lowQualScore : 33333333333333333333 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 4444444444 22 11 2222 1 11 555555555 22222222222222222222 4 444444444 22 3333 111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 1 1 1 1 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 4444444444444 1 33333333333333 1111111 3 111 1111 2222 333333333 2222 333333333333 1 33 11 11 3 1 11111111111111111111111111 2 22 4 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 666666 4 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 4
lowQualScore : 0 0 33 3 3333333333 00 88 8888 1 3 1 88 7 222222222 77 55555555555555555555 0 6 3 111111111 6 11 3 1111 7 7 444 3 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 33 4 0 444 0 0 0 0 3 7 7 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 2222222222222 0 66666666666666 6 8888888 1 111 4444 6 3333 3 777777777 6 5 6 6 6 1111 11 8 6 333333333333 8 8 0 8 4 2 5 33 88 88 1 1 3 66666666666666666666666666 6 0 77 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 6 6 777777 0 6 6 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 7 0
lowQualScore : . . .. . .......... .. .. .... . . . .. . ......... .. .................... . . . ......... . .. . .... . . ... . .............................................................................................................................................................................................. .. . . ... . . . . . . . ............................................................................................................................................................................................................................................................................................... . ............. . .............. . ....... . ... .... . .... . ......... . . . . . .... .. . . ............ . . . . . . . .. .. .. . . . .......................... . . .. . ....................................................................................................................................................................................................... . . . ...... . . . . ......................................................................................................... . . .
lowQualScore : 7 2 88 2 8888888888 77 33 3333 0 3 0 33 3 000000000 00 00000000000000000000 0 0 0 333333333 0 00 0 5555 0 3 777 7 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 55 5 2 000 0 0 0 0 3 3 3 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 6666666666666 0 22222222222222 7 3333333 8 777 2222 7 3333 7 333333333 7 7 7 7 7 3333 88 0 0 000000000000 0 0 6 0 0 5 5 00 33 33 0 7 3 55555555555555555555555555 0 0 55 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 000000 0 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0
consensus : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGA-CGAG--CCCAAGATC-A-TA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGNAAGTGCACTACTAGCCGCTC----TT-AACATCCCCGGGATANCAGGGGGAAAAGCCTGAAGAGCCG-AGAAANAGACTCTGAGAGGTCNGTANGACATCCTGGTGCAAACACTCCCTCACANAATATGTGATAATAGACTGTGTATTGTTTTCATAGCATC-CTCTCACAAAGACATTTTTTCATTCGCCCATATAAAGGGAA-GCACCGA-TACC-AT---------GTGAAAGTGG---TTTT-A-----AAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATGT-AAAT-GATTTCTAC-TTACATTACATTAC--CTTG-T-----------CATAC---------GATTAGTACATATTAGAGGTTGAATGANCCTGGTATATGACTAATTTGTANA-TGT--G-TCAGT-GGC---CTTT---GAAAC--AC--TGT-CA--G-GA-----AAT-ATGT-TAGAA----ATCAT--ACT----CACCCCCCC-CC-CCC------CTTC-T---TG---CA--GAATT--TN---TGT--ATT-----TTATTTGCATGTCC--ACTA---GNCCAGA-AA-----T-TA-ATC--TNTTTT-CGATT--CAT--T--ACCTT-GTATTTTATTTA-----GC-A---TGA-TTGTAA----T--AATATAT-CT---TCTTGGAAGATC----TC-CCTATTTT----AAAGCTNTT-------CTAAC-AATTC-CTTG-TAAA-A-GTT--GAAAATTGT-CATTAAGGG--------G---TAT-A-CTTGTTAAA-ACTNAAACAGCTNAATTGTTTTTAAAAATTC--CGTTTA--TCGAA-CATTTTCA-GATTTTTTCGCTCTACGTCTCCAAATACATGTACGTCGAAAGTTACATTTTCGGCAGAAAAAAATTAACATTCGTCATAGTTTAAAGTTATTCTGTTTAAATCAATTCTTAATTTATTCAATACTCCATTAATGAGTTACATTGGTGCCCATTTATTAT-ATTAGTCATTCAAAGTATGCATATGTTTTGGTGACTCTACTTGATACTAACAT-TCATTGACTCTCATTAGTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTT--TTGATTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGAATTGTGTTGTTAAAATGCAACGAGAGAGGTA-GGTATGTCTGTACATGGCTTTATTTGGAGTTAAGTATATAACGTTGTGATATAGCTCGTTAAAGA-AGATAAA-AAGATATAGGGGGTAAAACAGAACTTTATT-AAAGTATG
Reference ( gi|2 ) : GAAGTCGTCCAGAAG--CGTTTTATT----------AAGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCTCGA-CAAG--CCCAAGATC---TA----AGAAAGGATGGTTTTCCAAACTGG--------------------TGGCTA-GGGGTATCATATGTAAATGCACTACTAGCCGCTC----TT-A-CACCCCCGTAATATC--GAAAAAAAGCATGAAGAGCTG-AGAAAGAAA-------AAGTCGG-AGGACAT-TTG---TAA-CATTC------AT--TATGTTGT--T-GATTGTGTATT--------AGTATCACTCTCAAGAATA-----TTTCACTC------ATAAGAGGAATGCACCGA-TAC--AT---------GTGAAAGTGG---TTTT-A-----AAAAATCGCACTATATAATCAGCTTCTCT--CTTGAG-CATTTT-AATGT-AAAT-GATTTCTAC-TTACATTACATTAC--CTTATT-----------TATA----------AATTAGTATAT-TTAGAG-TTAC-TGAACT--GTATATGTCTA-CTTGTAAA-TGT--G-TCAGT-GGC---CTTT---GAAA---AC--TGT-CA--GTAA-----AAT-ATGT-TAGAA----ATCAT--ACT----TACCCCCTC-CC-CCC------CTTC-T---TG---AA--GTATT--TC---TGT--ATT-----TTATTTGCATGTCT--ACTA---GACCAGATAAA----TGTA-ATCAATATTTT-CAATT--TATTGT--ACATT-GTATTTTATTGA-----GC-C---TGA-TTGTAA----T--AATATATTCT---TCTTGGAAGATC----TC-CCTATTTT----AAAGCTATT-------CAAAC-AATTC-CTTG-TAAA-A-GTT--GAAAATTGT-CATTAAGGG--------G---TAT-A-CTTGTTAAA-ATTAAAACAGCTCAATTGTTTTTTTAAATTC--CGTTTA--TTGAAACATTTTCA-GATTTTTTC---------TTCCAAA---------ATTGAAAGT-ACATTTTT--CAGAAAAAA-TTAACATTC-TCA--GTT-ACA--TAT-CTGC--AACT--ATTATTAA---A---AATAC------AAAGA--TGCATTG-T-----TTTATTATCATTTATCA--CAAAGTATG-ATGTGTTTTGGTG-CTCTGC---ATAATAAAATATGA--GA---TCATTACTT---------------ATATGTGCT--AAATTTTCATT--TTTGAAAAAAAACGG-TGT--GTGTACTC-CATATCGGATTATGT-GTTAAAATGCAT-------GGTAAGGTATGTCT-TGCATAGTCTTTTTTGG--TTA-GTATATCA-GTTGT--TTTAGCT-ATTACAGAGAAATATATAATAT-TAGGG--TAAA-CAGAACGTTTTTAAAAGTATGGAACTAC
gi|17 : GAAGTCGTCCAGAAG--CGTTTTATT----------
gi|9 : ccacagaaaatAAGTTGTCCAAAAG--CGTTTTATT----------A
gi|7 : ggttaatcggtagtttttcgcctccggttttaattttatagtgcgacctagtatttctgatgaaatttcgccatcgaatgttatcaagattccacagaaaataAGTTGTCCACAAG--CGTTTTATT----------AGGCTAA--CAACG--AAAAATTATTT----AAAGTTTGCCCCGA-CGAG--CCCAAGATCTA-TA----AGAAAGGGCGGTTTTCCAAACg
gi|1 : taaggttaatcggcagtttttcgcctccagttttaattctatagtgcgacctagtatttccggtgaaattttgccatcgaatgttatcaagattccacagaaaatagTTCAGAAGAACGTTT-ATTTTCGCATGTAAAACTAAAGCAACGTGACAAAATACTCTCTGAAAGTTTGCCTCGACCGAGGACCCAAAA-CGAATACGAGAGAAAGGGCGGTTATCCAAAC
gi|8 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcA-CAACG--ACAAATTATTT----AAAGTTTGCCCCAA-CAAG--CCCAAGATC---TA----AGAAAAGACGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGGAAGTGCACTACTAGCCGCTC----TTAA-CATCCCCGcattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|3 : ATGTAAATGCACTACTAGCCGCTA----TT-AACATCCCCGGGATATCAGGGGGAAAAACCTGAATAGCCG-AGAAAGAGA-------A-GTCCG-AGGACATCTTG---CAA-CATTC------AA--TATGNNNN--N-NNNNNNNNNNN--------NNNNNNNNNNNNNNNNNNN-----NNNNNNNN------NNNNNNNNNNNNNNNNNN-NNN--NN---------NNNNNNNNNN---NNNN-NNNNNNAAAACCCGCAC-A-ATAATCAGCCTTTCT--CTTGAG-TATTTTTAATGT-AAAT-GATTTCTAC-TTACATTACATTAC--CTT--------------TATAT---------AATTAGTA---------G-TTGA-TAAACT--GTATATGACTA-TTTGTAAA-TGT--G-TTAGT-GGC---CTTT---GAAG---AC--TGT-CA--G-GA-----AATAATGT-TAGAA----ATCAT--A----------CCCCC-CC-CCC------TTTC-T---TG---CA--GAATT--TC---TGT--ATT-----TTATTTGCATGT-----CTA---GACCAGA----------TA-ATTAATATTTTCCGATTCCTAT--C--ACTTT-GTATTTTATTTA-----GC-A---TGA-TTGTAA----T--TATATA-TCT---TCTTGGAAGATC----TC-CCTATTTT----AAAGCTTTT-------CTAACAAATTC-g
gi|13 : CCACTAGCCGCTCGATCTT-AACATCCCTGGGATAGC--AGAAAAAAGCCTGAAGAGCCA-AGAAAAA
gi|1 : AAGAATGA-GAGCCGCAGAGACAAACTCTGAGAGGTCGGTACGACAT-CTGGTGTAAACACTCCCTCACATAATATGTGATAATAGACTGTGTATTGTTTTCATAGCATC-CTCTCACAAAGACATTTTTTCATTCGCCCATATAAAGGGAA-G-ATCGACTACTCATTCTCGGACAGTGAA-GTGGAGGTTCA-A-----AAAAAACGC--CA-ATAATCAGCTTCTCTAGTTTGAGTCATTTT-AATGTTAAATTGCTTTCTACATTACATTACATTGC----TATTGTGACAGTGTGCATACTAGTTAGAGAGTTAG-ACATATTAGAGGTTAAATGACCCTGGTATATGACTAATTTATAGAGTGT--GGTCAGTTGGCTCCCTTTTGAGAAATATACCTTGT-CA--GGGAGAAGGAA--ATGT-TAGAC----ATCATTTACT----CACCCGCCC-CCACCC------CTTC-TGGTTGCGCAATGATATTGGTTGGGTGT--ATT-----T-ATTTGCATGTTC--A-TA---GCCCAGATAAAATCATGTG-A-----GTTTT-CAATC--CAGTGTTAACCTTAGTTTTTCATTTATTTTAGC-CAACTGAATTGTAAAAACTCAAATATAT-CTATATTGTGGAAGATC----TTGCCTATTTTTTATATAGCTCTTTTTCTTACAAA---ATTC-CTTGATAAATA-GTTT-GAAAAATATTCTTTAAGGGCGTTGGTGG---TGTTATCTTGTTAAATATCTAAACA
gi|11 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccCACTGA-TAC--CA---------GTGAA-GTGG---TTTT-A-----AAAA-TCGCAC-A-ATAATC--------T--GTTAAG-CATTTT-AATGT-AAAT-GACTTTTNC-T---ATCAC-CTACGACTTGGT-----------CATA----------GATCAtagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|15 : CACTGA-TACCAAT---------G---AAGTGG---TTTTTA-----AAAAATCGCAC
gi|16 : ataatgagacgcTAATCAACCTCTCT--CTTGAG-CATTTT-AATGA-AAAT-GATTTa
gi|4 : TGTATA-TGTTTG-TCA-T-GAC---CTTT---GAAAC--AC--TGCACATGACAA-----ACT-TAGTGTATCATTTCATCAT--ACTCATTTACCCCCCCACT-CTCACGTATCTTCAT---TG---CA--GAATT--TG---TGTTGCTTCTCGCTTATCTG--TGTCTCGACTGTGTGGCTCAAGAAC----T-TATCTCCCTCTTTT-CAATT--CATGTT--AC-CT-GTATTTTATCTA-----GCAT---TGA-TT-TAA----T--AATATAT-CT---TTTTGGAAGATC----TT-CTC--TTT----AAAGC-ATTAT-----CTTAC-AATTTTCTTG-TAAA-A-TTTTTGAAA--TGT-C-TTAAGGG--------G---TAT-A-CTTGTTCAA-
gi|12 : ctgtgtgtgagtgtgtgT--ACCTT-GTATTTTATTTA-----GC-A---TGA-TTGCAA----G--AATATAT-CT---TCTTGGAAGATC----TC-CCTATTGT----AAAGCTATT-------CTAAC-AATTC-CTTA-TAAA-A-GTT--GAAAtagaggcatcttgtcgcgtttataagtagattatgaa
gi|5 : TTTATTTA-----GC-A---TGA-TTGTAA----T--GATATAT-CT---TCGTGAAAGATCGATCTC-CCTATTTT----AAAGCTATT-------ATAAC-AATTC-CATG-TAAA-A-GTT--G-AAATTGT-CATTAAGGG--------GGTATAT-A-GGTGTTAAA-ATTtt
gi|6 : A-TTGTAA----T--ATCATAT-CT---TTTTAGAAGATC----TC-CCCATTTTTT--AAAACTTTT-------CCAAC-AATTC-CTTG-TAAA-ATGTG--G--AATTGT-CATTAAGAA--------G---TAT-A-CTTATTAAA-ACTATTACAGgttattttgaaaaatatacatgggcaattaaatatttcttttcacaaaatggtatgtaaagagctcaattgtttttaaaattccgtttgtcgaacattttcagattttttcctccaaatacatgtacgtcgaaagtacatttttcagaaa
gi|14 : TTC-CTTG-TAAA-A-GTT--G-AAATTGT-CATTAA-GT--------G---TAT-A-CGTGTTAAA-ACTgttttgaaaattatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatttgtaaacagctaaaatttttaaaaattccgtttatttaacattttcagatttttct
gi|5 : AAAGAGCTCAATTGTTTTTA-AAATTC--CGTTTG--TCGAA-CATTTTCA-GATTTTTTC---------CTCCAAATACATGTACGTCGAAAGT-ACATTTTT--CAGAAAgttattttgaaaaat
gi|6 : tttatttagcatgattgtaatgatatatcttcgtgaaagatcgatctccctattttaaagctattataacaattccatgtaaaagttgaaattgtcattaagggggtatataggtgttaaaattgttattttgaaaaatatacatgggcaattaaatatttcttttcacaaaatggtatgtAAACAGCTAAA--ATTTTTAAAAATTC--CGTTTA--TTTAA-CATTTTCA-GATTTTT
gi|1 : attgtaatatcatatctttttagaagatctccccattttttaaaacttttccaacaattccttgtaaaatgtggaattgtcattaagaagtatacttattaaaactattacaggttttgaaaattatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatttgtTGGTTTTTAAAATTCTCCGTTTAGGTCGAACAATTGTCATGATTTCCTCGCTCTACGTTTCTAAA---------GTCGAAAGTTATATTTTCGGCAGAAAAAAATTAACATTCGTCATAGTTTAAAGTTATTCTGTTTAAATCAATTCTTAATTTATTCAATACTCCATTAATGAGTTACATTGGTGCCCATTTATTAT-ATTAGTCATTCAAAGTATGCATATGTTTTGGTGACTCTACTTGATACTAACAT-TCATTGACTCTCATTAGTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTT--TTGATTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGAATTGTGTTGTTAAAATGCAACGAGAGAGGTA-GGTATGTCTGTACATGGCTTTATTTGGAGTTAAGTATATAACGTTGTGATATAGCTCGTTAAAGA-AGATAAA-AAGATATAGGGGGTAAAACAGAACTTTATT-AAAGTATGct
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AAAGTATGGAACTACCTTAAGCTGATAATTAAATAAATGTGCCAGTTAAAACTATGTACAGAGTGCTAATAGAATTTTTTTCCCCATTATATATGTATATCATAAGGTATATTGGCTGTCGTGT
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 11 3333333333 11 11 2222 1 11 444444444 66666666666666666666 1 2222 111111 1 55555555 2 22 222 33333333 2222 33333333 2 22222 222222 1111 1 5555555555555 1 111 1 11 1 1111 88888888888888888888888888888 2222 111 333 2 1 22 11 111 111 333333 1 1 22222 1 44444444444 11 2222222 1 1 222222 222 33333333 33333333333 222222222 555555555555555555555555 333333333333 11111 1111111 111 1111 1111 111 11 11 1 11111 111 1111 3333333333333 11 1 1 1 0000000000000000000000000 11 333 1 1 11 1 11 1 11 11 3333333 222222 11 1 22222 2 11 1 1 222 11 2222222 555555555555555 11 11 22 1 11 1 1 33333333 2 1 11 1 1 11 1 2 2 1 11 1 2
lowQualScore : 11 0 5555555555 33 33 1111 0 33 3 222222222 88888888888888888888 5 1 0 1111 3 1 777777 0 11111111 0 1 3 1 77 888 99999999 4 2 5555 55555555 0 2 2 77777 888888 4 5555 0 9999999999999 3 5 777 0 5 0 8 8 0 1 11 8 8 8 8 0 3 3 7777 88888888888888888888888888888 7 5555 6 888 1 111 3 1 0 33 22 777 777 111111 0 0 55555 4 0 2 00000000000 33 1111111 0 0 0 888888 777 66666666 1 11111111111 555555555 1 555555555555555555555555 2 777777777777 88 66666 6 99 6 5 4444444 5 000 2222 5 0 77 2222 555 1 33 5 5 5 33 5 2 6 3 66666 111 4444 6 6 2222222222222 1 5 33 0 0 0 6666666666666666666666666 44 000 5 5 88 5 3 88 5 88 3 88 2 3333333 999999 88 4 5 55555 0 4 88 5 5 111 2 2 88 4444444 2 444444444444444 88 88 2 77 5 88 5 5 55555555 0 5 4 88 5 3 5 88 4 5 3 0 0 4 2 5 77 5 3 4 0
lowQualScore : .. . .......... .. .. .... . .. . ......... .................... . . . .... . . ...... . ........ . . . . .. ... ........ . . .... ........ . . . ..... ...... . .... . ............. . . ... . . . . . . . .. . . . . . . . .... ............................. . .... . ... . ... . . . .. .. ... ... ...... . . ..... . . . ........... .. ....... . . . ...... ... ........ . ........... ......... . ........................ . ............ .. ..... . .. . . ....... . ... .... . . .. .... ... . .. . . . .. . . . . ..... ... .... . . ............. . . .. . . . ......................... .. ... . . .. . . .. . .. . .. . ....... ...... .. . . ..... . . .. . . ... . . .. ....... . ............... .. .. . .. . .. . . ........ . . . .. . . . .. . . . . . . . . .. . . . .
