lowQualScore : 1111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111
lowQualScore : 2222 1 1 333333 11111111 1 111 7777777777777777777777 111 11 111 2 11 11111 33 222222222 11111 111111 2 2222 111 2222222 3 11 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 111 1 44444444 111111 1 444444444 11 11 2222 22 11 1 11 1 444444444444444 1 222222 11 1111111 22 333333333 111 11
lowQualScore : 0000 5 0 555555 99999999 2 444 11 0 2222222222222222222222 6 6 6 111 6 99 6 444 3 4 11 22222 2 44 5 7 222222222 66666 6 333333 3 4 0000 111 7777 8 6666666 3 2 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 000 8 0 3 66666666 333333 8 0 777777777 0 7 11 11 5555 8 77 33 4 0 11 8 3 0 222222222222222 3 222222 88 5555555 55 8 666666666 8 2 777 3 33
lowQualScore : .... . . ...... ........ . ... .. . ...................... . . . ... . .. . ... . . .. ..... . .. . . ......... ..... . ...... . . .... ... .... . ....... . . .. .................................................................................................................................................................................................... . ... . . . ........ ...... . . ......... . . .. .. .... . .. .. . . .. . . . ............... . ...... .. ....... .. . ......... . . ... . ..
lowQualScore : 8888 0 0 222222 55555555 8 000 88 6 0000000000000000000000 7 7 7 777 7 88 7 000 8 0 00 66666 5 22 7 5 333333333 77777 7 555555 3 8 2222 777 8888 0 0000000 2 0 00 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 222 0 0 2 55555555 444444 0 0 000000000 8 8 00 00 2222 8 55 88 0 0 00 0 6 8 666666666666666 3 000000 33 3333333 77 8 000000000 8 5 555 2 88
consensus : AACAAA---TAGATGACTATTATTTAT-TTT--C--TTAGA--A-T-NCTTNATT---TCTAATTTC-ATAAAANAA-----------TGCCAG-C-ATTTGG-ACTC---TT-ACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCTCCTGTTTGTAG---TTTTTTT-----TC-TGA-TT---TTAGTGAAACCTT--ACAGTATT---GAAC-AT-TTCCTG-TTAT-------TAGCCTGAC--CCTT--------------CA------------T-----T--TT-NTG-AC------TT--GTATC------TGGAAA-CTATATAAT-T-A-AC-GCTAC-AAATC-TGCTTAATAA--ATGG--ATAC-T-C-CATTGTTT---TACATCCATGCNTTCATCA-------CANAANC--TTTTGC----A----TGTG-CAGGGGTTTGGAGAA-TAAAACT-GGA-ATGAAAAAAA----CGGTATTT--TCTTCTTTGT-CAGCAAAAA-TCAAT-TTATAT--ACGG--TGATTTTTTGTTTT-CGA--TTTCCTCTNCAT-TTGAAATT--G-GGAAAAAATA--TGTA-T-TA---TGA-TTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------ATCGGTGGT---ATTTTGA--CCCCCAAAAA
Reference ( gi|2 ) : AACAAA---TAGATGCCTATTATTTAT-TT---C--TTAGA--A-T-ACTTCATT---TCTAATTTC-ATAAAAAAAAAAAAAAAAAATGCCAG-C-ATTTGG-ACTC---TT-ACTTAAAG-TTGT---GAATT-CCTA--ATA-TT-ATCAGGTTTACAGAACGATCTCTCTTGTTAGTAG---CTTTTTT-----TC-TGA-TT---TTAGTGACACCCT--ACAGTATT---GAAC-AT-TTCCTG-TTAT-------TAGCCT-AC--CCTT--------------CA------------T-----T--TT-GTG-AC------TT--G-AT-------TGGAAA-CTTTATAATGT-ACAT-GCTAC-AAATC-GGCTTAATAA--ATGGA-ATAC-T-C-TATTGTTT---TAC--C-A---GTTCATCA-------CATA-----TTTTG-----A----TGTGGCAGGGGTATGGAGAA-TAAAACT-GGA-ATGAAAAAA-----CAATATTT--TCTTCTTTGT-CAGCAAAAATTTAATGTTACAT--ACGG--TGATTCCTTGGTTT--GA--TTTCCTCTACAT-TTGAAATT--G-GGAAAAAATA---GTA-TCTA---TGA-TTG--GG--AAAAATA--CCCAA-TTTTTGGGAGGG-AGAAACCAGCCGAATAAAAAAAAATCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|1 : AACAAAAATTAGATGACTATTATTTAT-TT---TCTTTAGA--A-T-TATTCATT---TCTAATTTTGATAAAACTC-----------TGCCAGGCGATTTGGTACCTGCTTT-ACCTAAAG-TCGTAACGAGTTGCCTATCATT-TT-AT-AGGTTTACAGAAC-ATCCTCCCTGTTTGTAG---TTTTTTTGTGTGTG-TGAGTTATATTAGTGA-ACCATGTACAGTATTTGGAAACTATATTCGTGCTTATATTACCATAGACC-ACTTCCTTTGTCGGGAAACAAACA------------TAAGTGT--TT-TTG-G-------TT--C-ATC------TGGAAAACTATATAAT-----AT-GCTACGAAATCTAGCTTAATTA---TGGACATTC-T-TGTGTTGTTTCTTTACATC-A---TTCCATCAAAATCCGCACAAATCTTTTTG-----AACCTTGTG-CAGTGGTATGGTGAAATCCAACTTGGA-ATGAAAAAAAT---CGATACTTATTCTT-TTTGTTCAGCAAAAAAT-AATGT---ATTAACGGAGTGTTTTTCTGCTTTTTGAATTTTTCTCTTAATGTTAAAATTTTG-GAGAATAATAAATGTAATCTAAAATGAATTGCCGG--AAAAATAGCCTCAA-GTTTTTGGAGGGCACAAACGAGCCGAAT-------ACTCGGTGGTTGCATATTGATCCTCCCAGAAA
gi|3 : gattttatcgggtgatttttaactaaccaccttacacctctatctcctattgaattgggtgaaaacattagcgaggacatttttctcaaattgggaaaaatcattttagtaaattaagttgataaataaatgcataaaataatgagaattatataggaacaacaaatgttttgtttgagatccattttatatctgattagaatcatgaaataaatcttttttctAACAAA----GGATGACTATTATTTAT-TTTTTC--TTGAATTA-T-CTTTTATTCTATTTATTTTT-TTAAAAT-------------TGCCAG-C-ATTTGG-ACTC---TTAAC--AAAGTTTGT---GAATT-GCTA--ATATTT-ATCAGGTCTACAGAAATGTTTC-CCTGTTTTGAG---TTTTTTT-----TCTTGA--C---TTAGTGA-AACTT--A-AGTA-T---GAAC-AT-TTCCTG-TTAT-------TA-CCTAAC--CTTT--------------CAATGTCAACAAGGT-----T--TT-GT--AT------CT--G-----------GGAA---TATACAAT------C-GCTAC---ATC-TGCTTA--AA--GTGG--ATAC-TCC-TATTGTTT---Tatatgcaactgattgtgtcacagcagttttaccatctaaattatatt
gi|10 : taaatgcataataataaatataaggaacaatgttttgggtttcattttatattgatttgaaatataattttttttttttttttAACAAA---TAGATAACTATTATTTATGTT---C--ATAGA--ATT-ACTTATTT---TCTAATGTC-ATTTACAAA------------GCCAG-C-ATTTGG-ACTC---TT-ACCCAAAG-TTGtc
gi|9 : ttttaAACAAA---TAAGAGACTATTATTTAT-TTT--C--TTAGA--A-TTACTT-ATC---TTT--TTT-----------------AAAAATGCCAG-C-ACTTAG-ACTC---TT-ACCCAAAG-TTGT---GAATTGCCTca
gi|15 : ttgaaatcatgaaataattttttttttttttTT---TCTAATGTC-ATAAAAAAAT----------TGCCAG-T-ATTTGG-ACTC---TT-AACTAAAG-TTGT---AAATTGCCTA--ATA-T
gi|5 : tAAAAATACCAG-C-ATTTGG-ACTC---TT-ACC-------------GG----CCTA--ATT-TTTATCAGGTTTACAGAAC-ATCTCTCCTGTT-GTAGGGGCTTTTT-------C-TGA-TT---TTAGTGAAACCTT--ACAGTATT---GAAC-AT-TTCCTG-TTAT-------TAGCCTGAC--CCTT--------------CA------------T-----TGGTT-TTGAAC------TTTAA-ATTTGTATCTGGAAA-CTATATAAT-----AT-GCTTC-A
gi|14 : TA--ATA-AG-GTCAAATTCACAGAAC-ATCTCTCCTGTTTGTG------TTTTT-----TC-TGA-TT---TTAAGGAAACCCT----GGTTTT---G-AC-AT-cactgccaccgcatggtgctccattctcaactttttcactt
gi|6 : tTTTACAGAA----------TGTTGGTTC---TCCCTTT-----TT-TGA-TT-----AGTGAAACCTT--GTAATGTT---GAAC-TT-TTTCTG-TTAT-------TAACCTGAC--CCTT--------------TA------------
gi|8 : ACAGAAC-ATCTTTCCTGTTTGTAG---CTTTTTT-----TC-TGA-CT---TTAGTGAAACCTT--AAAGTATT---GAAC-A--TTCCTG-TTAT-------TAGCCTAAC--CCTT--------------CA------------T-----G--TCAACA-ACAAGGTTTT--GTATC------TGGGAA-CT-----ATGTGATAC-GCTAC-AAATC-ataatggcggtcaaactaaaaatgtcagcaaggctggcttgtatctgggaactatataatatactttgttatatatctacttaaatggatacttccattgtttt
gi|6 : TG-GC------TT--GTATC------TGGGAA-CTATATAATAT-ACTTTGTTAT-ATATC-TACTTAA-----ATGG--ATACTT-C-CATTGTTT---Tta
gi|4 : tttacagaatgttggttctcccttttttgattagtgaaaccttgtaatgttgaactttttctgttattaacctgaccctttaataatggcggtcaaactaaaaatgtcagcaaggc-AAAT---GCATAATAATCAT----AT-C-T-C-CATTGTAT---TAC--CCATGCATTCATCA-------CAAAACC--TTTTGC----A----TGTG-CAGGGGTTTGGAGAA-TAAAACT-GGAGATGAAAAAAAACCCCAGTATTT--TC-TCTTTGT-CAG-AAAA--TTAAT-TTATAT--ATGG--TGA--CTTTTGTTTACAA--TTTTCTCTACAT-TTGAAATT--GCGGAAAAAATAGGTGTA-T------TGA-TTG--GGAAAAAAATA--CCTAATTTTTTGGGAGGG--GAAACCACCCAATT--------ATCTGT-GC---ATTTTGG--CC
gi|7 : agtgcactagaatgataaaTTCATCA-------CATAATC--TTTTGC----A----CGTG-CAGGGATTTGGAAAA-TAAAACT-GGA-ATGAAAAAA-----CG-TATTT--TCT-CTTTGT-CAGCAAAA--TCAAT-TTATAT--ACGA--TGATTT-TTGTTTT--GA--TTTCCTCTACAT-TTGAAATT--G-GG-AAAAATA---GTA-Tggaaaaaaaat
gi|17 : acaca-----TTTTGCTTACA----TGTG-CAGGGGTTTGGAGAA-T-AAACT-Gat
gi|11 : atcagaaaacc-GGA-A-GAAAAAA-----CA-TATTT--TCT-CTTTGT-CAGCAAA---TCAAT-TTATAT--ATGG--TGATTT-TTGTTTT--GA--TTTCCTCTTCAT-TTGAAATT--G-GG-AAAAATA---GTA-
gi|19 : TATTT--T-TTCTTTGT-CAG-AAAAAT---AT-TTATAT--ATGG--TGa
gi|12 : acccgTGAAATT--G-GGAAGAA-T----GTA-AATA---TGA-TGG--GA--AAAAATA--GCCAG-TT----GGAAAG-GGAATACAGCCGAAT--------ATC-GCGGT---A-TTTGA--CCCCCAAAAA
gi|18 : GAAAC-AGCCGAATA--------TCGGTGGT---ATTTTGA--CTCCAAAAAAaatcac
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AAAAATATAAGGAACAACAAAATTTAATGTTTTGTTGAGTTCATTTTCATATCTGATTAGAAATCATGAAATAGTTTATAAACTCTTTT
Unaligned ( gi|16 ): GCTTGGATTTAGTCCACACAGTGGTTAAACATTCTAACATCCCAACTATACT
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 1111 111 11 111 11 3333333333333333 111 111 11 11111 111 111 111 11 1111111111111111111111111111 1111 555555555 111 111 111 33333333 111 111 222222222 1 2222222 1 2 11 44444444444444444 1 11 11 11 2 1 1 22222222 111 11
lowQualScore : 4444 111 8 11 8 44 1 111 00 1111111111111111 5 5 5 000 0 4 5 111 99 6 8 00 0 5 888 44444 5 55 000 5 66 000 5 5 111 5 00 6 6666666666666666666666666666 3333 6 777777777 999 5 7777 000 6 1 6 888 444 00000000 1 444 444 1 99 777777777 8 1 8 5 6 8 0 3 8888888 99 7 6 99 888 6 99 0 0 8 3 11 1 8 99 6 1 0 66666666666666666 0 33 33 33 0 3 0 0 5 99999999 8 5 444 0 11
lowQualScore : .... ... . .. . .. . ... .. ................ . . . ... . . . ... .. . . .. . . ... ..... . .. ... . .. ... . . ... . .. . ............................ .... . ......... ... . .... ... . . . ... ... ........ . ... ... . .. ......... . . . . . . . . ....... .. . . .. ... . .. . . . . .. . . .. . . . ................. . .. .. .. . . . . . ........ . . ... . ..
