lowQualScore : 11111111111111
lowQualScore : 888888888888888 1 22222222 2 111111 22222222222222222222222222222222222 2222222222 11 22222 888888888888888888888888888888888888888888888 11 4444444444444444444444444444444444444444444444 3 111111 444444 222 11111 11111 11111 22 44444444444444 333 1111111 111111 33 11 1111 1 222222222 111111 111 111 22222 1111 33333 11111111111111 11 3 1 111 6666666666666666666666 1 33333333333333 1 2222 1 11 1 4 4 2222 222 33333 4444444444 222 33 3 33 1 22 11 444444 2 1 555 55555555 3333 333 1 99999 99999999999999999999999999999999999999999999999999 333 3 333333333333 2222222222222222 11 1 4 77777
lowQualScore : 6 999999999999999 0 6 44444444 3 000000 66 5555 88888888888888888888888888888888888 888 1111111111 00 5 00000 999999999999999999999999999999999999999999999 5 5 5 77 5 0 6666666666666666666666666666666666666666666666 9 77 5 4 4 4 4 66 6 4 666666 4 4 222222 4 444 0 0 55 6 99999 3 777 00000 22222 22222 0 5 00 5 3 22222222222222 0 666 8888888 111111 6 7 00 6 6 55 2222 1 777777777 1 99 5 555555 444 444 11 6 6 11111 99 4444 77777 0 00000000000000 88 0 0 999 3 0 2 777 0000000000000000000000 0 55555555555555 0 1111 0 33 0 77 0 0 1111 333 33333 3333333333 3 2 8 888 00 0 55 2 0 55 8 33 3 000000 6 4 6 3 7 3 333 00000000 1 6666 888 5 9 11111 11 5 0 77777777777777777777777777777777777777777777777777 8 111 0 5 5 0 8 3 0 33 8 0 1 444444444444 6 8 8888888888888888 33 2 0 7 0 4 6 66666 6
lowQualScore : . ............... . . ........ . ...... .. .... ................................... ... .......... .. . ..... ............................................. . . . .. . . .............................................. . .. . . . . . .. . . ...... . . ...... . ... . . .. . ..... . ... ..... ..... ..... . . .. . . .............. . ... ....... ...... . . .. . . .. .... . ......... . .. . ...... ... ... .. . . ..... .. .... ..... . .............. .. . . ... . . . ... ...................... . .............. . .... . .. . .. . . .... ... ..... .......... . . . ... .. . .. . . .. . .. . ...... . . . . . . ... ........ . .... ... . . ..... .. . . .................................................. . ... . . . . . . . .. . . . ............ . . ................ .. . . . . . . ..... .
lowQualScore : 0 222222222222222 0 7 22222222 6 222222 11 6666 88888888888888888888888888888888888 888 9999999999 77 7 00000 333333333333333333333333333333333333333333333 7 0 0 44 0 4 6666666666666666666666666666666666666666666666 0 99 6 4 4 4 4 11 7 4 444444 4 4 000000 4 111 8 8 00 7 11111 6 000 00000 55555 55555 4 0 66 0 2 99999999999999 1 000 3333333 666666 7 0 00 7 7 88 1111 0 000000000 0 22 2 333333 000 000 88 7 7 55555 88 2222 00000 8 77777777777777 00 3 7 222 2 0 0 555 8888888888888888888888 0 22222222222222 0 2222 0 88 0 33 0 0 0000 333 33333 8888888888 2 5 8 000 66 2 88 8 8 00 0 88 2 000000 0 0 7 7 3 3 777 77777777 2 2222 000 5 2 00000 88 6 8 44444444444444444444444444444444444444444444444444 0 000 8 6 0 8 0 2 2 00 0 8 8 666666666666 4 0 8888888888888888 88 0 0 3 7 0 0 00000 0
consensus : NNGTATAAAAATTGCTTGTGC------AAAGA-ACTATA-TAGGGTA--------TGCTTGCTTGTAGGCCCC-C----TTCATAGC--TG-AATTT-------TAAACCTT----AANTAAAAG---TT--GATGA---AAT----------TTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCAT-AA-TGTCTT-ATTT-TTTCA--T-AAGATTT----TG---A--A---AA----A------------ATATTTTG-TGCTTGT-AG-TGT-AAA-GG--GGTCAA-TNAA---GT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAAC-GTGA---TTTTGACATCT--TTTAGTG-----GAC-ATTTT---AA-----AC-----ACTTGC-----GATTTCT-TGAAT-CAAGATCGATATTCTT----------ACACACC---GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAANCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTC-ATA-CTT---CCGTGTCTAT----TTGTATT---GCCGTACACTGGACTACGTC-A---T--GATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTCGT-CGTGAAAA---TACTTTAAA-A--CTCACTA--------TAAT-TATAT-TTTGTA-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAGA-CCCGA-GTGCAATCAGA-A-TGTGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGCG-CGGATAAAGACTGTT-TGTAAGTT-AAATTT-ACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCNCCGAGTTTATGTAGATATTGCGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA--CTGTTGTACTCGCTAAGCTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATATNTG---------TGCAAT--AACTATN-TGATTCGGAAT-AAAAC-ATATGTGACGTCATTT-GTCGGCTA-ACAGTT-TAGTATGGAACGCCG-TAC-GTGTAGAAAATACG-AATT---TC--AGTGT-ATAC--TTCATTACCTGCTA-TTTGATTTATTACGTATTTTTAAANAGCTTAGACATATTAAATAAG--AAAATTGTAGTTTAGATTACAGGAGCATTA
Reference ( gi|1 ) : AAGTGTAAAAAT-GTTTGTG-------AAAGA-ACTATA-TAGGGTA--------TGCTAGCTTGTAGGCCCC-C----TTCATAGC--TG-AATTT-------TAAACCTT----AATTAAAAG---CT--GATGA---AAT----------TTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCAT-AA-TGTCTT-ATTT-TTTTA--TAAAAATTT----TG---A--A---AA----A------------ATATTTTG-CGCTT-T-AG-TGT-AAA-GG--GCTTAA-TAAA---GT-CACCT-TGGTTACAGAAAAGTGTCCCAACAAAC-GTGAT--TTTTGACATCT--TTTAGTG-----GAC-ATTTT---AA-----AC-----ACTTGC-----GATTTCT-TGAAT-CAAGATCGATATTCTT----------ACACACCT--GTAAA------AATATCAA---A-TGTTA-AAATATGCCAT-GC-AAA--ATATCTATCTTGT----TCAAAAAGTCGCACA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATTGACGTC-ATA-CCT---CCGTGTCTAT----TTGTATT---GCCGTACACTGGACTAGATCTATATT--GATGAATGCACATGCGTGATCAATGTTGCGTTGGAAATATAATTCAT-CGTGGAAA---TACTTTGAACA--CTTACTA--------TAAT-TATATATGTGTA-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAGGAAATCCGTAGAACCCGATGTGCAATCAGAAATTGTGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGCGGCGGATAAAGACTGTTTTGTAAGTTTAAATTTTACTTCAAACATTGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAACTGTTTGCGATCACCGAGTTTATGTAAATATTACATACAGACCGTACGTGTTTTACAACGTTGTTT-ACAAGTCTTGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA--TTGTTGTATTCGCTAA-C-TCGTGGTAAAATAACCTAGCTGTTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTATA-TGATTCGGAAT-AAAACTATATGTGACGTCATTT-GTCGGCTATACAATT-TAGTATGGAACACCGTTAC-GTGTAG-AAATACG-ATTT---TC--AGTGTCATAT--TTCAGTACCTGCTATTTTGATTTATTACGTATTTTCAAAAAGCTTAGATATATTAAAT-AGTTAAAATTGTAGTTTAGATTACAGGAGTATTA
gi|10 : GTATAAAAATTGCTTATGCTATTTGAAAGATATTACACTA---TA--------TATT-GCTTGTAGACCCC-A----T-CAAAGC--TG-AATTT-------TATTCCTA----AAG-AAAAG---CT--GATGA---AAT----------GCA-TATGAGATTGATCACATTACGTCT----------TCAACACCTTCCCAAATGAG----------TTCAT-GA---TCAC-ATTTATATTG--TTCAATTTTTATGTG---ACTA---AA----ACCC---------ATGCTTGG-GGTTT-TAAG-CG--GAG-GA--GATCAAATAA----GT-CACCT-TGGTTACAGAAAAGTGTCTTAA
gi|8 : AAAAT----TGT--------AAAGA-ACTATA-TAGGGTA--------AGCTTGCTTGTAGGCCCC-C----TTCGTAGC--TT-AATTT-------TAAACCTT----AA-TAAAAG---TT--GATGA---GAT----------TTA-TGTGAG-TT-----CATTA----TAAAGACATTAT---------------TACATTATTAATATTTCAT-AA-TGTCTT-A--T-TTTTA--T-AAGATTT----TG---A--AAATAA----A------------ATA-TTTG-CGCTTGT-AG-TGC-AGG-TG--ACTTAA-TAAA---TT-CACCT-TGG-AACAGAAAAGTGT-CTAA-AAAC-GTAA---TTTTGATATCT--TTT-GTG-----GAC-ATTT
gi|6 : aagcttcatcctttcgtaattctatacatgatgtttaaaatatataactaaatttaccGTGT------AAAGG-ACTATA-TAGGGTATCATATGCTGCTTGCTTGTAGG--CC-C----TTCAT------------------------CCTC----GATTAAAAG---TT--GGTGA---AATAAAGATGAAATTA---TGAG-TT-----TATCG---------------T---------------TGCA----------TTTCTAAA-TGTCTT-A-TT-TTTCA--T-AAGATTT----TG---A--A---AAAAACA------------ATA----G-TGCTTGT-AG-TGT-AAC-GG--GGTC-A-TTAA---GT-CACCT-TGGTTACAGAGAAGTGTC----TAAAT-ACGAA--TTTTGACA-CC--TTTAGTG-----GAC-A-TTT---AA-----A
gi|25 : gattatataaaaagggaattagaattaatttacatcacttatatcataaaaaaactcagtgaatacaaggtagaacttattcagatctaaaaataatggtgaaaattttgttctatgttcggtcccaaatagtcccacttaacaaagaatgaatgcgtaacattctactcctaattttaatcttacatctaactctaattttacatgttactttaaaattatacttaaaaaaaggtttaactttacacatcacgatcttaaaGA-ACTATA-TAGTGTA--------TGCTTGCTTGTAGGCCCC-C----TTCATAGC--
gi|2 : A-TAGGGTA--------TGCTTGCTTGTAGGCCCC-C----TTCATAGC--TG-AATTT-------TAAACCTT----AAT-AAAAG---TT--GATGA---AAT----------TTA-TGTGAG-TT-----CATTA----T----------T----------------GCA----------TTCAT-AA-TGTCTT-ATTT-TCATAATTAAAAA--------A---A--A---AA----A------------ATATTTTG-TGCTTAT-AG-CGT-AAA-GG--GCTTAA-TA-----GT--AGAT-TGGGTTCG---AAGTGTCT-AA-AAAC-GTGAT--TTT-GACATCT--TT-AGTG-----GGC-ATTT----AA-----AC-----ACTTGC-----GATTTCT-TGA-T-CA-GATCGATATT--T----------ACAC-CCC--GTAAA------AATATCAA---A-TGTTA-AAATATGC-ATCGCCAAA--ATATCTATCTTGTCGTATCGGAAAGTCGTAC------------GGCA--A----------CGATAAACACGGCTCAAACTCTGACTTCTCAATAATT---GCATTGACGT--ATA-CT-----CGTGTCTAT----TTGTAT----GCCGTACACTGGACTACAT---------GATGAATGCACATG-GTGATCAATGTTGTGTTGGAAAT-TAATTCAT-CGTGAAAA---TACTTTTAA-A--C--ACTA--------TAAT-TATTT-TGTG-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAT-GAG-AAATCCGTAGA-CCCGA-GTGCAACTAGAAAATGTGTGGTGATCATTG-----TTGTTTT----------TT-CTTTGC-GATTACGATAATTAGGTG-CGGATAAAGACTGTGGTATAG--TTAAATT--ACTTCAAACAC-GATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGAGAATGTA--TAA-TCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCTCCGAGTTTATGTAAATATTACATACAGA-CGTACGTG-TTTAAAACGTTATTTAACAAG---TGCGGTTTGTTGCATGTACTAGCC-----------ACTGCAAAAATATA---TGTTGTATTCGCTAA-CTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCT-AATTTATATCATTCGAAT---TAGGCTAT-TATTCG---------TGCA----AACTAAT-TGATT-GGAAT-AAAACTATGTG-GATAT-A-TT-GT-GGCTA-GCATTTATAGTATGGAACACCG-TAC-GTGTAG-AAATACG-AATT---TCGAGGTGT-ATAC--TTC
gi|23 : A-TAGGGTA--------TACT------T--GCCTC-T----TTAATAGC--TA-TATTT-------TAATCCTG----AATGAAAA----TT--AATGA---AAT----------gattttaggcaatttctaataagttaacgggataatcacaaaaattaa
gi|5 : GCTTGCTTGTAGGCCCC-C----TTCATAGC--TG-AAATT-------TA------------------------------------------------TA-TG--AA-TT-----TATTA---------------C---------------TACA----------TTAAT-AA-TGTCT---TCT-TTTTA--T-AAGATTT----TG---A--A---AA----AC-----------ATATTTTG-TGCTTGT-TG-TGT-AAA-GG--GGTCAA-TTAA---GT-CACCT-TTATAACAGAAAAGTGT-CTAA-AAAT-GTGA---TTTTGACATC---TTTAGTG-----GAC-ATTTT---AA-----ACACTTTACTTGC-----GATTTCT-TG-AT-CAAGATCGATGT--TT----------ATACACC---GTAAATATATCAATATCAA---A-TGTTA-CAATCTG-CAT-GC-AAA--ACATCTATCTTGT----TCAAAACGTTGCAAA--TATCTAACTGGTG--AAAAAAACTTTCGAAAAATGCA---CA---TTT---TCCTCCAAAACTTTCGCATTGACGTC-ATA-CCT---TTGTG--TAG----TTGTA-T---GGCGTACATTGG---------ATGTTAAGATGAATG--CATG-GTGATCAATGTTACGTTGGATATATAGTTTGT-CATGAAAA---TACCTTAAA-A--C-CACTA--------TGAT-TATAT-TTTGTA-------TT-ACAT----TATGTCCACA-AT--GGTTTGAAATGAAGAAATCTGTAGA
gi|11 : CTTGTAGGCCCCTT----TTCATCCT--CG-A-----------TAAAAGTTGGTGAAATAAA---------GATGA---AAT----------TTA---TGAG-TT-----TATCG---------------T---------------TGCA----------TTCAT-AA-TGTCTT-A--T-TTTCA--T-AAGATTT----TG---A--A---AAAC--A------------ATA----G-TGCTTGT-AG-TGT-AAC-GG--GGTCAA-TTAA---GT-CACCT-TGGTTACAGAGAAGTGTCTAAAT--AC-G-GAA--TTTTGACA-CC--TTTAGTG-----GAC-ATTTC---AA-----cacga
gi|4 : ttgcTTGTAGGCGCT-CAGATTTCATAGCGTTGTAAGTTACCACTATAAAATTT----ACATAAAAGATTCTCGAATGACAGAAC----------TTAATGTGAG-TTT----CATTA----T----------T----------------GCA----------TTCAT-AACTGGCTTGATTT-TT--A--TAAGA---T----CA---A--AC--AA----ACATATATAGTGTATATTTTGACGCTTAT-AGGTGTTAAATGGCAGCATAA-TAAGAGGGTGTACCTGTTGTTACAGAAAAGTGGTCTAATAATCGGTGA---TTTTGACATCTAAAATAGTGTGAACAAT-ATATT---AAGGAGGAC-----AGATGCAGTAGGTTTTCTGTAGATATGAGA---ATACTCTCTCATTTAAAAACACGCCTTATTAAA------AATTTCAA---A-TGT
gi|14 : -TGTCTT-A--T-TTTCA--GAAGAA--T----TGAAAA--A---AA----A------------ATATTTTG-TGCTTGT-AG-GGT-AAA-GG--GGTCAA-TTAC---GT-CACCT-TGGTTACAG--AAGTGT-CTAAAAAAC-GCAA---TTTTGACATCT--TTT-GTA-----GCC-ATTTTGTGAG-----AT-----GCTTGA-----G--TTC--TGAAT-AAAaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggtgtgatgaattgtattatacaattcagtgttgaaaaattgctttaaaacttactacgtgagagtaatatatattttgtaaaaatattcagcattgcatatgttcacgcatgagtttaaaaagaa
gi|7 : AAACTT----T-------A---AT----G------------ATATATTG-TGCTTGT-AG-TGT-GAA-TA--GGTTAT-TTGG---TT-CACCT-TGGTTACAGAAAAATGT----GTAAA--GTCATACTATTGACATCT--TTAAG-------AACGATTTT---AT-----GT-----ACTTGC-----GATTTCT-TGA-T-CAAGATCAATATTC------------ACACACC---------------ATA-------------A-AAATCTGC-AT-GA-AAAGAATATTTATCTTGT----TCAAAACGTCACAGA--TA----ATCGGTG--AAAAAAGCCTTCGAAAGATATG---AA---CTT---TCTTCCATAACTTACATATCGACGTC-ATA-CTT---CCGTGTACATGTAGTTGTA-T---ACCGTACATTGTAC---GTC-A---T--GATGAGTG--CATG-GTTATCAATGTTGTATTGaccacgttgtcgttgaactgtacatgtt
gi|3 : tttAC-GTGAT--TTT-GACATCT--TT-AGTC-----AAC-ATTTT---AA-----AC-----ACTTGC-----GATTTCT-TGA-T-CA-GATCGATATT--T----------ACACACC---GTAAA------AATATCAA---A--GTTAGAAATATGC-AT-GC-AAAG-ATACCTATCTATT----TCAAA--GTCGCAGAGATATCTAAACCGCG--AAAAAACCTTTCGAAAAAC------CA---TTT---TCCTCCATATCTTTCGCATTGACGTC-ATA-C-T---CCGTGTCTAT----TTGTAT----GCC-TACACTGGACTACAT---------GATGAATGCACA-GTGTGATCAATGTTGCGTTG-AAATATAATTCATTCGTGAAAA---TACTTT--ACAAGCT-ACGA--------TAAT-TATATATTTGTA-------TC-ACAT----TGTGTTCACG-AT--GTTTTGAAA-TGAGAAATCCGTAGA-CCCGA-GTGCAATCAG------TGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGCG-CGGATAAAGACTGTT--GTAAGTT-AAATTT-ACTTCAAACATCGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAGATATTGCGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCCTTATATATACAACTGCAAAAATATA---TGTTGTATTCGCTAA-CTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAAGCTATATATGTG---------TGCA----AACTATATTGATTCGGAATAAAAAC--TATGTGACATCATTT-GTCAGCTA-ACAATT-TTGTATGGAACACCG-TAC-GTGTAGAAAATATG-AATT---TC--AGTGTCATATTCTTCATTACCTGCTA-TTTGATTTATTACGTATTTTTAAAAAGTTTAGACATA
gi|24 : --TTTTGACATCT--TT-AGTG-----GAC-ATTGT---AA-----AC-----ACTTGC-----GATTTCT-TG-AT-CAAGATCGAa
gi|18 : --TTTAGTG-----GAC-ATTTT---AA-----AC-----ACTTGT-----AATCTCT-TG-AT-CAATATCGATAT--TT----------ACACATC---GTAAA------TATATCAA---A-TGTTA-AAGTCTG-CAT-GC-AAA--ATATCTATCTTGT----TCAA
gi|17 : tcTTCTT----------ACACATC---GTAAA------TATATCAACTAACTGTAA-AAATCTGC-AT-GC-AAA--ATTTCTATCTTCT----TTAAAACGTCGCCAA--TACTTAACCGGCGAAAAAAAACCTTTCAGATAACA
gi|16 : taaatGT----TCAAAACGTCGCGCA--GAT--AACCGGTG--AAAAAATCTATCGAAAAATATG---CA---TTT---TCCTCCATAACTTTCATAGCGCCGTC-ATA-CTA---CCGTG--TAG----TTGTA-T---GCCGTACGCTGTAC---GTC-A---T--GATGAATG--CATG-GTTATCAATGTAGTGTTGagaa
gi|4 : ttgCGTCCATAGCCTGCACCGTGTCTAT----TTGCGTCTAAGCCGTACA
gi|27 : ttgtaggcgctcagatttcatagcgttgtaagttaccactataaaatttacataaaagattctcgaatgacagaacttaatgtgagtttcattattgcattcataactggcttgatttttataagatcaaacaaacatatatagtgtatattttgacgcttataggtgttaaatggcagcataataagagggtgtacctgttgttacagaaaagtggtctaataatcggtgattttgacatctaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaacCTATAT---GATGAATGCACATG-GTGATCAATGgcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggtgtgatgaattgtattatacaattcagtgttgaaaaattgctttaaaacttactacgtgagagtaatatatattttgtaaaaatattcagcattgcatatgttcacgcatgagtttaaaaagaa
gi|4 : GTGTGATGAAT--TGTATT----ATACAATTCAG-TGTTGAAAAATTGCTTTAAA-A--CTTACTACGTGAGAGTAATATATAT-TTTGTAAAAATATTCAGCATTGCATATGTTCACGCATGAGTTTAAAAA-GA