lowQualScore : 00 8 0000000000 22 88 2222 0 88 2 555555555 00000000000000000000 5 0 7 2222 2 0 333333 0 44444444 7 0 7 0 00 555 55555555 0 5 0000 55555555 0 5 5 00000 555555 7 8888 0 0000000000000 2 5 555 0 6 8 0 0 8 4 00 0 0 0 0 0 2 2 8888 88888888888888888888888888888 3 3333 7 333 0 000 7 0 0 88 55 555 555 222222 0 0 00000 0 0 5 55555555555 88 8888888 0 0 2 888888 555 22222222 0 55555555555 555555555 0 000000000000000000000000 0 222222222222 88 77777 7 22 7 7 4444444 7 000 1111 7 1 99 1111 777 0 66 0 7 7 66 7 0 7 5 77777 777 2222 7 7 9999999999999 7 7 88 0 0 0 7777777777777777777777777 77 777 5 0 55 5 0 00 5 55 0 00 5 5555555 555555 00 0 0 55555 0 0 55 0 5 000 5 5 00 5555555 5 000000000000000 00 00 5 55 5 55 0 5 55555555 0 0 0 00 5 0 0 00 0 0 0 0 0 0 5 5 55 5 0 0 0
consensus : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGGAAAAGCCTGAAGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATC-TGGTGTAAACACTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTTGA-TGAACC--GTATATGACTA-TTTGTAAA-TGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ANA-TGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA----GNCCAG--AT-AAT-TNATN--T--N----TTTTCAATTC--A---T--T--ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--AATATAT-CT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-ATTGAAACAGCT-AATTGTTTTTAAAAAT-TCCGTTTA--TCGAA-CA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGTTACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
Reference ( family-2564 ) : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGNAAGTGCACTACTAGCCGCTC----TTAACATCCCCGGGATANCAGGGGGAAAAGCCTGAAGAGCCG-AGAAANAGACTCTGAGAGGTCNGTANGACATCCTGGTGCAAACACTCCCTCACANAATATGTGATAATAGACTGTGTATTGTTTTCATAGCATC-CTCTCACAAAGACATTTTTTCATTCGCCCATATAAAGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACATATTAGAGGTTGAATGANCCTGGTATATGACTAATTTGTANA-TGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ATA-TGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCATGTCCACTA----GNCCAG--A--AAT-TAATC--T--N----TTTTCGATTC--A---T--T--ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--AATATAT-CT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-ACTNAAACAGCTNAATTGTTTTTAAAAAT-TCCGTTTA--TCGAA-CA-TTTTCA-GATTTTTTCGCTCTACGTCTCCAAATACATGTACGTCGAAAGTTACATTTTCGGCAGAAAAAAATTAACATTCGTCATAGTTTAAAGTTATTCTGTTTAAATCAATTCTTAATTTATTCAATACTCCATTAATGAGTTACATTGGTGCCCATTTATTAT-ATTAGTCATTCAAAGTATGCATATGTTTTGGTGACTCTACTTGATACTAACATTCATT-GACTCTCATTAGTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTGA--TTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGAATTGTGTTGTTAAAATGCAACGAGAGAGGT-AGGTATGTCTGTACATGGCTTTATTTGGAGTTAAGTATATAACGTTGTGATATAGCTCGTTAAAGA-AGATA-AAAAGATATAGGGGGTAAAACAGAACTTTATT-AAAGTATG
gi|1 : TTCAGAAGAACGTTT-ATTTTCGCATGTAAAACTAAAGCAACGTGACAAAATACTCTCTGAAAGTTTGCCTCGACCGAGGACCCAAAA-CGAATACGAGAGAAAGGGCGGTTATCCAAAC
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcAGAGCCGCAGAGACAAACTCTGAGAGGTCGGTACGACATC-TGGTGTAAACACTCCCTCACATAATATGTGATAATAGACTGTGTATTGTTTTCATAGCATC-CTCTCACAAAGACATTTTTTCATTCGCCCATATAAAGGGAA-G--ATCGACTACTCATTCTCGGACAGTG-AAGTGGAGGTTCA-AAAAAAACGC-C-A-ATAATCAGCTTCTCTAGTTTGAGTCATTTT-AATGTTAAATTGCTTTCTACATTACATTACATTGC--TATT-GTGACAGTGTGC-ATACTAGTTAGAGAGTTAG-ACATATTAGAGGTTAAATGACCCTGGTATATGACTAATTTATAGAGTGTG-GTCAGTTGGCTCCCTTTTGAGAAATATACCTTGT-CAG-GGAGAAGGAAA-TGTTAG---A--C----ATCATTTACTCA----CCCGCCCC-CACCC------CTTCTGGTTGCGCAATGATATTGGTTGGGT--GTAT-----TTATTTGCATGTTCA-TA----GCCCAGATA--AAA-TCATG--TGAG----TTTTCAATCC--AGTGT--TA-ACCTTAGTTTTTCATTTATTTTAGCCAACT-GAATTGTAAAAACTCAAATATAT-CTATATTGTGGAAGATC----TTGCCTA--TTTTTTATATAGCTCTTTTTCTTACAAAA-TTCCTTGATAAATA--GTTTGAAAAATATTCTTTAAGGGCGTTGG---TGGTGTTATCTTGTTAAATATCTAAACAcattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgGTTTTTAAAATTCTCCGTTTAGGTCGAA-CAATTGTCATGATTTCCTCGCTCTACGTTTCTAAA---------GTCGAAAGTTATATTTTCGGCAGAAAAAAATTAACATTCGTCATAGTTTAAAGTTATTCTGTTTAAATCAATTCTTAATTTATTCAATACTCCATTAATGAGTTACATTGGTGCCCATTTATTAT-ATTAGTCATTCAAAGTATGCATATGTTTTGGTGACTCTACTTGATACTAACATTCATT-GACTCTCATTAGTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTGA--TTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGAATTGTGTTGTTAAAATGCAACGAGAGAGGT-AGGTATGTCTGTACATGGCTTTATTTGGAGTTAAGTATATAACGTTGTGATATAGCTCGTTAAAGA-AGATA-AAAAGATATAGGGGGTAAAACAGAACTTTATT-AAAGTATGtagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|11 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtgC-ACTGA-TAC-CA----------GTGAA-GT---GGTTTT-AAAAA-TCGCAC-A-ATAATC--------T--GTTAAG-CATTTT-AATG-TAAA-TGACTTTTNC-T---ATCAC-CTACGAC-TTGGT---------C-ATA-------GA---TCAa
gi|12 : --T--ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGCAA----G--AATATAT-CT---TCTTGGAAGATC----TC-CCTA--TTG----TAAAGC---TATTCTAAC--AA-TTCCTTA-TAAA-A--G-TTGAAA
gi|13 : CCACTAGCCGCTCGATCTTAACATCCCTGGGATAGCAGAA--AAAAGCCTGAAGAGCCA-AGAAAAAtt
gi|14 : -TTCCTTG-TAAA-A--G-TTG-AAATTG-TCATTAA-G-----TG---TA----TA-CGTGTTAAA-ACTG-----------TTATTTTGAAAAAT-
gi|15 : ATAATGAGAC-GCCACTGA-TAC-CA----------ATGAA-GT---GGTTTTTAAAAAATCGCAC-A-
gi|16 : TAATCAACCTCTCT--CTTGAG-CATTTT-AATG-AAAA-TGATTT
gi|17 : GAAGTCGTCCAGAAG--CGTTTTATT----------
gi|2 : ccacagaaaatGAAGTCGTCCAGAAG--CGTTTTATT----------AAGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCTCGAC-AAG--CCCAAGATC---TA----AGAAAGGATGGTTTTCCAAACTGGT--------------------GGCTA-GGGGTATCATATGTAAATGCACTACTAGCCGCTC----TTA-CACCCCCGTAATATC--GAAAAAAAGCATGAAGAGCTG-AGAAAGAAA-------AAGTCGG-AGGACAT--TTGT---AACATTC--------ATTATGTTGT--T-GATTGTGTATT--------AGTATCACTCTCAAGAATA-----TTTCACTC------ATAAGAGGAATGC-ACCGA-TAC--AT---------GTGAAAGT---GGTTTT-AAAAAATCGCACTATATAATCAGCTTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-AT---------TTATA-------AA---TTAGTATAT-TTAGAG-TT-ACTGAACT--GTATATGTCTA-CTTGTAAA-TGT--GTCAG-TGG---CCTTT---GAAA-A----CTGT-CAGTAAA-----ATA-TGTTAG---A--A----ATCA--TACTTA----CCC-CCTC-CCCCC------CTTC---TTGAAGTAT--------TTCTGT--AT-T-----TTATTTGCATGTCTACTA----GACCAG--ATAAATGTAATCAAT--A----TTTTCAATTT--A---T--TGTACATT-GTATTTTA-----TTGAG-CC--T-G-ATTGTAA----T--AATATATTCT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TATTCAAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-ATTAAAACAGCTCAATTGTTTTTTTAAAT-TCCGTTTA--TTGAAACA-TTTTCA-GATTTTTTC---------TTCCAAA---------ATTGAAAGT-ACATTTTT--CAGAAAA-AATTAACATTC-TC--AG-TTACA--TA-TCTG--CAACT--ATTATTAA---A---AATAC------AA--AGATGCATT-GT-----TTTATTATCATTTATCA--CAAAGTATG-ATGTGTTTTGGTG-CTCTGC---ATAATAAAAT--ATGAGA---TCATTACTT---------------ATATGTGC--TAAA--TTTTCATTTTTGAAAAAAAACGG-TG--TGTGTACTC-CATATCGGATTATG-TGTTAAAATGCA-------TGGTAAGGTATGTCT-TGCATAGTCTTTTTTG--GTT-AGTATATCA-GTTGT--TTTAGCT-ATTACAGAGAAATATATAATAT-TA--GGGT-AAACAGAACGTTTTTAAAAGTATG
gi|3 : ATGTAAATGCACTACTAGCCGCTA----TTAACATCCCCGGGATATCAGGGGGAAAAACCTGAATAGCCG-AGAAA--------GAGAAGTCCG-AGGACATCTTGgaactac
gi|3 : AAAACCCGCAC-A-ATAATCAGCCTTTCT--CTTGAG-TATTTTTAATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT------------T-ATAT------AA---TTAGTA----------GTTGA-TAAACT--GTATATGACTA-TTTGTAAA-TGT--GTTAG-TGG---CCTTT---GAAG-A----CTGT-CAG-GAA-----ATAATGTTAG---A--A----ATCA--TAC-----------CCCC-CCCCC------TTTC---TTGCAGAAT--------TTCTGT--AT-T-----TTATTTGCATGTC---TA----GACCAG--AT-AAT-TAATA--T-------TTTCCGATTCCTA---T--C--ACTTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--TATATAT-CT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TTTTCTAACA-AA-TTCcaacattcaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacccgcacaataatcagcctttctcttgagtatttttaatgtaaatgatttctacttacattacattacctttatataattagtagttgataaactgtatatgactatttgtaaatgtgttagtggcctttgaagactgtcaggaaataatgttagaaatcatacccccccccctttcttgcagaatttctgtattttatttgcatgtctagaccagataattaatattttccgattcctatcactttgtattttatttagcatgattgtaattatatatcttcttggaagatctccctattttaaagcttttctaacaaattc
gi|4 : atgtaaatgcactactagccgctattaacatccccgggatatcagggggaaaaacctgaatagccgagaaagagaagtccgaggacatcttgcaacattcaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGTATA-TGTTTGTCA--TGA---CCTTT---GAAACA----CTGCACAT-GAC-----AAA-C-TTAGTGTATCATTTCATCA--TACTCATTTACCC-CCCCACTCTCACGTATCTTCA--TTGCAGAAT--------TTGTGTTGCT-TCTCGCTTATCTGTGTCTCGACTGTGTGGCTCAA--G--AAC-TTATC--T--CCCTCTTTTCAATTC--A---TGTT--ACCT--GTATTTTA-----TCTAG-CA--TTG-ATT-TAA----T--AATATAT-CT---TTTTGGAAGATC----TT-CT----CTT----TAAAGCA--TTATCTTAC--AATTTTCTTG-TAAA-ATTT-TTGAAA--TG-TC-TTAAGG-----GG---TA----TA-CTTGTTCAA-
gi|5 : ctgtgtgtgagtgtgtgTTTA-----TTTAG-CA--T-G-ATTGTAA----T--GATATAT-CT---TCGTGAAAGATCGATCTC-CCTA--TTT----TAAAGC---TATTATAAC--AA-TTCCATG-TAAA-A--G-TTG-AAATTG-TCATTAAGG-----GGGTATA----TA-GGTGTTAAA-ATTG-----------TTATTTTGAAAAAT-tagaggcatcttgtcgcgtttataagtagattatgaa
gi|5 : AAAGAGCTCAATTGTTTTTAAAA-T-TCCGTTTG--TCGAA-CA-TTTTCA-GATTTTTTC---------CTCCAAATACATGTACGTCGAAAG-TACATTTTT--CAGAAAatacatgggcaattaaatatttcttttcacaaaatggtatgtaaagagctcaattgtttttaaaattccgtttgtcgaacattttcagattttttcctccaaatacatgtacgtcgaaagtacatttttcagaaa
gi|6 : tttatttagcatgattgtaatgatatatcttcgtgaaagatcgatctccctattttaaagctattataacaattccatgtaaaagttgaaattgtcattaagggggtatataggtgttaaaattgttattttgaaaaatatacatgggcaattaaatatttcttttcacaaaatggtatgt-ATTGTAA----T--ATCATAT-CT---TTTTAGAAGATC----TC-CCCATTTTT----TAAAAC---TTTTCCAAC--AA-TTCCTTG-TAAA-AT-G-TGG--AATTG-TCATTAAGA-----AG---TA----TA-CTTATTAAA-ACTATTACAG-------G-TTTTGAAAAT-T
gi|6 : AAACAGCTAAA--ATTTTTAAAAAT-TCCGTTTA--TTTAA-CA-TTTTCA-GATTTTTatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatttgtaaacagctaaaatttttaaaaattccgtttatttaacattttcagatttttct
gi|7 : attgtaatatcatatctttttagaagatctccccattttttaaaacttttccaacaattccttgtaaaatgtggaattgtcattaagaagtatacttattaaaactattacaggttttgaaaattatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatttgtAGTTGTCCACAAG--CGTTTTATT----------AGGCTAA--CAACG--AAAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATCT-ATA----AGAAAGGGCGGTTTTCCAAACct
gi|8 : taaggttaatcggcagtttttcgcctccagttttaattctatagtgcgacctagtatttccggtgaaattttgccatcgaatgttatcaagattccacagaaaatagA-CAACG--ACAAATTATTT----AAAGTTTGCCCCAAC-AAG--CCCAAGATC---TA----AGAAAAGACGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGGAAGTGCACTACTAGCCGCTC----TTAACATCCCCGG
gi|9 : AAGTTGTCCAAAAG--CGTTTTATT----------AG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTATGGAACTACCTTAAGCTGATAATTAAATAAATGTGCCAGTTAAAACTATGTACAGAGTGCTAATAGAATTTTTTTCCCCATTATATATGTATATCATAAGGTATATTGGCTGTCGTGT
Alignments
lowQualScore : 11 3333333333 11 11 2222 1 11 444444444 66666666666666666666 1 2222 11 22222 1 33333 1 222222 33333333 2222 33333333 1 22222 222222 1111 1 5555555555555 1 111 1 11 1 1111 88888888888888888888888888888 2222 11 111 1 111 1 22 11 111 111 333333 1 1 22222 1 44444444444 11 222222 1 1 222222 222 33333333 33333333333 11111111 2 11 555555555 44444444444 11111 11 1111111 111 1111 1111 111 11 11 1 11111 111 1111 55555555555555555555555555555555 11 1 1 1 555555555 555555555 2 11 1 11 1 11 1 11 11 3333333 222222 11 1 22222 1 11 1 1 222 11 11 222 555555555555555 11 11 11 1 11 1 1 33333333 1 1 11 1 1 11 1 1 1 1 11 1 1
lowQualScore : 11 0 5555555555 33 33 1111 0 33 3 222222222 88888888888888888888 5 1111 3 7 00 55555 0 5555 55555 3 222222 7 0 44444444 1 1 5555 55555555 5 2 1 77777 888888 1 5555 0 9999999999999 3 5 777 0 5 0 8 8 0 1 11 8 8 8 8 0 3 3 7777 88888888888888888888888888888 7 3333 6 44 555 0 111 0 33 22 777 777 111111 0 0 55555 1 0 2 00000000000 33 444444 0 0 0 888888 777 66666666 1 11111111111 2 99999999 1 0 11 1 111111111 00000000000 0 8 66666 6 55 5 4444444 5 000 2222 5 0 2222 77 555 1 33 5 5 5 33 5 2 6 3 66666 111 2222 5 5 55555555555555555555555555555555 2 5 33 0 0 0 333333333 333333333 3 88 7 5 88 5 1 88 5 88 1 88 1 3333333 999999 88 1 5 55555 5 1 88 5 5 111 1 1 88 66 000 1 444444444444444 88 88 1 88 5 88 5 5 22222222 5 5 1 88 5 1 5 88 1 5 1 5 5 1 1 5 77 5 1 1 5
lowQualScore : .. . .......... .. .. .... . .. . ......... .................... . .... . . .. ..... . .... ..... . ...... . . ........ . . .... ........ . . . ..... ...... . .... . ............. . . ... . . . . . . . .. . . . . . . . .... ............................. . .... . .. ... . ... . .. .. ... ... ...... . . ..... . . . ........... .. ...... . . . ...... ... ........ . ........... . ........ . . .. . ......... ........... . . ..... . .. . ....... . ... .... . . .... .. ... . .. . . . .. . . . . ..... ... .... . . ................................ . . .. . . . ......... ......... . .. . . .. . . .. . .. . .. . ....... ...... .. . . ..... . . .. . . ... . . .. .. ... . ............... .. .. . .. . .. . . ........ . . . .. . . . .. . . . . . . . . .. . . . .
