lowQualScore : 11111111111111111111111111111111
lowQualScore : 333333333333333333333333 1111111 11 22222222222222222222222222222222 5555555555555555555555555555555555555555555555555555555555555555 2222222222 11111111 11 22222222222 111111 2 1111 111 222222 1111 111111 11 11 1 2222222222 11 1 1 44444444 5555555555555555 1 1
lowQualScore : 5 0 44 9 33 2 999999999999999999999999 6 3333333 6666 44 4 11111111111111111111111111111111 9999999999999999999999999999999999999999999999999999999999999999 55 7777 3 1111111111 7777 333 55 1 66 9999 8888 99999999 888 5 5 666 33 66 66 99999999999 5 999999 1 2 0 1 2222 000 555555 2222 5 5 5 7 111111 6666 00 555 33 5 5 444 2 5 9999999999 0 11 0 5 2 2 2 11111111 9999999999999999 6 3 2
lowQualScore : . . .. . .. . ........................ . ....... .... .. . ................................ ................................................................ .. .... . .......... .... ... .. . .. .... .... ........ ... . . ... .. .. .. ........... . ...... . . . . .... ... ...... .... . . . . ...... .... .. ... .. . . ... . . .......... . .. . . . . . ........ ................ . . .
lowQualScore : 1 6 22 9 99 9 222222222222222222222222 3 3333333 9999 44 0 00000000000000000000000000000000 9999999999999999999999999999999999999999999999999999999999999999 00 7777 6 0000000000 7777 777 00 4 11 4444 3333 33333333 888 0 0 888 44 99 99 00000000000 0 222222 0 2 9 4 1111 000 777777 1111 7 7 7 3 555555 1111 77 000 88 0 0 444 5 0 9999999999 1 00 0 0 0 5 5 00000000 8888888888888888 0 3 0
consensus : GTTGATGGCTTAACAACGATTNTGATTGGACGAAAAATTC-TTAT--GA-TTTCT-TAAT-----T--AAA-AAA-AAATTTGGT------GC---GGGAGTTCATCTGC-AC--TA-AATACTC--AG--------CC---GGGACTACTTTTCTCNN---G----AATGCGTCTT------A--CG--CT---ANTT----T-----------------TA--G----AAC-GGGA--------ATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTNG------TTTGAATTGTTTTTT-ATTGC-TACTAAAAANTAA--ACA--AA-C-CGTGTA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATGAGGG-CTTCGAGATCCGACATAT----CC---TA--G---AGT----A-TCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCACTGGCGAAAGTTGCCCGTCATTCC---TCCTC----------T-----GCTGTGTCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCGTTTATCTCTAAT
Reference ( gi|1 ) : GTTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GA-TTTCT-GAAT-----T--AAA-AAA-AAATTTAGT------GC---GGGAGTTCACTTGC-AC--TA-AATACTCGAAA--------CCGTGGGAACTACTTTTCTCAT---G----AATGTGTCTT------A--CG--CT---ATTT----T-----------------TA--G----AAT-GGTA--------ATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTGG------TTTGAATTGTTTTTT-ATTGC-TACTAGAAATTAA--ACA--AA-C-CGTGTA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATGGGGGGCTTCGAGATCCGACATAT----CC---TA--C---AGT----A-TCATGCAAT-CTG-AGATA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCACATTGAGTATCATGTACATTAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGAACCGCGCTGGCGAAAGTTGCCCGTC---CT---TCCTC----------T-----GCTGTGTCAACGTTTCAGCCGCCTTCGTCCTTACAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCTTTTATCTCTAAT
gi|18 : GTT-ATGACTTAACAACGATTCTGATCGGATAAAAAATTC-GTTT--TA-TTTCT-ACAT-----C--AA
gi|4 : atttaatagtatttaaaTTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GA-TTTTT-TAAT-----A--AAA-AAA-AAATTTAGT------GC---TGGAGTTCACCTGC-AC--TA-AACACC------------------GGAACTACTTTTTTCGG---G----AAT----------------------------T----T-----------------TA--G----AAT-GGGA--------ATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAG------TTTGAAATGTTTTTT-ATTGC-TACT-GAAAATAA--ACA--AA-T-CGTGTACATACGAAT-AAAATACAAAATACTAGTATACTGCGCACTGTCTTCGGAGCATTGCTATTCAAGCTCTGAACGATGAGGG-CTTCGAGATCCGACATAT----CC---TA--G---AGT----A-TCATGCAAT-CTG-AGGAA------G----TGCAGCGATAGCA-A---AAAAATATAGGAGCGG-ATCGA-GGAT---CTGATTTT--ATCAGATTGAGTATCCTGTACATGAATGA-CCATATGAATGAAGCGTCCGACAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGTGAAAGTTGCCCGTC---CTTCCTCCTC----------T-----GTTGTGTCAACGTTTCAGCCGCCTTCGTCttttttttttatctgcact
gi|2 : catttaataatctctaaaTGATGGCTTAACAACAATTATGATTGGACAAAAAATTC-TTAT--GA-TTTCT-TGAT-----------------AATTTTTTTTTATAGC---GGGAGTTCACCTGC-AC--TA-AATACTCGAA---------CCG---GAATTACT---------------------GTCTT------A--CG--CT---ATTT----T-----------------TA--G----AAT-GGTA--------ATTTC----CAC-AAAA--TCAATG--CA----AGCGATGAATGTATTAG------TTTGAAATGTTTTTT-ATTGC-TACTAAAAATTAA---CA--AA-C-CGTGTACATACGAAT-AAAATACAAAATA------TACTGCACACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATGGAGGGCTTCGAGATCCGACATGTATACCC---TA--G---AGT----A-TCATGCAAT-CTG-AGGTACATGTAG----TGTAGCGACAGC--A---AAAACCATAGAAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGAAATGAATCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCACTGGCGAAAGTTGAC-GTC---CT---TCCTCATCTGTTGTGTCCCCGGTTGTGTCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCA
gi|3 : ttaaaataatctctaaacTGATGGCTTAACAACACCTATGATTGGACGAAAAATTC-TTAT--GA-TTTCC-TAA------T--AAA-AAA-AAATTT
gi|5 : atttaataatctctaaacTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GT-TTTCT-TAATATTTGT-------------TTTAGT------GC---GGGAGTTCACATGC-AC--TA-AATACTCG-AA--------CC---GGAACTACTTTTCTCAG---G----AATGTGTCTT------A--CG--CT---ATTT----T-----------------TA--A----AAT-GGGA--------ATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAG------ATTGAATTGTTTTTT-ATTGC-TACTAAAAA-TAA--ACA----------------ACGAAT-AAGATACAAAATA------TACTGCGCACTGTCTTCACAACACTGATATTCAAGCTCTAAACGAC-GAGGGCTTCGAGATCCGACATAC----CC---TA--G---AAT----A-TCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC------AAAAACACAGGAGCGG-ATCGA-GGAT---CTGATATC-AATCAGATTGAGTATCATGTGCATGAGTGG-CCATAGGAATGAAGCGTCCGtcttgtgtcttacgctatttttaaaatggggatttccacaaaatcaatgcaagcgatgtgtattaggcctagtttgaattgctttttattgctactaaaaataaacaaaccgtgtctacgaataaaacacaaaatatactgtgcactgtcttcggagcactgctattcaagctctgaacgatgagggcgtcgagatccgacatatcctagactagagcatcatgcaatctgaggtagtgtagcaacagcaaaaaacataggagcgaatcgaggatctgattttaatcagattgagtatcatgtatggaatgaagcgtcctgcacagaaacaccaactgcatgagcaccgcactggcgaaagttgcccgtcattcctcctctgctgtgtcaacgtttcagccgccttcgtccttgcaaacaccatgcaacacgacattgtctcaccacttgacatctttgtttatctctaa
gi|8 : catttaataatctctaaacTGATGGCTTAACAACAATTCTGCTGGGATGAAAAATTC-GCTT--GA-TTTCT-TAAT-----TTAAAA-AAA-AAATC--GT------CC---TGGTGTTC-----------------------AG--------CC---GGGACTACTTTTCTCTG---G----AATTTGTCTT------GTTCC--CT---GTTC----TGATTTAAGCACAAATTATA--G----AAC-GGAA--------ATTTC----TACTATAATTTCATTGTTCATCTGAACAA-A--TGTATTTG------TTTG-AT--TTTTTC-ACTGC-TAC-AAAAA-TAA--ACA--A
gi|16 : atcattcaaatctttaaagTGATGGCTTAAAAACAATTATGACTGGAC-AAAAATTT-TGAT--GA-TTTCT-TCA------T--AAA-AAC-GAATTTAGT------TC---AGGAGTTCAcc
gi|9 : tcatttaataatatttaaacTGATGGCTTAACAGTGATT-TAATTTG------------TT-T--GA-TTTCT-TAAT---------AA-CAC-AATTTTGGT------GC---GGGAGTTCATCTGC-GCTATA-AGCACTC-----------------GGGACTGCTTTTATCTT---A----AA-ACGTCTTCC----C--CGTTCT---AATT----T-----------------TA--GGCCTAAT-TATAGAACCAGGATTTT----TAC-TTGA--TCGTTG--TA----AACAAAA--TGTAT---------TTTG----GTTTTTT-ATTCC-T--TTGAAAATAAATACA--AA-A------A--CAGAAAT-AAAATACAAAATa
gi|11 : taacttttaaagTGATAGCTTA-CAACGATTCTGATTAGATGGAAA-TTCGTTGTTTGA-TTTCT-TAAT-----T--TTG-AAG-A--TTTGGT------CC---GAGAGTTCA------------------TC----------------AGAGACTACCTTTCTCTG---G----AATACATCTTTCA---A--AG--CA---AATT----A-----------------TA--G----AGC-AGGA--------ATTT-----CAT-AAAA--TCATTG--TC----ACCAAAA--TATATTCG------TTTGATTTCTTTTTTCATTG
gi|13 : catttaataattcttaaagTGGTGGCTGAACAAGAATTATGATTGGATAAACAATTC-------GC-TTTCT-GTAT-----C-----------AATTT-------------------TTTATCTGC-AC--T----TA-TC--AG--------TCG------CTACTTTTCTCCT---A----AATGCGTCTTAGTTCCA--CG--TTCGAATTTTATCT-----------------TAAGG----AAC-GGGT--------ATTTC----CAC----A--TCAAT
gi|7 : taataatatttaaagTGATAGCATAACAACAATTTGGATCGGATTAAAATTTG-TT-T--GC-TTTCTCGG-------T--AAA-TGT-TATTTTGGT------CC---CAGAGCACATCTGCAAT--TA-GA-GTTCGAAATTAGTTTTCTCTGG--ACTACGTCTGTCAC---GTTTCAATG----TT------AC-CG--CT---AATT----T-----------------TA--G----GACAGGT-------------------------A--CCAATG--TA----AATAATG--TGT-TTG--------TTAAA-TGCTTTCC-AGTTCATATGAAAAAATAA--ACACGAA-CAAATATA--TAC--AT-ATAATGCAAtt