gi|12 : ttgtaggcgctcagatttcatagcgttgtaagttaccactataaaatttacataaaagattctcgaatgacagaacttaatgtgagtttcattattgcattcataactggcttgatttttataagatcaaacaaacatatatagtgtatattttgacgcttataggtgttaaatggcagcataataagagggtgtacctgttgttacagaaaagtggtctaataatcggtgattttgacatctaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttgTGCAATCAGACATTGTGTG---ATCATTGCATTGTTGTTTTAATGTTTATTTTTCTTCGCCGATCACGATCATTAGGCG-TGGATAAAGACTGTT--GTAAGTT-AAATTT-ACTTCAAACATCGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGATATTGTATTTAAATCCTATATTATATATTTCTTAAAAAGCTGTTTGCGATa
gi|13 : TT----------TTTCTTCGCCGATTACGA
gi|20 : tctttttaaaatgttctctaaaattatgccagtttaacaatatcaatcatgctattcggaataaaactatgtaatgtaatttggcgtctatacatctagtatggaacgccgtaattgtagaaaatatgaattttaattaatgtaatatttttatagcttctatgtaattcgtattgATTACGAT---TAGG-AGCGGATAAAGGATGTT--GTAAGTT-ACATTT-ACTTCAAACATCGAT-GATTGAATAGACAAGAGTCAATAACACttaa
gi|19 : tTTGTAAGTT-AAATTT-ACTTCAAACATCG-TTGATT-AATAGAAAATATTCAAGAACACTTTTAGATGATAATGTA--CAAATCCTATA-----TATTTCTTAAAAAGCTGTTTG
gi|26 : TACAAACCGTACGTGTTT-ACAGCGTTGTTT-ACAAGT
gi|9 : TGTATATACTAGCC-------TACAACTGCAAAAATACA--T-GTTGTACTCGCTAAAT-TCGGGGTAAA-TAACCT---T-TTTAAGAAGTTCTCTAAAAGTATATCATT-GTAACAATAGGCTATATGTGTGCATAAAATTTACAATTGCACTAT--TGATTCGGAAT-AAAAAACTATGTGACGCCATTT-GTTGGCTA-ACAGTT-TAGTATGGA------------------AAATGCG-A----------------ATTC--TTCATTACCTGCTA-TTTGATTTATTAATTATTTTTAAATAGCTTAGACATATTAAATAAG--AAAATTGTAGTTTAGATTACAGGAGCATTA
gi|15 : CTGCAAATATGAAAGCTGTTGTACTCTCTAAGT-TCGTGGTAAGCTAACCT---T-TTTAAC--GTTCTCTCGAACT-------------------------T-TTTG---------TG--AT-------TT-TGATTCGGAAT-AAAA--ACA----ATGTCATTTTGTCGTCTA-ACAGTT-TAGTATGGAACGCCAGTACTTTGTAGAAAATA-G-AATT---TC--AATGT
gi|13 : tCTTTTTAAAATGTTCTCTAAAATTATGCCA---GT-T---TA-ACAATAT----------------CAAT-----CATG-CTATTCGGAAT-AAAAC--TATGTAATGTAATTT-GGCGTCTATAC-ATC-TAGTATGGAACGCCGTAAT--TGTAGAAAATATGAATTTTAATT--AATGTAATAT--TTTTATAGCTTCTA-TGTAATT-----CGTATTGTC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): GAGTTAATTGCGTACCTTGTTTACTACCTAAAAACTTCTAAAAATACCAATGTCAACATCTTTTTCATCAATTTTTGAGTTGC
Unaligned ( gi|22 ): TTTTGAGTTTTCATCAGCTTCTGTGAGATGCTTAGTTCTGAATAAACACGTTGTCGTTGAACTACATGTT
Alignments
lowQualScore : 1 3333333 222222 11111111 1111111 22222222 1111111111 11111 777777777777777777777777777777777777777777777 222 11111 111 33333333333333333333333 111 11 11111 11 22 111111 111111 11 1111 111111111 111 111 111 1 1111 22 111 11111111 11 11 22 22222222 1 2222222 1111 11 1 1 555555555 1 22222 4444444444 1111 11 11 222222 1 1 111 33333333 333 33 1 111 1111 33333333333333333333333 11 3333 1 22222222222222 11 1 11 1 22
lowQualScore : 5 9999999 333333 88888888 4 8888 4 55 4 1 4444444 44 00000000 9999 4 777 9999999999 5 9 5 77777 111111111111111111111111111111111111111111111 8 66 4 4 000 4 0 4 11111 777 66 222 88888888888888888888888 7 4 0 4 4 55 4 4 777 4 4 444 33 55 4 3 6 3 777 22222 88 3 33 5 666666 111111 5 0 5 5 5 33 0000 0 222222222 77 3 0 111 111 111 0 1 99 4444 22 666 66666666 22 5 5 1 0 8 8 11 8 8 22 99999999 8 0 6 8 6666666 8 7777 8 11 8 3 0 0 222222222 0 55555 3333333333 3 2 5 8 9999 6 6 6 77 6 11 0 888888 1 0 0 0 2 0 0 777 55555555 444 88 0 5 111 6 0 0 8 4444 3 0 55555555555555555555555 44 1111 6 6 1 3 7 6 2 777 99 7 3 00000000000000 11 8 1 0 3 33 1 0 5 77
lowQualScore : . ....... ...... ........ . .... . .. . . ....... .. ........ .... . ... .......... . . . ..... ............................................. . .. . . ... . . . ..... ... .. ... ....................... . . . . . .. . . ... . . ... .. .. . . . . ... ..... .. . .. . ...... ...... . . . . . .. .... . ......... .. . . ... ... ... . . .. .... .. ... ........ .. . . . . . . .. . . .. ........ . . . . ....... . .... . .. . . . . ......... . ..... .......... . . . . .... . . . .. . .. . ...... . . . . . . . ... ........ ... .. . . ... . . . . .... . . ....................... .. .... . . . . . . . ... .. . . .............. .. . . . . .. . . . ..
lowQualScore : 5 2222222 000000 11111111 0 5555 0 55 4 9 4444444 11 11111111 4444 4 888 4444444444 0 4 0 55555 111111111111111111111111111111111111111111111 9 11 4 4 111 4 1 6 11111 888 11 222 44444444444444444444444 2 0 7 0 0 55 0 9 000 0 0 000 88 55 0 6 7 6 000 55555 88 2 33 7 444444 666666 7 7 7 7 7 66 6666 7 666666666 99 0 1 777 777 777 7 7 88 2222 88 333 00000000 77 0 0 0 8 0 0 00 0 0 00 00000000 0 8 0 0 0000000 0 0000 0 00 0 8 0 0 222222222 0 00000 8888888888 2 5 0 0 3333 7 7 7 55 7 00 8 444444 0 7 7 7 5 0 0 555 88888888 222 22 6 6 777 7 8 8 0 8888 2 8 00000000000000000000000 22 3333 7 7 0 3 8 7 2 555 22 3 7 55555555555555 00 0 0 0 2 88 0 2 5 55
consensus : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TT-CATAGC--TG-AATTT-------TAAACCTT----AA-TAAAAG----TTGA-TGA---AAT----------TTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-TGTC--TT-AT-TTTT-CAT-AAGATTT-----TG---A--A---AA----AC-----------A-----TATTTTG-CGCTTGTA-GTG-TAAAGGG--GT-CAATTA---AGT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAA--C-GTGA-TTTTGACATCTTTTAGTGGAC-ATTTT---AAAC-----ACTTGCGATTTCTTGAATCAAGATCGATATTCTTACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTG-CAT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTACGTC-A---TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTA-AA-ACTTACTA--------TAAT-TATATATTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGA-AA---T-GTG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TTTGTA-AG-TTAAA-TTTACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAA-CTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GT---ATTAGGCTATATGTNTG---------TGCAAT--AACTAT-TTGATTCGGAATAAAAC-A-TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TC--AGTGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
Reference ( family-2559 ) : NNGTATAAAAATTGCTTGTGC------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TT-CATAGC--TG-AATTT-------TAAACCTT----AANTAAAAG----TTGA-TGA---AAT----------TTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-TGTC--TT-AT-TTTTTCAT-AAGATTT-----TG---A--A---AA----A------------A-----TATTTTG-TGCTTGTA-GTG-TAAAGGG--GT-CAATNA---AGT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAA--C-GTGA-TTTTGACATCTTTTAGTGGAC-ATTTT---AAAC-----ACTTGCGATTTCTTGAATCAAGATCGATATTCTTACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTG-CAT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAANCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTACGTC-A---TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTA-AA-ACTCACTA--------TAAT-TATAT-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGA-A----T-GTG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TTTGTA-AG-TTAAA-TTTACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCNCCGAGTTTATGTAGATATTGCGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA--CTGTTGTACTCGCTAAGCTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GT---ATTAGGCTATATATNTG---------TGCAAT--AACTAT-NTGATTCGGAATAAAAC-A-TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TC--AGTGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAG--AAAATTGTAGTTTAGATTACAGGAGCATTA
gi|1 : GTGTAAAAAT-GTTTGTG-------AAAGA------ACTATATAGGGTAT--------GCTAGC-TTGTAGGCCCCC----TT-CATAGC--TG-AATTT-------TAAACCTT----AATTAAAAG----CTGA-TGA---AAT----------TTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-TGTC--TT-AT-TTTTTTATAAAAATTT-----TG---A--A---AA----A------------A-----TATTTTG-CGCTT-TA-GTG-TAAAGGG--CT-TAATAA---AGT-CACCT-TGGTTACAGAAAAGTGTCCCAACAAA--C-GTGATTTTTGACATCTTTTAGTGGAC-ATTTT---AAAC-----ACTTGCGATTTCTTGAATCAAGATCGATATTCTTACACACCTGTAAA------AATATCAA---A-TGTTA-AAATATGCCAT-GC-AAA--ATATCTATCTTGT----TCAAAAAGTCGCACA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATTGACGTCATACCTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTAGATCTATATTGATGAATGCACATGCGTGATCAATGTTGCGTTGGAAATATAATTC-AT-CGTGGAAA--TACTTTG-AACACTTACTA--------TAAT-TATATATGTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAGGAAATCCGTAGAACCCGATGTGCAATCAGA-AAT--T-GTG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGCGGCGGATAAAGACTGTTTTGTA-AGTTTAAATTTTACTTCAAACATTGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAACTGTTTGCGATCACCGAGTTTATGTAAATATTACATACAGACCGTACGTGTTTTACAACGTTGTTT-ACAAGTCTTGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA--TTGTTGTATTCGCTAA--CTCGTGGTAAAATAACCTAGCTGTTTAAAAAGTTCTCTAAAATTATATCATT-GT---ATTAGGCTATATGTTTG---------TGCAAT--AACTAT-ATGATTCGGAATAAAACTA-TATGTGACGTCAT-TT-GTCGGCTATACAATT-TAGTATGGAACACC-GTTAC-GTGTAG-AAATACGATTT----TC--AGTGTCATA--TTTC-AGTACCTGCTATTTTGATTTATTACGTATTTT--CAAAAAGCTTAGATATATTAAAT-AGTTAAAATTGTAGTTTAGATTACAGGAGTATTA
gi|10 : aaGTATAAAAATTGCTTATGCTATTTGAAAGATATTACACTATATA----------------TTGC-TTGTAGACCCCA----T--CAAAGC--TG-AATTT-------TATTCCT-----AAAGAAAAG----CTGA-TGA---AAT----------GCA-TATGAGATTGATCACATTACGTCT----------TCAACACCTTCCCAAATGAG----------TTCATGA-TCACATTT-ATATTGTTCA-----ATTTTTATGTG---ACTA---AA----ACCC---------A-----TGCTTGG-GGTTTTAA-GCG--GAGGAG--AT-CAAATA---AGT-CACCT-TGGTTACAGAAAAGTGTCTTAA
gi|11 : TTGCCTTGTAGGCCCCT----TTTCATCCT--CG-A-----------TAAAAGTTGGTGAAATAAA--------GA-TGA---AAT----------TTA-TG--AG-TT-----TATCG----T----------T----------------GCA----------TTCATAA-TGTC--TT-AT-TTT--CAT-AAGATTT-----TG---A--A---AA----ACA----------A-----TA----G-TGCTTGTA-GTG-TAACGGG--GT-CAATTA---AGT-CACCT-TGGTTACAGAGAAGTGTCTAAAT--A--C-GGAA-TTTTGACA-CCTTTAGTGGAC-ATTTC---AA
gi|12 : TGCAATCAGACA----TTGTG-TGATCATTGCATTGTTGTTTTAATGTTTATTTTTCTTCGCCGATCACGATCATTAGGC-GTGGATAAAGACTG--TTGTA-AG-TTAAA-TTTACTTCAAACATCGAT-GATT-AATAGAAAATATTCAATAACACTTTTAGATGATATTGTATTTAAATCCTATATTATATATTTCTTAAAAAGCTGTTTGCGAT
gi|13 : CT---T-TTTAAAATGTTCTCTAAAATTATGCCA---GT----TTA-ACAATAT----------------CAAT-----CAT-GCTATTCGGAATAAAAC---TATGTAATGTAAT-TT-GGCGTCTATACA-TC-TAGTATGGAACGCC-G-TAA-TTGTAGAAAATATGAATTTTAATT--AATGTAATA--TTTT-TATAGCTTCTA-TGTAATT-----CGTATTGTCGTAATCGGCGAAGAAAAATTAA
gi|14 : t-TGTC--TT-A---TTTTCAG-AAGA-AT-----TGAAAA--A---AA----A------------A-----TATTTTG-TGCTTGTA-GGG-TAAAGGG--GT-CAATTA---CGT-CACCT-TGGTTACAG--AAGTGT-CTAAAAAA--C-GCAA-TTTTGACATCTTTT-GTAGCC-ATTTTGTGAGAT-----GCTTGAG--TTC-TGAATAAA
gi|15 : CTGCAAATATGAAAGCTGTTGTACTCTCTAAG-TTCGTGGTAAGCTAACCT---T-TTT--AACGTTCTCTaccacgttgtcgttgaactgtacatgtt
gi|15 : tT-TTGATTCGGAATAAAA--A-CA----ATGTCAT-TTTGTCGTCTA-ACAGTT-TAGTATGGAACGCCAG-TACTTTGTAGAAAATA-GAATT----TC--AATGT-cgaactttttgtgattttgattcggaataaaaacaatgtcattttgtcgtctaacagtttagtatggaacgccagtactttgtagaaaatagaatttcaatgt
gi|16 : tctgcaaatatgaaagctgttgtactctctaagttcgtggtaagctaacctttttaacgttctctcgaactttttgtgatGT----TCAAAACGTCGCGCA--GAT--AACCGGTG--AAAAAATCTATCGAAAAATATG---CA---TTT---TCCTCCATAACTTTCATAGCGCCGTCATACTACCGTG--TAG----TTGTA-TGCCGTACGCTG---TACGTC-A---TGATGAATG--CATG-GTTATCAATGTAGTGTTG
gi|17 : ttgTTCTTACACATC-GTAAA------TATATCAACTAACTGTAA-AAATCTG-CAT-GC-AAA--ATTTCTATCTTCT----TTAAAACGTCGCCAA--TACTTAACCGGCGAAAAAAAACCTTTCAGATAACA
gi|18 : taaatTTTAGTGGAC-ATTTT---AAAC-----ACTTGTAATCTCTTGA-TCAATATCGATATT--TACACATC-GTAAA------TATATCAA---A-TGTTA-AAGTCTG-CAT-GC-AAA--ATATCTATCTTGT----TCAAagaa
gi|19 : tcTTGTA-AG-TTAAA-TTTACTTCAAACATCG-TTGATT-AATAGAAAATATTCAAGAACACTTTTAGATGATAATGTA--CAAATCCTATA-----TATTTCTTAAAAAGCTGTTTG
gi|2 : ATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TT-CATAGC--TG-AATTT-------TAAACCTT----AA-TAAAAG----TTGA-TGA---AAT----------TTA-TGTGAG-TT-----CATTA----T----------T----------------GCA----------TTCATAA-TGTC--TT-AT-TTT--CAT-AA----T-----TA---A--A---AA----A------------AAAAAATATTTTG-TGCTTATA-GCG-TAAAGGG--CT-TAAT-----AGT--AGAT-TGGGTTCG---AAGTGTC-TAA-AAA--C-GTGA-TTTTGACATCTTT-AGTGGGC-ATTT----AAAC-----ACTTGCGATTTCTTGA-TCA-GATCGATATT--TACACCCC-GTAAA------AATATCAA---A-TGTTA-AAATATG-CATCGCCAAA--ATATCTATCTTGTCGTATCGGAAAGTCGTA------------CGGCA--A----------CGATAAACACGGCTCAAACTCTGACTTCTCAATAATT---GCATTGACGT-ATACT--CGTGTCTAT----TTGTAT-GCCGTACACTGGACTAC----A---TGATGAATGCACATG-GTGATCAATGTTGTGTTGGAAAT-TAATTC-AT-CGTGAAAA--TACTTTT-AA-AC--ACTA--------TAAT-TAT---TTTGTGA-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAT-GA-GAAATCCGTAG-ACCCGA-GTGCAACTAGA-AAATGT-GTGGTGATCATTG-----TTGTTTT----------TT-CTTTGC-GATTACGATAATTAGGT-GCGGATAAAGACTG-TG-GTATAG-TTAAA-TT-ACTTCAAACA-CGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGAGAATGTA--TAA-TCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCTCCGAGTTTATGTAAATATTACATACAGA-CGTACGTG-TTTAAAACGTTATTTAACAAG---TGCGGTTTGTTGCATGTACTAGCC-----------ACTGCAAAAATATA---TGTTGTATTCGCTAA-CTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCT-AATTTATATCATTCGA---ATTAGGCTAT-TATTCG---------TGCA----AACTAA-TTGATT-GGAATAAAAC---TATGTG--GATATATT-GT-GGCTA-GCATTTATAGTATGGAACACC-G-TAC-GTGTAG-AAATACGAATT----TCGAGGTGT-ATA--CTTCGATT
gi|20 : ATTACGAT---TAGGA-GCGGATAAAGGATG-TT-GTA-AG-TTACA-TTTACTTCAAACATCGAT-GATTGAATAGACAAGAGTCAATAACACttaggcaatttctaataagttaacgggataatcacaaaaattaa
gi|23 : tATAGGGTAT--------ACTTGC---------CTCT----TT-AATAGC--TA-TATTT-------TAATCCTG----AA-TGAAAA----TTAA-TGA---AAT----------
gi|24 : -TTTTGACATCTTT-AGTGGAC-ATTGT---AAAC-----ACTTGCGATTTCTTG-ATCAAGATCGA
gi|25 : GA------ACTATATAGTGTAT--------GCTTGC-TTGTAGGCCCCC----TT-CATAGC--
gi|26 : TACAAACCGTACGTG-TTTACAGCGTTGTTT-ACAAG---T
gi|27 : -A---TGATGAATGCACATG-GTGATCAATG
gi|3 : ctatA--C-GTGA-TTTTGACATCTTT-AGTCAAC-ATTTT---AAAC-----ACTTGCGATTTCTTGA-TCA-GATCGATATT--TACACACC-GTAAA------AATATCAA---A--GTTAGAAATATG-CAT-GC-AAAG-ATACCTATCTATT----TCAAA--GTCGCAGAGATATCTAAACCGCG--AAAAAACCTTTCGAAAAAC------CA---TTT---TCCTCCATATCTTTCGCATTGACGTCATACT-CCGTGTCTAT----TTGTAT-GCC-TACACTGGACTAC----A---TGATGAATGCACAGT-GTGATCAATGTTGCGTTG-AAATATAATTC-ATTCGTGAAAA--TACTTTACAA-GCT-ACGA--------TAAT-TATATATTTGT-A-------TC-ACAT----TGTGTTCACG-AT--GTTTTGAAA-TGAGAAATCCGTAG-ACCCGA-GTGCAATCAG----------TG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TT-GTA-AG-TTAAA-TTTACTTCAAACATCGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAGATATTGCGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCCTTATATATACAACTGCAAAAATATA---TGTTGTATTCGCTAA-CTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GT---ATTAAGCTATATATGTG---------TGCA----AACTATATTGATTCGGAATAAAAA-C-TATGTGACATCAT-TT-GTCAGCTA-ACAATT-TTGTATGGAACACC-G-TAC-GTGTAGAAAATATGAATT----TC--AGTGTCATATTCTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAAAAGTTTAGACATA
gi|4 : -TTGTAGGCGCTCAGATTT-CATAGCGTTGTAAGTTACCACTATAAAATTT----ACATAAAAGATTCTCGAATGACAGAAC----------TTAATGTGAG-TTT----CATTA----T----------T----------------GCA----------TTCATAACTGGC--TTGAT-TTTT--AT-AAGA--T-----CA---A--AC--AA----ACATATATAGTGTA-----TATTTTGACGCTTATAGGTGTTAAATGGCAGCATAATAAGAGGGTGTACCTGTTGTTACAGAAAAGTGGTCTAATAAT--CGGTGA-TTTTGACATCTa
gi|4 : -GTGATGAAT--TGTATT----ATACAATTCAGT-GTTGAAAAATTGCTTTA-AA-ACTTACTACGTGAGAGTAATATATAT-TTTGT-AAAAATATTCAGCATTGCATATGTTCACGCATGAGTTTAAAAA-GAAaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggtgtgatgaattgtattatacaattcagtgttgaaaaattgctttaaaacttactacgtgagagtaatatatattttgtaaaaatattcagcattgcatatgttcacgcatgagtttaaaaagaa