lowQualScore : 00 8 0000000000 22 88 2222 0 88 2 555555555 00000000000000000000 5 2222 2 3 88 00000 0 5555 00000 3 333333 3 7 55555555 0 0 0000 55555555 5 5 0 00000 555555 0 8888 0 0000000000000 2 5 555 0 6 8 0 0 8 4 00 0 0 0 0 0 2 2 8888 88888888888888888888888888888 3 3333 7 00 888 0 000 0 88 55 555 555 222222 0 0 00000 0 0 5 55555555555 88 888888 0 0 2 888888 555 22222222 0 55555555555 0 88888888 0 0 22 0 555555555 00000000000 8 0 77777 7 88 7 4444444 7 000 1111 7 1 1111 99 777 0 66 0 7 7 66 7 0 7 5 77777 777 1111 7 7 11111111111111111111111111111111 2 0 88 0 0 0 333333333 333333333 7 33 3 0 55 5 0 00 5 55 0 00 0 5555555 555555 00 0 0 55555 0 0 55 0 5 000 0 0 00 55 555 0 000000000000000 00 00 0 55 5 55 0 5 55555555 5 0 0 00 5 0 0 00 0 0 0 0 5 0 0 5 55 5 0 0 5
consensus : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGAAAAAGCCCGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTG-TGTAAACATTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-AATGAACT--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ANA-TGTTAG---A--A----ATCA--TACTC----ACCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GACCAGATAAAT-TNATC---AT--NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--TG-ATTGTAA----T--AATATA-TCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TG-AAACAG-CT-AA--------TTGTTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAG-TACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
Reference ( family-2564 ) : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGGAAAAGCCTGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTGGTGTAAACACTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-GATGAACC--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ANA-TGTTAG---A--A----ATCA--TACTC----ACCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GNCCAGAT-AAT-TNAT----NT--NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--TG-ATTGTAA----T--AATATA-TCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TG-AAACAG-CT-AA--------TTGTTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGTTACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
gi|1 : TTCAGAAGAACGTTT-ATTTTCGCATGTAAAACTAAAGCAACGTGACAAAATACTCTCTGAAAGTTTGCCTCGACCGAGGACCCAAAA-CGAATACGAGAGAAAGGGCGGTTATCCAAAC
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcAGAAGAGGCCCAAGAATGAGAGCCGCAGAGACAAACTCTGAGAGGTCGGTACGACATCTGGTGTAAACACTCCCTCACATAATATGTGATAATAGACTGTGTATTGTTTTCATAGCATC-CTCTCACAAAGACATTTTTTCATTCGCCCATATAAAGGGAA-G--ATCGACTACTCATTCTCGGACAGTG-AAGTGGAGGTTCA-AAAAAAACGC-C-A-ATAATCAGCTTCTCTAGTTTGAGTCATTTT-AATGTTAAATTGCTTTCTACATTACATTACATTGC--TATT-GTGACAGTGTGC-ATACTAGTTAGAGAGTTAG-ACATATTAGAGGTTAAATGACCCTGGTATATGACTAAT-T-TATAGAGTGTG-GTCAGTTGGCTCCCTTTTGAGAAATATACCTTGT-CAG-GGAGAAGGAAA-TGTTAG---A--C----ATCATTTACTC----ACCCGCCCC-CACCC------CTTCTGGTTGCGCAATGATATTGGTTGGGT--GTAT-----TTATTTGCATGTTCA-TA---GCCCAGATAAAA-TCAT----GTGAGTTTTCAATCC--AGTGT--TAACCTTAGTTTTTCATTTATTTTAGCCAACTGAATTGTAAAAACTCAAATATA-TCTATATTGTGGAAGATC----TTGCCTATTTTTTAT--ATAGCTCTTTTTCTTACAAAA-TTCCTTGATAAATA--GTTTGAAAAATATTCTTTAAGGGCGTTGG---TGGTGTTATCTTGTTAAATA-----T-CT-AAACAcattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaaca----TA-TTTTTTAAA-AAATGGTATGTAAACAGGCT-AACAAAGGTGTGGTTTTTAAAATTCTCCGTTTAGGTCG-AACAATTGTCATGATTTCCTCGCTCTACGTTTCTAAA---------GTCGAAAGTTATATTTTCGGCAGAAAAAAATTAACATTCGTCATAGTTTAAAGTTATTCTGTTTAAATCAATTCTTAATTTATTCAATACTCCATTAATGAGTTACATTGGTGCCCATTTATTAT-ATTAGTCATTCAAAGTATGCATATGTTTTGGTGACTCTACTTGATACTAACATTCATT-GACTCTCATTAGTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTGA--TTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGAATTGTGTTGTTAAAATGCAACGAGAGAGGT-AGGTATGTCTGTACATGGCTTTATTTGGAGTTAAGTATATAACGTTGTGATATAGCTCGTTAAAGA-AGATA-AAAAGATATAGGGGGTAAAACAGAACTTTATT-AAAGTATGtagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|11 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattcctC-ACTGA-TAC-CA----------GTGAA-GT---GGTTTT-AAAAA-TCGCAC-A-ATAATC--------T--GTTAAG-CATTTT-AATG-TAAA-TGACTTTTNC-T---ATCAC-CTACGAC-TTGGT---------C-ATA-------GA---TCAa
gi|12 : --T-ACCTT-GTATTTTA-----TTTAG-CA--TG-ATTGCAA----G--AATATA-TCT---TCTTGGAAGATC----TC-CCTATTG----T--AAAGC---TATTCTAAC--AA-TTCCTTA-TAAA-A--G-TTGAAA
gi|13 : CCACTAGCCGCTCGATCTTAACATCCCTGGGATAGCAGAA--AAAAGCCTGA-----AGAGCCA-AGAAAAAtt
gi|14 : -TTCCTTG-TAAA-A--G-TTG-AAATTG-TCATTAA-G-----TG---TA----TA-CGTGTTAAA-A-----C-TG---------------------TTATTTTGAAAAAT-
gi|15 : ATAATGAGAC-GCCACTGA-TAC-CA----------ATGAA-GT---GGTTTTTAAAAAATCGCAC-A-
gi|16 : TAATCAACCTCTCT--CTTGAG-CATTTT-AATG-AAAA-TGATTT
gi|17 : GAAGTCGTCCAGAAG--CGTTTTATT----------
gi|2 : ccacagaaaatGAAGTCGTCCAGAAG--CGTTTTATT----------AAGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCTCGAC-AAG--CCCAAGATC---TA----AGAAAGGATGGTTTTCCAAACTGGT--------------------GGCTA-GGGGTATCATATGTAAATGCACTACTAGCCGCTC----TTA-CACCCCCGTAATATC--GAAAAAAAGCATGA-----AGAGCTG-AGAAAGAAA-------AAGTCGG-AGGACATTTG---TAA-CATTC--------ATTATGTTGT--T-GATTGTGTATT--------AGTATCACTCTCAAGAATA-----TTTCACTC------ATAAGAGGAATGC-ACCGA-TAC--AT---------GTGAAAGT---GGTTTT-AAAAAATCGCACTATATAATCAGCTTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-AT---------TTATA-------AA---TTAGTATAT-TTAGAG-TT-ACTGAACT--GTATATGTCT-AC-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAA-A----CTGT-CAGTAAA-----ATA-TGTTAG---A--A----ATCA--TACTT----ACCC-CCTC-CCCCC------CTTC---TTGAAGTAT--------TTCTGT--AT-T-----TTATTTGCATGTCTACTA---GACCAGATAAATGTAATCA--AT--ATTTTCAATTT--A---TTGT-ACATT-GTATTTTA-----TTGAG-CC--TG-ATTGTAA----T--AATATATTCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TATTCAAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TA-AAACAG-CTCAA--------TTGTTTTTTTAAAT-TCCGTTTA--TTGAAACA-TTTTCA-GATTTTTTC---------TTCCAAA---------ATTGAAAG-TACATTTTT--CAG-AAAAAATTAACATTC-TC--AG-TTACA--TA-TCTG--CAACT--ATTATTAA---A---AATAC------AA--AGATGCATT-GT-----TTTATTATCATTTATCA--CAAAGTATG-ATGTGTTTTGGTG-CTCTGC---ATAATAAAAT--ATGAGA---TCATTACTT---------------ATATGTGC--TAAA--TTTTCATTTTTGAAAAAAAACGG-TG--TGTGTACTC-CATATCGGATTATG-TGTTAAAATGCA-------TGGTAAGGTATGTCT-TGCATAGTCTTTTTTG--GTT-AGTATATCA-GTTGT--TTTAGCT-ATTACAGAGAAATATATAATAT-TA--GGGT-AAACAGAACGTTTTTAAAAGTATG
gi|3 : ATGTAAATGCACTACTAGCCGCTA----TTAACATCCCCGGGATATCAGGGGGAAAAACCTGA-----ATAGCCG-AG----AAA----GAGAAGTCCG-AGGACATCT--TGC-AACATTCgaactac
gi|3 : AAAACCCGCAC-A-ATAATCAGCCTTTCT--CTTGAG-TATTTTTAATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT------------T-ATAT------AA---TTAGTA----------GTT-GATAAACT--GTATATGACT-AT-T-TGTA-AATGT--GTTAG-TGG---CCTTT---GAAG-A----CTGT-CAG-GAA-----ATAATGTTAG---A--A----ATCA--TAC-----------CCCC-CCCCC------TTTC---TTGCAGAAT--------TTCTGT--AT-T-----TTATTTGCATGTC---TA---GACCAGAT-AAT-TAAT----AT---TTTCCGATTCCTA---T--C-ACTTT-GTATTTTA-----TTTAG-CA--TG-ATTGTAA----T--TATATA-TCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TTTTCTAACA-AA-TTCaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacccgcacaataatcagcctttctcttgagtatttttaatgtaaatgatttctacttacattacattacctttatataattagtagttgataaactgtatatgactatttgtaaatgtgttagtggcctttgaagactgtcaggaaataatgttagaaatcatacccccccccctttcttgcagaatttctgtattttatttgcatgtctagaccagataattaatattttccgattcctatcactttgtattttatttagcatgattgtaattatatatcttcttggaagatctccctattttaaagcttttctaacaaattc
gi|4 : atgtaaatgcactactagccgctattaacatccccgggatatcagggggaaaaacctgaatagccgagaaagagaagtccgaggacatcttgcaacattcaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT--GTGTGTGAGT-GTGTGTGTA-TATGTTTGTCA--TGA---CCTTT---GAAACA----CTGCACAT-GAC-----AAA-C-TTAGTGTATCATTTCATCA--TACTCATTTACCC-CCCCACTCTCACGTATCTTCA--TTGCAGAAT--------TTGTGTTGCT-TCTCGCTTATCTGTGTCTCGACTGTGTGGCTCAAG-AAC-TTATCTCCCT--CTTTTCAATTC--ATG-T--T-ACC-T-GTATTTTA-----TCTAG-CAT-TG-ATT-TAA----T--AATATA-TCT---TTTTGGAAGATC----TT-CT--CTT----T--AAAGCA--TTATCTTAC--AATTTTCTTG-TAAA-ATTT-TTGAAA--TG-TC-TTAAGG-----GG---TA----TA-CTTGTT-CA-A-----T-AG-AGGCAT-CT-TG--------TCGCGTTTATAAGT-
gi|5 : TTTA-----TTTAG-CA--TG-ATTGTAA----T--GATATA-TCT---TCGTGAAAGATCGATCTC-CCTATTT----T--AAAGC---TATTATAAC--AA-TTCCATG-TAAA-A--G-TTG-AAATTG-TCATTAAGG-----GGGTATA----TA-GGTGTTAAA-A-----T-TG---------------------TTATTTTGAAAAAT-agattatgaa
gi|5 : -AAAGAG-CTCAA--------TTGTTTTTAAAA-T-TCCGTTTG--TCG-AACA-TTTTCA-GATTTTTTC---------CTCCAAATACATGTACGTCGAAAG-TACATTTTT--CAGAAAatacatgggcaattaaatatttcttttcacaaaatggtatgtaaagagctcaattgtttttaaaattccgtttgtcgaacattttcagattttttcctccaaatacatgtacgtcgaaagtacatttttcagaaa
gi|6 : tttatttagcatgattgtaatgatatatcttcgtgaaagatcgatctccctattttaaagctattataacaattccatgtaaaagttgaaattgtcattaagggggtatataggtgttaaaattgttattttgaaaaatatacatgggcaattaaatatttcttttcacaaaatggtatgt-ATTGTAA----T--ATCATA-TCT---TTTTAGAAGATC----TC-CCCATTT----TTTAAAAC---TTTTCCAAC--AA-TTCCTTG-TAAA-AT-G-TGG--AATTG-TCATTAAGA-----AG---TA----TA-CTTATTAAA-A-----C-TA-TTACAG----------------G-TTTTGAAAAT-T
gi|6 : -----T-TGTAAACAG-CT-AA--------A-ATTTTTAAAAAT-TCCGTTTA--TTT-AACA-TTTTCA-GATTTTTatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatttgtaaacagctaaaatttttaaaaattccgtttatttaacattttcagatttttct
gi|7 : attgtaatatcatatctttttagaagatctccccattttttaaaacttttccaacaattccttgtaaaatgtggaattgtcattaagaagtatacttattaaaactattacaggttttgaaaattatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatAGTTGTCCACAAG--CGTTTTATT----------AGGCTAA--CAACG--AAAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATCT-ATA----AGAAAGGGCGGTTTTCCAAACct
gi|8 : taaggttaatcggcagtttttcgcctccagttttaattctatagtgcgacctagtatttccggtgaaattttgccatcgaatgttatcaagattccacagaaaatagA-CAACG--ACAAATTATTT----AAAGTTTGCCCCAAC-AAG--CCCAAGATC---TA----AGAAAAGACGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGGAAGTGCACTACTAGCCGCTC----TTAACATCCCCGG
gi|9 : AAGTTGTCCAAAAG--CGTTTTATT----------AG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTATGGAACTACCTTAAGCTGATAATTAAATAAATGTGCCAGTTAAAACTATGTACAGAGTGCTAATAGAATTTTTTTCCCCATTATATATGTATATCATAAGGTATATTGGCTGTCGTGT
Alignments
lowQualScore : 11 3333333333 11 11 2222 1 11 444444444 66666666666666666666 1 2222 1111 22222 1 33333 1 333333 33333333 2222 33333333 1 22222 222222 1111 1 5555555555555 1 111 1 11 1 1111 88888888888888888888888888888 2222 1 11 1 111 1 22 11 111 111 333333 1 1 22222 1 44444444444 11 2222222 1 1 222222 222 33333333 33333333333 11111111 1 555555555555555555 33333333333 11111 1111111 111 1111 1111 111 11 11 1 11111 111 1111 55555555555555555555555555555555 11 1 1 1 555555555 555555555 1 11 1 11 1 11 1 11 11 3333333 222222 11 1 22222 1 11 1 1 222 11 11 222 555555555555555 11 11 11 1 11 1 1 33333333 1 1 11 1 1 11 1 1 1 1 11 1 1
lowQualScore : 11 0 5555555555 33 33 1111 0 33 3 222222222 88888888888888888888 5 1111 3 3333 2 55555 0 5555 55555 3 777777 44444444 1 1 5555 55555555 5 2 1 77777 888888 1 5555 0 9999999999999 3 5 777 0 5 0 8 8 0 1 11 8 8 8 8 0 3 3 7777 88888888888888888888888888888 7 3333 6 3 33 0 111 0 33 22 777 777 111111 0 0 55555 1 0 2 00000000000 33 1111111 0 0 0 888888 777 66666666 1 11111111111 2 99999999 0 0 3 333333333333333333 77777777777 88 66666 6 99 6 5 4444444 5 000 2222 5 0 77 2222 555 1 33 5 5 5 33 5 2 6 3 66666 111 2222 5 5 55555555555555555555555555555555 2 5 33 0 0 0 333333333 333333333 3 88 7 5 88 5 1 88 5 88 1 88 1 3333333 999999 88 1 5 55555 5 1 88 5 5 111 1 1 88 66 000 1 444444444444444 88 88 1 88 5 88 5 5 22222222 5 5 1 88 5 1 5 88 1 5 1 5 5 1 1 5 77 5 1 1 5
lowQualScore : .. . .......... .. .. .... . .. . ......... .................... . .... . .... . ..... . .... ..... . ...... ........ . . .... ........ . . . ..... ...... . .... . ............. . . ... . . . . . . . .. . . . . . . . .... ............................. . .... . . .. . ... . .. .. ... ... ...... . . ..... . . . ........... .. ....... . . . ...... ... ........ . ........... . ........ . . . .................. ........... .. ..... . .. . . ....... . ... .... . . .. .... ... . .. . . . .. . . . . ..... ... .... . . ................................ . . .. . . . ......... ......... . .. . . .. . . .. . .. . .. . ....... ...... .. . . ..... . . .. . . ... . . .. .. ... . ............... .. .. . .. . .. . . ........ . . . .. . . . .. . . . . . . . . .. . . . .