gi|29 : aatgcatttatcaaaccaaaaagTGATGGCTTAACAACGATT
gi|12 : atttaataatatttaaagATAGTTTAACAATGATTCTGATTGTATGAAAAATTC-GT-T--GA-ATTCT-TAGT-----T---TA-AAA-ACTTTTCGT------AC---GGGAGTTCATCTGC-AC--TCTAATTCTCTAGA----------ATG-----CATCTTCCCCATTTCT----AA----TTTT------AG-CG--CT---AATT----A-----------------TA--G----ATT-GGGA--------ATTTTTGTACAC-AAAA--T
gi|21 : ctttaaaagtcTAACAACAATTACGATTGGACGAATAA-TC-TTAT--GA-TTg
gi|14 : cacttaataatctctaaactgaatgtcTAACAACGATTTTGATTTGATGAAAAAATC-GTTT--GATTTTCT-AAA------T--AAA-AAcat
gi|23 : -----T--AAATAAATAAATACAGT------GCTCCGGGACTTCATCTGC-AC--T-------TCACAG--------CCG---GGACTACTTTTgtctttttactaagctgtcagaactaatttcctgtggaatttgtcttcgttcccgttc
gi|3 : aaTTTTCT-------------TGTGTCTT------A--CG--CT---ATTT----T-----------------TA--A----AAT-GGGG--------ATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAGGCCTAGTTTGAATTGCTTTTT-ATTGC-TACTAAAAAT-AA--ACA--AA-C-CGTGTC--TACGAAT-AAAACACAAAATA------TACTGTGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATGAGGG-CGTCGAGATCCGACATAT----CC---TAGACTAGAGC----A-TCATGCAAT-CTG-AGGTA------G----TGTAGCAACAGC--A---AAAAACATAGGAGCGA-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTAT--------------GGAATGAAGCGTCCTGCAC--AGAAACAC-CAACTGCATGAGCACCGCACTGGCGAAAGTTGCCCGTCATTCC---TCCTC----------T-----GCTGTGTCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACACGACATTGTCTCACCACTTGACATCTTTGTTTATCTCTAA
gi|15 : atttaataatctctaaactgatggcttaacaacacctatgattggacgaaaaattcttatgatttcctaataaaaaaaaaTT----A-----------------TA--G----AGC-GTGA--------ATTTC----CAT-AAAA--TCATTG--TA----AACAAAA--TATACTCG------TTTG-ATTCTTTT
gi|6 : atttcttttttcattgcgtctttccgcgttctaaatttggagcaaa-TACTA-AAATAAA--ACA--AAAC-TGTGTC--TACGAATTAAAATACAAAATA------TACTGCG-ACTGTCTTCCGA-CACTGCTATTCAAG-TCTGACCGATGAGGG-CATCGAGATCCGAC----------------------GT----A-TCATGCAAAACTGCAGGTA------GATGCTGTAGCGACAGC--A---AAAAA-ATAGGAGCGG-ATCGA-GGAT---CTGATTTTTAATCAGATTGAGTATCATGTA---TAG------AT-GGAATG---TGTCCGGCGCCAAGAAACACACAACTGCATGAGCACCGCACTGGCGAAAGTT-CCCGTCATTCC---TCCTC----------T-----GCTATGTCAACCTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACAGCTTGACATCTTCGTTTATTTCTAAT
gi|10 : aagcgatgtgtatT-AAAATACAAAATA------TACTGCGCACTGTCTTTGGGGCATTGCTATTCAAGCTCTGAACGATGCGGG-CTTCGAGATCCGACATAT----CC---TA--G---AGT----A-TCATGCAAT-CTG-AGGTA------G----TGTAGCGATAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATAAATGG-CCATAGGAATTAAGCGTCCGGCAC--AGAAACAt
gi|17 : GGACTTTGAGGCC-----TCT----CCACTTA--C---AGTCTATACTCATGCAGT-ATG----TT------A----CGTCGTTACA-T--A---AAAA-----GGAGCGG-AACGA-GGAT---CTGATTTT-AATCAGATTG
gi|27 : ------G----TGTAGCGACAGC--A---AAAA-TATAGGAGCGG-ATCGA--GAT---CTGATTTT-AATC
gi|22 : ------G----TATAACGACAGT--A---AAAAAAAATGGAGCGG-ATCGA-GGATCTGCTGATTTT-AATCCGATTGAATcga
gi|20 : c------G----TGTAGCGAGAGCCAA---AAAAATATAGGAGCGGCACAGACGGAT---CTGA-TTT-AATCAGAT---GCCCTATCTAC-T--GTGGTTCATAGGAAc
gi|26 : ----TGTAGCGACAGC--A---AAAA---TAGAAGCGG-ATCGA-GGAG---TTGATTTT-AATCAGACTGAga
gi|25 : ----TGTAGCAACTGT--A---TGAAAAAAAGGAGGGG-ATCGA-GGAG---CTGATTTT-AATCAGATTG
gi|19 : a----TGTAGCGAGAGCCAA---AAAAATATAGGAGCGGCACAGACGGAT---CTGA-TTT-AATCAGAT---GCCCTATCTAC-T--GTGGTTCATAGGAA-GAA
gi|24 : ----TGTAGCGACAAC--ATTTAAAG----AGGAGGAA-ATCAG-GGAT---CTCATTTT-TATTAGATTGA
gi|32 : tgtAACGG-ATCGA-GGAT---CTGATTTT-AATCAGAT
gi|31 : AACGG-GTCGA-GGAT---CTGATTTT-AATCAGAT
gi|28 : -ACATTGTCTCACCGCTTGACATCTTCCTTTACCTCTAATc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|30 ): ACAATACAACACTAATCTCCCTAAATGAAGC
Alignments
lowQualScore : 111111111111111 111111111111111 44444444444444 88888888888888888888888888888888888888 111111111111 1111111 111111 1 11111111111 111111 1111 11111 111111 11 1111 11 1 444444444444 1
lowQualScore : 1 7777 33 888888888888888 666666666666666 555 88888888888888 77777 77 33 66666666666666666666666666666666666666 44 44 2 777777777777 0000000 7777 44 44 0 55 8888 5555 2 111111 5 1 4 4 4 4 66 77777777777 4 666666 5 5 2222 44444 5 5 111111 6666 00 444 9 4 4 444 2 9999 00 99 8 0 111111111111 0 2
lowQualScore : . .... .. ............... ............... ... .............. ..... .. .. ...................................... .. .. . ............ ....... .... .. .. . .. .... .... . ...... . . . . . . .. ........... . ...... . . .... ..... . . ...... .... .. ... . . . ... . .... .. .. . . ............ . .
lowQualScore : 0 2222 77 222222222222222 777777777777777 888 99999999999999 99999 11 88 33333333333333333333333333333333333333 66 66 2 111111111111 8888888 1111 77 66 5 55 5555 6666 4 555555 7 2 4 4 0 4 11 00000000000 4 444444 7 7 1111 33333 7 7 555555 1111 00 777 3 7 7 111 4 3333 88 22 0 4 000000000000 0 5
consensus : GTTGATGGCTTAACAACGATTNTGATTGGACGAAAAATTC-TTAT--GATTTCTTAATT--AAA-AAA-AAATTTG-----GT------GC---GGGAGTTCATCTGCACT-AATACTC--AG-CCG---GGACTACTTTTCTCTGGAATGCGTC---------------TT-------------------A-CG--CT--AATTT------------TA-------GAACGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTNG------TTTGAATTGTTTTTT-ATTGC-TACTAAAAA-TAA-ACA--AA-C-CGTGTA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGCGAAAGTTGCCCGTCNTTCCTCCTCT------------GCTGTGTCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCGTTTATCTCTAAT
Reference ( family-2584 ) : GTTGATGGCTTAACAACGATTNTGATTGGACGAAAAATTC-TTAT--GATTTCTTAATT--AAA-AAA-AAATTTG-----GT------GC---GGGAGTTCATCTGCACTAAATACTC--AG-CCG---GGACTACTTTTCTCNNGAATGCGTC---------------TT-------------------A-CG--CT--ANTTT------------TA-------GAACGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTNG------TTTGAATTGTTTTTT-ATTGC-TACTAAAAANTAA-ACA--AA-C-CGTGTA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCACTGGCGAAAGTTGCCCGTCATTCCTCCTCT------------GCTGTGTCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCGTTTATCTCTAAT
gi|1 : GTTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GATTTCTGAATT--AAA-AAA-AAATTTA-----GT------GC---GGGAGTTCACTTGCACTAAATACTCGAAA-CCGTGGGAACTACTTTTCTCATGAATGTGTC---------------TT-------------------A-CG--CT--ATTTT------------TA-------GAATGGTAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTGG------TTTGAATTGTTTTTT-ATTGC-TACTAGAAATTAA-ACA--AA-C-CGTGTA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-GGGGGCTTCGAGATCCGACATAT----CCTACA-----GTATCATGCAAT-CTG-AGATA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCACATTGAGTATCATGTACATTAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGAACCGCGCTGGCGAAAGTTGCCCGTC---CTTCCTCT------------GCTGTGTCAACGTTTCAGCCGCCTTCGTCCTTACAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCTTTTATCTCTAAT
gi|10 : T-AAAATACAAAATA------TACTGCGCACTGTCTTTGGGGCATTGCTATTCAAGCTCTGAACGATG-CGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGATAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATAAATGG-CCATAGGAATTAAGCGTCCGGCAC--AGAAACA
gi|11 : TGATAGCTTA-CAACGATTCTGATTAGATGGAAA-TTCGTTGTTTGATTTCTTAATT--TTG-AAG-A--TTTG-----GT------CC---GAGAGTTCATC----------------AG-------AGACTACCTTTCTCTGGAATACATC---------------TTTCA----------------A-AG--CA--AATTA------------TA-------GAGCAGGAATTTC-----AT-AAAA--TCATTG--TC----ACCAAAA--TATATTCG------TTTGATTTCTTTTTTCATTG
gi|12 : catttaataattcttaaagATAGTTTAACAATGATTCTGATTGTATGAAAAATTC-GT-T--GAATTCTTAGTT---TA-AAA-ACTTTTC-----GT------AC---GGGAGTTCATCTGCACT-----CTA--A-----------------TTCTCTAGAATGCATC---------------TTCCCCATTTCTAATTTTA--G-CG--CT--AATTA------------TA-------GATTGGGAATTTTTGTACAC-AAAA--T
gi|13 : ctttaaaagtcTGGTGGCTGAACAAGAATTATGATTGGATAAACAATTC-------GCTTTCTGTATC--AA---------TTT------------------------TTTATCTGCACT---TA-TC--AG-TCG------CTACTTTTCTCCTAAATGCGTC---------------TTAGTTCC-------------A-CG--TTCGAATTT------------TATCTTAAGGAACGGGTATTTC----CAC----A--TCAATg