gi|5 : ttgtaggcgctcagatttcatagcgttgtaagttaccactataaaatttacataaaagattctcgaatgacagaacttaatgtgagtttcattattgcattcataactggcttgatttttataagatcaaacaaacatatatagtgtatattttgacgcttataggtgttaaatggcagcataataagagggtgtacctgttgttacagaaaagtggtctaataatcggtgattttgacatctaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggt--------GCTTGC-TTGTAGGCCCCC----TT-CATAGC--TG-AAATT-------TA------------------------------------------------TA-TG--AA-TT-----TATTA---------------C---------------TACA----------TTAATAA-TGTC--TT-CT-TTTT--AT-AAGATTT-----TG---A--A---AA----AC-----------A-----TATTTTG-TGCTTGTT-GTG-TAAAGGG--GT-CAATTA---AGT-CACCT-TTATAACAGAAAAGTGT-CTAA-AAA--T-GTGA-TTTTGACATC-TTTAGTGGAC-ATTTT---AAACACTTTACTTGCGATTTCTTG-ATCAAGATCGATGT--TTATACACC-GTAAATATATCAATATCAA---A-TGTTA-CAATCTG-CAT-GC-AAA--ACATCTATCTTGT----TCAAAACGTTGCAAA--TATCTAACTGGTG--AAAAAAACTTTCGAAAAATGCA---CA---TTT---TCCTCCAAAACTTTCGCATTGACGTCATACCTTTGTG--TAG----TTGTA-TGGCGTACATTGG---ATGTT-A---AGATGAATG--CATG-GTGATCAATGTTACGTTGGATATATAGTTT-GT-CATGAAAA--TACCTTA-AA-AC-CACTA--------TGAT-TATAT-TTTGT-A-------TT-ACAT----TATGTCCACA-AT--GGTTTGAAATGAAGAAATCTGTAG-ACACGA-
gi|6 : GTGT------AAAGG------ACTATATAGGGTATCATATGCTGCTTGC-TTGTAGGCCC------TT-CAT------------------------CCTC----GATTAAAAG----TTGG-TGA---AATAAAGATGAAATTA-TG--AG-TT-----TATCG----T----------T----------------GCA----------TTTCTAAATGTC--TT-AT-TTTT-CAT-AAGATTT-----TG---A--A---AAAAACA------------A-----TA----G-TGCTTGTA-GTG-TAACGGG--GT-C-ATTA---AGT-CACCT-TGGTTACAGAGAAGTGTCTAAAT--A--C-G-AA-TTTTGACA-CCTTTAGTGGAC-A-TTT---AAA
gi|7 : gattatataaaaagggaattagaattaatttacatcacttatatcataaaaaaactcagtgaatacaaggtagaacttattcagatctaaaaataatggtgaaaattttgttctatgttcggtcccaaatagtcccacttaacaaagaatgaatgcgtaacattctactcctaattttaatcttacatctaactctaattttacatgttactttaaaattatacttaaaaaaaggtttaactttacacatcacgatcttaaa------------A-----TATATTG-TGCTTGTA-GTG-TGAATAG--GT-TATTTG---GTT-CACCT-TGGTTACAGAAAAATGT----GTAAAGTC-ATAC-TATTGACATCTTTAAG--AACGATTTT---ATGT-----ACTTGCGATTTCTTGA-TCAAGATCAATATTC--ACACACC-ATAAA------AAT--------------------CTG-CAT-GA-AAAGAATATTTATCTTGT----TCAAAACGTCACAGA--TA----ATCGGTG--AAAAAAGCCTTCGAAAGATATG---AA---CTT---TCTTCCATAACTTACATATCGACGTCATACTTCCGTGTACATGTAGTTGTA-TACCGTACATTG---TACGTC-A---TGATGAGTG--CATG-GTTATCAATGTTGTATTG
gi|8 : tttaaactttaatgTGT------AAAGA------ACTATATAGGGTAA--------GCTTGC-TTGTAGGCCCCC----TT-CGTAGC--TT-AATTT-------TAAACCTT----AA-TAAAAG----TTGA-TGA---GAT----------TTA-TGTGAG-TT-----CATTA----TAAAGACATTAT---------------TACATTATTAATATTTCATAA-TGTC--TT-AT-TTTT--AT-AAGATTT-----TG---A--AAATAA----A------------A-----TA-TTTG-CGCTTGTA-GTG-CAGGTGA--CT-TAATAA---ATT-CACCT-TGG-AACAGAAAAGTGT-CTAA-AAA--C-GTAA-TTTTGATATCTTTT-GTGGAC-ATTT
gi|9 : aagcttcatcctttcgtaattctatacatgatgtttaaaatatataactaaatttaccaaaatTGTATATACTAGCC-------TACAACTGCAAAAATACA---TGTTGTACTCGCTAAA-TTCGGGGTAAA-TAACCT---T-TTTAAGAAGTTCTCTAAAAGTATATCATT-GTAACAATAGGCTATATGTGTGCATAAAATTTACAATTGCACTAT--TGATTCGGAATAAAAA-ACTATGTGACGCCAT-TT-GTTGGCTA-ACAGTT-TAGTATG-------------------GAAAATGCGAATT-------------------CTTC-ATTACCTGCTA-TTTGATTTATTAATTATTTT--TAAATAGCTTAGACATATTAAATAAG--AAAATTGTAGTTTAGATTACAGGAGCATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GAGTTAATTGCGTACCTTGTTTACTACCTAAAAACTTCTAAAAATACCAATGTCAACATCTTTTTCATCAATTTTTGAGTTGC
Unaligned ( gi|22 ): TTTTGAGTTTTCATCAGCTTCTGTGAGATGCTTAGTTCTGAATAAACACGTTGTCGTTGAACTACATGTT
Alignments
lowQualScore : 1 3333333 222222 11111111 11111 1111111 11111 22222222222222222 11111 777777777777777777777777777777777777777777777 11111 33333333333333 111 11 1 11111 2 33 111111 111111 11 1111 111111111 111 111 111 1 1111 22 111 11111111 11 11 1 22222222 11 2222222 1111 11 1 1 33333333 1 22222 4444444444 1111 11 11 222222 1 1 111 33333333 222 2 111 11111 444444444444444444444444444444444 3333 1 22222222222222 11 1 11 1 11
lowQualScore : 5 5555555 333333 88888888 4 00000 0 9999999 4444444 2 11111 4 4 88888888888888888 4 777 55 5 77777 111111111111111111111111111111111111111111111 8 777 4 4 99 0 99 11111 66 66 4 66 55555555555555 8888 7 66 0 4 4 4 55 666 8888 4 4 444 33 55 4 3 1 3 777 22222 1 3 00 5 666666 111111 5 0 5 5 5 33 0000 0 222222222 77 3 0 111 111 111 0 1 99 4444 22 666 66666666 22 5 5 1 0 8 8 11 8 3 99999999 0 0 33 8 6666666 8 7777 8 11 8 3 0 0 77777777 0 55555 3333333333 3 2 5 8 9999 6 6 6 77 6 11 0 888888 0 2 0 0 777 55555555 222 0 0 111 6 3 1 6 66666 5 888888888888888888888888888888888 1111 6 6 1 3 7 6 2 777 99 7 3 00000000000000 11 8 1 0 3 33 1 0 5 88
lowQualScore : . ....... ...... ........ . ..... . ....... ....... . ..... . . ................. . ... .. . ..... ............................................. . ... . . .. . .. ..... .. .. . .. .............. .... . .. . . . . .. ... .... . . ... .. .. . . . . ... ..... . . .. . ...... ...... . . . . . .. .... . ......... .. . . ... ... ... . . .. .... .. ... ........ .. . . . . . . .. . . ........ . . .. . ....... . .... . .. . . . . ........ . ..... .......... . . . . .... . . . .. . .. . ...... . . . . ... ........ ... . . ... . . . . ..... . ................................. .... . . . . . . . ... .. . . .............. .. . . . . .. . . . ..
lowQualScore : 5 8888888 000000 11111111 0 11111 7 1111111 4444444 3 11111 4 4 22222222222222222 4 888 11 0 55555 111111111111111111111111111111111111111111111 9 888 4 8 11 1 00 11111 11 11 4 11 88888888888888 5555 2 11 7 0 0 1 55 666 5555 0 0 000 88 55 0 6 2 6 000 55555 6 2 33 7 444444 666666 7 7 7 7 7 66 6666 7 666666666 99 0 1 777 777 777 7 7 88 2222 88 333 00000000 77 0 0 0 8 0 0 00 0 6 00000000 8 8 66 0 0000000 0 0000 0 00 0 8 0 0 88888888 0 00000 8888888888 2 5 0 0 3333 7 7 7 55 7 00 8 444444 7 5 0 0 555 88888888 000 8 4 777 7 2 7 7 88888 2 000000000000000000000000000000000 3333 7 7 0 3 8 7 2 555 22 3 7 55555555555555 00 0 0 0 2 88 0 2 5 55
consensus : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--A-A--AA--N-----------A----TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAA--C-GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTC-TACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTACGTC-A---TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGAAA---T-GTG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TTTGTA-AG-TTAAA-TTTACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GT---ATTAGGCTATATGTTTG---------TGCAAT--AACTAT-TTGATTCGGAATAAAAC-A-TATGTGACGTCA-T-TTGTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TC--AGTGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
Reference ( family-2559 ) : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--A-A--AA--C-----------A----TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAA--C-GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCTTACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTACGTC-A---TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGAAA---T-GTG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TTTGTA-AG-TTAAA-TTTACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GT---ATTAGGCTATATGTNTG---------TGCAAT--AACTAT-TTGATTCGGAATAAAAC-A-TATGTGACGTCA-T-TTGTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TC--AGTGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
gi|1 : GTGTAAAAAT-GTTTGTG-------AAAGA------ACTATATAGGGTAT--------GCTAGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-ATTAAAAG----CT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTTTATAAAAATTT-----TG--A--A-A--AA--------------A----TATTTTG-CGCTT-TA-GTG-TAAAGGGCTTA--AT--AAA----GT-CACCT-TGGTTACAGAAAAGTGTCCCAACAAA--C-GTGATTTTTGACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCTTACACACCTGTAAA------AATATCAA---A-TGTTA-AAATATGCCAT-GC-AAA--ATATCTATCTTGT----TCAAAAAGTCGCACA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATTGACGTCATACCTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTAGATCTATATTGATGAATGCACATGCGTGATCAATGTTGCGTTGGAAATATAATTC-AT-CGTGGAAA--TACTTTGAACACTTACTA--------TAATTATATA-TGTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAGGAAATCCGTAGAACCCGATGTGCAATCAGAAAT--T-GTG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGCGGCGGATAAAGACTGTTTTGTA-AGTTTAAATTTTACTTCAAACATTGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAACTGTTTGCGATCACCGAGTTTATGTAAATATTACATACAGACCGTACGTGTTTTACAACGTTGTTT-ACAAGTCTTGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATAT--TGTTGTATTCGCTAAC-TCGTGGTAAAATAACCTAGCTGTTTAAAAAGTTCTCTAAAATTATATCATT-GT---ATTAGGCTATATGTTTG---------TGCAAT--AACTAT-ATGATTCGGAATAAAACTA-TATGTGACGTCA-T-TTGTCGGCTATACAATT-TAGTATGGAACACC-GTTAC-GTGTAG-AAATACGATTT----TC--AGTGTCATA--TTTC-AGTACCTGCTATTTTGATTTATTACGTATTTT--CAAAAAGCTTAGATATATTAAAT-AGTTAAAATTGTAGTTTAGATTACAGGAGTATTA
gi|10 : aaGTATAAAAATTGCTTATGCTATTTGAAAGATATTACACTATATA----------------TTGC-TTGTAGACCCCA----T-CAAAGC--TG-AATTT-------TATTCCTA-----A-AG-AAAAG----CT-----------GA-TGA---AATGCA-TATGAGATTGATCACATTACGTCT----------TCAACACCTTCCCAAATGAG----------TTCATGA-TCACATTTATATTGTTC-A----A-TTTTTATGTG--ACTA-A--AACCC-----------A----TGCTTGG-GGTTTTAA-GCG--GAGGAGATCA--AA--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCTTAA
gi|11 : TTGCCTTGTAGGCCCC--------------------TTT-------TCATCCTC-----G-AT-AAAAG----TTGGTGAAATAAAGA-TGA---AATTTA---TGAG-TT-----TATCG---------------T---------------TGCA----------TTCATAA-T---GTCT-TA-TTTTC-ATAAGA-TTT-----TG--A--A-A--AA--CA----------A----TA----G-TGCTTGTA-GTG-TAACGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAGAAGTGTCTAAAT--A--C-GGAATTTT-GACA-CCTTTAGTGGAC-ATTTC---AA
gi|12 : TGCAATCAGACA---TTGTG-TGATCATTGCATTGTTGTTTTAATGTTTATTTTTCTTCGCCGATCACGATCATTAGGC-GTGGATAAAGACTG--TTGTA-AG-TTAAA-TTTACTTCAAACATCGAT-GATT-AATAGAAAATATTCAATAACACTTTTAGATGATATTGTATTTAAATCCTATATTATATATTTCTTAAAAAGCTGTTTGCGAT
gi|13 : CT---T-TTTAAAATGTTCTCTAAAATTATGCCA---GT----TTA-ACAATAT----------------CAAT--CA-TGC-T--ATTCGGAATAAAAC---TATGTAATGTAA-T-TTGGCGTCTATACA-TC-TAGTATGGAACGCC-G-TAA-TTGTAGAAAATATGAATTTTAATT--AATGTAATA--TTTT-TATAGCTTCTA-TGTAATT-----CGTATTGTCGTAATCGGCGAAGAAAAATTAA
gi|14 : t-T---GTCT-TA-TTTTC-AGAAGA--AT-----TGAAA--A-A--AA--A-----------A----TATTTTG-TGCTTGTA-GGG-TAAAGGGGTCA--AT--TAC----GT-CACCT-TGGTTACAG--AAGTGT-CTAAAAAA--C-GCAATTTT-GACATCTTTT-GTAGCC-ATTTTGTGAGATGCTT-----GAG--TTC-TGAATAAA
gi|15 : CTGCAAATATGAAAGCTGTTGTACTCTCTAAGTTCGTGGTAAGCTAACCT---T-TTT--AACGTTCTCTCGAACTTT----TT-GT---G-------AT---TTTG---------------------AT-T-----CGGAATAAAA--A-CA----ATGTCATT-TTGTCGTCTA-ACAGTT-TAGTATGGAACGCCAG-TACTTTGTAGAAAATA-GAATT----TC--AATGT-accacgttgtcgttgaactgtacatgtt
gi|16 : tGT----TCAAAACGTCGCGCA--GAT--AACCGGTG--AAAAAATCTATCGAAAAATATG---CA---TTT---TCCTCCATAACTTTCATAGCGCCGTCATACTACCGTG--TAG----TTGTA-TGCCGTACGCTG---TACGTC-A---TGATGAATG--CATG-GTTATCAATGTAGTGTTG
gi|17 : ttgTTCTTACACATC-GTAAA------TATATCAACTAACTGTAA-AAATCTGC-AT-GC-AAA--ATTTCTATCTTCT----TTAAAACGTCGCCAA--TACTTAACCGGCGAAAAAAAACCTTTCAGATAACA
gi|18 : taaatTTTAGTGGAC-ATTTT---AAACACTT-----GTAATCTCTTGA-TCAATATCGATATT--TACACATC-GTAAA------TATATCAA---A-TGTTA-AAGTCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAagaa
gi|19 : tcTTGTA-AG-TTAAA-TTTACTTCAAACATCG-TTGATT-AATAGAAAATATTCAAGAACACTTTTAGATGATAATGTA--CAAATCCTATA-----TATTTCTTAAAAAGCTGTTTG
gi|2 : ATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T----------------GCA----------TTCATAA-T---GTCT-TATTTT-C-ATAA-----T-----TA--A--A-A--AA--A-----------AAAAATATTTTG-TGCTTATA-GCG-TAAAGGGCTTA--AT----A----GT--AGAT-TGGGTTCG---AAGTGTC-TAA-AAA--C-GTGATTTT-GACATCTTT-AGTGGGC-ATTT----AAACACTT-----GCGATTTCTTGA-TCA-GATCGATATT--TACACCCC-GTAAA------AATATCAA---A-TGTTA-AAATATGC-ATCGCCAAA--ATATCTATCTTGTCGTATCGGAAAGTCGTA------------CGGCA--A----------CGATAAACACGGCTCAAACTCTGACTTCTCAATAATT---GCATTGACGT-ATACT--CGTGTCTAT----TTGTAT-GCCGTACACTGGACTAC----A---TGATGAATGCACATG-GTGATCAATGTTGTGTTGGAAAT-TAATTC-AT-CGTGAAAA--TACTTTTAA-AC--ACTA--------TAATTAT----TTTGTGA-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAT-GA-GAAATCCGTAG-ACCCGA-GTGCAACTAGAAAATGT-GTGGTGATCATTG-----TTGTTTT----------TT-CTTTGC-GATTACGATAATTAGGT-GCGGATAAAGACTG-TG-GTATAG-TTAAA-TT-ACTTCAAACA-CGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGAGAATGTA--TAA-TCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCTCCGAGTTTATGTAAATATTACATACAGA-CGTACGTG-TTTAAAACGTTATTTAACAAG---TGCGGTTTGTTGCATGTACTAGCC-----------ACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCT-AATTTATATCATTCGA---ATTAGGCTAT-TATTCG---------TGCA----AACTAA-TTGATT-GGAATAAAAC---TATGTG--GATA-TATTGT-GGCTA-GCATTTATAGTATGGAACACC-G-TAC-GTGTAG-AAATACGAATT----TCGAGGTGT-ATA--CTTCGATT
gi|20 : ATTACGAT---TAGGA-GCGGATAAAGGATG-TT-GTA-AG-TTACA-TTTACTTCAAACATCGAT-GATTGAATAGACAAGAGTCAATAACACttaggcaatttctaataagttaacgggataatcacaaaaattaa
gi|23 : tATAGGGTAT--------ACTTGC---------CTCT----TTAATAGC--TA-TATTT-------TAATCCTG-----A-AT-GAAAA----TT-----------AA-TGA---AAT
gi|24 : TTTT-GACATCTTT-AGTGGAC-ATTGT---AAACACTT-----GCGATTTCTTG-ATCAAGATCGA
gi|25 : GA------ACTATATAGTGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--
gi|26 : TACAAACCGTACGTG-TTTACAGCGTTGTTT-ACAAG---T
gi|27 : -A---TGATGAATGCACATG-GTGATCAATG
gi|3 : ctatA--C-GTGATTTT-GACATCTTT-AGTCAAC-ATTTT---AAACACTT-----GCGATTTCTTGA-TCA-GATCGATATT--TACACACC-GTAAA------AATATCAA---A--GTTAGAAATATGC-AT-GC-AAAG-ATACCTATCTATT----TCAAA--GTCGCAGAGATATCTAAACCGCG--AAAAAACCTTTCGAAAAAC------CA---TTT---TCCTCCATATCTTTCGCATTGACGTCATACT-CCGTGTCTAT----TTGTAT-GCC-TACACTGGACTAC----A---TGATGAATGCACAGT-GTGATCAATGTTGCGTTG-AAATATAATTC-ATTCGTGAAAA--TACTTTACA-AGCTACGA--------TAATTATATA-TTTGT-A-------TC-ACAT----TGTGTTCACG-AT--GTTTTGAAA-TGAGAAATCCGTAG-ACCCGA-GTGCAATCAG---------TG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TT-GTA-AG-TTAAA-TTTACTTCAAACATCGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAGATATTGCGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCCTTATATATACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GT---ATTAAGCTATATATGTG---------TGCA----AACTATATTGATTCGGAATAAAAA-C-TATGTGACATCA-T-TTGTCAGCTA-ACAATT-TTGTATGGAACACC-G-TAC-GTGTAGAAAATATGAATT----TC--AGTGTCATATTCTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAAAAGTTTAGACATA
gi|4 : -TTGTAGGCGCTCAGATTTCATAGCGTTGTAAGTTACCACTATAAAATTT-----ACAT-AAAAGATTCTC-----------GAATGACAGAACTTAATGTGAG-TTT----CATTA----T----------T----------------GCA----------TTCATAACT---GGCT-TGATTTTT-ATAAGA---T-----CA--A--ACA--AA--CATATATAGTGTA----TATTTTGACGCTTATAGGTGTTAAATGG--CAGCATAATAAGAGGGTGTACCTGTTGTTACAGAAAAGTGGTCTAATAAT--CGGTGATTTT-GACATCTa