lowQualScore : 8888 888 0 00 0 22 0 777 33 4444444444444444 7 7 7 000 7 0 7 777 22 7 0 00 4 7 666 33333 7 99 000 7 77 000 7 7 777 2 33 7 1111111111111111111111111111 3333 7 333333333 222 7 3333 888 7 7 7 333 000 77777777 0 000 000 0 88 000000000 0 4 0 6 7 0 8 6 3333333 22 3 7 88 333 7 22 6 8 0 2 00 0 0 22 7 7 8 00000000000000000 0 88 88 88 0 2 0 0 0 00000000 0 0 000 8 00
consensus : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGA--A-TNNTTCATT---TCTAATTTC-ATAAAAAAA-----------T-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT---GAAC-AT-TTCCTGTT---ATTAGCCT-GACC-CTTCATT--TT-NCG--------ACA-GG-T----TTG---TATCTGGGAA-CTATATAAT----AC---GCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TCC---ATTGTTT---TAC--CCAT-CGTTCA---TC---ACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAGAA-TAAAACT-GGA-ATGAAAAAAA----CAGTATTT--TCTTCTTTGT-CAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG-TTTT-GA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
Reference ( family-2576 ) : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGA--A-TNCTTNATT---TCTAATTTC-ATAAAANAA-----------T-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT---GAAC-AT-TTCCTGTT---ATTAGCCT-GACC-CTTCATT--TT-NTG--------AC----------TTG---TATCTGGAAA-CTATATAAT-TA-AC---GCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TCC---ATTGTTT---TACATCCATGCNTTCA---TC---ACANAANCTTTTGC----A---TGT-GCAGGGGTTTGGAGAA-TAAAACT-GGA-ATGAAAAAAA----CGGTATTT--TCTTCTTTGT-CAGCAAAAA-TCAAT-TTATATACG--GTGATTTTTTG-TTTTCGA--TTTCCTCTNCAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|1 : AACAAAAATTAGATGACTATTATTTATTTT--CTTTAGA--A-TTATTCATT---TCTAATTTTGATAAAACTC-----------T-GCCAGGCGATTTGGTACCTGCTTTACCTAAAG-TCGTAACGAGTTGCCTATCATT-TT-AT-AGGTTTACAGAAC-ATCCTC-CCTGTTTGTA-GTTTTTTTGTGTGTG-TGAGTTATATTAGTGAACCATGTACAGTATTTGGAAACTATATTCGTGCTTATATTACCATAGACCACTTCCTT--TG-TCGGGAAACAAACATAAGTGTTTTTGGTTCATCTGGAAAACTATATAAT----AT---GCTACGAAATCTAGCTTAATTA---TGG-ACAT-TCTTGTGTTGTTTCTTTACATC-ATTCCATCAAAATCCGCACAAATCTTTTTGA----ACCTTGT-GCAGTGGTATGGTGAAATCCAACTTGGA-ATGAAAAAAAT---CGATACTTATTCTT-TTTGTTCAGCAAAAA-ATAAT-GTATTAACGGAGTGTTTTTCTGCTTTTTGAATTTTTCTCTTAATGTTAAAATTTTG-GAGAATAATAAA--TGTAA-TCTAAAATGAATTGCCGG--AAAAATAGCCTCAAGTTTTT-GGAGGGCACAAACGAGCCGAAT--------ACTCGGTGGTTGCATATTGATCCTCCCAGAAA
gi|10 : gattttatcgggtgatttttaactaaccaccttacacctctatctcctattgaattgggtgaaaacattagcgaggacatttttctcaaattgggaaaaatcattttagtaaattaagttgataaataaatgcataaaataatgagaattatataggaacaacaaatgttttgtttgagatccattttatatctgattagaatcatgaaataaatcttttttctAACAAA---TAGATAACTATTATTTATGTT--CAT-AGA--ATTACTTATTT---TCTAATGTC-ATTTACAAA-------------GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGatatgcaactgattgtgtcacagcagttttaccatctaaattatatt
gi|11 : tttta-GGA-A--GAAAAAA----CA-TATTT--TCT-CTTTGT-CAGCAAA---TCAAT-TTATATATG--GTGATTTTT-G-TTTT-GA--TTTCCTCTTCAT-TTGAAA--TTG-GGAAAAAca
gi|12 : TGAAA--TTG-GGAAGAA-------TGTAAAT-----ATG-ATGG--GA--AAAAATA--GCCAG-TT----GGAAAG-GGAATACAGCCGAAT--------A-TC-GCGGT---A-TTTGA--CCCCCAAAAAtagtaa
gi|14 : TA--ATA-AG-GTCAAATTCACAGAAC-ATCTCT-CCTGTTTGTG----TTTTT-----TC-TGA-TT---TTAAGGAAACCC-T--GGTTTT---G-AC-AT-aatcac
gi|15 : tTT---TCTAATGTC-ATAAAAAAA-----------TTGCCAG-T-ATTTGG-ACTC---TTAACTAAAG-TTGT---AAATTGCCTA--ATA-T
gi|17 : tA---TC---AGAAAACCTTTTGCTTACA---TGT-GCAGGGGTTTGGAGAA-T-AAACT-G
gi|18 : GAAAC-AGCCGAAT--------A-TCGGTGGT---ATTTTGA--CTCCAAAAAA
gi|19 : GTATTT--T-TTCTTTGT-CAG-AAAAA-T--AT-TTATATATG--GTGatcact
gi|2 : acccAACAAA---TAGATGCCTATTATTTATTT---CTT-AGA--A-TACTTCATT---TCTAATTTC-ATAAAAAAAAAAAAAAAAAAT-GCCAG-C-ATTTGG-ACTC---TTACTTAAAG-TTGT---GAATT-CCTA--ATA-TT-ATCAGGTTTACAGAACGATCTCT-CTTGTTAGTA-GCTTTTTT-----TC-TGA-TT---TTAGTGACACCC-TACAGTATT---GAAC-AT-TTCCTGTT---ATTAGCCT--ACC-CTTCATT--TT-GTG--------AC----------TTG----AT-TGGAAA-CTTTATAATGTACAT---GCTAC-AAATCG-GCTTAATAA--ATGGAATAC-TCT---ATTGTTT---TA---CCA---GTTCA---TC---ACATA---TTTTG-----A---TGTGGCAGGGGTATGGAGAA-TAAAACT-GGA-ATG-AAAAAA----CAATATTT--TCTTCTTTGT-CAGCAAAAATTTAATGTTACATACG--GTGATTCCTTG-GTTT-GA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A---GTATCT-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTTGGGAGGG-AGAAACCAGCCGAATAAAAAAAAA-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|3 : AACAAA----GGATGACTATTATTTATTTTTTCTT-GAATTA-TCTTTTATTCTATTTATTTTT-TTAAAAT-------------T-GCCAG-C-ATTTGG-ACTC---TTA-ACAAAGTTTGT---GAATTG-CTA--ATATTT-ATCAGGTCTACAGAA--ATGTTTCCCTGTTTTGA-GTTTTTTT-----TCTTGA--C---TTAGTGAAA-CT-TA-AGTA-T---GAAC-AT-TTCCTGTT---ATTA-CCT-AACC-TTTCAAT--GT-C-A--------ACAAGGTT----TTG---TATCTGGGAA--TATACAAT-----C---GCTAC---ATCT-GCTTA--AA--GTGG-ATAC-TCCT--ATTGTTT---T
gi|4 : taaatgcataataataaatataaggaacaatgttttgggtttcattttatattgatttgaaatataattttttttttttttttT-GCATAATAATCAT---AT-C-TCC---ATTGTAT---TAC--CCATGCATTCA---TC---ACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAGAA-TAAAACT-GGAGATGAAAAAAAACCCCAGTATTT--TC-TCTTTGT-CAG--AAAA-TTAAT-TTATATATG--GTGA-CTTTTG-TTTACAA--TTTTCTCTACAT-TTGAAA--TTGCGGAAAAAAT--AGGTGTAT--------TG-ATTG--GGAAAAAAATA--CCTAATTTTTT-GGGAGG-GGAAACCACCCAATT--------A-TCTGT-GC---ATTTTGG--CCtc
gi|5 : agtgcactagaatgataaaaaaAAAAA-----------T-ACCAG-C-ATTTGG-ACTC---TTACC-------------G----GCCTA--ATT-TTTATCAGGTTTACAGAAC-ATCTCT-CCTG-TTGTAGGGGCTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT---GAAC-AT-TTCCTGTT---ATTAGCCT-GACC-CTTCATTGGTT-TTGAACTTTAAAT----------TTG---TATCTGGAAA-CTATATAAT----AT---GCTTC-ACA-CT-GC-CACCGC--ATGG--TGC-TCC---ATTggaaaaaaaat
gi|6 : TTTACAGAA-----------TGTTGGTT-CTCCCTTT-----TT-TGA-TT-----AGTGAAACCT-TGTAATGTT---GAAC-TT-TTTCTGTT---ATTAACCT-GACC-CTTTActcaactttttcactt
gi|6 : TG--------GC----------TTG---TATCTGGGAA-CTATATAAT-AT-ACTTTGTTAT-ATATCT-ACT---TAA--ATGG-ATACTTCC---ATTGTTT---Tataatggcggtcaaactaaaaatgtcagcaaggctggcttgtatctgggaactatataatatactttgttatatatctacttaaatggatacttccattgtttt
gi|7 : tttacagaatgttggttctcccttttttgattagtgaaaccttgtaatgttgaactttttctgttattaacctgaccctttaataatggcggtcaaactaaaaatgtcagcaaggcCATTCA---TC---ACATAATCTTTTGC----A---CGT-GCAGGGATTTGGAAAA-TAAAACT-GGA-ATG-AAAAAA----C-GTATTT--TC-TCTTTGT-CAGC-AAAA-TCAAT-TTATATACG--ATGA-TTTTTG-TTTT-GA--TTTCCTCTACAT-TTGAAA--TTG-GG-AAAAAT--A---GTAT-
gi|8 : acaACAGAAC-ATCTTT-CCTGTTTGTA-GCTTTTTT-----TC-TGA-CT---TTAGTGAAACCT-TAAAGTATT---GAAC-A--TTCCTGTT---ATTAGCCT-AACC-CTTCATG--TCAACA--------ACAAGGTT----TTG---TATCTGGGAA-CTATGTGAT----AC---GCTAC-AAATCT-at
gi|9 : AACAAA---TAAGAGACTATTATTTATTTT--CTT-AGA--A-TTACTTATC---TTT--TTT------AAAAA-----------T-GCCAG-C-ACTTAG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAAATATAAGGAACAACAAAATTTAATGTTTTGTTGAGTTCATTTTCATATCTGATTAGAAATCATGAAATAGTTTATAAACTCTTTT
Unaligned ( gi|16 ): GCTTGGATTTAGTCCACACAGTGGTTAAACATTCTAACATCCCAACTATACT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 111 11 111 11 2222222222222222 111 111 11 11111 111 111 111 11 33333333333333333333333333333333333333333333333333333333 33333333333 111111111 11111 111 2 11 1 333333333 222222222 1 2222 1 11 11 44444444444444444 1 11 11 11 2 1 1 22222222 111 11
lowQualScore : 4444 111 8 11 22 6 111 00 8888888888888888 5 5 5 000 0 4 5 111 99 6 8 00 0 5 888 44444 5 55 000 5 66 000 5 5 111 5 00 6 66666666666666666666666666666666666666666666666666666666 99 6 00000000000 999 5 555555555 6 1 6 33333 444 3 77 2 0 222222222 1 6 777777777 8 1 8 5 8 8 0 3 5555 77 99 7 6 99 6 4 6 99 0 3 11 8 11 1 8 99 6 1 0 66666666666666666 0 33 33 33 0 3 0 0 5 99999999 8 5 444 0 11
lowQualScore : .... ... . .. .. . ... .. ................ . . . ... . . . ... .. . . .. . . ... ..... . .. ... . .. ... . . ... . .. . ........................................................ .. . ........... ... . ......... . . . ..... ... . .. . . ......... . . ......... . . . . . . . . .... .. .. . . .. . . . .. . . .. . .. . . .. . . . ................. . .. .. .. . . . . . ........ . . ... . ..