gi|14 : taataatatttaaagTAACAACGATTTTGATTTGATGAAAAAATC-GTTT--GATTTTCTAAAT--AAA-AAtt
gi|15 : G--CA--AATTA------------TA-------GAGCGTGAATTTC----CAT-AAAA--TCATTG--TA----AACAAAA--TATACTCG------TTTG-ATTCTTTTgtctttttactaagctgtcagaactaatttcctgtggaatttgtcttcgttcccgttc
gi|16 : atttcttttttcattgcgtctttccgcgttctaaatttggaTGATGGCTTAAAAACAATTATGACTGGAC-AAAAATTT-TGAT--GATTTCTTCA-T--AAA-AAC-GAATTTA-----GT------TC---AGGAGTTCA
gi|17 : tcatttaataatatttaaacC--A---TAAAA---AGGAGCGG-AACGA-GGAT---CTGATTTT-AATCAGATTGa
gi|18 : ggactttgaggcctctccacttacagtctatactcatgcagtatgttacgtcgttaGTT-ATGACTTAACAACGATTCTGATCGGATAAAAAATTC-GTTT--TATTTCT
gi|19 : atttaatagtatttaaa----TGTAGCGAGAGCCAA---AAAAATATAGGAGCGGCACAGACGGAT---CTGA-TTT-AATCAGAT---GCCCTATCTAC-T--GTGGTTCATAGGAA-GAAacatcaattttttttttatctgcact
gi|2 : TGATGGCTTAACAACAATTATGATTGGACAAAAAATTC-TTAT--GATTTCTTGAT------------AATTTT-----TTTTTATAGC---GGGAGTTCACCTGCACTAAATACTCG-AA-CCG---GAATTACT--------------GTC---------------TT-------------------A-CG--CT--ATTTT------------TA-------GAATGGTAATTTC----CAC-AAAA--TCAATG--CA----AGCGATGAATGTATTAG------TTTGAAATGTTTTTT-ATTGC-TACTAAAAATTAA--CA--AA-C-CGTGTACATACGAAT-AAAATACAAAATA------TACTGCACACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATGGAGGG-CTTCGAGATCCGACATGTATACCCTAGA-----GTATCATGCAAT-CTG-AGGTACATGTAG----TGTAGCGACAGC--A---AAAACCATAGAAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGAAATGAATCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCACTGGCGAAAGTTG-ACGTCCTTCCTCATCTGTTGTGTCCCCGGTTGTGTCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCA
gi|20 : ttaaaataatctctaaac------G----TGTAGCGAGAGCCAA---AAAAATATAGGAGCGGCACAGACGGAT---CTGA-TTT-AATCAGAT---GCCCTATCTAC-T--GTGGTTCATAGGAA
gi|21 : TAACAACAATTACGATTGGACGAATAA-TC-TTAT--GATTga
gi|22 : cacttaataatctctaaactgaatgtc------G----TATAACGACAGT--A---AAAAAAAATGGAGCGG-ATCGA-GGATCTGCTGATTTT-AATCCGATTGAATcat
gi|23 : cT--AAATAAATAAATACA-----GT------GCTCCGGGACTTCATCTGCACT---T-CAC--AG-CCG---GGACTACTTTTc
gi|24 : aa----TGTAGCGACAAC--ATTTAAAGA----GGAGGAA-ATCAG-GGAT---CTCATTTT-TATTAGATTGA
gi|25 : tgt----TGTAGCAACTGT--A---TGAAAAAAAGGAGGGG-ATCGA-GGAG---CTGATTTT-AATCAGATTG
gi|26 : a----TGTAGCGACAGC--A---AAAA---TAGAAGCGG-ATCGA-GGAG---TTGATTTT-AATCAGACTGA
gi|27 : ------G----TGTAGCGACAGC--A---AAAA-TATAGGAGCGG-ATCGA--GAT---CTGATTTT-AATCCGA
gi|28 : -ACATTGTCTCACCGCTTGACATCTTCCTTTACCTCTAAT
gi|29 : TGATGGCTTAACAACGATTt
gi|3 : atttaataatatttaaagTGATGGCTTAACAACACCTATGATTGGACGAAAAATTC-TTAT--GATTTCCTAA-T--AAA-AAA-AAATTT
gi|3 : atttaataatctctaaacTTTTCT------TGTGTC---------------TT-------------------A-CG--CT--ATTTT------------TA-------AAATGGGGATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAGGCCTAGTTTGAATTGCTTTTT-ATTGC-TACTAAAAA-TAA-ACA--AA-C-CGTGTC--TACGAAT-AAAACACAAAATA------TACTGTGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CGTCGAGATCCGACATAT----CCTAGACTAGAGCATCATGCAAT-CTG-AGGTA------G----TGTAGCAACAGC--A---AAAAACATAGGAGCGA-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTAT--------------GGAATGAAGCGTCCTGCAC--AGAAACAC-CAACTGCATGAGCACCGCACTGGCGAAAGTTGCCCGTCATTCCTCCTCT------------GCTGTGTCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACACGACATTGTCTCACCACTTGACATCTTTGTTTATCTCTAAtcttgtgtcttacgctatttttaaaatggggatttccacaaaatcaatgcaagcgatgtgtattaggcctagtttgaattgctttttattgctactaaaaataaacaaaccgtgtctacgaataaaacacaaaatatactgtgcactgtcttcggagcactgctattcaagctctgaacgatgagggcgtcgagatccgacatatcctagactagagcatcatgcaatctgaggtagtgtagcaacagcaaaaaacataggagcgaatcgaggatctgattttaatcagattgagtatcatgtatggaatgaagcgtcctgcacagaaacaccaactgcatgagcaccgcactggcgaaagttgcccgtcattcctcctctgctgtgtcaacgtttcagccgccttcgtccttgcaaacaccatgcaacacgacattgtctcaccacttgacatctttgtttatctctaa
gi|31 : atttaataatctctaaactgatggcttaacaacacctatgattggacgaaaaattcttatgatttcctaataaaaaaaaaAACGG-GTCGA-GGAT---CTGATTTT-AATCAGAT
gi|32 : AACGG-ATCGA-GGAT---CTGATTTT-AATCAGATc
gi|4 : TTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GATTTTTTAATA--AAA-AAA-AAATTTA-----GT------GC---TGGAGTTCACCTGCACTAAACAC--------CG---GAACTACTTTTTTCGGGAAT------------------------------------------------------TT------------TA-------GAATGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAG------TTTGAAATGTTTTTT-ATTGC-TACTGAAAA-TAA-ACA--AA-T-CGTGTACATACGAAT-AAAATACAAAATACTAGTATACTGCGCACTGTCTTCGGAGCATTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGAA------G----TGCAGCGATAGCA-A---AAAAATATAGGAGCGG-ATCGA-GGAT---CTGATTTT--ATCAGATTGAGTATCCTGTACATGAATGA-CCATATGAATGAAGCGTCCGACAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGTGAAAGTTGCCCGTCCTTCCTCCTCT------------GTTGTGTCAACGTTTCAGCCGCCTTCGTC
gi|5 : catttaataatctctaaaTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GTTTTCTTAAT-------------ATTTGTTTTAGT------GC---GGGAGTTCACATGCACTAAATACTCG-AA-CCG---GAACTACTTTTCTCAGGAATGTGTC---------------TT-------------------A-CG--CT--ATTTT------------TA-------AAATGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAG------ATTGAATTGTTTTTT-ATTGC-TACTAAAAA-TAA-ACA----------------ACGAAT-AAGATACAAAATA------TACTGCGCACTGTCTTCACAACACTGATATTCAAGCTCTAAACGACG-AGGG-CTTCGAGATCCGACATAC----CCTAGA-----ATATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC------AAAAACACAGGAGCGG-ATCGA-GGAT---CTGATATC-AATCAGATTGAGTATCATGTGCATGAGTGG-CCATAGGAATGAAGCGTCCG
gi|6 : catttaataatctctaaac-TACTAAAATA-AA-ACA--AAAC-TGTGTC--TACGAATTAAAATACAAAATA------TACTGCG-ACTGTCTTCCGA-CACTGCTATTCAAG-TCTGACCGATG-AGGG-CATCGAGATCCGAC-------------------GTATCATGCAAAACTGCAGGTA------GATGCTGTAGCGACAGC--A---AAAAA-ATAGGAGCGG-ATCGA-GGAT---CTGATTTTTAATCAGATTGAGTATCATGTATA------G---AT-GGAATG---TGTCCGGCGCCAAGAAACACACAACTGCATGAGCACCGCACTGGCGAAAGTT-CCCGTCATTCCTCCTCT------------GCTATGTCAACCTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACAGCTTGACATCTTCGTTTATTTCTAAT
gi|7 : aagcgatgtgtatTGATAGCATAACAACAATTTGGATCGGATTAAAATTTG-TT-T--GCTTTCTCGG-T--AAA-TGT-TATTTTG-----GT------CC---CAGAGCACATCTGCAATTAG-------AGTTCG---AAATTAGTTTTCTCTGGACTACGTCTGTCACGTTTCAATGTT-------------------ACCG--CT--AATTT------------TA-------GGACAGG----------TAC--------CAATG--TA----AATAATG--TG--TTTG------TT--AAATGCTTTCC-AGTTCATATGAAAAAATAA-ACACGAA-CAAATATA--TAC--AT-ATAATGCAAt
gi|8 : aatgcatttatcaaaccaaaaagTGATGGCTTAACAACAATTCTGCTGGGATGAAAAATTC-GCTT--GATTTCTTAATTTAAAA-AAA-AAAT-----------------C---G-----TC--CTG------GTGTTC--AG-CCG---GGACTACTTTTCTCTGGAATTTGTC---------------TTGTTCCCTGTTCTGATTTAAG-CA--CA--AATTA------------TA-------GAACGGAAATTTC----TACTATAATTTCATTGTTCATCTGAACAA-A--TGTATTTG------TTTG-AT--TTTTTC-ACTGC-TAC--AAAAATAA-ACA--A
gi|9 : atcattcaaatctttaaagTGATGGCTTAACAGTGATTT-------------AATTT-GTTT--GATTTCTTAAT----AA-CAC-AATTTTG-----GT------GC---GGGAGTTCATCTGCGCT--ATAAGC--AC-TCG---GGACTGCTTTTATCTTAAA-ACGTC---------------TTCC-----------------C-CGTTCT--AATTTTAGGCCTAATTATA-------GAACCAGGATTTT----TAC-TTGA--TCGTTG--TA----AACAAAA--TGTAT---------TTTG----GTTTTTT-ATTCC-T-TTGAAAATAAATACA--AA-A------A--CAGAAAT-AAAATACAAAATcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): ACAATACAACACTAATCTCCCTAAATGAAGC
Alignments
lowQualScore : 33333333333333333333333333333333333333 55555555555555 77777777777777777777777777777777777777 111111111111 1111111 111111 11111111111 111111 1111 11111 111111 11 1111 11 444444444444 1
lowQualScore : 1 7777 33 55555555555555555555555555555555555555 00000000000000 66666 44 55 77777777777777777777777777777777777777 44 44 1 777777777777 0000000 7777 44 44 0 55 8888 5555 2 111111 5 1 4 4 66 4 66 66 77777777777 4 666666 5 5 2222 44444 5 5 111111 6666 00 444 9 4 4 444 2 9999 00 99 8 1 0 111111111111 0 2
lowQualScore : . .... .. ...................................... .............. ..... .. .. ...................................... .. .. . ............ ....... .... .. .. . .. .... .... . ...... . . . . .. . .. .. ........... . ...... . . .... ..... . . ...... .... .. ... . . . ... . .... .. .. . . . ............ . .