lowQualScore : 00 8 0000000000 22 88 2222 0 88 2 555555555 00000000000000000000 5 2222 2 1111 0 00000 0 5555 00000 3 000000 55555555 0 0 0000 55555555 5 5 0 00000 555555 0 8888 0 0000000000000 2 5 555 0 6 8 0 0 8 4 00 0 0 0 0 0 2 2 8888 88888888888888888888888888888 3 3333 7 3 88 0 000 0 88 55 555 555 222222 0 0 00000 0 0 5 55555555555 88 8888888 0 0 2 888888 555 22222222 0 55555555555 0 88888888 8 0 2 888888888888888888 22222222222 88 77777 7 22 7 7 4444444 7 000 1111 7 1 99 1111 777 0 66 0 7 7 66 7 0 7 5 77777 777 1111 7 7 11111111111111111111111111111111 2 0 88 0 0 0 333333333 333333333 3 33 3 0 55 5 0 00 5 55 0 00 0 5555555 555555 00 0 0 55555 0 0 55 0 5 000 0 0 00 55 555 0 000000000000000 00 00 0 55 5 55 0 5 55555555 5 0 0 00 5 0 0 00 0 0 0 0 5 0 0 5 55 5 0 0 5
consensus : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGAAAAAGCCCGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTG-TGC-AACATTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-AATGAACT--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ANA-TGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GAC-CAGATAAAT-TAATC---AT----NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--AATATA-TCT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TG-AAACAG-CT-AA--------TTGTTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGT-ACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
Reference ( family-2564 ) : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGAAAAAGCCCGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTG-TGTAAACATTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-AATGAACT--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ANA-TGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GAC-CAGATAAAT-TNATC---AT----NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--AATATA-TCT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TG-AAACAG-CT-AA--------TTGTTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGT-ACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
gi|1 : TTCAGAAGAACGTTT-ATTTTCGCATGTAAAACTAAAGCAACGTGACAAAATACTCTCTGAAAGTTTGCCTCGACCGAGGACCCAAAA-CGAATACGAGAGAAAGGGCGGTTATCCAAAC
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcAGAAGAGGCCCAAGAATGAGAGCCGCAGAGACAAACTCTGAGAGGTCGGTACGACATCTGGTGTAAACACTCCCTCACATAATATGTGATAATAGACTGTGTATTGTTTTCATAGCATC-CTCTCACAAAGACATTTTTTCATTCGCCCATATAAAGGGAA-G--ATCGACTACTCATTCTCGGACAGTG-AAGTGGAGGTTCA-AAAAAAACGC-C-A-ATAATCAGCTTCTCTAGTTTGAGTCATTTT-AATGTTAAATTGCTTTCTACATTACATTACATTGC--TATT-GTGACAGTGTGC-ATACTAGTTAGAGAGTTAG-ACATATTAGAGGTTAAATGACCCTGGTATATGACTAAT-T-TATAGAGTGTG-GTCAGTTGGCTCCCTTTTGAGAAATATACCTTGT-CAG-GGAGAAGGAAA-TGTTAG---A--C----ATCATTTACTCA----CCCGCCCC-CACCC------CTTCTGGTTGCGCAATGATATTGGTTGGGT--GTAT-----TTATTTGCATGTTCA-TA---GCC-CAGATAAA----ATC---ATGTGAGTTTTCAATCC--AGTGT--TAACCTTAGTTTTTCATTTATTTTAGCCAACT-GAATTGTAAAAACTCAAATATA-TCTATATTGTGGAAGATC----TTGCCTA--TTTTTTATATAGCTCTTTTTCTTACAAAA-TTCCTTGATAAATA--GTTTGAAAAATATTCTTTAAGGGCGTTGG---TGGTGTTATCTTGTTAAATA-----T-CT-AAACAcattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaaca----TA-TTTTTTAAA-AAATGGTATGTAAACAGGCT-AACAAAGGTGTGGTTTTTAAAATTCTCCGTTTAGGTCG-AACAATTGTCATGATTTCCTCGCTCTACGTTTCTAAA---------GTCGAAAGTTATATTTTCGGCAGAAAAAAATTAACATTCGTCATAGTTTAAAGTTATTCTGTTTAAATCAATTCTTAATTTATTCAATACTCCATTAATGAGTTACATTGGTGCCCATTTATTAT-ATTAGTCATTCAAAGTATGCATATGTTTTGGTGACTCTACTTGATACTAACATTCATT-GACTCTCATTAGTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTGA--TTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGAATTGTGTTGTTAAAATGCAACGAGAGAGGT-AGGTATGTCTGTACATGGCTTTATTTGGAGTTAAGTATATAACGTTGTGATATAGCTCGTTAAAGA-AGATA-AAAAGATATAGGGGGTAAAACAGAACTTTATT-AAAGTATGtagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|11 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattcctC-ACTGA-TAC-CA----------GTGAA-GT---GGTTTT-AAAAA-TCGCAC-A-ATAATC--------T--GTTAAG-CATTTT-AATG-TAAA-TGACTTTTNC-T---ATCAC-CTACGAC-TTGGT---------C-ATA-------GA---TCAa
gi|12 : --T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGCAA----G--AATATA-TCT---TCTTGGAAGATC----TC-CCTA--TTG----TAAAGC---TATTCTAAC--AA-TTCCTTA-TAAA-A--G-TTGAAA
gi|13 : CCACTAGCCGCTCGATCTTAACATCCCTGGGATAGCAG--AAAAAAGCCTGA-----AGAGCCA-AGAAAAAtt
gi|14 : -TTCCTTG-TAAA-A--G-TTG-AAATTG-TCATTAA-G-----TG---TA----TA-CGTGTTAAA-A-----C-TG---------------------TTATTTTGAAAAAT-
gi|15 : ATAATGAGAC-GCCACTGA-TAC-CA----------ATGAA-GT---GGTTTTTAAAAAATCGCAC-A-
gi|16 : TAATCAACCTCTCT--CTTGAG-CATTTT-AATG-AAAA-TGATTT
gi|17 : GAAGTCGTCCAGAAG--CGTTTTATT----------
gi|2 : ccacagaaaatGAAGTCGTCCAGAAG--CGTTTTATT----------AAGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCTCGAC-AAG--CCCAAGATC---TA----AGAAAGGATGGTTTTCCAAACTGGT--------------------GGCTA-GGGGTATCATATGTAAATGCACTACTAGCCGCTC----TTA-CACCCCCGTAATATC--GAAAAAAAGCATGA-----AGAGCTG-AGAAAGAAA-------AAGTCGG-AGGACATTTG-T---AACATTC--------ATTATGTTGT--T-GATTGTGTATT--------AGTATCACTCTCAAGAATA-----TTTCACTC------ATAAGAGGAATGC-ACCGA-TAC--AT---------GTGAAAGT---GGTTTT-AAAAAATCGCACTATATAATCAGCTTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-AT---------TTATA-------AA---TTAGTATAT-TTAGAG-TT-ACTGAACT--GTATATGTCT-AC-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAA-A----CTGT-CAGTAAA-----ATA-TGTTAG---A--A----ATCA--TACTTA----CCC-CCTC-CCCCC------CTTC---TTGAAGTAT--------TTCTGT--AT-T-----TTATTTGCATGTCTACTA---GAC-CAGATAAATGTAATCA--AT----ATTTTCAATTT--A---TTGT-ACATT-GTATTTTA-----TTGAG-CC--T-G-ATTGTAA----T--AATATATTCT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TATTCAAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TA-AAACAG-CTCAA--------TTGTTTTTTTAAAT-TCCGTTTA--TTGAAACA-TTTTCA-GATTTTTTC---------TTCCAAA---------ATTGAAAGT-ACATTTTT--CAG-AAAAAATTAACATTC-TC--AG-TTACA--TA-TCTG--CAACT--ATTATTAA---A---AATAC------AA--AGATGCATT-GT-----TTTATTATCATTTATCA--CAAAGTATG-ATGTGTTTTGGTG-CTCTGC---ATAATAAAAT--ATGAGA---TCATTACTT---------------ATATGTGC--TAAA--TTTTCATTTTTGAAAAAAAACGG-TG--TGTGTACTC-CATATCGGATTATG-TGTTAAAATGCA-------TGGTAAGGTATGTCT-TGCATAGTCTTTTTTG--GTT-AGTATATCA-GTTGT--TTTAGCT-ATTACAGAGAAATATATAATAT-TA--GGGT-AAACAGAACGTTTTTAAAAGTATG
gi|3 : ATGTAAATGCACTACTAGCCGCTA----TTAACATCCCCGGGATATCAGGGGGAAAAACCTGA-----ATAGCCG-AG----AAA----GAGAAGTCCG-AGGACATCT--TGC-AACATTCgaactac
gi|3 : AAAACCCGCAC-A-ATAATCAGCCTTTCT--CTTGAG-TATTTTTAATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT------------T-ATAT------AA---TTAGTA----------GTT-GATAAACT--GTATATGACT-AT-T-TGTA-AATGT--GTTAG-TGG---CCTTT---GAAG-A----CTGT-CAG-GAA-----ATAATGTTAG---A--A----ATCA--TAC-----------CCCC-CCCCC------TTTC---TTGCAGAAT--------TTCTGT--AT-T-----TTATTTGCATGTC---TA---GAC-CAGATAA-T-TAAT----AT-----TTTCCGATTCCTA---T--C-ACTTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--TATATA-TCT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TTTTCTAACA-AA-TTCaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacccgcacaataatcagcctttctcttgagtatttttaatgtaaatgatttctacttacattacattacctttatataattagtagttgataaactgtatatgactatttgtaaatgtgttagtggcctttgaagactgtcaggaaataatgttagaaatcatacccccccccctttcttgcagaatttctgtattttatttgcatgtctagaccagataattaatattttccgattcctatcactttgtattttatttagcatgattgtaattatatatcttcttggaagatctccctattttaaagcttttctaacaaattc
gi|4 : atgtaaatgcactactagccgctattaacatccccgggatatcagggggaaaaacctgaatagccgagaaagagaagtccgaggacatcttgcaacattcaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT--GTGTGTGAGT-GTGTGTGTA-TATGTTTGTCA--TGA---CCTTT---GAAACA----CTGCACAT-GAC-----AAA-C-TTAGTGTATCATTTCATCA--TACTCATTTACCC-CCCCACTCTCACGTATCTTCA--TTGCAGAAT--------TTGTGTTGCT-TCTCGCTTATCTGTGTCTCGACTGTGTGGCTCAAG--AAC-TTATCTCCCT----CTTTTCAATTC--A---TGTT-ACCT--GTATTTTA-----TCTAG-CA--TTG-ATT-TAA----T--AATATA-TCT---TTTTGGAAGATC----TT-CT----CTT----TAAAGCA--TTATCTTAC--AATTTTCTTG-TAAA-ATTT-TTGAAA--TG-TC-TTAAGG-----GG---TA----TA-CTTGTT-CA-A-----T-AG-AGGCAT-CT-TG--------TCGCGTTTATAAGT-
gi|5 : TTTA-----TTTAG-CA--T-G-ATTGTAA----T--GATATA-TCT---TCGTGAAAGATCGATCTC-CCTA--TTT----TAAAGC---TATTATAAC--AA-TTCCATG-TAAA-A--G-TTG-AAATTG-TCATTAAGG-----GGGTATA----TA-GGTGTTAAA-A-----T-TG---------------------TTATTTTGAAAAAT-agattatgaa
gi|5 : -AAAGAG-CTCAA--------TTGTTTTTAAAA-T-TCCGTTTG--TCG-AACA-TTTTCA-GATTTTTTC---------CTCCAAATACATGTACGTCGAAAGT-ACATTTTT--CAGAAAatacatgggcaattaaatatttcttttcacaaaatggtatgtaaagagctcaattgtttttaaaattccgtttgtcgaacattttcagattttttcctccaaatacatgtacgtcgaaagtacatttttcagaaa
gi|6 : tttatttagcatgattgtaatgatatatcttcgtgaaagatcgatctccctattttaaagctattataacaattccatgtaaaagttgaaattgtcattaagggggtatataggtgttaaaattgttattttgaaaaatatacatgggcaattaaatatttcttttcacaaaatggtatgt-ATTGTAA----T--ATCATA-TCT---TTTTAGAAGATC----TC-CCCATTTTT----TAAAAC---TTTTCCAAC--AA-TTCCTTG-TAAA-AT-G-TGG--AATTG-TCATTAAGA-----AG---TA----TA-CTTATTAAA-A-----C-TA-TTACAG----------------G-TTTTGAAAAT-T
gi|6 : -----T-TGTAAACAG-CT-AA--------A-ATTTTTAAAAAT-TCCGTTTA--TTT-AACA-TTTTCA-GATTTTTatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatttgtaaacagctaaaatttttaaaaattccgtttatttaacattttcagatttttct
gi|7 : attgtaatatcatatctttttagaagatctccccattttttaaaacttttccaacaattccttgtaaaatgtggaattgtcattaagaagtatacttattaaaactattacaggttttgaaaattatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatAGTTGTCCACAAG--CGTTTTATT----------AGGCTAA--CAACG--AAAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATCT-ATA----AGAAAGGGCGGTTTTCCAAACct
gi|8 : taaggttaatcggcagtttttcgcctccagttttaattctatagtgcgacctagtatttccggtgaaattttgccatcgaatgttatcaagattccacagaaaatagA-CAACG--ACAAATTATTT----AAAGTTTGCCCCAAC-AAG--CCCAAGATC---TA----AGAAAAGACGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGGAAGTGCACTACTAGCCGCTC----TTAACATCCCCGG
gi|9 : AAGTTGTCCAAAAG--CGTTTTATT----------AG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTATGGAACTACCTTAAGCTGATAATTAAATAAATGTGCCAGTTAAAACTATGTACAGAGTGCTAATAGAATTTTTTTCCCCATTATATATGTATATCATAAGGTATATTGGCTGTCGTGT
Alignments
lowQualScore : 11 3333333333 11 11 2222 1 11 444444444 66666666666666666666 1 2222 1111 22222 1 33333 1 22222 1 33333333 2222 33333333 1 22222 222222 1111 1 5555555555555 1 111 1 11 1 1111 88888888888888888888888888888 2222 1 11 1 111 1 22 11 111 111 333333 1 1 22222 1 44444444444 11 2222222 1 1 222222 222 33333333 33333333333 11111111 666666666666666666 33333333333 11111 1111111 111 1111 1111 111 11 11 1 11111 111 1111 55555555555555555555555555555555 11 1 1 1 555555555 555555555 1 11 1 11 1 11 1 11 11 3333333 222222 11 1 22222 1 11 1 1 222 11 11 222 555555555555555 11 11 11 1 11 1 1 33333333 1 1 11 1 1 11 1 1 1 1 11 1 1
lowQualScore : 11 0 5555555555 33 33 1111 0 33 3 222222222 88888888888888888888 5 1111 3 3333 2 55555 0 5555 55555 3 11111 3 44444444 1 1 5555 55555555 5 2 1 77777 888888 1 5555 0 9999999999999 3 5 777 0 5 0 8 8 0 1 11 8 8 8 8 0 3 3 7777 88888888888888888888888888888 7 3333 6 3 33 0 111 0 33 22 777 777 111111 0 0 55555 1 0 2 00000000000 33 1111111 0 0 0 888888 777 66666666 1 11111111111 2 99999999 0 000000000000000000 77777777777 88 66666 6 99 6 5 4444444 5 000 2222 5 0 77 2222 555 1 33 5 5 5 33 5 2 6 3 66666 111 2222 5 5 55555555555555555555555555555555 2 5 33 0 0 0 333333333 333333333 3 88 7 5 88 5 1 88 5 88 1 88 1 3333333 999999 88 1 5 55555 5 1 88 5 5 111 1 1 88 66 000 1 444444444444444 88 88 1 88 5 88 5 5 22222222 5 5 1 88 5 1 5 88 1 5 1 5 5 1 1 5 77 5 1 1 5
lowQualScore : .. . .......... .. .. .... . .. . ......... .................... . .... . .... . ..... . .... ..... . ..... . ........ . . .... ........ . . . ..... ...... . .... . ............. . . ... . . . . . . . .. . . . . . . . .... ............................. . .... . . .. . ... . .. .. ... ... ...... . . ..... . . . ........... .. ....... . . . ...... ... ........ . ........... . ........ . .................. ........... .. ..... . .. . . ....... . ... .... . . .. .... ... . .. . . . .. . . . . ..... ... .... . . ................................ . . .. . . . ......... ......... . .. . . .. . . .. . .. . .. . ....... ...... .. . . ..... . . .. . . ... . . .. .. ... . ............... .. .. . .. . .. . . ........ . . . .. . . . .. . . . . . . . . .. . . . .