lowQualScore : 8888 888 0 00 00 7 777 33 6666666666666666 7 7 7 000 7 0 7 777 22 7 0 00 4 7 666 33333 7 99 000 7 77 000 7 7 777 2 33 7 22222222222222222222222222222222222222222222222222222222 22 7 77777777777 222 7 000000000 7 7 7 77777 000 3 33 0 0 000000000 4 0 000000000 0 4 0 6 0 0 8 6 0000 55 22 3 7 88 7 2 7 22 6 8 00 0 00 4 0 22 7 7 8 00000000000000000 0 88 88 88 0 2 0 0 0 00000000 0 0 000 8 00
consensus : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGA--ATTATTTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT---GAAC-AT-TTCCTGTT---ATTAGCCT-GACC-CTTCATT--TT-NCG-----A----C--------------AA--------G--TT----T---GT--ATCTGGGAA-CTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTA-CCAT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
Reference ( family-2576 ) : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGA--ATNNTTCA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT---GAAC-AT-TTCCTGTT---ATTAGCCT-GACC-CTTCATT--TT-NCG-----A----C--------------AG--------G--TT----T---GT--ATCTGGGAA-CTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACCCAT-CGTT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|1 : AACAAAAATTAGATGACTATTATTTATTTT--CTTTAGA--ATTATTCA-TT---TCTAATTTTGATAAAA-----------CTCT-GCCAGGCGATTTGGTACCTGCTTTACCTAAAG-TCGTAACGAGTTGCCTATCATT-TT-AT-AGGTTTACAGAAC-ATCCTC-CCTGTTTGTA-GTTTTTTTGTGTGTG-TGAGTTATATTAGTGAACCATGTACAGTATTTGGAAACTATATTCGTGCTTATATTACCATAGACCACTTCCTT--TG-TCGGGAA-A----C--------------AAACATAAGTG--TT----TTTGGTTCATCTGGAAAACTATATAAT----A-----TGCTACGAAATCTAGCTTAAT-T--ATGG-ACAT-TCTTGT-GTTGTTTCTTTA--CAT-CATTCCATCAAAATCCGCACAAATCTTTTTGA----ACCTTGT-GCAGTGGTATGGTGAAATCCAACTTGGA-ATGAAAAAAAT---CGATACTTATTCTT-TTTGTTCAGCAAAAA-ATAAT-GTATTAACGGAGTGTTTTTCTGCTTTT-TGAATTTTTCTCTTAATGTTAAAATTTTG-GAGAATAATAAA--TGTAA-TCTAAAATGAATTGCCGG--AAAAATAGCCTCAAGTTTTT-GGAGGGCACAAACGAGCCGAAT--------ACTCGGTGGTTGCATATTGATCCTCCCAGAAA
gi|10 : gattttatcgggtgatttttaactaaccaccttacacctctatctcctattgaattgggtgaaaacattagcgaggacatttttctcaaattgggaaaaatcattttagtaaattaagttgataaataaatgcataaaataatgagaattatataggaacaacaaatgttttgtttgagatccattttatatctgattagaatcatgaaataaatcttttttctAACAAA---TAGATAACTATTATTTATGTT--CAT-AGA--ATTACTTATTT---TCTAATGTC-ATTTAC-----------AAA--GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGatatgcaactgattgtgtcacagcagttttaccatctaaattatatt
gi|11 : ttttaGGA-A--GAAAAAA----CA-TATT--TTCT-CTTTG-TCAGCAAA---TCAAT-TTATATATG--GTGATTTT-TG--TTT-TGA--TTTCCTCTTCAT-TTGAAA--TTG-GGAAAAAca
gi|12 : TGAAA--TTG-GGAAGAA-------TGTAAAT-----ATG-ATGG--GA--AAAAATA--GCCAG-TT----GGAAAG-GGAATACAGCCGAAT--------A-TC-GCGGT---A-TTTGA--CCCCCAAAAAtagtaa
gi|14 : TA--ATA-AG-GTCAAATTCACAGAAC-ATCTCT-CCTGTTTGTG----TTTTT-----TC-TGA-TT---TTAAGGAAACCC-T--GGTTTT---G-AC-AT-aatcac
gi|15 : t-TT---TCTAATGTC-ATAAAA-----------AAATTGCCAG-T-ATTTGG-ACTC---TTAACTAAAG-TTGT---AAATTGCCTA--ATA-T
gi|17 : tAT---------CAGAAAACCTTTTGCTTACA---TGT-GCAGGGGTTTGGAG-AAT-AAAC-TG
gi|18 : GAAAC-AGCCGAAT--------A-TCGGTGGT---ATTTTGA--CTCCAAAAAA
gi|19 : GTATT--TT-TTCTTTG-TCAG-AAAAA-T--AT-TTATATATG--GTGatcact
gi|2 : acccAACAAA---TAGATGCCTATTATTTATTT---CTT-AGA--ATACTTCA-TT---TCTAATTTC-ATAAAAAAAAAAAAAAAAAAT-GCCAG-C-ATTTGG-ACTC---TTACTTAAAG-TTGT---GAATT-CCTA--ATA-TT-ATCAGGTTTACAGAACGATCTCT-CTTGTTAGTA-GCTTTTTT-----TC-TGA-TT---TTAGTGACACCC-TACAGTATT---GAAC-AT-TTCCTGTT---ATTAGCCT--ACC-CTTCATT--TT-GTG-----A----C----------------------------T----T---G---AT-TGGAAA-CTTTATAATGTACA-----TGCTAC-AAATCG-GCTTAATAA--ATGGAATAC-TC---T-ATTGT---TTTA-CCA---GTT-CAT---------CACATA---TTTTG-----A---TGTGGCAGGGGTATGGAG-AATAAAAC-TGGA-ATG-AAAAAA----CAATATT--TTCTTCTTTG-TCAGCAAAAATTTAATGTTACATACG--GTGATTCCTTG--GTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A---GTATCT-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTTGGGAGGG-AGAAACCAGCCGAATAAAAAAAAA-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|3 : AACAAA----GGATGACTATTATTTATTTTTTCTT-GAATTATCTTTTA-TTCTATTTATTTTT-TTAAAA-----------T--T-GCCAG-C-ATTTGG-ACTC---TTA-ACAAAGTTTGT---GAATTG-CTA--ATATTT-ATCAGGTCTACAGAA--ATGTTTCCCTGTTTTGA-GTTTTTTT-----TCTTGA--C---TTAGTGAAA-CT-TA-AGTA-T---GAAC-AT-TTCCTGTT---ATTA-CCT-AACC-TTTCAAT--GT--CA-----A----C--------------AA--------GGTTT----T---GT--ATCTGGGAA--TATACAAT----------CGCTAC---ATCT-GCTTA--AA--GTGG-ATAC-TC---CTATTGT---TTT
gi|4 : taaatgcataataataaatataaggaacaatgttttgggtttcattttatattgatttgaaatataattttttttttttttttT-GCATAATAATCAT---AT-C-TC---C-ATTGT---ATTACCCATGCATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGAGATGAAAAAAAACCCCAGTATT--TTC-TCTTTG-TCAG--AAAA-TTAAT-TTATATATG--GTGA-CTTTTG--TTTACAA--TTTTCTCTACAT-TTGAAA--TTGCGGAAAAAAT--AGGTGTAT--------TG-ATTG--GGAAAAAAATA--CCTAATTTTTT-GGGAGG-GGAAACCACCCAATT--------A-TCTGT-GC---ATTTTGG--CCtc
gi|5 : agtgcactagaatgataaaaaaAA-----------AAAT-ACCAG-C-ATTTGG-ACTC---TTACC-------------G----GCCTA--ATT-TTTATCAGGTTTACAGAAC-ATCTCT-CCTG-TTGTAGGGGCTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT---GAAC-AT-TTCCTGTT---ATTAGCCT-GACC-CTTCATTGGTT-TTG-----AACTTT--------------AA--------A--TT----T---GT--ATCTGGAAA-CTATATAAT----A-----TGCTTC-ACA-CT-GC-CACCGC--ATGG--TGC-TC---C-ATTggaaaaaaaat
gi|6 : TTTACAGAA-----------TGTTGGTT-CTCCCTTT-----TT-TGA-TT-----AGTGAAACCT-TGTAATGTT---GAAC-TT-TTTCTGTT---ATTAACCT-GACC-CTTTAATAATG-GCGGTCAAA----CTAAAAATGTCAGCAAG--------G--CTGGCTT---GT--ATCTGGGAA-CTATATAAT----ATACTTTGTTAT-ATATCT-ACT---TAA--ATGG-ATACTTC---C-ATTGT---TTTctcaactttttcactt
gi|7 : -CATT-CAT---------CACATAATCTTTTGC----A---CGT-GCAGGGATTTGGAA-AATAAAAC-TGGA-ATG-AAAAAA----C-GTATT--TTC-TCTTTG-TCAGC-AAAA-TCAAT-TTATATACG--ATGA-TTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GG-AAAAAT--A---GTAT-
gi|8 : acaACAGAAC-ATCTTT-CCTGTTTGTA-GCTTTTTT-----TC-TGA-CT---TTAGTGAAACCT-TAAAGTATT---GAAC-A--TTCCTGTT---ATTAGCCT-AACC-CTTCATG--TCAACA-----A----C--------------AA--------GGTTT----T---GT--ATCTGGGAA-CTATGTGAT----A-----CGCTAC-AAATCT-at
gi|9 : AACAAA---TAAGAGACTATTATTTATTTT--CTT-AGA--ATTACTTA-TC---TTT--TTT------AA-----------AAAT-GCCAG-C-ACTTAG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAAATATAAGGAACAACAAAATTTAATGTTTTGTTGAGTTCATTTTCATATCTGATTAGAAATCATGAAATAGTTTATAAACTCTTTT
Unaligned ( gi|16 ): GCTTGGATTTAGTCCACACAGTGGTTAAACATTCTAACATCCCAACTATACT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 1111 111 111 111 11 2222222222222222 111 111 11 11111 111 111 111 11 3333333333333333333333333333333333333333333333333333 111 33333333333 111111111 11111 111 2222 1 333333333 222222222 1 2222 1 11 11 44444444444444444 1 11 11 11 2 1 1 22222222 111 11
lowQualScore : 4444 111 88 444 6 111 00 8888888888888888 5 5 5 000 0 4 5 111 99 6 8 00 0 5 888 44444 5 55 000 5 66 000 5 5 111 5 00 6 2222222222222222222222222222222222222222222222222222 111 99 6 00000000000 999 5 555555555 6 1 6 33333 444 6 1111 0 222222222 1 6 777777777 8 1 8 5 8 8 0 3 5555 77 99 7 6 99 6 4 6 99 0 3 11 8 11 1 8 99 6 1 0 66666666666666666 0 33 33 33 0 3 0 0 5 99999999 8 5 444 0 11
lowQualScore : .... ... .. ... . ... .. ................ . . . ... . . . ... .. . . .. . . ... ..... . .. ... . .. ... . . ... . .. . .................................................... ... .. . ........... ... . ......... . . . ..... ... . .... . ......... . . ......... . . . . . . . . .... .. .. . . .. . . . .. . . .. . .. . . .. . . . ................. . .. .. .. . . . . . ........ . . ... . ..
