lowQualScore : 22 22 1 1 222 22 2 11 22222222222 2 1 22222222 44444 1111 2222222 333333 22 111 333333333333333 111 11 1 22 3 11 2222 111111 111 22 333 22 2222222 11111 11 11111
lowQualScore : 2 2 33 00 7 1 3 3 555 555 6 00 6 5 8 66 0 0 0 0 0 77777777777 0 8 8 0 66666666 6 3 6 99 33333 4444 6 0000000 6 6 6 3 6 000000 5 44 5 000 5 000000000000000 1 5 77 5 5 777 5 66 5 5 5 4 2 8 11 5 77 4 66 5 5 2222 444444 777 5 66 55 44 111 4 4 22 1 2222222 11111 66 11111 4 8
lowQualScore : . . .. .. . . . . ... ... . .. . . . .. . . . . . ........... . . . . ........ . . . .. ..... .... . ....... . . . . . ...... . .. . ... . ............... . . .. . . ... . .. . . . . . . .. . .. . .. . . .... ...... ... . .. .. .. ... . . .. . ....... ..... .. ..... . .
lowQualScore : 5 5 00 77 7 0 3 3 777 333 7 00 4 0 0 22 8 8 8 8 8 22222222222 0 0 0 0 44444444 7 5 7 22 33333 2222 7 2222222 7 7 7 3 7 222222 7 77 7 000 7 333333333333333 7 7 99 7 7 999 0 88 0 0 0 8 5 0 55 0 00 4 99 0 0 9999 444444 666 0 66 00 44 111 6 4 77 0 6666666 11111 77 11111 4 8
consensus : NNNNNNNNNNNCCNCCCNCCCCCCGGGG--GGGGTA-TCTGACGTNGAGTTAAGTA-TGGTG-ATT--ATANAGGCTGGCATC-TTTTAATGATATGTTTTTGGACA-ATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCAGCG-TTACA--TCAATTTTTG-ACCAGC-ATT--CC--CCCTAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGAAAACAAG-AAAA-TAGA-CATTTATTTCTTC-ATATTACTAAT-CAGAACA---A-T-------TTTTTTT-CCCCAAGTAAGATGCTTT-TATGCGACTTTTT--CCGAG-TTTAA-C---GTCAG-CGCACGNCACTAAACA-CGA-GTGT-TTGACTAATAAAGTGC-AAAG-CAATT-CCTATTTCGATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCATTT-CCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGGCTTATA-TTTTTGTAATCAACAATAA-TTTCTCTCACATCG-TGTGT-TTCTGTCGGCTTTTGAATCTT--T--AGCCGTGCGTT-----ACCGGATCTTT-TC-----AC-CATGGTCACGATGGACC
Reference ( gi|2 ) : CCGGGCCTGCCCCCCCCCCCCCCTGGGGTTGGGGTA-TCTGACGTTGAGTTAAATA-TGGTG-ATT--ATACGAGCTGGCATC-TTTTAATGATATGTTTTTGGACACATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCCGCG-TTA-A--TCAATTTTTG-ACTAGC-ATT--CC--G--TAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGGAAACAAG-AAAA-TGAG-CATTTATTTCTTC-ATAAGACTAAT-CAGAACA---A-T-------TTTTTTCGCCCCAAGTAAGATGCTTT-TATGTGACTTTTT--CCAAG-TTTAA-C---GTCAA-CGCACGTAACTAAACA-CGA-GTGT-TTGACTAATAAAGTGC-AAA--CAATTGCCTATTCAAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCA-T--CCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGCCTTATA-ATTTTGTAATCAACAATAAGTCTCTCTCACATCG-TGTGT-TTCTGTCGGCTTTTGAATC-T--T--AGCCGTGCGTT-----ACCGAATCTTG-TC-----AC-CATGGTCACCATGGACC
gi|3 : CCCCCCCCCCCTCGGGGTTGGGGTA-TCTGACGTTGAGTTAAATA-TGGTG-ATT--ATACGAGCTGGCATC-TTTTAATGATATGTTTTTGGACACATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCCGCG-TTA-A--TCAATTTTTG-ACTAGCCATT--CC--G--TAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGGAAACAAG-AAAA-TGA--CATTTATTTCTTC-ATAAGACTAAT-CAGAACA---A-T-------TTT-TTCGCCCGAAGTAAGATGCTTT-TATGTGACTTTTT--CCAAG-TTTAA-C---GTCAA-CGCACGTAACTAAACA-CGA-GTGT-TTGACTAATAAAGTGC-AAA--CAATTGCCTATTCAAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCA-T--CCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGCCTTATA-ATTTTGTAATCAACAATAAGTCTCTCTCACATCG-TGTGT-TTCTGTCGGCTTTTGAATC-T--T--AGCCGTGCGTT-----ACCGAATCTTGTTC-----AC-CATGGTCACCATGGACC
gi|4 : CCACCCATCCCCTAGGGAGGGGGT---CTGACGTAGAGTGTAGTAGTGATGGATT---TATAGGCTAG-AT---TTTAAT-ATATGTTTTTGGGCG-ATTT-AGAAAGTAAA--TATTCAATTCA-GAATC-GTTTACCA-ACGT---A-C-A---CTAC-TCGAAA-TCATTTCAC-CCAGCT-CT-----TCAATTTTTG-ATCAGC-ATT--CC--CCCTAGTC----TGTATTTATA--T--T-CAATTTC-TACGCATGAAAACAAG-AAAAATAGA-CATTTATTTCCTCGATATTACTAATTCAGAACA---AAT-------TTTTTTT--TTCAA---AAATG-TTT-TATGCGACTTTATGCCTGTG-TTTAA-A---GTCAG-CGCAAGCA-CTAATCAGCGG-AGGT-TTGACATATAAAGCA--AAA--CAATC-CCTATTTCAATGTAATA-TAAGG--ACTTGAAGGATAATGCG-TTCA-TT-CCGTGGGG------TAGGT--ATTTTTT--AATTTA-GGC-TTAAA-TTTTTGTAATCAACAA-AATTCTC-ATCACA-CG-TG-GTGTTCTG-CGGCTTT-GAATC-T--TTTAGC-GTGCGTT-----ACCGGATCTTT-TC-----AC-CAT-GTCACGATGGACC
gi|1 : cctggtccttaGGGG--GGGGTAATCTGACGTGGAGTTAAGTA-TGGGG-ATTTTATAAAGGCTGGCATCCTTTTAATATTGTTTTTTTGGACA-ATTTCAGAAAGTAAAA-TATTCAATTCATGAATCTG-TTACCATA-GT---T-T-AAATTTA-CTCGAAATTCCGTTCACACCAGCGTTTACA--TCAATTTTTGAACCACC-ATTCCCC--C--TAGTCCGTACGTATTT-CATTT--T-TAATTTC-TA-G-ATGAAAACAAGAAAAA-TAGA-CA-TTATTT-TTC-ATATTACTATT-CAGAACA---A-TCCCCCCCCCCCCCCCCCCCGAGTAAGATGCTTTATGTGTGACTTTTT--CAAAGTTTTAA-CGGTGTCAA-CGCACGTTACTAAA-A-CGATGTGTATTGACTAATAA--TGC-AAAACCAATT-CCTATTTCAATGTGATATTACAATCCCT-GAAGGATAATGCCTTTCA-TTCCCGTGGGA------TAGG--TATTTTTTT-AATTTACGGCA-TATA-TTTTTGTAATCAACAATA---TTCTCTCACATCGTTGTG--TTCTGTC-GCTTTTGAATC-T--TTAAGCCGTGCGTTATCAAACCGAATCTTT-TC-----ACACATGGTCACGATGGacgtgtg
gi|5 : TTTAATGATATGTTTTTGGGCAATTTT-AGAAAATAAAA-TATTCAATTCATAAATGTCTTTACCATACGT---T-AGAA--CTAC-TCGAAA-TTCTTTCGC-CCAGCG-T-A-ACTTCAATTTTTG-ACCAGC-ATT--CC--CCTTAGTC----CGTATTT-TA--T--TTCAATTCC-TT-G-ATGAAAACAAG-AAAA-ACAGACATTTATTTCTTC-ATATTACTAAT-CAGAACA---A-T-------TTCTTTT-CCACAAGTAAGATGCTTT-TATGCGACTTTTT--CCAAG-TTTAA-C---GTCAA-CGCACGGTACTAAATA-CGA-GTAT-TTGACTAATAAA-TGCAAAA--CAATT-CCTATTTCAATGTGATA-TACAG--ACT-GAAGGGTAATGCC-ATCATT--CCGTGGGATACATGTAGG--TATTTATTTTAATTTACGGGCTTATATTTTTTGTAATCAACAATAA--TTCTCTCGCATCG-TGTG--TTATGTCGGCTTTTGAATCTT--T--AGTCGTGCGTT-----ACCGGATATTT-TC-----AC-CATGGTCACGATGGTCCccacgg
