66 777777 2 33 3 55 44 3 555 000000 44 3 6 3 1 99 2 888 55 7 2 2 7777 999 3 00000 0 333 1 3 3 44 1 44 0 3 3 11111111 2 66666666666666666666666666666666666 3 77777 111111111 3 8888888888888888888 3 555 3 3 3 77777 3 0 66666666666 3 888888 3 77777 88 1 44 44 44 3 8888 2 2 44444444444444444444444444 3 1 0 55 444 4 55555 777 5 5 1 66 1 1111111111111 88888888888888888888 666666 9999999 333333 3 3 0000000 2 888888 33 555 77777777777777777777777777777 4444 333 4 6 77777777777777777777777777 4 11 2 2 2
lowQualScore : . . . .. .. . . . .. . . . . . . . .. . . .. . . . . .. ...... . .. . .. .. . ... ...... .. . . . . .. . ... .. . . . .... ... . ..... . ... . . . .. . .. . . . ........ . ................................... . ..... ......... . ................... . ... . . . ..... . . ........... . ...... . ..... .. . .. .. .. . .... . . .......................... . . . .. ... . ..... ... . . . .. . ............. .................... ...... ....... ...... . . ....... . ...... .. ... ............................. .... ... . . .......................... . .. . . .
lowQualScore : 2 0 0 00 55 0 2 5 55 5 5 5 0 0 5 8 44 0 0 00 4 4 7 0 11 777777 4 66 6 00 22 6 555 555555 66 1 7 3 2 22 5 888 00 3 5 6 7777 999 6 33333 1 000 2 6 6 66 8 66 1 3 1 22222222 9 22222222222222222222222222222222222 1 77777 222222222 3 2222222222222222222 3 888 3 3 3 88888 3 5 00000000000 1 222222 1 77777 00 6 66 99 66 1 0000 9 9 00000000000000000000000000 1 8 5 55 444 4 66666 888 0 0 0 99 7 4444444444444 88888888888888888888 999999 0000000 444444 3 8 8888888 9 222222 99 000 44444444444444444444444444444 7777 999 4 7 99999999999999999999999999 4 77 2 4 9
consensus : GAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--TGCGATANCTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAATG--TCGGTGAGAGT-GGATG-TC--GGAACG--TCTGATCAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GC------AT-A-C----ATTTT-G-----TGTAAATTAAACTG--GGAGAC-GATAAC-ATGG-ATATCAACATGACC--GCG-G-G---AA---A-TA-G-T-TC-----G-TGAA-TTTTGACTGGGACCTTGCATATCT--A---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGATTCGA-TTNTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCAC--CCGCGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCGAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGNCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
Reference ( family-2591 ) : GAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--TGCGATANCTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAATG--TCGGTGAGAGT-GGATG-TC--GGAACG--TCTGATCAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GC------AT-A-C----ATTTT-G-----TGTAAATTAAACTG--GGAGAC-GATAAC-ATGG-ATATCAACATGACC--GCG-G-G---AA---A-TA-G-T-TC-----G-TGAA-TTTTGACTGGGACCTTGCATATCT--A---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGATTCGA-TTNTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCAC--CCGCGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCGAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGNCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|1 : AGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC--TGATTATTTAAA-AACTTGCTTTCCACCT--TCACCAATTAGAAAT-TGCAATAACTGTCATATGACCCGTG-TGG--TTC-TT-GCGTTA-----------TACC--TCTCCCAATTGAAAAT-TCAAGGTTTTTGGTCAACTTTGATCACTCGGG--TATCATACCACTTCCCGTC----AATCAA-TGTTTATCTCGCACTAC----CCGCCCAAATGCTTCCGTGAGAGT-GGATG-TCTGGGATCAGTTTTAATTTGGGCACCTAAACTA-TA-TG--------ATTGAC------CC--------TG-----G----G------GATTT-TA-----TT---------TTATCACAACG-------------------CGTGCC---GATGCA-A-ATTGACG---AA-TTAC--GT------AT-A-T----ATTTTAG-----TGTTATTAAAACTG--GCAGACGGATAACAATGGAATATCAACATGACC--G-G-G-G---AA---A-TA-GTT-TT-----G-TGAATTTTTGACTGGGACATTGCATATTT--AAATTGCAA-T-----TTT---TA-TTCATGAATGATCACGAGGATTTGATTTATGATTGAAAATTGACGAATCGCACATTTTGTGAA-TTAAACTGGTCCAAGGGGGGAGGGGGGGGGACGGGAAATTTAAAAACCCCCTTTGGATACTAACTAAACAGTGACCACAACCGCGGGTCTAATAGTATGCAATCCCTGAATTTTGACCCTAGAC-------CT-T------TT--GAAATTGTCACG---CGGT-------------T--------------TTA----CACAGCACA---GTTTTA-AA---------------A----------ATAAT-ATGCAAATGGGAGTTCCGACCCACTGG-TGTATCTCCAGTTACTTGTA
gi|10 : TA-TTCAATAACTTAC-TAGTATCA--TGACCAATCAGAAA--TATGATATTTGTCATATGACAC--G-TGG--TTA-TT-GCGTAATT-TT------TAATATTACCCCAA-TGAAAAT-TCAAGG--ATTTGTCAG--GTGATCGCTTGGG--TATC-TTCCCCTTCCCACC----AAAC-A-CGTTCATCTCACACTGC----TCGCCCAAATG--CTAGTAAGGGT-GGATG-TC--AGAATG--TCTGATCAGGGCTCCAAAACTA-TA-TA--------A-TGAT------TAACACGATTTG-----G----GTCAGCAGTTTT-TA-----TCCCATGATTATTATTGCAA-G-------------------AATG-C---GATG-G-A-ATTGGTGTATAA-CCACAGGC------CT-A-TCTAGATTTT-G-----TG--AATTcacttttaacaaaggggaagaaaacagccacagcccatttaatacatt
gi|11 : caaTACGA-TACCTGT-CAGGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--T--------------ATGACCC--G-TGG--TTC-TT-GTGTGATT-TT------TAAC--TACTCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTCATCTCGCACT----------------------GTGAGAGT-GGATG-TC--GGATCG--TTTAATTTGGACACCTAATCTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-T-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GT------AT-A-T----ATTTT-G-----TGT-AATTAAACTG--GGAGAA-GATAAC-ATGA-ATATCAACATGACC--AGGTG-G---AA---A-TA-G-T-TCTAATAG-TGAA-TTTTGACTG---------ATACCT--A----GCA--------TTT---TATTTCATG-ATGATCATGTGGATTCGA-TTATGAT--GAAATTGACGAATCGCtttatatcggtgtatgttgatttatttggacgaatggtggagactcgtgcttcgtactcatgcacccttcgtccaaataaatcaagatatatacaacaacaatactattacta
gi|12 : c--------------T--------------TTA----CATACCATA---G-TTTACAA---------------ATACATGTAGTATAATTATGCAAATGATC-TTCCA-CC-ACTGA-TGTATCGCTAGTTA-TTGTA
gi|12 : gttgtatcatggtgcggatttttccctttatcaaaagtgCCAAATG---CAGTGAGAGT-GGATG-TC--AGAATG--TCTGATCAGGGCACCTAAACTA-CATTGCAATTTACA-TGAT------T---------TG-----G----GTCTA--GTTTT-TA-----TG---------TCATGGTGA-T-------------------CATA-CATGGATG-A-A-AT-----------TTA-----------ATAA-C----A-TTT-G-----TG-AAAATAAACTG--GGAGAT-GATAAC-ATGA-ATATTAACATGACC--ACG-G-T---GA---A-Ttgaattattgaacaccgctaggcatattcaaatactaaaccggatcgcaatctaagtcagactgaccggatcgcggctcttcttgattttcaaaacaaattcctctttaaatgtgtgaattcaccgtggtcatgttaatattcatgttatcatctcccagtttattttcacaaatgttattaaatttcatccatgtatgatcaccatgacataaaaactagacccaaatcatgtaaattgcaatgtagtttaggtgccctgatcagacattctgacatccactctcactgcatttgg
gi|13 : gttgtatcatggtgcggatttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaagatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgctaggcatattcaaatactaaaccggatcgcaatctaagtcagactgaccggatcgcggctcttcttgattttcaaaacaaattcctctttaaatgtgtga-T------TT--GGAATTGCCACG---CGG--------------TGTTCAATAATTCATTTA----CATACCATA---G-TTTACAA---------------ATACATGTAGTATAATTATGCAAATGATCGTTCCA-CC-ACTGA-TGTATCGCTAGTTA-TTGTA
gi|13 : tgttgtatcatggctgcggagttttccctttatcaaaagtgCCAAATG---CAGTGAGAGTTGGATG-TC--AGAATG--TCTGATCAGGGCACCTAAACTA-CA-T-----------TGGCAATTTACA--------TG-----AATTAG------GGTCT-AG-----TT---------TTAT------G-------------------CATG-C---GATC-ATACATGGATG---AAATTAT--GA------AT-AAC----ATTTT-G-----TGAAAAT-AAACTG--GGAGAT-GATAAC-ATGA-ATATTAACATGACC--ACG-GTG---AATTCA-CACA-T-TT-----G-TGAA-tacttctaaaaccggatcgcaatctaaagtcagactgaaccggatcgcggctcttcttgattttcacaaatgtgtgaattcaccgtggtcatgttaatattcatgttatcatctcccagtttattttcacaaaatgttattcataatttcatccatgtatgatcgcatgcataaaactagaccctaattcatgtaaattgccaatgtagtttaggtgccctgatcagacattctgacatccaactctcactgcatttgg
gi|14 : tgttgtatcatggctgcggagttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaacgatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgcgtggcaattccaaatacttctaaaaccggatcgcaatctaaagtcagactgaaccggatcgcggctcttcttgattATCA--TGACTAGTAAGGAA--TATAATATCTACAAT---------G-TGG--TTA-TT-TCGTGATTGTT------TAAT--TACAACGT-TGAAAA-------G--TTTTGTCAG--AGGATCACTTCGG--TATT-TTGCTTTTCTCATCTTGAAAGC------TTATCTCGCAGTAC----TAACCCGATTG--TCGGTACAAGT-GGATGCCC--AGAATG--TCTGATCAAAGCACCTCAAC-------A--------A-TGAA------CAC-------TG-----G-----------------TG-----TT---------TTA-CACAA-
gi|15 : tgataaaatcaattcatcataatcatcactgaataaaaggtgcaaactcaaa--------------T--------------TTA----CACAGCACA---G-TTTA-AATTTAAAAAACCCCCAA----------AAAGC-ATAAAAATTATTATTCCG-CCCACTGG-TGCATCCCTAGTTA-TTGTAacaataataagctattggatttttatatcggtgtatcttgatttatttggacaaaggacggagaatcgtgcttcgcactcgtcatcacccttcttccaaataaatcaagatactccgatacagatatacaaaaactgatact
gi|15 : ccatcatggccgtggtgtttttccctttataaaacgtgA-TG--------A-TAAT------TA--------TA-----A----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CATG-C---ATTG-A-A-ATTGA-----AA-TAAA--TC------AC-A-T----ATTTT-GTACAATGTAGA--AAAATGCAGGATAC---------TAG--TATCAACTTGGCC--GCG-G-GCCTAA---A-T----C-TC-----C-TGAA-TTTCGACTGGGACTTTACAAATCT--tatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcagatttgtaaagtcccagtcgaaattcaggagatttaggcccgcggccaagttgatactagtatcctgcatttttctacattgtacaaaatatgtgatttatttcaatttcaatgcatgcttgtgataaaataaaatccttataattatcattaaataaaaaacagtagaaatcgccaatgttcatagttgaggtgctcgtatcagacattctg
gi|15 : ccatcatggccgtggtgtttttccctttataaaacgtgtacaataactagggatgcaccagtgggcggaataataatttttatgctttttgggggttttttaaatttaaactgtgctgtgtaaatatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcC--AGAATG--TCTGATACGAGCACCTCAACT---------------A-TGAA------CAT-------TG-----G----C------GATTTCTACTGTTTT---------TTATtaaataaaaaacagtagaaatcgccaatgttcatagttgaggtgctcgtatcagacattctg
gi|17 : ccatcatggccgtggtgtttttccctttataaaacgtgtacaataactagggatgcaccagtgggcggaataataatttttatgctttttgggggttttttaaatttaaactgtgctgtgtaaatatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcagatttgtaaagtcccagtcgaaattcaggagatttaggcccgcggccaagttgatactagtatcctgcatttttctacattgtacaaaatatgtgatttatttcaatttcaatgcatgcttgtgataaaataaaatccttataattatcattaaAATCCATGA--TTCGA-TTTAGAC-------GTAT------TT--GAAATCATCATA---TGGAGTTCATTAACTTAT--------------TTA----CACATCACA---G-TTTACAA---------------A----------ATGAT-ATGCAAATGATAGTTTTC-CCCACTCC-TATATCTCC
gi|17 : atatatacatcaactagagatata-C---GGTG-A-T-ATTGA-----AA-TGAA--AC------AT-A-C----ATTTT-A-----CG-AAATTAACTTA--GGAGGT-GAAAGA-ATGG-ATATCGACATAACC--CTG-G-G---CC---T-TG-A-TGTC-----A-TGAA-TTTTGACTGCGAttcttgctttttaacacgttttcattttacatttgtgaattcgcagtcaaaattcatgacatcaaggcccagggttatgtcgatatccattctttcacctcctaagttaatttcgtaaaatgtatgtttcatttcaatatcaccga