lowQualScore : 8888 888 88 000 7 777 33 6666666666666666 7 7 7 000 7 0 7 777 22 7 0 00 4 7 666 33333 7 99 000 7 77 000 7 7 777 2 33 7 0000000000000000000000000000000000000000000000000000 777 22 7 77777777777 222 7 000000000 7 7 7 77777 000 7 7777 0 000000000 4 0 000000000 0 4 0 6 0 0 8 6 0000 55 22 3 7 88 7 2 7 22 6 8 00 0 00 4 0 22 7 7 8 00000000000000000 0 88 88 88 0 2 0 0 0 00000000 0 0 000 8 00
consensus : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT---GAAC-AT-TTCCTGTT---ATTAGCCT-GACC-CTTCATT--------------------TT-TCG----A----CAA--------GGT---TTT---GT--ATCTGGGAA-CTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
Reference ( family-2576 ) : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT---GAAC-AT-TTCCTGTT---ATTAGCCT-GACC-CTTCATT--------------------TT-NCG----A----CAA--------G-----TTT---GT--ATCTGGGAA-CTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|1 : AACAAAAATTAGATGACTATTATTTATTTT--CTTTAGAATTAT---TCA-TT---TCTAATTTTGATAAAA-----------CTCT-GCCAGGCGATTTGGTACCTGCTTTACCTAAAG-TCGTAACGAGTTGCCTATCATT-TT-AT-AGGTTTACAGAAC-ATCCTC-CCTGTTTGTA-GTTTTTTTGTGTGTG-TGAGTTATATTAGTGAACCATGTACAGTATTTGGAAACTATATTCGTGCTTATATTACCATAGACCACTTCCTT--------------------TG-TCGGGAAA----CAAACATAAGTG-----TTTTTGGTTCATCTGGAAAACTATATAAT----A-----TGCTACGAAATCTAGCTTAAT-T--ATGG-ACAT-TCTTGT-GTTGTTTCTTTA-C-AT-CATTCCATCAAAATCCGCACAAATCTTTTTGA----ACCTTGT-GCAGTGGTATGGTGAAATCCAACTTGGA-ATGAAAAAAAT---CGATACTTATTCTT-TTTGTTCAGCAAAAA-ATAAT-GTATTAACGGAGTGTTTTTCTGCTTTT-TGAATTTTTCTCTTAATGTTAAAATTTTG-GAGAATAATAAA--TGTAA-TCTAAAATGAATTGCCGG--AAAAATAGCCTCAAGTTTTT-GGAGGGCACAAACGAGCCGAAT--------ACTCGGTGGTTGCATATTGATCCTCCCAGAAA
gi|10 : gattttatcgggtgatttttaactaaccaccttacacctctatctcctattgaattgggtgaaaacattagcgaggacatttttctcaaattgggaaaaatcattttagtaaattaagttgataaataaatgcataaaataatgagaattatataggaacaacaaatgttttgtttgagatccattttatatctgattagaatcatgaaataaatcttttttctAACAAA---TAGATAACTATTATTTATGTT--CAT-AGAATTAC---TTATTT---TCTAATGTC-ATTTAC-----------AAA--GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGatatgcaactgattgtgtcacagcagttttaccatctaaattatatt
gi|11 : ttttaGGA-A--GAAAAAA----CA-TATT--TTCT-CTTTG-TCAGCAAA---TCAAT-TTATATATG--GTGATTTT-TG--TTT-TGA--TTTCCTCTTCAT-TTGAAA--TTG-GGAAAAAca
gi|12 : TGAAA--TTG-GGAAGAA-------TGTAAAT-----ATG-ATGG--GA--AAAAATA--GCCAG-TT----GGAAAG-GGAATACAGCCGAAT--------A-TC-GCGGT---A-TTTGA--CCCCCAAAAAtagtaa
gi|14 : TA--ATA-AG-GTCAAATTCACAGAAC-ATCTCT-CCTGTTTGTG----TTTTT-----TC-TGA-TT---TTAAGGAAACCC-T--GGTTTT---G-AC-AT-aatcac
gi|15 : t-TT---TCTAATGTC-ATAAAA-----------AAATTGCCAG-T-ATTTGG-ACTC---TTAACTAAAG-TTGT---AAATTGCCTA--ATA-T
gi|17 : tAT---------CAGAAAACCTTTTGCTTACA---TGT-GCAGGGGTTTGGAG-AAT-AAAC-TG
gi|18 : GAAAC-AGCCGAAT--------A-TCGGTGGT---ATTTTGA--CTCCAAAAAA
gi|19 : GTATT--TT-TTCTTTG-TCAG-AAAAA-T--AT-TTATATATG--GTGatcact
gi|2 : acccAACAAA---TAGATGCCTATTATTTATTT---CTT-AGAATACT---TCA-TT---TCTAATTTC-ATAAAAAAAAAAAAAAAAAAT-GCCAG-C-ATTTGG-ACTC---TTACTTAAAG-TTGT---GAATT-CCTA--ATA-TT-ATCAGGTTTACAGAACGATCTCT-CTTGTTAGTA-GCTTTTTT-----TC-TGA-TT---TTAGTGACACCC-TACAGTATT---GAAC-AT-TTCCTGTT---ATTAGCCT--ACC-CTTCATT--------------------TT-GTG----A----C-----------------TT---G---AT-TGGAAA-CTTTATAATGTACA-----TGCTAC-AAATCG-GCTTAATAA--ATGGAATAC-TC---T-ATTGT---TTTACC-A---GTT-CAT---------CACATA---TTTTG-----A---TGTGGCAGGGGTATGGAG-AATAAAAC-TGGA-ATG-AAAAAA----CAATATT--TTCTTCTTTG-TCAGCAAAAATTTAATGTTACATACG--GTGATTCCTTG--GTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A---GTATCT-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTTGGGAGGG-AGAAACCAGCCGAATAAAAAAAAA-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|3 : AACAAA----GGATGACTATTATTTATTTTTTCTT--GAATTATCTTTTA-TTCTATTTATTTTT-TTAAAA-----------T--T-GCCAG-C-ATTTGG-ACTC---TTA-ACAAAGTTTGT---GAATTG-CTA--ATATTT-ATCAGGTCTACAGAA--ATGTTTCCCTGTTTTGA-GTTTTTTT-----TCTTGA--C---TTAGTGAAA-CT-TA-AGTA-T---GAAC-AT-TTCCTGTT---ATTA-CCT-AACC-TTTCAAT--------------------GT--CA----A----CAA--------GGT---TTT---GT--ATCTGGGAA--TATACAAT----------CGCTAC---ATCT-GCTTA--AA--GTGG-ATAC-TC---CTATTGT---TTT
gi|4 : taaatgcataataataaatataaggaacaatgttttgggtttcattttatattgatttgaaatataattttttttttttttttT-GCATAATAATCAT---AT-C-TC---C-ATTGT---ATTACCCATGCATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGAGATGAAAAAAAACCCCAGTATT--TTC-TCTTTG-TCAG--AAAA-TTAAT-TTATATATG--GTGA-CTTTTG--TTTACAA--TTTTCTCTACAT-TTGAAA--TTGCGGAAAAAAT--AGGTGTAT--------TG-ATTG--GGAAAAAAATA--CCTAATTTTTT-GGGAGG-GGAAACCACCCAATT--------A-TCTGT-GC---ATTTTGG--CCtc
gi|5 : agtgcactagaatgataaaaaaAA-----------AAAT-ACCAG-C-ATTTGG-ACTC---TTACC-------------G----GCCTA--ATT-TTTATCAGGTTTACAGAAC-ATCTCT-CCTG-TTGTAGGGGCTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT---GAAC-AT-TTCCTGTT---ATTAGCCT-GACC-CTTCATTGG------------------TT-TTG----AACTTTAA--------A-----TTT---GT--ATCTGGAAA-CTATATAAT----A-----TGCTTC-ACA-CT-GC-CACCGC--ATGG--TGC-TC---C-ATTggaaaaaaaat
gi|6 : TTTACAGAA-----------TGTTGGTT-CTCCCTTT-----TT-TGA-TT-----AGTGAAACCT-TGTAATGTT---GAAC-TT-TTTCTGTT---ATTAACCT-GACC-CTTTAATAATGGCGGTCAAACTAAAAATG-TCA----G----CAA--------GGCTGGCTT---GT--ATCTGGGAA-CTATATAAT----ATACTTTGTTAT-ATATCT-ACT---TAA--ATGG-ATACTTC---C-ATTGT---TTTctcaactttttcactt
gi|7 : -CATT-CAT---------CACATAATCTTTTGC----A---CGT-GCAGGGATTTGGAA-AATAAAAC-TGGA-ATG-AAAAAA----C-GTATT--TTC-TCTTTG-TCAGC-AAAA-TCAAT-TTATATACG--ATGA-TTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GG-AAAAAT--A---GTAT-
gi|8 : acaACAGAAC-ATCTTT-CCTGTTTGTA-GCTTTTTT-----TC-TGA-CT---TTAGTGAAACCT-TAAAGTATT---GAAC-A--TTCCTGTT---ATTAGCCT-AACC-CTTCATG--------------------TCAACA----A----CAA--------GGT---TTT---GT--ATCTGGGAA-CTATGTGAT----A-----CGCTAC-AAATCT-at
gi|9 : AACAAA---TAAGAGACTATTATTTATTTT--CTT-AGAATTAC---TTA-TC---TTT--TTT------AA-----------AAAT-GCCAG-C-ACTTAG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAAATATAAGGAACAACAAAATTTAATGTTTTGTTGAGTTCATTTTCATATCTGATTAGAAATCATGAAATAGTTTATAAACTCTTTT
Unaligned ( gi|16 ): GCTTGGATTTAGTCCACACAGTGGTTAAACATTCTAACATCCCAACTATACT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 111 111 111 11 2222222222222222 111 111 11 11111 111 111 11 000000000000000000000000000000000000000000000000000000 33333333333 111111111 11111 111 2222 1 333333333 222222222 1 2222 1 11 11 44444444444444444 1 11 11 11 2 1 1 22222222 111 11
lowQualScore : 4444 111 88 444 6 111 00 8888888888888888 5 5 5 000 0 4 5 111 99 6 8 00 0 5 888 44444 5 55 000 5 66 77 77 5 111 5 00 6 222222222222222222222222222222222222222222222222222222 99 99 6 00000000000 999 5 555555555 6 1 6 33333 444 6 1111 0 222222222 1 6 777777777 8 1 8 5 8 8 0 3 5555 77 99 7 6 99 6 4 6 99 0 3 11 8 11 1 8 99 6 1 0 66666666666666666 0 33 33 33 0 3 0 0 5 99999999 8 5 444 0 11
lowQualScore : .... ... .. ... . ... .. ................ . . . ... . . . ... .. . . .. . . ... ..... . .. ... . .. .. .. . ... . .. . ...................................................... .. .. . ........... ... . ......... . . . ..... ... . .... . ......... . . ......... . . . . . . . . .... .. .. . . .. . . . .. . . .. . .. . . .. . . . ................. . .. .. .. . . . . . ........ . . ... . ..