gi|6 : TAATATGTTTTTGGACA-ATTT-AGAAAGTAAAAAT--TCAATTCATGAATCTGTTTACCATACGTAATTAC-AA--CTAC-TCGAAA-TCCTTTCAC-CCAGCG-TTACA--TCAATTTTTG-ACCAGC-ATT--CC--CCCTAGTC----TGTATTT-TA--T--TTCAATTCC-TA-G-ATGAAAACAAG-AAAAATAGA-CATTTATTTCTTC-ATATTACTAAT-CAGATCA---A-T-------TTTTT---CCCCAAGGAAGATGCTTA-TATGTGACTTTTT--CCAAG-TTTAA-C---GTCAA-CGCACGGTACTGAACA-CGA-GTGT-TTGACTAATAAA-TGC-AAA--CAATT--CTATTTCAATGTGATA-TACAG--GCT-GGAGGATAATGCC-TTCATT--CCGTGGGA------TAGG--TA-TTTTTTAAATTT-CGGGCTTATATTTTTTGTAATCAACAATAATTC---CTCATATCG-TGT-T-CTCTGTCGGCTTTTGAATCTT--T--AGCCGTACGTT-----ACCGAATCTTT-TCACCATAC-CATGGTCACGATGGACC
gi|7 : tcTTG-ATCAGT-ATT--CCCCG--TAGTC----CTT-TTT-TA--GAAC-CAATTTTATA-G-ATGAAAACATA-TCAA-TAGA-CATTTATTTCTTA-TTATCACTGAT-TGAAATATAAA-T-------TGATT------CAGGTATATTGCTTC-AATGTGACTTTTT--CGAA---CTAAGCAG-GTCAGGCGCACAACACTAAACA-CTA-GTGT-TTGACT-GTATAGTGC-AAAG-TAATT-TCTATTTCGATGCAATG-TACacgg
gi|12 : tactcgtaatctcatcatcaaagC-ATATTACTAAT-CAGAACA---A-T-------TTTTTTTTTTTCAAATAAGATGCTTT-TATACGACTTTTC--CCGTG-TTTAA-C---GTCAG-TGCACAGCACTAATCA-CGA-GTGT-TTGAAT-ATAAA-TGCAAAA--CAATC-CCTATTTCAATG
gi|10 : TCAG-AGTACACCATTAAACG-CGA-GTGT-TTGAC-AA-AAAGTGC-AAAG-CAATT-TCTATTTCGATTTGATG-CAC----------------ATGCC-TTCATT--CTGTGGGT------TAGGT-T
gi|8 : aatgcaacttctaaaagaTGACTAATAAA-TGC-AAAA-CAATT-CCTATTTCAATGTAATA-TACAG--ACT-GAAGGATAA-------CA-TT-CCGTGGAA------TAGGT--ATTTTTTTAAATT-ACGGGCTTATA-TTTTTGTAATCAACAATAA--TTCTCTCACATCG-TGTG--TTCTGTCGGCTTTTGAATCTT--T--AGCCGTGCGTT-----ACCGAATCTGT-TC-----AC-CATGGTCACGGTGGACCtgtgtaaagcttactcaatttgctcatctcgtgtgtcctgccctcatttgaat
gi|9 : cAAGTGC-AAAG-CAGTT-TTTATCTCGATGCGACA-CACAG--ACC-AAGGAATAATGCC-TTCA-T--TCTCTGGA--------GGTGTA-------AAACTTACAGGCTTATA-CTTTTGTAATCAACGATAA-TTTC-CTCAACCCA-CGTGT-TTC-ATCCTCATTTGAATCTT--T--AGCCATGCGTT-----ACTTGATCTTT-TC-----AC-CAAAGTCATGATGGa
gi|13 : tgattatTTTTGTAATCAACAATAA--TTCTCTCACATCA-TGTG--TTCCGTCGGCTTTTGAATCTT--T--AGCCGTGTGTT-----ACCGGATCTTT-TC-----AC-CATGGTCACttca
gi|14 : TTTTGTAATCAACAATAA--TTCTCTCACACCG-TGTG--TCCAGTCGGTATTTGAATT-TCAT--AGGCGTgaa
gi|16 : atCCGTGCGTT-----ACCGGGTCTTT-TC-----AC-CATGGT--CCACGGcggaagcaaattgaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTTTATCTTTAGTTTATCTGAAAAGAGAAAACAGGTGAATTGTAAATATCAACTGCAAATCAATTATTTTTTATAACCCCCCCCCCCCCCCCCCCGATCAATGTTCGTTATCTTTGCCTTTATATGCGTTTGAAGATGTCAA
Unaligned ( gi|15 ): TTTTAAAGATTAGGCTGGACAATGATTTTGTAAACCCCCCCCCCCCCCCCCCCGATCAA
Alignments
lowQualScore : 22 1 1 1 111 11 1 1 1 1111111 1 1 1111 1111111 1 11111111 111 1 11 111 111111 222 1111 11111 11111
lowQualScore : 1 1 0 77 0 1 0 0 777 1 2 22 3 3 3 1 7777777 99 5 6 6 6 0 5 5 77 2222 5 4444444 5 5 5 5 7 0 5 5 888 88888888 666 55 5 66 5 555 4 66 4 4 4 3 0 44 7 1 4 66 4 4 999 222222 111 1 2 2 88 4444 3 3 3 8 4 2 44 4 4 00000 4 00000 4 4
lowQualScore : . . . .. . . . . ... . . .. . . . . ....... .. . . . . . . . .. .... . ....... . . . . . . . . ... ........ ... .. . .. . ... . .. . . . . . .. . . . .. . . ... ...... ... . . . .. .... . . . . . . .. . . ..... . ..... . .
lowQualScore : 0 0 7 55 0 0 0 0 000 0 5 55 7 3 3 3 2222222 22 0 7 7 7 8 7 7 33 1111 7 7777777 7 7 7 7 1 1 0 0 888 11111111 666 22 0 99 0 666 4 22 4 4 4 4 5 55 3 6 0 11 4 4 888 888888 888 9 0 9 11 1111 6 6 6 8 0 3 88 0 0 00000 0 00000 0 0
consensus : NNNNNNNNNNNCCCCCCCCCCCCCGGGGTTGGGGTA-TCTGACGTNGAGTTAAGTA-TGGTG-ATT--ATACGGGCTGGCATC-TTTTAATGATATGTTTTTGGACA-ATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGAAAACAAG-AAAAATAGACATTTATTTCTTC-ATATTACTAAT-CAGAAC---AAT--------TTTTTTT-CCC-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCGAG-TTTAAC---GTCA-GCGCACGNCACTAAACA-CGA-GTGT-TTGACTAATAAAGTGCAAAA-CAATT-CCTATTTCAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCATTTCCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGGCTTATA-TTTTTGTAATCAACAATAA-TTTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGATGGACC
Reference ( family-2568 ) : NNNNNNNNNNNCCNCCCNCCCCCCGGGG--GGGGTA-TCTGACGTNGAGTTAAGTA-TGGTG-ATT--ATANAGGCTGGCATC-TTTTAATGATATGTTTTTGGACA-ATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGAAAACAAG-AAAA-TAGACATTTATTTCTTC-ATATTACTAAT-CAGAAC---AAT--------TTTTTTT-CCC-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCGAG-TTTAAC---GTCA-GCGCACGNCACTAAACA-CGA-GTGT-TTGACTAATAAAGTGCAAAG-CAATT-CCTATTTCGATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCATTTCCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGGCTTATA-TTTTTGTAATCAACAATAA-TTTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGATGGACC
gi|1 : GGGG--GGGGTAATCTGACGTGGAGTTAAGTA-TGGGG-ATTTTATAAAGGCTGGCATCCTTTTAATATTGTTTTTTTGGACA-ATTTCAGAAAGTAAAA-TATTCAATTCATGAATCTG-TTACCATA-GT---T-T-AAATTTA-CTCGAAATTCCGTTCACACCAGCGTTTACATCAATTTTTGAACCACC-ATTCCCCCTAGTCCGTACGTATTT-CATTT--T-TAATTTC-TA-G-ATGAAAACAAGAAAAA-TAGACA-TTATTT-TTC-ATATTACTATT-CAGAAC---AATCCCCCCCCCCCCCCC-CCC-CGAGTAAGATGCTTTATGTGTGACTTTTT--CAAAGTTTTAACGGTGTCA-ACGCACGTTACTAAA-A-CGATGTGTATTGACTAATAA--TGCAAAACCAATT-CCTATTTCAATGTGATATTACAATCCCT-GAAGGATAATGCCTTTCATTCCCGTGGGA------TAGG--TATTTTTTT-AATTTAC-GGCATATA-TTTTTGTAATCAACAATA---TTCTC-TCACATCGTTG-TG-TTCTGTC-GCTTTTGAATC-TT-TAAGCCGTGCGTTATCAAACCGAATCTT-TTC-----ACACATGGT-CACGATGG
gi|10 : TCA-GAGTACACCATTAAACG-CGA-GTGT-TTGAC-AA-AAAGTGCAAAG-CAATT-TCTATTTCGATTTGATG-CAC----------------ATGCC-TTCA-TTCTGTGGGT------TAGG----TTTGTGTAAA-------GCTTAC-----------TCAA--------TTTGC-TCATCTCG-TG-TG-TCCTGCCCTCATTTGAATccacgg
gi|12 : aatgcaacttctaaaagaC-ATATTACTAAT-CAGAAC---AAT--------TTTTTTT-TTTTCAAATAAGATGCTTT-TATACGACTTTTC--CCGTG-TTTAAC---GTCA-GTGCACAGCACTAATCA-CGA-GTGT-TTGAAT-ATAAA-TGCAAAA-CAATC-CCTATTTCAATG