gi|4 : -GTGATGAAT--TGTATT----ATACAATTCAGT-GTTGAAAAATTGCTTTAAA-ACTTACTACGTGAGAGTAA-TATATATTTTGT-AAAAATATTCAGCATTGCATATGTTCACGCATGAGTTTAAAAA-GAAaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggtgtgatgaattgtattatacaattcagtgttgaaaaattgctttaaaacttactacgtgagagtaatatatattttgtaaaaatattcagcattgcatatgttcacgcatgagtttaaaaagaa
gi|5 : ttgtaggcgctcagatttcatagcgttgtaagttaccactataaaatttacataaaagattctcgaatgacagaacttaatgtgagtttcattattgcattcataactggcttgatttttataagatcaaacaaacatatatagtgtatattttgacgcttataggtgttaaatggcagcataataagagggtgtacctgttgttacagaaaagtggtctaataatcggtgattttgacatctaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggt--------GCTTGC-TTGTAGGCCCCC-----------------------------------TT-----C-AT-A---------------------GC-TGA---AATTTA-TATGAA-TT-----TATTA----C----------T----------------ACA----------TTAATAA-T---GTCT-TCTTTTT--ATAAGA-TTT-----TG--A--A-A--AA--C-----------A----TATTTTG-TGCTTGTT-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TTATAACAGAAAAGTGTC-TAA-AAA--T-GTGATTTT-GACATCTTT-AGTGGAC-ATTTT---AAACACTTTACTTGCGATTTCTTGA-TCAAGATCGATGTT--TATACACC-GTAAATATATCAATATCAA---A-TGTTA-CAATCTGC-AT-GC-AAA--ACATCTATCTTGT----TCAAAACGTTGCAAA--TATCTAACTGGTG--AAAAAAACTTTCGAAAAATGCA---CA---TTT---TCCTCCAAAACTTTCGCATTGACGTCATACCTTTGTG--TAG----TTGTA-TGGCGTACATTGG---ATGTT-A---AGATGAATG--CATG-GTGATCAATGTTACGTTGGATATATAGTTT-GT-CATGAAAA--TACCTTAAA-AC-CACTA--------TGATTATAT--TTTGT-A-------TT-ACAT----TATGTCCACA-AT--GGTTTGAAATGAAGAAATCTGTAG-ACACGA-
gi|6 : GTGT------AAAGG------ACTATATAGGGTATCATATGCTGCTTGC-TTGTAGGCCC------TTCATCCT--CG-A---T-------TAAAAGTTGGTGAA-AT-AAA-------------------GA-TGA---AATT----ATGAG-TT-----TATCG----T----------T----------------GCA----------TTTCTAAAT---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--A-A--AA--A-----------A----CA-ATAG-TGCTTGTA-GTG-TAACGGGGTC---AT--TAA----GT-CACCT-TGGTTACAGAGAAGTGTCTAAAT--A--C-G-AATTTT-GACA-CCTTTAGTGGAC-A-TTT---AAA
gi|7 : gattatataaaaagggaattagaattaatttacatcacttatatcataaaaaaactcagtgaatacaaggtagaacttattcagatctaaaaataatggtgaaaattttgttctatgttcggtcccaaatagtcccacttaacaaagaatgaatgcgtaacattctactcctaattttaatcttacatctaactctaattttacatgttactttaaaattatacttaaaaaaaggtttaactttacacatcacgatcttaaa-----------A----TATATTG-TGCTTGTA-GTG-TGAATAGGTTA--TT--TGG----TT-CACCT-TGGTTACAGAAAAATGT----GTAAAGTC-ATACTATT-GACATCTTTAAG--AACGATTTT---ATGTACTT-----GCGATTTCTTGA-TCAAGATCAATATTC--ACACACC-ATAAA------AAT--------------------CTGC-AT-GA-AAAGAATATTTATCTTGT----TCAAAACGTCACAGA--TA----ATCGGTG--AAAAAAGCCTTCGAAAGATATG---AA---CTT---TCTTCCATAACTTACATATCGACGTCATACTTCCGTGTACATGTAGTTGTA-TACCGTACATTG---TACGTC-A---TGATGAGTG--CATG-GTTATCAATGTTGTATTG
gi|8 : tttaaactttaatgTGT------AAAGA------ACTATATAGGGTAA--------GCTTGC-TTGTAGGCCCCC----TTCGTAGC--TT-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---GATTTA-TGTGAG-TT-----CATTA----TAAAGACATTAT---------------TACATTATTAATATTTCATAA-T---GTCT-TATTTTT--ATAAGA-TTT-----TG--A--A-AATAA--A-----------A----TA-TTTG-CGCTTGTA-GTG-CAGGTGACTTA--AT--AAA----TT-CACCT-TGG-AACAGAAAAGTGT-CTAA-AAA--C-GTAATTTT-GATATCTTTT-GTGGAC-ATTT
gi|9 : aagcttcatcctttcgtaattctatacatgatgtttaaaatatataactaaatttaccaaaatTGTATATACTAGCC-------TACAACTGCAAAAATACA---TGTTGTACTCGCTAAATTCGGGGT-AAATAACCT---T-TTTAAGAAGTTCTCTAAAAGTATATCATT-GTAACAATAGGCTATATGTGTGCATAAAATTTACAATTGCACTA--TTGATTCGGAATAAAAA-ACTATGTGACGCCA-T-TTGTTGGCTA-ACAGTT-TAGTATG-------------------GAAAATGCGAATT-------------------CTTC-ATTACCTGCTA-TTTGATTTATTAATTATTTT--TAAATAGCTTAGACATATTAAATAAG--AAAATTGTAGTTTAGATTACAGGAGCATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GAGTTAATTGCGTACCTTGTTTACTACCTAAAAACTTCTAAAAATACCAATGTCAACATCTTTTTCATCAATTTTTGAGTTGC
Unaligned ( gi|22 ): TTTTGAGTTTTCATCAGCTTCTGTGAGATGCTTAGTTCTGAATAAACACGTTGTCGTTGAACTACATGTT
Alignments
lowQualScore : 1 3333333 222222 11111111 11111 1111111 11111 22222222222222222 11111 777777777777777777777777777777777777777777777 11111 333333333333 111 11 1 11111 2 222 111111 111111 11 1111 111111111 111 111 111 1 1111 22 111 11111111 11 11 1 22222222 11 2222222 1111 11 1 1 33333333 1 22222 4444444444 1111 11 11 222222 1 1 111 33333333 222 1 111 1111111111 33333333333333333333333 3333 1 22222222222222 11 1 11 1 11
lowQualScore : 5 5555555 333333 88888888 4 00000 0 9999999 4444444 2 11111 4 4 88888888888888888 4 777 55 5 77777 111111111111111111111111111111111111111111111 8 777 4 4 99 0 99 11111 66 66 4 66 777777777777 8888 7 66 0 4 4 4 55 666 8888 4 4 444 33 55 4 3 1 3 777 22222 1 3 888 5 666666 111111 5 0 5 5 5 33 0000 0 222222222 77 3 0 111 111 111 0 1 99 4444 22 666 66666666 22 5 5 1 0 8 8 11 8 3 99999999 0 0 33 8 6666666 8 7777 8 11 8 3 0 0 77777777 0 55555 3333333333 3 2 5 8 9999 6 6 6 77 6 11 0 888888 0 2 0 0 777 55555555 222 0 0 5 111 6 3 6666666666 5 3 66666666666666666666666 2 999 1111 6 6 1 3 7 6 2 777 99 7 3 00000000000000 11 8 1 0 3 33 1 0 5 88
lowQualScore : . ....... ...... ........ . ..... . ....... ....... . ..... . . ................. . ... .. . ..... ............................................. . ... . . .. . .. ..... .. .. . .. ............ .... . .. . . . . .. ... .... . . ... .. .. . . . . ... ..... . . ... . ...... ...... . . . . . .. .... . ......... .. . . ... ... ... . . .. .... .. ... ........ .. . . . . . . .. . . ........ . . .. . ....... . .... . .. . . . . ........ . ..... .......... . . . . .... . . . .. . .. . ...... . . . . ... ........ ... . . . ... . . .......... . . ....................... . ... .... . . . . . . . ... .. . . .............. .. . . . . .. . . . ..
lowQualScore : 5 8888888 000000 11111111 0 11111 7 1111111 4444444 3 11111 4 4 22222222222222222 4 888 11 0 55555 111111111111111111111111111111111111111111111 9 888 4 8 11 1 00 11111 11 11 4 11 000000000000 5555 2 11 7 0 0 1 55 666 5555 0 0 000 88 55 0 6 2 6 000 55555 6 2 000 7 444444 666666 7 7 7 7 7 66 6666 7 666666666 99 0 1 777 777 777 7 7 88 2222 88 333 00000000 77 0 0 0 8 0 0 00 0 6 00000000 8 8 66 0 0000000 0 0000 0 00 0 8 0 0 88888888 0 00000 8888888888 2 5 0 0 3333 7 7 7 55 7 00 8 444444 7 5 0 0 555 88888888 000 8 6 6 777 7 2 5555555555 2 2 22222222222222222222222 5 333 3333 7 7 0 3 8 7 2 555 22 3 7 55555555555555 00 0 0 0 2 88 0 2 5 55
consensus : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--A-A--AA-----------AA----TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAA--C-GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCT-ACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTACGTC-A---TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGAAA---T-GTG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TTTGTA-AG-TTAAA-TTTACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-TTGATTCGGAATAAAAC-A-TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TC--AGTGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
Reference ( family-2559 ) : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--A-A--AA-----------NA----TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAA--C-GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCT-ACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTACGTC-A---TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGAAA---T-GTG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TTTGTA-AG-TTAAA-TTTACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-TTGATTCGGAATAAAAC-A-TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TC--AGTGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
gi|1 : GTGTAAAAAT-GTTTGTG-------AAAGA------ACTATATAGGGTAT--------GCTAGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-ATTAAAAG----CT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTTTATAAAAATTT-----TG--A--A-A--AA------------A----TATTTTG-CGCTT-TA-GTG-TAAAGGGCTTA--AT--AAA----GT-CACCT-TGGTTACAGAAAAGTGTCCCAACAAA--C-GTGATTTTTGACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCTTACACACCTGTAAA------AATATCAA---A-TGTTA-AAATATGCCAT-GC-AAA--ATATCTATCTTGT----TCAAAAAGTCGCACA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATTGACGTCATACCTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTAGATCTATATTGATGAATGCACATGCGTGATCAATGTTGCGTTGGAAATATAATTC-AT-CGTGGAAA--TACTTTGAACACTTACTA--------TAATTATATA-TGTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAGGAAATCCGTAGAACCCGATGTGCAATCAGAAAT--T-GTG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGCGGCGGATAAAGACTGTTTTGTA-AGTTTAAATTTTACTTCAAACATTGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAACTGTTTGCGATCACCGAGTTTATGTAAATATTACATACAGACCGTACGTGTTTTACAACGTTGTTT-ACAAGTCTTGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATAT--TGTTGTATTCGCTAAC-TCGTGGTAAAATAACCTAGCTGTTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-ATGATTCGGAATAAAACTA-TATGTGACGTCAT-TT-GTCGGCTATACAATT-TAGTATGGAACACC-GTTAC-GTGTAG-AAATACGATTT----TC--AGTGTCATA--TTTC-AGTACCTGCTATTTTGATTTATTACGTATTTT--CAAAAAGCTTAGATATATTAAAT-AGTTAAAATTGTAGTTTAGATTACAGGAGTATTA
gi|10 : aaGTATAAAAATTGCTTATGCTATTTGAAAGATATTACACTATATA----------------TTGC-TTGTAGACCCCA----T-CAAAGC--TG-AATTT-------TATTCCTA-----A-AG-AAAAG----CT-----------GA-TGA---AATGCA-TATGAGATTGATCACATTACGTCT----------TCAACACCTTCCCAAATGAG----------TTCATGA-TCACATTTATATTGTTC-A----A-TTTTTATGTG--ACTA-A--AACC---------CA----TGCTTGG-GGTTTTAA-GCG--GAGGAGATCA--AA--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCTTAA
gi|11 : TTGCCTTGTAGGCCCC--------------------TTT-------TCATCCTC-----G-AT-AAAAG----TTGGTGAAATAAAGA-TGA---AATTTA---TGAG-TT-----TATCG---------------T---------------TGCA----------TTCATAA-T---GTCT-TA-TTTTC-ATAAGA-TTT-----TG--A--A-A--AAC----------AA----TA----G-TGCTTGTA-GTG-TAACGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAGAAGTGTCTAAAT--A--C-GGAATTTT-GACA-CCTTTAGTGGAC-ATTTC---AA
gi|12 : TGCAATCAGACA---TTGTG-TGATCATTGCATTGTTGTTTTAATGTTTATTTTTCTTCGCCGATCACGATCATTAGGC-GTGGATAAAGACTG--TTGTA-AG-TTAAA-TTTACTTCAAACATCGAT-GATT-AATAGAAAATATTCAATAACACTTTTAGATGATATTGTATTTAAATCCTATATTATATATTTCTTAAAAAGCTGTTTGCGAT
gi|13 : CT---T-TTTAAAATGTTCTCTAAAATTATGCCA---GT-T---TA-ACAATAT----------------CAAT--CA-TGC-T--ATTCGGAATAAAAC---TATGTAATGTAAT-TT-GGCGTCTATACA-TC-TAGTATGGAACGCC-G-TAA-TTGTAGAAAATATGAATTTTAATT--AATGTAATA--TTTT-TATAGCTTCTA-TGTAATT-----CGTATTGTCGTAATCGGCGAAGAAAAATTAA
gi|14 : t-T---GTCT-TA-TTTTC-AGAAGA--AT-----TGAAA--A-A--AA-----------AA----TATTTTG-TGCTTGTA-GGG-TAAAGGGGTCA--AT--TAC----GT-CACCT-TGGTTACAG--AAGTGT-CTAAAAAA--C-GCAATTTT-GACATCTTTT-GTAGCC-ATTTTGTGAGATGCTT-----GAG--TTC-TGAATAAA
gi|15 : CTGCAAATATGAAAGCTGTTGTACTCTCTAAGTTCGTGGTAAGCTAACCT---T-TTTAAC--GTTCTCTCGAACT-------------------------T-TTTG---------TG--AT-------T-TTGATTCGGAATAAAA--A-CA----ATGTCAT-TTTGTCGTCTA-ACAGTT-TAGTATGGAACGCCAG-TACTTTGTAGAAAATA-GAATT----TC--AATGT-accacgttgtcgttgaactgtacatgtt
gi|16 : tGT----TCAAAACGTCGCGCA--GAT--AACCGGTG--AAAAAATCTATCGAAAAATATG---CA---TTT---TCCTCCATAACTTTCATAGCGCCGTCATACTACCGTG--TAG----TTGTA-TGCCGTACGCTG---TACGTC-A---TGATGAATG--CATG-GTTATCAATGTAGTGTTG
gi|17 : ttgTTCTTACACATC-GTAAA------TATATCAACTAACTGTAA-AAATCTGC-AT-GC-AAA--ATTTCTATCTTCT----TTAAAACGTCGCCAA--TACTTAACCGGCGAAAAAAAACCTTTCAGATAACA
gi|18 : taaatTTTAGTGGAC-ATTTT---AAACACTT-----GTAATCTCTTGA-TCAATATCGATATT-T-ACACATC-GTAAA------TATATCAA---A-TGTTA-AAGTCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAagaa
gi|19 : tcTTGTA-AG-TTAAA-TTTACTTCAAACATCG-TTGATT-AATAGAAAATATTCAAGAACACTTTTAGATGATAATGTA--CAAATCCTATA-----TATTTCTTAAAAAGCTGTTTG
gi|2 : ATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T----------------GCA----------TTCATAA-T---GTCT-TATTTT-C-ATAA-----T-----TA--A--A-A--AA-----------AAAAAATATTTTG-TGCTTATA-GCG-TAAAGGGCTTA--AT----A----GT--AGAT-TGGGTTCG---AAGTGTC-TAA-AAA--C-GTGATTTT-GACATCTTT-AGTGGGC-ATTT----AAACACTT-----GCGATTTCTTGA-TCA-GATCGATATT-T-ACACCCC-GTAAA------AATATCAA---A-TGTTA-AAATATGC-ATCGCCAAA--ATATCTATCTTGTCGTATCGGAAAGTCGTA------------CGGCA--A----------CGATAAACACGGCTCAAACTCTGACTTCTCAATAATT---GCATTGACGT-ATACT--CGTGTCTAT----TTGTAT-GCCGTACACTGGACTAC----A---TGATGAATGCACATG-GTGATCAATGTTGTGTTGGAAAT-TAATTC-AT-CGTGAAAA--TACTTTTAA-AC--ACTA--------TAATTAT----TTTGTGA-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAT-GA-GAAATCCGTAG-ACCCGA-GTGCAACTAGAAAATGT-GTGGTGATCATTG-----TTGTTTT----------TT-CTTTGC-GATTACGATAATTAGGT-GCGGATAAAGACTG-TG-GTATAG-TTAAA-TT-ACTTCAAACA-CGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGAGAATGTA--TAA-TCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCTCCGAGTTTATGTAAATATTACATACAGA-CGTACGTG-TTTAAAACGTTATTTAACAAG---TGCGGTTTGTTGCATGTACTAGCC-----------ACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCT-AATTTATATCATTCGAAT---TAGGCTAT-TATTCG---------TGCA----AACTAA-TTGATT-GGAATAAAAC---TATGTG--GATATATT-GT-GGCTA-GCATTTATAGTATGGAACACC-G-TAC-GTGTAG-AAATACGAATT----TCGAGGTGT-ATA--CTTCGATT
gi|20 : ATTACGAT---TAGGA-GCGGATAAAGGATG-TT-GTA-AG-TTACA-TTTACTTCAAACATCGAT-GATTGAATAGACAAGAGTCAATAACACttaggcaatttctaataagttaacgggataatcacaaaaattaa
gi|23 : tATAGGGTAT--------ACTTGC---------CTCT----TTAATAGC--TA-TATTT-------TAATCCTG-----A-AT-GAAAA----TT-----------AA-TGA---AAT
gi|24 : TTTT-GACATCTTT-AGTGGAC-ATTGT---AAACACTT-----GCGATTTCTTG-ATCAAGATCGA
gi|25 : GA------ACTATATAGTGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--
gi|26 : TACAAACCGTACGTG-TTTACAGCGTTGTTT-ACAAG---T
gi|27 : -A---TGATGAATGCACATG-GTGATCAATG
gi|3 : ctatA--C-GTGATTTT-GACATCTTT-AGTCAAC-ATTTT---AAACACTT-----GCGATTTCTTGA-TCA-GATCGATATT-T-ACACACC-GTAAA------AATATCAA---A--GTTAGAAATATGC-AT-GC-AAAG-ATACCTATCTATT----TCAAA--GTCGCAGAGATATCTAAACCGCG--AAAAAACCTTTCGAAAAAC------CA---TTT---TCCTCCATATCTTTCGCATTGACGTCATACT-CCGTGTCTAT----TTGTAT-GCC-TACACTGGACTAC----A---TGATGAATGCACAGT-GTGATCAATGTTGCGTTG-AAATATAATTC-ATTCGTGAAAA--TACTTTACA-AGCTACGA--------TAATTATATA-TTTGT-A-------TC-ACAT----TGTGTTCACG-AT--GTTTTGAAA-TGAGAAATCCGTAG-ACCCGA-GTGCAATCAG---------TG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TT-GTA-AG-TTAAA-TTTACTTCAAACATCGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAGATATTGCGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCCTTATATATACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAAGCTATATATGTG---------TGCA----AACTATATTGATTCGGAATAAAAA-C-TATGTGACATCAT-TT-GTCAGCTA-ACAATT-TTGTATGGAACACC-G-TAC-GTGTAGAAAATATGAATT----TC--AGTGTCATATTCTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAAAAGTTTAGACATA
gi|4 : -TTGTAGGCGCTCAGATTTCATAGCGTTGTAAGTTACCACTATAAAATTT-----ACAT-AAAAGATTCTC-----------GAATGACAGAACTTAATGTGAG-TTT----CATTA----T----------T----------------GCA----------TTCATAACT---GGCT-TGATTTTT-ATAAGA---T-----CA--A--ACA--AACATATATAGTGTA----TATTTTGACGCTTATAGGTGTTAAATGG--CAGCATAATAAGAGGGTGTACCTGTTGTTACAGAAAAGTGGTCTAATAAT--CGGTGATTTT-GACATCTa
gi|4 : -GTGATGAAT--TGTATT----ATACAATTCAGT-GTTGAAAAATTGCTTTAAA-ACTTACTACGTGAGAGTAA-TATATATTTTGT-AAAAATATTCAGCATTGCATATGTTCACGCATGAGTTTAAAAA-GAAaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggtgtgatgaattgtattatacaattcagtgttgaaaaattgctttaaaacttactacgtgagagtaatatatattttgtaaaaatattcagcattgcatatgttcacgcatgagtttaaaaagaa