lowQualScore : 0 2222 77 55555555555555555555555555555555555555 88888888888888 99999 33 22 77777777777777777777777777777777777777 66 66 7 111111111111 8888888 1111 77 66 5 55 5555 6666 4 555555 7 2 4 4 11 4 11 11 00000000000 4 444444 7 7 1111 33333 7 7 555555 1111 00 777 3 7 7 111 4 3333 88 22 0 0 8 000000000000 0 5
consensus : GTTGATGGCTTAACAACGATTNTGATTGGACGAAAAATTC-TTAT--GATTTCTTAATT--AAA-AAA-AAATTTG-----GT------GC---GGGAGTTCATCTGCACT-AA-TACTC--AGCCG---GAACTACTTTTCTCTGGAATGCGTC---------------TT-------------------A-CG--CT--AATTT------------TA-------GAACGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTNG------TTTGAATTGTTTTTT-ATTGC-TACT--AAAAAT-AA--ACA--AA-C-CGTGTA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGCGAAAGTTGCCCGTCCTTCCTCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCGTTTATCTCTAAT
Reference ( family-2584 ) : GTTGATGGCTTAACAACGATTNTGATTGGACGAAAAATTC-TTAT--GATTTCTTAATT--AAA-AAA-AAATTTG-----GT------GC---GGGAGTTCATCTGCACT-AA-TACTC--AGCCG---GGACTACTTTTCTCTGGAATGCGTC---------------TT-------------------A-CG--CT--AATTT------------TA-------GAACGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTNG------TTTGAATTGTTTTTT-ATTGC-TACT--AAAAAT-AA--ACA--AA-C-CGTGTA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGCGAAAGTTGCCCGTCNTTCCTCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCGTTTATCTCTAAT
gi|1 : GTTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GATTTCTGAATT--AAA-AAA-AAATTTA-----GT------GC---GGGAGTTCACTTGCACT-AAATACTCGAAACCGTGGGAACTACTTTTCTCATGAATGTGTC---------------TT-------------------A-CG--CT--ATTTT------------TA-------GAATGGTAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTGG------TTTGAATTGTTTTTT-ATTGC-TACT--AGAAATTAA--ACA--AA-C-CGTGTA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-GGGGGCTTCGAGATCCGACATAT----CCTACA-----GTATCATGCAAT-CTG-AGATA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCACATTGAGTATCATGTACATTAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGAACCGCGCTGGCGAAAGTTGCCCGTCCT---TCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTACAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCTTTTATCTCTAAT
gi|10 : T-AAAATACAAAATA------TACTGCGCACTGTCTTTGGGGCATTGCTATTCAAGCTCTGAACGATG-CGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGATAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATAAATGG-CCATAGGAATTAAGCGTCCGGCAC--AGAAACA
gi|11 : TGATAGCTTA-CAACGATTCTGATTAGATGGAAA-TTCGTTGTTTGATTTCTTAATT--TTG-AAG-A--TTTG-----GT------CC---GAGAGTTCATC-----------------AG------AGACTACCTTTCTCTGGAATACATC---------------TTTCA----------------A-AG--CA--AATTA------------TA-------GAGCAGGAATTT-----CAT-AAAA--TCATTG--TC----ACCAAAA--TATATTCG------TTTGATTTCTTTTTTCATTG
gi|12 : catttaataattcttaaagATAGTTTAACAATGATTCTGATTGTATGAAAAATTC-GT-T--GAATTCTTAGTT---TA-AAA-ACTTTTC-----GT------AC---GGGAGTTCATCTGCACT------CTA--A----------------TTCTCTAGAATGCATC---------------TTCCCCATTTCTAATTTTA--G-CG--CT--AATTA------------TA-------GATTGGGAATTTTTGTACAC-AAAA--T
gi|13 : ctttaaaagtcTGGTGGCTGAACAAGAATTATGATTGGATAAACAATTC-------GCTTTCTGTATC--AA---------TTT------------------------TTTATCTGCACT----TA-TC--AGTCG------CTACTTTTCTCCTAAATGCGTC---------------TTAGTTCC-------------A-CG--TTCGAATTT------------TATCTTAAGGAACGGGTATTTC----CAC----A--TCAATg
gi|14 : taataatatttaaagTAACAACGATTTTGATTTGATGAAAAAATC-GTTT--GATTTTCTAAAT--AAA-A-------------------------------AGTC--TTTTTACT-AA--GCT----GTCA---GAACTAATTTCCTGTGGAATTTGTC---------------TT-------------------tt
gi|15 : G--CA--AATTA------------TA-------GAGCGTGAATTTC----CAT-AAAA--TCATTG--TA----AACAAAA--TATACTCG------TTTG-ATTCTTTTcgttcccgttc
gi|16 : atttcttttttcattgcgtctttccgcgttctaaatttggaTGATGGCTTAAAAACAATTATGACTGGAC-AAAAATTT-TGAT--GATTTCTTCA-T--AAA-AAC-GAATTTA-----GT------TC---AGGAGTTCA
gi|17 : tcatttaataatatttaaacC--A---TAAAA---AGGAGCGG-AACGA-GGAT---CTGATTTT-AATCAGATTGa
gi|18 : ggactttgaggcctctccacttacagtctatactcatgcagtatgttacgtcgttaGTT-ATGACTTAACAACGATTCTGATCGGATAAAAAATTC-GTTT--TATTTCT
gi|19 : atttaatagtatttaaa----TGTAGCGAGAGCCAA---AAAAATATAGGAGCGGCACAGACGGAT---CTGA-TTT-AATCAGAT---GCCCTATCTAC-T--GTGGTTCATAGGAA-GAAacatcaattttttttttatctgcact
gi|2 : TGATGGCTTAACAACAATTATGATTGGACAAAAAATTC-TTAT--GATTTCTTGAT------------AATTTT-----TTTTTATAGC---GGGAGTTCACCTGCACT-AAATACTCG-AACCG---GAATTACT--------------GTC---------------TT-------------------A-CG--CT--ATTTT------------TA-------GAATGGTAATTTC----CAC-AAAA--TCAATG--CA----AGCGATGAATGTATTAG------TTTGAAATGTTTTTT-ATTGC-TACT--AAAAAT-TA--ACA--AA-C-CGTGTACATACGAAT-AAAATACAAAATA------TACTGCACACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATGGAGGG-CTTCGAGATCCGACATGTATACCCTAGA-----GTATCATGCAAT-CTG-AGGTACATGTAG----TGTAGCGACAGC--A---AAAACCATAGAAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGAAATGAATCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCACTGGCGAAAGTTGAC-GTCCTTCCTCATCTGTTGTGTCCCCGGTTGTGTCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCA
gi|20 : ttaaaataatctctaaac------G----TGTAGCGAGAGCCAA---AAAAATATAGGAGCGGCACAGACGGAT---CTGA-TTT-AATCAGAT---GCCCTATCTAC-T--GTGGTTCATAGGAA
gi|21 : TAACAACAATTACGATTGGACGAATAA-TC-TTAT--GATTga
gi|22 : cacttaataatctctaaactgaatgtc------G----TATAACGACAGT--A---AAAAAAAATGGAGCGG-ATCGA-GGATCTGCTGATTTT-AATCCGATTGAATcat
gi|23 : cT--AAATAAATAAATACA-----GT------GCTCCGGGACTTCATCTGCACT----T-CAC--AGCCG---GGACTACTTTTc
gi|24 : aa----TGTAGCGACAAC--ATTTAAAGA----GGAGGAA-ATCAG-GGAT---CTCATTTT-TATTAGATTGA
gi|25 : tgt----TGTAGCAACTGT--A---TGAAAAAAAGGAGGGG-ATCGA-GGAG---CTGATTTT-AATCAGATTG
gi|26 : a----TGTAGCGACAGC--A---AAAA---TAGAAGCGG-ATCGA-GGAG---TTGATTTT-AATCAGACTGA
gi|27 : ------G----TGTAGCGACAGC--A---AAAA-TATAGGAGCGG-ATCGA--GAT---CTGATTTT-AATCCGA
gi|28 : -ACATTGTCTCACCGCTTGACATCTTCCTTTACCTCTAAT
gi|29 : TGATGGCTTAACAACGATTt
gi|3 : atttaataatatttaaagTGATGGCTTAACAACACCTATGATTGGACGAAAAATTC-TTAT--GATTTCCTAA-T--AAA-AAA-AAATTT
gi|3 : atttaataatctctaaacTTTTCT------TGTGTC---------------TT-------------------A-CG--CT--ATTTT------------TA-------AAATGGGGATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAGGCCTAGTTTGAATTGCTTTTT-ATTGC-TACT--AAAAAT-AA--ACA--AA-C-CGTGTC--TACGAAT-AAAACACAAAATA------TACTGTGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CGTCGAGATCCGACATAT----CCTAGACTAGAGCATCATGCAAT-CTG-AGGTA------G----TGTAGCAACAGC--A---AAAAACATAGGAGCGA-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTAT--------------GGAATGAAGCGTCCTGCAC--AGAAACAC-CAACTGCATGAGCACCGCACTGGCGAAAGTTGCCCGTCATTCCTCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACACGACATTGTCTCACCACTTGACATCTTTGTTTATCTCTAAtcttgtgtcttacgctatttttaaaatggggatttccacaaaatcaatgcaagcgatgtgtattaggcctagtttgaattgctttttattgctactaaaaataaacaaaccgtgtctacgaataaaacacaaaatatactgtgcactgtcttcggagcactgctattcaagctctgaacgatgagggcgtcgagatccgacatatcctagactagagcatcatgcaatctgaggtagtgtagcaacagcaaaaaacataggagcgaatcgaggatctgattttaatcagattgagtatcatgtatggaatgaagcgtcctgcacagaaacaccaactgcatgagcaccgcactggcgaaagttgcccgtcattcctcctctgctgtgtcaacgtttcagccgccttcgtccttgcaaacaccatgcaacacgacattgtctcaccacttgacatctttgtttatctctaa
gi|31 : atttaataatctctaaactgatggcttaacaacacctatgattggacgaaaaattcttatgatttcctaataaaaaaaaaAACGG-GTCGA-GGAT---CTGATTTT-AATCAGAT
gi|32 : AACGG-ATCGA-GGAT---CTGATTTT-AATCAGATc