gi|13 : TTTTGTAATCAACAATAA-TT-CTC-TCACATCA-TG-TGTTCC-GTCGGCTTTTGAATC-TT-T-AGCCGTGTGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGA
gi|14 : A-TTTTTGTAATCAACAATAA--TTCTC-TCACACCG-TG-TG-TCCAGTCGGTATTTGAATT-TCAT-AGGCGTa
gi|16 : CCGTGCGTT-----ACCGGGTCTT-TTC-----AC-CATGGTCCACGcggaagcaaattgaa
gi|2 : CCCCCCCCCCCCTGGGGTTGGGGTA-TCTGACGTTGAGTTAAATA-TGGTG-ATT--ATACGAGCTGGCATC-TTTTAATGATATGTTTTTGGACACATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCCGCG-TTA-ATCAATTTTTG-ACTAGC-ATTCCG--TAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGGAAACAAG-AAAA-TGAGCATTTATTTCTTC-ATAAGACTAAT-CAGAAC---AAT--------TTTTTTCGCCC-CAAGTAAGATGCTTT-TATGTGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGTAACTAAACA-CGA-GTGT-TTGACTAATAAAGTGCAAA--CAATTGCCTATTCAAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCA--TCCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGCCTTATA-ATTTTGTAATCAACAATAAGTCTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC--T-T-AGCCGTGCGTT-----ACCGAATCTT-GTC-----AC-CATGGT-CACCATGGACCg
gi|3 : ccgggcctgccCCCCCCCCCCCTCGGGGTTGGGGTA-TCTGACGTTGAGTTAAATA-TGGTG-ATT--ATACGAGCTGGCATC-TTTTAATGATATGTTTTTGGACACATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCCGCG-TTA-ATCAATTTTTG-ACTAGCCATTCCG--TAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGGAAACAAG-AAAA-T-GACATTTATTTCTTC-ATAAGACTAAT-CAGAAC---AAT--------TTTTTCG-CCC-GAAGTAAGATGCTTT-TATGTGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGTAACTAAACA-CGA-GTGT-TTGACTAATAAAGTGCAAA--CAATTGCCTATTCAAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCA--TCCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGCCTTATA-ATTTTGTAATCAACAATAAGTCTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC--T-T-AGCCGTGCGTT-----ACCGAATCTTGTTC-----AC-CATGGT-CACCATGGACC
gi|4 : CCACCCATCCCCTAGGG--AGGGGG-TCTGACGTAGAGTGTAGTAGTGATGGATT---TATAGGCTAG-AT---TTTAAT-ATATGTTTTTGGGCG-ATTT-AGAAAGTAAA--TATTCAATTCA-GAATC-GTTTACCA-ACGT---A-C-A---CTAC-TCGAAA-TCATTTCAC-CCAGCT-CT---TCAATTTTTG-ATCAGC-ATTCCCCCTAGTC----TGTATTTATA--T--T-CAATTTC-TACGCATGAAAACAAG-AAAAATAGACATTTATTTCCTCGATATTACTAATTCAGAAC---AAA--------TTTTTTT-TTT-CAA---AAATG-TTT-TATGCGACTTTATGCCTGTG-TTTAAA---GTCA-GCGCAAG-CACTAATCAGCGG-AGGT-TTGACATATAAAG--CAAAA-CAATC-CCTATTTCAATGTAATA-TAAGG--ACTTGAAGGATAATGCG-TTCATT-CCGTGGGG------TAGGT--ATTTTTT--AATTTA--GGCTTAAA-TTTTTGTAATCAACAA-AA-TT-CTCATCACA-CG-TGGTGTT-CTG-CGGCTTT-GAATCTTT-T-AG-CGTGCGTT-----ACCGGATCTT-TTC-----AC-CAT-GT-CACGATGGACC
gi|5 : cctggtccttaTTTAATGATATGTTTTTGGGCA-ATTTTAGAAAATAAAA-TATTCAATTCATAAATGTCTTTACCATACGT---T-AGAA--CTAC-TCGAAA-TTCTTTCGC-CCAGCG-TAACTTCAATTTTTG-ACCAGC-ATTCCCCTTAGTC----CGTATTT-TA--T--TTCAATTCC-TT-G-ATGAAAACAAG-AAAAACAGACATTTATTTCTTC-ATATTACTAAT-CAGAAC---AAT--------TTCTTTT-CCA-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGGTACTAAATA-CGA-GTAT-TTGACTAATAAA-TGCAAAA-CAATT-CCTATTTCAATGTGATA-TACAG--ACT-GAAGGGTAATGCC-ATCA-TTCCGTGGGATACATGTAGG--TATTTATTTTAATTTACGGGCTTATATTTTTTGTAATCAACAATAA--TTCTC-TCGCATCG-TG-TG-TTATGTCGGCTTTTGAATC-TT-T-AGTCGTGCGTT-----ACCGGATATT-TTC-----AC-CATGGT-CACGATGGTCCacgtgtg
gi|6 : TAATATGTTTTTGGACA-ATTT-AGAAAGTAAAAAT--TCAATTCATGAATCTGTTTACCATACGTAATTAC-AA--CTAC-TCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----TGTATTT-TA--T--TTCAATTCC-TA-G-ATGAAAACAAG-AAAAATAGACATTTATTTCTTC-ATATTACTAAT-CAGATC---AAT--------TTT--TT-CCC-CAAGGAAGATGCTTA-TATGTGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGGTACTGAACA-CGA-GTGT-TTGACTAATAAA-TGCAAA--CAATT--CTATTTCAATGTGATA-TACAG--GCT-GGAGGATAATGCC-TTCA-TTCCGTGGGA------TAGG--TA-TTTTTTAAATTT-CGGGCTTATATTTTTTGTAATCAACAATAA-TT--CC-TCATATCG-TG-T-TCTCTGTCGGCTTTTGAATC-TT-T-AGCCGTACGTT-----ACCGAATCTT-TTCACCATAC-CATGGT-CACGATGGACC
gi|7 : tcTTG-ATCAGT-ATTCCCCGTAGTC----CTT-TTT-TA--GAAC-CAATTTTATA-G-ATGAAAACATA-TCAA-TAGACATTTATTTCTTA-TTATCACTGAT-TGAAATATAAAT--------TGATT-------CAGGTATATTGCTTC-AATGTGACTTTTT---CGAA-CTAAGCAG-GTCAGGCGCACAACACTAAACA-CTA-GTGT-TTGACT-GTATAGTGCAAAG-TAATT-TCTATTTCGATGCAATG-TACacgg
gi|8 : tactcgtaatctcatcatcaaagTGACTAATAAA-TGCAAAA-CAATT-CCTATTTCAATGTAATA-TACAG--ACT-GAAGGATAA-------CATT-CCGTGGAA------TAGGT--ATTTTTTTAAATT-ACGGGCTTATA-TTTTTGTAATCAACAATAA-TT-CTC-TCACATCG-TG-TGTT-CTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGAATCTG-TTC-----AC-CATGGT-CACGGTGGACC
gi|9 : cAAGTGCAAAG-CAGTT-TTTATCTCGATGCGACA-CACAG--ACC-AAGGAATAATGCC-TTCATTCTC-TGG---------AGGTGTA-------AAACTTACAGGCTTATA-CTTTTGTAATCAACGATAA-TTTC-C-TCAACCCA-CG-TGTTTC-ATCCTCATTTGAATC-TT-T-AGCCATGCGTT-----ACTTGATCTT-TTC-----AC-CAAAGT-CATGATGGa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTATCTTTAGTTTATCTGAAAAGAGAAAACAGGTGAATTGTAAATATCAACTGCAAATCAATTATTTTTTATAACCCCCCCCCCCCCCCCCCCGATCAATGTTCGTTATCTTTGCCTTTATATGCGTTTGAAGATGTCAA
Unaligned ( gi|15 ): TTTTAAAGATTAGGCTGGACAATGATTTTGTAAACCCCCCCCCCCCCCCCCCCGATCAA
Alignments
lowQualScore : 11 11 1 1 111 11 1 1 1 1111111 1 1 1111 1111111 11111111 111 1 111 111111 222 1111 11111 11111
lowQualScore : 0 22 33 1 0 0 777 0 2 22 3 3 3 1 7777777 99 5 6 6 6 0 5 5 77 2222 5 4444444 5 5 5 0 5 5 888 88888888 666 55 5 66 5 555 4 66 4 4 4 3 0 4 3 7 4 66 4 4 999 222222 111 1 2 2 88 4444 3 3 3 8 4 2 44 4 4 00000 4 00000 4 4
lowQualScore : . .. .. . . . ... . . .. . . . . ....... .. . . . . . . . .. .... . ....... . . . . . . ... ........ ... .. . .. . ... . .. . . . . . . . . . .. . . ... ...... ... . . . .. .... . . . . . . .. . . ..... . ..... . .