gi|18 : atatatacatcaactagagatataggagatataggagtggggaaaactatcatttgcatatcattttgtaaactgtgatgtgtaaataagttaatgaactccatatgatgatttcaaatacgtctaaatcgaatcatggattttcttgctttttaacacgttttcattttacatttgtgaat-T------TT--GAAATTGTTATG---CGA--------------TGTTCAATAATTCATTTA----CACAGCACA---G-TTTT-AA---------------G----------ATGAT-ATGCAAATGATGGTTCCG-CCCTCTGG-TGTATCTCTAGTTA-TTGTa
gi|18 : ttttatatggatatggtggggtttttcctttgtcaaaagtggATCACACATTTTGTGAAATCAAACTG------------------GGAGA---------------------------ATCAAC------ATG----T--CCGCGAGCCT-AT--------ATTCGTGAATTTTGA-TTGGAAC-------CT-CACACAATCAAGAAAGAGCCACGATTCGG--------------T--------------TTA----GA-ACTACATGTA-TTTG-AA---------------A----------TTGTT-ATGCGAtacatgtagttctaaaccgaatcgtggctctttcttgattgtgtgaggttccaatcaaaattcacgaatataggctcgcggacatgttgattctcccagtttgatttcacaaaatgtgtgatg
gi|18 : ttttatatggatatggtggggtttttcctttgtcaaaagtggacaataactagagatacaccagagggcggaaccatcatttgcatatcatcttaaaactgtgctgtgtaaatgaattattgaacaC------AC-A-C----ATTTT-G-----TG-AAATCAAACTG--GGAGA----------------ATCAACATGTCC--GCG-A-G---CCT--A-TA---T-TC-----G-TGAA-TTTTGATTGGAACCTCACACAg
gi|19 : ttttatatggatatggtggggtttttcctttgtcaaaagtggacaataactagagatacaccagagggcggaaccatcatttgcatatcatcttaaaactgtgctgtgtaaatgaattattgaacatcgcataacaatttcaaatacatgtagttctaaaccgaatcgtggctctttcttgatTATGATCT--T-TAG--TTA-TT-GCAGGATT-TT------AAA-------------GAAAAT-TCATG----TTCGTCAG--GTGATCGCTTGGGTATATC-TTCCATTTGCCG-------------------CCTCGCACTACCCGGCCGCCCAAAGA--ACGGTGAGAGT-GGATG-TC--AGAATG--TCTGATTAGGGCACCTAAACTA-TA-TG--------A-TGAatg
gi|2 : tcaaatcatgtaaaAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC--TGATTATTTAAA-AACTTGCTTTCCACCT--TCACCAATTAGAAAT-TGCAATAACTGTCATATGACCCGTG-TGG--TTC-TT-GCGTTA-----------TACC--TCTCCCAATTGAAAAT-TCAAGGTTTTTGGTCAACTTTGATCACTCGGG--TATCATACCACTTCCCGTC----AATCAA-TGTTTATCTCGgggtctgactggccacgtttggacgaagggcggaaactcgtgcttttcactcgtcaccagctgtttacaagaagtcaggat
gi|20 : aataatagtttattgtatatttatttcggtgtatcgggattatttgaacgaagggcggtgacgagttgcggagcacgaaattctccgccctatcgcttccaaataaaatcaagactacaccgaaataaagttcaataaacttacttgttatcaagccaatagaaacttgctttatcatgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgacgatttcaccgatagcatgacaatcgcgggccgtggacgaggaatcacgttgggttcaccctacaacatgtttttgagtcaaatttactacgaaaggcccatgtgttttacaagtacgcactgccatgtcttaaaaatcttattcgtttttttattattgtaataaataattaaaggaactttaaaagattctatccttgtatataagcttttacaattcttcacttgacggacccacgtattgttgtttttcgaGGTCACGAGGATTTGA-TTTTGAT--GAAATTGACGAATCACACATTTTGTGAATTTAAACTGGTCCA-------------GAAGAC-----------------------GATACTAAC------ATGACCA------CGGGCCTA--------CAATTCATGAAT---------------------T-T------TT--GAAATTGTCACG---CGGTATTCAATAA----T--------------TTATTTCCACAGTTCA---G-TTTC-AA----------------------------AGT-ATGCAAATGATGGTTCCG-CCCACTGGTTGTA
gi|21 : CTCAC-TTGTATCA--TGACCAATTAAAAAAGTTTGATGTCTGTCATATGACCTT-G-TGGCTTTC-TT-GCGTGATT-TT------TAAT--TACCCCAA-T-AAAATATCAAGT--TTTTGTCAG--GTGATCGCTCcactttggacaaagggaaaacaccacagccatgatacaat
gi|26 : AC-----TTGGATACTAACTAAAC-ATGACCACA-CCGCGGGTCTAATAGTATGCAATCCCTGAATTTTGA-CCTAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---GTTTTA-AA---------------A----------ATAAT-ATGCAAATGGGAGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTAcaaatcaatatttatttcgctgtatcttgcggaatttagtgtttgcacccgagacaacacgtcgtctacttaaattaagatacaccgaaataaatatacaataactaatact
gi|28 : ATTTTGA-CCGAGAC-------CT-T------GT--GAAATTGCCACG---CGG--------------TATTCAATGATTGATTTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGCCGTTCCG-CCCACCGG-TGTATCTCCAGTTA-TTGTAcacttttaacaaagggaaaacaccacagccataatacatt
gi|3 : cctGAGAGAAT---CGTAA-GAACCATTCAATT-AAT-CGATGAG-TAACAAGATAGAACGAAT--CA-TGAAAAT--CCA-AA---TTACCATAATC--TACG-ATACCTGTCCATGTGA-CAGTTCTCTGCAGTGA-TA-TT--A-AACTTGC--TCCACCAATTG--CAATTAG-AA--TGGCATAA-TGTCATAATACCC--GTTGG--TTTATTAGCTTG-TT-TT------T-AC--TA--CCAA-TGAAGAT-T--AAG--TTTGGTCAA--TTAACTA-TCAGG--TA-C-TA-CACTTCCCG-C----AAGC-ATTGTTTATTTCACcactattaacaaaggtaaaacaccacagccatgatacac
gi|30 : tatagttattgtatttttatttcagtgtatatttaattcattttggatcagagggcggtgacgagtgcggagcacggttctcgccttcgtcaaaataaatcagtacacggaataaatattaaatcttacttgtatccaagccaatagaaggtgctttttcatgaagaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaaccccgaagagtcacgatacatgacatgcggcggacgagacatcgtgaaaagcaaatgcaaagtggtcacctacaaatgtcatttgagtcaaatactacgaagtccatggttttacaagtagcgctcatgtctttaaaaatcttattacgtttattttattgtaatggataatttaagattttaaaagattttatacccttgtataagatttgacaattttttcattgacggacacgggtattattggttttcGAATTTTGA-CCTAAAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|32 : cATTTTGA-CCGAGAC-------CT-T------TT--GAACGTGTCACG---CGG--------------TATTCAATTATTTATTTA----GACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTAcacttttaacaaagggaaaacaccacagccatgatacaat
gi|36 : c--------------T--------------TTA----CACGGCACA---G-TTTA-AA---------------A-----------TAAT-ATGCAAATGGGCGTTCAA-CCCACTGG-TGTATCTCacaaagggaaa
gi|39 : cacgctgtattcaatgatttaAACTGTCATATGACCC--G-TGG--TTC-GT-GCGTGATT-TTTACATGTAAC--TACCCCAA-TGAAAAT-TC-AGG--ATTGGTCAG--TTGATCACTaaaggtaaaacaccacagccatgataaaa
gi|4 : GAGAGAATTCTCGTAAAGAACCATTCAATCTAATC-GATGAGT-AACAAGATA-A-CCAAT-GCAT-GAAAATCCC-ACAA-ACTTA-CATAATCCT-ACGA-TACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAA---TGCAATAACTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAC--TTAATCACTCAGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATTTCGCACTAC----CCGCCCAAATG--TCGGTGAGATT-GGATG-TT--GGATCG--TTTAATTTGGGCACCTAAACTA-TA-TG--------A-TGAC------CC--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GT------AT-A-T----ATTTT-G-----TGTAAATTATACTG--GGAGAC-GATAAC-ATGG-ATATCAACATGACC---CA-G-G---AA---A-TA-G-T-TT-----G-TGAA-TGTTGACTGGGACCTTGCATATCT--ACG-TGCAA-T-----TTT---TATTTGATG-ATGATCACGAGGATTTGA-TTATGAT--GAAATTGACGAATCACTCATTTTGTGATTTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGGTACTGAC------ATAACCACG-CCGCGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCTAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|42 : C-ATGG-ATATCAATGTGACC--ACG-G-GG--AA---A-TA-G-T-TC-----G-TGAA-TTTTAACTGGGACCTTGC----------------A-T-----TTT---TATTTCATG-ATG
gi|44 : G-CCCACTAG-TGTAACTCGAGCTA-TTGTA
gi|5 : --------------T--------------CTA----CACAGCACA---A-TTTA-AA---------------A----------TTAAT-ATGCAAATGATTATTCTA-TCTACTGA-TGTATTTCTCTTCA-TTGTAcacttttaacaaagggaaaaaaaccacagccatgatacaaa
gi|5 : gtattatgactgttgtttttgtccctttatcaaaattgATAA-TCAAT-AGCTTAC-TTGTAACT--TGGCCAAATAGAAA--GATGATATCTGTAATATGGCCT--G-TGG--CTA-TT-GTGGGA---TT------T--C--TA------------AT-TTTATG--TTT---------CGA------AAG--TATT-T-CC-CTTTTCGCT----AAGC-A-TGTATTTATCGCACTAC----TCCCCCAAATA--TCGGTGAGAGT-GCACG-TC--AGAATG--TGTGACCAGGACACCTAAACTAGTA-CG--------A-TGGTTTA---CA--------TGATTTCG----GTCTACAGTTTT-TA-----TTCCATAA---TGATCACGA-GGATTTGATTTGATGAAAAACATG-A---GATG-G-G-ATTAATG---AA-T--------------C-A-C----ATTTT-G-----TG-AAATTAAACTG--GGAGAT-AATAAA-ATGG-ATATTCACA-GGCA--ACG-G-GCCTAG---A-T----T-TT-----A-AGAA-TTTTGACTAG-----TGCTTCTCC--AT--TTCAA-TAAGGATTT---TATTTtaaattattcaagattgtatgacaatcacccacatacttcttttaagcgagccgcggctcttctttatttaaaaaataaaatccttattgaaatggagaagcactagtcaaaattcttaaaatctaggcccgttgcctgtgaatatccattttattatctcccagtttaatttcacaaaatgtgattcattaatcccatctcatgtttttcatcaaatcaaatcctcgtgatcattatggaataaaaactgtagaccgaaatcatgtaaaccatcgtactagtttaggtgtcctggtcacacattctgacgtgcactctcaccgatatttgggggagtagtgcgataaatacatgcttagcgaaaagggaaatactttcgaaacataaaattagaaatcccacaatagccacaggccatattacagatatcatctttctatttggccaagttacaagtaagctattgattatttatttcggtgtgtcttgatttatttggacgaagaacggagactcgtgtttcgcactctctaccactttttgtccaataaaaccaagatacaccgaaataaataatagtaaga
gi|6 : gtattatgactgttgtttttgtccctttatcaaaattgtacaatgaagagaaatacatcagtagatagaataatcatttgcatattaattttaaattgtgctgtgtagataaattattcaagattgtatgacaatcacccacatacttcttttaagcgagccgcggctcttctttatttaaaG--TTGATCACTCGGG--TATC-TACCATTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAACG--TCGGTGAGAGT-GGATA-TC--GGATCG--TTTAATTAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TA-----G----G------AATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACA---AA-TTAC--GT------AT-A-T----ATTTT-G-----TGT-AATTAAACTG--ATGGAC-GATAAC-ATGG-ATATTATCATGACCAAG-G-G-G---AA---A-TA-G-T-TA-----G-TGAA-TTTTGACTGTGACCCTGCATATTTAAA---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGAGTCGA-TTATGAT--GAAATTGACGAATTGCACATTTTGTGAATTTAAACTGGTCCT-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCA------CGGGCC------TATGCAATTGATGAACTTTGA-CTAAGAC-------CT-T------TT--GAAATTGTCACG---CGGTATTCAATGATTTAT--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCTACTGG-TGTATCTCCAGTTA-TTGTAttatttcggtgtgtcttgatttatttggacgaagaacggagactcgtgtttcgcactctctaccactttttgtccaataaaaccaagatacaccgaaataaataatagtaaga
gi|7 : C--TACCCCAA-TGGAAAT-TCAAGG--TTTGGTCAG--TTGATCAATCGGG--TAAT-TACCACTTCCCGTC----AAGC-G-TGTTTATCTCCCATT----------------------GTGAGAGT-GGATG-TA--GGATCG--TTTAATTAGGGCATCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TC---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GTTATCGTAT-A-T----ATTTT-G-----TGTAA-TTAAAATG--GAAGAC-GATAAC-ATGG-ATATCAACATGACC--ACG-G-G---AA---A-TA-G-T-TA-----A-TGAA-TTTTGACTGGGACCTTGCATAGTT--AAA-TGCAA-T-----TTT---AATTTCATG-ATGATCATGAGGATTCTA-TTTTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTAGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATAACC-C--C----GAACTA-----ATGCAATTGATGAATTTTGA-CCG---C-------CT-T------TT--AAAATTGTCACG---CGGTATTCAATGATTTAT--------------TTA----CACAGCACA---G-TTTA-GA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCcactttttacaaagggaaagcaccacagccatgatacaa
gi|9 : atTGGTCACGAGGATTTGA-TTTTGAT--GAAATTGACGAATCACACAT