lowQualScore : 8888 888 88 000 7 777 33 6666666666666666 7 7 7 000 7 0 7 777 22 7 0 00 4 7 666 33333 7 99 000 7 77 99 99 7 777 2 33 7 555555555555555555555555555555555555555555555555555555 22 22 7 77777777777 222 7 000000000 7 7 7 77777 000 7 7777 0 000000000 4 0 000000000 0 4 0 6 0 0 8 6 0000 55 22 3 7 88 7 2 7 22 6 8 00 0 00 4 0 22 7 7 8 00000000000000000 0 88 88 88 0 2 0 0 0 00000000 0 0 000 8 00
consensus : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCATT--------------------TN-TCG----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
Reference ( family-2576 ) : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCATT--------------------TT-TCG----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|1 : AACAAAAATTAGATGACTATTATTTATTTT--CTTTAGAATTAT---TCA-TT---TCTAATTTTGATAAAA-----------CTCT-GCCAGGCGATTTGGTACCTGCTTTACCTAAAG-TCGTAACGAGTTGCCTATCATT-TT-AT-AGGTTTACAGAAC-ATCCTC-CCTGTTTGTA-GTTTTTTTGTGTGTG-TGAGTTATATTAGTGAACCATGTACAGTATTTGGAAACTATATTCGTGCTTATATTACCATAGACCACTTCCTT--------------------TG-TCGGGAAA----CAAACATAAGTGTT---TTTGGTTCATCTGGAAAACTATATAAT----A-----TGCTACGAAATCTAGCTTAAT-T--ATGG-ACAT-TCTTGT-GTTGTTTCTTTA-C-AT-CATTCCATCAAAATCCGCACAAATCTTTTTGA----ACCTTGT-GCAGTGGTATGGTGAAATCCAACTTGGA-ATGAAAAAAAT---CGATACTTATTCTT-TTTGTTCAGCAAAAA-ATAAT-GTATTAACGGAGTGTTTTTCTGCTTTT-TGAATTTTTCTCTTAATGTTAAAATTTTG-GAGAATAATAAA--TGTAA-TCTAAAATGAATTGCCGG--AAAAATAGCCTCAAGTTTTT-GGAGGGCACAAACGAGCCGAAT--------ACTCGGTGGTTGCATATTGATCCTCCCAGAAA
gi|10 : gattttatcgggtgatttttaactaaccaccttacacctctatctcctattgaattgggtgaaaacattagcgaggacatttttctcaaattgggaaaaatcattttagtaaattaagttgataaataaatgcataaaataatgagaattatataggaacaacaaatgttttgtttgagatccattttatatctgattagaatcatgaaataaatcttttttctAACAAA---TAGATAACTATTATTTATGTT--CAT-AGAATTAC---TTATTT---TCTAATGTC-ATTTAC-----------AAA--GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGatatgcaactgattgtgtcacagcagttttaccatctaaattatatt
gi|11 : ttttaGGA-A--GAAAAAA----CA-TATT--TTCT-CTTTG-TCAGCAAA---TCAAT-TTATATATG--GTGATTTT-TG--TTT-TGA--TTTCCTCTTCAT-TTGAAA--TTG-GGAAAAAca
gi|12 : TGAAA--TTG-GGAAGAA-------TGTAAAT-----ATG-ATGG--GA--AAAAATA--GCCAG-TT----GGAAAG-GGAATACAGCCGAAT--------A-TC-GCGGT---A-TTTGA--CCCCCAAAAAtagtaa
gi|14 : TA--ATA-AG-GTCAAATTCACAGAAC-ATCTCT-CCTGTTTGTG----TTTTT-----TC-TGA-TT---TTAAGGAAACCC-T--GGTTTT--G-A--CAT-aatcac
gi|15 : t-TT---TCTAATGTC-ATAAAA-----------AAATTGCCAG-T-ATTTGG-ACTC---TTAACTAAAG-TTGT---AAATTGCCTA--ATA-T
gi|17 : tAT---------CAGAAAACCTTTTGCTTACA---TGT-GCAGGGGTTTGGAG-AAT-AAAC-TG
gi|18 : GAAAC-AGCCGAAT--------A-TCGGTGGT---ATTTTGA--CTCCAAAAAA
gi|19 : GTATT--TT-TTCTTTG-TCAG-AAAAA-T--AT-TTATATATG--GTGatcact
gi|2 : acccAACAAA---TAGATGCCTATTATTTATTT---CTT-AGAATACT---TCA-TT---TCTAATTTC-ATAAAAAAAAAAAAAAAAAAT-GCCAG-C-ATTTGG-ACTC---TTACTTAAAG-TTGT---GAATT-CCTA--ATA-TT-ATCAGGTTTACAGAACGATCTCT-CTTGTTAGTA-GCTTTTTT-----TC-TGA-TT---TTAGTGACACCC-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT--ACC-CTTCATT--------------------TT-GTG----A----C----------------TT--G---AT-TGG-AAACTTTATAATGTACA-----TGCTAC-AAATCG-GCTTAATAA--ATGGAATAC-TC---T-ATTGT---TTTACC-A---GTT-CAT---------CACATA---TTTTG-----A---TGTGGCAGGGGTATGGAG-AATAAAAC-TGGA-ATG-AAAAAA----CAATATT--TTCTTCTTTG-TCAGCAAAAATTTAATGTTACATACG--GTGATTCCTTG--GTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A---GTATCT-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTTGGGAGGG-AGAAACCAGCCGAATAAAAAAAAA-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|3 : AACAAA----GGATGACTATTATTTATTTTTTCTT--GAATTATCTTTTA-TTCTATTTATTTTT-TTAAAA-----------T--T-GCCAG-C-ATTTGG-ACTC---TTA-ACAAAGTTTGT---GAATTG-CTA--ATATTT-ATCAGGTCTACAGAA--ATGTTTCCCTGTTTTGA-GTTTTTTT-----TCTTGA--C---TTAGTGAAA-CT-TA-AGTA-T--GAA--CAT-TTCCTGT---TATTA-CCT-AACC-TTTCA-A--------------------TG-TCA----A----CAAG-------GTT---TT--GT--ATCTGG-GAA-TATACAAT----------CGCTAC---ATCT-GCTTA--AA--GTGG-ATAC-TC---CTATTGT---TTT
gi|4 : taaatgcataataataaatataaggaacaatgttttgggtttcattttatattgatttgaaatataattttttttttttttttT-GCATAATAATCAT---AT-C-TC---C-ATTGT---ATTACCCATGCATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGAGATGAAAAAAAACCCCAGTATT--TTC-TCTTTG-TCAG--AAAA-TTAAT-TTATATATG--GTGA-CTTTTG--TTTACAA--TTTTCTCTACAT-TTGAAA--TTGCGGAAAAAAT--AGGTGTAT--------TG-ATTG--GGAAAAAAATA--CCTAATTTTTT-GGGAGG-GGAAACCACCCAATT--------A-TCTGT-GC---ATTTTGG--CCtc
gi|5 : agtgcactagaatgataaaaaaAA-----------AAAT-ACCAG-C-ATTTGG-ACTC---TTACC-------------G----GCCTA--ATT-TTTATCAGGTTTACAGAAC-ATCTCT-CCTG-TTGTAGGGGCTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCATTGG------------------TT-TTG----AACTTTAAA---------T---TT--GT--ATCTGG-AAACTATATAAT----A-----TGCTTC-ACA-CT-GC-CACCGC--ATGG--TGC-TC---C-ATTggaaaaaaaat
gi|6 : TTTACAGAA-----------TGTTGGTT-CTCCCTTT-----TT-TGA-TT-----AGTGAAACCT-TGTAATGTT--GAA--CTT-TTTCTGT---TATTAACCT-GACC-CTTTAATAATGGCGGTCAAACTAAAAATG-TCA----G----CAAG-------GCTGGCTT--GT--ATCTGG-GAACTATATAAT----ATACTTTGTTAT-ATATCT-ACT---TAA--ATGG-ATACTTC---C-ATTGT---TTTctcaactttttcactt
gi|7 : -CATT-CAT---------CACATAATCTTTTGC----A---CGT-GCAGGGATTTGGAA-AATAAAAC-TGGA-ATG-AAAAAA----C-GTATT--TTC-TCTTTG-TCAGC-AAAA-TCAAT-TTATATACG--ATGA-TTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GG-AAAAAT--A---GTAT-
gi|8 : acaACAGAAC-ATCTTT-CCTGTTTGTA-GCTTTTTT-----TC-TGA-CT---TTAGTGAAACCT-TAAAGTATT--GAA--CA--TTCCTGT---TATTAGCCT-AACC-CTTCATG--------------------TCAACA----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATGTGAT----A-----CGCTAC-AAATCT-at
gi|9 : AACAAA---TAAGAGACTATTATTTATTTT--CTT-AGAATTAC---TTA-TC---TTT--TTT------AA-----------AAAT-GCCAG-C-ACTTAG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAAATATAAGGAACAACAAAATTTAATGTTTTGTTGAGTTCATTTTCATATCTGATTAGAAATCATGAAATAGTTTATAAACTCTTTT
Unaligned ( gi|16 ): GCTTGGATTTAGTCCACACAGTGGTTAAACATTCTAACATCCCAACTATACT
Alignments
lowQualScore : 1111 111 111 111 11 2222222222222222 111 111 11 11111 111 111 11 999999999999999999999999999999999999999999999999999999 33333333333 111111111 11111 111 2222 1 333333333 222222222 1 2222 1 11 11 44444444444444444 1 11 11 11 2 1 1 22222222 111 11
lowQualScore : 4444 111 88 444 6 111 00 8888888888888888 5 5 5 000 0 4 5 111 99 6 8 00 0 5 888 44444 5 55 000 5 66 77 77 5 111 5 00 6 666666666666666666666666666666666666666666666666666666 99 99 6 00000000000 999 5 555555555 6 1 6 33333 444 6 1111 0 222222222 1 6 777777777 8 1 8 5 8 8 0 3 5555 77 99 7 6 99 6 4 6 99 0 3 11 8 11 1 8 99 6 1 0 66666666666666666 0 33 33 33 0 3 0 0 5 99999999 8 5 444 0 11
lowQualScore : .... ... .. ... . ... .. ................ . . . ... . . . ... .. . . .. . . ... ..... . .. ... . .. .. .. . ... . .. . ...................................................... .. .. . ........... ... . ......... . . . ..... ... . .... . ......... . . ......... . . . . . . . . .... .. .. . . .. . . . .. . . .. . .. . . .. . . . ................. . .. .. .. . . . . . ........ . . ... . ..
lowQualScore : 8888 888 88 000 7 777 33 6666666666666666 7 7 7 000 7 0 7 777 22 7 0 00 4 7 666 33333 7 99 000 7 77 99 99 7 777 2 33 7 555555555555555555555555555555555555555555555555555555 22 22 7 77777777777 222 7 000000000 7 7 7 77777 000 7 7777 0 000000000 4 0 000000000 0 4 0 6 0 0 8 6 0000 55 22 3 7 88 7 2 7 22 6 8 00 0 00 4 0 22 7 7 8 00000000000000000 0 88 88 88 0 2 0 0 0 00000000 0 0 000 8 00
consensus : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCAT-T--------------------TGTCG----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
Reference ( family-2576 ) : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCAT-T--------------------TNTCG----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|1 : AACAAAAATTAGATGACTATTATTTATTTT--CTTTAGAATTAT---TCA-TT---TCTAATTTTGATAAAA-----------CTCT-GCCAGGCGATTTGGTACCTGCTTTACCTAAAG-TCGTAACGAGTTGCCTATCATT-TT-AT-AGGTTTACAGAAC-ATCCTC-CCTGTTTGTA-GTTTTTTTGTGTGTG-TGAGTTATATTAGTGAACCATGTACAGTATTTGGAAACTATATTCGTGCTTATATTACCATAGACCACTTCCT-T--------------------TGTCGGGAAA----CAAACATAAGTGTT---TTTGGTTCATCTGGAAAACTATATAAT----A-----TGCTACGAAATCTAGCTTAAT-T--ATGG-ACAT-TCTTGT-GTTGTTTCTTTA-C-AT-CATTCCATCAAAATCCGCACAAATCTTTTTGA----ACCTTGT-GCAGTGGTATGGTGAAATCCAACTTGGA-ATGAAAAAAAT---CGATACTTATTCTT-TTTGTTCAGCAAAAA-ATAAT-GTATTAACGGAGTGTTTTTCTGCTTTT-TGAATTTTTCTCTTAATGTTAAAATTTTG-GAGAATAATAAA--TGTAA-TCTAAAATGAATTGCCGG--AAAAATAGCCTCAAGTTTTT-GGAGGGCACAAACGAGCCGAAT--------ACTCGGTGGTTGCATATTGATCCTCCCAGAAA
gi|10 : gattttatcgggtgatttttaactaaccaccttacacctctatctcctattgaattgggtgaaaacattagcgaggacatttttctcaaattgggaaaaatcattttagtaaattaagttgataaataaatgcataaaataatgagaattatataggaacaacaaatgttttgtttgagatccattttatatctgattagaatcatgaaataaatcttttttctAACAAA---TAGATAACTATTATTTATGTT--CAT-AGAATTAC---TTATTT---TCTAATGTC-ATTTAC-----------AAA--GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGatatgcaactgattgtgtcacagcagttttaccatctaaattatatt
gi|11 : ttttaGGA-A--GAAAAAA----CA-TATT--TTCT-CTTTG-TCAGCAAA---TCAAT-TTATATATG--GTGATTTT-TG--TTT-TGA--TTTCCTCTTCAT-TTGAAA--TTG-GGAAAAAca
gi|12 : TGAAA--TTG-GGAAGAA-------TGTAAAT-----ATG-ATGG--GA--AAAAATA--GCCAG-TT----GGAAAG-GGAATACAGCCGAAT--------A-TC-GCGGT---A-TTTGA--CCCCCAAAAAtagtaa
gi|14 : TA--ATA-AG-GTCAAATTCACAGAAC-ATCTCT-CCTGTTTGTG----TTTTT-----TC-TGA-TT---TTAAGGAAACCC-T--GGTTTT--G-A--CAT-aatcac
gi|15 : t-TT---TCTAATGTC-ATAAAA-----------AAATTGCCAG-T-ATTTGG-ACTC---TTAACTAAAG-TTGT---AAATTGCCTA--ATA-T
gi|17 : tAT---------CAGAAAACCTTTTGCTTACA---TGT-GCAGGGGTTTGGAG-AAT-AAAC-TG
gi|18 : GAAAC-AGCCGAAT--------A-TCGGTGGT---ATTTTGA--CTCCAAAAAA
gi|19 : GTATT--TT-TTCTTTG-TCAG-AAAAA-T--AT-TTATATATG--GTGatcact
gi|2 : acccAACAAA---TAGATGCCTATTATTTATTT---CTT-AGAATACT---TCA-TT---TCTAATTTC-ATAAAAAAAAAAAAAAAAAAT-GCCAG-C-ATTTGG-ACTC---TTACTTAAAG-TTGT---GAATT-CCTA--ATA-TT-ATCAGGTTTACAGAACGATCTCT-CTTGTTAGTA-GCTTTTTT-----TC-TGA-TT---TTAGTGACACCC-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT--ACC-CTTCAT-T--------------------TTGTG----A----C----------------TT--G---AT-TGG-AAACTTTATAATGTACA-----TGCTAC-AAATCG-GCTTAATAA--ATGGAATAC-TC---T-ATTGT---TTTACC-A---GTT-CAT---------CACATA---TTTTG-----A---TGTGGCAGGGGTATGGAG-AATAAAAC-TGGA-ATG-AAAAAA----CAATATT--TTCTTCTTTG-TCAGCAAAAATTTAATGTTACATACG--GTGATTCCTTG--GTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A---GTATCT-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTTGGGAGGG-AGAAACCAGCCGAATAAAAAAAAA-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|3 : AACAAA----GGATGACTATTATTTATTTTTTCTT--GAATTATCTTTTA-TTCTATTTATTTTT-TTAAAA-----------T--T-GCCAG-C-ATTTGG-ACTC---TTA-ACAAAGTTTGT---GAATTG-CTA--ATATTT-ATCAGGTCTACAGAA--ATGTTTCCCTGTTTTGA-GTTTTTTT-----TCTTGA--C---TTAGTGAAA-CT-TA-AGTA-T--GAA--CAT-TTCCTGT---TATTA-CCT-AACC-TTTCA--A--------------------TGTCA----A----CAAG-------GTT---TT--GT--ATCTGG-GAA-TATACAAT----------CGCTAC---ATCT-GCTTA--AA--GTGG-ATAC-TC---CTATTGT---TTT