lowQualScore : 7 88 22 0 0 0 000 2 5 55 7 3 3 3 2222222 22 0 7 7 7 8 7 7 33 1111 7 7777777 7 7 7 1 0 0 888 11111111 666 22 0 99 0 666 4 22 4 4 4 4 5 4 6 3 0 11 4 4 888 888888 888 9 0 9 11 1111 6 6 6 8 0 3 88 0 0 00000 0 00000 0 0
consensus : NNNNNNNNNNNCCCCCCCCCCCCCGGGGTTGGGGTA-TCTGACGTNGAGTTAAGTA-TGGTG-ATT--ATACGGGCTGGCATC-TTTTAATGATATGTTTTTGGACA-ATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGAAAACAAGAAAAATAGACATTTATTTCTTC-ATATTACTAAT-CAGAAC---AAT--------TTTTTTT-CCC-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCGAG-TTTAAC---GTCA-GCGCACGNCACTAAACA-CGA-GTGT-TTGACTAATAAAGTGCAAAA-CAATT-CCTATTTCAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCATTTCCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGGCTTATA-TTTTTGTAATCAACAATAA-TTTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGATGGACC
Reference ( family-2568 ) : NNNNNNNNNNNCCCCCCCCCCCCCGGGGTTGGGGTA-TCTGACGTNGAGTTAAGTA-TGGTG-ATT--ATACGGGCTGGCATC-TTTTAATGATATGTTTTTGGACA-ATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGAAAACAAGAAAAATAGACATTTATTTCTTC-ATATTACTAAT-CAGAAC---AAT--------TTTTTTT-CCC-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCGAG-TTTAAC---GTCA-GCGCACGNCACTAAACA-CGA-GTGT-TTGACTAATAAAGTGCAAAA-CAATT-CCTATTTCAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCATTTCCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGGCTTATA-TTTTTGTAATCAACAATAA-TTTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGATGGACC
gi|1 : GGGG--GGGGTAATCTGACGTGGAGTTAAGTA-TGGGG-ATTTTATAAAGGCTGGCATCCTTTTAATATTGTTTTTTTGGACA-ATTTCAGAAAGTAAAA-TATTCAATTCATGAATCTG-TTACCATA-GT---T-T-AAATTTA-CTCGAAATTCCGTTCACACCAGCGTTTACATCAATTTTTGAACCACC-ATTCCCCCTAGTCCGTACGTATTT-CATTT--T-TAATTTC-TA-G-ATGAAAACAAGAAAAATAGACA-TTATTT-TTC-ATATTACTATT-CAGAAC---AATCCCCCCCCCCCCCCC-CCC-CGAGTAAGATGCTTTATGTGTGACTTTTT--CAAAGTTTTAACGGTGTCA-ACGCACGTTACTAAA-A-CGATGTGTATTGACTAATAA--TGCAAAACCAATT-CCTATTTCAATGTGATATTACAATCCCT-GAAGGATAATGCCTTTCATTCCCGTGGGA------TAGG--TATTTTTTT-AATTTAC-GGCATATA-TTTTTGTAATCAACAATA---TTCTC-TCACATCGTTG-TG-TTCTGTC-GCTTTTGAATC-TT-TAAGCCGTGCGTTATCAAACCGAATCTT-TTC-----ACACATGGT-CACGATGG
gi|10 : TCA-GAGTACACCATTAAACG-CGA-GTGT-TTGAC-AA-AAAGTGCAAAG-CAATT-TCTATTTCGATTTGATG-CAC----------------ATGCC-TTCA-TTCTGTGGGT------TAGG----TTTGTGTAAA-------GCTTAC-----------TCAA--------TTTGC-TCATCTCG-TG-TG-TCCTGCCCTCATTTGAATccacgg
gi|12 : aatgcaacttctaaaagaC-ATATTACTAAT-CAGAAC---AAT--------TTTTTTT-TTTTCAAATAAGATGCTTT-TATACGACTTTTC--CCGTG-TTTAAC---GTCA-GTGCACAGCACTAATCA-CGA-GTGT-TTGAAT-ATAAA-TGCAAAA-CAATC-CCTATTTCAATG
gi|13 : TTTTGTAATCAACAATAA-TT-CTC-TCACATCA-TG-TGTTCC-GTCGGCTTTTGAATC-TT-T-AGCCGTGTGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGA
gi|14 : A-TTTTTGTAATCAACAATAA--TTCTC-TCACACCG-TG-TG-TCCAGTCGGTATTTGAATT-TCAT-AGGCGTa
gi|16 : CCGTGCGTT-----ACCGGGTCTT-TTC-----AC-CATGGTCCACGcggaagcaaattgaa
gi|2 : CCCCCCCCCCCCTGGGGTTGGGGTA-TCTGACGTTGAGTTAAATA-TGGTG-ATT--ATACGAGCTGGCATC-TTTTAATGATATGTTTTTGGACACATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCCGCG-TTA-ATCAATTTTTG-ACTAGC-ATTCCG--TAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGGAAACAAG-AAAATGAGCATTTATTTCTTC-ATAAGACTAAT-CAGAAC---AAT--------TTTTTTCGCCC-CAAGTAAGATGCTTT-TATGTGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGTAACTAAACA-CGA-GTGT-TTGACTAATAAAGTGC-AAA-CAATTGCCTATTCAAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCA--TCCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGCCTTATA-ATTTTGTAATCAACAATAAGTCTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC--T-T-AGCCGTGCGTT-----ACCGAATCTT-GTC-----AC-CATGGT-CACCATGGACCg
gi|3 : ccgggcctgccCCCCCCCCCCCTCGGGGTTGGGGTA-TCTGACGTTGAGTTAAATA-TGGTG-ATT--ATACGAGCTGGCATC-TTTTAATGATATGTTTTTGGACACATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCCGCG-TTA-ATCAATTTTTG-ACTAGCCATTCCG--TAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGGAAACAAGAAAA-T-GACATTTATTTCTTC-ATAAGACTAAT-CAGAAC---AAT--------TTTTTCG-CCC-GAAGTAAGATGCTTT-TATGTGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGTAACTAAACA-CGA-GTGT-TTGACTAATAAAGTGC-AAA-CAATTGCCTATTCAAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCA--TCCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGCCTTATA-ATTTTGTAATCAACAATAAGTCTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC--T-T-AGCCGTGCGTT-----ACCGAATCTTGTTC-----AC-CATGGT-CACCATGGACC
gi|4 : CCACCCATCCCCTAGGGAGGGGGT---CTGACGTAGAGTGTAGTAGTGATGGATT---TATAGGCTAG-AT---TTTAAT-ATATGTTTTTGGGCG-ATTT-AGAAAGTAAA--TATTCAATTCA-GAATC-GTTTACCA-ACGT---A-C-A---CTAC-TCGAAA-TCATTTCAC-CCAGCT-CT---TCAATTTTTG-ATCAGC-ATTCCCCCTAGTC----TGTATTTATA--T--T-CAATTTC-TACGCATGAAAACAAGAAAAATAGACATTTATTTCCTCGATATTACTAATTCAGAAC---AAA--------TTTTTTT-TTT-CAA---AAATG-TTT-TATGCGACTTTATGCCTGTG-TTTAAA---GTCA-GCGCAAG-CACTAATCAGCGG-AGGT-TTGACATATAAAG--CAAAA-CAATC-CCTATTTCAATGTAATA-TAAGG--ACTTGAAGGATAATGCG-TTCATT-CCGTGGGG------TAGGT--ATTTTTT--AATTTA--GGCTTAAA-TTTTTGTAATCAACAA-AA-TT-CTCATCACA-CG-TGGTGTT-CTG-CGGCTTT-GAATCTTT-T-AG-CGTGCGTT-----ACCGGATCTT-TTC-----AC-CAT-GT-CACGATGGACC