gi|5 : ttgtaggcgctcagatttcatagcgttgtaagttaccactataaaatttacataaaagattctcgaatgacagaacttaatgtgagtttcattattgcattcataactggcttgatttttataagatcaaacaaacatatatagtgtatattttgacgcttataggtgttaaatggcagcataataagagggtgtacctgttgttacagaaaagtggtctaataatcggtgattttgacatctaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggt--------GCTTGC-TTGTAGGCCCCC-----------------------------------TT-----C-AT-A---------------------GC-TGA---AATTTA-TATGAA-TT-----TATTA----C----------T----------------ACA----------TTAATAA-T---GTCT-TCTTTTT--ATAAGA-TTT-----TG--A--A-A--AA-----------CA----TATTTTG-TGCTTGTT-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TTATAACAGAAAAGTGTC-TAA-AAA--T-GTGATTTT-GACATCTTT-AGTGGAC-ATTTT---AAACACTTTACTTGCGATTTCTTGA-TCAAGATCGATGTT-T-ATACACC-GTAAATATATCAATATCAA---A-TGTTA-CAATCTGC-AT-GC-AAA--ACATCTATCTTGT----TCAAAACGTTGCAAA--TATCTAACTGGTG--AAAAAAACTTTCGAAAAATGCA---CA---TTT---TCCTCCAAAACTTTCGCATTGACGTCATACCTTTGTG--TAG----TTGTA-TGGCGTACATTGG---ATGTT-A---AGATGAATG--CATG-GTGATCAATGTTACGTTGGATATATAGTTT-GT-CATGAAAA--TACCTTAAA-AC-CACTA--------TGATTATAT--TTTGT-A-------TT-ACAT----TATGTCCACA-AT--GGTTTGAAATGAAGAAATCTGTAG-ACACGA-
gi|6 : GTGT------AAAGG------ACTATATAGGGTATCATATGCTGCTTGC-TTGTAGGCCC------TTCATCCT--CG-A---T-------TAAAAGTTGGTGAA-AT-AAA-------------------GA-TGA---AATT----ATGAG-TT-----TATCG----T----------T----------------GCA----------TTTCTAAAT---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--A-A--AA-----------AA----CA-ATAG-TGCTTGTA-GTG-TAACGGGGTC---AT--TAA----GT-CACCT-TGGTTACAGAGAAGTGTCTAAAT--A--C-G-AATTTT-GACA-CCTTTAGTGGAC-A-TTT---AAA
gi|7 : gattatataaaaagggaattagaattaatttacatcacttatatcataaaaaaactcagtgaatacaaggtagaacttattcagatctaaaaataatggtgaaaattttgttctatgttcggtcccaaatagtcccacttaacaaagaatgaatgcgtaacattctactcctaattttaatcttacatctaactctaattttacatgttactttaaaattatacttaaaaaaaggtttaactttacacatcacgatcttaaaA----TATATTG-TGCTTGTA-GTG-TGAATAGGTTA--TT--TGG----TT-CACCT-TGGTTACAGAAAAATGT----GTAAAGTC-ATACTATT-GACATCTTTAAG--AACGATTTT---ATGTACTT-----GCGATTTCTTGA-TCAAGATCAATATTC--ACACACC-ATAAA------AAT--------------------CTGC-AT-GA-AAAGAATATTTATCTTGT----TCAAAACGTCACAGA--TA----ATCGGTG--AAAAAAGCCTTCGAAAGATATG---AA---CTT---TCTTCCATAACTTACATATCGACGTCATACTTCCGTGTACATGTAGTTGTA-TACCGTACATTG---TACGTC-A---TGATGAGTG--CATG-GTTATCAATGTTGTATTG
gi|8 : tttaaactttaatgTGT------AAAGA------ACTATATAGGGTAA--------GCTTGC-TTGTAGGCCCCC----TTCGTAGC--TT-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---GATTTA-TGTGAG-TT-----CATTA----TAAAGACATTAT---------------TACATTATTAATATTTCATAA-T---GTCT-TATTTTT--ATAAGA-TTT-----TG--A--A-AATAA-----------AA----TA-TTTG-CGCTTGTA-GTG-CAGGTGACTTA--AT--AAA----TT-CACCT-TGG-AACAGAAAAGTGT-CTAA-AAA--C-GTAATTTT-GATATCTTTT-GTGGAC-ATTT
gi|9 : aagcttcatcctttcgtaattctatacatgatgtttaaaatatataactaaatttaccaaaatTGTATATACTAGCC-------TACAACTGCAAAAATACA---TGTTGTACTCGCTAAATTCGGGGTAAA-TAACCT---T-TTTAAGAAGTTCTCTAAAAGTATATCATT-GTAACAATAGGCTATATGTGTGCATAAAATTTACAATTGCACTAT-T-GATTCGGAATAAAAA-ACTATGTGACGCCAT-TT-GTTGGCTA-ACAGTT-TAGTATG-------------------GAAAATGCGAATT-------------------CTTC-ATTACCTGCTA-TTTGATTTATTAATTATTTT--TAAATAGCTTAGACATATTAAATAAG--AAAATTGTAGTTTAGATTACAGGAGCATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GAGTTAATTGCGTACCTTGTTTACTACCTAAAAACTTCTAAAAATACCAATGTCAACATCTTTTTCATCAATTTTTGAGTTGC
Unaligned ( gi|22 ): TTTTGAGTTTTCATCAGCTTCTGTGAGATGCTTAGTTCTGAATAAACACGTTGTCGTTGAACTACATGTT
Alignments
lowQualScore : 1 3333333 222222 11111111 11111 1111111 11111 22222222222222222 11111 777777777777777777777777777777777777777777777 11111 33333333333333333333 111 11 1 11111 2 222 111111 111111 11 1111 111111111 111 111 111 1 1111 22 111 111111 11 11 1 22222222 11 2222222 1111 11 1 1 33333333 1 22222 4444444444 22 11 11 222222 1 1 111 33333333 222 1 111 1111111111 33333333333333333333333 3333 1 22222222222222 11 1 11 1 11
lowQualScore : 5 5555555 333333 88888888 4 00000 0 9999999 4444444 2 11111 4 4 88888888888888888 4 777 55 5 77777 111111111111111111111111111111111111111111111 8 777 4 4 99 0 99 11111 66 66 66 11111111111111111111 7 66 0 4 4 4 55 666 8888 4 4 444 33 55 4 3 1 3 777 22222 1 3 888 5 666666 111111 5 0 5 5 5 33 0000 0 222222222 77 3 0 111 111 111 0 1 99 4444 22 666 999999 5 22 5 5 1 0 8 8 11 8 3 99999999 0 0 33 8 6666666 8 7777 8 11 8 3 0 0 77777777 0 55555 3333333333 3 2 5 8 0 22 6 6 6 77 6 11 0 888888 0 2 0 0 777 55555555 222 0 0 5 111 6 3 6666666666 5 3 66666666666666666666666 2 999 1111 6 6 1 3 7 6 2 777 99 7 3 00000000000000 11 8 1 0 3 33 1 0 5 88
lowQualScore : . ....... ...... ........ . ..... . ....... ....... . ..... . . ................. . ... .. . ..... ............................................. . ... . . .. . .. ..... .. .. .. .................... . .. . . . . .. ... .... . . ... .. .. . . . . ... ..... . . ... . ...... ...... . . . . . .. .... . ......... .. . . ... ... ... . . .. .... .. ... ...... . .. . . . . . . .. . . ........ . . .. . ....... . .... . .. . . . . ........ . ..... .......... . . . . . .. . . . .. . .. . ...... . . . . ... ........ ... . . . ... . . .......... . . ....................... . ... .... . . . . . . . ... .. . . .............. .. . . . . .. . . . ..
lowQualScore : 5 8888888 000000 11111111 0 11111 7 1111111 4444444 3 11111 4 4 22222222222222222 4 888 11 0 55555 111111111111111111111111111111111111111111111 9 888 4 8 11 1 00 11111 11 11 11 88888888888888888888 2 11 7 0 0 1 55 666 5555 0 0 000 88 55 0 6 2 6 000 55555 6 2 000 7 444444 666666 7 7 7 7 7 66 6666 7 666666666 99 0 1 777 777 777 7 7 88 2222 88 333 333333 7 77 0 0 0 8 0 0 00 0 6 00000000 8 8 66 0 0000000 0 0000 0 00 0 8 0 0 88888888 0 00000 8888888888 2 5 0 0 8 22 7 7 7 55 7 00 8 444444 7 5 0 0 555 88888888 000 8 6 6 777 7 2 5555555555 2 2 22222222222222222222222 5 333 3333 7 7 0 3 8 7 2 555 22 3 7 55555555555555 00 0 0 0 2 88 0 2 5 55
consensus : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--AA--AA--A------------A----TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAA--C-GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCT-ACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTACGTC---AT-GATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAGA-CCCGA-GTGCAATCAGAAA---TTGTG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGCG-CGGATAAAGACTGTTT-GTA-AGTT-AAATTT-ACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-TTGATTCGGAATAAAAC-A-TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TC--AGTGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
Reference ( family-2559 ) : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--AA--AA--A------------A----TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAA--C-GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCT-ACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTACGTC---AT-GATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAGA-CCCGA-GTGCAATCAGAAA---T-GTG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGCG-CGGATAAAGACTGTTT-GTA-AGTT-AAATTT-ACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-TTGATTCGGAATAAAAC-A-TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TC--AGTGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
gi|1 : GTGTAAAAAT-GTTTGTG-------AAAGA------ACTATATAGGGTAT--------GCTAGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-ATTAAAAG----CT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTTTATAAAAATTT-----TG--A--AA--AA--A-----------------TATTTTG-CGCTT-TA-GTG-TAAAGGGCTTA--AT--AAA----GT-CACCT-TGGTTACAGAAAAGTGTCCCAACAAA--C-GTGATTTTTGACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCTTACACACCTGTAAA------AATATCAA---A-TGTTA-AAATATGCCAT-GC-AAA--ATATCTATCTTGT----TCAAAAAGTCGCACA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATTGACGTCATACCTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTAGATCTATATTGATGAATGCACATGCGTGATCAATGTTGCGTTGGAAATATAATTC-AT-CGTGGAAA--TACTTTGAACACTTACTA--------TAATTATATA-TGTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAGGAAATCCGTAGAACCCGATGTGCAATCAGAAA---TTGTG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGCGGCGGATAAAGACTGTTTTGTA-AGTTTAAATTTTACTTCAAACATTGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAACTGTTTGCGATCACCGAGTTTATGTAAATATTACATACAGACCGTACGTGTTTTACAACGTTGTTT-ACAAGTCTTGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATAT--TGTTGTATTCGCTAAC-TCGTGGTAAAATAACCTAGCTGTTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-ATGATTCGGAATAAAACTA-TATGTGACGTCAT-TT-GTCGGCTATACAATT-TAGTATGGAACACC-GTTAC-GTGTAG-AAATACGATTT----TC--AGTGTCATA--TTTC-AGTACCTGCTATTTTGATTTATTACGTATTTT--CAAAAAGCTTAGATATATTAAAT-AGTTAAAATTGTAGTTTAGATTACAGGAGTATTA
gi|10 : aaGTATAAAAATTGCTTATGCTATTTGAAAGATATTACACTATATA----------------TTGC-TTGTAGACCCCA----T-CAAAGC--TG-AATTT-------TATTCCTA-----A-AG-AAAAG----CT-----------GA-TGA---AATGCA-TATGAGATTGATCACATTACGTCT----------TCAACACCTTCCCAAATGAG----------TTCATGA-TCACATTTATATTGTTC-A----A-TTTTTATGTG--ACTAA--AACCC------------A----TGCTTGG-GGTTTTAA-GCG--GAGGAGATCA--AA--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCTTAA
gi|11 : TTGCCTTGTAGGCCCC--------------------TTT-------TCATCCTC-----G-AT-AAAAG----TTGGTGAAATAAAGA-TGA---AATTTA---TGAG-TT-----TATCG---------------T---------------TGCA----------TTCATAA-T---GTCT-TA-TTTTC-ATAAGA-TTT-----TG--A--AA--AAC-A------------A----TA----G-TGCTTGTA-GTG-TAACGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAGAAGTGTCTAAAT--A--C-GGAATTTT-GACA-CCTTTAGTGGAC-ATTTC---AA
gi|12 : TGCAATCAGACA---TTGTG-TGATCATTGCATTGTTGTTTTAATGTTTATTTTTCTTCGCCGATCACGATCATTAGGCG-TGGATAAAGACTG-TT-GTA-AGTT-AAATTT-ACTTCAAACATCGAT-GATT-AATAGAAAATATTCAATAACACTTTTAGATGATATTGTATTTAAATCCTATATTATATATTTCTTAAAAAGCTGTTTGCGAT
gi|13 : CT---T-TTTAAAATGTTCTCTAAAATTATGCCA---GT-T---TA-ACAATAT----------------CAAT--CA-TGC-T--ATTCGGAATAAAAC---TATGTAATGTAAT-TT-GGCGTCTATACA-TC-TAGTATGGAACGCC-G-TAA-TTGTAGAAAATATGAATTTTAATT--AATGTAATA--TTTT-TATAGCTTCTA-TGTAATT-----CGTATTGTCGTAATCGGCGAAGAAAAATTAA
gi|14 : t-T---GTCT-TA-TTTTC-AGAAGA--AT-----TGAAA--AA--AA--A------------A----TATTTTG-TGCTTGTA-GGG-TAAAGGGGTCA--AT--TAC----GT-CACCT-TGGTTACAG--AAGTGT-CTAAAAAA--C-GCAATTTT-GACATCTTTT-GTAGCC-ATTTTGTGAGATGCTT-----GAG--TTC-TGAATAAA
gi|15 : CTGCAAATATGAAAGCTGTTGTACTCTCTAAGTTCGTGGTAAGCTAACCT---T-TTTAAC--GTTCTCTCGAACT-------------------------T-TTTG---------TG--AT-------T-TTGATTCGGAATAAAA--A-CA----ATGTCAT-TTTGTCGTCTA-ACAGTT-TAGTATGGAACGCCAG-TACTTTGTAGAAAATA-GAATT----TC--AATGT-accacgttgtcgttgaactgtacatgtt
gi|16 : tGT----TCAAAACGTCGCGCA--GAT--AACCGGTG--AAAAAATCTATCGAAAAATATG---CA---TTT---TCCTCCATAACTTTCATAGCGCCGTCATACTACCGTG--TAG----TTGTA-TGCCGTACGCTG---TACGTC---AT-GATGAATG--CATG-GTTATCAATGTAGTGTTG
gi|17 : ttgTTCTTACACATC-GTAAA------TATATCAACTAACTGTAA-AAATCTGC-AT-GC-AAA--ATTTCTATCTTCT----TTAAAACGTCGCCAA--TACTTAACCGGCGAAAAAAAACCTTTCAGATAACA
gi|18 : taaatTTTAGTGGAC-ATTTT---AAACACTT-----GTAATCTCTTGA-TCAATATCGATATT-T-ACACATC-GTAAA------TATATCAA---A-TGTTA-AAGTCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAagaa
gi|19 : tcTT-GTA-AGTT-AAATTT-ACTTCAAACATCG-TTGATT-AATAGAAAATATTCAAGAACACTTTTAGATGATAATGTA--CAAATCCTATA-----TATTTCTTAAAAAGCTGTTTG
gi|2 : ATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T----------------GCA----------TTCATAA-T---GTCT-TATTTT-C-ATAA-----T-----TA--A--AA--AA--A------------AAAAATATTTTG-TGCTTATA-GCG-TAAAGGGCTTA--AT----A----GT--AGAT-TGGGTTCG---AAGTGTC-TAA-AAA--C-GTGATTTT-GACATCTTT-AGTGGGC-ATTT----AAACACTT-----GCGATTTCTTGA-TCA-GATCGATATT-T-ACACCCC-GTAAA------AATATCAA---A-TGTTA-AAATATGC-ATCGCCAAA--ATATCTATCTTGTCGTATCGGAAAGTCGTA------------CGGCA--A----------CGATAAACACGGCTCAAACTCTGACTTCTCAATAATT---GCATTGACGT-ATACT--CGTGTCTAT----TTGTAT-GCCGTACACTGGACTAC------AT-GATGAATGCACATG-GTGATCAATGTTGTGTTGGAAAT-TAATTC-AT-CGTGAAAA--TACTTTTAA-AC--ACTA--------TAATTAT----TTTGTGA-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAT-GA-GAAATCCGTAGA-CCCGA-GTGCAACTAGAAAATGT-GTGGTGATCATTG-----TTGTTTT----------TT-CTTTGC-GATTACGATAATTAGGTG-CGGATAAAGACTGTG--GTATAGTT-AAATT--ACTTCAAACA-CGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGAGAATGTA--TAA-TCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCTCCGAGTTTATGTAAATATTACATACAGA-CGTACGTG-TTTAAAACGTTATTTAACAAG---TGCGGTTTGTTGCATGTACTAGCC-----------ACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCT-AATTTATATCATTCGAAT---TAGGCTAT-TATTCG---------TGCA----AACTAA-TTGATT-GGAATAAAAC---TATGTG--GATATATT-GT-GGCTA-GCATTTATAGTATGGAACACC-G-TAC-GTGTAG-AAATACGAATT----TCGAGGTGT-ATA--CTTCGATT
gi|20 : ATTACGAT---TAGGAG-CGGATAAAGGATGTT--GTA-AGTT-ACATTT-ACTTCAAACATCGAT-GATTGAATAGACAAGAGTCAATAACACttaggcaatttctaataagttaacgggataatcacaaaaattaa
gi|23 : tATAGGGTAT--------ACTTGC---------CTCT----TTAATAGC--TA-TATTT-------TAATCCTG-----A-AT-GAAAA----TT-----------AA-TGA---AAT
gi|24 : TTTT-GACATCTTT-AGTGGAC-ATTGT---AAACACTT-----GCGATTTCTTG-ATCAAGATCGA
gi|25 : GA------ACTATATAGTGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--
gi|26 : TACAAACCGTACGTG-TTTACAGCGTTGTTT-ACAAG---T
gi|27 : ---AT-GATGAATGCACATG-GTGATCAATG
gi|3 : ctatA--C-GTGATTTT-GACATCTTT-AGTCAAC-ATTTT---AAACACTT-----GCGATTTCTTGA-TCA-GATCGATATT-T-ACACACC-GTAAA------AATATCAA---A--GTTAGAAATATGC-AT-GC-AAAG-ATACCTATCTATT----TCAAA--GTCGCAGAGATATCTAAACCGCG--AAAAAACCTTTCGAAAAAC------CA---TTT---TCCTCCATATCTTTCGCATTGACGTCATACT-CCGTGTCTAT----TTGTAT-GCC-TACACTGGACTAC------AT-GATGAATGCACAGT-GTGATCAATGTTGCGTTG-AAATATAATTC-ATTCGTGAAAA--TACTTTACA-AGCTACGA--------TAATTATATA-TTTGT-A-------TC-ACAT----TGTGTTCACG-AT--GTTTTGAAA-TGAGAAATCCGTAGA-CCCGA-GTGCAATCAG---------TG-TGATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGCG-CGGATAAAGACTGTT--GTA-AGTT-AAATTT-ACTTCAAACATCGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAGATATTGCGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCCTTATATATACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAAGCTATATATGTG---------TGCA----AACTATATTGATTCGGAATAAAAA-C-TATGTGACATCAT-TT-GTCAGCTA-ACAATT-TTGTATGGAACACC-G-TAC-GTGTAGAAAATATGAATT----TC--AGTGTCATATTCTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAAAAGTTTAGACATA
gi|4 : -TTGTAGGCGCTCAGATTTCATAGCGTTGTAAGTTACCACTATAAAATTT-----ACAT-AAAAGATTCTC-----------GAATGACAGAACTTAATGTGAG-TTT----CATTA----T----------T----------------GCA----------TTCATAACT---GGCT-TGATTTTT-ATAAGA---T-----CA--A--AC--AA--ACATATATAGTGTA----TATTTTGACGCTTATAGGTGTTAAATGG--CAGCATAATAAGAGGGTGTACCTGTTGTTACAGAAAAGTGGTCTAATAAT--CGGTGATTTT-GACATCTa
gi|4 : -GTGATGAAT--TGTATT----ATACAATTCAGT-GTTGAAAAATTGCTTTAAA-ACTTACTACGTGAGAGTAA-TATATATTTTGT-AAAAATATTCAGCATTGCATATGTTCACGCATGAGTTTAAAAA-GAAaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggtgtgatgaattgtattatacaattcagtgttgaaaaattgctttaaaacttactacgtgagagtaatatatattttgtaaaaatattcagcattgcatatgttcacgcatgagtttaaaaagaa