gi|4 : taaatgcataataataaatataaggaacaatgttttgggtttcattttatattgatttgaaatataattttttttttttttttT-GCATAATAATCAT---AT-C-TC---C-ATTGT---ATTACCCATGCATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGAGATGAAAAAAAACCCCAGTATT--TTC-TCTTTG-TCAG--AAAA-TTAAT-TTATATATG--GTGA-CTTTTG--TTTACAA--TTTTCTCTACAT-TTGAAA--TTGCGGAAAAAAT--AGGTGTAT--------TG-ATTG--GGAAAAAAATA--CCTAATTTTTT-GGGAGG-GGAAACCACCCAATT--------A-TCTGT-GC---ATTTTGG--CCtc
gi|5 : agtgcactagaatgataaaaaaAA-----------AAAT-ACCAG-C-ATTTGG-ACTC---TTACC-------------G----GCCTA--ATT-TTTATCAGGTTTACAGAAC-ATCTCT-CCTG-TTGTAGGGGCTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCAT-TGG------------------TTTTG----AACTTTAAA---------T---TT--GT--ATCTGG-AAACTATATAAT----A-----TGCTTC-ACA-CT-GC-CACCGC--ATGG--TGC-TC---C-ATTggaaaaaaaat
gi|6 : TTTACAGAA-----------TGTTGGTT-CTCCCTTT-----TT-TGA-TT-----AGTGAAACCT-TGTAATGTT--GAA--CTT-TTTCTGT---TATTAACCT-GACC-CTTTAA-TAATGGCGGTCAAACTAAAAATGTCA----G----CAAG-------GCTGGCTT--GT--ATCTGG-GAACTATATAAT----ATACTTTGTTAT-ATATCT-ACT---TAA--ATGG-ATACTTC---C-ATTGT---TTTctcaactttttcactt
gi|7 : -CATT-CAT---------CACATAATCTTTTGC----A---CGT-GCAGGGATTTGGAA-AATAAAAC-TGGA-ATG-AAAAAA----C-GTATT--TTC-TCTTTG-TCAGC-AAAA-TCAAT-TTATATACG--ATGA-TTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GG-AAAAAT--A---GTAT-
gi|8 : acaACAGAAC-ATCTTT-CCTGTTTGTA-GCTTTTTT-----TC-TGA-CT---TTAGTGAAACCT-TAAAGTATT--GAA--CA--TTCCTGT---TATTAGCCT-AACC-CTTCATGT--------------------CAACA----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATGTGAT----A-----CGCTAC-AAATCT-at
gi|9 : AACAAA---TAAGAGACTATTATTTATTTT--CTT-AGAATTAC---TTA-TC---TTT--TTT------AA-----------AAAT-GCCAG-C-ACTTAG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAAATATAAGGAACAACAAAATTTAATGTTTTGTTGAGTTCATTTTCATATCTGATTAGAAATCATGAAATAGTTTATAAACTCTTTT
Unaligned ( gi|16 ): GCTTGGATTTAGTCCACACAGTGGTTAAACATTCTAACATCCCAACTATACT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 111 111 111 11 2222222222222222 111 111 11 11111 111 111 11 000000000000000000000000000000000000000000000000000000000 33333333333 111111111 11111 111 2222 1 333333333 222222222 1 2222 1 11 11 44444444444444444 1 11 11 11 2 1 1 22222222 111 11
lowQualScore : 4444 111 88 444 6 111 00 8888888888888888 5 5 5 000 0 4 5 111 99 6 8 00 0 5 888 44444 5 55 000 5 66 77 77 5 111 5 00 6 000000000000000000000000000000000000000000000000000000000 99 99 6 00000000000 999 5 555555555 6 1 6 33333 444 6 1111 0 222222222 1 6 777777777 8 1 8 5 8 8 0 3 5555 77 99 7 6 99 6 4 6 99 0 3 11 8 11 1 8 99 6 1 0 66666666666666666 0 33 33 33 0 3 0 0 5 99999999 8 5 444 0 11
lowQualScore : .... ... .. ... . ... .. ................ . . . ... . . . ... .. . . .. . . ... ..... . .. ... . .. .. .. . ... . .. . ......................................................... .. .. . ........... ... . ......... . . . ..... ... . .... . ......... . . ......... . . . . . . . . .... .. .. . . .. . . . .. . . .. . .. . . .. . . . ................. . .. .. .. . . . . . ........ . . ... . ..
lowQualScore : 8888 888 88 000 7 777 33 6666666666666666 7 7 7 000 7 0 7 777 22 7 0 00 4 7 666 33333 7 99 000 7 77 99 99 7 777 2 33 7 555555555555555555555555555555555555555555555555555555555 22 22 7 77777777777 222 7 000000000 7 7 7 77777 000 7 7777 0 000000000 4 0 000000000 0 4 0 6 0 0 8 6 0000 55 22 3 7 88 7 2 7 22 6 8 00 0 00 4 0 22 7 7 8 00000000000000000 0 88 88 88 0 2 0 0 0 00000000 0 0 000 8 00
consensus : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCA-T-T--------------------TG--TCG----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
Reference ( family-2576 ) : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCA-T-T--------------------TG--TCG----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|1 : AACAAAAATTAGATGACTATTATTTATTTT--CTTTAGAATTAT---TCA-TT---TCTAATTTTGATAAAA-----------CTCT-GCCAGGCGATTTGGTACCTGCTTTACCTAAAG-TCGTAACGAGTTGCCTATCATT-TT-AT-AGGTTTACAGAAC-ATCCTC-CCTGTTTGTA-GTTTTTTTGTGTGTG-TGAGTTATATTAGTGAACCATGTACAGTATTTGGAAACTATATTCGTGCTTATATTACCATAGACCACTTCC-T-T--------------------TG--TCGGGAAA----CAAACATAAGTGTT---TTTGGTTCATCTGGAAAACTATATAAT----A-----TGCTACGAAATCTAGCTTAAT-T--ATGG-ACAT-TCTTGT-GTTGTTTCTTTA-C-AT-CATTCCATCAAAATCCGCACAAATCTTTTTGA----ACCTTGT-GCAGTGGTATGGTGAAATCCAACTTGGA-ATGAAAAAAAT---CGATACTTATTCTT-TTTGTTCAGCAAAAA-ATAAT-GTATTAACGGAGTGTTTTTCTGCTTTT-TGAATTTTTCTCTTAATGTTAAAATTTTG-GAGAATAATAAA--TGTAA-TCTAAAATGAATTGCCGG--AAAAATAGCCTCAAGTTTTT-GGAGGGCACAAACGAGCCGAAT--------ACTCGGTGGTTGCATATTGATCCTCCCAGAAA
gi|10 : gattttatcgggtgatttttaactaaccaccttacacctctatctcctattgaattgggtgaaaacattagcgaggacatttttctcaaattgggaaaaatcattttagtaaattaagttgataaataaatgcataaaataatgagaattatataggaacaacaaatgttttgtttgagatccattttatatctgattagaatcatgaaataaatcttttttctAACAAA---TAGATAACTATTATTTATGTT--CAT-AGAATTAC---TTATTT---TCTAATGTC-ATTTAC-----------AAA--GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGatatgcaactgattgtgtcacagcagttttaccatctaaattatatt
gi|11 : ttttaGGA-A--GAAAAAA----CA-TATT--TTCT-CTTTG-TCAGCAAA---TCAAT-TTATATATG--GTGATTTT-TG--TTT-TGA--TTTCCTCTTCAT-TTGAAA--TTG-GGAAAAAca
gi|12 : TGAAA--TTG-GGAAGAA-------TGTAAAT-----ATG-ATGG--GA--AAAAATA--GCCAG-TT----GGAAAG-GGAATACAGCCGAAT--------A-TC-GCGGT---A-TTTGA--CCCCCAAAAAtagtaa
gi|14 : TA--ATA-AG-GTCAAATTCACAGAAC-ATCTCT-CCTGTTTGTG----TTTTT-----TC-TGA-TT---TTAAGGAAACCC-T--GGTTTT--G-A--CAT-aatcac
gi|15 : t-TT---TCTAATGTC-ATAAAA-----------AAATTGCCAG-T-ATTTGG-ACTC---TTAACTAAAG-TTGT---AAATTGCCTA--ATA-T
gi|17 : tAT---------CAGAAAACCTTTTGCTTACA---TGT-GCAGGGGTTTGGAG-AAT-AAAC-TG
gi|18 : GAAAC-AGCCGAAT--------A-TCGGTGGT---ATTTTGA--CTCCAAAAAA
gi|19 : GTATT--TT-TTCTTTG-TCAG-AAAAA-T--AT-TTATATATG--GTGatcact
gi|2 : acccAACAAA---TAGATGCCTATTATTTATTT---CTT-AGAATACT---TCA-TT---TCTAATTTC-ATAAAAAAAAAAAAAAAAAAT-GCCAG-C-ATTTGG-ACTC---TTACTTAAAG-TTGT---GAATT-CCTA--ATA-TT-ATCAGGTTTACAGAACGATCTCT-CTTGTTAGTA-GCTTTTTT-----TC-TGA-TT---TTAGTGACACCC-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT--ACC-CTTCATT-T--------------------TG--T-G----A----C----------------TT--G---AT-TGG-AAACTTTATAATGTACA-----TGCTAC-AAATCG-GCTTAATAA--ATGGAATAC-TC---T-ATTGT---TTTACC-A---GTT-CAT---------CACATA---TTTTG-----A---TGTGGCAGGGGTATGGAG-AATAAAAC-TGGA-ATG-AAAAAA----CAATATT--TTCTTCTTTG-TCAGCAAAAATTTAATGTTACATACG--GTGATTCCTTG--GTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A---GTATCT-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTTGGGAGGG-AGAAACCAGCCGAATAAAAAAAAA-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|3 : AACAAA----GGATGACTATTATTTATTTTTTCTT--GAATTATCTTTTA-TTCTATTTATTTTT-TTAAAA-----------T--T-GCCAG-C-ATTTGG-ACTC---TTA-ACAAAGTTTGT---GAATTG-CTA--ATATTT-ATCAGGTCTACAGAA--ATGTTTCCCTGTTTTGA-GTTTTTTT-----TCTTGA--C---TTAGTGAAA-CT-TA-AGTA-T--GAA--CAT-TTCCTGT---TATTA-CCT-AACC-TTTCA---A--------------------TG--TCA----A----CAAG-------GTT---TT--GT--ATCTGG-GAA-TATACAAT----------CGCTAC---ATCT-GCTTA--AA--GTGG-ATAC-TC---CTATTGT---TTT
gi|4 : taaatgcataataataaatataaggaacaatgttttgggtttcattttatattgatttgaaatataattttttttttttttttT-GCATAATAATCAT---AT-C-TC---C-ATTGT---ATTACCCATGCATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGAGATGAAAAAAAACCCCAGTATT--TTC-TCTTTG-TCAG--AAAA-TTAAT-TTATATATG--GTGA-CTTTTG--TTTACAA--TTTTCTCTACAT-TTGAAA--TTGCGGAAAAAAT--AGGTGTAT--------TG-ATTG--GGAAAAAAATA--CCTAATTTTTT-GGGAGG-GGAAACCACCCAATT--------A-TCTGT-GC---ATTTTGG--CCtc
gi|5 : agtgcactagaatgataaaaaaAA-----------AAAT-ACCAG-C-ATTTGG-ACTC---TTACC-------------G----GCCTA--ATT-TTTATCAGGTTTACAGAAC-ATCTCT-CCTG-TTGTAGGGGCTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCA-T-T--------------------GGTTTTG----AACTTTAAA---------T---TT--GT--ATCTGG-AAACTATATAAT----A-----TGCTTC-ACA-CT-GC-CACCGC--ATGG--TGC-TC---C-ATTggaaaaaaaat
gi|6 : TTTACAGAA-----------TGTTGGTT-CTCCCTTT-----TT-TGA-TT-----AGTGAAACCT-TGTAATGTT--GAA--CTT-TTTCTGT---TATTAACCT-GACC-CTTTA-A-TAATGGCGGTCAAACTAAAAATG--TCA----G----CAAG-------GCTGGCTT--GT--ATCTGG-GAACTATATAAT----ATACTTTGTTAT-ATATCT-ACT---TAA--ATGG-ATACTTC---C-ATTGT---TTTctcaactttttcactt
gi|7 : -CATT-CAT---------CACATAATCTTTTGC----A---CGT-GCAGGGATTTGGAA-AATAAAAC-TGGA-ATG-AAAAAA----C-GTATT--TTC-TCTTTG-TCAGC-AAAA-TCAAT-TTATATACG--ATGA-TTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GG-AAAAAT--A---GTAT-
gi|8 : acaACAGAAC-ATCTTT-CCTGTTTGTA-GCTTTTTT-----TC-TGA-CT---TTAGTGAAACCT-TAAAGTATT--GAA--CA--TTCCTGT---TATTAGCCT-AACC-CTTCA-TGT--------------------CA--ACA----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATGTGAT----A-----CGCTAC-AAATCT-at
gi|9 : AACAAA---TAAGAGACTATTATTTATTTT--CTT-AGAATTAC---TTA-TC---TTT--TTT------AA-----------AAAT-GCCAG-C-ACTTAG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAAATATAAGGAACAACAAAATTTAATGTTTTGTTGAGTTCATTTTCATATCTGATTAGAAATCATGAAATAGTTTATAAACTCTTTT
Unaligned ( gi|16 ): GCTTGGATTTAGTCCACACAGTGGTTAAACATTCTAACATCCCAACTATACT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 111 111 111 11 2222222222222222 111 111 11 11111 111 111 11 000000000000000000000000000000000000000000000000000000000 33333333333 111111111 11111 111 2222 1 333333333 222222222 1 2222 1 11 11 44444444444444444 1 11 11 11 2 1 1 22222222 111 11
lowQualScore : 4444 111 88 444 6 111 00 8888888888888888 5 5 5 000 0 4 5 111 99 6 8 00 0 5 888 44444 5 55 000 5 66 77 77 5 111 5 00 6 000000000000000000000000000000000000000000000000000000000 99 99 6 00000000000 999 5 555555555 6 1 6 33333 444 6 1111 0 222222222 1 6 777777777 8 1 8 5 8 8 0 3 5555 77 99 7 6 99 6 4 6 99 0 3 11 8 11 1 8 99 6 1 0 66666666666666666 0 33 33 33 0 3 0 0 5 99999999 8 5 444 0 11
lowQualScore : .... ... .. ... . ... .. ................ . . . ... . . . ... .. . . .. . . ... ..... . .. ... . .. .. .. . ... . .. . ......................................................... .. .. . ........... ... . ......... . . . ..... ... . .... . ......... . . ......... . . . . . . . . .... .. .. . . .. . . . .. . . .. . .. . . .. . . . ................. . .. .. .. . . . . . ........ . . ... . ..