gi|5 : cctggtccttaTTTAATGATATGTTTTTGGGCA-ATTTTAGAAAATAAAA-TATTCAATTCATAAATGTCTTTACCATACGT---T-AGAA--CTAC-TCGAAA-TTCTTTCGC-CCAGCG-TAACTTCAATTTTTG-ACCAGC-ATTCCCCTTAGTC----CGTATTT-TA--T--TTCAATTCC-TT-G-ATGAAAACAAGAAAAACAGACATTTATTTCTTC-ATATTACTAAT-CAGAAC---AAT--------TTCTTTT-CCA-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGGTACTAAATA-CGA-GTAT-TTGACTAATAAA-TGCAAAA-CAATT-CCTATTTCAATGTGATA-TACAG--ACT-GAAGGGTAATGCC-ATCA-TTCCGTGGGATACATGTAGG--TATTTATTTTAATTTACGGGCTTATATTTTTTGTAATCAACAATAA--TTCTC-TCGCATCG-TG-TG-TTATGTCGGCTTTTGAATC-TT-T-AGTCGTGCGTT-----ACCGGATATT-TTC-----AC-CATGGT-CACGATGGTCCacgtgtg
gi|6 : TAATATGTTTTTGGACA-ATTT-AGAAAGTAAAAAT--TCAATTCATGAATCTGTTTACCATACGTAATTAC-AA--CTAC-TCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----TGTATTT-TA--T--TTCAATTCC-TA-G-ATGAAAACAAGAAAAATAGACATTTATTTCTTC-ATATTACTAAT-CAGATC---AAT--------TTT--TT-CCC-CAAGGAAGATGCTTA-TATGTGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGGTACTGAACA-CGA-GTGT-TTGACTAATAAA-TGC-AAA-CAATT--CTATTTCAATGTGATA-TACAG--GCT-GGAGGATAATGCC-TTCA-TTCCGTGGGA------TAGG--TA-TTTTTTAAATTT-CGGGCTTATATTTTTTGTAATCAACAATAA-TT--CC-TCATATCG-TG-T-TCTCTGTCGGCTTTTGAATC-TT-T-AGCCGTACGTT-----ACCGAATCTT-TTCACCATAC-CATGGT-CACGATGGACC
gi|7 : tcTTG-ATCAGT-ATTCCCCGTAGTC----CTT-TTT-TA--GAAC-CAATTTTATA-G-ATGAAAACA-TATCAATAGACATTTATTTCTTA-TTATCACTGAT-TGAAATATAAAT--------TGATT-------CAGGTATATTGCTTC-AATGTGACTTTTT---CGAA-CTAAGCAG-GTCAGGCGCACAACACTAAACA-CTA-GTGT-TTGACT-GTATAGTGCAAAG-TAATT-TCTATTTCGATGCAATG-TACacgg
gi|8 : tactcgtaatctcatcatcaaagTGACTAATAAA-TGCAAAA-CAATT-CCTATTTCAATGTAATA-TACAG--ACT-GAAGGATAA-------CATT-CCGTGGAA------TAGGT--ATTTTTTTAAATT-ACGGGCTTATA-TTTTTGTAATCAACAATAA-TT-CTC-TCACATCG-TG-TGTT-CTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGAATCTG-TTC-----AC-CATGGT-CACGGTGGACC
gi|9 : cAAGTGCAAAG-CAGTT-TTTATCTCGATGCGACA-CACAG--ACC-AAGGAATAATGCC-TTCATTCTC-TGG---------AGGTGTA-------AAACTTACAGGCTTATA-CTTTTGTAATCAACGATAA-TTTC-C-TCAACCCA-CG-TGTTTC-ATCCTCATTTGAATC-TT-T-AGCCATGCGTT-----ACTTGATCTT-TTC-----AC-CAAAGT-CATGATGGa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTATCTTTAGTTTATCTGAAAAGAGAAAACAGGTGAATTGTAAATATCAACTGCAAATCAATTATTTTTTATAACCCCCCCCCCCCCCCCCCCGATCAATGTTCGTTATCTTTGCCTTTATATGCGTTTGAAGATGTCAA
Unaligned ( gi|15 ): TTTTAAAGATTAGGCTGGACAATGATTTTGTAAACCCCCCCCCCCCCCCCCCCGATCAA
Alignments
lowQualScore : 11 11 1 1 111 11 1 1 1 1111111 1 1 1111 1111111 11111111 111 1 111 111111 222 1111 11111 11111
lowQualScore : 0 22 33 1 0 0 777 0 2 22 3 3 3 1 7777777 99 5 6 6 6 0 5 5 77 2222 5 4444444 5 5 5 0 5 5 888 88888888 666 55 5 66 5 555 4 66 4 4 4 3 0 4 3 7 4 66 4 4 999 222222 111 1 2 2 88 4444 3 3 3 8 4 2 44 4 4 00000 4 00000 4 4
lowQualScore : . .. .. . . . ... . . .. . . . . ....... .. . . . . . . . .. .... . ....... . . . . . . ... ........ ... .. . .. . ... . .. . . . . . . . . . .. . . ... ...... ... . . . .. .... . . . . . . .. . . ..... . ..... . .
lowQualScore : 7 88 22 0 0 0 000 2 5 55 7 3 3 3 2222222 22 0 7 7 7 8 7 7 33 1111 7 7777777 7 7 7 1 0 0 888 11111111 666 22 0 99 0 666 4 22 4 4 4 4 5 4 6 3 0 11 4 4 888 888888 888 9 0 9 11 1111 6 6 6 8 0 3 88 0 0 00000 0 00000 0 0
consensus : NNNNNNNNNNNCCCCCCCCCCCCCGGGGTTGGGGTA-TCTGACGTNGAGTTAAGTA-TGGTG-ATT--ATACGGGCTGGCATC-TTTTAATGATATGTTTTTGGACA-ATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGAAAACAAGAAAAATAGACATTTATTTCTTC-ATATTACTAAT-CAGAAC---AAT--------TTTTTTT-CCC-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCGAG-TTTAAC---GTCA-GCGCACGNCACTAAACA-CGA-GTGT-TTGACTAATAAAGTGCAAAA-CAATT-CCTATTTCAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCATTTCCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGGCTTATA-TTTTTGTAATCAACAATAA-TTTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGATGGACC
Reference ( family-2568 ) : NNNNNNNNNNNCCCCCCCCCCCCCGGGGTTGGGGTA-TCTGACGTNGAGTTAAGTA-TGGTG-ATT--ATACGGGCTGGCATC-TTTTAATGATATGTTTTTGGACA-ATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGAAAACAAGAAAAATAGACATTTATTTCTTC-ATATTACTAAT-CAGAAC---AAT--------TTTTTTT-CCC-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCGAG-TTTAAC---GTCA-GCGCACGNCACTAAACA-CGA-GTGT-TTGACTAATAAAGTGCAAAA-CAATT-CCTATTTCAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCATTTCCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGGCTTATA-TTTTTGTAATCAACAATAA-TTTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGATGGACC
gi|1 : GGGG--GGGGTAATCTGACGTGGAGTTAAGTA-TGGGG-ATTTTATAAAGGCTGGCATCCTTTTAATATTGTTTTTTTGGACA-ATTTCAGAAAGTAAAA-TATTCAATTCATGAATCTG-TTACCATA-GT---T-T-AAATTTA-CTCGAAATTCCGTTCACACCAGCGTTTACATCAATTTTTGAACCACC-ATTCCCCCTAGTCCGTACGTATTT-CATTT--T-TAATTTC-TA-G-ATGAAAACAAGAAAAATAGACA-TTATTT-TTC-ATATTACTATT-CAGAAC---AATCCCCCCCCCCCCCCC-CCC-CGAGTAAGATGCTTTATGTGTGACTTTTT--CAAAGTTTTAACGGTGTCA-ACGCACGTTACTAAA-A-CGATGTGTATTGACTAATAA--TGCAAAACCAATT-CCTATTTCAATGTGATATTACAATCCCT-GAAGGATAATGCCTTTCATTCCCGTGGGA------TAGG--TATTTTTTT-AATTTAC-GGCATATA-TTTTTGTAATCAACAATA---TTCTC-TCACATCGTTG-TG-TTCTGTC-GCTTTTGAATC-TT-TAAGCCGTGCGTTATCAAACCGAATCTT-TTC-----ACACATGGT-CACGATGG
gi|10 : TCA-GAGTACACCATTAAACG-CGA-GTGT-TTGAC-AA-AAAGTGCAAAG-CAATT-TCTATTTCGATTTGATG-CAC----------------ATGCC-TTCA-TTCTGTGGGT------TAGG----TTTGTGTAAA-------GCTTAC-----------TCAA--------TTTGC-TCATCTCG-TG-TG-TCCTGCCCTCATTTGAATccacgg