gi|9 : -TGAC------CA--------CG-----A----G------GATCT-TA-----TT---------TTATCACAA-G-------------------CATG-C---GGTG-A-A-ATT-ACG-------TAC--AC------A--A-C----A------------GT--------------GAGAC-GATAA--ATGG-ATGTCAAAACGAC---GCG-G-G---AA---AACA-G-T-TT-----GGTGAA-TTTTGACTGG----------ACCT--A---TGCAA-TA----TTT---TATGCCACG-cgaggatcttattttatcacaagcatgcggtgaaattacgtacacaacagtgagacgataaatggatgtcaaaacgacgcgggaaaacagtttggtgaattttgactggacctatgcaatattttatgccacgggggaaagaattttgactgggaccttgcatatttatgcaggttttatatatttcatgatgatcacgaagatttgattttgatgaaattgacgaatcacacattttgtgaatttaaactggtccaggagacaataacctggatactaacatgaccaccggtctatacaattgatgaattttgacggagacatttataattttgaaattgtcacgcggtattcaataatttatttacacagcacagtttaaaaataatatgcaaatggtggttccgcctactggtgcatctccagttattgtacactttt
gi|9 : atgtgtgattcgtcaatttcatcaaaatcaaatcctcgC--GGG-G-G---AA---A------------------GAA-TTTTGACTGGGACCTTGCATATTT--A---TGCAGGT-----TTTATATATTTCATG-ATGATCACGAAGATTTGA-TTTTGAT--GAAATTGACGAATCACACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACA----AT-----AAC-----CTGGATACTAAC------ATGACCAC--C----GGTC------TATACAATTGATGAATTTTGA-CGGAGACATTTATAAT-T------TT--GAAATTGTCACG---CGGTATTCAATAATTTAT--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGTGGTTCCG-CCTACTGG-TGCATCTCCAGTTA-TTGTAggggaaagaattttgactgggaccttgcatatttatgcaggttttatatatttcatgatgatcacgaagatttgattttgatgaaattgacgaatcacacattttgtgaatttaaactggtccaggagacaataacctggatactaacatgaccaccggtctatacaattgatgaattttgacggagacatttataattttgaaattgtcacgcggtattcaataatttatttacacagcacagtttaaaaataatatgcaaatggtggttccgcctactggtgcatctccagttattgtacactttt
23 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AGTAATAGTTATTGTATATTTATTTCGGTGTATCTCGATTTATTTGGACGAAGGGCGGTGACGAGTGCGGAGCACGAGTTTCCGCTCTTCGTCCAAATAAATCAAGATACTACGAAATAAATATTCAATAACTTACTTGTATCAAGGCCATTAGAAACTTGTTTTTATCATGACAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGGGCCGTGGACGAGAATTTATATTTTGTCATGAACGCAAATGCACGTGGTCACCCTACAACATGTTTTGAGTCAAAGTATTACGAAGTCCATGTGTTTTACAAGTACTTGCCATCTTATTCCGTTTTTTTATGTAATAAATAATTAAATACCTTTAAAAGATTTATCCTTGTATATAAGATTTTGC
Unaligned ( gi|16 ): CAAATAAATCAAGATGCACCGAAATAAAAATTCAATAACTTACTTGTATCCAGGCCAATAAAAACTTGTTTGTATCTTGACAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCGGGCCGTGGGCGAGAATTTATATTTTGTCGTAAAAGCAAAAGCACGTGGTCACCCTACAGCATGTTTTGAGAAGTATTTCGAAGCCCATGTGTTTTACAAGTAAGCGCTGTCATATCATGTATTAAAAAAAATCTTATTCCATTTTTTATTGTAAAAAAAAAAACTTA
Unaligned ( gi|22 ): TTTTGTCGTGTAAGGAACAACACGTGGTCATCTTACAGCATGATTGCTAAGTCAGTGTGTTTTACAATTACTCGCTGCTATATGTCTAACTCTTATTCCGTTTTTCTTTTCTCTCAAATTATTGTTCTAAAAAGAAGAACTTCAGATGTTTGAGTTGTCTAGTCGCCATTGACGGACCACGTGCTATTGTTTACGAATGAATTCTCTTAAACAACCATTCAATGCGAT
Unaligned ( gi|23 ): GCCGTTTACCAAGGAATTTCACTAGTCTTGTTCGTGTAGCAACCACACATGGTCACCTCAACGTTTTTGAGTAAAATTAGGTATAGAAGTTCTGTATTTTACATACGGGCACTGCATGCATTAAAAAAAGTCTTATTCCATTTTTTCTTTTGTCTAGAATTCTGTAATAAGAAAAACGACTCAGTCCATCCTTGGTATCATAAGATTTACTACCTTTACTTG
Unaligned ( gi|24 ): GTACAGTGCGCATTTTATCATGTCTTTAAAAAGTCTTATTCCATTTTTCTTTTATTTCAGATAGTTGTAATAGAATAAAGAACATTAAATTATTCATTCCTGTATTTAAGATTTTACTATTTTAGTTTTAAGATTTTACTATTTTAGTTTACTAGTCGTCATTGACGGACCACGTGTTGTTGTTTACGTTTGAATTCACCATCACTCATTCCGATGA
Unaligned ( gi|25 ): CCTGGCCGTGGAGGAGAATCTATATTTTGTTGTAAAAAGCAAAAACACTTGGCCAATCTACAGCATGTTTTGAGTCAAATTATTACGAAGCCCATGTGTTTTACAAGCATGCGCTGCCATGTCTTAAAATTTTTATTGTAATAAATAAAGAACTTCAAAAGATTTATCCTTGTATATAAGATTTTACAATGCTACATTAACGGAC
Unaligned ( gi|27 ): CGGTCCGTGGACGAGAATTCATATTTCATCGTAAAAGCAAAAGCACGTGGTCATCCTAGCCTACAGCATGTTTTAAGTCAAATTATTACGAATCCCATGTGTTTTACAAGTACAAGCTGTCATGTCTTTAAAAAAATCTTATTACGTTTTTTATTGTAATAAAACTTCAAAAGATTTATCCTTGTATACAA
Unaligned ( gi|29 ): ACGTGACAGTATGACTGGGGCTTTACGAAGTCCCTAGTTTAACAATTACGCGCTGTCATGTCTTGAAATATTCTTATTTCGTTTTTCTTTCATCTCAAATTATTGTTATAAAAAAGAAATTCAATATTAGAATATATTCGTCATTGACA
Unaligned ( gi|31 ): TATAATTATTGTATATTTATTTCGGTGTATCTTGGTTCATTTGGGCGAAGGTGGTGACAAGTGCGAAGAACGAGTCGTGTCCTTTCTCCAAAAAACAAAAATCAAGATACTCCGAAATGAACATTCAATACTTATTAATAT
Unaligned ( gi|33 ): GATTACGTGGCACATGAAAAAATATAATTGATCATGAGTAGGATTTGGACGAAGGGCGGGAACTCGTACTCGTCACCGCCTTTTTGGATAAGTCAAGATACACCTAAATAAATACACAATAGCTGTTACG
Unaligned ( gi|34 ): TTATTCGGTTTTTCTTTTATCTCAAATTATTGTAAAACAAAAAACTTCAAATGATCCATTCCTATATATAAGAGTTTGCTAGTCGCCGTTGACGGACCACGTTTTGTTACTCGTAAATGGCCATTCCGT
Unaligned ( gi|35 ): TACTACGAAGCCTATGTGTTTTACAAGTAGCGCTGCCATGTCTTAAAAAATCTTGTTAAAAGTTTTTATTGTAATAAATAATTATGTATATAAGATTTTACAATTCTTCATTGA
Unaligned ( gi|37 ): AACAGTTCTTGTATATTTATTTCGGTATACATGTATCTTGATTTATTTGGACAAAGTGTAAAACACGAGTCTCCGCTCTTTGTGCAAATAAAGCAAGATAC
Unaligned ( gi|38 ): GGCGGTGACGAGTGTGGAGCACGAGTCTCAACCCTTCGTCCGAATAAATCAAGATACACCGAAATACATATCAATAACTTACTTGTATCAAGGCCA
Unaligned ( gi|40 ): AGTAATAGTTATTGTATATATTTTTCGGTGTATCTTTTTTTATTTGGATGCAGGGCGGTGACGTGTGCGGAGCACAA
Unaligned ( gi|41 ): GAGGCTCGTGCTTCGCACTTGTCACCACTCTTCGTCCAAATAAATCAAGATACATAAATATACAGTAGCTATTACT
Unaligned ( gi|43 ): ACCGAAATAAATATTCAATAACTTACTTGTTTTAAAATAGGCCAATAGAAACTTGCTTACAAATATCATGAC
Unaligned ( gi|45 ): CGTCCAAATAAATCAAAATACACCGAAATAGATATATAACATAACTGTT
Unaligned ( gi|46 ): CGCACTTGTCACCGCCTTTCGTCCAAATAAATCAAGATACACCG
Unaligned ( gi|47 ): AAATAAATCACATTCTCATACTCCTCTGCCAACGATT
Unaligned ( gi|48 ): TTTATTTGGACGAAGGGCGGAGACTCGTGTGTC
Unaligned ( gi|49 ): ATAGGACGTTTTAAACATGGTACGTGCTTAATT
Unaligned ( gi|50 ): CGAAACGTGACGTGTGACTGGGGCTTTACAAA
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1 1 1 1 1 1 11 11 1 1 111111 11 111111 11111 111 11111111 33333333333333333333333333333333333 222222222 2222222222222222222 11111111111 11 11111111111111111111111111 222 11111 3333333333333 22222222222222222222 222222 2222222 333333 1111111 00000000000000000000000000000 22222222222222222222222222
lowQualScore : 3 0 0 55 66 0 3 5 66 2 2 2 5 0 2 0 11 8 8 88 1 1 5 0 66 777777 2 33 3 55 44 3 555 000000 44 3 6 3 1 99 2 888 55 7 2 2 7777 999 3 00000 0 333 1 3 3 44 1 44 0 3 3 11111111 2 66666666666666666666666666666666666 3 77777 111111111 3 8888888888888888888 3 555 3 3 3 77777 3 0 66666666666 3 888888 3 77777 88 1 44 44 44 3 8888 2 2 44444444444444444444444444 3 1 0 55 444 4 55555 777 5 5 1 66 1 1111111111111 88888888888888888888 666666 9999999 333333 3 3 0000000 2 888888 33 555 77777777777777777777777777777 4444 333 4 6 77777777777777777777777777 4 11 2 2 2
lowQualScore : . . . .. .. . . . .. . . . . . . . .. . . .. . . . . .. ...... . .. . .. .. . ... ...... .. . . . . .. . ... .. . . . .... ... . ..... . ... . . . .. . .. . . . ........ . ................................... . ..... ......... . ................... . ... . . . ..... . . ........... . ...... . ..... .. . .. .. .. . .... . . .......................... . . . .. ... . ..... ... . . . .. . ............. .................... ...... ....... ...... . . ....... . ...... .. ... ............................. .... ... . . .......................... . .. . . .
lowQualScore : 2 0 0 00 55 0 2 5 55 5 5 5 0 0 5 8 44 0 0 00 4 4 7 0 11 777777 4 66 6 00 22 6 555 555555 66 1 7 3 2 22 5 888 00 3 5 6 7777 999 6 33333 1 000 2 6 6 66 8 66 1 3 1 22222222 9 22222222222222222222222222222222222 1 77777 222222222 3 2222222222222222222 3 888 3 3 3 88888 3 5 00000000000 1 222222 1 77777 00 6 66 99 66 1 0000 9 9 00000000000000000000000000 1 8 5 55 444 4 66666 888 0 0 0 99 7 4444444444444 88888888888888888888 999999 0000000 444444 3 8 8888888 9 222222 99 000 44444444444444444444444444444 7777 999 4 7 99999999999999999999999999 4 77 2 4 9
consensus : GAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--TGCGATANCTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAATG--TCGGTGAGAGT-GGATG-TC--GGAACG--TCTGATCAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GC------AT-A-C----ATTTT-G-----TGTAAATTAAACTG--GGAGAC-GATAAC-ATGG-ATATCAACATGACC--GCG-G-G---AA---A-TA-G-T-TC-----G-TGAA-TTTTGACTGGGACCTTGCATATCT--A---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGATTCGA-TTNTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCAC--CCGCGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCGAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGNCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
Reference ( family-2591 ) : GAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--TGCGATANCTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAATG--TCGGTGAGAGT-GGATG-TC--GGAACG--TCTGATCAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GC------AT-A-C----ATTTT-G-----TGTAAATTAAACTG--GGAGAC-GATAAC-ATGG-ATATCAACATGACC--GCG-G-G---AA---A-TA-G-T-TC-----G-TGAA-TTTTGACTGGGACCTTGCATATCT--A---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGATTCGA-TTNTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCAC--CCGCGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCGAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGNCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|1 : AGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC--TGATTATTTAAA-AACTTGCTTTCCACCT--TCACCAATTAGAAAT-TGCAATAACTGTCATATGACCCGTG-TGG--TTC-TT-GCGTTA-----------TACC--TCTCCCAATTGAAAAT-TCAAGGTTTTTGGTCAACTTTGATCACTCGGG--TATCATACCACTTCCCGTC----AATCAA-TGTTTATCTCGCACTAC----CCGCCCAAATGCTTCCGTGAGAGT-GGATG-TCTGGGATCAGTTTTAATTTGGGCACCTAAACTA-TA-TG--------ATTGAC------CC--------TG-----G----G------GATTT-TA-----TT---------TTATCACAACG-------------------CGTGCC---GATGCA-A-ATTGACG---AA-TTAC--GT------AT-A-T----ATTTTAG-----TGTTATTAAAACTG--GCAGACGGATAACAATGGAATATCAACATGACC--G-G-G-G---AA---A-TA-GTT-TT-----G-TGAATTTTTGACTGGGACATTGCATATTT--AAATTGCAA-T-----TTT---TA-TTCATGAATGATCACGAGGATTTGATTTATGATTGAAAATTGACGAATCGCACATTTTGTGAA-TTAAACTGGTCCAAGGGGGGAGGGGGGGGGACGGGAAATTTAAAAACCCCCTTTGGATACTAACTAAACAGTGACCACAACCGCGGGTCTAATAGTATGCAATCCCTGAATTTTGACCCTAGAC-------CT-T------TT--GAAATTGTCACG---CGGT-------------T--------------TTA----CACAGCACA---GTTTTA-AA---------------A----------ATAAT-ATGCAAATGGGAGTTCCGACCCACTGG-TGTATCTCCAGTTACTTGTA
gi|10 : TA-TTCAATAACTTAC-TAGTATCA--TGACCAATCAGAAA--TATGATATTTGTCATATGACAC--G-TGG--TTA-TT-GCGTAATT-TT------TAATATTACCCCAA-TGAAAAT-TCAAGG--ATTTGTCAG--GTGATCGCTTGGG--TATC-TTCCCCTTCCCACC----AAAC-A-CGTTCATCTCACACTGC----TCGCCCAAATG--CTAGTAAGGGT-GGATG-TC--AGAATG--TCTGATCAGGGCTCCAAAACTA-TA-TA--------A-TGAT------TAACACGATTTG-----G----GTCAGCAGTTTT-TA-----TCCCATGATTATTATTGCAA-G-------------------AATG-C---GATG-G-A-ATTGGTGTATAA-CCACAGGC------CT-A-TCTAGATTTT-G-----TG--AATTcacttttaacaaaggggaagaaaacagccacagcccatttaatacatt