gi|4 : TTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GATTTTTTAATA--AAA-AAA-AAATTTA-----GT------GC---TGGAGTTCACCTGCACT-AA--AC-----ACCG---GAACTACTTTTTTCGGGAAT------------------------------------------------------TT------------TA-------GAATGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAG------TTTGAAATGTTTTTT-ATTGC-TACT--GAAAAT-AA--ACA--AA-T-CGTGTACATACGAAT-AAAATACAAAATACTAGTATACTGCGCACTGTCTTCGGAGCATTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGAA------G----TGCAGCGATAGCA-A---AAAAATATAGGAGCGG-ATCGA-GGAT---CTGATTTT--ATCAGATTGAGTATCCTGTACATGAATGA-CCATATGAATGAAGCGTCCGACAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGTGAAAGTTGCCCGTCCTTCCTCCTCTGTTGTG------------TCAACGTTTCAGCCGCCTTCGTC
gi|5 : catttaataatctctaaaTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GTTTTCTTAAT-------------ATTTGTTTTAGT------GC---GGGAGTTCACATGCACTAAA-TACTCG-AACCG---GAACTACTTTTCTCAGGAATGTGTC---------------TT-------------------A-CG--CT--ATTTT------------TA-------AAATGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAG------ATTGAATTGTTTTTT-ATTGC-TACT--AAAAAT-AA--ACA----------------ACGAAT-AAGATACAAAATA------TACTGCGCACTGTCTTCACAACACTGATATTCAAGCTCTAAACGACG-AGGG-CTTCGAGATCCGACATAC----CCTAGA-----ATATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC------AAAAACACAGGAGCGG-ATCGA-GGAT---CTGATATC-AATCAGATTGAGTATCATGTGCATGAGTGG-CCATAGGAATGAAGCGTCCG
gi|6 : catttaataatctctaaac-TACT--AAAATA-AA--ACA--AAAC-TGTGTC--TACGAATTAAAATACAAAATA------TACTGCG-ACTGTCTTCCGA-CACTGCTATTCAAG-TCTGACCGATG-AGGG-CATCGAGATCCGAC-------------------GTATCATGCAAAACTGCAGGTA------GATGCTGTAGCGACAGC--A---AAAAA-ATAGGAGCGG-ATCGA-GGAT---CTGATTTTTAATCAGATTGAGTATCATGTATA------G---AT-GGAATG---TGTCCGGCGCCAAGAAACACACAACTGCATGAGCACCGCACTGGCGAAAGTT-CCCGTCATTCCTCCTCTGCTATG------------TCAACCTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACAGCTTGACATCTTCGTTTATTTCTAAT
gi|7 : aagcgatgtgtatTGATAGCATAACAACAATTTGGATCGGATTAAAATTTG-TT-T--GCTTTCTCGG-T--AAA-TGT-TATTTTG-----GT------CC---CAGAGCACATCTGCAAT-TA-GAGT-----TCG---AAATTAGTTTTCTCTGGACTACGTCTGTCACGTTTCAATGTT-------------------ACCG--CT--AATTT------------TA-------GGACAGG----------TAC--------CAATG--TA----AATAATG--TG--TTTG------TT--AAATGCTTTCC-AGTTCATA-TGAAAAAAT-AA--ACACGAA-CAAATATA--TAC--AT-ATAATGCAAt
gi|8 : aatgcatttatcaaaccaaaaagTGATGGCTTAACAACAATTCTGCTGGGATGAAAAATTC-GCTT--GATTTCTTAATTTAAAA-AAA-AAA----------------------------TCGTC----CT-GG-TGTTC--AGCCG---GGACTACTTTTCTCTGGAATTTGTC---------------TTGTTCCCTGTTCTGATTTAAG-CA--CA--AATTA------------TA-------GAACGGAAATTTC----TACTATAATTTCATTGTTCATCTGAACAA-A--TGTATTTG------TTTG-AT--TTTTTC-ACTGC-TAC---AAAAAT-AA--ACA--A
gi|9 : atcattcaaatctttaaagTGATGGCTTAACAGTGATTT-------------AATTT-GTTT--GATTTCTTAAT----AA-CAC-AATTTTG-----GT------GC---GGGAGTTCATCTGCGCT--A-TAAGC--ACTCG---GGACTGCTTTTATCTTAAA-ACGTC---------------TTCC-----------------C-CGTTCT--AATTTTAGGCCTAATTATA-------GAACCAGGATTTT----TAC-TTGA--TCGTTG--TA----AACAAAA--TGTAT---------TTTG----GTTTTTT-ATTCC-T-TT--GAAAAT-AAATACA--AA-A------A--CAGAAAT-AAAATACAAAATcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): ACAATACAACACTAATCTCCCTAAATGAAGC
Alignments
lowQualScore : 33333333333333333333333333333333333333 55555555555555 77777777777777777777777777777777777777 111111111111 1111111 111111 11111111111 111111 1111 11111 111111 11 1111 11 444444444444 1
lowQualScore : 1 7777 33 55555555555555555555555555555555555555 22222222222222 555 44 55 77777777777777777777777777777777777777 44 44 1 777777777777 0000000 7777 44 44 0 55 8888 5555 2 111111 5 1 4 4 66 4 66 66 77777777777 4 666666 5 5 2222 44444 5 5 111111 6666 00 444 9 4 4 444 2 9999 00 99 8 0 111111111111 0 2
lowQualScore : . .... .. ...................................... .............. ... .. .. ...................................... .. .. . ............ ....... .... .. .. . .. .... .... . ...... . . . . .. . .. .. ........... . ...... . . .... ..... . . ...... .... .. ... . . . ... . .... .. .. . . ............ . .
lowQualScore : 0 2222 77 33333333333333333333333333333333333333 88888888888888 888 33 22 77777777777777777777777777777777777777 66 66 7 111111111111 8888888 1111 77 66 5 55 5555 6666 4 555555 7 2 4 4 11 4 11 11 00000000000 4 444444 7 7 1111 33333 7 7 555555 1111 00 777 3 7 7 111 4 3333 88 22 0 8 000000000000 0 5
consensus : GTTGATGGCTTAACAACGATTNTGATTGGACGAAAAATTC-TTAT--GATTTCTTAATT--AAA-AAA-AAATTTG-----GT------GC---GGGAGTTCATCTGCACT-AA-TACTC--AGCCG---GAACTACTTTTCTCTGGAATGCGTC---------------TT-------------------A-CG--CT--AATTT------------TA-------GAACGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTNG------TTTGAATTGTTTTTT-ATTGC-TACT--AAAAAT-AA--ACA--AA-C-CGTGTA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGCGAAAGTTGCCCGTCCTTCCTCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCGTTTATCTCTAAT
Reference ( family-2584 ) : GTTGATGGCTTAACAACGATTNTGATTGGACGAAAAATTC-TTAT--GATTTCTTAATT--AAA-AAA-AAATTTG-----GT------GC---GGGAGTTCATCTGCACT-AA-TACTC--AGCCG---GAACTACTTTTCTCTGGAATGCGTC---------------TT-------------------A-CG--CT--AATTT------------TA-------GAACGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTNG------TTTGAATTGTTTTTT-ATTGC-TACT--AAAAAT-AA--ACA--AA-C-CGTGTA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGCGAAAGTTGCCCGTCCTTCCTCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCGTTTATCTCTAAT
gi|1 : GTTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GATTTCTGAATT--AAA-AAA-AAATTTA-----GT------GC---GGGAGTTCACTTGCACT-AAATACTCGAAACCGTGGGAACTACTTTTCTCATGAATGTGTC---------------TT-------------------A-CG--CT--ATTTT------------TA-------GAATGGTAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTGG------TTTGAATTGTTTTTT-ATTGC-TACT--AGAAATTAA--ACA--AA-C-CGTGTA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-GGGGGCTTCGAGATCCGACATAT----CCTACA-----GTATCATGCAAT-CTG-AGATA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCACATTGAGTATCATGTACATTAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGAACCGCGCTGGCGAAAGTTGCCCGTCCT---TCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTACAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCTTTTATCTCTAAT
gi|10 : T-AAAATACAAAATA------TACTGCGCACTGTCTTTGGGGCATTGCTATTCAAGCTCTGAACGATG-CGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGATAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATAAATGG-CCATAGGAATTAAGCGTCCGGCAC--AGAAACA
gi|11 : TGATAGCTTA-CAACGATTCTGATTAGATGGAAA-TTCGTTGTTTGATTTCTTAATT--TTG-AAG-A--TTTG-----GT------CC---GAGAGTTCATCAG---------------AG--------ACTACCTTTCTCTGGAATACATC---------------TTTCA----------------A-AG--CA--AATTA------------TA-------GAGCAGGAATTT-----CAT-AAAA--TCATTG--TC----ACCAAAA--TATATTCG------TTTGATTTCTTTTTTCATTG
gi|12 : catttaataattcttaaagATAGTTTAACAATGATTCTGATTGTATGAAAAATTC-GT-T--GAATTCTTAGTT---TA-AAA-ACTTTTC-----GT------AC---GGGAGTTCATCTGCACT------CT------------AA------TTCTCTAGAATGCATC---------------TTCCCCATTTCTAATTTTA--G-CG--CT--AATTA------------TA-------GATTGGGAATTTTTGTACAC-AAAA--T
gi|13 : ctttaaaagtcTGGTGGCTGAACAAGAATTATGATTGGATAAACAATTC-------GCTTTCTGTATC--AA---------TTT------------------------TTTATCTGCACT----TA-TC--AGTCG------CTACTTTTCTCCTAAATGCGTC---------------TTAGTTCC-------------A-CG--TTCGAATTT------------TATCTTAAGGAACGGGTATTTC----CAC----A--TCAATg
gi|14 : taataatatttaaagTAACAACGATTTTGATTTGATGAAAAAATC-GTTT--GATTTTCTAAAT--AAA-A-------------------------------AGTC--TTTTTACT-AA--GCT----GTCA---GAACTAATTTCCTGTGGAATTTGTC---------------TT-------------------tt
gi|15 : G--CA--AATTA------------TA-------GAGCGTGAATTTC----CAT-AAAA--TCATTG--TA----AACAAAA--TATACTCG------TTTG-ATTCTTTTcgttcccgttc