gi|5 : ttgtaggcgctcagatttcatagcgttgtaagttaccactataaaatttacataaaagattctcgaatgacagaacttaatgtgagtttcattattgcattcataactggcttgatttttataagatcaaacaaacatatatagtgtatattttgacgcttataggtgttaaatggcagcataataagagggtgtacctgttgttacagaaaagtggtctaataatcggtgattttgacatctaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggt--------GCTTGC-TTGTAGGCCCCC-----------------------------------TT-----C-AT-A---------------------GC-TGA---AATTTA-TATGAA-TT-----TATTA----C----------T----------------ACA----------TTAATAA-T---GTCT-TCTTTTT--ATAAGA-TTT-----TG--A--AA--AA--C------------A----TATTTTG-TGCTTGTT-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TTATAACAGAAAAGTGTC-TAA-AAA--T-GTGATTTT-GACATCTTT-AGTGGAC-ATTTT---AAACACTTTACTTGCGATTTCTTGA-TCAAGATCGATGTT-T-ATACACC-GTAAATATATCAATATCAA---A-TGTTA-CAATCTGC-AT-GC-AAA--ACATCTATCTTGT----TCAAAACGTTGCAAA--TATCTAACTGGTG--AAAAAAACTTTCGAAAAATGCA---CA---TTT---TCCTCCAAAACTTTCGCATTGACGTCATACCTTTGTG--TAG----TTGTA-TGGCGTACATTGG---ATGTT---AA-GATGAATG--CATG-GTGATCAATGTTACGTTGGATATATAGTTT-GT-CATGAAAA--TACCTTAAA-AC-CACTA--------TGATTATAT--TTTGT-A-------TT-ACAT----TATGTCCACA-AT--GGTTTGAAATGAAGAAATCTGTAGA-CACGA-
gi|6 : GTGT------AAAGG------ACTATATAGGGTATCATATGCTGCTTGC-TTGTAGGCCC------TTCATCCT--CG-A---T-------TAAAAGTTGGTGAA-AT-AAA-------------------GA-TGA---AATT----ATGAG-TT-----TATCG----T----------T----------------GCA----------TTTCTAAAT---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--AA--AA--A------------A----CA-ATAG-TGCTTGTA-GTG-TAACGGGGTC---AT--TAA----GT-CACCT-TGGTTACAGAGAAGTGTCTAAAT--A--C-G-AATTTT-GACA-CCTTTAGTGGAC-A-TTT---AAA
gi|7 : gattatataaaaagggaattagaattaatttacatcacttatatcataaaaaaactcagtgaatacaaggtagaacttattcagatctaaaaataatggtgaaaattttgttctatgttcggtcccaaatagtcccacttaacaaagaatgaatgcgtaacattctactcctaattttaatcttacatctaactctaattttacatgttactttaaaattatacttaaaaaaaggtttaactttacacatcacgatcttaaa------------A----TATATTG-TGCTTGTA-GTG-TGAATAGGTTA--TT--TGG----TT-CACCT-TGGTTACAGAAAAATGT----GTAAAGTC-ATACTATT-GACATCTTTAAG--AACGATTTT---ATGTACTT-----GCGATTTCTTGA-TCAAGATCAATATTC--ACACACC-ATAAA------AAT--------------------CTGC-AT-GA-AAAGAATATTTATCTTGT----TCAAAACGTCACAGA--TA----ATCGGTG--AAAAAAGCCTTCGAAAGATATG---AA---CTT---TCTTCCATAACTTACATATCGACGTCATACTTCCGTGTACATGTAGTTGTA-TACCGTACATTG---TACGTC---AT-GATGAGTG--CATG-GTTATCAATGTTGTATTG
gi|8 : tttaaactttaatgTGT------AAAGA------ACTATATAGGGTAA--------GCTTGC-TTGTAGGCCCCC----TTCGTAGC--TT-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---GATTTA-TGTGAG-TT-----CATTA----TAAAGACATTAT---------------TACATTATTAATATTTCATAA-T---GTCT-TATTTTT--ATAAGA-TTT-----TG--A--AAATAA--A------------A----TA-TTTG-CGCTTGTA-GTG-CAGGTGACTTA--AT--AAA----TT-CACCT-TGG-AACAGAAAAGTGT-CTAA-AAA--C-GTAATTTT-GATATCTTTT-GTGGAC-ATTT
gi|9 : aagcttcatcctttcgtaattctatacatgatgtttaaaatatataactaaatttaccaaaatTGTATATACTAGCC-------TACAACTGCAAAAATACA---TGTTGTACTCGCTAAATTCGGGGTAAA-TAACCT---T-TTTAAGAAGTTCTCTAAAAGTATATCATT-GTAACAATAGGCTATATGTGTGCATAAAATTTACAATTGCACTAT-T-GATTCGGAATAAAAA-ACTATGTGACGCCAT-TT-GTTGGCTA-ACAGTT-TAGTATG-------------------GAAAATGCGAATT-------------------CTTC-ATTACCTGCTA-TTTGATTTATTAATTATTTT--TAAATAGCTTAGACATATTAAATAAG--AAAATTGTAGTTTAGATTACAGGAGCATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GAGTTAATTGCGTACCTTGTTTACTACCTAAAAACTTCTAAAAATACCAATGTCAACATCTTTTTCATCAATTTTTGAGTTGC
Unaligned ( gi|22 ): TTTTGAGTTTTCATCAGCTTCTGTGAGATGCTTAGTTCTGAATAAACACGTTGTCGTTGAACTACATGTT
Alignments
lowQualScore : 1 3333333 222222 11111111 11111 1111111 11111 22222222222222222 11111 777777777777777777777777777777777777777777777 11111 33333333333333333333 111 11 1 11111 2 222 111111 111111 11 1111 111111111 111 111 111 1 1111 22 111 11111111 11 11 1 22222222 11 2222222 1111 11 1 1 111 22222 4444444444 1111 11 11 222222 1 1 111 33333333 222 1 111 1111111111 33333333333333333333333 3333 1 22222222222222 11 1 11 1 11
lowQualScore : 5 5555555 333333 88888888 4 00000 0 9999999 4444444 2 11111 4 4 88888888888888888 4 777 55 5 77777 111111111111111111111111111111111111111111111 8 777 4 4 99 0 99 11111 66 66 66 11111111111111111111 7 66 0 4 4 4 55 666 8888 4 4 444 33 55 4 3 1 3 777 22222 1 3 888 5 666666 111111 5 0 5 5 5 33 0000 0 222222222 77 3 0 111 111 111 0 1 99 4444 22 666 66666666 22 5 5 1 0 8 8 11 8 3 99999999 0 0 33 8 6666666 8 7777 8 11 8 3 0 0 6666 777 55555 3333333333 3 2 5 8 9999 6 6 6 77 6 11 0 888888 0 2 0 0 777 55555555 222 0 0 5 111 6 3 6666666666 5 3 66666666666666666666666 2 999 1111 6 6 1 3 7 6 2 777 99 7 3 00000000000000 11 8 1 0 3 33 1 0 5 88
lowQualScore : . ....... ...... ........ . ..... . ....... ....... . ..... . . ................. . ... .. . ..... ............................................. . ... . . .. . .. ..... .. .. .. .................... . .. . . . . .. ... .... . . ... .. .. . . . . ... ..... . . ... . ...... ...... . . . . . .. .... . ......... .. . . ... ... ... . . .. .... .. ... ........ .. . . . . . . .. . . ........ . . .. . ....... . .... . .. . . . . .... ... ..... .......... . . . . .... . . . .. . .. . ...... . . . . ... ........ ... . . . ... . . .......... . . ....................... . ... .... . . . . . . . ... .. . . .............. .. . . . . .. . . . ..
lowQualScore : 5 8888888 000000 11111111 0 11111 7 1111111 4444444 3 11111 4 4 22222222222222222 4 888 11 0 55555 111111111111111111111111111111111111111111111 9 888 4 8 11 1 00 11111 11 11 11 88888888888888888888 2 11 7 0 0 1 55 666 5555 0 0 000 88 55 0 6 2 6 000 55555 6 2 000 7 444444 666666 7 7 7 7 7 66 6666 7 666666666 99 0 1 777 777 777 7 7 88 2222 88 333 00000000 77 0 0 0 8 0 0 00 0 6 00000000 8 8 66 0 0000000 0 0000 0 00 0 8 0 0 8888 555 00000 8888888888 2 5 0 0 3333 7 7 7 55 7 00 8 444444 7 5 0 0 555 88888888 000 8 6 6 777 7 2 5555555555 2 2 22222222222222222222222 5 333 3333 7 7 0 3 8 7 2 555 22 3 7 55555555555555 00 0 0 0 2 88 0 2 5 55
consensus : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--AA--AA--A------------A----TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAA--C-GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCT-ACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTACGTC-A---TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGAAATTGTGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TTTGTA-AG-TTAAA-TTTACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-TTGATTCGGAATAAAAC-A-TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TC--AGTGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
Reference ( family-2559 ) : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--AA--AA--A------------A----TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAA--C-GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCT-ACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTACGTC-A---TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGAAATTGTGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TTTGTA-AG-TTAAA-TTTACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-TTGATTCGGAATAAAAC-A-TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TC--AGTGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
gi|1 : GTGTAAAAAT-GTTTGTG-------AAAGA------ACTATATAGGGTAT--------GCTAGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-ATTAAAAG----CT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTTTATAAAAATTT-----TG--A--AA--AA--A-----------------TATTTTG-CGCTT-TA-GTG-TAAAGGGCTTA--AT--AAA----GT-CACCT-TGGTTACAGAAAAGTGTCCCAACAAA--C-GTGATTTTTGACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCTTACACACCTGTAAA------AATATCAA---A-TGTTA-AAATATGCCAT-GC-AAA--ATATCTATCTTGT----TCAAAAAGTCGCACA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATTGACGTCATACCTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTAGATCTATATTGATGAATGCACATGCGTGATCAATGTTGCGTTGGAAATATAATTC-AT-CGTGGAAA--TACTTTGAACACTTACTA--------TAATTATATA-TGTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAGGAAATCCGTAGAACCCGATGTGCAATCAGAAATTGTGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGCGGCGGATAAAGACTGTTTTGTA-AGTTTAAATTTTACTTCAAACATTGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAACTGTTTGCGATCACCGAGTTTATGTAAATATTACATACAGACCGTACGTGTTTTACAACGTTGTTT-ACAAGTCTTGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATAT--TGTTGTATTCGCTAAC-TCGTGGTAAAATAACCTAGCTGTTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-ATGATTCGGAATAAAACTA-TATGTGACGTCAT-TT-GTCGGCTATACAATT-TAGTATGGAACACC-GTTAC-GTGTAG-AAATACGATTT----TC--AGTGTCATA--TTTC-AGTACCTGCTATTTTGATTTATTACGTATTTT--CAAAAAGCTTAGATATATTAAAT-AGTTAAAATTGTAGTTTAGATTACAGGAGTATTA
gi|10 : aaGTATAAAAATTGCTTATGCTATTTGAAAGATATTACACTATATA----------------TTGC-TTGTAGACCCCA----T-CAAAGC--TG-AATTT-------TATTCCTA-----A-AG-AAAAG----CT-----------GA-TGA---AATGCA-TATGAGATTGATCACATTACGTCT----------TCAACACCTTCCCAAATGAG----------TTCATGA-TCACATTTATATTGTTC-A----A-TTTTTATGTG--ACTAA--AACCC------------A----TGCTTGG-GGTTTTAA-GCG--GAGGAGATCA--AA--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCTTAA
gi|11 : TTGCCTTGTAGGCCCC--------------------TTT-------TCATCCTC-----G-AT-AAAAG----TTGGTGAAATAAAGA-TGA---AATTTA---TGAG-TT-----TATCG---------------T---------------TGCA----------TTCATAA-T---GTCT-TA-TTTTC-ATAAGA-TTT-----TG--A--AA--AAC-A------------A----TA----G-TGCTTGTA-GTG-TAACGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAGAAGTGTCTAAAT--A--C-GGAATTTT-GACA-CCTTTAGTGGAC-ATTTC---AA
gi|12 : TGCAATCAGACATTGTGTG---ATCATTGCATTGTTGTTTTAATGTTTATTTTTCTTCGCCGATCACGATCATTAGGC-GTGGATAAAGACTG--TTGTA-AG-TTAAA-TTTACTTCAAACATCGAT-GATT-AATAGAAAATATTCAATAACACTTTTAGATGATATTGTATTTAAATCCTATATTATATATTTCTTAAAAAGCTGTTTGCGAT
gi|13 : CT---T-TTTAAAATGTTCTCTAAAATTATGCCA---GT-T---TA-ACAATAT----------------CAAT--CA-TGC-T--ATTCGGAATAAAAC---TATGTAATGTAAT-TT-GGCGTCTATACA-TC-TAGTATGGAACGCC-G-TAA-TTGTAGAAAATATGAATTTTAATT--AATGTAATA--TTTT-TATAGCTTCTA-TGTAATT-----CGTATTGTCGTAATCGGCGAAGAAAAATTAA
gi|14 : t-T---GTCT-TA-TTTTC-AGAAGA--AT-----TGAAA--AA--AA--A------------A----TATTTTG-TGCTTGTA-GGG-TAAAGGGGTCA--AT--TAC----GT-CACCT-TGGTTACAG--AAGTGT-CTAAAAAA--C-GCAATTTT-GACATCTTTT-GTAGCC-ATTTTGTGAGATGCTT-----GAG--TTC-TGAATAAA
gi|15 : CTGCAAATATGAAAGCTGTTGTACTCTCTAAGTTCGTGGTAAGCTAACCT---T-TTTAAC--GTTCTCTCGAACT-------------------------T-TTTG---------TG--AT-------T-TTGATTCGGAATAAAA--A-CA----ATGTCAT-TTTGTCGTCTA-ACAGTT-TAGTATGGAACGCCAG-TACTTTGTAGAAAATA-GAATT----TC--AATGT-accacgttgtcgttgaactgtacatgtt
gi|16 : tGT----TCAAAACGTCGCGCA--GAT--AACCGGTG--AAAAAATCTATCGAAAAATATG---CA---TTT---TCCTCCATAACTTTCATAGCGCCGTCATACTACCGTG--TAG----TTGTA-TGCCGTACGCTG---TACGTC-A---TGATGAATG--CATG-GTTATCAATGTAGTGTTG
gi|17 : ttgTTCTTACACATC-GTAAA------TATATCAACTAACTGTAA-AAATCTGC-AT-GC-AAA--ATTTCTATCTTCT----TTAAAACGTCGCCAA--TACTTAACCGGCGAAAAAAAACCTTTCAGATAACA
gi|18 : taaatTTTAGTGGAC-ATTTT---AAACACTT-----GTAATCTCTTGA-TCAATATCGATATT-T-ACACATC-GTAAA------TATATCAA---A-TGTTA-AAGTCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAagaa
gi|19 : tcTTGTA-AG-TTAAA-TTTACTTCAAACATCG-TTGATT-AATAGAAAATATTCAAGAACACTTTTAGATGATAATGTA--CAAATCCTATA-----TATTTCTTAAAAAGCTGTTTG
gi|2 : ATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T----------------GCA----------TTCATAA-T---GTCT-TATTTT-C-ATAA-----T-----TA--A--AA--AA--A------------AAAAATATTTTG-TGCTTATA-GCG-TAAAGGGCTTA--AT----A----GT--AGAT-TGGGTTCG---AAGTGTC-TAA-AAA--C-GTGATTTT-GACATCTTT-AGTGGGC-ATTT----AAACACTT-----GCGATTTCTTGA-TCA-GATCGATATT-T-ACACCCC-GTAAA------AATATCAA---A-TGTTA-AAATATGC-ATCGCCAAA--ATATCTATCTTGTCGTATCGGAAAGTCGTA------------CGGCA--A----------CGATAAACACGGCTCAAACTCTGACTTCTCAATAATT---GCATTGACGT-ATACT--CGTGTCTAT----TTGTAT-GCCGTACACTGGACTAC----A---TGATGAATGCACATG-GTGATCAATGTTGTGTTGGAAAT-TAATTC-AT-CGTGAAAA--TACTTTTAA-AC--ACTA--------TAATTAT----TTTGTGA-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAT-GA-GAAATCCGTAG-ACCCGA-GTGCAACTAGAAAATGTGTGGTGATCATTG-----TTGTTTT----------TT-CTTTGC-GATTACGATAATTAGGT-GCGGATAAAGACTG-TG-GTATAG-TTAAA-TT-ACTTCAAACA-CGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGAGAATGTA--TAA-TCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCTCCGAGTTTATGTAAATATTACATACAGA-CGTACGTG-TTTAAAACGTTATTTAACAAG---TGCGGTTTGTTGCATGTACTAGCC-----------ACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCT-AATTTATATCATTCGAAT---TAGGCTAT-TATTCG---------TGCA----AACTAA-TTGATT-GGAATAAAAC---TATGTG--GATATATT-GT-GGCTA-GCATTTATAGTATGGAACACC-G-TAC-GTGTAG-AAATACGAATT----TCGAGGTGT-ATA--CTTCGATT
gi|20 : ATTACGAT---TAGGA-GCGGATAAAGGATG-TT-GTA-AG-TTACA-TTTACTTCAAACATCGAT-GATTGAATAGACAAGAGTCAATAACACttaggcaatttctaataagttaacgggataatcacaaaaattaa
gi|23 : tATAGGGTAT--------ACTTGC---------CTCT----TTAATAGC--TA-TATTT-------TAATCCTG-----A-AT-GAAAA----TT-----------AA-TGA---AAT
gi|24 : TTTT-GACATCTTT-AGTGGAC-ATTGT---AAACACTT-----GCGATTTCTTG-ATCAAGATCGA
gi|25 : GA------ACTATATAGTGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--
gi|26 : TACAAACCGTACGTG-TTTACAGCGTTGTTT-ACAAG---T
gi|27 : -A---TGATGAATGCACATG-GTGATCAATG
gi|3 : ctatA--C-GTGATTTT-GACATCTTT-AGTCAAC-ATTTT---AAACACTT-----GCGATTTCTTGA-TCA-GATCGATATT-T-ACACACC-GTAAA------AATATCAA---A--GTTAGAAATATGC-AT-GC-AAAG-ATACCTATCTATT----TCAAA--GTCGCAGAGATATCTAAACCGCG--AAAAAACCTTTCGAAAAAC------CA---TTT---TCCTCCATATCTTTCGCATTGACGTCATACT-CCGTGTCTAT----TTGTAT-GCC-TACACTGGACTAC----A---TGATGAATGCACAGT-GTGATCAATGTTGCGTTG-AAATATAATTC-ATTCGTGAAAA--TACTTTACA-AGCTACGA--------TAATTATATA-TTTGT-A-------TC-ACAT----TGTGTTCACG-AT--GTTTTGAAA-TGAGAAATCCGTAG-ACCCGA-GTGCAATCAG------TGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TT-GTA-AG-TTAAA-TTTACTTCAAACATCGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAGATATTGCGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCCTTATATATACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAAGCTATATATGTG---------TGCA----AACTATATTGATTCGGAATAAAAA-C-TATGTGACATCAT-TT-GTCAGCTA-ACAATT-TTGTATGGAACACC-G-TAC-GTGTAGAAAATATGAATT----TC--AGTGTCATATTCTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAAAAGTTTAGACATA
gi|4 : -TTGTAGGCGCTCAGATTTCATAGCGTTGTAAGTTACCACTATAAAATTT-----ACAT-AAAAGATTCTC-----------GAATGACAGAACTTAATGTGAG-TTT----CATTA----T----------T----------------GCA----------TTCATAACT---GGCT-TGATTTTT-ATAAGA---T-----CA--A--AC--AA--ACATATATAGTGTA----TATTTTGACGCTTATAGGTGTTAAATGG--CAGCATAATAAGAGGGTGTACCTGTTGTTACAGAAAAGTGGTCTAATAAT--CGGTGATTTT-GACATCTa
gi|4 : -GTGATGAAT--TGTATT----ATACAATTCAGT-GTTGAAAAATTGCTTTAAA-ACTTACTACGTGAGAGTAA-TATATATTTTGT-AAAAATATTCAGCATTGCATATGTTCACGCATGAGTTTAAAAA-GAAaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggtgtgatgaattgtattatacaattcagtgttgaaaaattgctttaaaacttactacgtgagagtaatatatattttgtaaaaatattcagcattgcatatgttcacgcatgagtttaaaaagaa