gi|11 : caaTACGA-TACCTGT-CAGGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--T--------------ATGACCC--G-TGG--TTC-TT-GTGTGATT-TT------TAAC--TACTCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTCATCTCGCACT----------------------GTGAGAGT-GGATG-TC--GGATCG--TTTAATTTGGACACCTAATCTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-T-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GT------AT-A-T----ATTTT-G-----TGT-AATTAAACTG--GGAGAA-GATAAC-ATGA-ATATCAACATGACC--AGGTG-G---AA---A-TA-G-T-TCTAATAG-TGAA-TTTTGACTG---------ATACCT--A----GCA--------TTT---TATTTCATG-ATGATCATGTGGATTCGA-TTATGAT--GAAATTGACGAATCGCtttatatcggtgtatgttgatttatttggacgaatggtggagactcgtgcttcgtactcatgcacccttcgtccaaataaatcaagatatatacaacaacaatactattacta
gi|12 : c--------------T--------------TTA----CATACCATA---G-TTTACAA---------------ATACATGTAGTATAATTATGCAAATGATC-TTCCA-CC-ACTGA-TGTATCGCTAGTTA-TTGTA
gi|12 : gttgtatcatggtgcggatttttccctttatcaaaagtgCCAAATG---CAGTGAGAGT-GGATG-TC--AGAATG--TCTGATCAGGGCACCTAAACTA-CATTGCAATTTACA-TGAT------T---------TG-----G----GTCTA--GTTTT-TA-----TG---------TCATGGTGA-T-------------------CATA-CATGGATG-A-A-AT-----------TTA-----------ATAA-C----A-TTT-G-----TG-AAAATAAACTG--GGAGAT-GATAAC-ATGA-ATATTAACATGACC--ACG-G-T---GA---A-Ttgaattattgaacaccgctaggcatattcaaatactaaaccggatcgcaatctaagtcagactgaccggatcgcggctcttcttgattttcaaaacaaattcctctttaaatgtgtgaattcaccgtggtcatgttaatattcatgttatcatctcccagtttattttcacaaatgttattaaatttcatccatgtatgatcaccatgacataaaaactagacccaaatcatgtaaattgcaatgtagtttaggtgccctgatcagacattctgacatccactctcactgcatttgg
gi|13 : gttgtatcatggtgcggatttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaagatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgctaggcatattcaaatactaaaccggatcgcaatctaagtcagactgaccggatcgcggctcttcttgattttcaaaacaaattcctctttaaatgtgtga-T------TT--GGAATTGCCACG---CGG--------------TGTTCAATAATTCATTTA----CATACCATA---G-TTTACAA---------------ATACATGTAGTATAATTATGCAAATGATCGTTCCA-CC-ACTGA-TGTATCGCTAGTTA-TTGTA
gi|13 : tgttgtatcatggctgcggagttttccctttatcaaaagtgCCAAATG---CAGTGAGAGTTGGATG-TC--AGAATG--TCTGATCAGGGCACCTAAACTA-CA-T-----------TGGCAATTTACA--------TG-----AATTAG------GGTCT-AG-----TT---------TTAT------G-------------------CATG-C---GATC-ATACATGGATG---AAATTAT--GA------AT-AAC----ATTTT-G-----TGAAAAT-AAACTG--GGAGAT-GATAAC-ATGA-ATATTAACATGACC--ACG-GTG---AATTCA-CACA-T-TT-----G-TGAA-tacttctaaaaccggatcgcaatctaaagtcagactgaaccggatcgcggctcttcttgattttcacaaatgtgtgaattcaccgtggtcatgttaatattcatgttatcatctcccagtttattttcacaaaatgttattcataatttcatccatgtatgatcgcatgcataaaactagaccctaattcatgtaaattgccaatgtagtttaggtgccctgatcagacattctgacatccaactctcactgcatttgg
gi|14 : tgttgtatcatggctgcggagttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaacgatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgcgtggcaattccaaatacttctaaaaccggatcgcaatctaaagtcagactgaaccggatcgcggctcttcttgattATCA--TGACTAGTAAGGAA--TATAATATCTACAAT---------G-TGG--TTA-TT-TCGTGATTGTT------TAAT--TACAACGT-TGAAAA-------G--TTTTGTCAG--AGGATCACTTCGG--TATT-TTGCTTTTCTCATCTTGAAAGC------TTATCTCGCAGTAC----TAACCCGATTG--TCGGTACAAGT-GGATGCCC--AGAATG--TCTGATCAAAGCACCTCAAC-------A--------A-TGAA------CAC-------TG-----G-----------------TG-----TT---------TTA-CACAA-
gi|15 : tgataaaatcaattcatcataatcatcactgaataaaaggtgcaaactcaaa--------------T--------------TTA----CACAGCACA---G-TTTA-AATTTAAAAAACCCCCAA----------AAAGC-ATAAAAATTATTATTCCG-CCCACTGG-TGCATCCCTAGTTA-TTGTAacaataataagctattggatttttatatcggtgtatcttgatttatttggacaaaggacggagaatcgtgcttcgcactcgtcatcacccttcttccaaataaatcaagatactccgatacagatatacaaaaactgatact
gi|15 : ccatcatggccgtggtgtttttccctttataaaacgtgA-TG--------A-TAAT------TA--------TA-----A----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CATG-C---ATTG-A-A-ATTGA-----AA-TAAA--TC------AC-A-T----ATTTT-GTACAATGTAGA--AAAATGCAGGATAC---------TAG--TATCAACTTGGCC--GCG-G-GCCTAA---A-T----C-TC-----C-TGAA-TTTCGACTGGGACTTTACAAATCT--tatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcagatttgtaaagtcccagtcgaaattcaggagatttaggcccgcggccaagttgatactagtatcctgcatttttctacattgtacaaaatatgtgatttatttcaatttcaatgcatgcttgtgataaaataaaatccttataattatcattaaataaaaaacagtagaaatcgccaatgttcatagttgaggtgctcgtatcagacattctg
gi|15 : ccatcatggccgtggtgtttttccctttataaaacgtgtacaataactagggatgcaccagtgggcggaataataatttttatgctttttgggggttttttaaatttaaactgtgctgtgtaaatatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcC--AGAATG--TCTGATACGAGCACCTCAACT---------------A-TGAA------CAT-------TG-----G----C------GATTTCTACTGTTTT---------TTATtaaataaaaaacagtagaaatcgccaatgttcatagttgaggtgctcgtatcagacattctg
gi|17 : ccatcatggccgtggtgtttttccctttataaaacgtgtacaataactagggatgcaccagtgggcggaataataatttttatgctttttgggggttttttaaatttaaactgtgctgtgtaaatatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcagatttgtaaagtcccagtcgaaattcaggagatttaggcccgcggccaagttgatactagtatcctgcatttttctacattgtacaaaatatgtgatttatttcaatttcaatgcatgcttgtgataaaataaaatccttataattatcattaaAATCCATGA--TTCGA-TTTAGAC-------GTAT------TT--GAAATCATCATA---TGGAGTTCATTAACTTAT--------------TTA----CACATCACA---G-TTTACAA---------------A----------ATGAT-ATGCAAATGATAGTTTTC-CCCACTCC-TATATCTCC
gi|17 : atatatacatcaactagagatata-C---GGTG-A-T-ATTGA-----AA-TGAA--AC------AT-A-C----ATTTT-A-----CG-AAATTAACTTA--GGAGGT-GAAAGA-ATGG-ATATCGACATAACC--CTG-G-G---CC---T-TG-A-TGTC-----A-TGAA-TTTTGACTGCGAttcttgctttttaacacgttttcattttacatttgtgaattcgcagtcaaaattcatgacatcaaggcccagggttatgtcgatatccattctttcacctcctaagttaatttcgtaaaatgtatgtttcatttcaatatcaccga
gi|18 : atatatacatcaactagagatataggagatataggagtggggaaaactatcatttgcatatcattttgtaaactgtgatgtgtaaataagttaatgaactccatatgatgatttcaaatacgtctaaatcgaatcatggattttcttgctttttaacacgttttcattttacatttgtgaat-T------TT--GAAATTGTTATG---CGA--------------TGTTCAATAATTCATTTA----CACAGCACA---G-TTTT-AA---------------G----------ATGAT-ATGCAAATGATGGTTCCG-CCCTCTGG-TGTATCTCTAGTTA-TTGTa
gi|18 : ttttatatggatatggtggggtttttcctttgtcaaaagtggATCACACATTTTGTGAAATCAAACTG------------------GGAGA---------------------------ATCAAC------ATG----T--CCGCGAGCCT-AT--------ATTCGTGAATTTTGA-TTGGAAC-------CT-CACACAATCAAGAAAGAGCCACGATTCGG--------------T--------------TTA----GA-ACTACATGTA-TTTG-AA---------------A----------TTGTT-ATGCGAtacatgtagttctaaaccgaatcgtggctctttcttgattgtgtgaggttccaatcaaaattcacgaatataggctcgcggacatgttgattctcccagtttgatttcacaaaatgtgtgatg
gi|18 : ttttatatggatatggtggggtttttcctttgtcaaaagtggacaataactagagatacaccagagggcggaaccatcatttgcatatcatcttaaaactgtgctgtgtaaatgaattattgaacaC------AC-A-C----ATTTT-G-----TG-AAATCAAACTG--GGAGA----------------ATCAACATGTCC--GCG-A-G---CCT--A-TA---T-TC-----G-TGAA-TTTTGATTGGAACCTCACACAg
gi|19 : ttttatatggatatggtggggtttttcctttgtcaaaagtggacaataactagagatacaccagagggcggaaccatcatttgcatatcatcttaaaactgtgctgtgtaaatgaattattgaacatcgcataacaatttcaaatacatgtagttctaaaccgaatcgtggctctttcttgatTATGATCT--T-TAG--TTA-TT-GCAGGATT-TT------AAA-------------GAAAAT-TCATG----TTCGTCAG--GTGATCGCTTGGGTATATC-TTCCATTTGCCG-------------------CCTCGCACTACCCGGCCGCCCAAAGA--ACGGTGAGAGT-GGATG-TC--AGAATG--TCTGATTAGGGCACCTAAACTA-TA-TG--------A-TGAatg
gi|2 : tcaaatcatgtaaaAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC--TGATTATTTAAA-AACTTGCTTTCCACCT--TCACCAATTAGAAAT-TGCAATAACTGTCATATGACCCGTG-TGG--TTC-TT-GCGTTA-----------TACC--TCTCCCAATTGAAAAT-TCAAGGTTTTTGGTCAACTTTGATCACTCGGG--TATCATACCACTTCCCGTC----AATCAA-TGTTTATCTCGgggtctgactggccacgtttggacgaagggcggaaactcgtgcttttcactcgtcaccagctgtttacaagaagtcaggat
gi|20 : aataatagtttattgtatatttatttcggtgtatcgggattatttgaacgaagggcggtgacgagttgcggagcacgaaattctccgccctatcgcttccaaataaaatcaagactacaccgaaataaagttcaataaacttacttgttatcaagccaatagaaacttgctttatcatgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgacgatttcaccgatagcatgacaatcgcgggccgtggacgaggaatcacgttgggttcaccctacaacatgtttttgagtcaaatttactacgaaaggcccatgtgttttacaagtacgcactgccatgtcttaaaaatcttattcgtttttttattattgtaataaataattaaaggaactttaaaagattctatccttgtatataagcttttacaattcttcacttgacggacccacgtattgttgtttttcgaGGTCACGAGGATTTGA-TTTTGAT--GAAATTGACGAATCACACATTTTGTGAATTTAAACTGGTCCA-------------GAAGAC-----------------------GATACTAAC------ATGACCA------CGGGCCTA--------CAATTCATGAAT---------------------T-T------TT--GAAATTGTCACG---CGGTATTCAATAA----T--------------TTATTTCCACAGTTCA---G-TTTC-AA----------------------------AGT-ATGCAAATGATGGTTCCG-CCCACTGGTTGTA
gi|21 : CTCAC-TTGTATCA--TGACCAATTAAAAAAGTTTGATGTCTGTCATATGACCTT-G-TGGCTTTC-TT-GCGTGATT-TT------TAAT--TACCCCAA-T-AAAATATCAAGT--TTTTGTCAG--GTGATCGCTCcactttggacaaagggaaaacaccacagccatgatacaat
gi|26 : AC-----TTGGATACTAACTAAAC-ATGACCACA-CCGCGGGTCTAATAGTATGCAATCCCTGAATTTTGA-CCTAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---GTTTTA-AA---------------A----------ATAAT-ATGCAAATGGGAGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTAcaaatcaatatttatttcgctgtatcttgcggaatttagtgtttgcacccgagacaacacgtcgtctacttaaattaagatacaccgaaataaatatacaataactaatact
gi|28 : ATTTTGA-CCGAGAC-------CT-T------GT--GAAATTGCCACG---CGG--------------TATTCAATGATTGATTTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGCCGTTCCG-CCCACCGG-TGTATCTCCAGTTA-TTGTAcacttttaacaaagggaaaacaccacagccataatacatt
gi|3 : cctGAGAGAAT---CGTAA-GAACCATTCAATT-AAT-CGATGAG-TAACAAGATAGAACGAAT--CA-TGAAAAT--CCA-AA---TTACCATAATC--TACG-ATACCTGTCCATGTGA-CAGTTCTCTGCAGTGA-TA-TT--A-AACTTGC--TCCACCAATTG--CAATTAG-AA--TGGCATAA-TGTCATAATACCC--GTTGG--TTTATTAGCTTG-TT-TT------T-AC--TA--CCAA-TGAAGAT-T--AAG--TTTGGTCAA--TTAACTA-TCAGG--TA-C-TA-CACTTCCCG-C----AAGC-ATTGTTTATTTCACcactattaacaaaggtaaaacaccacagccatgatacac
gi|30 : tatagttattgtatttttatttcagtgtatatttaattcattttggatcagagggcggtgacgagtgcggagcacggttctcgccttcgtcaaaataaatcagtacacggaataaatattaaatcttacttgtatccaagccaatagaaggtgctttttcatgaagaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaaccccgaagagtcacgatacatgacatgcggcggacgagacatcgtgaaaagcaaatgcaaagtggtcacctacaaatgtcatttgagtcaaatactacgaagtccatggttttacaagtagcgctcatgtctttaaaaatcttattacgtttattttattgtaatggataatttaagattttaaaagattttatacccttgtataagatttgacaattttttcattgacggacacgggtattattggttttcGAATTTTGA-CCTAAAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|32 : cATTTTGA-CCGAGAC-------CT-T------TT--GAACGTGTCACG---CGG--------------TATTCAATTATTTATTTA----GACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTAcacttttaacaaagggaaaacaccacagccatgatacaat