gi|16 : atttcttttttcattgcgtctttccgcgttctaaatttggaTGATGGCTTAAAAACAATTATGACTGGAC-AAAAATTT-TGAT--GATTTCTTCA-T--AAA-AAC-GAATTTA-----GT------TC---AGGAGTTCA
gi|17 : tcatttaataatatttaaacC--A---TAAAA---AGGAGCGG-AACGA-GGAT---CTGATTTT-AATCAGATTGa
gi|18 : ggactttgaggcctctccacttacagtctatactcatgcagtatgttacgtcgttaGTT-ATGACTTAACAACGATTCTGATCGGATAAAAAATTC-GTTT--TATTTCT
gi|19 : atttaatagtatttaaa----TGTAGCGAGAGCCAA---AAAAATATAGGAGCGGCACAGACGGAT---CTGA-TTT-AATCAGAT---GCCCTATCTAC-T--GTGGTTCATAGGAA-GAAacatcaattttttttttatctgcact
gi|2 : TGATGGCTTAACAACAATTATGATTGGACAAAAAATTC-TTAT--GATTTCTTGAT------------AATTTT-----TTTTTATAGC---GGGAGTTCACCTGCACT-AAATACTCG-AACCG---GAATTACT--------------GTC---------------TT-------------------A-CG--CT--ATTTT------------TA-------GAATGGTAATTTC----CAC-AAAA--TCAATG--CA----AGCGATGAATGTATTAG------TTTGAAATGTTTTTT-ATTGC-TACT--AAAAAT-TA--ACA--AA-C-CGTGTACATACGAAT-AAAATACAAAATA------TACTGCACACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATGGAGGG-CTTCGAGATCCGACATGTATACCCTAGA-----GTATCATGCAAT-CTG-AGGTACATGTAG----TGTAGCGACAGC--A---AAAACCATAGAAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGAAATGAATCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCACTGGCGAAAGTTGAC-GTCCTTCCTCATCTGTTGTGTCCCCGGTTGTGTCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCA
gi|20 : ttaaaataatctctaaac------G----TGTAGCGAGAGCCAA---AAAAATATAGGAGCGGCACAGACGGAT---CTGA-TTT-AATCAGAT---GCCCTATCTAC-T--GTGGTTCATAGGAA
gi|21 : TAACAACAATTACGATTGGACGAATAA-TC-TTAT--GATTga
gi|22 : cacttaataatctctaaactgaatgtc------G----TATAACGACAGT--A---AAAAAAAATGGAGCGG-ATCGA-GGATCTGCTGATTTT-AATCCGATTGAATcat
gi|23 : cT--AAATAAATAAATACA-----GT------GCTCCGGGACTTCATCTGCACT----T-CAC--AGCCG---GGACTACTTTTc
gi|24 : aa----TGTAGCGACAAC--ATTTAAAGA----GGAGGAA-ATCAG-GGAT---CTCATTTT-TATTAGATTGA
gi|25 : tgt----TGTAGCAACTGT--A---TGAAAAAAAGGAGGGG-ATCGA-GGAG---CTGATTTT-AATCAGATTG
gi|26 : a----TGTAGCGACAGC--A---AAAA---TAGAAGCGG-ATCGA-GGAG---TTGATTTT-AATCAGACTGA
gi|27 : ------G----TGTAGCGACAGC--A---AAAA-TATAGGAGCGG-ATCGA--GAT---CTGATTTT-AATCCGA
gi|28 : -ACATTGTCTCACCGCTTGACATCTTCCTTTACCTCTAAT
gi|29 : TGATGGCTTAACAACGATTt
gi|3 : atttaataatatttaaagTGATGGCTTAACAACACCTATGATTGGACGAAAAATTC-TTAT--GATTTCCTAA-T--AAA-AAA-AAATTT
gi|3 : atttaataatctctaaacTTTTCT------TGTGTC---------------TT-------------------A-CG--CT--ATTTT------------TA-------AAATGGGGATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAGGCCTAGTTTGAATTGCTTTTT-ATTGC-TACT--AAAAAT-AA--ACA--AA-C-CGTGTC--TACGAAT-AAAACACAAAATA------TACTGTGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CGTCGAGATCCGACATAT----CCTAGACTAGAGCATCATGCAAT-CTG-AGGTA------G----TGTAGCAACAGC--A---AAAAACATAGGAGCGA-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTAT--------------GGAATGAAGCGTCCTGCAC--AGAAACAC-CAACTGCATGAGCACCGCACTGGCGAAAGTTGCCCGTCATTCCTCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACACGACATTGTCTCACCACTTGACATCTTTGTTTATCTCTAAtcttgtgtcttacgctatttttaaaatggggatttccacaaaatcaatgcaagcgatgtgtattaggcctagtttgaattgctttttattgctactaaaaataaacaaaccgtgtctacgaataaaacacaaaatatactgtgcactgtcttcggagcactgctattcaagctctgaacgatgagggcgtcgagatccgacatatcctagactagagcatcatgcaatctgaggtagtgtagcaacagcaaaaaacataggagcgaatcgaggatctgattttaatcagattgagtatcatgtatggaatgaagcgtcctgcacagaaacaccaactgcatgagcaccgcactggcgaaagttgcccgtcattcctcctctgctgtgtcaacgtttcagccgccttcgtccttgcaaacaccatgcaacacgacattgtctcaccacttgacatctttgtttatctctaa
gi|31 : atttaataatctctaaactgatggcttaacaacacctatgattggacgaaaaattcttatgatttcctaataaaaaaaaaAACGG-GTCGA-GGAT---CTGATTTT-AATCAGAT
gi|32 : AACGG-ATCGA-GGAT---CTGATTTT-AATCAGATc
gi|4 : TTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GATTTTTTAATA--AAA-AAA-AAATTTA-----GT------GC---TGGAGTTCACCTGCACT-AA--AC-----ACCG---GAACTACTTTTTTCGGGAAT------------------------------------------------------TT------------TA-------GAATGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAG------TTTGAAATGTTTTTT-ATTGC-TACT--GAAAAT-AA--ACA--AA-T-CGTGTACATACGAAT-AAAATACAAAATACTAGTATACTGCGCACTGTCTTCGGAGCATTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGAA------G----TGCAGCGATAGCA-A---AAAAATATAGGAGCGG-ATCGA-GGAT---CTGATTTT--ATCAGATTGAGTATCCTGTACATGAATGA-CCATATGAATGAAGCGTCCGACAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGTGAAAGTTGCCCGTCCTTCCTCCTCTGTTGTG------------TCAACGTTTCAGCCGCCTTCGTC
gi|5 : catttaataatctctaaaTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GTTTTCTTAAT-------------ATTTGTTTTAGT------GC---GGGAGTTCACATGCACTAAA-TACTCG-AACCG---GAACTACTTTTCTCAGGAATGTGTC---------------TT-------------------A-CG--CT--ATTTT------------TA-------AAATGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAG------ATTGAATTGTTTTTT-ATTGC-TACT--AAAAAT-AA--ACA----------------ACGAAT-AAGATACAAAATA------TACTGCGCACTGTCTTCACAACACTGATATTCAAGCTCTAAACGACG-AGGG-CTTCGAGATCCGACATAC----CCTAGA-----ATATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC------AAAAACACAGGAGCGG-ATCGA-GGAT---CTGATATC-AATCAGATTGAGTATCATGTGCATGAGTGG-CCATAGGAATGAAGCGTCCG
gi|6 : catttaataatctctaaac-TACT--AAAATA-AA--ACA--AAAC-TGTGTC--TACGAATTAAAATACAAAATA------TACTGCG-ACTGTCTTCCGA-CACTGCTATTCAAG-TCTGACCGATG-AGGG-CATCGAGATCCGAC-------------------GTATCATGCAAAACTGCAGGTA------GATGCTGTAGCGACAGC--A---AAAAA-ATAGGAGCGG-ATCGA-GGAT---CTGATTTTTAATCAGATTGAGTATCATGTATA------G---AT-GGAATG---TGTCCGGCGCCAAGAAACACACAACTGCATGAGCACCGCACTGGCGAAAGTT-CCCGTCATTCCTCCTCTGCTATG------------TCAACCTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACAGCTTGACATCTTCGTTTATTTCTAAT
gi|7 : aagcgatgtgtatTGATAGCATAACAACAATTTGGATCGGATTAAAATTTG-TT-T--GCTTTCTCGGT---AAA-TGT-TATTTTG-----GT------CC---CAGAGCACATCTGCAAT-TA-GAGTT-----CG---AAATTAGTTTTCTCTGGACTACGTCTGTCACGTTTCAATGTT-------------------ACCG--CT--AATTT------------TA-------GGACAGG----------TAC--------CAATG--TA----AATAATG--TG--TTTG------TT--AAATGCTTTCC-AGTTCATA-TGAAAAAAT-AA--ACACGAA-CAAATATA--TAC--AT-ATAATGCAAt
gi|8 : aatgcatttatcaaaccaaaaagTGATGGCTTAACAACAATTCTGCTGGGATGAAAAATTC-GCTT--GATTTCTTAATTTAAAA-AAA-AAA----------------------------TCGTC----CT-GG-TGTTC--AGCCG---GGACTACTTTTCTCTGGAATTTGTC---------------TTGTTCCCTGTTCTGATTTAAG-CA--CA--AATTA------------TA-------GAACGGAAATTTC----TACTATAATTTCATTGTTCATCTGAACAA-A--TGTATTTG------TTTG-AT--TTTTTC-ACTGC-TAC---AAAAAT-AA--ACA--A
gi|9 : atcattcaaatctttaaagTGATGGCTTAACAGTGATTT-------------AATTT-GTTT--GATTTCTTAAT----AA-CAC-AATTTTG-----GT------GC---GGGAGTTCATCTGCGCT--A-TAAGC--ACTCG---GGACTGCTTTTATCTTAAA-ACGTC---------------TTCC-----------------C-CGTTCT--AATTTTAGGCCTAATTATA-------GAACCAGGATTTT----TAC-TTGA--TCGTTG--TA----AACAAAA--TGTAT---------TTTG----GTTTTTT-ATTCC-T-TT--GAAAAT-AAATACA--AA-A------A--CAGAAAT-AAAATACAAAATcc
blockSeqs : C GTTG TT TAAAAAAAAAATTTAGTGCT AAATACTCGAAC . TG AC TTGTTCCCTGTTCTGATTTAAG TT CG A TAGGCCTAATTA TCTTAAG TGTA TA TT TT TCTG TGAA C GCCTAG A T C A GA . AT CG CCGTGTACA T CTAGTA G . ATAC CTAGA A C CATGTA ATGC CA TTT C C C CTG T ATAA TT CA A TCCCCGGTTGTG G C
blockSeqs : C GTT . TTTAAAAACTTTTCGTACG AAATACTCGAAC . TA GC TTCCCCATTTCTAATTTTAG . . A . . . A . . . AA C . A T . . . . . . TCGTGTACA . . . . . . . . . . CA . T C C . . ATGA TT . . . . G
blockSeqs : A TGA . TAAAAACGAATTTAGTTCA GGTGTTCAGC . CT GC TGTCACGTTTCAATGTTAC . . A . . . A . . . AA A . A A . . . . . . ACTGTGTC . . . . . . . . . . A . C . . . . ATGA C . . . . G
blockSeqs : T GTT . TAAATGTTATTTTGGTCCC ATAAGCACT . TG TT TTAGTTCCA . . A . . . A . . . TG A . A T . . . . . . CAAATATA . . . . . . . . . . . . T . . . . ATGA C . . .