gi|12 : aatgcaacttctaaaagaC-ATATTACTAAT-CAGAAC---AAT--------TTTTTTT-TTTTCAAATAAGATGCTTT-TATACGACTTTTC--CCGTG-TTTAAC---GTCA-GTGCACAGCACTAATCA-CGA-GTGT-TTGAAT-ATAAA-TGCAAAA-CAATC-CCTATTTCAATG
gi|13 : TTTTGTAATCAACAATAA-TT-CTC-TCACATCA-TG-TGTTCC-GTCGGCTTTTGAATC-TT-T-AGCCGTGTGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGA
gi|14 : A-TTTTTGTAATCAACAATAA--TTCTC-TCACACCG-TG-TG-TCCAGTCGGTATTTGAATT-TCAT-AGGCGTa
gi|16 : CCGTGCGTT-----ACCGGGTCTT-TTC-----AC-CATGGTCCACGcggaagcaaattgaa
gi|2 : CCCCCCCCCCCCTGGGGTTGGGGTA-TCTGACGTTGAGTTAAATA-TGGTG-ATT--ATACGAGCTGGCATC-TTTTAATGATATGTTTTTGGACACATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCCGCG-TTA-ATCAATTTTTG-ACTAGC-ATTCCG--TAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGGAAACAAG-AAAATGAGCATTTATTTCTTC-ATAAGACTAAT-CAGAAC---AAT--------TTTTTTCGCCC-CAAGTAAGATGCTTT-TATGTGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGTAACTAAACA-CGA-GTGT-TTGACTAATAAAGTGC-AAA-CAATTGCCTATTCAAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCA--TCCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGCCTTATA-ATTTTGTAATCAACAATAAGTCTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC--T-T-AGCCGTGCGTT-----ACCGAATCTT-GTC-----AC-CATGGT-CACCATGGACCg
gi|3 : ccgggcctgccCCCCCCCCCCCTCGGGGTTGGGGTA-TCTGACGTTGAGTTAAATA-TGGTG-ATT--ATACGAGCTGGCATC-TTTTAATGATATGTTTTTGGACACATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCCGCG-TTA-ATCAATTTTTG-ACTAGCCATTCCG--TAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGGAAACAAGAAAA-T-GACATTTATTTCTTC-ATAAGACTAAT-CAGAAC---AAT--------TTTTTCG-CCC-GAAGTAAGATGCTTT-TATGTGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGTAACTAAACA-CGA-GTGT-TTGACTAATAAAGTGC-AAA-CAATTGCCTATTCAAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCA--TCCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGCCTTATA-ATTTTGTAATCAACAATAAGTCTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC--T-T-AGCCGTGCGTT-----ACCGAATCTTGTTC-----AC-CATGGT-CACCATGGACC
gi|4 : CCACCCATCCCCTAGGGAGGGGGT---CTGACGTAGAGTGTAGTAGTGATGGATT---TATAGGCTAG-AT---TTTAAT-ATATGTTTTTGGGCG-ATTT-AGAAAGTAAA--TATTCAATTCA-GAATC-GTTTACCA-ACGT---A-C-A---CTAC-TCGAAA-TCATTTCAC-CCAGCT-CT---TCAATTTTTG-ATCAGC-ATTCCCCCTAGTC----TGTATTTATA--T--T-CAATTTC-TACGCATGAAAACAAGAAAAATAGACATTTATTTCCTCGATATTACTAATTCAGAAC---AAA--------TTTTTTT-TTT-CAA---AAATG-TTT-TATGCGACTTTATGCCTGTG-TTTAAA---GTCA-GCGCAAG-CACTAATCAGCGG-AGGT-TTGACATATAAAG--CAAAA-CAATC-CCTATTTCAATGTAATA-TAAGG--ACTTGAAGGATAATGCG-TTCATT-CCGTGGGG------TAGGT--ATTTTTT--AATTTA--GGCTTAAA-TTTTTGTAATCAACAA-AA-TT-CTCATCACA-CG-TGGTGTT-CTG-CGGCTTT-GAATCTTT-T-AG-CGTGCGTT-----ACCGGATCTT-TTC-----AC-CAT-GT-CACGATGGACC
gi|5 : cctggtccttaTTTAATGATATGTTTTTGGGCA-ATTTTAGAAAATAAAA-TATTCAATTCATAAATGTCTTTACCATACGT---T-AGAA--CTAC-TCGAAA-TTCTTTCGC-CCAGCG-TAACTTCAATTTTTG-ACCAGC-ATTCCCCTTAGTC----CGTATTT-TA--T--TTCAATTCC-TT-G-ATGAAAACAAGAAAAACAGACATTTATTTCTTC-ATATTACTAAT-CAGAAC---AAT--------TTCTTTT-CCA-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGGTACTAAATA-CGA-GTAT-TTGACTAATAAA-TGCAAAA-CAATT-CCTATTTCAATGTGATA-TACAG--ACT-GAAGGGTAATGCC-ATCA-TTCCGTGGGATACATGTAGG--TATTTATTTTAATTTACGGGCTTATATTTTTTGTAATCAACAATAA--TTCTC-TCGCATCG-TG-TG-TTATGTCGGCTTTTGAATC-TT-T-AGTCGTGCGTT-----ACCGGATATT-TTC-----AC-CATGGT-CACGATGGTCCacgtgtg
gi|6 : TAATATGTTTTTGGACA-ATTT-AGAAAGTAAAAAT--TCAATTCATGAATCTGTTTACCATACGTAATTAC-AA--CTAC-TCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----TGTATTT-TA--T--TTCAATTCC-TA-G-ATGAAAACAAGAAAAATAGACATTTATTTCTTC-ATATTACTAAT-CAGATC---AAT--------TTT--TT-CCC-CAAGGAAGATGCTTA-TATGTGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGGTACTGAACA-CGA-GTGT-TTGACTAATAAA-TGC-AAA-CAATT--CTATTTCAATGTGATA-TACAG--GCT-GGAGGATAATGCC-TTCA-TTCCGTGGGA------TAGG--TA-TTTTTTAAATTT-CGGGCTTATATTTTTTGTAATCAACAATAA-TT--CC-TCATATCG-TG-T-TCTCTGTCGGCTTTTGAATC-TT-T-AGCCGTACGTT-----ACCGAATCTT-TTCACCATAC-CATGGT-CACGATGGACC
gi|7 : tcTTG-ATCAGT-ATTCCCCGTAGTC----CTT-TTT-TA--GAAC-CAATTTTATA-G-ATGAAAACA-TATCAATAGACATTTATTTCTTA-TTATCACTGAT-TGAAATATAAAT--------TGATT-------CAGGTATATTGCTTC-AATGTGACTTTTT---CGAA-CTAAGCAG-GTCAGGCGCACAACACTAAACA-CTA-GTGT-TTGACT-GTATAGTGCAAAG-TAATT-TCTATTTCGATGCAATG-TACacgg
gi|8 : tactcgtaatctcatcatcaaagTGACTAATAAA-TGCAAAA-CAATT-CCTATTTCAATGTAATA-TACAG--ACT-GAAGGATAA-------CATT-CCGTGGAA------TAGGT--ATTTTTTTAAATT-ACGGGCTTATA-TTTTTGTAATCAACAATAA-TT-CTC-TCACATCG-TG-TGTT-CTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGAATCTG-TTC-----AC-CATGGT-CACGGTGGACC
gi|9 : cAAGTGCAAAG-CAGTT-TTTATCTCGATGCGACA-CACAG--ACC-AAGGAATAATGCC-TTCATTCTC-TGG---------AGGTGTA-------AAACTTACAGGCTTATA-CTTTTGTAATCAACGATAA-TTTC-C-TCAACCCA-CG-TGTTTC-ATCCTCATTTGAATC-TT-T-AGCCATGCGTT-----ACTTGATCTT-TTC-----AC-CAAAGT-CATGATGGa
blockSeqs : TT A T G G A C C G C T A AATTAC . C . . . C . C CC . A GAAC A C C G T ATA . TCG TT . GC . AG G CC G . . A G A . G . . T . TTC TACATG TGT T A G TT GTCT A . G T C T TT A . . G ACCAT . C
blockSeqs : TT A T . . A C C G C . A TAG . C . . . C . . CT . . TTT . . . . . . . TT C . . . . . GC . . . A G A . G . . . . TT . TT T A G TT GTCT . . . T C A T . . . . . . .
blockSeqs : AG . A . . . . . G . . A TC . . . . . . . . CC . . TTT . . . . . . . CG C . . . . . TA . . . A G A . . . . . . TT . TT T A G T TTT . . . T C T T . . . . . . .