gi|36 : c--------------T--------------TTA----CACGGCACA---G-TTTA-AA---------------A-----------TAAT-ATGCAAATGGGCGTTCAA-CCCACTGG-TGTATCTCacaaagggaaa
gi|39 : cacgctgtattcaatgatttaAACTGTCATATGACCC--G-TGG--TTC-GT-GCGTGATT-TTTACATGTAAC--TACCCCAA-TGAAAAT-TC-AGG--ATTGGTCAG--TTGATCACTaaaggtaaaacaccacagccatgataaaa
gi|4 : GAGAGAATTCTCGTAAAGAACCATTCAATCTAATC-GATGAGT-AACAAGATA-A-CCAAT-GCAT-GAAAATCCC-ACAA-ACTTA-CATAATCCT-ACGA-TACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAA---TGCAATAACTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAC--TTAATCACTCAGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATTTCGCACTAC----CCGCCCAAATG--TCGGTGAGATT-GGATG-TT--GGATCG--TTTAATTTGGGCACCTAAACTA-TA-TG--------A-TGAC------CC--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GT------AT-A-T----ATTTT-G-----TGTAAATTATACTG--GGAGAC-GATAAC-ATGG-ATATCAACATGACC---CA-G-G---AA---A-TA-G-T-TT-----G-TGAA-TGTTGACTGGGACCTTGCATATCT--ACG-TGCAA-T-----TTT---TATTTGATG-ATGATCACGAGGATTTGA-TTATGAT--GAAATTGACGAATCACTCATTTTGTGATTTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGGTACTGAC------ATAACCACG-CCGCGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCTAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|42 : C-ATGG-ATATCAATGTGACC--ACG-G-GG--AA---A-TA-G-T-TC-----G-TGAA-TTTTAACTGGGACCTTGC----------------A-T-----TTT---TATTTCATG-ATG
gi|44 : G-CCCACTAG-TGTAACTCGAGCTA-TTGTA
gi|5 : --------------T--------------CTA----CACAGCACA---A-TTTA-AA---------------A----------TTAAT-ATGCAAATGATTATTCTA-TCTACTGA-TGTATTTCTCTTCA-TTGTAcacttttaacaaagggaaaaaaaccacagccatgatacaaa
gi|5 : gtattatgactgttgtttttgtccctttatcaaaattgATAA-TCAAT-AGCTTAC-TTGTAACT--TGGCCAAATAGAAA--GATGATATCTGTAATATGGCCT--G-TGG--CTA-TT-GTGGGA---TT------T--C--TA------------AT-TTTATG--TTT---------CGA------AAG--TATT-T-CC-CTTTTCGCT----AAGC-A-TGTATTTATCGCACTAC----TCCCCCAAATA--TCGGTGAGAGT-GCACG-TC--AGAATG--TGTGACCAGGACACCTAAACTAGTA-CG--------A-TGGTTTA---CA--------TGATTTCG----GTCTACAGTTTT-TA-----TTCCATAA---TGATCACGA-GGATTTGATTTGATGAAAAACATG-A---GATG-G-G-ATTAATG---AA-T--------------C-A-C----ATTTT-G-----TG-AAATTAAACTG--GGAGAT-AATAAA-ATGG-ATATTCACA-GGCA--ACG-G-GCCTAG---A-T----T-TT-----A-AGAA-TTTTGACTAG-----TGCTTCTCC--AT--TTCAA-TAAGGATTT---TATTTtaaattattcaagattgtatgacaatcacccacatacttcttttaagcgagccgcggctcttctttatttaaaaaataaaatccttattgaaatggagaagcactagtcaaaattcttaaaatctaggcccgttgcctgtgaatatccattttattatctcccagtttaatttcacaaaatgtgattcattaatcccatctcatgtttttcatcaaatcaaatcctcgtgatcattatggaataaaaactgtagaccgaaatcatgtaaaccatcgtactagtttaggtgtcctggtcacacattctgacgtgcactctcaccgatatttgggggagtagtgcgataaatacatgcttagcgaaaagggaaatactttcgaaacataaaattagaaatcccacaatagccacaggccatattacagatatcatctttctatttggccaagttacaagtaagctattgattatttatttcggtgtgtcttgatttatttggacgaagaacggagactcgtgtttcgcactctctaccactttttgtccaataaaaccaagatacaccgaaataaataatagtaaga
gi|6 : gtattatgactgttgtttttgtccctttatcaaaattgtacaatgaagagaaatacatcagtagatagaataatcatttgcatattaattttaaattgtgctgtgtagataaattattcaagattgtatgacaatcacccacatacttcttttaagcgagccgcggctcttctttatttaaaG--TTGATCACTCGGG--TATC-TACCATTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAACG--TCGGTGAGAGT-GGATA-TC--GGATCG--TTTAATTAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TA-----G----G------AATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACA---AA-TTAC--GT------AT-A-T----ATTTT-G-----TGT-AATTAAACTG--ATGGAC-GATAAC-ATGG-ATATTATCATGACCAAG-G-G-G---AA---A-TA-G-T-TA-----G-TGAA-TTTTGACTGTGACCCTGCATATTTAAA---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGAGTCGA-TTATGAT--GAAATTGACGAATTGCACATTTTGTGAATTTAAACTGGTCCT-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCA------CGGGCC------TATGCAATTGATGAACTTTGA-CTAAGAC-------CT-T------TT--GAAATTGTCACG---CGGTATTCAATGATTTAT--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCTACTGG-TGTATCTCCAGTTA-TTGTAttatttcggtgtgtcttgatttatttggacgaagaacggagactcgtgtttcgcactctctaccactttttgtccaataaaaccaagatacaccgaaataaataatagtaaga
gi|7 : C--TACCCCAA-TGGAAAT-TCAAGG--TTTGGTCAG--TTGATCAATCGGG--TAAT-TACCACTTCCCGTC----AAGC-G-TGTTTATCTCCCATT----------------------GTGAGAGT-GGATG-TA--GGATCG--TTTAATTAGGGCATCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TC---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GTTATCGTAT-A-T----ATTTT-G-----TGTAA-TTAAAATG--GAAGAC-GATAAC-ATGG-ATATCAACATGACC--ACG-G-G---AA---A-TA-G-T-TA-----A-TGAA-TTTTGACTGGGACCTTGCATAGTT--AAA-TGCAA-T-----TTT---AATTTCATG-ATGATCATGAGGATTCTA-TTTTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTAGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATAACC-C--C----GAACTA-----ATGCAATTGATGAATTTTGA-CCG---C-------CT-T------TT--AAAATTGTCACG---CGGTATTCAATGATTTAT--------------TTA----CACAGCACA---G-TTTA-GA---------------A----------ATAAT-ATGCAAATGGGCGTTCCG-CCcactttttacaaagggaaagcaccacagccatgatacaa
gi|9 : atTGGTCACGAGGATTTGA-TTTTGAT--GAAATTGACGAATCACACAT
gi|9 : -TGAC------CA--------CG-----A----G------GATCT-TA-----TT---------TTATCACAA-G-------------------CATG-C---GGTG-A-A-ATT-ACG-------TAC--AC------A--A-C----A------------GT--------------GAGAC-GATAA--ATGG-ATGTCAAAACGAC---GCG-G-G---AA---AACA-G-T-TT-----GGTGAA-TTTTGACTGG----------ACCT--A---TGCAA-TA----TTT---TATGCCACG-cgaggatcttattttatcacaagcatgcggtgaaattacgtacacaacagtgagacgataaatggatgtcaaaacgacgcgggaaaacagtttggtgaattttgactggacctatgcaatattttatgccacgggggaaagaattttgactgggaccttgcatatttatgcaggttttatatatttcatgatgatcacgaagatttgattttgatgaaattgacgaatcacacattttgtgaatttaaactggtccaggagacaataacctggatactaacatgaccaccggtctatacaattgatgaattttgacggagacatttataattttgaaattgtcacgcggtattcaataatttatttacacagcacagtttaaaaataatatgcaaatggtggttccgcctactggtgcatctccagttattgtacactttt
gi|9 : atgtgtgattcgtcaatttcatcaaaatcaaatcctcgC--GGG-G-G---AA---A------------------GAA-TTTTGACTGGGACCTTGCATATTT--A---TGCAGGT-----TTTATATATTTCATG-ATGATCACGAAGATTTGA-TTTTGAT--GAAATTGACGAATCACACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACA----AT-----AAC-----CTGGATACTAAC------ATGACCAC--C----GGTC------TATACAATTGATGAATTTTGA-CGGAGACATTTATAAT-T------TT--GAAATTGTCACG---CGGTATTCAATAATTTAT--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGTGGTTCCG-CCTACTGG-TGCATCTCCAGTTA-TTGTAggggaaagaattttgactgggaccttgcatatttatgcaggttttatatatttcatgatgatcacgaagatttgattttgatgaaattgacgaatcacacattttgtgaatttaaactggtccaggagacaataacctggatactaacatgaccaccggtctatacaattgatgaattttgacggagacatttataattttgaaattgtcacgcggtattcaataatttatttacacagcacagtttaaaaataatatgcaaatggtggttccgcctactggtgcatctccagttattgtacactttt
blockSeqs : T A T CC TT G A T TT C C C C C C AA C C AG T C T T AT AGTTTG T GT T CT TA A TTG TACATG AT C T A A TT T CTT TA A T C TTGA AA G CCGGC C A T C . A . G T CAATTTAC . TAACACGATTTGGGTCAGCA C CTGTT CCATGATTA . GATTTGATTTGATGAAAAA . ATG . T C TGTAT A CGTTATCGT A TCTAG . TACAA AA T CA A C . AAG T T AAATAGTTCTAATAG . G AA CG G AAGGA ATA . . A . A . GATAAC TAAAC ACACCG TAATAG . T ATTTATA A ACACAA AA ATT TGTTCAATAATTCAT TTTC TGT T C TTTAAAAAACCCCCAA T TC . T .
blockSeqs : T . . C T . A . T C C C . . C A . . G . A . . . TTGCA T T . . A . TT . . C . . A . G G . . A T . AT A T T A . . . T . . . . . TTACATGATTTCGGTCTACA . . CCATAA . . . . . . . CG . CAGGC . AC . . TA T . T C . AG . . AATTCACACATTTG . G . AA . A . . . T . T . GATAAC . ACGCCG TAATAG . G . . . . . AGTTCATTAACTTAT . . . C ATACATGTAGT T TC . . .
blockSeqs : . . . C T . . . T . . . . . . A . . G . A . . . TATG A . . . C . TT . . C . . A . T T . . T T . A A T A A . . . A . . . . . AATTTACATGAATTAG . . . . . . . . . . TG . CGT . T . . TA T . T C . AC . . AAAACAGTTTGG . A . T . . . . . A . T . GATAAC . TCCG TAT . T . . . . . TGTTCAATAATTCAT . . . C ATACATGTAGT . TT . . .
blockSeqs : A . . . . A . . . TATA T . . . A . TT . . T . . A . C A . . T T . A A C T G . . . A . . . . . TTGGGTCTA . . . . . . . . . . CG . TGA . C . . TA T . C A . AC . . CCTAAATCTCC . G . . . . . . . A . T . AATAAC . ACC TA . G . . . . . TATTCAATGATTGAT . . . . A . TA . . .
blockSeqs : . A . . . TGGC A . . . A . TT . . C . . A . G G . . A T . A A T T G . . . A . . . . . CATTGGC . . . . . . . . . . TG . ATC . T . . T C . T C . GC . . CCTTGATGTCA . G . . . . . . . T . T . . . CC TA . T . . . . . TATTCAATTATTTAT . . . . G . TG . . .
blockSeqs : . . . . . TGCA A . . . C . TT . . C . . A . T G . . A C . A A C T G . . . A . . . . . CATGGG . . . . . . . . . . CA . AAC . C . . A T . C C . CT . . GAAATAGTTCG . G . . . . . . . T . T . . . A . . G . . . . . TATTCAATGATTTAT . . . . A . TG . . .
blockSeqs : . . GATG A . . . C . TT . . C . . T . G T . . A T . A . . . G . . . A . . . . . CACTGG . . . . . . . . . . CG . CGT . C . . A T . T A . GC . . CCTAGATTTTA . G . . . . . . . T . . A . . T . . . . . TATTCAATGATTTAT . . . . A . GA . . .
blockSeqs : . T T . . . C . TT . . C . . A . G T . . A T . G . . . G . . . T . . . . . TATAAG . . . . . . . . . . CG . CGT . T . . A T . C C . AC . . CCTATATTCG . G . . . . . . A . . . . . TATTCAATAATTTAT . . . . A . CC . . .
blockSeqs : . . . . C . . . . . . . . . G T . . A . . . . . . . . A . . . . . CCTGGG . . . . . . . . . . . . CAC . C . . A T . C C . AC . . AAATAGTTTG . . . . G . . . . . TATTCAATAAT . . . . A . GC . . .
blockSeqs : . . . A . . . . . . . . . G T . . . . . . . . . . . T . . . . . CATAGG . . . . . . . . . . . . . . T . . T . . C . . AC . . AAATAGTTAG . . . G . . . . . T . . . . A . GC . . .
blockSeqs : . . . . . . . T . T . . . . . CATGGG . . . . . . . . . . . . . T . . T . . . . . GC . . AAATAGTTAA . . . . . . . . . T . . . . A . GC . . .
blockSeqs : . . . . CACGAG . . . . C . . . . . . GG . . AAA . . . . . T . . . . A . GC . . .
blockSeqs : . C . . . . . . T . . . . A . TT . . .
blockSeqs : T . . . . A . GC . .
blockSeqs : T . . . . A . GC . .
blockSeqs : T . . . . A . TG . .
blockSeqs : T . . . . . . .