lowQualScore : 8888 888 88 000 7 777 33 6666666666666666 7 7 7 000 7 0 7 777 22 7 0 00 4 7 666 33333 7 99 000 7 77 99 99 7 777 2 33 7 555555555555555555555555555555555555555555555555555555555 22 22 7 77777777777 222 7 000000000 7 7 7 77777 000 7 7777 0 000000000 4 0 000000000 0 4 0 6 0 0 8 6 0000 55 22 3 7 88 7 2 7 22 6 8 00 0 00 4 0 22 7 7 8 00000000000000000 0 88 88 88 0 2 0 0 0 00000000 0 0 000 8 00
consensus : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCA-T-T--------------------TG--TCG----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
Reference ( family-2576 ) : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCA-T-T--------------------TG--TCG----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|1 : AACAAAAATTAGATGACTATTATTTATTTT--CTTTAGAATTAT---TCA-TT---TCTAATTTTGATAAAA-----------CTCT-GCCAGGCGATTTGGTACCTGCTTTACCTAAAG-TCGTAACGAGTTGCCTATCATT-TT-AT-AGGTTTACAGAAC-ATCCTC-CCTGTTTGTA-GTTTTTTTGTGTGTG-TGAGTTATATTAGTGAACCATGTACAGTATTTGGAAACTATATTCGTGCTTATATTACCATAGACCACTTCC-T-T--------------------TG--TCGGGAAA----CAAACATAAGTGTT---TTTGGTTCATCTGGAAAACTATATAAT----A-----TGCTACGAAATCTAGCTTAAT-T--ATGG-ACAT-TCTTGT-GTTGTTTCTTTA-C-AT-CATTCCATCAAAATCCGCACAAATCTTTTTGA----ACCTTGT-GCAGTGGTATGGTGAAATCCAACTTGGA-ATGAAAAAAAT---CGATACTTATTCTT-TTTGTTCAGCAAAAA-ATAAT-GTATTAACGGAGTGTTTTTCTGCTTTT-TGAATTTTTCTCTTAATGTTAAAATTTTG-GAGAATAATAAA--TGTAA-TCTAAAATGAATTGCCGG--AAAAATAGCCTCAAGTTTTT-GGAGGGCACAAACGAGCCGAAT--------ACTCGGTGGTTGCATATTGATCCTCCCAGAAA
gi|10 : gattttatcgggtgatttttaactaaccaccttacacctctatctcctattgaattgggtgaaaacattagcgaggacatttttctcaaattgggaaaaatcattttagtaaattaagttgataaataaatgcataaaataatgagaattatataggaacaacaaatgttttgtttgagatccattttatatctgattagaatcatgaaataaatcttttttctAACAAA---TAGATAACTATTATTTATGTT--CAT-AGAATTAC---TTATTT---TCTAATGTC-ATTTAC-----------AAA--GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGatatgcaactgattgtgtcacagcagttttaccatctaaattatatt
gi|11 : ttttaGGA-A--GAAAAAA----CA-TATT--TTCT-CTTTG-TCAGCAAA---TCAAT-TTATATATG--GTGATTTT-TG--TTT-TGA--TTTCCTCTTCAT-TTGAAA--TTG-GGAAAAAca
gi|12 : TGAAA--TTG-GGAAGAA-------TGTAAAT-----ATG-ATGG--GA--AAAAATA--GCCAG-TT----GGAAAG-GGAATACAGCCGAAT--------A-TC-GCGGT---A-TTTGA--CCCCCAAAAAtagtaa
gi|14 : TA--ATA-AG-GTCAAATTCACAGAAC-ATCTCT-CCTGTTTGTG----TTTTT-----TC-TGA-TT---TTAAGGAAACCC-T--GGTTTT--G-A--CAT-aatcac
gi|15 : t-TT---TCTAATGTC-ATAAAA-----------AAATTGCCAG-T-ATTTGG-ACTC---TTAACTAAAG-TTGT---AAATTGCCTA--ATA-T
gi|17 : tAT---------CAGAAAACCTTTTGCTTACA---TGT-GCAGGGGTTTGGAG-AAT-AAAC-TG
gi|18 : GAAAC-AGCCGAAT--------A-TCGGTGGT---ATTTTGA--CTCCAAAAAA
gi|19 : GTATT--TT-TTCTTTG-TCAG-AAAAA-T--AT-TTATATATG--GTGatcact
gi|2 : acccAACAAA---TAGATGCCTATTATTTATTT---CTT-AGAATACT---TCA-TT---TCTAATTTC-ATAAAAAAAAAAAAAAAAAAT-GCCAG-C-ATTTGG-ACTC---TTACTTAAAG-TTGT---GAATT-CCTA--ATA-TT-ATCAGGTTTACAGAACGATCTCT-CTTGTTAGTA-GCTTTTTT-----TC-TGA-TT---TTAGTGACACCC-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT--ACC-CTTCATT-T--------------------TG--T-G----A----C----------------TT--G---AT-TGG-AAACTTTATAATGTACA-----TGCTAC-AAATCG-GCTTAATAA--ATGGAATAC-TC---T-ATTGT---TTTACC-A---GTT-CAT---------CACATA---TTTTG-----A---TGTGGCAGGGGTATGGAG-AATAAAAC-TGGA-ATG-AAAAAA----CAATATT--TTCTTCTTTG-TCAGCAAAAATTTAATGTTACATACG--GTGATTCCTTG--GTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A---GTATCT-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTTGGGAGGG-AGAAACCAGCCGAATAAAAAAAAA-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|3 : AACAAA----GGATGACTATTATTTATTTTTTCTT--GAATTATCTTTTA-TTCTATTTATTTTT-TTAAAA-----------T--T-GCCAG-C-ATTTGG-ACTC---TTA-ACAAAGTTTGT---GAATTG-CTA--ATATTT-ATCAGGTCTACAGAA--ATGTTTCCCTGTTTTGA-GTTTTTTT-----TCTTGA--C---TTAGTGAAA-CT-TA-AGTA-T--GAA--CAT-TTCCTGT---TATTA-CCT-AACC-TTTCA---A--------------------TG--TCA----A----CAAG-------GTT---TT--GT--ATCTGG-GAA-TATACAAT----------CGCTAC---ATCT-GCTTA--AA--GTGG-ATAC-TC---CTATTGT---TTT
gi|4 : taaatgcataataataaatataaggaacaatgttttgggtttcattttatattgatttgaaatataattttttttttttttttT-GCATAATAATCAT---AT-C-TC---C-ATTGT---ATTACCCATGCATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGAGATGAAAAAAAACCCCAGTATT--TTC-TCTTTG-TCAG--AAAA-TTAAT-TTATATATG--GTGA-CTTTTG--TTTACAA--TTTTCTCTACAT-TTGAAA--TTGCGGAAAAAAT--AGGTGTAT--------TG-ATTG--GGAAAAAAATA--CCTAATTTTTT-GGGAGG-GGAAACCACCCAATT--------A-TCTGT-GC---ATTTTGG--CCtc
gi|5 : agtgcactagaatgataaaaaaAA-----------AAAT-ACCAG-C-ATTTGG-ACTC---TTACC-------------G----GCCTA--ATT-TTTATCAGGTTTACAGAAC-ATCTCT-CCTG-TTGTAGGGGCTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCA-T-T--------------------GGTTTTG----AACTTTAAA---------T---TT--GT--ATCTGG-AAACTATATAAT----A-----TGCTTC-ACA-CT-GC-CACCGC--ATGG--TGC-TC---C-ATTggaaaaaaaat
gi|6 : TTTACAGAA-----------TGTTGGTT-CTCCCTTT-----TT-TGA-TT-----AGTGAAACCT-TGTAATGTT--GAA--CTT-TTTCTGT---TATTAACCT-GACC-CTTTA-A-TAATGGCGGTCAAACTAAAAATG--TCA----G----CAAG-------GCTGGCTT--GT--ATCTGG-GAACTATATAAT----ATACTTTGTTAT-ATATCT-ACT---TAA--ATGG-ATACTTC---C-ATTGT---TTTctcaactttttcactt
gi|7 : -CATT-CAT---------CACATAATCTTTTGC----A---CGT-GCAGGGATTTGGAA-AATAAAAC-TGGA-ATG-AAAAAA----C-GTATT--TTC-TCTTTG-TCAGC-AAAA-TCAAT-TTATATACG--ATGA-TTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GG-AAAAAT--A---GTAT-
gi|8 : acaACAGAAC-ATCTTT-CCTGTTTGTA-GCTTTTTT-----TC-TGA-CT---TTAGTGAAACCT-TAAAGTATT--GAA--CA--TTCCTGT---TATTAGCCT-AACC-CTTCA-TGT--------------------CA--ACA----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATGTGAT----A-----CGCTAC-AAATCT-at
gi|9 : AACAAA---TAAGAGACTATTATTTATTTT--CTT-AGAATTAC---TTA-TC---TTT--TTT------AA-----------AAAT-GCCAG-C-ACTTAG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTa
blockSeqs : T TTT A CTT T CTA C AAAAAAAAAAAAAAT . . . . C T . . T T CG C GGG . T T . . AC . . . . G A . ATAATGGCGGTCAAACTAAAAATGTCAGCAAGGCTGGC . . . ATACTTT AA . ATAATAATC A A T CT . C CATG . . A A CTTACA G T . A . G G ACCC AA . T . CA T C G . T T . A . T . . C A AGGTGTAT . . AA . T T G . C AAAAAAAA . G . .
blockSeqs : T T A . . . C AAATT . . . . T . . . . . C . GC . . T . . AC . . . . G G . TTGGTTTTGAACTTTAAAT . . . GTACAT AC . TTAATAA . A . T . C A . . T A CA . A . A . . A . AG . T . CA . T . . T T . . . A . . . A TGTAAAT . . . . . T . . C . . G . .
blockSeqs : T T A . . . C AAAT . . . . T . . . . . C . GT . . T . . GT . . . . A G . TGTCAACAACAAGGTT . . . AT AT . CACCGC . G . C . . . A A CA . T . A . . . . A . T . A . T . . . T . . . A . . . A AGTATCT . . . . . . . . C . . T . .
blockSeqs : . . . . . . T AAAT . . . . C . . . . . C . CT . . T . . AA . . . . G A . ATGTCAACAAGGTT . . . AC AA . TTAAA . A . C . . T . A . T . . . . . . G . . . C . C . . . . . . . A . . . A . . . . . .
blockSeqs : . . . AAA . . . . C . . . . . . GC . . C . . A . . . . . . . TTTTGTGAC . . . C . . TTAA . . . C . . . . . . . . . . .
blockSeqs : TT . . . . . . . . . . . . . . . . . . .