blockSeqs : A . . . TC . . . . . . . . CG . . TT . . . . . . . TT T . . . . . TA . . . T G A . . . . . . TT . T T T G A TT . . . T T T T . . . . . . .
blockSeqs : . . . . AC . . . . . . . . . . . TT . . . . . . . TT A . . . . . GT . . . A G A . . . . . . TT . T T A G A TT . . . T T T T . . . . . . .
blockSeqs : . . . . . TT . . . . . . . TT C . . . . . GT . . . A G A . . . . . . TT . T T A A T TT . . . T T T T . . . . . . .
blockSeqs : . . . . . . . . . . . AC . . . A . A . . . . . . T . T . A . T TT . . . T T T T . . . . . . .
blockSeqs : . C . . . . . . . . . . . . T . . . . . C TT . . . . T T . . . . . . . .
blockSeqs : . . . . . . . TT . . . . . . . . . . . . . .
blockSeqs : . . . . TT . . . . . .
blockSeqCons : ** **** TTT**** ******** *** ** TT* *****
originalCons : NNNNNNNNNNNCCCCCCCCCCCCCGGGGTTGGGGTA-TCTGACGTNGAGTTAAGTA-TGGTG-ATT--ATACGGGCTGGCATC-TTTTAATGATATGTTTTTGGACA-ATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----CGTATTT-TA--T--T-CAATTCC-TA-G-ATGAAAACAAGAAAAATAGACATTTATTTCTTC-ATATTACTAAT-CAGAAC---AAT--------TTTTTTT-CCC-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCGAG-TTTAAC---GTCA-GCGCACGNCACTAAACA-CGA-GTGT-TTGACTAATAAAGTGCAAAA-CAATT-CCTATTTCAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCATTTCCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGGCTTATA-TTTTTGTAATCAACAATAA-TTTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGATGGACC
finalCons : NNNNNNNNNNNCCCCCCCCCCCCCGGGGTTGGGGTA-TCTGACGTNGAGTTAAGTA-TGGTG-ATT--ATACGGGCTGGCATC-TTTTAATGATATGTTTTTGGACA-ATTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-C-AA--CTACCTCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----CGTATTT-TATTT----CAATTCC-TA-G-ATGAAAACAAGAAAAATAGACATTTATTTCTTC-ATATTACTAAT-CAGAAC---AAT--------TTTTTTT-CCC-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCGAG-TTTAAC---GTCA-GCGCACGNCACTAAACA-CGA-GTGT-TTGACTAATAAAGTGCAAAA-CAATT-CCTATTTCAATGTGATA-TACAG--ACT-GAAGGATAATGCC-TTCATT-CCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGGCTTATA-TTTTTGTAATCAACAATAA-TTTCTC-TCACATCG-TG-TGTTTCTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGATGGACC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTATCTTTAGTTTATCTGAAAAGAGAAAACAGGTGAATTGTAAATATCAACTGCAAATCAATTATTTTTTATAACCCCCCCCCCCCCCCCCCCGATCAATGTTCGTTATCTTTGCCTTTATATGCGTTTGAAGATGTCAA
Unaligned ( gi|15 ): TTTTAAAGATTAGGCTGGACAATGATTTTGTAAACCCCCCCCCCCCCCCCCCCGATCAA
Alignments
lowQualScore : 11 11 1 1 111 11 1 22222 11 1 1111 111111 111111111 111 1 111111 22 11 11 11111 11111
lowQualScore : 0 22 33 1 0 0 777 0 2 22 3 3 6 6 3 00000 99 33 6 6 6 0 5 5 77 2222 333333 5 5 5 0 5 5 888 888888888 666 55 5 66 5 555 4 66 4 4 4 3 5 4 3 7 4 66 4 4 1 4 222222 22 1 2 2 88 66 4 3 3 22 2 2 44 4 4 00000 4 00000 4 4
lowQualScore : . .. .. . . . ... . . .. . . . . . ..... .. .. . . . . . . .. .... ...... . . . . . . ... ......... ... .. . .. . ... . .. . . . . . . . . . .. . . . . ...... .. . . . .. .. . . . .. . . .. . . ..... . ..... . .
lowQualScore : 7 88 22 0 0 0 000 2 5 55 7 3 7 7 2 33333 22 33 7 7 7 8 7 7 33 1111 444444 7 7 7 1 0 0 888 555555555 666 22 0 99 0 666 4 22 4 4 4 4 0 4 6 3 0 11 4 4 9 4 888888 77 9 0 9 11 00 4 6 6 55 3 5 88 0 0 00000 0 00000 0 0
consensus : NNNNNNNNNNNCCCCCCCCCCCCCGGGGTTGGGGTA-TCTGACGTNGAGTTAAGTA-TGGTG-ATT--ATACGGGCTGGCATC-TTTTAATGATATGTTTTTGGACA-A-TTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-CAA--CTACCTCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----CGTATTTTA-T-T-TCAATTCC-TA-G-ATGAAAACAAGAAAAATAGACATTTATTTCTTC-ATATTACTAA-TCAGAAC---AAT--------TTTTTTT-CCC-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCGAG-TTTAAC---GTCA-GCGCACGNCACTAAACA-CGA-GTGT-TTGACTAATAAAGTGCAAAA-CAATT-CCTATTTCAATGTGATA-TACAG--AC-TGAAGGATAATGCC-TTCATT-CCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGGCTTATA-TTTTTGTAATCAACAATAA-TTTCTC-TCACATCG-TGTGT-TTCTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGATGGACC
Reference ( family-2568 ) : NNNNNNNNNNNCCCCCCCCCCCCCGGGGTTGGGGTA-TCTGACGTNGAGTTAAGTA-TGGTG-ATT--ATACGGGCTGGCATC-TTTTAATGATATGTTTTTGGACA-A-TTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-CAA--CTACCTCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----CGTATTTTA-T-T-TCAATTCC-TA-G-ATGAAAACAAGAAAAATAGACATTTATTTCTTC-ATATTACTAA-TCAGAAC---AAT--------TTTTTTT-CCC-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCGAG-TTTAAC---GTCA-GCGCACGNCACTAAACA-CGA-GTGT-TTGACTAATAAAGTGCAAAA-CAATT-CCTATTTCAATGTGATA-TACAG--AC-TGAAGGATAATGCC-TTCATT-CCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGGCTTATA-TTTTTGTAATCAACAATAA-TTTCTC-TCACATCG-TGTGT-TTCTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGATGGACC
gi|1 : GGGG--GGGGTAATCTGACGTGGAGTTAAGTA-TGGGG-ATTTTATAAAGGCTGGCATCCTTTTAATATTGTTTTTTTGGACA-A-TTTCAGAAAGTAAAA-TATTCAATTCATGAATCTG-TTACCATA-GT---T-TAAATTTA-CTCGAAATTCCGTTCACACCAGCGTTTACATCAATTTTTGAACCACC-ATTCCCCCTAGTCCGTACGTATTTCATT-T-TTAATTTC-TA-G-ATGAAAACAAGAAAAATAGACA-TTATTT-TTC-ATATTACTAT-TCAGAAC---AATCCCCCCCCCCCCCCC-CCC-CGAGTAAGATGCTTTATGTGTGACTTTTT--CAAAGTTTTAACGGTGTCA-ACGCACGTTACTAAA-A-CGATGTGTATTGACTAATAA--TGCAAAACCAATT-CCTATTTCAATGTGATATTACAATCCC-TGAAGGATAATGCCTTTCATTCCCGTGGGA------TAGG--TATTTTTTT-AATTTAC-GGCATATA-TTTTTGTAATCAACAATA---TTCTC-TCACATCGTTGTG--TTCTGTC-GCTTTTGAATC-TT-TAAGCCGTGCGTTATCAAACCGAATCTT-TTC-----ACACATGGT-CACGATGG