blockSeqs : A TTA . TTTTGAAGATTTGGTCCG TATCAGT . GG GT TTTCAA . . T . . . A . . . TG A . A A . . . . . . CCGTGTC . . . . . . . . . . . . A . . . . T C .
blockSeqs : C TTA . TAATTTTTTTTTATAGCG AAGCTGT . AG GT TTCCC . . T . . . A . . . TG A . A T . . . . . . AA . . . . . . . . . . . . A . . . . T C
blockSeqs : A TTA . TAACACAATTTTGGTGCG TCACAGC . TG AC TTA . . T . . . A . . . TG T . . A . . . . . . . . . . . . T . . . . A .
blockSeqs : A TTA . TATTTGTTTTAGTGCG TAGAGTT . TG TT TTA . . A . . . A . . . AA T . . T . . . . . . . . . . . C . . . . . .
blockSeqs : A TTA . TTTAAAAAAAAAA AAACAC . TT AC TTA . . A . . . T . . . A . . . . . . . . T . . . .
blockSeqs : A GCT . TCAATTT AG . . . . . . A . . . . . . . . C . . . .
blockSeqs : A GTT . ATAAAA CT . . . . . . . . . . . . . . . . . . .
blockSeqs : T GT . . . . . . . . .
blockSeqs : C TT . . . . . . . . .
blockSeqs : T . . . . . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons : TAAAACGATTTTAGTNCG******************** TATCAGC******* *** CCGTGTACA**
originalCons : GTTGATGGCTTAACAACGATTNTGATTGGACGAAAAATTC-TTAT--GATTTCTTAATT--AAA-AAA-AAATTTG-----GT------GC---GGGAGTTCATCTGCACT-AA-TACTC--AGCCG---GAACTACTTTTCTCTGGAATGCGTC---------------TT-------------------A-CG--CT--AATTT------------TA-------GAACGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTNG------TTTGAATTGTTTTTT-ATTGC-TACT--AAAAAT-AA--ACA--AA-C-CGTGTA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGCGAAAGTTGCCCGTCCTTCCTCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCGTTTATCTCTAAT
finalCons : GTTGATGGCTTAACAACGATTNTGATTGGACGAAAAATTC-TTAT--GATTTCTTAATAAAACGATTTTAGTNCG--------------------GGAGTTCATCTGCACTTATCAGC-------CG---GAACTACTTTTCTCTGGAATGCGTC---------------TT-------------------A-CG--CT--AATTT------------TA-------GAACGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTNG------TTTGAATTGTTTTTT-ATTGC-TACT--AAAAAT-AA--ACA--AACCGTGTACA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGCGAAAGTTGCCCGTCCTTCCTCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCGTTTATCTCTAAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): ACAATACAACACTAATCTCCCTAAATGAAGC
Alignments
lowQualScore : 44444444444444444 5555555555555555 888888888888888888888888888888888888888888888888888888 111111111111 1111111 111111 2222222222 111111 1111 11111 111111 11 1111 11 444444444444 1
lowQualScore : 1 7777 33 2 33333333333333333 5 2 3 4444444444444444 66666 44 55 000000000000000000000000000000000000000000000000000000 44 44 1 777777777777 0000000 7777 44 44 0 55 8888 5555 2 111111 5 1 4 4 66 4 66 66 1111111111 4 666666 5 5 2222 44444 5 5 111111 6666 00 444 9 4 4 444 2 9999 00 99 8 0 111111111111 0 2
lowQualScore : . .... .. . ................. . . . ................ ..... .. .. ...................................................... .. .. . ............ ....... .... .. .. . .. .... .... . ...... . . . . .. . .. .. .......... . ...... . . .... ..... . . ...... .... .. ... . . . ... . .... .. .. . . ............ . .
lowQualScore : 0 2222 77 7 22222222222222222 7 0 6 5555555555555555 22222 33 22 111111111111111111111111111111111111111111111111111111 66 66 7 111111111111 8888888 1111 77 66 5 55 5555 6666 4 555555 7 2 4 4 11 4 11 11 2222222222 4 444444 7 7 1111 33333 7 7 555555 1111 00 777 3 7 7 111 4 3333 88 22 0 8 000000000000 0 5
consensus : GTTGATGGCTTAACAACGATTNTGATTGGACGAAAAATTC-TTAT--GA-TTTCTTAAT-----AAAACG--AT--TTTAGTNCGGGAGTTCATCTGCACT---TA-NC--AGC---CG---GAACTACTTTTCTCTGGAATGCGTC---------------TT-----------------A-------------------CG--CT--AATTT------------TA-------GAACGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTNG------TTTGAATTGTTTTTT-ATTGC-TACT--AAAAAT-AA--ACA--AA-CCGTGTACATACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGCGAAAGTTGCCCGTCCTTCCTCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCGTTTATCTCTAAT
Reference ( family-2584 ) : GTTGATGGCTTAACAACGATTNTGATTGGACGAAAAATTC-TTAT--GA-TTTCTTAAT-----AAAACG--AT--TTTAGTNCGGGAGTTCATCTGCACT---TA-TC--AGC---CG---GAACTACTTTTCTCTGGAATGCGTC---------------TT-----------------A-------------------CG--CT--AATTT------------TA-------GAACGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTNG------TTTGAATTGTTTTTT-ATTGC-TACT--AAAAAT-AA--ACA--AA-CCGTGTACATACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGCGAAAGTTGCCCGTCCTTCCTCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCGTTTATCTCTAAT
gi|1 : GTTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GA-TTTCTGAATTA---AAAAAA--AA--TTTAGTGCGGGAGTTCACTTGCACTAAATACTCGAAAC---CGTGGGAACTACTTTTCTCATGAATGTGTC---------------TT-----------------A-------------------CG--CT--ATTTT------------TA-------GAATGGTAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTGG------TTTGAATTGTTTTTT-ATTGC-TACT--AGAAATTAA--ACA--AA-CCGTGTA--TACGAAT-AAAATACAAAATA------TACTGCGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-GGGGGCTTCGAGATCCGACATAT----CCTACA-----GTATCATGCAAT-CTG-AGATA------G----TGTAGCGACAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCACATTGAGTATCATGTACATTAGTGG-CCATAGGAATGAAGCGTCCGGCAC--AGAAACAC-CAACTGCATGAGAACCGCGCTGGCGAAAGTTGCCCGTCCT---TCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTACAAACACCATGCAACAC-ACATTGTCTCACCGCTTGACATCTTCTTTTATCTCTAAT
gi|10 : T-AAAATACAAAATA------TACTGCGCACTGTCTTTGGGGCATTGCTATTCAAGCTCTGAACGATG-CGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGTA------G----TGTAGCGATAGC--A---AAAAACATAGGAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATAAATGG-CCATAGGAATTAAGCGTCCGGCAC--AGAAACA
gi|11 : TGATAGCTTA-CAACGATTCTGATTAGATGGAAA-TTCGTTGTTTGA-TTTCTTAATTTTG-AAGA--------TTTGGTCCGAGAGTTCATCAG--------------AG-----------ACTACCTTTCTCTGGAATACATC---------------TTTCA--------------A-------------------AG--CA--AATTA------------TA-------GAGCAGGAATTT-----CAT-AAAA--TCATTG--TC----ACCAAAA--TATATTCG------TTTGATTTCTTTTTTCATTG
gi|12 : catttaataattcttaaagATAGTTTAACAATGATTCTGATTGTATGAAAAATTC-GT-T--GA-ATTCTTAGTTTA--AAAAC----T--TTTCGTACGGGAGTTCATCTGCACT------------------------CTAA--TTCTCTAGAATGCATC---------------TTCCCCATTTCTAATTTTAG-------------------CG--CT--AATTA------------TA-------GATTGGGAATTTTTGTACAC-AAAA--T
gi|13 : ctttaaaagtcTGGTGGCTGAACAAGAATTATGATTGGATAAACAATTC-------GC-TTTCTGTAT---------CA--AT--TTT-----------TTATCTGCACT---TA-TC--AGT---CG------CTACTTTTCTCCTAAATGCGTC---------------TTAGTTCC-----------A-------------------CG--TTCGAATTT------------TATCTTAAGGAACGGGTATTTC----CAC----A--TCAATg
gi|14 : taataatatttaaagTAACAACGATTTTGATTTGATGAAAAAATC-GTTT--GATTTTCTAAAT-----AAAA-----------AGTC----------TTTTTACT---AA-GC--TGT---CA---GAACTAATTTCCTGTGGAATTTGTC---------------TT-----------------tt
gi|15 : G--CA--AATTA------------TA-------GAGCGTGAATTTC----CAT-AAAA--TCATTG--TA----AACAAAA--TATACTCG------TTTG-ATTCTTTTcgttcccgttc