gi|5 : ttgtaggcgctcagatttcatagcgttgtaagttaccactataaaatttacataaaagattctcgaatgacagaacttaatgtgagtttcattattgcattcataactggcttgatttttataagatcaaacaaacatatatagtgtatattttgacgcttataggtgttaaatggcagcataataagagggtgtacctgttgttacagaaaagtggtctaataatcggtgattttgacatctaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggt--------GCTTGC-TTGTAGGCCCCC-----------------------------------TT-----C-AT-A---------------------GC-TGA---AATTTA-TATGAA-TT-----TATTA----C----------T----------------ACA----------TTAATAA-T---GTCT-TCTTTTT--ATAAGA-TTT-----TG--A--AA--AA--C------------A----TATTTTG-TGCTTGTT-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TTATAACAGAAAAGTGTC-TAA-AAA--T-GTGATTTT-GACATCTTT-AGTGGAC-ATTTT---AAACACTTTACTTGCGATTTCTTGA-TCAAGATCGATGTT-T-ATACACC-GTAAATATATCAATATCAA---A-TGTTA-CAATCTGC-AT-GC-AAA--ACATCTATCTTGT----TCAAAACGTTGCAAA--TATCTAACTGGTG--AAAAAAACTTTCGAAAAATGCA---CA---TTT---TCCTCCAAAACTTTCGCATTGACGTCATACCTTTGTG--TAG----TTGTA-TGGCGTACATTGG---ATGTT-A---AGATGAATG--CATG-GTGATCAATGTTACGTTGGATATATAGTTT-GT-CATGAAAA--TACCTTAAA-AC-CACTA--------TGATTATAT--TTTGT-A-------TT-ACAT----TATGTCCACA-AT--GGTTTGAAATGAAGAAATCTGTAG-ACACGA-
gi|6 : GTGT------AAAGG------ACTATATAGGGTATCATATGCTGCTTGC-TTGTAGGCCC------TTCATCCT--CG-A---T-------TAAAAGTTGGTGAA-AT-AAA-------------------GA-TGA---AATT----ATGAG-TT-----TATCG----T----------T----------------GCA----------TTTCTAAAT---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--AA--AA--A------------A----CA-ATAG-TGCTTGTA-GTG-TAACGGGGTC---AT--TAA----GT-CACCT-TGGTTACAGAGAAGTGTCTAAAT--A--C-G-AATTTT-GACA-CCTTTAGTGGAC-A-TTT---AAA
gi|7 : gattatataaaaagggaattagaattaatttacatcacttatatcataaaaaaactcagtgaatacaaggtagaacttattcagatctaaaaataatggtgaaaattttgttctatgttcggtcccaaatagtcccacttaacaaagaatgaatgcgtaacattctactcctaattttaatcttacatctaactctaattttacatgttactttaaaattatacttaaaaaaaggtttaactttacacatcacgatcttaaa------------A----TATATTG-TGCTTGTA-GTG-TGAATAGGTTA--TT--TGG----TT-CACCT-TGGTTACAGAAAAATGT----GTAAAGTC-ATACTATT-GACATCTTTAAG--AACGATTTT---ATGTACTT-----GCGATTTCTTGA-TCAAGATCAATATTC--ACACACC-ATAAA------AAT--------------------CTGC-AT-GA-AAAGAATATTTATCTTGT----TCAAAACGTCACAGA--TA----ATCGGTG--AAAAAAGCCTTCGAAAGATATG---AA---CTT---TCTTCCATAACTTACATATCGACGTCATACTTCCGTGTACATGTAGTTGTA-TACCGTACATTG---TACGTC-A---TGATGAGTG--CATG-GTTATCAATGTTGTATTG
gi|8 : tttaaactttaatgTGT------AAAGA------ACTATATAGGGTAA--------GCTTGC-TTGTAGGCCCCC----TTCGTAGC--TT-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---GATTTA-TGTGAG-TT-----CATTA----TAAAGACATTAT---------------TACATTATTAATATTTCATAA-T---GTCT-TATTTTT--ATAAGA-TTT-----TG--A--AAATAA--A------------A----TA-TTTG-CGCTTGTA-GTG-CAGGTGACTTA--AT--AAA----TT-CACCT-TGG-AACAGAAAAGTGT-CTAA-AAA--C-GTAATTTT-GATATCTTTT-GTGGAC-ATTT
gi|9 : aagcttcatcctttcgtaattctatacatgatgtttaaaatatataactaaatttaccaaaatTGTATATACTAGCC-------TACAACTGCAAAAATACA---TGTTGTACTCGCTAAATTCGGGGTAAA-TAACCT---T-TTTAAGAAGTTCTCTAAAAGTATATCATT-GTAACAATAGGCTATATGTGTGCATAAAATTTACAATTGCACTAT-T-GATTCGGAATAAAAA-ACTATGTGACGCCAT-TT-GTTGGCTA-ACAGTT-TAGTATG-------------------GAAAATGCGAATT-------------------CTTC-ATTACCTGCTA-TTTGATTTATTAATTATTTT--TAAATAGCTTAGACATATTAAATAAG--AAAATTGTAGTTTAGATTACAGGAGCATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GAGTTAATTGCGTACCTTGTTTACTACCTAAAAACTTCTAAAAATACCAATGTCAACATCTTTTTCATCAATTTTTGAGTTGC
Unaligned ( gi|22 ): TTTTGAGTTTTCATCAGCTTCTGTGAGATGCTTAGTTCTGAATAAACACGTTGTCGTTGAACTACATGTT
Alignments
lowQualScore : 1 3333333 222222 11111111 11111 1111111 11111 22222222222222222 11111 777777777777777777777777777777777777777777777 11111 33333333333333333333 111 11 1 11111 2 222 111111 111111 11 1111 111111111 111 111 111 1 1111 22 111 11111111 11 11 1 22222222 11 2222222 1111 11 1 1 111 22222 4444444444 1111 11 11 222222 1 1 111 33333333 222 1 111 1111111111 33333333333333333333333 3333 1 22222222222222 11 1 11 1 11
lowQualScore : 5 5555555 333333 88888888 4 00000 0 9999999 4444444 2 11111 4 4 88888888888888888 4 777 55 5 77777 111111111111111111111111111111111111111111111 8 777 4 4 99 0 99 11111 66 66 66 11111111111111111111 7 66 0 4 4 4 55 666 8888 4 4 444 33 55 4 3 1 3 777 22222 1 3 888 5 666666 111111 5 0 5 5 5 33 0000 0 222222222 77 3 0 111 111 111 0 1 99 4444 22 666 66666666 22 5 5 1 0 8 8 11 8 3 99999999 0 0 33 8 6666666 8 7777 8 11 8 3 0 0 6666 777 55555 3333333333 3 2 5 8 9999 6 6 6 77 6 11 0 888888 0 2 0 0 777 55555555 222 0 0 5 111 6 3 6666666666 5 3 66666666666666666666666 2 999 1111 6 6 1 3 7 6 2 777 99 7 3 00000000000000 11 8 1 0 3 33 1 0 5 88
lowQualScore : . ....... ...... ........ . ..... . ....... ....... . ..... . . ................. . ... .. . ..... ............................................. . ... . . .. . .. ..... .. .. .. .................... . .. . . . . .. ... .... . . ... .. .. . . . . ... ..... . . ... . ...... ...... . . . . . .. .... . ......... .. . . ... ... ... . . .. .... .. ... ........ .. . . . . . . .. . . ........ . . .. . ....... . .... . .. . . . . .... ... ..... .......... . . . . .... . . . .. . .. . ...... . . . . ... ........ ... . . . ... . . .......... . . ....................... . ... .... . . . . . . . ... .. . . .............. .. . . . . .. . . . ..
lowQualScore : 5 8888888 000000 11111111 0 11111 7 1111111 4444444 3 11111 4 4 22222222222222222 4 888 11 0 55555 111111111111111111111111111111111111111111111 9 888 4 8 11 1 00 11111 11 11 11 88888888888888888888 2 11 7 0 0 1 55 666 5555 0 0 000 88 55 0 6 2 6 000 55555 6 2 000 7 444444 666666 7 7 7 7 7 66 6666 7 666666666 99 0 1 777 777 777 7 7 88 2222 88 333 00000000 77 0 0 0 8 0 0 00 0 6 00000000 8 8 66 0 0000000 0 0000 0 00 0 8 0 0 8888 555 00000 8888888888 2 5 0 0 3333 7 7 7 55 7 00 8 444444 7 5 0 0 555 88888888 000 8 6 6 777 7 2 5555555555 2 2 22222222222222222222222 5 333 3333 7 7 0 3 8 7 2 555 22 3 7 55555555555555 00 0 0 0 2 88 0 2 5 55
consensus : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--AA--AA--A------------A----TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAA--C-GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCT-ACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTACGTC-A---TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGAAATTGTGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TTTGTA-AG-TTAAA-TTTACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-TTGATTCGGAATAAAAC-A-TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TC--AGTGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
Reference ( family-2559 ) : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--AA--AA--A------------A----TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAA--C-GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCT-ACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTACGTC-A---TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGAAATTGTGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TTTGTA-AG-TTAAA-TTTACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-TTGATTCGGAATAAAAC-A-TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TC--AGTGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
gi|1 : GTGTAAAAAT-GTTTGTG-------AAAGA------ACTATATAGGGTAT--------GCTAGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-ATTAAAAG----CT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTTTATAAAAATTT-----TG--A--AA--AA--A-----------------TATTTTG-CGCTT-TA-GTG-TAAAGGGCTTA--AT--AAA----GT-CACCT-TGGTTACAGAAAAGTGTCCCAACAAA--C-GTGATTTTTGACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCTTACACACCTGTAAA------AATATCAA---A-TGTTA-AAATATGCCAT-GC-AAA--ATATCTATCTTGT----TCAAAAAGTCGCACA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATTGACGTCATACCTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTAGATCTATATTGATGAATGCACATGCGTGATCAATGTTGCGTTGGAAATATAATTC-AT-CGTGGAAA--TACTTTGAACACTTACTA--------TAATTATATA-TGTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAGGAAATCCGTAGAACCCGATGTGCAATCAGAAATTGTGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGCGGCGGATAAAGACTGTTTTGTA-AGTTTAAATTTTACTTCAAACATTGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAACTGTTTGCGATCACCGAGTTTATGTAAATATTACATACAGACCGTACGTGTTTTACAACGTTGTTT-ACAAGTCTTGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATAT--TGTTGTATTCGCTAAC-TCGTGGTAAAATAACCTAGCTGTTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-ATGATTCGGAATAAAACTA-TATGTGACGTCAT-TT-GTCGGCTATACAATT-TAGTATGGAACACC-GTTAC-GTGTAG-AAATACGATTT----TC--AGTGTCATA--TTTC-AGTACCTGCTATTTTGATTTATTACGTATTTT--CAAAAAGCTTAGATATATTAAAT-AGTTAAAATTGTAGTTTAGATTACAGGAGTATTA
gi|10 : aaGTATAAAAATTGCTTATGCTATTTGAAAGATATTACACTATATA----------------TTGC-TTGTAGACCCCA----T-CAAAGC--TG-AATTT-------TATTCCTA-----A-AG-AAAAG----CT-----------GA-TGA---AATGCA-TATGAGATTGATCACATTACGTCT----------TCAACACCTTCCCAAATGAG----------TTCATGA-TCACATTTATATTGTTC-A----A-TTTTTATGTG--ACTAA--AACCC------------A----TGCTTGG-GGTTTTAA-GCG--GAGGAGATCA--AA--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCTTAA
gi|11 : TTGCCTTGTAGGCCCC--------------------TTT-------TCATCCTC-----G-AT-AAAAG----TTGGTGAAATAAAGA-TGA---AATTTA---TGAG-TT-----TATCG---------------T---------------TGCA----------TTCATAA-T---GTCT-TA-TTTTC-ATAAGA-TTT-----TG--A--AA--AAC-A------------A----TA----G-TGCTTGTA-GTG-TAACGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAGAAGTGTCTAAAT--A--C-GGAATTTT-GACA-CCTTTAGTGGAC-ATTTC---AA
gi|12 : TGCAATCAGACATTGTGTG---ATCATTGCATTGTTGTTTTAATGTTTATTTTTCTTCGCCGATCACGATCATTAGGC-GTGGATAAAGACTG--TTGTA-AG-TTAAA-TTTACTTCAAACATCGAT-GATT-AATAGAAAATATTCAATAACACTTTTAGATGATATTGTATTTAAATCCTATATTATATATTTCTTAAAAAGCTGTTTGCGAT
gi|13 : CT---T-TTTAAAATGTTCTCTAAAATTATGCCA---GT-T---TA-ACAATAT----------------CAAT--CA-TGC-T--ATTCGGAATAAAAC---TATGTAATGTAAT-TT-GGCGTCTATACA-TC-TAGTATGGAACGCC-G-TAA-TTGTAGAAAATATGAATTTTAATT--AATGTAATA--TTTT-TATAGCTTCTA-TGTAATT-----CGTATTGTCGTAATCGGCGAAGAAAAATTAA
gi|14 : t-T---GTCT-TA-TTTTC-AGAAGA--AT-----TGAAA--AA--AA--A------------A----TATTTTG-TGCTTGTA-GGG-TAAAGGGGTCA--AT--TAC----GT-CACCT-TGGTTACAG--AAGTGT-CTAAAAAA--C-GCAATTTT-GACATCTTTT-GTAGCC-ATTTTGTGAGATGCTT-----GAG--TTC-TGAATAAA
gi|15 : CTGCAAATATGAAAGCTGTTGTACTCTCTAAGTTCGTGGTAAGCTAACCT---T-TTTAAC--GTTCTCTCGAACT-------------------------T-TTTG---------TG--AT-------T-TTGATTCGGAATAAAA--A-CA----ATGTCAT-TTTGTCGTCTA-ACAGTT-TAGTATGGAACGCCAG-TACTTTGTAGAAAATA-GAATT----TC--AATGT-accacgttgtcgttgaactgtacatgtt
gi|16 : tGT----TCAAAACGTCGCGCA--GAT--AACCGGTG--AAAAAATCTATCGAAAAATATG---CA---TTT---TCCTCCATAACTTTCATAGCGCCGTCATACTACCGTG--TAG----TTGTA-TGCCGTACGCTG---TACGTC-A---TGATGAATG--CATG-GTTATCAATGTAGTGTTG
gi|17 : ttgTTCTTACACATC-GTAAA------TATATCAACTAACTGTAA-AAATCTGC-AT-GC-AAA--ATTTCTATCTTCT----TTAAAACGTCGCCAA--TACTTAACCGGCGAAAAAAAACCTTTCAGATAACA
gi|18 : taaatTTTAGTGGAC-ATTTT---AAACACTT-----GTAATCTCTTGA-TCAATATCGATATT-T-ACACATC-GTAAA------TATATCAA---A-TGTTA-AAGTCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAagaa
gi|19 : tcTTGTA-AG-TTAAA-TTTACTTCAAACATCG-TTGATT-AATAGAAAATATTCAAGAACACTTTTAGATGATAATGTA--CAAATCCTATA-----TATTTCTTAAAAAGCTGTTTG
gi|2 : ATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T----------------GCA----------TTCATAA-T---GTCT-TATTTT-C-ATAA-----T-----TA--A--AA--AA--A------------AAAAATATTTTG-TGCTTATA-GCG-TAAAGGGCTTA--AT----A----GT--AGAT-TGGGTTCG---AAGTGTC-TAA-AAA--C-GTGATTTT-GACATCTTT-AGTGGGC-ATTT----AAACACTT-----GCGATTTCTTGA-TCA-GATCGATATT-T-ACACCCC-GTAAA------AATATCAA---A-TGTTA-AAATATGC-ATCGCCAAA--ATATCTATCTTGTCGTATCGGAAAGTCGTA------------CGGCA--A----------CGATAAACACGGCTCAAACTCTGACTTCTCAATAATT---GCATTGACGT-ATACT--CGTGTCTAT----TTGTAT-GCCGTACACTGGACTAC----A---TGATGAATGCACATG-GTGATCAATGTTGTGTTGGAAAT-TAATTC-AT-CGTGAAAA--TACTTTTAA-AC--ACTA--------TAATTAT----TTTGTGA-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAT-GA-GAAATCCGTAG-ACCCGA-GTGCAACTAGAAAATGTGTGGTGATCATTG-----TTGTTTT----------TT-CTTTGC-GATTACGATAATTAGGT-GCGGATAAAGACTG-TG-GTATAG-TTAAA-TT-ACTTCAAACA-CGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGAGAATGTA--TAA-TCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCTCCGAGTTTATGTAAATATTACATACAGA-CGTACGTG-TTTAAAACGTTATTTAACAAG---TGCGGTTTGTTGCATGTACTAGCC-----------ACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCT-AATTTATATCATTCGAAT---TAGGCTAT-TATTCG---------TGCA----AACTAA-TTGATT-GGAATAAAAC---TATGTG--GATATATT-GT-GGCTA-GCATTTATAGTATGGAACACC-G-TAC-GTGTAG-AAATACGAATT----TCGAGGTGT-ATA--CTTCGATT
gi|20 : ATTACGAT---TAGGA-GCGGATAAAGGATG-TT-GTA-AG-TTACA-TTTACTTCAAACATCGAT-GATTGAATAGACAAGAGTCAATAACACttaggcaatttctaataagttaacgggataatcacaaaaattaa
gi|23 : tATAGGGTAT--------ACTTGC---------CTCT----TTAATAGC--TA-TATTT-------TAATCCTG-----A-AT-GAAAA----TT-----------AA-TGA---AAT
gi|24 : TTTT-GACATCTTT-AGTGGAC-ATTGT---AAACACTT-----GCGATTTCTTG-ATCAAGATCGA
gi|25 : GA------ACTATATAGTGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--
gi|26 : TACAAACCGTACGTG-TTTACAGCGTTGTTT-ACAAG---T
gi|27 : -A---TGATGAATGCACATG-GTGATCAATG
gi|3 : ctatA--C-GTGATTTT-GACATCTTT-AGTCAAC-ATTTT---AAACACTT-----GCGATTTCTTGA-TCA-GATCGATATT-T-ACACACC-GTAAA------AATATCAA---A--GTTAGAAATATGC-AT-GC-AAAG-ATACCTATCTATT----TCAAA--GTCGCAGAGATATCTAAACCGCG--AAAAAACCTTTCGAAAAAC------CA---TTT---TCCTCCATATCTTTCGCATTGACGTCATACT-CCGTGTCTAT----TTGTAT-GCC-TACACTGGACTAC----A---TGATGAATGCACAGT-GTGATCAATGTTGCGTTG-AAATATAATTC-ATTCGTGAAAA--TACTTTACA-AGCTACGA--------TAATTATATA-TTTGT-A-------TC-ACAT----TGTGTTCACG-AT--GTTTTGAAA-TGAGAAATCCGTAG-ACCCGA-GTGCAATCAG------TGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TT-GTA-AG-TTAAA-TTTACTTCAAACATCGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAGATATTGCGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCCTTATATATACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAAGCTATATATGTG---------TGCA----AACTATATTGATTCGGAATAAAAA-C-TATGTGACATCAT-TT-GTCAGCTA-ACAATT-TTGTATGGAACACC-G-TAC-GTGTAGAAAATATGAATT----TC--AGTGTCATATTCTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAAAAGTTTAGACATA
gi|4 : -TTGTAGGCGCTCAGATTTCATAGCGTTGTAAGTTACCACTATAAAATTT-----ACAT-AAAAGATTCTC-----------GAATGACAGAACTTAATGTGAG-TTT----CATTA----T----------T----------------GCA----------TTCATAACT---GGCT-TGATTTTT-ATAAGA---T-----CA--A--AC--AA--ACATATATAGTGTA----TATTTTGACGCTTATAGGTGTTAAATGG--CAGCATAATAAGAGGGTGTACCTGTTGTTACAGAAAAGTGGTCTAATAAT--CGGTGATTTT-GACATCTa
gi|4 : -GTGATGAAT--TGTATT----ATACAATTCAGT-GTTGAAAAATTGCTTTAAA-ACTTACTACGTGAGAGTAA-TATATATTTTGT-AAAAATATTCAGCATTGCATATGTTCACGCATGAGTTTAAAAA-GAAaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggtgtgatgaattgtattatacaattcagtgttgaaaaattgctttaaaacttactacgtgagagtaatatatattttgtaaaaatattcagcattgcatatgttcacgcatgagtttaaaaagaa