blockSeqCons : A* G* TACG** ** TT* ** T** A** T** ** ** N* C* C* AC** *** ** ************* GATAAC************** ****** ACC**** TTTCAATATTAT*****************
originalCons : GAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--TGCGATANCTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAATG--TCGGTGAGAGT-GGATG-TC--GGAACG--TCTGATCAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GC------AT-A-C----ATTTT-G-----TGTAAATTAAACTG--GGAGAC-GATAAC-ATGG-ATATCAACATGACC--GCG-G-G---AA---A-TA-G-T-TC-----G-TGAA-TTTTGACTGGGACCTTGCATATCT--A---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGATTCGA-TTNTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCAC--CCGCGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCGAGAC-------CT-T------TT--GAAATTGTCACG---CGG--------------T--------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGNCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
finalCons : GAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGA-TACCTGT-CATGTGACCAGTTCT-TGCG-TGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAATACG--ATANCTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAGT--TGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGCA--TGTTTATCTCGCACTAC----CCGCCCAAATGT--CGGTGAGAGT-GGATG-TC--GGAACG--TCTGATCAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTATCACAA-G-------------------CGTG-C---GATG-A-A-ATTGACG---AA-TTAC--GC------AT-A-C----ATTTT-G-----TGN-AATTAAACTG--GGAGAC-GATAAC-ATGG-ATATCAACATGACCAC--G-G-G---AA---A-TA-G-T-TC-----G-TGAA-TTTTGACTGGGACCTTGCATATCT--A---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGATTCGA-TTNTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACGATAAC--------------TTGGATACTAAC------ATGACCACC----CGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCGAGAC-------CT-T------TT--GAAATTGTCACG---CGGTTTCAATATTAT-----------------TTA----CACAGCACA---G-TTTA-AA---------------A----------ATAAT-ATGCAAATGGNCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
23 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AGTAATAGTTATTGTATATTTATTTCGGTGTATCTCGATTTATTTGGACGAAGGGCGGTGACGAGTGCGGAGCACGAGTTTCCGCTCTTCGTCCAAATAAATCAAGATACTACGAAATAAATATTCAATAACTTACTTGTATCAAGGCCATTAGAAACTTGTTTTTATCATGACAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGGGCCGTGGACGAGAATTTATATTTTGTCATGAACGCAAATGCACGTGGTCACCCTACAACATGTTTTGAGTCAAAGTATTACGAAGTCCATGTGTTTTACAAGTACTTGCCATCTTATTCCGTTTTTTTATGTAATAAATAATTAAATACCTTTAAAAGATTTATCCTTGTATATAAGATTTTGC
Unaligned ( gi|16 ): CAAATAAATCAAGATGCACCGAAATAAAAATTCAATAACTTACTTGTATCCAGGCCAATAAAAACTTGTTTGTATCTTGACAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCGGGCCGTGGGCGAGAATTTATATTTTGTCGTAAAAGCAAAAGCACGTGGTCACCCTACAGCATGTTTTGAGAAGTATTTCGAAGCCCATGTGTTTTACAAGTAAGCGCTGTCATATCATGTATTAAAAAAAATCTTATTCCATTTTTTATTGTAAAAAAAAAAACTTA
Unaligned ( gi|22 ): TTTTGTCGTGTAAGGAACAACACGTGGTCATCTTACAGCATGATTGCTAAGTCAGTGTGTTTTACAATTACTCGCTGCTATATGTCTAACTCTTATTCCGTTTTTCTTTTCTCTCAAATTATTGTTCTAAAAAGAAGAACTTCAGATGTTTGAGTTGTCTAGTCGCCATTGACGGACCACGTGCTATTGTTTACGAATGAATTCTCTTAAACAACCATTCAATGCGAT
Unaligned ( gi|23 ): GCCGTTTACCAAGGAATTTCACTAGTCTTGTTCGTGTAGCAACCACACATGGTCACCTCAACGTTTTTGAGTAAAATTAGGTATAGAAGTTCTGTATTTTACATACGGGCACTGCATGCATTAAAAAAAGTCTTATTCCATTTTTTCTTTTGTCTAGAATTCTGTAATAAGAAAAACGACTCAGTCCATCCTTGGTATCATAAGATTTACTACCTTTACTTG
Unaligned ( gi|24 ): GTACAGTGCGCATTTTATCATGTCTTTAAAAAGTCTTATTCCATTTTTCTTTTATTTCAGATAGTTGTAATAGAATAAAGAACATTAAATTATTCATTCCTGTATTTAAGATTTTACTATTTTAGTTTTAAGATTTTACTATTTTAGTTTACTAGTCGTCATTGACGGACCACGTGTTGTTGTTTACGTTTGAATTCACCATCACTCATTCCGATGA
Unaligned ( gi|25 ): CCTGGCCGTGGAGGAGAATCTATATTTTGTTGTAAAAAGCAAAAACACTTGGCCAATCTACAGCATGTTTTGAGTCAAATTATTACGAAGCCCATGTGTTTTACAAGCATGCGCTGCCATGTCTTAAAATTTTTATTGTAATAAATAAAGAACTTCAAAAGATTTATCCTTGTATATAAGATTTTACAATGCTACATTAACGGAC
Unaligned ( gi|27 ): CGGTCCGTGGACGAGAATTCATATTTCATCGTAAAAGCAAAAGCACGTGGTCATCCTAGCCTACAGCATGTTTTAAGTCAAATTATTACGAATCCCATGTGTTTTACAAGTACAAGCTGTCATGTCTTTAAAAAAATCTTATTACGTTTTTTATTGTAATAAAACTTCAAAAGATTTATCCTTGTATACAA
Unaligned ( gi|29 ): ACGTGACAGTATGACTGGGGCTTTACGAAGTCCCTAGTTTAACAATTACGCGCTGTCATGTCTTGAAATATTCTTATTTCGTTTTTCTTTCATCTCAAATTATTGTTATAAAAAAGAAATTCAATATTAGAATATATTCGTCATTGACA
Unaligned ( gi|31 ): TATAATTATTGTATATTTATTTCGGTGTATCTTGGTTCATTTGGGCGAAGGTGGTGACAAGTGCGAAGAACGAGTCGTGTCCTTTCTCCAAAAAACAAAAATCAAGATACTCCGAAATGAACATTCAATACTTATTAATAT
Unaligned ( gi|33 ): GATTACGTGGCACATGAAAAAATATAATTGATCATGAGTAGGATTTGGACGAAGGGCGGGAACTCGTACTCGTCACCGCCTTTTTGGATAAGTCAAGATACACCTAAATAAATACACAATAGCTGTTACG
Unaligned ( gi|34 ): TTATTCGGTTTTTCTTTTATCTCAAATTATTGTAAAACAAAAAACTTCAAATGATCCATTCCTATATATAAGAGTTTGCTAGTCGCCGTTGACGGACCACGTTTTGTTACTCGTAAATGGCCATTCCGT
Unaligned ( gi|35 ): TACTACGAAGCCTATGTGTTTTACAAGTAGCGCTGCCATGTCTTAAAAAATCTTGTTAAAAGTTTTTATTGTAATAAATAATTATGTATATAAGATTTTACAATTCTTCATTGA
Unaligned ( gi|37 ): AACAGTTCTTGTATATTTATTTCGGTATACATGTATCTTGATTTATTTGGACAAAGTGTAAAACACGAGTCTCCGCTCTTTGTGCAAATAAAGCAAGATAC
Unaligned ( gi|38 ): GGCGGTGACGAGTGTGGAGCACGAGTCTCAACCCTTCGTCCGAATAAATCAAGATACACCGAAATACATATCAATAACTTACTTGTATCAAGGCCA
Unaligned ( gi|40 ): AGTAATAGTTATTGTATATATTTTTCGGTGTATCTTTTTTTATTTGGATGCAGGGCGGTGACGTGTGCGGAGCACAA
Unaligned ( gi|41 ): GAGGCTCGTGCTTCGCACTTGTCACCACTCTTCGTCCAAATAAATCAAGATACATAAATATACAGTAGCTATTACT
Unaligned ( gi|43 ): ACCGAAATAAATATTCAATAACTTACTTGTTTTAAAATAGGCCAATAGAAACTTGCTTACAAATATCATGAC
Unaligned ( gi|45 ): CGTCCAAATAAATCAAAATACACCGAAATAGATATATAACATAACTGTT
Unaligned ( gi|46 ): CGCACTTGTCACCGCCTTTCGTCCAAATAAATCAAGATACACCG
Unaligned ( gi|47 ): AAATAAATCACATTCTCATACTCCTCTGCCAACGATT
Unaligned ( gi|48 ): TTTATTTGGACGAAGGGCGGAGACTCGTGTGTC
Unaligned ( gi|49 ): ATAGGACGTTTTAAACATGGTACGTGCTTAATT
Unaligned ( gi|50 ): CGAAACGTGACGTGTGACTGGGGCTTTACAAA
Alignments
lowQualScore : 1 1 1 1 1 1 1 11 1 1 111111 11 111111 11111 111 11111111 33333333333333333333333333333333333 222222222 333333333333333333333333333333333333333333333333333 111111 22222222222 11111111 1111111111111 2222222 11111 3333333333333 222222222222 11111 333333 444444 222222 1111111 5555555555555555555 222222222222222222222222222
lowQualScore : 3 0 0 55 66 0 3 5 66 2 2 2 5 0 2 0 6 8 8 88 1 1 5 0 66 777777 2 33 3 55 44 3 555 000000 44 3 6 3 1 99 2 888 55 7 2 2 7777 999 3 00000 0 333 1 3 3 44 1 44 0 3 3 11111111 2 66666666666666666666666666666666666 3 77777 111111111 444444444444444444444444444444444444444444444444444 3 555 3 77 3 666666 3 2 11111111111 3 888888 3 3 77 3 888 44 77 77 3 3 33 3 3 66666666 0000000000000 3 7777777 5 22222 888 5 5 1 66 6666666666666 111111111111 44444 000000 444444 4 888888 3 5 1111111 2 5555555555555555555 4 7 111111111111111111111111111 4 11 2 2 2
lowQualScore : . . . .. .. . . . .. . . . . . . . . . . .. . . . . .. ...... . .. . .. .. . ... ...... .. . . . . .. . ... .. . . . .... ... . ..... . ... . . . .. . .. . . . ........ . ................................... . ..... ......... ................................................... . ... . .. . ...... . . ........... . ...... . . .. . ... .. .. .. . . .. . . ........ ............. . ....... . ..... ... . . . .. ............. ............ ..... ...... ...... . ...... . . ....... . ................... . . ........................... . .. . . .
lowQualScore : 2 0 0 00 55 0 2 5 55 5 5 5 0 0 5 8 0 0 0 00 4 4 7 0 11 333333 4 66 6 00 22 6 555 555555 66 1 7 3 2 22 5 888 00 3 5 6 7777 999 6 33333 1 000 2 6 6 66 8 66 1 3 1 22222222 9 22222222222222222222222222222222222 1 77777 222222222 111111111111111111111111111111111111111111111111111 3 888 3 99 3 222222 3 5 22222222222 1 222222 1 1 11 1 555 66 00 33 1 1 22 1 1 33333333 7777777777777 3 7777777 0 55555 888 7 0 0 99 7777777777777 888888888888 33333 777777 333333 0 444444 6 1 8888888 9 0000000000000000000 7 1 111111111111111111111111111 7 77 2 4 9
consensus : GAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--TGCGATANCTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAATG--TCGGTGAGAGT-GGATG-TC--GGAACG--TCTGATCAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTAT-------------------------CACAA-G-------------------CGTG-C---GATG-A--A-ATTGACG----AA-TTAC--GC------AT-A-C----ATTTT-G-TG-AAAT-T---AAACTG--GGAGAC-GATAAC--ATG-G-ATATCAACATGACC-ACG-G-G---AA---ATA-G-T-TC-----GTGAA-TTTTGACTGGGACCTTGCATATCT--A---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGATTCGA-TTNTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCAC--C--CGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCNAGAC-------CT-TTTGAAATTGTCACGCGG-TATTCAA---T-AATTT-ATTTACACAGCACAG-TTTA-A---------------AA----------ATAAT-ATGCAAATGGNCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
Reference ( family-2591 ) : GAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACG-ATACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--TACGATANCTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAATG--TCGGTGAGAGT-GGATG-TC--GGAACG--TCTGATCAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTAT-------------------------CACAA-G-------------------CGTG-C---GATG-A--A-ATTGACG----AA-TTAC--GC------AT-A-C----ATTTT-G-TG-NAAT-T---AAACTG--GGAGAC-GATAAC--ATG-G-ATATCAACATGACC-ACG-G-G---AA---ATA-G-T-TC-----GTGAA-TTTTGACTGGGACCTTGCATATCT--A---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGATTCGA-TTNTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCAC--C--CGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCGAGAC-------CT-TTTGAAATTGTCACGCGG-T-TTCAA---T-A--TT-ATTTACACAGCACAG-TTTA-A---------------AA----------ATAAT-ATGCAAATGGNCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|1 : AGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC--TGATTATTTAAA-AACTTGCTTTCCACCT--TCACCAATTAGAAAT-TGCAATAACTGTCATATGACCCGTG-TGG--TTC-TT-GCGTTA-----------TACC--TCTCCCAATTGAAAAT-TCAAGGTTTTTGGTCAACTTTGATCACTCGGG--TATCATACCACTTCCCGTC----AATCAA-TGTTTATCTCGCACTAC----CCGCCCAAATGCTTCCGTGAGAGT-GGATG-TCTGGGATCAGTTTTAATTTGGGCACCTAAACTA-TA-TG--------ATTGAC------CC--------TG-----G----G------GATTT-TA-----TT---------TTAT-------------------------CACAACG-------------------CGTGCC---GATGCA--A-ATTGACG----AA-TTAC--GT------AT-A-T----ATTTTAG-TG-TTAT-TA--AAACTG--GCAGACGGATAACA-ATG-GAATATCAACATGACC-G-G-G-G---AA---ATA-GTT-TT-----GTGAATTTTTGACTGGGACATTGCATATTT--AAATTGCAA-T-----TTT---TA-TTCATGAATGATCACGAGGATTTGATTTATGATTGAAAATTGACGAATCGCACATTTTGTGAA-TTAAACTGGTCCAAGGGGGGAGGGGGGGGGACGGGAAATTTAAAAACCCCCTTTGGATACTAACTAAACAGTGACCACAACCGCGGGTCTAATAGTATGCAATCCCTGAATTTTGACCCTAGAC-------CT-TTTGAAATTGTCACGCGG-T------------------TTTACACAGCACAGTTTTA-A---------------AA----------ATAAT-ATGCAAATGGGAGTTCCGACCCACTGG-TGTATCTCCAGTTACTTGTA