blockSeqCons : T*** A* C* *** *** ** ***** T* *** ** ** *** G* ** ** AN* C**** *** ********* CA******* **** AG ** ** ** ** ** *** **
originalCons : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCA-T-T--------------------TG--TCG----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
finalCons : AACAAAT---AGATGACTATTATTTATTTT--CTTA-GAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGAT-T---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCTG-ACC-CTTCA-T-T--------------------TG--TCG----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATATAAT----A-----CGCTACAN-ATCT-GCTTAATAA--ATGG-ATAC-TCC----ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGCA-------TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAAATATAAGGAACAACAAAATTTAATGTTTTGTTGAGTTCATTTTCATATCTGATTAGAAATCATGAAATAGTTTATAAACTCTTTT
Unaligned ( gi|16 ): GCTTGGATTTAGTCCACACAGTGGTTAAACATTCTAACATCCCAACTATACT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 111 111 111 11 2222222222222222 111 111 11 11111 111 111 11 000000000000000000000000000000000000000000000000000000000 33333333333 111111111 11111 111 2222 1 333333333 222222222 1 2222 1 11 11 44444444444444444 1 11 11 11 2 1 1 22222222 111 11
lowQualScore : 4444 111 88 444 6 111 00 8888888888888888 5 5 5 000 0 4 5 111 99 6 8 00 0 5 888 44444 5 55 000 5 66 77 77 5 111 5 00 6 000000000000000000000000000000000000000000000000000000000 99 99 6 00000000000 999 5 555555555 6 1 6 33333 444 6 1111 0 222222222 1 6 777777777 8 1 8 5 8 8 0 3 5555 77 99 7 6 99 6 4 6 99 0 3 11 8 11 1 8 99 6 1 0 66666666666666666 0 33 33 33 0 3 0 0 5 99999999 8 5 444 0 11
lowQualScore : .... ... .. ... . ... .. ................ . . . ... . . . ... .. . . .. . . ... ..... . .. ... . .. .. .. . ... . .. . ......................................................... .. .. . ........... ... . ......... . . . ..... ... . .... . ......... . . ......... . . . . . . . . .... .. .. . . .. . . . .. . . .. . .. . . .. . . . ................. . .. .. .. . . . . . ........ . . ... . ..
lowQualScore : 8888 888 88 000 7 777 33 6666666666666666 7 7 7 000 7 0 7 777 22 7 0 00 4 7 666 33333 7 99 000 7 77 99 99 7 777 2 33 7 555555555555555555555555555555555555555555555555555555555 22 22 7 77777777777 222 7 000000000 7 7 7 77777 000 7 7777 0 000000000 4 0 000000000 0 4 0 6 0 0 8 6 0000 55 22 3 7 88 7 2 7 22 6 8 00 0 00 4 0 22 7 7 8 00000000000000000 0 88 88 88 0 2 0 0 0 00000000 0 0 000 8 00
consensus : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCA-T-T--------------------TG--TCG----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATATAAT----A-----CGCTAC-AAATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
Reference ( family-2576 ) : AACAAA---TAGATGACTATTATTTATTTT--CTT-AGAATTAT---TTA-TT---TCTAATTTC-ATAAAA-----------AAAT-GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTA--ATA-TT-ATCAGGTTTACAGAAC-ATCTCT-CCTGTTTGTA-GTTTTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCA-T-T--------------------TG--TCG----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATATAAT----A-----CGCTAC-ANATCT-GCTTAATAA--ATGG-ATAC-TC---C-ATTGT---TTTACC-AT-CATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGA-ATGAAAAAAA----CAGTATT--TTCTTCTTTG-TCAGCAAAAA-TTAAT-TTATATACG--GTGATTTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A--TGTAT-T-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTT-GGAGGG-GGAAACCAGCCGAAT--------A-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|1 : AACAAAAATTAGATGACTATTATTTATTTT--CTTTAGAATTAT---TCA-TT---TCTAATTTTGATAAAA-----------CTCT-GCCAGGCGATTTGGTACCTGCTTTACCTAAAG-TCGTAACGAGTTGCCTATCATT-TT-AT-AGGTTTACAGAAC-ATCCTC-CCTGTTTGTA-GTTTTTTTGTGTGTG-TGAGTTATATTAGTGAACCATGTACAGTATTTGGAAACTATATTCGTGCTTATATTACCATAGACCACTTCC-T-T--------------------TG--TCGGGAAA----CAAACATAAGTGTT---TTTGGTTCATCTGGAAAACTATATAAT----A-----TGCTACGAAATCTAGCTTAAT-T--ATGG-ACAT-TCTTGT-GTTGTTTCTTTA-C-AT-CATTCCATCAAAATCCGCACAAATCTTTTTGA----ACCTTGT-GCAGTGGTATGGTGAAATCCAACTTGGA-ATGAAAAAAAT---CGATACTTATTCTT-TTTGTTCAGCAAAAA-ATAAT-GTATTAACGGAGTGTTTTTCTGCTTTT-TGAATTTTTCTCTTAATGTTAAAATTTTG-GAGAATAATAAA--TGTAA-TCTAAAATGAATTGCCGG--AAAAATAGCCTCAAGTTTTT-GGAGGGCACAAACGAGCCGAAT--------ACTCGGTGGTTGCATATTGATCCTCCCAGAAA
gi|10 : gattttatcgggtgatttttaactaaccaccttacacctctatctcctattgaattgggtgaaaacattagcgaggacatttttctcaaattgggaaaaatcattttagtaaattaagttgataaataaatgcataaaataatgagaattatataggaacaacaaatgttttgtttgagatccattttatatctgattagaatcatgaaataaatcttttttctAACAAA---TAGATAACTATTATTTATGTT--CAT-AGAATTAC---TTATTT---TCTAATGTC-ATTTAC-----------AAA--GCCAG-C-ATTTGG-ACTC---TTACCCAAAG-TTGatatgcaactgattgtgtcacagcagttttaccatctaaattatatt
gi|11 : ttttaGGA-A--GAAAAAA----CA-TATT--TTCT-CTTTG-TCAGCAAA---TCAAT-TTATATATG--GTGATTTT-TG--TTT-TGA--TTTCCTCTTCAT-TTGAAA--TTG-GGAAAAAca
gi|12 : TGAAA--TTG-GGAAGAA-------TGTAAAT-----ATG-ATGG--GA--AAAAATA--GCCAG-TT----GGAAAG-GGAATACAGCCGAAT--------A-TC-GCGGT---A-TTTGA--CCCCCAAAAAtagtaa
gi|14 : TA--ATA-AG-GTCAAATTCACAGAAC-ATCTCT-CCTGTTTGTG----TTTTT-----TC-TGA-TT---TTAAGGAAACCC-T--GGTTTT--G-A--CAT-aatcac
gi|15 : t-TT---TCTAATGTC-ATAAAA-----------AAATTGCCAG-T-ATTTGG-ACTC---TTAACTAAAG-TTGT---AAATTGCCTA--ATA-T
gi|17 : tAT---------CAGAAAACCTTTTGCTTACA---TGT-GCAGGGGTTTGGAG-AAT-AAAC-TG
gi|18 : GAAAC-AGCCGAAT--------A-TCGGTGGT---ATTTTGA--CTCCAAAAAA
gi|19 : GTATT--TT-TTCTTTG-TCAG-AAAAA-T--AT-TTATATATG--GTGatcact
gi|2 : acccAACAAA---TAGATGCCTATTATTTATTT---CTT-AGAATACT---TCA-TT---TCTAATTTC-ATAAAAAAAAAAAAAAAAAAT-GCCAG-C-ATTTGG-ACTC---TTACTTAAAG-TTGT---GAATT-CCTA--ATA-TT-ATCAGGTTTACAGAACGATCTCT-CTTGTTAGTA-GCTTTTTT-----TC-TGA-TT---TTAGTGACACCC-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT--ACC-CTTCATT-T--------------------TG--T-G----A----C----------------TT--G---AT-TGG-AAACTTTATAATGTACA-----TGCTAC-AAATCG-GCTTAATAA--ATGGAATAC-TC---T-ATTGT---TTTACC-A---GTT-CAT---------CACATA---TTTTG-----A---TGTGGCAGGGGTATGGAG-AATAAAAC-TGGA-ATG-AAAAAA----CAATATT--TTCTTCTTTG-TCAGCAAAAATTTAATGTTACATACG--GTGATTCCTTG--GTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GGAAAAAAT--A---GTATCT-----ATG-ATTG--GG--AAAAATA--CCCAA-TTTTTGGGAGGG-AGAAACCAGCCGAATAAAAAAAAA-TCGGTGGT---ATTTTGA--CCCCCAAAAA
gi|3 : AACAAA----GGATGACTATTATTTATTTTTTCTT--GAATTATCTTTTA-TTCTATTTATTTTT-TTAAAA-----------T--T-GCCAG-C-ATTTGG-ACTC---TTA-ACAAAGTTTGT---GAATTG-CTA--ATATTT-ATCAGGTCTACAGAA--ATGTTTCCCTGTTTTGA-GTTTTTTT-----TCTTGA--C---TTAGTGAAA-CT-TA-AGTA-T--GAA--CAT-TTCCTGT---TATTA-CCT-AACC-TTTCA---A--------------------TG--TCA----A----CAAG-------GTT---TT--GT--ATCTGG-GAA-TATACAAT----------CGCTAC---ATCT-GCTTA--AA--GTGG-ATAC-TC---CTATTGT---TTT
gi|4 : taaatgcataataataaatataaggaacaatgttttgggtttcattttatattgatttgaaatataattttttttttttttttT-GCATAATAATCAT---AT-C-TC---C-ATTGT---ATTACCCATGCATT-CAT---------CACAAAACCTTTTGC----A---TGT-GCAGGGGTTTGGAG-AATAAAAC-TGGAGATGAAAAAAAACCCCAGTATT--TTC-TCTTTG-TCAG--AAAA-TTAAT-TTATATATG--GTGA-CTTTTG--TTTACAA--TTTTCTCTACAT-TTGAAA--TTGCGGAAAAAAT--AGGTGTAT--------TG-ATTG--GGAAAAAAATA--CCTAATTTTTT-GGGAGG-GGAAACCACCCAATT--------A-TCTGT-GC---ATTTTGG--CCtc
gi|5 : agtgcactagaatgataaaaaaAA-----------AAAT-ACCAG-C-ATTTGG-ACTC---TTACC-------------G----GCCTA--ATT-TTTATCAGGTTTACAGAAC-ATCTCT-CCTG-TTGTAGGGGCTTTT-----TC-TGA-TT---TTAGTGAAACCT-TACAGTATT--GAA--CAT-TTCCTGT---TATTAGCCT-GACC-CTTCA-T-T--------------------GGTTTTG----AACTTTAAA---------T---TT--GT--ATCTGG-AAACTATATAAT----A-----TGCTTC-ACA-CT-GC-CACCGC--ATGG--TGC-TC---C-ATTggaaaaaaaat
gi|6 : TTTACAGAA-----------TGTTGGTT-CTCCCTTT-----TT-TGA-TT-----AGTGAAACCT-TGTAATGTT--GAA--CTT-TTTCTGT---TATTAACCT-GACC-CTTTA-A-TAATGGCGGTCAAACTAAAAATG--TCA----G----CAAG-------GCTGGCTT--GT--ATCTGG-GAACTATATAAT----ATACTTTGTTAT-ATATCT-ACT---TAA--ATGG-ATACTTC---C-ATTGT---TTTctcaactttttcactt
gi|7 : -CATT-CAT---------CACATAATCTTTTGC----A---CGT-GCAGGGATTTGGAA-AATAAAAC-TGGA-ATG-AAAAAA----C-GTATT--TTC-TCTTTG-TCAGC-AAAA-TCAAT-TTATATACG--ATGA-TTTTTG--TTT-TGA--TTTCCTCTACAT-TTGAAA--TTG-GG-AAAAAT--A---GTAT-
gi|8 : acaACAGAAC-ATCTTT-CCTGTTTGTA-GCTTTTTT-----TC-TGA-CT---TTAGTGAAACCT-TAAAGTATT--GAA--CA--TTCCTGT---TATTAGCCT-AACC-CTTCA-TGT--------------------CA--ACA----A----CAAG-------GTT---TT--GT--ATCTGG-GAACTATGTGAT----A-----CGCTAC-AAATCT-at
gi|9 : AACAAA---TAAGAGACTATTATTTATTTT--CTT-AGAATTAC---TTA-TC---TTT--TTT------AA-----------AAAT-GCCAG-C-ACTTAG-ACTC---TTACCCAAAG-TTGT---GAATTGCCTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAAAATATAAGGAACAACAAAATTTAATGTTTTGTTGAGTTCATTTTCATATCTGATTAGAAATCATGAAATAGTTTATAAACTCTTTT
Unaligned ( gi|16 ): GCTTGGATTTAGTCCACACAGTGGTTAAACATTCTAACATCCCAACTATACT