gi|16 : atttcttttttcattgcgtctttccgcgttctaaatttggaTGATGGCTTAAAAACAATTATGACTGGAC-AAAAATTT-TGAT--GA-TTTCTTCATA----AAAACG--AA--TTTAGTTCAGGAGTTCA
gi|17 : tcatttaataatatttaaacC--A---TAAAA---AGGAGCGG-AACGA-GGAT---CTGATTTT-AATCAGATTGa
gi|18 : ggactttgaggcctctccacttacagtctatactcatgcagtatgttacgtcgttaGTT-ATGACTTAACAACGATTCTGATCGGATAAAAAATTC-GTTT--TA-TTTC----T-----ACATCA--AT--TTT--TTT-----TTTATCTGCACT---
gi|19 : atttaatagtatttaaa----TGTAGCGAGAGCCAA---AAAAATATAGGAGCGGCACAGACGGAT---CTGA-TTT-AATCAGAT---GCCCTATCTAC-T--GTGGTTCATAGGAA-GAA
gi|2 : TGATGGCTTAACAACAATTATGATTGGACAAAAAATTC-TTAT--GA-TTTCTTGAT-----AATTTT--TT--TTTATAGCGGGAGTTCACCTGCACTAAATACTCG-AAC---CG---GAATTACT--------------GTC---------------TT-----------------A-------------------CG--CT--ATTTT------------TA-------GAATGGTAATTTC----CAC-AAAA--TCAATG--CA----AGCGATGAATGTATTAG------TTTGAAATGTTTTTT-ATTGC-TACT--AAAAAT-TA--ACA--AA-CCGTGTACATACGAAT-AAAATACAAAATA------TACTGCACACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATGGAGGG-CTTCGAGATCCGACATGTATACCCTAGA-----GTATCATGCAAT-CTG-AGGTACATGTAG----TGTAGCGACAGC--A---AAAACCATAGAAGCGG-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTACATGAGTGG-CCATAGAAATGAATCGTCCGGCAC--AGAAACAC-CAACTGCATGAGCACCGCACTGGCGAAAGTTGAC-GTCCTTCCTCATCTGTTGTGTCCCCGGTTGTGTCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCA
gi|20 : ttaaaataatctctaaac------G----TGTAGCGAGAGCCAA---AAAAATATAGGAGCGGCACAGACGGAT---CTGA-TTT-AATCAGAT---GCCCTATCTAC-T--GTGGTTCATAGGAA
gi|21 : TAACAACAATTACGATTGGACGAATAA-TC-TTAT--GA-TTga
gi|22 : cacttaataatctctaaactgaatgtc------G----TATAACGACAGT--A---AAAAAAAATGGAGCGG-ATCGA-GGATCTGCTGATTTT-AATCCGATTGAATcat
gi|23 : cTCCGGGACTTCATCTGCACT---TC-AC--AGC---CG---GGACTACTTTTc
gi|24 : aataaataaataaatacagtgc----TGTAGCGACAAC--ATTTAAAGA----GGAGGAA-ATCAG-GGAT---CTCATTTT-TATTAGATTGA
gi|25 : tgt----TGTAGCAACTGT--A---TGAAAAAAAGGAGGGG-ATCGA-GGAG---CTGATTTT-AATCAGATTG
gi|26 : a----TGTAGCGACAGC--A---AAAA---TAGAAGCGG-ATCGA-GGAG---TTGATTTT-AATCAGACTGA
gi|27 : ------G----TGTAGCGACAGC--A---AAAA-TATAGGAGCGG-ATCGA--GAT---CTGATTTT-AATCCGA
gi|28 : -ACATTGTCTCACCGCTTGACATCTTCCTTTACCTCTAAT
gi|29 : TGATGGCTTAACAACGATTt
gi|3 : atttaataatatttaaagTGATGGCTTAACAACACCTATGATTGGACGAAAAATTC-TTAT--GA-TTTCCTAAT-----AAAA
gi|3 : atttaataatctctaaacTTTTCT------TGTGTC---------------TT-----------------A-------------------CG--CT--ATTTT------------TA-------AAATGGGGATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAGGCCTAGTTTGAATTGCTTTTT-ATTGC-TACT--AAAAAT-AA--ACA--AA-CCGTGT-C-TACGAAT-AAAACACAAAATA------TACTGTGCACTGTCTTCGGAGCACTGCTATTCAAGCTCTGAACGATG-AGGG-CGTCGAGATCCGACATAT----CCTAGACTAGAGCATCATGCAAT-CTG-AGGTA------G----TGTAGCAACAGC--A---AAAAACATAGGAGCGA-ATCGA-GGAT---CTGATTTT-AATCAGATTGAGTATCATGTAT--------------GGAATGAAGCGTCCTGCAC--AGAAACAC-CAACTGCATGAGCACCGCACTGGCGAAAGTTGCCCGTCATTCCTCCTCTGCTGTG------------TCAACGTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACACGACATTGTCTCACCACTTGACATCTTTGTTTATCTCTAAaaaaattttcttgtgtcttacgctatttttaaaatggggatttccacaaaatcaatgcaagcgatgtgtattaggcctagtttgaattgctttttattgctactaaaaataaacaaaccgtgtctacgaataaaacacaaaatatactgtgcactgtcttcggagcactgctattcaagctctgaacgatgagggcgtcgagatccgacatatcctagactagagcatcatgcaatctgaggtagtgtagcaacagcaaaaaacataggagcgaatcgaggatctgattttaatcagattgagtatcatgtatggaatgaagcgtcctgcacagaaacaccaactgcatgagcaccgcactggcgaaagttgcccgtcattcctcctctgctgtgtcaacgtttcagccgccttcgtccttgcaaacaccatgcaacacgacattgtctcaccacttgacatctttgtttatctctaa
gi|31 : atttaataatctctaaactgatggcttaacaacacctatgattggacgaaaaattcttatgatttcctaataaaaaaaaaAACGG-GTCGA-GGAT---CTGATTTT-AATCAGAT
gi|32 : AACGG-ATCGA-GGAT---CTGATTTT-AATCAGATc
gi|4 : TTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GA-TTTTTTAAT-----AAAAAA--AAAATTTAGTGCTGGAGTTCACCTGCACT---AA-AC--A-C---CG---GAACTACTTTTTTCGGGAAT----------------------------------------------------------------------TT------------TA-------GAATGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAG------TTTGAAATGTTTTTT-ATTGC-TACT--GAAAAT-AA--ACA--AA-TCGTGTACATACGAAT-AAAATACAAAATACTAGTATACTGCGCACTGTCTTCGGAGCATTGCTATTCAAGCTCTGAACGATG-AGGG-CTTCGAGATCCGACATAT----CCTAGA-----GTATCATGCAAT-CTG-AGGAA------G----TGCAGCGATAGCA-A---AAAAATATAGGAGCGG-ATCGA-GGAT---CTGATTTT--ATCAGATTGAGTATCCTGTACATGAATGA-CCATATGAATGAAGCGTCCGACAC--AGAAACAC-CAACTGCATGAGCACCGCGCTGGTGAAAGTTGCCCGTCCTTCCTCCTCTGTTGTG------------TCAACGTTTCAGCCGCCTTCGTC
gi|5 : catttaataatctctaaaTGATGGCTTAACAACAATTATGATTGGACGAAAAATTC-TTAT--GT-TTTCTTAAT-----AT--TT--GT--TTTAGTGCGGGAGTTCACATGCACTAAATACTCG-AAC---CG---GAACTACTTTTCTCAGGAATGTGTC---------------TT-----------------A-------------------CG--CT--ATTTT------------TA-------AAATGGGAATTTC----CAC-AAAA--TCAATG--CA----AGCGATG--TGTATTAG------ATTGAATTGTTTTTT-ATTGC-TACT--AAAAAT-AA--ACA--A-------------CGAAT-AAGATACAAAATA------TACTGCGCACTGTCTTCACAACACTGATATTCAAGCTCTAAACGACG-AGGG-CTTCGAGATCCGACATAC----CCTAGA-----ATATCATGCAAT-CTG-AGGTA------G----TGTAGCGACAGC------AAAAACACAGGAGCGG-ATCGA-GGAT---CTGATATC-AATCAGATTGAGTATCATGTGCATGAGTGG-CCATAGGAATGAAGCGTCCG
gi|6 : catttaataatctctaaac-TACT--AAAATA-AA--ACA--AAACTGTGT-C-TACGAATTAAAATACAAAATA------TACTGCG-ACTGTCTTCCGA-CACTGCTATTCAAG-TCTGACCGATG-AGGG-CATCGAGATCCGAC-------------------GTATCATGCAAAACTGCAGGTA------GATGCTGTAGCGACAGC--A---AAAAA-ATAGGAGCGG-ATCGA-GGAT---CTGATTTTTAATCAGATTGAGTATCATGTATA------G---AT-GGAATG---TGTCCGGCGCCAAGAAACACACAACTGCATGAGCACCGCACTGGCGAAAGTT-CCCGTCATTCCTCCTCTGCTATG------------TCAACCTTTCAGCCGCCTTCGTCCTTGCAAACACCATGCAACAC-ACATTGTCTCACAGCTTGACATCTTCGTTTATTTCTAAT
gi|7 : aagcgatgtgtatTGATAGCATAACAACAATTTGGATCGGATTAAAATTTG-TT-T--GC-TTTCTCGGT-----AAA-TGTTAT--TTTGGTCCCAGAGCACATCTGCAAT---TA-G---AGTT--CG---AAATTAGTTTTCTCTGGACTACGTCTGTCACGTTTCAATGTT-----------------AC------------------CG--CT--AATTT------------TA-------GGACAGG----------TAC--------CAATG--TA----AATAATG--TG--TTTG------TT--AAATGCTTTCC-AGTTCATA-TGAAAAAAT-AA--ACACGAA-CAA-ATATATAC--AT-ATAATGCAAt
gi|8 : aatgcatttatcaaaccaaaaagTGATGGCTTAACAACAATTCTGCTGGGATGAAAAATTC-GCTT--GA-TTTCTTAATTTAAAAAAAAA--AT--C---GTCCTGGTGTTCA-------------------GC---CG---GGACTACTTTTCTCTGGAATTTGTC---------------TT-----------------GTTCCCTGTTCTGATTTAAGCA--CA--AATTA------------TA-------GAACGGAAATTTC----TACTATAATTTCATTGTTCATCTGAACAA-A--TGTATTTG------TTTG-AT--TTTTTC-ACTGC-TAC---AAAAAT-AA--ACA--A
gi|9 : atcattcaaatctttaaagTGATGGCTTAACAGTGATTT-------------AATTT-GTTT--GA-TTTCTTAAT-----AACACA--AT--TTTGGTGCGGGAGTTCATCTGCGC----TA-TA--AGCACTCG---GGACTGCTTTTATCTTAAA-ACGTC---------------TTCC---------------C-------------------CGTTCT--AATTTTAGGCCTAATTATA-------GAACCAGGATTTT----TAC-TTGA--TCGTTG--TA----AACAAAA--TGTAT---------TTTG----GTTTTTT-ATTCC-T-TT--GAAAAT-AAATACA--AA-A-----ACAGA--AAT-AAAATACAAAATcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): ACAATACAACACTAATCTCCCTAAATGAAGC