gi|10 : TA-TTCAATAACTTAC-TAGTATCA--TGACCAATCAGAAA--TATGATATTTGTCATATGACAC--G-TGG--TTA-TT-GCGTAATT-TT------TAATATTACCCCAA-TGAAAAT-TCAAGG--ATTTGTCAG--GTGATCGCTTGGG--TATC-TTCCCCTTCCCACC----AAAC-A-CGTTCATCTCACACTGC----TCGCCCAAATG--CTAGTAAGGGT-GGATG-TC--AGAATG--TCTGATCAGGGCTCCAAAACTA-TA-TA--------A-TGAT------TAACACGATTTG-----G----GTCAGCAGTTTT-TA-----TCCCATGATTATTAT-------------------------TGCAA-G-------------------AATG-C---GATG-G--A-ATTGGTGTAT-AA-CCACAGGC------CT-A-TCTAGATTTT-G-TG--AAT-T---cacttttaacaaaggggaagaaaacagccacagcccatttaatacatt
gi|11 : caaTACG-ATACCTGT-CAGGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAAA--TA--------------TGACCC--G-TGG--TTC-TT-GTGTGATT-TT------TAAC--TACTCCAA-TGAAAAT-TCAAGG--TTTGGTCAG--TTGATCACTCGGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTCATCTCGCACT----------------------GTGAGAGT-GGATG-TC--GGATCG--TTTAATTTGGACACCTAATCTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TT---------TTAT-------------------------CACAA-T-------------------CGTG-C---GATG-A--A-ATTGACG----AA-TTAC--GT------AT-A-T----ATTTT-G-TG-TAAT-T---AAACTG--GGAGAA-GATAAC--ATG-A-ATATCAACATGACC-AGGTG-G---AA---ATA-G-T-TCTAATAGTGAA-TTTTGACTG---------ATACCT--A----GCA--------TTT---TATTTCATG-ATGATCATGTGGATTCGA-TTATGAT--GAAATTGACGAATCGCtttatatcggtgtatgttgatttatttggacgaatggtggagactcgtgcttcgtactcatgcacccttcgtccaaataaatcaagatatatacaacaacaatactattacta
gi|12 : c-TTTGAATATGCCTAGCGG-TGTTCAA---T-AATTC-ATTTACATACCATAG-TTTACA---------------AATACATGTAGTATAATTATGCAAATGATC-TTCCA-CC-ACTGA-TGTATCGCTAGTTA-TTGTA
gi|12 : gttgtatcatggtgcggatttttccctttatcaaaagtgCCAAATG---CAGTGAGAGT-GGATG-TC--AGAATG--TCTGATCAGGGCACCTAAACTA-CATTGCAATTTACA-TGAT------T---------TG-----G----GTCTA--GTTTT-TA-----TG---------TCAT-------------------------GGTGA-T-------------------CATA-CATGGATG-A--A-AT------------TTA-----------ATAA-C----A-TTT-G-TG-AAAA-T---AAACTG--GGAGAT-GATAAC--ATG-A-ATATTAACATGACC-ACG-G-T---GA---ATtactaaaccggatcgcaatctaagtcagactgaccggatcgcggctcttcttgattttcaaaacaaattcctctttaaatgtgtgaattcaccgtggtcatgttaatattcatgttatcatctcccagtttattttcacaaatgttattaaatttcatccatgtatgatcaccatgacataaaaactagacccaaatcatgtaaattgcaatgtagtttaggtgccctgatcagacattctgacatccactctcactgcatttgg
gi|13 : gttgtatcatggtgcggatttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaagatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgctaggcatattcaaatactaaaccggatcgcaatctaagtcagactgaccggatcgcggctcttcttgattttcaaaacaaattcctctttaaatgtgtga-TTTGGAATTGCCACGCGG-TGTTCAA---T-AATTC-ATTTACATACCATAG-TTTACA---------------AATACATGTAGTATAATTATGCAAATGATCGTTCCA-CC-ACTGA-TGTATCGCTAGTTA-TTGTA
gi|13 : tgttgtatcatggctgcggagttttccctttatcaaaagtgCCAAATG---CAGTGAGAGTTGGATG-TC--AGAATG--TCTGATCAGGGCACCTAAACTA-CA-T-----------TGGCAATTTACA--------TG-----AATTAG------GGTCT-AG-----TT---------TTAT-------------------------------G-------------------CATG-C---GATC-AT-ACATGGATG----AAATTAT--GA------AT-AAC----ATTTT-G-TG-AAAA-T---AAACTG--GGAGAT-GATAAC--ATG-A-ATATTAACATGACC-ACG-GTG---AATTCACACA-T-TT-----GTGAA-tacttctaaaaccggatcgcaatctaaagtcagactgaaccggatcgcggctcttcttgattttcacaaatgtgtgaattcaccgtggtcatgttaatattcatgttatcatctcccagtttattttcacaaaatgttattcataatttcatccatgtatgatcgcatgcataaaactagaccctaattcatgtaaattgccaatgtagtttaggtgccctgatcagacattctgacatccaactctcactgcatttgg
gi|14 : tgttgtatcatggctgcggagttttccctttatcaaaagtgtacaataactagcgatacatcagtggtggaacgatcatttgcataattatactacatgtatttgtaaactatggtatgtaaatgaattattgaacaccgcgtggcaattccaaatacttctaaaaccggatcgcaatctaaagtcagactgaaccggatcgcggctcttcttgattATCA--TGACTAGTAAGGAA--TATAATATCTACAAT---------G-TGG--TTA-TT-TCGTGATTGTT------TAAT--TACAACGT-TGAAAA-------G--TTTTGTCAG--AGGATCACTTCGG--TATT-TTGCTTTTCTCATCTTGAAAGC------TTATCTCGCAGTAC----TAACCCGATTG--TCGGTACAAGT-GGATGCCC--AGAATG--TCTGATCAAAGCACCTCAAC-------A--------A-TGAA------CAC-------TG-----G-----------------TG-----TT---------TTA--------------------------CACAA-
gi|15 : tgataaaatcaattcatcataatcatcactgaataaaaggtgcaaactcaaaAAATTATCAAGTGG-TCTTCAAAAAT-A--T--ATTTACACAGCACAG-TTTA-AATTTAAAAAACCCCCAA----------AAAGC-ATAAAAATTATTATTCCG-CCCACTGG-TGCATCCCTAGTTA-TTGTAacaataataagctattggatttttatatcggtgtatcttgatttatttggacaaaggacggagaatcgtgcttcgcactcgtcatcacccttcttccaaataaatcaagatactccgatacagatatacaaaaactgatact
gi|15 : ccatcatggccgtggtgtttttccctttataaaacgtgA-TG--------A-TAAT------TA--------TA-----A----G------GATTT-TA-----TT---------TTAT-------------------------CACAA-G-------------------CATG-C---ATTG-A--A-ATTGA------AA-TAAA--TC------AC-A-T----ATTTT-G-TA-CAATGTAGAAAAATGCAGGATAC----------TA-G--TATCAACTTGGCC-GCG-G-GCCTAA---AT----C-TC-----CTGAA-TTTCGACTGGGACTTTACAAATCT--atcgggctcttcttgattttcaacacattcagatttgtaaagtcccagtcgaaattcaggagatttaggcccgcggccaagttgatactagtatcctgcatttttctacattgtacaaaatatgtgatttatttcaatttcaatgcatgcttgtgataaaataaaatccttataattatcattaaataaaaaacagtagaaatcgccaatgttcatagttgaggtgctcgtatcagacattctg
gi|15 : ccatcatggccgtggtgtttttccctttataaaacgtgtacaataactagggatgcaccagtgggcggaataataatttttatgctttttgggggttttttaaatttaaactgtgctgtgtaaatatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcC--AGAATG--TCTGATACGAGCACCTCAACT---------------A-TGAA------CAT-------TG-----G----C------GATTTCTACTGTTTT---------TTAT-------------------------taaataaaaaacagtagaaatcgccaatgttcatagttgaggtgctcgtatcagacattctg
gi|17 : ccatcatggccgtggtgtttttccctttataaaacgtgtacaataactagggatgcaccagtgggcggaataataatttttatgctttttgggggttttttaaatttaaactgtgctgtgtaaatatatttttgaagaccacttgataatttatcgggctcttcttgattttcaacacattcagatttgtaaagtcccagtcgaaattcaggagatttaggcccgcggccaagttgatactagtatcctgcatttttctacattgtacaaaatatgtgatttatttcaatttcaatgcatgcttgtgataaaataaaatccttataattatcattaaAATCCATGA--TTCGA-TTTAGAC-------GTATTTGAAATCATCATATGGAG-TTCAT---T-AACTT-ATTTACACATCACAG-TTTACA---------------AA----------ATGAT-ATGCAAATGATAGTTTTC-CCCACTCC-TATATCTCC
gi|17 : atatatacatcaactagagatata-C---GGTG-A--T-ATTGA------AA-TGAA--AC------AT-A-C----ATTTT-A-CG-AAAT-T---AACTTA--GGAGGT-GAAAGA--ATG-G-ATATCGACATAACC-CTG-G-G---CC---TTG-A-TGTC-----ATGAA-TTTTGACTGCGAttcttgctttttaacacgttttcattttacatttgtgaattcgcagtcaaaattcatgacatcaaggcccagggttatgtcgatatccattctttcacctcctaagttaatttcgtaaaatgtatgtttcatttcaatatcaccga
gi|18 : atatatacatcaactagagatataggagatataggagtggggaaaactatcatttgcatatcattttgtaaactgtgatgtgtaaataagttaatgaactccatatgatgatttcaaatacgtctaaatcgaatcatggattttcttgctttttaacacgttttcattttacatttgtgaat-TTTGAAATTGTTATGCGA-TGTTCAA---T-AATTC-ATTTACACAGCACAG-TTTT-A---------------AG----------ATGAT-ATGCAAATGATGGTTCCG-CCCTCTGG-TGTATCTCTAGTTA-TTGTa
gi|18 : ttttatatggatatggtggggtttttcctttgtcaaaagtggC------AC-A-C----ATTTT-G-TG-AAAT-C---AAACTG--GGAGA------------------ATCAACATGTCC-GCG-A-G---CCT--ATA---T-TC-----GTGAA-TTTTGATTGGAACCTCACACAtacatgtagttctaaaccgaatcgtggctctttcttgattgtgtgaggttccaatcaaaattcacgaatataggctcgcggacatgttgattctcccagtttgatttcacaaaatgtgtgatg
gi|19 : ttttatatggatatggtggggtttttcctttgtcaaaagtggacaataactagagatacaccagagggcggaaccatcatttgcatatcatcttaaaactgtgctgtgtaaatgaattattgaacatcgcataacaatttcaaatacatgtagttctaaaccgaatcgtggctctttcttgatTATGATCT--T-TAG--TTA-TT-GCAGGATT-TT------AAA-------------GAAAAT-TCATG----TTCGTCAG--GTGATCGCTTGGGTATATC-TTCCATTTGCCG-------------------CCTCGCACTACCCGGCCGCCCAAAGA--ACGGTGAGAGT-GGATG-TC--AGAATG--TCTGATTAGGGCACCTAAACTA-TA-TG--------A-TGAatg
gi|2 : tcaaatcatgtaaaAGAGAATTCTCGTAA-GAACCATTCAATC-AATCCGATGAGTTAACAAGGTA-AACCAATTGCATTGAAAATCCCCACAACACTTA-CATAATCCTTACGAATACCTGT-CATGTGACCAGTTCT-TGC--TGATTATTTAAA-AACTTGCTTTCCACCT--TCACCAATTAGAAAT-TGCAATAACTGTCATATGACCCGTG-TGG--TTC-TT-GCGTTA-----------TACC--TCTCCCAATTGAAAAT-TCAAGGTTTTTGGTCAACTTTGATCACTCGGG--TATCATACCACTTCCCGTC----AATCAA-TGTTTATCTCGgggtctgactggccacgtttggacgaagggcggaaactcgtgcttttcactcgtcaccagctgtttacaagaagtcaggat
gi|20 : aataatagtttattgtatatttatttcggtgtatcgggattatttgaacgaagggcggtgacgagttgcggagcacgaaattctccgccctatcgcttccaaataaaatcaagactacaccgaaataaagttcaataaacttacttgttatcaagccaatagaaacttgctttatcatgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgacgatttcaccgatagcatgacaatcgcgggccgtggacgaggaatcacgttgggttcaccctacaacatgtttttgagtcaaatttactacgaaaggcccatgtgttttacaagtacgcactgccatgtcttaaaaatcttattcgtttttttattattgtaataaataattaaaggaactttaaaagattctatccttgtatataagcttttacaattcttcacttgacggacccacgtattgttgtttttcgaGGTCACGAGGATTTGA-TTTTGAT--GAAATTGACGAATCACACATTTTGTGAATTTAAACTGGTCCA-------------GAAGAC-----------------------GATACTAAC------ATGACCA------CGGGCCTA--------CAATTCATGAAT---------------------T-TTTGAAATTGTCACGCGG-TATTCAA---T-AATTT-ATTTCCACAGTTCAG-TTTC-A---------------A-------------AGT-ATGCAAATGATGGTTCCG-CCCACTGGTTGTA
gi|21 : CTCAC-TTGTATCA--TGACCAATTAAAAAAGTTTGATGTCTGTCATATGACCTT-G-TGGCTTTC-TT-GCGTGATT-TT------TAAT--TACCCCAA-T-AAAATATCAAGT--TTTTGTCAG--GTGATCGCTCcactttggacaaagggaaaacaccacagccatgatacaat
gi|26 : AC-----TTGGATACTAACTAAAC-ATGACCACACCG-CGGGTCTAATAGTATGCAATCCCTGAATTTTGA-CCTAGAC-------CT-TTTGAAATTGTCACGCGG--------------------TTTACACAGCACAGTTTTA-A---------------AA----------ATAAT-ATGCAAATGGGAGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTAcaaatcaatatttatttcgctgtatcttgcggaatttagtgtttgcacccgagacaacacgtcgtctacttaaattaagatacaccgaaataaatatacaataactaatact
gi|28 : ATTTTGA-CCGAGAC-------CT-TGTGAAATTGCCACGCGG-TATTCAA---TGA--TTGATTTACACAGCACAG-TTTA-A---------------AA----------ATAAT-ATGCAAATGGCCGTTCCG-CCCACCGG-TGTATCTCCAGTTA-TTGTAcacttttaacaaagggaaaacaccacagccataatacatt
gi|3 : cctGAGAGAAT---CGTAA-GAACCATTCAATT-AAT-CGATGAG-TAACAAGATAGAACGAAT--CA-TGAAAAT--CCA-AA---TTACCATAATC--TACG-ATACCTGTCCATGTGA-CAGTTCTCTGCAGTGA-TA-TT--A-AACTTGC--TCCACCAATTG--CAATTAG-AA--TGGCATAA-TGTCATAATACCC--GTTGG--TTTATTAGCTTG-TT-TT------T-AC--TA--CCAA-TGAAGAT-T--AAG--TTTGGTCAA--TTAACTA-TCAGG--TA-C-TA-CACTTCCCG-C----AAGC-ATTGTTTATTTCACcactattaacaaaggtaaaacaccacagccatgatacac
gi|30 : tatagttattgtatttttatttcagtgtatatttaattcattttggatcagagggcggtgacgagtgcggagcacggttctcgccttcgtcaaaataaatcagtacacggaataaatattaaatcttacttgtatccaagccaatagaaggtgctttttcatgaagaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaaccccgaagagtcacgatacatgacatgcggcggacgagacatcgtgaaaagcaaatgcaaagtggtcacctacaaatgtcatttgagtcaaatactacgaagtccatggttttacaagtagcgctcatgtctttaaaaatcttattacgtttattttattgtaatggataatttaagattttaaaagattttatacccttgtataagatttgacaattttttcattgacggacacgggtattattggttttcGAATTTTGA-CCTAAAC-------CT-TTTGAAATTGTCACGCGG-T-TT------------------ACACAGCACAG-TTTA-A---------------AA----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|32 : cATTTTGA-CCGAGAC-------CT-TTTGAACGTGTCACGCGG-TATTCAA---TTA--TTTATTTAGACAGCACAG-TTTA-A---------------AA----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTAcacttttaacaaagggaaaacaccacagccatgatacaat