lowQualScore : 00 8 0000000000 22 88 2222 0 88 2 555555555 00000000000000000000 5 2222 2 1111 0 00000 0 5555 00000 3 33333 3 55555555 0 0 0000 55555555 5 5 0 00000 555555 0 8888 0 0000000000000 2 5 555 0 6 8 0 0 8 4 00 0 0 0 0 0 2 2 8888 88888888888888888888888888888 3 3333 7 3 88 0 000 0 88 55 555 555 222222 0 0 00000 0 0 5 55555555555 88 8888888 0 0 2 888888 555 22222222 0 55555555555 0 88888888 8 888888888888888888 22222222222 88 77777 7 22 7 7 4444444 7 000 1111 7 1 99 1111 777 0 66 0 7 7 66 7 0 7 5 77777 777 1111 7 7 11111111111111111111111111111111 2 0 88 0 0 0 333333333 333333333 3 33 3 0 55 5 0 00 5 55 0 00 0 5555555 555555 00 0 0 55555 0 0 55 0 5 000 0 0 00 55 555 0 000000000000000 00 00 0 55 5 55 0 5 55555555 5 0 0 00 5 0 0 00 0 0 0 0 5 0 0 5 55 5 0 0 5
consensus : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGAAAAAGCCCGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTG-TGCAA-CATTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-AATGAACT--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ANA-TGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GACCAGATAA-T-TAATC---AT----NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--AATATA-TCT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TG-AAACAG-CT-AA--------TTGTTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGT-ACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
Reference ( family-2564 ) : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGAAAAAGCCCGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTG-TGCAA-CATTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-AATGAACT--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ANA-TGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GACCAGATAAAT-TAATC---AT----NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--AATATA-TCT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TG-AAACAG-CT-AA--------TTGTTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGT-ACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
gi|1 : TTCAGAAGAACGTTT-ATTTTCGCATGTAAAACTAAAGCAACGTGACAAAATACTCTCTGAAAGTTTGCCTCGACCGAGGACCCAAAA-CGAATACGAGAGAAAGGGCGGTTATCCAAAC
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcAGAAGAGGCCCAAGAATGAGAGCCGCAGAGACAAACTCTGAGAGGTCGGTACGACATCTGGTGTAAACACTCCCTCACATAATATGTGATAATAGACTGTGTATTGTTTTCATAGCATC-CTCTCACAAAGACATTTTTTCATTCGCCCATATAAAGGGAA-G--ATCGACTACTCATTCTCGGACAGTG-AAGTGGAGGTTCA-AAAAAAACGC-C-A-ATAATCAGCTTCTCTAGTTTGAGTCATTTT-AATGTTAAATTGCTTTCTACATTACATTACATTGC--TATT-GTGACAGTGTGC-ATACTAGTTAGAGAGTTAG-ACATATTAGAGGTTAAATGACCCTGGTATATGACTAAT-T-TATAGAGTGTG-GTCAGTTGGCTCCCTTTTGAGAAATATACCTTGT-CAG-GGAGAAGGAAA-TGTTAG---A--C----ATCATTTACTCA----CCCGCCCC-CACCC------CTTCTGGTTGCGCAATGATATTGGTTGGGT--GTAT-----TTATTTGCATGTTCA-TA---GCCCAGATAA----AATC---ATGTGAGTTTTCAATCC--AGTGT--TAACCTTAGTTTTTCATTTATTTTAGCCAACT-GAATTGTAAAAACTCAAATATA-TCTATATTGTGGAAGATC----TTGCCTA--TTTTTTATATAGCTCTTTTTCTTACAAAA-TTCCTTGATAAATA--GTTTGAAAAATATTCTTTAAGGGCGTTGG---TGGTGTTATCTTGTTAAATA-----T-CT-AAACAcattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaaca----TA-TTTTTTAAA-AAATGGTATGTAAACAGGCT-AACAAAGGTGTGGTTTTTAAAATTCTCCGTTTAGGTCG-AACAATTGTCATGATTTCCTCGCTCTACGTTTCTAAA---------GTCGAAAGTTATATTTTCGGCAGAAAAAAATTAACATTCGTCATAGTTTAAAGTTATTCTGTTTAAATCAATTCTTAATTTATTCAATACTCCATTAATGAGTTACATTGGTGCCCATTTATTAT-ATTAGTCATTCAAAGTATGCATATGTTTTGGTGACTCTACTTGATACTAACATTCATT-GACTCTCATTAGTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTGA--TTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGAATTGTGTTGTTAAAATGCAACGAGAGAGGT-AGGTATGTCTGTACATGGCTTTATTTGGAGTTAAGTATATAACGTTGTGATATAGCTCGTTAAAGA-AGATA-AAAAGATATAGGGGGTAAAACAGAACTTTATT-AAAGTATGtagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|11 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattcctC-ACTGA-TAC-CA----------GTGAA-GT---GGTTTT-AAAAA-TCGCAC-A-ATAATC--------T--GTTAAG-CATTTT-AATG-TAAA-TGACTTTTNC-T---ATCAC-CTACGAC-TTGGT---------C-ATA-------GA---TCAa
gi|12 : --T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGCAA----G--AATATA-TCT---TCTTGGAAGATC----TC-CCTA--TTG----TAAAGC---TATTCTAAC--AA-TTCCTTA-TAAA-A--G-TTGAAA
gi|13 : CCACTAGCCGCTCGATCTTAACATCCCTGGGATAGCAG--AAAAAAGCCTGA-----AGAGCCA-AGAAAAAtt
gi|14 : -TTCCTTG-TAAA-A--G-TTG-AAATTG-TCATTAA-G-----TG---TA----TA-CGTGTTAAA-A-----C-TG---------------------TTATTTTGAAAAAT-
gi|15 : ATAATGAGAC-GCCACTGA-TAC-CA----------ATGAA-GT---GGTTTTTAAAAAATCGCAC-A-
gi|16 : TAATCAACCTCTCT--CTTGAG-CATTTT-AATG-AAAA-TGATTT
gi|17 : GAAGTCGTCCAGAAG--CGTTTTATT----------
gi|2 : ccacagaaaatGAAGTCGTCCAGAAG--CGTTTTATT----------AAGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCTCGAC-AAG--CCCAAGATC---TA----AGAAAGGATGGTTTTCCAAACTGGT--------------------GGCTA-GGGGTATCATATGTAAATGCACTACTAGCCGCTC----TTA-CACCCCCGTAATATC--GAAAAAAAGCATGA-----AGAGCTG-AGAAAGAAA-------AAGTCGG-AGGACATTTG-T--AA-CATTC--------ATTATGTTGT--T-GATTGTGTATT--------AGTATCACTCTCAAGAATA-----TTTCACTC------ATAAGAGGAATGC-ACCGA-TAC--AT---------GTGAAAGT---GGTTTT-AAAAAATCGCACTATATAATCAGCTTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-AT---------TTATA-------AA---TTAGTATAT-TTAGAG-TT-ACTGAACT--GTATATGTCT-AC-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAA-A----CTGT-CAGTAAA-----ATA-TGTTAG---A--A----ATCA--TACTTA----CCC-CCTC-CCCCC------CTTC---TTGAAGTAT--------TTCTGT--AT-T-----TTATTTGCATGTCTACTA---GACCAGATAAATGTAATCA--AT----ATTTTCAATTT--A---TTGT-ACATT-GTATTTTA-----TTGAG-CC--T-G-ATTGTAA----T--AATATATTCT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TATTCAAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TA-AAACAG-CTCAA--------TTGTTTTTTTAAAT-TCCGTTTA--TTGAAACA-TTTTCA-GATTTTTTC---------TTCCAAA---------ATTGAAAGT-ACATTTTT--CAG-AAAAAATTAACATTC-TC--AG-TTACA--TA-TCTG--CAACT--ATTATTAA---A---AATAC------AA--AGATGCATT-GT-----TTTATTATCATTTATCA--CAAAGTATG-ATGTGTTTTGGTG-CTCTGC---ATAATAAAAT--ATGAGA---TCATTACTT---------------ATATGTGC--TAAA--TTTTCATTTTTGAAAAAAAACGG-TG--TGTGTACTC-CATATCGGATTATG-TGTTAAAATGCA-------TGGTAAGGTATGTCT-TGCATAGTCTTTTTTG--GTT-AGTATATCA-GTTGT--TTTAGCT-ATTACAGAGAAATATATAATAT-TA--GGGT-AAACAGAACGTTTTTAAAAGTATG
gi|3 : ATGTAAATGCACTACTAGCCGCTA----TTAACATCCCCGGGATATCAGGGGGAAAAACCTGA-----ATAGCCG-AG----AAA----GAGAAGTCCG-AGGACATCT--TGCAA-CATTCgaactac
gi|3 : AAAACCCGCAC-A-ATAATCAGCCTTTCT--CTTGAG-TATTTTTAATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT------------T-ATAT------AA---TTAGTA----------GTT-GATAAACT--GTATATGACT-AT-T-TGTA-AATGT--GTTAG-TGG---CCTTT---GAAG-A----CTGT-CAG-GAA-----ATAATGTTAG---A--A----ATCA--TAC-----------CCCC-CCCCC------TTTC---TTGCAGAAT--------TTCTGT--AT-T-----TTATTTGCATGTC---TA---GACCAGATAA-T-TAAT----AT-----TTTCCGATTCCTA---T--C-ACTTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--TATATA-TCT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TTTTCTAACA-AA-TTCaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacccgcacaataatcagcctttctcttgagtatttttaatgtaaatgatttctacttacattacattacctttatataattagtagttgataaactgtatatgactatttgtaaatgtgttagtggcctttgaagactgtcaggaaataatgttagaaatcatacccccccccctttcttgcagaatttctgtattttatttgcatgtctagaccagataattaatattttccgattcctatcactttgtattttatttagcatgattgtaattatatatcttcttggaagatctccctattttaaagcttttctaacaaattc
gi|4 : atgtaaatgcactactagccgctattaacatccccgggatatcagggggaaaaacctgaatagccgagaaagagaagtccgaggacatcttgcaacattcaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT--GTGTGTGAGT-GTGTGTGTA-TATGTTTGTCA--TGA---CCTTT---GAAACA----CTGCACAT-GAC-----AAA-C-TTAGTGTATCATTTCATCA--TACTCATTTACCC-CCCCACTCTCACGTATCTTCA--TTGCAGAAT--------TTGTGTTGCT-TCTCGCTTATCTGTGTCTCGACTGTGTGGCTCAAGAACT-TA-TCTCCCT----CTTTTCAATTC--A---TGTT-ACCT--GTATTTTA-----TCTAG-CA--TTG-ATT-TAA----T--AATATA-TCT---TTTTGGAAGATC----TT-CT----CTT----TAAAGCA--TTATCTTAC--AATTTTCTTG-TAAA-ATTT-TTGAAA--TG-TC-TTAAGG-----GG---TA----TA-CTTGTT-CA-A-----T-AG-AGGCAT-CT-TG--------TCGCGTTTATAAGT-
gi|5 : TTTA-----TTTAG-CA--T-G-ATTGTAA----T--GATATA-TCT---TCGTGAAAGATCGATCTC-CCTA--TTT----TAAAGC---TATTATAAC--AA-TTCCATG-TAAA-A--G-TTG-AAATTG-TCATTAAGG-----GGGTATA----TA-GGTGTTAAA-A-----T-TG---------------------TTATTTTGAAAAAT-agattatgaa
gi|5 : -AAAGAG-CTCAA--------TTGTTTTTAAAA-T-TCCGTTTG--TCG-AACA-TTTTCA-GATTTTTTC---------CTCCAAATACATGTACGTCGAAAGT-ACATTTTT--CAGAAAatacatgggcaattaaatatttcttttcacaaaatggtatgtaaagagctcaattgtttttaaaattccgtttgtcgaacattttcagattttttcctccaaatacatgtacgtcgaaagtacatttttcagaaa
gi|6 : tttatttagcatgattgtaatgatatatcttcgtgaaagatcgatctccctattttaaagctattataacaattccatgtaaaagttgaaattgtcattaagggggtatataggtgttaaaattgttattttgaaaaatatacatgggcaattaaatatttcttttcacaaaatggtatgt-ATTGTAA----T--ATCATA-TCT---TTTTAGAAGATC----TC-CCCATTTTT----TAAAAC---TTTTCCAAC--AA-TTCCTTG-TAAA-AT-G-TGG--AATTG-TCATTAAGA-----AG---TA----TA-CTTATTAAA-A-----C-TA-TTACAG----------------G-TTTTGAAAAT-T
gi|6 : -----T-TGTAAACAG-CT-AA--------A-ATTTTTAAAAAT-TCCGTTTA--TTT-AACA-TTTTCA-GATTTTTatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatttgtaaacagctaaaatttttaaaaattccgtttatttaacattttcagatttttct
gi|7 : attgtaatatcatatctttttagaagatctccccattttttaaaacttttccaacaattccttgtaaaatgtggaattgtcattaagaagtatacttattaaaactattacaggttttgaaaattatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatAGTTGTCCACAAG--CGTTTTATT----------AGGCTAA--CAACG--AAAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATCT-ATA----AGAAAGGGCGGTTTTCCAAACct
gi|8 : taaggttaatcggcagtttttcgcctccagttttaattctatagtgcgacctagtatttccggtgaaattttgccatcgaatgttatcaagattccacagaaaatagA-CAACG--ACAAATTATTT----AAAGTTTGCCCCAAC-AAG--CCCAAGATC---TA----AGAAAAGACGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGGAAGTGCACTACTAGCCGCTC----TTAACATCCCCGG
gi|9 : AAGTTGTCCAAAAG--CGTTTTATT----------AG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTATGGAACTACCTTAAGCTGATAATTAAATAAATGTGCCAGTTAAAACTATGTACAGAGTGCTAATAGAATTTTTTTCCCCATTATATATGTATATCATAAGGTATATTGGCTGTCGTGT
Alignments
lowQualScore : 11 3333333333 11 11 2222 1 11 444444444 66666666666666666666 1 2222 1111 22222 1 33333 1 22222 1 33333333 2222 33333333 1 22222 222222 1111 1 5555555555555 1 111 1 11 1 1111 88888888888888888888888888888 2222 1 11 1 111 1 22 11 111 111 333333 1 1 22222 1 44444444444 11 2222222 1 1 222222 222 33333333 33333333333 11111111 1 11 55555555555 33333333333 11111 1111111 111 1111 1111 111 11 11 1 11111 111 1111 55555555555555555555555555555555 11 1 1 1 555555555 555555555 1 11 1 11 1 11 1 11 11 3333333 222222 11 1 22222 1 11 1 1 222 11 11 222 555555555555555 11 11 11 1 11 1 1 33333333 1 1 11 1 1 11 1 1 1 1 11 1 1
lowQualScore : 11 0 5555555555 33 33 1111 0 33 3 222222222 88888888888888888888 5 1111 3 3333 2 55555 0 5555 55555 3 11111 3 44444444 1 1 5555 55555555 5 2 1 77777 888888 1 5555 0 9999999999999 3 5 777 0 5 0 8 8 0 1 11 8 8 8 8 0 3 3 7777 88888888888888888888888888888 7 3333 6 3 33 0 111 0 33 22 777 777 111111 0 0 55555 1 0 2 00000000000 33 1111111 0 0 0 888888 777 66666666 1 11111111111 2 99999999 0 0 77 00000000000 77777777777 88 66666 6 99 6 5 4444444 5 000 2222 5 0 2222 77 555 1 33 5 5 5 33 5 2 6 3 66666 111 2222 5 5 55555555555555555555555555555555 2 5 33 0 0 0 333333333 333333333 3 88 7 5 88 5 1 88 5 88 1 88 1 3333333 999999 88 1 5 55555 5 1 88 5 5 111 1 1 88 66 000 1 444444444444444 88 88 1 88 5 88 5 5 22222222 5 5 1 88 5 1 5 88 1 5 1 5 5 1 1 5 77 5 1 1 5
lowQualScore : .. . .......... .. .. .... . .. . ......... .................... . .... . .... . ..... . .... ..... . ..... . ........ . . .... ........ . . . ..... ...... . .... . ............. . . ... . . . . . . . .. . . . . . . . .... ............................. . .... . . .. . ... . .. .. ... ... ...... . . ..... . . . ........... .. ....... . . . ...... ... ........ . ........... . ........ . . .. ........... ........... .. ..... . .. . . ....... . ... .... . . .... .. ... . .. . . . .. . . . . ..... ... .... . . ................................ . . .. . . . ......... ......... . .. . . .. . . .. . .. . .. . ....... ...... .. . . ..... . . .. . . ... . . .. .. ... . ............... .. .. . .. . .. . . ........ . . . .. . . . .. . . . . . . . . .. . . . .