gi|10 : TCA-GAGTACACCATTAAACG-CGA-GTGT-TTGAC-AA-AAAGTGCAAAG-CAATT-TCTATTTCGATTTGATG-CAC----------------ATGCC-TTCATT-CTGTGGGT------TAGG----TTTGTGTAAA-------GCTTAC-----------TCAA--------TTTGC-TCATCTCG-TGTG--TCCTGCCCTCATTTGAATccacgg
gi|12 : aatgcaacttctaaaagaC-ATATTACTAA-TCAGAAC---AAT--------TTTTTTT-TTTTCAAATAAGATGCTTT-TATACGACTTTTC--CCGTG-TTTAAC---GTCA-GTGCACAGCACTAATCA-CGA-GTGT-TTGAAT-ATAAA-TGCAAAA-CAATC-CCTATTTCAATG
gi|13 : TTTTGTAATCAACAATAA-TT-CTC-TCACATCA-TGTGT-TCC-GTCGGCTTTTGAATC-TT-T-AGCCGTGTGTT-----ACCGGATCTT-TTC-----AC-CATGGT-CACGA
gi|14 : A-TTTTTGTAATCAACAATAA--TTCTC-TCACACCG-TGTG--TCCAGTCGGTATTTGAATT-TCAT-AGGCGTa
gi|16 : CCGTGCGTT-----ACCGGGTCTT-TTC-----AC-CATGGTCCACGcggaagcaaattgaa
gi|2 : CCCCCCCCCCCCTGGGGTTGGGGTA-TCTGACGTTGAGTTAAATA-TGGTG-ATT--ATACGAGCTGGCATC-TTTTAATGATATGTTTTTGGACACA-TTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-CAA--CTACCTCGAAA-TCCTTTCAC-CCCGCG-TTA-ATCAATTTTTG-ACTAGC-ATTCCG--TAGTC----CGTATTTTA-T-T--CAATTCC-TA-G-ATGGAAACAAG-AAAATGAGCATTTATTTCTTC-ATAAGACTAA-TCAGAAC---AAT--------TTTTTTCGCCC-CAAGTAAGATGCTTT-TATGTGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGTAACTAAACA-CGA-GTGT-TTGACTAATAAAGTGC-AAA-CAATTGCCTATTCAAATGTGATA-TACAG--AC-TGAAGGATAATGCC-TTCA-T-CCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGCCTTATA-ATTTTGTAATCAACAATAAGTCTCTC-TCACATCG-TGTGT-TTCTGTCGGCTTTTGAATC--T-T-AGCCGTGCGTT-----ACCGAATCTT-GTC-----AC-CATGGT-CACCATGGACCg
gi|3 : ccgggcctgccCCCCCCCCCCCTCGGGGTTGGGGTA-TCTGACGTTGAGTTAAATA-TGGTG-ATT--ATACGAGCTGGCATC-TTTTAATGATATGTTTTTGGACACA-TTT-AGAAAGTAAAAATATTCAATTCATGAATCTGTTTACCATACGT---T-CAA--CTACCTCGAAA-TCCTTTCAC-CCCGCG-TTA-ATCAATTTTTG-ACTAGCCATTCCG--TAGTC----CGTATTTTA-T-T--CAATTCC-TA-G-ATGGAAACAAGAAAA-T-GACATTTATTTCTTC-ATAAGACTAA-TCAGAAC---AAT--------TTTTTCG-CCC-GAAGTAAGATGCTTT-TATGTGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGTAACTAAACA-CGA-GTGT-TTGACTAATAAAGTGC-AAA-CAATTGCCTATTCAAATGTGATA-TACAG--AC-TGAAGGATAATGCC-TTCA-T-CCGTGGGA------TAGGT-TATTTTTTTAAATTTACGGCCTTATA-ATTTTGTAATCAACAATAAGTCTCTC-TCACATCG-TGTGT-TTCTGTCGGCTTTTGAATC--T-T-AGCCGTGCGTT-----ACCGAATCTTGTTC-----AC-CATGGT-CACCATGGACC
gi|4 : CCACCCATCCCCTAGGGAGGGGGT---CTGACGTAGAGTGTAGTAGTGATGGATT---TATAGGCTAG-AT---TTTAAT-ATATGTTTTTGGGCG-A-TTT-AGAAAGTAAA--TATTCAATTCA-GAATC-GTTTACCA-ACGT---A-CA---CTAC-TCGAAA-TCATTTCAC-CCAGCT-CT---TCAATTTTTG-ATCAGC-ATTCCCCCTAGTC----TGTA-TTTA-TAT-TCAATTTC-TACGCATGAAAACAAGAAAAATAGACATTTATTTCCTCGATATTACTAATTCAGAAC---AAA--------TTTTTTT-TTT-CA---AAAATG-TTT-TATGCGACTTTATGCCTGTG-TTTAAA---GTCA-GCGCAAG-CACTAATCAGCGG-AGGT-TTGACATATAAA--GCAAAA-CAATC-CCTATTTCAATGTAATA-TAAGG--ACTTGAAGGATAATGCG-TTCATT-CCGTGGGG------TAGG--TATTTTTT--AATTTA--GGCTTAAA-TTTTTGTAATCAACAA-AA--TTCTCATCACA-CG-TG-GTGTTCTG-CGGC-TTTGAATCTTT-T-AG-CGTGCGTT-----ACCGGATCTT-TTC-----AC-CAT-GT-CACGATGGACC
gi|5 : cctggtccttaTTTAATGATATGTTTTTGGGCA-ATTTT-AGAAAAT-AAAATATTCAATTCATAAATGTCTTTACCATACGT---TAGAA--CTA-CTCGAAA-TTCTTTCGC-CCAGCG-TAACTTCAATTTTTG-ACCAGC-ATTCCCCTTAGTC----CGTATTTTA-T-T-TCAATTCC-TT-G-ATGAAAACAAGAAAAACAGACATTTATTTCTTC-ATATTACTAA-TCAGAAC---AAT--------TTCTTTT-CCA-CAAGTAAGATGCTTT-TATGCGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGGTACTAAATA-CGA-GTAT-TTGACTAATAAA-TGCAAAA-CAATT-CCTATTTCAATGTGATA-TACAG--AC-TGAAGGGTAATGCC-ATCATT-CCGTGGGATACATGTAGG--TATTTATTTTAATTTACGGGCTTATATTTTTTGTAATCAACAATAA--TTCTC-TCGCATCG-TGTG--TTATGTCGGCTTTTGAATC-TT-T-AGTCGTGCGTT-----ACCGGATATT-TTC-----AC-CATGGT-CACGATGGTCCacgtgtg
gi|6 : TAATATGTTTTTGGACA-A-TTT-AGAAAGTAAAAAT--TCAATTCATGAATCTGTTTACCATACGTAATTACAA--CTAC-TCGAAA-TCCTTTCAC-CCAGCG-TTACATCAATTTTTG-ACCAGC-ATTCCCCCTAGTC----TGTATTTTA-T-T-TCAATTCC-TA-G-ATGAAAACAAGAAAAATAGACATTTATTTCTTC-ATATTACTAA-TCAGATC---AA----------TTTTTT-CCC-CAAGGAAGATGCTTA-TATGTGACTTTTT--CCAAG-TTTAAC---GTCA-ACGCACGGTACTGAACA-CGA-GTGT-TTGACTAATAAA-TGC-AAA-CAATT--CTATTTCAATGTGATA-TACAG--GC-TGGAGGATAATGCC-TTCATT-CCGTGGGA------TAGG--TA-TTTTTTAAATTT-CGGGCTTATATTTTTTGTAATCAACAATAA-TT--CC-TCATATCG-TGT-T-CTCTGTCGGCTTTTGAATC-TT-T-AGCCGTACGTT-----ACCGAATCTT-TTCACCATAC-CATGGT-CACGATGGACC
gi|7 : tcTTG-ATCAGT-ATTCCCCGTAGTC----CTT-TTTTA-G-AACCAATTTTATA-G-ATGAAAACA-TATCAATAGACATTTATTTCTTA-TTATCACTGA-TTGAAATATAAAT--------TGATT-------CAGGTATATTGCTTC-AATGTGACTTTTT---CGAA-CTAAGCAG-GTCAGGCGCACAACACTAAACA-CTA-GTGT-TTGACT-GTATAGTGCAAAG-TAATT-TCTATTTCGATGCAATG-TACacgg
gi|8 : tactcgtaatctcatcatcaaagTGACTAATAAA-TGCAAAA-CAATT-CCTATTTCAATGTAATA-TACAG--AC-TGAAGGATAA-------CATT-CCGTGGAA------TAGGT--ATTTTTTTAAATT-ACGGGCTTATA-TTTTTGTAATCAACAATAA-TT-CTC-TCACATCG-TGTGT-T-CTGTCGGCTTTTGAATC-TT-T-AGCCGTGCGTT-----ACCGAATCTG-TTC-----AC-CATGGT-CACGGTGGACC
gi|9 : cAAGTGCAAAG-CAGTT-TTTATCTCGATGCGACA-CACAG--AC-CAAGGAATAATGCC-TTCATT-CTCTGG---------AGGTGTA-------AAACTTACAGGCTTATA-CTTTTGTAATCAACGATAA-TTTC-C-TCAACCCA-CGTGT-TTC-ATCCTCATTTGAATC-TT-T-AGCCATGCGTT-----ACTTGATCTT-TTC-----AC-CAAAGT-CATGATGGa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTATCTTTAGTTTATCTGAAAAGAGAAAACAGGTGAATTGTAAATATCAACTGCAAATCAATTATTTTTTATAACCCCCCCCCCCCCCCCCCCGATCAATGTTCGTTATCTTTGCCTTTATATGCGTTTGAAGATGTCAA
Unaligned ( gi|15 ): TTTTAAAGATTAGGCTGGACAATGATTTTGTAAACCCCCCCCCCCCCCCCCCCGATCAA