gi|36 : cCACGCTG-TATTCAA---T-GATTT-ATTTACACGGCACAG-TTTA-A---------------AA-----------TAAT-ATGCAAATGGGCGTTCAA-CCCACTGG-TGTATCTCacaaagggaaa
gi|39 : AACTGTCATATGACCC--G-TGG--TTC-GT-GCGTGATT-TTTACATGTAAC--TACCCCAA-TGAAAAT-TC-AGG--ATTGGTCAG--TTGATCACTaaaggtaaaacaccacagccatgataaaa
gi|4 : GAGAGAATTCTCGTAAAGAACCATTCAATCTAATC-GATGAGT-AACAAGATA-A-CCAAT-GCAT-GAAAATCCC-ACAA-ACTTA-CATAATCCT-ACG-ATACCTGT-CATGTGACCAGTTCT-TGC-GTGATTA-TTAAA-AACTTGC-TTCCACCA--TGACCAATTAGAA---TGCAATAACTGTCATATGACCC--G-TGG--TTC-TT-GCGTGATT-TT------TAAC--TACCCCAA-TGAAAAT-TCAAGG--TTTGGTCAC--TTAATCACTCAGG--TATC-TACCACTTCCCGTC----AAGC-A-TGTTTATTTCGCACTAC----CCGCCCAAATG--TCGGTGAGATT-GGATG-TT--GGATCG--TTTAATTTGGGCACCTAAACTA-TA-TG--------A-TGAC------CC--------TG-----G----G------GATTT-TA-----TT---------TTAT-------------------------CACAA-G-------------------CGTG-C---GATG-A--A-ATTGACG----AA-TTAC--GT------AT-A-T----ATTTT-G-TGTAAAT-T---ATACTG--GGAGAC-GATAAC--ATG-G-ATATCAACATGACC--CA-G-G---AA---ATA-G-T-TT-----GTGAA-TGTTGACTGGGACCTTGCATATCT--ACG-TGCAA-T-----TTT---TATTTGATG-ATGATCACGAGGATTTGA-TTATGAT--GAAATTGACGAATCACTCATTTTGTGATTTTAAACTGGTCCA-------------GGAGACG----AT-----AAC-----TTGGGTACTGAC------ATAACCACG-CCGCGGGCCTAATAGTATGCAATTCATGAATTTTGA-CCTAGAC-------CT-TTTGAAATTGTCACGCGG--------------------TTTACACAGCACAG-TTTA-A---------------AA----------ATAAT-ATGCAAATGGGCGTTCCG-CCCACTGG-TGTATCTCCAGTTA-TTGTA
gi|42 : C--ATG-G-ATATCAATGTGACC-ACG-G-GG--AA---ATA-G-T-TC-----GTGAA-TTTTAACTGGGACCTTGC----------------A-T-----TTT---TATTTCATG-ATG
gi|44 : G-CCCACTAG-TGTAACTCGAGCTA-TTGTA
gi|5 : ATTGTCATACAA-TCTTGAA---T-AATTT-ATCTACACAGCACAA-TTTA-A---------------AA----------TTAAT-ATGCAAATGATTATTCTA-TCTACTGA-TGTATTTCTCTTCA-TTGTAcacttttaacaaagggaaaaaaaccacagccatgatacaaa
gi|5 : gtattatgactgttgtttttgtccctttatcaaaattgATAA-TCAAT-AGCTTAC-TTGTAACT--TGGCCAAATAGAAA--GATGATATCTGTAATATGGCCT--G-TGG--CTA-TT-GTGGGA---TT------T--C--TA------------AT-TTTATG--TTT---------CGA------AAG--TATT-T-CC-CTTTTCGCT----AAGC-A-TGTATTTATCGCACTAC----TCCCCCAAATA--TCGGTGAGAGT-GCACG-TC--AGAATG--TGTGACCAGGACACCTAAACTAGTA-CG--------A-TGGTTTA---CA--------TGATTTCG----GTCTACAGTTTT-TA-----TTCCATAA---TGAT-------------------------CACGA-GGATTTGATTTGATGAAAAACATG-A---GATG-G--G-ATTAATG----AA-T--------------C-A-C----ATTTT-G-TG-AAAT-T---AAACTG--GGAGAT-AATAAA--ATG-G-ATATTCACA-GGCA-ACG-G-GCCTAG---AT----T-TT-----AAGAA-TTTTGACTAG-----TGCTTCTCC--AT--TTCAA-TAAGGATTT---TATTTcacccacatacttcttttaagcgagccgcggctcttctttatttaaaaaataaaatccttattgaaatggagaagcactagtcaaaattcttaaaatctaggcccgttgcctgtgaatatccattttattatctcccagtttaatttcacaaaatgtgattcattaatcccatctcatgtttttcatcaaatcaaatcctcgtgatcattatggaataaaaactgtagaccgaaatcatgtaaaccatcgtactagtttaggtgtcctggtcacacattctgacgtgcactctcaccgatatttgggggagtagtgcgataaatacatgcttagcgaaaagggaaatactttcgaaacataaaattagaaatcccacaatagccacaggccatattacagatatcatctttctatttggccaagttacaagtaagctattgattatttatttcggtgtgtcttgatttatttggacgaagaacggagactcgtgtttcgcactctctaccactttttgtccaataaaaccaagatacaccgaaataaataatagtaaga
gi|6 : gtattatgactgttgtttttgtccctttatcaaaattgtacaatgaagagaaatacatcagtagatagaataatcatttgcatattaattttaaattgtgctgtgtagataaattattcaagattgtatgacaatcacccacatacttcttttaagcgagccgcggctcttctttatttaaaG--TTGATCACTCGGG--TATC-TACCATTTCCCGTC----AAGC-A-TGTTTATCTCGCACTAC----CCGCCCAAACG--TCGGTGAGAGT-GGATA-TC--GGATCG--TTTAATTAGGGCACCTAAACTA-TA-TG--------A-TGAC------CA--------TA-----G----G------AATTT-TA-----TT---------TTAT-------------------------CACAA-G-------------------CGTG-C---GATG-A--A-ATTGACA----AA-TTAC--GT------AT-A-T----ATTTT-G-TG-TAAT-T---AAACTG--ATGGAC-GATAAC--ATG-G-ATATTATCATGACCAAGG-G-G---AA---ATA-G-T-TA-----GTGAA-TTTTGACTGTGACCCTGCATATTTAAA---TGCAA-T-----TTT---TATTTCATG-ATGATCACGAGGAGTCGA-TTATGAT--GAAATTGACGAATTGCACATTTTGTGAATTTAAACTGGTCCT-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATGACCA------CGGGCC------TATGCAATTGATGAACTTTGA-CTAAGAC-------CT-TTTGAAATTGTCACGCGG-TATTCAA---T-GATTT-ATTTACACAGCACAG-TTTA-A---------------AA----------ATAAT-ATGCAAATGGGCGTTCCG-CCTACTGG-TGTATCTCCAGTTA-TTGTAttatttcggtgtgtcttgatttatttggacgaagaacggagactcgtgtttcgcactctctaccactttttgtccaataaaaccaagatacaccgaaataaataatagtaaga
gi|7 : C--TACCCCAA-TGGAAAT-TCAAGG--TTTGGTCAG--TTGATCAATCGGG--TAAT-TACCACTTCCCGTC----AAGC-G-TGTTTATCTCCCATT----------------------GTGAGAGT-GGATG-TA--GGATCG--TTTAATTAGGGCATCTAAACTA-TA-TG--------A-TGAC------CA--------TG-----G----G------GATTT-TA-----TC---------TTAT-------------------------CACAA-G-------------------CGTG-C---GATG-A--A-ATTGACG----AA-TTAC--GTTATCGTAT-A-T----ATTTT-G-TG-TAAT-T---AAAATG--GAAGAC-GATAAC--ATG-G-ATATCAACATGACC-ACG-G-G---AA---ATA-G-T-TA-----ATGAA-TTTTGACTGGGACCTTGCATAGTT--AAA-TGCAA-T-----TTT---AATTTCATG-ATGATCATGAGGATTCTA-TTTTGAT--GAAATTGACGAATCGCACATTTTGTGAATTTAAACTAGTCCA-------------GGAGACG----AT-----AAC-----TTGGATACTAAC------ATAAC--C--C--CGAA-CTA-----ATGCAATTGATGAATTTTGA-CCG---C-------CT-TTTAAAATTGTCACGCGG-TATTCAA---T-GATTT-ATTTACACAGCACAG-TTTA-G---------------AA----------ATAAT-ATGCAAATGGGCGTTCCG-CCcactttttacaaagggaaagcaccacagccatgatacaa
gi|9 : atTGGTCACGAGGATTTGA-TTTTGAT--GAAATTGACGAATCACACAT
gi|9 : -TGAC------CA--------CG-----A----G------GATCT-TA-----TT---------TTATCACAAGCATGCGGTGAAATTACGTACACAA-C-------------------AGTG-A---GACG-ATAA-ATGGATGTCAAAA-CGAC--GCGGGA--AA-A-C----AGTTT-GGTG-AATT-T---TGACTG--G----------ACCTATGCA-ATATTT-TATG-CC-ACG-G-G---GG---AAA-G-------------AA-TTTTGACTGGGACCTTGCATATTT--A---TGCAGGT-----TTTATATATTTCATG-ATGATCACGAAGATTTGA-TTTTGAT--GAAATTGACGAATCACACATTTTGTGAATTTAAACTGGTCCA-------------GGAGACA----AT-----AAC-----CTGGATACTAAC------ATGACCAC--C----GGTC------TATACAATTGATGAATTTTGA-CGGAGACATTTATAAT-TTTGAAATTGTCACGCGG-TATTCAA---T-AATTT-ATTTACACAGCACAG-TTTA-A---------------AA----------ATAAT-ATGCAAATGGTGGTTCCG-CCTACTGG-TGCATCTCCAGTTA-TTGTAcgaggatcttattttatcacaagcatgcggtgaaattacgtacacaacagtgagacgataaatggatgtcaaaacgacgcgggaaaacagtttggtgaattttgactggacctatgcaatattttatgccacgggggaaagaattttgactgggaccttgcatatttatgcaggttttatatatttcatgatgatcacgaagatttgattttgatgaaattgacgaatcacacattttgtgaatttaaactggtccaggagacaataacctggatactaacatgaccaccggtctatacaattgatgaattttgacggagacatttataattttgaaattgtcacgcggtattcaataatttatttacacagcacagtttaaaaataatatgcaaatggtggttccgcctactggtgcatctccagttattgtacactttt
23 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AGTAATAGTTATTGTATATTTATTTCGGTGTATCTCGATTTATTTGGACGAAGGGCGGTGACGAGTGCGGAGCACGAGTTTCCGCTCTTCGTCCAAATAAATCAAGATACTACGAAATAAATATTCAATAACTTACTTGTATCAAGGCCATTAGAAACTTGTTTTTATCATGACAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGGGCCGTGGACGAGAATTTATATTTTGTCATGAACGCAAATGCACGTGGTCACCCTACAACATGTTTTGAGTCAAAGTATTACGAAGTCCATGTGTTTTACAAGTACTTGCCATCTTATTCCGTTTTTTTATGTAATAAATAATTAAATACCTTTAAAAGATTTATCCTTGTATATAAGATTTTGC
Unaligned ( gi|16 ): CAAATAAATCAAGATGCACCGAAATAAAAATTCAATAACTTACTTGTATCCAGGCCAATAAAAACTTGTTTGTATCTTGACAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCGGGCCGTGGGCGAGAATTTATATTTTGTCGTAAAAGCAAAAGCACGTGGTCACCCTACAGCATGTTTTGAGAAGTATTTCGAAGCCCATGTGTTTTACAAGTAAGCGCTGTCATATCATGTATTAAAAAAAATCTTATTCCATTTTTTATTGTAAAAAAAAAAACTTA
Unaligned ( gi|22 ): TTTTGTCGTGTAAGGAACAACACGTGGTCATCTTACAGCATGATTGCTAAGTCAGTGTGTTTTACAATTACTCGCTGCTATATGTCTAACTCTTATTCCGTTTTTCTTTTCTCTCAAATTATTGTTCTAAAAAGAAGAACTTCAGATGTTTGAGTTGTCTAGTCGCCATTGACGGACCACGTGCTATTGTTTACGAATGAATTCTCTTAAACAACCATTCAATGCGAT
Unaligned ( gi|23 ): GCCGTTTACCAAGGAATTTCACTAGTCTTGTTCGTGTAGCAACCACACATGGTCACCTCAACGTTTTTGAGTAAAATTAGGTATAGAAGTTCTGTATTTTACATACGGGCACTGCATGCATTAAAAAAAGTCTTATTCCATTTTTTCTTTTGTCTAGAATTCTGTAATAAGAAAAACGACTCAGTCCATCCTTGGTATCATAAGATTTACTACCTTTACTTG
Unaligned ( gi|24 ): GTACAGTGCGCATTTTATCATGTCTTTAAAAAGTCTTATTCCATTTTTCTTTTATTTCAGATAGTTGTAATAGAATAAAGAACATTAAATTATTCATTCCTGTATTTAAGATTTTACTATTTTAGTTTTAAGATTTTACTATTTTAGTTTACTAGTCGTCATTGACGGACCACGTGTTGTTGTTTACGTTTGAATTCACCATCACTCATTCCGATGA
Unaligned ( gi|25 ): CCTGGCCGTGGAGGAGAATCTATATTTTGTTGTAAAAAGCAAAAACACTTGGCCAATCTACAGCATGTTTTGAGTCAAATTATTACGAAGCCCATGTGTTTTACAAGCATGCGCTGCCATGTCTTAAAATTTTTATTGTAATAAATAAAGAACTTCAAAAGATTTATCCTTGTATATAAGATTTTACAATGCTACATTAACGGAC
Unaligned ( gi|27 ): CGGTCCGTGGACGAGAATTCATATTTCATCGTAAAAGCAAAAGCACGTGGTCATCCTAGCCTACAGCATGTTTTAAGTCAAATTATTACGAATCCCATGTGTTTTACAAGTACAAGCTGTCATGTCTTTAAAAAAATCTTATTACGTTTTTTATTGTAATAAAACTTCAAAAGATTTATCCTTGTATACAA
Unaligned ( gi|29 ): ACGTGACAGTATGACTGGGGCTTTACGAAGTCCCTAGTTTAACAATTACGCGCTGTCATGTCTTGAAATATTCTTATTTCGTTTTTCTTTCATCTCAAATTATTGTTATAAAAAAGAAATTCAATATTAGAATATATTCGTCATTGACA
Unaligned ( gi|31 ): TATAATTATTGTATATTTATTTCGGTGTATCTTGGTTCATTTGGGCGAAGGTGGTGACAAGTGCGAAGAACGAGTCGTGTCCTTTCTCCAAAAAACAAAAATCAAGATACTCCGAAATGAACATTCAATACTTATTAATAT
Unaligned ( gi|33 ): GATTACGTGGCACATGAAAAAATATAATTGATCATGAGTAGGATTTGGACGAAGGGCGGGAACTCGTACTCGTCACCGCCTTTTTGGATAAGTCAAGATACACCTAAATAAATACACAATAGCTGTTACG
Unaligned ( gi|34 ): TTATTCGGTTTTTCTTTTATCTCAAATTATTGTAAAACAAAAAACTTCAAATGATCCATTCCTATATATAAGAGTTTGCTAGTCGCCGTTGACGGACCACGTTTTGTTACTCGTAAATGGCCATTCCGT
Unaligned ( gi|35 ): TACTACGAAGCCTATGTGTTTTACAAGTAGCGCTGCCATGTCTTAAAAAATCTTGTTAAAAGTTTTTATTGTAATAAATAATTATGTATATAAGATTTTACAATTCTTCATTGA
Unaligned ( gi|37 ): AACAGTTCTTGTATATTTATTTCGGTATACATGTATCTTGATTTATTTGGACAAAGTGTAAAACACGAGTCTCCGCTCTTTGTGCAAATAAAGCAAGATAC
Unaligned ( gi|38 ): GGCGGTGACGAGTGTGGAGCACGAGTCTCAACCCTTCGTCCGAATAAATCAAGATACACCGAAATACATATCAATAACTTACTTGTATCAAGGCCA
Unaligned ( gi|40 ): AGTAATAGTTATTGTATATATTTTTCGGTGTATCTTTTTTTATTTGGATGCAGGGCGGTGACGTGTGCGGAGCACAA
Unaligned ( gi|41 ): GAGGCTCGTGCTTCGCACTTGTCACCACTCTTCGTCCAAATAAATCAAGATACATAAATATACAGTAGCTATTACT
Unaligned ( gi|43 ): ACCGAAATAAATATTCAATAACTTACTTGTTTTAAAATAGGCCAATAGAAACTTGCTTACAAATATCATGAC
Unaligned ( gi|45 ): CGTCCAAATAAATCAAAATACACCGAAATAGATATATAACATAACTGTT
Unaligned ( gi|46 ): CGCACTTGTCACCGCCTTTCGTCCAAATAAATCAAGATACACCG
Unaligned ( gi|47 ): AAATAAATCACATTCTCATACTCCTCTGCCAACGATT
Unaligned ( gi|48 ): TTTATTTGGACGAAGGGCGGAGACTCGTGTGTC
Unaligned ( gi|49 ): ATAGGACGTTTTAAACATGGTACGTGCTTAATT
Unaligned ( gi|50 ): CGAAACGTGACGTGTGACTGGGGCTTTACAAA