lowQualScore : 00 8 0000000000 22 88 2222 0 88 2 555555555 00000000000000000000 5 2222 2 1111 0 00000 0 5555 00000 3 33333 3 55555555 0 0 0000 55555555 5 5 0 00000 555555 0 8888 0 0000000000000 2 5 555 0 6 8 0 0 8 4 00 0 0 0 0 0 2 2 8888 88888888888888888888888888888 3 3333 7 3 88 0 000 0 88 55 555 555 222222 0 0 00000 0 0 5 55555555555 88 8888888 0 0 2 888888 555 22222222 0 55555555555 0 88888888 8 0 00 00000000000 22222222222 88 77777 7 22 7 7 4444444 7 000 1111 7 1 1111 99 777 0 66 0 7 7 66 7 0 7 5 77777 777 1111 7 7 11111111111111111111111111111111 2 0 88 0 0 0 333333333 333333333 3 33 3 0 55 5 0 00 5 55 0 00 0 5555555 555555 00 0 0 55555 0 0 55 0 5 000 0 0 00 55 555 0 000000000000000 00 00 0 55 5 55 0 5 55555555 5 0 0 00 5 0 0 00 0 0 0 0 5 0 0 5 55 5 0 0 5
consensus : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGAAAAAGCCCGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTG-TGCAA-CATTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-AATGAACT--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ANA-TGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GACCAGAT-AAT-TAATC---AT----NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--AATATA-TCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TG-AAACAG-CT-AA--------TTGTTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGT-ACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
Reference ( family-2564 ) : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGAAAAAGCCCGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTG-TGCAA-CATTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-AATGAACT--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ANA-TGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GACCAGAT-AAT-TAATC---AT----NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--AATATA-TCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TG-AAACAG-CT-AA--------TTGTTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGT-ACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
gi|1 : TTCAGAAGAACGTTT-ATTTTCGCATGTAAAACTAAAGCAACGTGACAAAATACTCTCTGAAAGTTTGCCTCGACCGAGGACCCAAAA-CGAATACGAGAGAAAGGGCGGTTATCCAAAC
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcAGAAGAGGCCCAAGAATGAGAGCCGCAGAGACAAACTCTGAGAGGTCGGTACGACATCTGGTGTAAACACTCCCTCACATAATATGTGATAATAGACTGTGTATTGTTTTCATAGCATC-CTCTCACAAAGACATTTTTTCATTCGCCCATATAAAGGGAA-G--ATCGACTACTCATTCTCGGACAGTG-AAGTGGAGGTTCA-AAAAAAACGC-C-A-ATAATCAGCTTCTCTAGTTTGAGTCATTTT-AATGTTAAATTGCTTTCTACATTACATTACATTGC--TATT-GTGACAGTGTGC-ATACTAGTTAGAGAGTTAG-ACATATTAGAGGTTAAATGACCCTGGTATATGACTAAT-T-TATAGAGTGTG-GTCAGTTGGCTCCCTTTTGAGAAATATACCTTGT-CAG-GGAGAAGGAAA-TGTTAG---A--C----ATCATTTACTCA----CCCGCCCC-CACCC------CTTCTGGTTGCGCAATGATATTGGTTGGGT--GTAT-----TTATTTGCATGTTCA-TA---GCCCAGAT-AA---AATC---ATGTGAGTTTTCAATCC--AGTGT--TAACCTTAGTTTTTCATTTATTTTAGCCAACT-GAATTGTAAAAACTCAAATATA-TCTATATTGTGGAAGATC----TTGCCTATTTTTTAT--ATAGCTCTTTTTCTTACAAAA-TTCCTTGATAAATA--GTTTGAAAAATATTCTTTAAGGGCGTTGG---TGGTGTTATCTTGTTAAATA-----T-CT-AAACAcattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaaca----TA-TTTTTTAAA-AAATGGTATGTAAACAGGCT-AACAAAGGTGTGGTTTTTAAAATTCTCCGTTTAGGTCG-AACAATTGTCATGATTTCCTCGCTCTACGTTTCTAAA---------GTCGAAAGTTATATTTTCGGCAGAAAAAAATTAACATTCGTCATAGTTTAAAGTTATTCTGTTTAAATCAATTCTTAATTTATTCAATACTCCATTAATGAGTTACATTGGTGCCCATTTATTAT-ATTAGTCATTCAAAGTATGCATATGTTTTGGTGACTCTACTTGATACTAACATTCATT-GACTCTCATTAGTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTGA--TTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGAATTGTGTTGTTAAAATGCAACGAGAGAGGT-AGGTATGTCTGTACATGGCTTTATTTGGAGTTAAGTATATAACGTTGTGATATAGCTCGTTAAAGA-AGATA-AAAAGATATAGGGGGTAAAACAGAACTTTATT-AAAGTATGtagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|11 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattcctC-ACTGA-TAC-CA----------GTGAA-GT---GGTTTT-AAAAA-TCGCAC-A-ATAATC--------T--GTTAAG-CATTTT-AATG-TAAA-TGACTTTTNC-T---ATCAC-CTACGAC-TTGGT---------C-ATA-------GA---TCAa
gi|12 : --T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGCAA----G--AATATA-TCT---TCTTGGAAGATC----TC-CCTATTG----T--AAAGC---TATTCTAAC--AA-TTCCTTA-TAAA-A--G-TTGAAA
gi|13 : CCACTAGCCGCTCGATCTTAACATCCCTGGGATAGCAG--AAAAAAGCCTGA-----AGAGCCA-AGAAAAAtt
gi|14 : -TTCCTTG-TAAA-A--G-TTG-AAATTG-TCATTAA-G-----TG---TA----TA-CGTGTTAAA-A-----C-TG---------------------TTATTTTGAAAAAT-
gi|15 : ATAATGAGAC-GCCACTGA-TAC-CA----------ATGAA-GT---GGTTTTTAAAAAATCGCAC-A-
gi|16 : TAATCAACCTCTCT--CTTGAG-CATTTT-AATG-AAAA-TGATTT
gi|17 : GAAGTCGTCCAGAAG--CGTTTTATT----------
gi|2 : ccacagaaaatGAAGTCGTCCAGAAG--CGTTTTATT----------AAGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCTCGAC-AAG--CCCAAGATC---TA----AGAAAGGATGGTTTTCCAAACTGGT--------------------GGCTA-GGGGTATCATATGTAAATGCACTACTAGCCGCTC----TTA-CACCCCCGTAATATC--GAAAAAAAGCATGA-----AGAGCTG-AGAAAGAAA-------AAGTCGG-AGGACATTTG-T--AA-CATTC--------ATTATGTTGT--T-GATTGTGTATT--------AGTATCACTCTCAAGAATA-----TTTCACTC------ATAAGAGGAATGC-ACCGA-TAC--AT---------GTGAAAGT---GGTTTT-AAAAAATCGCACTATATAATCAGCTTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-AT---------TTATA-------AA---TTAGTATAT-TTAGAG-TT-ACTGAACT--GTATATGTCT-AC-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAA-A----CTGT-CAGTAAA-----ATA-TGTTAG---A--A----ATCA--TACTTA----CCC-CCTC-CCCCC------CTTC---TTGAAGTAT--------TTCTGT--AT-T-----TTATTTGCATGTCTACTA---GACCAGATAAATGTAATCA--AT----ATTTTCAATTT--A---TTGT-ACATT-GTATTTTA-----TTGAG-CC--T-G-ATTGTAA----T--AATATATTCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TATTCAAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TA-AAACAG-CTCAA--------TTGTTTTTTTAAAT-TCCGTTTA--TTGAAACA-TTTTCA-GATTTTTTC---------TTCCAAA---------ATTGAAAGT-ACATTTTT--CAG-AAAAAATTAACATTC-TC--AG-TTACA--TA-TCTG--CAACT--ATTATTAA---A---AATAC------AA--AGATGCATT-GT-----TTTATTATCATTTATCA--CAAAGTATG-ATGTGTTTTGGTG-CTCTGC---ATAATAAAAT--ATGAGA---TCATTACTT---------------ATATGTGC--TAAA--TTTTCATTTTTGAAAAAAAACGG-TG--TGTGTACTC-CATATCGGATTATG-TGTTAAAATGCA-------TGGTAAGGTATGTCT-TGCATAGTCTTTTTTG--GTT-AGTATATCA-GTTGT--TTTAGCT-ATTACAGAGAAATATATAATAT-TA--GGGT-AAACAGAACGTTTTTAAAAGTATG
gi|3 : ATGTAAATGCACTACTAGCCGCTA----TTAACATCCCCGGGATATCAGGGGGAAAAACCTGA-----ATAGCCG-AG----AAA----GAGAAGTCCG-AGGACATCT--TGCAA-CATTCgaactac
gi|3 : AAAACCCGCAC-A-ATAATCAGCCTTTCT--CTTGAG-TATTTTTAATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT------------T-ATAT------AA---TTAGTA----------GTT-GATAAACT--GTATATGACT-AT-T-TGTA-AATGT--GTTAG-TGG---CCTTT---GAAG-A----CTGT-CAG-GAA-----ATAATGTTAG---A--A----ATCA--TAC-----------CCCC-CCCCC------TTTC---TTGCAGAAT--------TTCTGT--AT-T-----TTATTTGCATGTC---TA---GACCAGAT-AAT-TAAT----AT-----TTTCCGATTCCTA---T--C-ACTTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--TATATA-TCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TTTTCTAACA-AA-TTCaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacccgcacaataatcagcctttctcttgagtatttttaatgtaaatgatttctacttacattacattacctttatataattagtagttgataaactgtatatgactatttgtaaatgtgttagtggcctttgaagactgtcaggaaataatgttagaaatcatacccccccccctttcttgcagaatttctgtattttatttgcatgtctagaccagataattaatattttccgattcctatcactttgtattttatttagcatgattgtaattatatatcttcttggaagatctccctattttaaagcttttctaacaaattc
gi|4 : atgtaaatgcactactagccgctattaacatccccgggatatcagggggaaaaacctgaatagccgagaaagagaagtccgaggacatcttgcaacattcaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT--GTGTGTGAGT-GTGTGTGTA-TATGTTTGTCA--TGA---CCTTT---GAAACA----CTGCACAT-GAC-----AAA-C-TTAGTGTATCATTTCATCA--TACTCATTTACCC-CCCCACTCTCACGTATCTTCA--TTGCAGAAT--------TTGTGTTGCT-TCTCGCTTATCTGTGTCTCGACTGTGTGGCTCAAG-AAC-TTATCTCCCT----CTTTTCAATTC--A---TGTT-ACCT--GTATTTTA-----TCTAG-CA--TTG-ATT-TAA----T--AATATA-TCT---TTTTGGAAGATC----TT-CT--CTT----T--AAAGCA--TTATCTTAC--AATTTTCTTG-TAAA-ATTT-TTGAAA--TG-TC-TTAAGG-----GG---TA----TA-CTTGTT-CA-A-----T-AG-AGGCAT-CT-TG--------TCGCGTTTATAAGT-
gi|5 : TTTA-----TTTAG-CA--T-G-ATTGTAA----T--GATATA-TCT---TCGTGAAAGATCGATCTC-CCTATTT----T--AAAGC---TATTATAAC--AA-TTCCATG-TAAA-A--G-TTG-AAATTG-TCATTAAGG-----GGGTATA----TA-GGTGTTAAA-A-----T-TG---------------------TTATTTTGAAAAAT-agattatgaa
gi|5 : -AAAGAG-CTCAA--------TTGTTTTTAAAA-T-TCCGTTTG--TCG-AACA-TTTTCA-GATTTTTTC---------CTCCAAATACATGTACGTCGAAAGT-ACATTTTT--CAGAAAatacatgggcaattaaatatttcttttcacaaaatggtatgtaaagagctcaattgtttttaaaattccgtttgtcgaacattttcagattttttcctccaaatacatgtacgtcgaaagtacatttttcagaaa
gi|6 : tttatttagcatgattgtaatgatatatcttcgtgaaagatcgatctccctattttaaagctattataacaattccatgtaaaagttgaaattgtcattaagggggtatataggtgttaaaattgttattttgaaaaatatacatgggcaattaaatatttcttttcacaaaatggtatgt-ATTGTAA----T--ATCATA-TCT---TTTTAGAAGATC----TC-CCCATTT----TTTAAAAC---TTTTCCAAC--AA-TTCCTTG-TAAA-AT-G-TGG--AATTG-TCATTAAGA-----AG---TA----TA-CTTATTAAA-A-----C-TA-TTACAG----------------G-TTTTGAAAAT-T
gi|6 : -----T-TGTAAACAG-CT-AA--------A-ATTTTTAAAAAT-TCCGTTTA--TTT-AACA-TTTTCA-GATTTTTatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatttgtaaacagctaaaatttttaaaaattccgtttatttaacattttcagatttttct
gi|7 : attgtaatatcatatctttttagaagatctccccattttttaaaacttttccaacaattccttgtaaaatgtggaattgtcattaagaagtatacttattaaaactattacaggttttgaaaattatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatAGTTGTCCACAAG--CGTTTTATT----------AGGCTAA--CAACG--AAAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATCT-ATA----AGAAAGGGCGGTTTTCCAAACct
gi|8 : taaggttaatcggcagtttttcgcctccagttttaattctatagtgcgacctagtatttccggtgaaattttgccatcgaatgttatcaagattccacagaaaatagA-CAACG--ACAAATTATTT----AAAGTTTGCCCCAAC-AAG--CCCAAGATC---TA----AGAAAAGACGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGGAAGTGCACTACTAGCCGCTC----TTAACATCCCCGG
gi|9 : AAGTTGTCCAAAAG--CGTTTTATT----------AG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTATGGAACTACCTTAAGCTGATAATTAAATAAATGTGCCAGTTAAAACTATGTACAGAGTGCTAATAGAATTTTTTTCCCCATTATATATGTATATCATAAGGTATATTGGCTGTCGTGT
Alignments
lowQualScore : 11 3333333333 11 11 2222 1 11 444444444 66666666666666666666 1 2222 1111 22222 1 33333 1 22222 1 33333333 2222 33333333 1 22222 222222 1111 1 5555555555555 1 111 1 11 1 1111 88888888888888888888888888888 2222 1 11 1 111 1 22 11 111 111 333333 1 1 22222 1 44444444444 11 2222222 1 1 222222 222 33333333 33333333333 11111111 1 11 55555555555 33333333333 11111 1111111 111 1111 1111 111 11 11 1 11111 111 1111 55555555555555555555555555555555 11 1 1 1 555555555 555555555 1 11 1 11 1 11 1 11 11 3333333 222222 11 1 22222 1 11 1 1 222 11 11 222 555555555555555 11 11 11 1 11 1 1 33333333 1 1 11 1 1 11 1 1 1 1 11 1 1
lowQualScore : 11 0 5555555555 33 33 1111 0 33 3 222222222 88888888888888888888 5 1111 3 3333 2 55555 0 5555 55555 3 11111 3 44444444 1 1 5555 55555555 5 2 1 77777 888888 1 5555 0 9999999999999 3 5 777 0 5 0 8 8 0 1 11 8 8 8 8 0 3 3 7777 88888888888888888888888888888 7 3333 6 3 33 0 111 0 33 22 777 777 111111 0 0 55555 1 0 2 00000000000 33 1111111 0 0 0 888888 777 66666666 1 11111111111 2 99999999 0 0 77 00000000000 77777777777 88 66666 6 99 6 5 4444444 5 000 2222 5 0 2222 77 555 1 33 5 5 5 33 5 2 6 3 66666 111 2222 5 5 55555555555555555555555555555555 2 5 33 0 0 0 333333333 333333333 3 88 7 5 88 5 1 88 5 88 1 88 1 3333333 999999 88 1 5 55555 5 1 88 5 5 111 1 1 88 66 000 1 444444444444444 88 88 1 88 5 88 5 5 22222222 5 5 1 88 5 1 5 88 1 5 1 5 5 1 1 5 77 5 1 1 5
lowQualScore : .. . .......... .. .. .... . .. . ......... .................... . .... . .... . ..... . .... ..... . ..... . ........ . . .... ........ . . . ..... ...... . .... . ............. . . ... . . . . . . . .. . . . . . . . .... ............................. . .... . . .. . ... . .. .. ... ... ...... . . ..... . . . ........... .. ....... . . . ...... ... ........ . ........... . ........ . . .. ........... ........... .. ..... . .. . . ....... . ... .... . . .... .. ... . .. . . . .. . . . . ..... ... .... . . ................................ . . .. . . . ......... ......... . .. . . .. . . .. . .. . .. . ....... ...... .. . . ..... . . .. . . ... . . .. .. ... . ............... .. .. . .. . .. . . ........ . . . .. . . . .. . . . . . . . . .. . . . .
lowQualScore : 00 8 0000000000 22 88 2222 0 88 2 555555555 00000000000000000000 5 2222 2 1111 0 00000 0 5555 00000 3 33333 3 55555555 0 0 0000 55555555 5 5 0 00000 555555 0 8888 0 0000000000000 2 5 555 0 6 8 0 0 8 4 00 0 0 0 0 0 2 2 8888 88888888888888888888888888888 3 3333 7 3 88 0 000 0 88 55 555 555 222222 0 0 00000 0 0 5 55555555555 88 8888888 0 0 2 888888 555 22222222 0 55555555555 0 88888888 8 0 00 00000000000 22222222222 88 77777 7 22 7 7 4444444 7 000 1111 7 1 1111 99 777 0 66 0 7 7 66 7 0 7 5 77777 777 1111 7 7 11111111111111111111111111111111 2 0 88 0 0 0 333333333 333333333 3 33 3 0 55 5 0 00 5 55 0 00 0 5555555 555555 00 0 0 55555 0 0 55 0 5 000 0 0 00 55 555 0 000000000000000 00 00 0 55 5 55 0 5 55555555 5 0 0 00 5 0 0 00 0 0 0 0 5 0 0 5 55 5 0 0 5
consensus : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGAAAAAGCCCGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTG-TGCAA-CATTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-AATGAACT--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ANA-TGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GACCAGAT-AAT-TAATC---AT----NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--AATATA-TCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TG-AAACAG-CT-AA--------TTGTTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGT-ACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
Reference ( family-2564 ) : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGAAAAAGCCCGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTG-TGCAA-CATTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-AATGAACT--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ANA-TGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GACCAGAT-AAT-TAATC---AT----NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--AATATA-TCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TG-AAACAG-CT-AA--------TTGTTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGT-ACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
gi|1 : TTCAGAAGAACGTTT-ATTTTCGCATGTAAAACTAAAGCAACGTGACAAAATACTCTCTGAAAGTTTGCCTCGACCGAGGACCCAAAA-CGAATACGAGAGAAAGGGCGGTTATCCAAAC
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcAGAAGAGGCCCAAGAATGAGAGCCGCAGAGACAAACTCTGAGAGGTCGGTACGACATCTGGTGTAAACACTCCCTCACATAATATGTGATAATAGACTGTGTATTGTTTTCATAGCATC-CTCTCACAAAGACATTTTTTCATTCGCCCATATAAAGGGAA-G--ATCGACTACTCATTCTCGGACAGTG-AAGTGGAGGTTCA-AAAAAAACGC-C-A-ATAATCAGCTTCTCTAGTTTGAGTCATTTT-AATGTTAAATTGCTTTCTACATTACATTACATTGC--TATT-GTGACAGTGTGC-ATACTAGTTAGAGAGTTAG-ACATATTAGAGGTTAAATGACCCTGGTATATGACTAAT-T-TATAGAGTGTG-GTCAGTTGGCTCCCTTTTGAGAAATATACCTTGT-CAG-GGAGAAGGAAA-TGTTAG---A--C----ATCATTTACTCA----CCCGCCCC-CACCC------CTTCTGGTTGCGCAATGATATTGGTTGGGT--GTAT-----TTATTTGCATGTTCA-TA---GCCCAGAT-AA---AATC---ATGTGAGTTTTCAATCC--AGTGT--TAACCTTAGTTTTTCATTTATTTTAGCCAACT-GAATTGTAAAAACTCAAATATA-TCTATATTGTGGAAGATC----TTGCCTATTTTTTAT--ATAGCTCTTTTTCTTACAAAA-TTCCTTGATAAATA--GTTTGAAAAATATTCTTTAAGGGCGTTGG---TGGTGTTATCTTGTTAAATA-----T-CT-AAACAcattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaaca----TA-TTTTTTAAA-AAATGGTATGTAAACAGGCT-AACAAAGGTGTGGTTTTTAAAATTCTCCGTTTAGGTCG-AACAATTGTCATGATTTCCTCGCTCTACGTTTCTAAA---------GTCGAAAGTTATATTTTCGGCAGAAAAAAATTAACATTCGTCATAGTTTAAAGTTATTCTGTTTAAATCAATTCTTAATTTATTCAATACTCCATTAATGAGTTACATTGGTGCCCATTTATTAT-ATTAGTCATTCAAAGTATGCATATGTTTTGGTGACTCTACTTGATACTAACATTCATT-GACTCTCATTAGTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTGA--TTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGAATTGTGTTGTTAAAATGCAACGAGAGAGGT-AGGTATGTCTGTACATGGCTTTATTTGGAGTTAAGTATATAACGTTGTGATATAGCTCGTTAAAGA-AGATA-AAAAGATATAGGGGGTAAAACAGAACTTTATT-AAAGTATGtagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|11 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattcctC-ACTGA-TAC-CA----------GTGAA-GT---GGTTTT-AAAAA-TCGCAC-A-ATAATC--------T--GTTAAG-CATTTT-AATG-TAAA-TGACTTTTNC-T---ATCAC-CTACGAC-TTGGT---------C-ATA-------GA---TCAa
gi|12 : --T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGCAA----G--AATATA-TCT---TCTTGGAAGATC----TC-CCTATTG----T--AAAGC---TATTCTAAC--AA-TTCCTTA-TAAA-A--G-TTGAAA
gi|13 : CCACTAGCCGCTCGATCTTAACATCCCTGGGATAGCAG--AAAAAAGCCTGA-----AGAGCCA-AGAAAAAtt
gi|14 : -TTCCTTG-TAAA-A--G-TTG-AAATTG-TCATTAA-G-----TG---TA----TA-CGTGTTAAA-A-----C-TG---------------------TTATTTTGAAAAAT-
gi|15 : ATAATGAGAC-GCCACTGA-TAC-CA----------ATGAA-GT---GGTTTTTAAAAAATCGCAC-A-
gi|16 : TAATCAACCTCTCT--CTTGAG-CATTTT-AATG-AAAA-TGATTT
gi|17 : GAAGTCGTCCAGAAG--CGTTTTATT----------
gi|2 : ccacagaaaatGAAGTCGTCCAGAAG--CGTTTTATT----------AAGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCTCGAC-AAG--CCCAAGATC---TA----AGAAAGGATGGTTTTCCAAACTGGT--------------------GGCTA-GGGGTATCATATGTAAATGCACTACTAGCCGCTC----TTA-CACCCCCGTAATATC--GAAAAAAAGCATGA-----AGAGCTG-AGAAAGAAA-------AAGTCGG-AGGACATTTG-T--AA-CATTC--------ATTATGTTGT--T-GATTGTGTATT--------AGTATCACTCTCAAGAATA-----TTTCACTC------ATAAGAGGAATGC-ACCGA-TAC--AT---------GTGAAAGT---GGTTTT-AAAAAATCGCACTATATAATCAGCTTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-AT---------TTATA-------AA---TTAGTATAT-TTAGAG-TT-ACTGAACT--GTATATGTCT-AC-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAA-A----CTGT-CAGTAAA-----ATA-TGTTAG---A--A----ATCA--TACTTA----CCC-CCTC-CCCCC------CTTC---TTGAAGTAT--------TTCTGT--AT-T-----TTATTTGCATGTCTACTA---GACCAGATAAATGTAATCA--AT----ATTTTCAATTT--A---TTGT-ACATT-GTATTTTA-----TTGAG-CC--T-G-ATTGTAA----T--AATATATTCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TATTCAAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TA-AAACAG-CTCAA--------TTGTTTTTTTAAAT-TCCGTTTA--TTGAAACA-TTTTCA-GATTTTTTC---------TTCCAAA---------ATTGAAAGT-ACATTTTT--CAG-AAAAAATTAACATTC-TC--AG-TTACA--TA-TCTG--CAACT--ATTATTAA---A---AATAC------AA--AGATGCATT-GT-----TTTATTATCATTTATCA--CAAAGTATG-ATGTGTTTTGGTG-CTCTGC---ATAATAAAAT--ATGAGA---TCATTACTT---------------ATATGTGC--TAAA--TTTTCATTTTTGAAAAAAAACGG-TG--TGTGTACTC-CATATCGGATTATG-TGTTAAAATGCA-------TGGTAAGGTATGTCT-TGCATAGTCTTTTTTG--GTT-AGTATATCA-GTTGT--TTTAGCT-ATTACAGAGAAATATATAATAT-TA--GGGT-AAACAGAACGTTTTTAAAAGTATG
gi|3 : ATGTAAATGCACTACTAGCCGCTA----TTAACATCCCCGGGATATCAGGGGGAAAAACCTGA-----ATAGCCG-AG----AAA----GAGAAGTCCG-AGGACATCT--TGCAA-CATTCgaactac
gi|3 : AAAACCCGCAC-A-ATAATCAGCCTTTCT--CTTGAG-TATTTTTAATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT------------T-ATAT------AA---TTAGTA----------GTT-GATAAACT--GTATATGACT-AT-T-TGTA-AATGT--GTTAG-TGG---CCTTT---GAAG-A----CTGT-CAG-GAA-----ATAATGTTAG---A--A----ATCA--TAC-----------CCCC-CCCCC------TTTC---TTGCAGAAT--------TTCTGT--AT-T-----TTATTTGCATGTC---TA---GACCAGAT-AAT-TAAT----AT-----TTTCCGATTCCTA---T--C-ACTTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--TATATA-TCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TTTTCTAACA-AA-TTCaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacccgcacaataatcagcctttctcttgagtatttttaatgtaaatgatttctacttacattacattacctttatataattagtagttgataaactgtatatgactatttgtaaatgtgttagtggcctttgaagactgtcaggaaataatgttagaaatcatacccccccccctttcttgcagaatttctgtattttatttgcatgtctagaccagataattaatattttccgattcctatcactttgtattttatttagcatgattgtaattatatatcttcttggaagatctccctattttaaagcttttctaacaaattc
gi|4 : atgtaaatgcactactagccgctattaacatccccgggatatcagggggaaaaacctgaatagccgagaaagagaagtccgaggacatcttgcaacattcaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT--GTGTGTGAGT-GTGTGTGTA-TATGTTTGTCA--TGA---CCTTT---GAAACA----CTGCACAT-GAC-----AAA-C-TTAGTGTATCATTTCATCA--TACTCATTTACCC-CCCCACTCTCACGTATCTTCA--TTGCAGAAT--------TTGTGTTGCT-TCTCGCTTATCTGTGTCTCGACTGTGTGGCTCAAG-AAC-TTATCTCCCT----CTTTTCAATTC--A---TGTT-ACCT--GTATTTTA-----TCTAG-CA--TTG-ATT-TAA----T--AATATA-TCT---TTTTGGAAGATC----TT-CT--CTT----T--AAAGCA--TTATCTTAC--AATTTTCTTG-TAAA-ATTT-TTGAAA--TG-TC-TTAAGG-----GG---TA----TA-CTTGTT-CA-A-----T-AG-AGGCAT-CT-TG--------TCGCGTTTATAAGT-
gi|5 : TTTA-----TTTAG-CA--T-G-ATTGTAA----T--GATATA-TCT---TCGTGAAAGATCGATCTC-CCTATTT----T--AAAGC---TATTATAAC--AA-TTCCATG-TAAA-A--G-TTG-AAATTG-TCATTAAGG-----GGGTATA----TA-GGTGTTAAA-A-----T-TG---------------------TTATTTTGAAAAAT-agattatgaa
gi|5 : -AAAGAG-CTCAA--------TTGTTTTTAAAA-T-TCCGTTTG--TCG-AACA-TTTTCA-GATTTTTTC---------CTCCAAATACATGTACGTCGAAAGT-ACATTTTT--CAGAAAatacatgggcaattaaatatttcttttcacaaaatggtatgtaaagagctcaattgtttttaaaattccgtttgtcgaacattttcagattttttcctccaaatacatgtacgtcgaaagtacatttttcagaaa
gi|6 : tttatttagcatgattgtaatgatatatcttcgtgaaagatcgatctccctattttaaagctattataacaattccatgtaaaagttgaaattgtcattaagggggtatataggtgttaaaattgttattttgaaaaatatacatgggcaattaaatatttcttttcacaaaatggtatgt-ATTGTAA----T--ATCATA-TCT---TTTTAGAAGATC----TC-CCCATTT----TTTAAAAC---TTTTCCAAC--AA-TTCCTTG-TAAA-AT-G-TGG--AATTG-TCATTAAGA-----AG---TA----TA-CTTATTAAA-A-----C-TA-TTACAG----------------G-TTTTGAAAAT-T
gi|6 : -----T-TGTAAACAG-CT-AA--------A-ATTTTTAAAAAT-TCCGTTTA--TTT-AACA-TTTTCA-GATTTTTatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatttgtaaacagctaaaatttttaaaaattccgtttatttaacattttcagatttttct
gi|7 : attgtaatatcatatctttttagaagatctccccattttttaaaacttttccaacaattccttgtaaaatgtggaattgtcattaagaagtatacttattaaaactattacaggttttgaaaattatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatAGTTGTCCACAAG--CGTTTTATT----------AGGCTAA--CAACG--AAAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATCT-ATA----AGAAAGGGCGGTTTTCCAAACct
gi|8 : taaggttaatcggcagtttttcgcctccagttttaattctatagtgcgacctagtatttccggtgaaattttgccatcgaatgttatcaagattccacagaaaatagA-CAACG--ACAAATTATTT----AAAGTTTGCCCCAAC-AAG--CCCAAGATC---TA----AGAAAAGACGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGGAAGTGCACTACTAGCCGCTC----TTAACATCCCCGG
gi|9 : AAGTTGTCCAAAAG--CGTTTTATT----------AG
blockSeqs : . . A . . . . T TATA ACCACTGCTAGGTTACTGTT T . A AGGG T . . AAAA G . TGC . . T T T . A A T . . T GCC . CA A A . T A T T C . . T . . . T A GAC GGTCATAGA T TAT G . . . GTG . TT G . . CA A T . T A G TGTATCATTTC . TCATTTA . A ACGTAT A . C TGCTTCTCGC A GACTGTGT A TG CTCCCTC ATTGT T . . . T . G T . GATC . . TT A A A T . . TT . A . A . GTA . . . TTAAAACAGCTCAATT A . . A . . . TACATGTAC . . A . . . C . . . C . A A . . A . . C T . . . . A A . GA . C . . . C TT . . . . T A . T . . C . . T . C G T T T . . . G T A
blockSeqs : . . A . . . . T TA . A GA T . . AAAG . . GT . G TGC . CA A . . . A . . T . . . . . . T A C ATTTATAAA T . . . . . T . . G . . A . . . T . G AA . TTA . . . . . C ATT A TACTA . T CAATA CTATC T . . . . . T . . . . . . . A . . . . T . A . A . . . . . TAGAGGCATCTTGTC A . . . . . . . . . .
blockSeqs : . . . . . . . T TA . . T . . . . AT A . . . C . . C . . . . . . . . C TATATAA . . T . . . . . A . . . A . . AA . . . . . . . G ATT G TA . C AT ATGTT T . . . . . T . . . . . . . T . . . . . . A . A . . . . . TTGTAAACAGCTAAA G . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . . T . . . . . . . . A . . . . . CTATTACAG A .
blockSeqs : . . . . . T . . . . . . . A . . . . . . . . . . . . . . CTGTT A .
blockSeqs : . T . . . . . . . T . . . . . . . . . . TTGTT A .
blockSeqs : . . .
blockSeqCons : ** ********** ** T* ***** ** T****** *** **** *** ** ***** **** TTGAACAGCTTT********************
originalCons : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGAAAAAGCCCGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTG-TGCAA-CATTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-AATGAACT--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ANA-TGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GACCAGAT-AAT-TAATC---AT----NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--AATATA-TCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-A-----T-TG-AAACAG-CT-AA--------TTGTTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGT-ACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
finalCons : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGAAAAAGCCCGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTG-TGCAA-CATTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-AATGAACT--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----ANA-TGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GACCAGAT-AAT-TAATC---AT----NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAAT------AATATA-TCT---TCTTGGAAGATC----TC-CCTATTT----T--AAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-ATTGAACAGCTTT--------------------GTTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGT-ACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTATGGAACTACCTTAAGCTGATAATTAAATAAATGTGCCAGTTAAAACTATGTACAGAGTGCTAATAGAATTTTTTTCCCCATTATATATGTATATCATAAGGTATATTGGCTGTCGTGT
Alignments
lowQualScore : 11 3333333333 11 11 2222 1 11 444444444 66666666666666666666 1 2222 1111 22222 1 33333 1 22222 1 33333333 2222 33333333 1 22222 222222 1111 1 5555555555555 1 111 1 11 1 1111 88888888888888888888888888888 2222 1 11 1 111 1 22 11 111 111 333333 1 1 22222222 44444444444 11 2222 1 1 222222 222 33333333 33333333333 11 111 1 11 55555555555 33333333333 11111 1111111 111 1111 1111 111 11 11 1 11111 111 1111 555555555555555555 11 1 1 1 555555555 555555555 1 11 1 11 1 11 1 11 11 3333333 222222 11 1 22222 1 11 1 1 222 11 11 222 555555555555555 11 11 11 1 11 1 1 33333333 1 1 11 1 1 11 1 1 1 1 11 1 1
lowQualScore : 11 0 5555555555 33 33 1111 0 33 3 222222222 88888888888888888888 5 1111 3 3333 2 55555 0 5555 55555 3 11111 3 44444444 1 1 5555 55555555 5 2 1 77777 888888 1 5555 0 9999999999999 3 5 777 0 5 0 8 8 0 1 11 8 8 8 8 0 3 3 7777 88888888888888888888888888888 7 3333 6 3 33 0 111 0 33 22 777 777 111111 0 0 77777777 2 00000000000 33 2 0 1111 0 0 0 888888 777 66666666 1 11111111111 2 11 2 777 0 0 77 00000000000 77777777777 88 66666 6 99 6 5 4444444 5 000 2222 5 0 77 2222 555 1 33 5 5 5 33 5 2 6 3 66666 111 4444 6 6 5 333333333333333333 1 5 33 0 0 0 333333333 333333333 3 88 7 5 88 5 1 88 5 88 1 88 1 3333333 999999 88 1 5 55555 5 1 88 5 5 111 1 1 88 66 000 1 444444444444444 88 88 1 88 5 88 5 5 22222222 5 5 1 88 5 1 5 88 1 5 1 5 5 1 1 5 77 5 1 1 5
lowQualScore : .. . .......... .. .. .... . .. . ......... .................... . .... . .... . ..... . .... ..... . ..... . ........ . . .... ........ . . . ..... ...... . .... . ............. . . ... . . . . . . . .. . . . . . . . .... ............................. . .... . . .. . ... . .. .. ... ... ...... . . ........ . ........... .. . . .... . . . ...... ... ........ . ........... . .. . ... . . .. ........... ........... .. ..... . .. . . ....... . ... .... . . .. .... ... . .. . . . .. . . . . ..... ... .... . . . .................. . . .. . . . ......... ......... . .. . . .. . . .. . .. . .. . ....... ...... .. . . ..... . . .. . . ... . . .. .. ... . ............... .. .. . .. . .. . . ........ . . . .. . . . .. . . . . . . . . .. . . . .
lowQualScore : 00 8 0000000000 22 88 2222 0 88 2 555555555 00000000000000000000 5 2222 2 1111 0 00000 0 5555 00000 3 33333 3 55555555 0 0 0000 55555555 5 5 0 00000 555555 0 8888 0 0000000000000 2 5 555 0 6 8 0 0 8 4 00 0 0 0 0 0 2 2 8888 88888888888888888888888888888 3 3333 7 3 88 0 000 0 88 55 555 555 222222 0 0 00000000 5 55555555555 88 5 2 2222 0 0 2 888888 555 22222222 0 55555555555 0 00 5 555 8 0 00 00000000000 22222222222 88 77777 7 22 7 7 4444444 7 000 1111 7 1 99 1111 777 0 66 0 7 7 66 7 0 7 5 77777 777 2222 7 7 7 999999999999999999 7 7 88 0 0 0 333333333 333333333 3 33 3 0 55 5 0 00 5 55 0 00 0 5555555 555555 00 0 0 55555 0 0 55 0 5 000 0 0 00 55 555 0 000000000000000 00 00 0 55 5 55 0 5 55555555 5 0 0 00 5 0 0 00 0 0 0 0 5 0 0 5 55 5 0 0 5
consensus : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGAAAAAGCCCGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTG-TGCAA-CATTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-AATGAACT--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----A-AATGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GACCAGAT-AAT-TAATC---AT----NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--AATATA-TCT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-AT-T-AA--ACAGCT---TTG-TTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGT-ACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
Reference ( family-2564 ) : GAAGTCGTCCAGAAG--CGTTTTATT----------AGGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATC--ATA----AGAAAGGGCGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGTAAATGCACTACTAGCCGCTC----TTAACATCCCCGGGATATCAGGAGAAAAAGCCCGA-----AGAGCCG-AGAAANAAA----GAGAAGTCGG-AGGACATCTG-TGCAA-CATTCCCTCACATANTATGTNGTAATAGACTGTGTATTGTTTTCATAGCATCACTCTCACGAANACATTTTTTCACTCGCCCATATAANGGGAA-GC-ACCGA-TAC-CAT---------GTGAAAGT---GGTTTT-AAAAAATCGCAC-A-ATAATCAGCCTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-GT---------C-ATAC------GA---TTAGTACAT-TTAGAGGTT-AATGAACT--GTATATGACT-AT-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAACA----CTGT-CAG-GAA-----A-NATGTTAG---A--A----ATCA--TACTCA----CCC-CCCC-CCCCC------CTTC---TTGCAGAAT--------TTNTGT--AT-T-----TTATTTGCGTGTCNACTA---GACCAGAT-AAT-TAATC---AT----NTTTTCAATTC--A---T--T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--AATATA-TCT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TNTTCTAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-AT-T-GA--ACAGCT---TTG-TTTTTAAAAAT-TCCGTTTA--TCG-AACA-TTTTCA-GATTTTTTC---------TTCCAAA---------GTCGAAAGT-ACATTTTT--CAGAAAAAAATTAACATTCGTCATAGTTTANAGTTATTCTGTTCAANTCAATTNTTAATTTATTCAATACTCCATTAATGAGNTGCATTGGTGCCCATTTATTATCATTNGTCATTCAAAGTATGCATGTGTTTTGGTGACTCTGCTTGATANTAANATTCATNAGACTCTCATTANTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTNATTTTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGGATTGTGTTGTTAAAATGCAACGAGAGNGGTAAGGTATGTCTGTGCATGGCCTTNTTTGGAGTTAAGTATATNACGTTGTGATNTAGCTCGTTANAGAGAGATATANAANATATAGGGGGTAAAACAGAACNTTNTTAAAAGTATG
gi|1 : TTCAGAAGAACGTTT-ATTTTCGCATGTAAAACTAAAGCAACGTGACAAAATACTCTCTGAAAGTTTGCCTCGACCGAGGACCCAAAA-CGAATACGAGAGAAAGGGCGGTTATCCAAAC
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcAGAAGAGGCCCAAGAATGAGAGCCGCAGAGACAAACTCTGAGAGGTCGGTACGACATCTGGTGTAAACACTCCCTCACATAATATGTGATAATAGACTGTGTATTGTTTTCATAGCATC-CTCTCACAAAGACATTTTTTCATTCGCCCATATAAAGGGAA-G--ATCGACTACTCATTCTCGGACAGTG-AAGTGGAGGTTCA-AAAAAAACGC-C-A-ATAATCAGCTTCTCTAGTTTGAGTCATTTT-AATGTTAAATTGCTTTCTACATTACATTACATTGC--TATT-GTGACAGTGTGC-ATACTAGTTAGAGAGTTAG-ACATATTAGAGGTTAAATGACCCTGGTATATGACTAAT-T-TATAGAGTGTG-GTCAGTTGGCTCCCTTTTGAGAAATATACCTTGT-CAG-GGAGAAGGA-AATGTTAG---A--C----ATCATTTACTCA----CCCGCCCC-CACCC------CTTCTGGTTGCGCAATGATATTGGTTGGGT--GTAT-----TTATTTGCATGTTCA-TA---GCCCAGAT-AA---AATC---ATGTGAGTTTTCAATCC--AGTGT--TAACCTTAGTTTTTCATTTATTTTAGCCAACT-GAATTGTAAAAACTCAAATATA-TCTATATTGTGGAAGATC----TTGCCTA--TTTTTTATATAGCTCTTTTTCTTACAAAA-TTCCTTGATAAATA--GTTTGAAAAATATTCTTTAAGGGCGTTGG---TGGTGTTATCTTGTTAAATATCT-AA--ACAcattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|1 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaG-TTTTTAAAATTCTCCGTTTAGGTCG-AACAATTGTCATGATTTCCTCGCTCTACGTTTCTAAA---------GTCGAAAGTTATATTTTCGGCAGAAAAAAATTAACATTCGTCATAGTTTAAAGTTATTCTGTTTAAATCAATTCTTAATTTATTCAATACTCCATTAATGAGTTACATTGGTGCCCATTTATTAT-ATTAGTCATTCAAAGTATGCATATGTTTTGGTGACTCTACTTGATACTAACATTCATT-GACTCTCATTAGTCGTTCAGAAGCAGTGAATATGTGCCTCAAAGTTTTTGA--TTTGGAAAGAAGCGGATGTTTGTGTACTCGCATATCGAATTGTGTTGTTAAAATGCAACGAGAGAGGT-AGGTATGTCTGTACATGGCTTTATTTGGAGTTAAGTATATAACGTTGTGATATAGCTCGTTAAAGA-AGATA-AAAAGATATAGGGGGTAAAACAGAACTTTATT-AAAGTATGtagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtggtttttaaaattctccgtttaggtcgaacaattgtcatgatttcctcgctctacgtttctaaagtcgaaagttatattttcggcagaaaaaaattaacattcgtcatagtttaaagttattctgtttaaatcaattcttaatttattcaatactccattaatgagttacattggtgcccatttattatattagtcattcaaagtatgcatatgttttggtgactctacttgatactaacattcattgactctcattagtcgttcagaagcagtgaatatgtgcctcaaagtttttgatttggaaagaagcggatgtttgtgtactcgcatatcgaattgtgttgttaaaatgcaacgagagaggtaggtatgtctgtacatggctttatttggagttaagtatataacgttgtgatatagctcgttaaagaagataaaaagatatagggggtaaaacagaactttattaaagtatga
gi|11 : aaggatgaatcggtagttttcgctttccggtttatgtttagagtcgacctactattttcgagtgaaatttttgcccatcgcattttatcaaagaattttcacagagaagttaagtttcttcagaagaacgtttattttcgcatgtaaaactaaagcaacgtgacaaaatactctctgaaagtttgcctcgaccgaggacccaaaacgaatacgagagaaagggcggttatccaaaccattctcaactgcgtagtaatgaagccttactatagtccttgctgaatgagttcagaacaagaagaggcccaagaatgagagccgcagagacaaactctgagaggtcggtacgacatctggtgtaaacactccctcacataatatgtgataatagactgtgtattgttttcatagcatcctctcacaaagacattttttcattcgcccatataaagggaagatcgactactcattctcggacagtgaagtggaggttcaaaaaaaacgccaataatcagcttctctagtttgagtcattttaatgttaaattgctttctacattacattacattgctattgtgacagtgtgcatactagttagagagttagacatattagaggttaaatgaccctggtatatgactaatttatagagtgtggtcagttggctcccttttgagaaatataccttgtcagggagaaggaaatgttagacatcatttactcacccgcccccaccccttctggttgcgcaatgatattggttgggtgtatttatttgcatgttcatagcccagataaaatcatgtgagttttcaatccagtgttaaccttagtttttcatttattttagccaactgaattgtaaaaactcaaatatatctatattgtggaagatcttgcctattttttatatagctctttttcttacaaaattccttgataaatagtttgaaaaatattctttaagggcgttggtggtgttatcttgttaaatatctaaacatagtatttgaataatctatcatcatgagaaaaggcaattattaataaaaacaaatattgatgtgacacctaaaagattatactaaggactctaaataattccttattttttaaaaaatggtatgtaaacaggctaacaaaggtgtgC-ACTGA-TAC-CA----------GTGAA-GT---GGTTTT-AAAAA-TCGCAC-A-ATAATC--------T--GTTAAG-CATTTT-AATG-TAAA-TGACTTTTNC-T---ATCAC-CTACGAC-TTGGT---------C-ATA-------GA---TCAa
gi|12 : --T-ACCTT-GTATTTTA-----TTTAG-CA--T-G-ATTGCAA----G--AATATA-TCT---TCTTGGAAGATC----TC-CCTA--TTG----TAAAGC---TATTCTAAC--AA-TTCCTTA-TAAA-A--G-TTGAAA
gi|13 : CCACTAGCCGCTCGATCTTAACATCCCTGGGATAGCAG--AAAAAAGCCTGA-----AGAGCCA-AGAAAAAtt
gi|14 : -TTCCTTG-TAAA-A--G-TTG-AAATTG-TCATTAA-G-----TG---TA----TA-CGTGTTAAA-AC-T-G------------TTA-TTTTGAAAAAT-
gi|15 : ATAATGAGAC-GCCACTGA-TAC-CA----------ATGAA-GT---GGTTTTTAAAAAATCGCAC-A-
gi|16 : TAATCAACCTCTCT--CTTGAG-CATTTT-AATG-AAAA-TGATTT
gi|17 : GAAGTCGTCCAGAAG--CGTTTTATT----------
gi|2 : ccacagaaaatGAAGTCGTCCAGAAG--CGTTTTATT----------AAGCTAAA-CAACG--ACAAATTATTT----AAAGTTTGCCTCGAC-AAG--CCCAAGATC---TA----AGAAAGGATGGTTTTCCAAACTGGT--------------------GGCTA-GGGGTATCATATGTAAATGCACTACTAGCCGCTC----TTA-CACCCCCGTAATATC--GAAAAAAAGCATGA-----AGAGCTG-AGAAAGAAA-------AAGTCGG-AGGACATTTG-T--AA-CATTC--------ATTATGTTGT--T-GATTGTGTATT--------AGTATCACTCTCAAGAATA-----TTTCACTC------ATAAGAGGAATGC-ACCGA-TAC--AT---------GTGAAAGT---GGTTTT-AAAAAATCGCACTATATAATCAGCTTCTCT--CTTGAG-CATTTT-AATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT-AT---------TTATA-------AA---TTAGTATAT-TTAGAG-TT-ACTGAACT--GTATATGTCT-AC-T-TGTA-AATGT--GTCAG-TGG---CCTTT---GAAA-A----CTGT-CAGTAAA-----A-TATGTTAG---A--A----ATCA--TACTTA----CCC-CCTC-CCCCC------CTTC---TTGAAGTAT--------TTCTGT--AT-T-----TTATTTGCATGTCTACTA---GACCAGATAAATGTAATCA--AT----ATTTTCAATTT--A---TTGT-ACATT-GTATTTTA-----TTGAG-CC--T-G-ATTGTAA----T--AATATATTCT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TATTCAAAC--AA-TTCCTTG-TAAA-A--G-TTGAAAATTG-TCATTAAGG-----GG---TA----TA-CTTGTTAAA-AT-TAAA--ACAGCTCAATTG-TTTTTTTAAAT-TCCGTTTA--TTGAAACA-TTTTCA-GATTTTTTC---------TTCCAAA---------ATTGAAAGT-ACATTTTT--CAG-AAAAAATTAACATTC-TC--AG-TTACA--TA-TCTG--CAACT--ATTATTAA---A---AATAC------AA--AGATGCATT-GT-----TTTATTATCATTTATCA--CAAAGTATG-ATGTGTTTTGGTG-CTCTGC---ATAATAAAAT--ATGAGA---TCATTACTT---------------ATATGTGC--TAAA--TTTTCATTTTTGAAAAAAAACGG-TG--TGTGTACTC-CATATCGGATTATG-TGTTAAAATGCA-------TGGTAAGGTATGTCT-TGCATAGTCTTTTTTG--GTT-AGTATATCA-GTTGT--TTTAGCT-ATTACAGAGAAATATATAATAT-TA--GGGT-AAACAGAACGTTTTTAAAAGTATG
gi|3 : ATGTAAATGCACTACTAGCCGCTA----TTAACATCCCCGGGATATCAGGGGGAAAAACCTGA-----ATAGCCG-AG----AAA----GAGAAGTCCG-AGGACATCT--TGCAA-CATTCgaactac
gi|3 : AAAACCCGCAC-A-ATAATCAGCCTTTCT--CTTGAG-TATTTTTAATG-TAAA-TGATTTCTAC-TTACATTACATTAC--C-TT------------T-ATAT------AA---TTAGTA----------GTT-GATAAACT--GTATATGACT-AT-T-TGTA-AATGT--GTTAG-TGG---CCTTT---GAAG-A----CTGT-CAG-GAA-----ATAATGTTAG---A--A----ATCA--TA----------C-CCCC-CCCCC------TTTC---TTGCAGAAT--------TTCTGT--AT-T-----TTATTTGCATGT---CTA---GACCAGAT-AAT-TAAT----AT-----TTTCCGATTCCTA---T--C-ACTTT-GTATTTTA-----TTTAG-CA--T-G-ATTGTAA----T--TATATA-TCT---TCTTGGAAGATC----TC-CCTA--TTT----TAAAGC---TTTTCTAACA-AA-TTCaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaacccgcacaataatcagcctttctcttgagtatttttaatgtaaatgatttctacttacattacattacctttatataattagtagttgataaactgtatatgactatttgtaaatgtgttagtggcctttgaagactgtcaggaaataatgttagaaatcatacccccccccctttcttgcagaatttctgtattttatttgcatgtctagaccagataattaatattttccgattcctatcactttgtattttatttagcatgattgtaattatatatcttcttggaagatctccctattttaaagcttttctaacaaattc
gi|4 : atgtaaatgcactactagccgctattaacatccccgggatatcagggggaaaaacctgaatagccgagaaagagaagtccgaggacatcttgcaacattcaatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT--GTGTGTGAGT-GTGTGTGTA-TATGTTTGTCA--TGA---CCTTT---GAAACA----CTGCACAT-GAC-----A-AAC-TTAGTGTATCATTTCATCA--TACTCATTTACCC-CCCCACTCTCACGTATCTTCA--TTGCAGAAT--------TTGTGTTGCT-TCTCGCTTATCTGTGTCTCGACTGTGTGGCTCAAG-AAC-TTATCTCCCT----CTTTTCAATTC--A---TGTT-ACCT--GTATTTTA-----TCTAG-CA--TTG-ATT-TAA----T--AATATA-TCT---TTTTGGAAGATC----TT-CT----CTT----TAAAGCA--TTATCTTAC--AATTTTCTTG-TAAA-ATTT-TTGAAA--TG-TC-TTAAGG-----GG---TA----TA-CTTGTTCAA-
gi|5 : TTTA-----TTTAG-CA--T-G-ATTGTAA----T--GATATA-TCT---TCGTGAAAGATCGATCTC-CCTA--TTT----TAAAGC---TATTATAAC--AA-TTCCATG-TAAA-A--G-TTG-AAATTG-TCATTAAGG-----GGGTATA----TA-GGTGTTAAA-AT-T-G------------TTA-TTTTGAAAAAT-tagaggcatcttgtcgcgtttataagtagattatgaa
gi|5 : -T-AA--AGAGCTCAATTG-TTTTTAAAA-T-TCCGTTTG--TCG-AACA-TTTTCA-GATTTTTTC---------CTCCAAATACATGTACGTCGAAAGT-ACATTTTT--CAGAAAatacatgggcaattaaatatttcttttcacaaaatggtatgtaaagagctcaattgtttttaaaattccgtttgtcgaacattttcagattttttcctccaaatacatgtacgtcgaaagtacatttttcagaaa
gi|6 : tttatttagcatgattgtaatgatatatcttcgtgaaagatcgatctccctattttaaagctattataacaattccatgtaaaagttgaaattgtcattaagggggtatataggtgttaaaattgttattttgaaaaatatacatgggcaattaaatatttcttttcacaaaatggtatg-ATTGTAA----T--ATCATA-TCT---TTTTAGAAGATC----TC-CCCATTTTT----TAAAAC---TTTTCCAAC--AA-TTCCTTG-TAAA-AT-G-TGG--AATTG-TCATTAAGA-----AG---TA----TA-CTTATTAAA-AC-T--ATTACAG-------G--TTTTGAAAAT-T
gi|6 : -T-AA--ACAGCT---AAAATTTTTAAAAAT-TCCGTTTA--TTT-AACA-TTTTCA-GATTTTTatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatttgtaaacagctaaaatttttaaaaattccgtttatttaacattttcagatttttct
gi|7 : attgtaatatcatatctttttagaagatctccccattttttaaaacttttccaacaattccttgtaaaatgtggaattgtcattaagaagtatacttattaaaactattacaggttttgaaaattatgataaacaaaactttatgtgaaccaaagaatttgttttaaaaaaatgatttgAGTTGTCCACAAG--CGTTTTATT----------AGGCTAA--CAACG--AAAAATTATTT----AAAGTTTGCCCCGAC-GAG--CCCAAGATCT-ATA----AGAAAGGGCGGTTTTCCAAACct
gi|8 : taaggttaatcggcagtttttcgcctccagttttaattctatagtgcgacctagtatttccggtgaaattttgccatcgaatgttatcaagattccacagaaaatagA-CAACG--ACAAATTATTT----AAAGTTTGCCCCAAC-AAG--CCCAAGATC---TA----AGAAAAGACGGTTTTCCAAACTGGTACCACTGCTAGGTTACTGTTGGCTATGGGGTATCACATGGAAGTGCACTACTAGCCGCTC----TTAACATCCCCGG
gi|9 : AAGTTGTCCAAAAG--CGTTTTATT----------AG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTATGGAACTACCTTAAGCTGATAATTAAATAAATGTGCCAGTTAAAACTATGTACAGAGTGCTAATAGAATTTTTTTCCCCATTATATATGTATATCATAAGGTATATTGGCTGTCGTGT