gi|5 : ttgtaggcgctcagatttcatagcgttgtaagttaccactataaaatttacataaaagattctcgaatgacagaacttaatgtgagtttcattattgcattcataactggcttgatttttataagatcaaacaaacatatatagtgtatattttgacgcttataggtgttaaatggcagcataataagagggtgtacctgttgttacagaaaagtggtctaataatcggtgattttgacatctaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggt--------GCTTGC-TTGTAGGCCCCC-----------------------------------TT-----C-AT-A---------------------GC-TGA---AATTTA-TATGAA-TT-----TATTA----C----------T----------------ACA----------TTAATAA-T---GTCT-TCTTTTT--ATAAGA-TTT-----TG--A--AA--AA--C------------A----TATTTTG-TGCTTGTT-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TTATAACAGAAAAGTGTC-TAA-AAA--T-GTGATTTT-GACATCTTT-AGTGGAC-ATTTT---AAACACTTTACTTGCGATTTCTTGA-TCAAGATCGATGTT-T-ATACACC-GTAAATATATCAATATCAA---A-TGTTA-CAATCTGC-AT-GC-AAA--ACATCTATCTTGT----TCAAAACGTTGCAAA--TATCTAACTGGTG--AAAAAAACTTTCGAAAAATGCA---CA---TTT---TCCTCCAAAACTTTCGCATTGACGTCATACCTTTGTG--TAG----TTGTA-TGGCGTACATTGG---ATGTT-A---AGATGAATG--CATG-GTGATCAATGTTACGTTGGATATATAGTTT-GT-CATGAAAA--TACCTTAAA-AC-CACTA--------TGATTATAT--TTTGT-A-------TT-ACAT----TATGTCCACA-AT--GGTTTGAAATGAAGAAATCTGTAG-ACACGA-
gi|6 : GTGT------AAAGG------ACTATATAGGGTATCATATGCTGCTTGC-TTGTAGGCCC------TTCATCCT--CG-A---T-------TAAAAGTTGGTGAA-AT-AAA-------------------GA-TGA---AATT----ATGAG-TT-----TATCG----T----------T----------------GCA----------TTTCTAAAT---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--AA--AA--A------------A----CA-ATAG-TGCTTGTA-GTG-TAACGGGGTC---AT--TAA----GT-CACCT-TGGTTACAGAGAAGTGTCTAAAT--A--C-G-AATTTT-GACA-CCTTTAGTGGAC-A-TTT---AAA
gi|7 : gattatataaaaagggaattagaattaatttacatcacttatatcataaaaaaactcagtgaatacaaggtagaacttattcagatctaaaaataatggtgaaaattttgttctatgttcggtcccaaatagtcccacttaacaaagaatgaatgcgtaacattctactcctaattttaatcttacatctaactctaattttacatgttactttaaaattatacttaaaaaaaggtttaactttacacatcacgatcttaaa------------A----TATATTG-TGCTTGTA-GTG-TGAATAGGTTA--TT--TGG----TT-CACCT-TGGTTACAGAAAAATGT----GTAAAGTC-ATACTATT-GACATCTTTAAG--AACGATTTT---ATGTACTT-----GCGATTTCTTGA-TCAAGATCAATATTC--ACACACC-ATAAA------AAT--------------------CTGC-AT-GA-AAAGAATATTTATCTTGT----TCAAAACGTCACAGA--TA----ATCGGTG--AAAAAAGCCTTCGAAAGATATG---AA---CTT---TCTTCCATAACTTACATATCGACGTCATACTTCCGTGTACATGTAGTTGTA-TACCGTACATTG---TACGTC-A---TGATGAGTG--CATG-GTTATCAATGTTGTATTG
gi|8 : tttaaactttaatgTGT------AAAGA------ACTATATAGGGTAA--------GCTTGC-TTGTAGGCCCCC----TTCGTAGC--TT-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---GATTTA-TGTGAG-TT-----CATTA----TAAAGACATTAT---------------TACATTATTAATATTTCATAA-T---GTCT-TATTTTT--ATAAGA-TTT-----TG--A--AAATAA--A------------A----TA-TTTG-CGCTTGTA-GTG-CAGGTGACTTA--AT--AAA----TT-CACCT-TGG-AACAGAAAAGTGT-CTAA-AAA--C-GTAATTTT-GATATCTTTT-GTGGAC-ATTT
gi|9 : aagcttcatcctttcgtaattctatacatgatgtttaaaatatataactaaatttaccaaaatTGTATATACTAGCC-------TACAACTGCAAAAATACA---TGTTGTACTCGCTAAATTCGGGGTAAA-TAACCT---T-TTTAAGAAGTTCTCTAAAAGTATATCATT-GTAACAATAGGCTATATGTGTGCATAAAATTTACAATTGCACTAT-T-GATTCGGAATAAAAA-ACTATGTGACGCCAT-TT-GTTGGCTA-ACAGTT-TAGTATG-------------------GAAAATGCGAATT-------------------CTTC-ATTACCTGCTA-TTTGATTTATTAATTATTTT--TAAATAGCTTAGACATATTAAATAAG--AAAATTGTAGTTTAGATTACAGGAGCATTA
blockSeqs : T CTATTTG TATTAC CATATGCT C CAGAT GTTGTAA ACCACTA T GGTGA C . TTGGTGAAATAAA A CAG AT A GATCA TAAAGACATTATTACATTATTAATAT C CAC A T C T TTATG AA CT AT ACATATATAGTGTA C AC G T A GC AAT GAGG G G CTT AA GT G . T G GTG TACTT A A CTT . TATATC CTAACT G . C C GA CGTA GAGATATCT AA T GCT AAC GAC A TC GTAG T GAC GTCA CA . G A A T AT . C CGTGAGAG AT G AAAATAT A TGCA C GA T A . . ACAT GTG CATTG AATGTTTATT T C C . TT T . . TG G TT TTATAT C . A . TTATATAT AGC A C . . A TTGTAACAA G A GTGTGCATAAAATTTACAATTGC C ATT AAC A T C T G A G AG TT A T TTAATTAATGTA TT G A . T CG C A .
blockSeqs : T . . . A TGAA . T . . . ATTCTC . . T . T CGTCTTCAACACCTTCCCAAATGAG A . . T C T . . . . AAAAAA T G . . G . T . . . CTA TA . . . T . . . A A T . . AT . . . . G . AATACTT . C . . . T TC . T GAC GTTA CA . G A . . . . T . A . . . . . . . A . . AAAA . . . T C A . TG . . . G . . T C . . . T . A A . . C TTCGAAT A A ATTCGTGCAA C TT AC . . C . T . G G T A C TCGAGGTGT . . T . T . A
blockSeqs : T . . . C TGAA . A . . . CT . . T . . TTGCA . . . A C T . . . . CCCA T T . . G . T . . . TCT TA . . . T . . . . A T . . AT . . . . . . AATATCT . C . . . T TA . T G GTCA CA . . T . . . . . . . . . . . . . . A . . . . . . . . C . TT . . . G . . T . . . . . . . A . . A TTGTAT G A ATGTGTGCAA C TT C . . C . A . A G G A T TCAGTGTC . . T . . . T
blockSeqs : . . . T TATA . T . . . TT . . T . . TTGCA . . . T C T . . . . CAA T T . . C . T . . . CTA T . . . T . . . . A T . . AT . . . . . . CAGAT . A . . . . . . T . A . . . . . . . . . . . . . . . . . . . . . TT . . . G . . T . . . . . A GTT . . TTTGTGAT . T A . . T . G . A G G A C TCAATGT . . T
blockSeqs : . . C TTAA . A . . . TT . . T . . TTGCA . . . T T T . . . . AA T T . . G . T . . . CT A . . . A . . . . A T . . A . . . . . . GATA . G . . . . . . T . A . . . . . G . . . . . . . CAATC . T C . . . . . . . . . . . .
blockSeqs : . . C CGA . A . . . TT . . . . . CTACA . . . T C . . . . . CA T T . . G . T . . . CT A . . . T . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . C . . A . . . . . . . . . TTGCA . . . . . . . . . . AA . T . . G . T . . . CT T . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . AA . T . . C . A . . . CT A . . . . . .
blockSeqs : . . . C . . . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : TTGCA**************************************** C* T* AA****************** CT* A* T** T* GTCA**** A* TT** G* T***** *** *** TTGTAT**** GTTCGTGCAATC*********** C*** G** TCGATGT*******
originalCons : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTA----T----------T---------------TGCA----------TTCATAA-T---GTCT-TATTTTTC-ATAAGA-TTT-----TG--A--AA--AA--A------------A----TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCCTAATAAA--C-GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCT-ACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTATTGCCGTACACTGGACTACGTC-A---TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGAAATTGTGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG-TTTGTA-AG-TTAAA-TTTACTTCAAACATCGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT----TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-TTGATTCGGAATAAAAC-A-TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TC--AGTGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
finalCons : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAG-TT-----CATTATTGCA----------------------------------------TTCATAA-T---GTCT-TATTTTTC-ATAAGAT-TT-----TG--A--AA--AAAA------------------TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGTGTCT-AAA-AA--C-GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTT--ACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTGTAT-GCCGTACACTGGACTACGTCA----TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGAAATTGTGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTGTT--GTA-AG-TTAAA-TTTACTTCAAACATCGATG-ATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCCTATAT-----ATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATTGTAT----TAGGCTATATGTTCGTGCAATC-----------ACTAT-TTGATTCGGAATAAAAC---TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCCG--TAC-GTGTAGAAAATACGAATTTCGATGT-------ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GAGTTAATTGCGTACCTTGTTTACTACCTAAAAACTTCTAAAAATACCAATGTCAACATCTTTTTCATCAATTTTTGAGTTGC
Unaligned ( gi|22 ): TTTTGAGTTTTCATCAGCTTCTGTGAGATGCTTAGTTCTGAATAAACACGTTGTCGTTGAACTACATGTT
Alignments
lowQualScore : 1 3333333 222222 11111111 11111 1111111 11111 22222222222222222 22222222222 1111111111 11 11 33333333333333333 1 11111 2 111111 111111 11 1111 111111111 111 111 111 1 1111 1111 111 11111111 11 11 1 22222222 11 2222222 1111 11 1 1 111 22222 4444444444 11 22222 1 1 111 33333333 222 1 111 111 33333333333333 2222 11111 1 22222222222222 11 1 11 1 11
lowQualScore : 5 5555555 333333 88888888 4 00000 0 9999999 4444444 2 11111 4 4 88888888888888888 4 777 55 55555555555 4 4 9999999999 1 8 4 44 00 66 66 4 11111111111111111 4 0 66 0 4 4 4 55 666 8888 4 4 4 8 4 55 3 1 3 777 22222 1 3 77 5 666666 111111 5 0 5 5 5 33 0000 0 222222222 77 3 0 111 111 111 0 1 55 2222 2222 5 666 66666666 22 5 5 1 0 8 8 11 8 3 99999999 0 0 33 8 6666666 8 7777 8 11 8 3 0 0 6666 777 55555 3333333333 3 2 5 8 99 6 6 6 6 6 11 0 00000 8 0 2 0 0 777 55555555 222 0 0 5 111 6 0 0 8 0 444 0 99999999999999 6666 999 6 22222 6 6 1 3 7 6 2 777 99 7 3 88888888888888 11 8 1 0 3 33 1 0 5 88
lowQualScore : . ....... ...... ........ . ..... . ....... ....... . ..... . . ................. . ... .. ........... . . .......... . . . .. .. .. .. . ................. . . .. . . . . .. ... .... . . . . . .. . . . ... ..... . . .. . ...... ...... . . . . . .. .... . ......... .. . . ... ... ... . . .. .... .... . ... ........ .. . . . . . . .. . . ........ . . .. . ....... . .... . .. . . . . .... ... ..... .......... . . . . .. . . . . . .. . ..... . . . . . ... ........ ... . . . ... . . . . . ... . .............. .... ... . ..... . . . . . . . ... .. . . .............. .. . . . . .. . . . ..
lowQualScore : 5 8888888 000000 11111111 0 11111 7 1111111 4444444 3 11111 4 4 22222222222222222 4 888 11 66666666666 4 4 4444444444 9 0 8 77 77 11 11 4 99999999999999999 9 7 11 7 0 0 1 55 666 5555 0 0 0 0 0 55 6 2 6 000 55555 6 2 99 7 444444 666666 7 7 7 7 7 66 6666 7 666666666 99 0 1 777 777 777 7 7 77 1111 1111 7 333 00000000 77 0 0 0 8 0 0 00 0 6 00000000 8 8 66 0 0000000 0 0000 0 00 0 8 0 0 8888 555 00000 8888888888 2 5 0 0 22 7 7 7 7 7 00 8 00000 0 7 5 0 0 555 88888888 000 8 6 6 777 7 8 8 0 8 000 8 22222222222222 6666 333 7 55555 7 7 0 3 8 7 2 555 22 3 7 33333333333333 00 0 0 0 2 88 0 2 5 55
consensus : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAGTT-----------CATT-ATT-GCA----------TTCATAA-TGTCTTATTTTTC-ATAAGA-TTTTG--AAA--AA-A------------A----TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGT-GTCT-AA-AAAC--GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATT--TACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTG----TA-TGCCGTACACTGGACTACGTC-A---TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGAAATTGTGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG--TTGTA-AG-TTAAA-TTTACTTCAAACATCGAT-GATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCC-----TATA-TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTNTG---------TGCAAT--CACTAT-TTGATTCGGAAT-AAAA--C--TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TCAA--TGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
Reference ( family-2559 ) : NNGTGTAAAAATTGCTTGTGT------AAAGA------ACTATATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAGTT-----------CATT-ATT-GCA----------TTCATAA-TGTCTTATTTTTC-ATAAGA-TTTTG--AAA--AA-A------------A----TATTTTG-CGCTTGTA-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAAAAGT-GTCT-AA-AAAC--GTGATTTT-GACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATT--TACACACC-GTAAA------AATATCAA---A-TGTTA-AAATCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAAACGTCGCANA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATCGACGTCATACTTCCGTGTCTAT----TTG----TA-TGCCGTACACTGGACTACGTC-A---TGATGAATGCACATG-GTGATCAATGTTGCGTTGGAAATATAATTC-GT-CGTGAAAA--TACTTTAAA-ACTTACTA--------TAATTATATA-TTTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAAGAAATCCGTAG-ACCCGA-GTGCAATCAGAAATTGTGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG--TTGTA-AG-TTAAA-TTTACTTCAAACATCGAT-GATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCC-----TATA-TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAAATATTACGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGTAAAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTCG---------TGCAAT--CACTAT-TTGATTCGGAAT-AAAA--C--TATGTGACGTCAT-TT-GTCGGCTA-ACAGTT-TAGTATGGAACGCC-G-TAC-GTGTAGAAAATACGAATT----TCGA--TGT-ATA--CTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAANAGCTTAGACATATTAAATAAGTTAAAATTGTAGTTTAGATTACAGGAGCATTA
gi|1 : GTGTAAAAAT-GTTTGTG-------AAAGA------ACTATATAGGGTAT--------GCTAGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-ATTAAAAG----CT-----------GA-TGA---AATTTA-TGTGAGTT-----------CATT-ATTTGCA----------TTCATAA-TGTCTTATTTTTTTATAAAAATTTTG--AAA--AA-A-----------------TATTTTG-CGCTT-TA-GTG-TAAAGGGCTTA--AT--AAA----GT-CACCT-TGGTTACAGAAAAGT-GTCCCAACAAAC--GTGATTTTTGACATCTTTTAGTGGAC-ATTTT---AAACACTT-----GCGATTTCTTGAATCAAGATCGATATTCTTACACACCTGTAAA------AATATCAA---A-TGTTA-AAATATGCCAT-GC-AAA--ATATCTATCTTGT----TCAAAAAGTCGCACA--TATCTAACCGGCG--AAAAAACCTTTCGAAAAACACG---CA---TTT---TCCTCCATAACTTTCGCATTGACGTCATACCTCCGTGTCTAT----TTG----TATTGCCGTACACTGGACTAGATCTATATTGATGAATGCACATGCGTGATCAATGTTGCGTTGGAAATATAATTC-AT-CGTGGAAA--TACTTTGAACACTTACTA--------TAATTATATA-TGTGT-A-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAA-GAGGAAATCCGTAGAACCCGATGTGCAATCAGAAATTGTGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGCGGCGGATAAAGACTGTTTTGTA-AGTTTAAATTTTACTTCAAACATTGATGGATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCC-----TATATTATTTCTTAAAAAACTGTTTGCGATCACCGAGTTTATGTAAATATTACATACAGACCGTACGTGTTTTACAACGTTGTTT-ACAAGTCTTGCGGCTTGTTGCATGTACTAGCC-------TACAACTGCAAAAATATAT--TGTTGTATTCGCTAAC-TCGTGGTAAAATAACCTAGCTGTTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAGGCTATATGTTTG---------TGCAAT--AACTAT-ATGATTCGGAAT-AAAA--CTATATGTGACGTCAT-TT-GTCGGCTATACAATT-TAGTATGGAACACC-GTTAC-GTGTAG-AAATACGATTT----TCAG--TGTCATA--TTTC-AGTACCTGCTATTTTGATTTATTACGTATTTT--CAAAAAGCTTAGATATATTAAAT-AGTTAAAATTGTAGTTTAGATTACAGGAGTATTA
gi|10 : aaGTATAAAAATTGCTTATGCTATTTGAAAGATATTACACTATATA----------------TTGC-TTGTAGACCCCA----T-CAAAGC--TG-AATTT-------TATTCCTA-----A-AG-AAAAG----CT-----------GA-TGA---AATGCA-TATGAG--------------ATTGATC-ACA----------TT----A-CGTCTT
gi|10 : TGAGTT-----------CATG-ATC-ACA----------TTTATAT-TGTTCAATTTTT--ATGTGA-CT-------A--AA-ACCC---------A----TGCTTGG-GGTTTTAA-GCG--GAGGAGATCA--AA--TAA----GT-CACCT-TGGTTACAGAAAAGT-GTCT-TA-Acaacaccttcccaaatgagttcatgatcacatttatattgttcaatttttatgtgactaaaacccatgcttggggttttaagcggaggagatcaaataagtcaccttggttacagaaaagtgtcttaa
gi|11 : gtataaaaattgcttatgctatttgaaagatattacactatatattgcttgtagaccccatcaaagctgaattttattcctaaagaaaagctgatgaaatgcatatgagattgatcacattacgtcttcaacaccttcccaaaTTGCCTTGTAGGCCCC--------------------TTT-------TCATCCTC-----G-AT-AAAAG----TTGGTGAAATAAAGA-TGA---AATTTA---TGAGTT-----------TATC-GTT-GCA----------TTCATAA-TGTCTTA-TTTTC-ATAAGA-TTTTG--AAA--AACA------------A----TA----G-TGCTTGTA-GTG-TAACGGGGTCA--AT--TAA----GT-CACCT-TGGTTACAGAGAAGT-GTCT-AA-ATAC--GGAATTTT-GACA-CCTTTAGTGGAC-ATTTC---AA
gi|12 : TGCAATCAGACATTGTGTG---ATCATTGCATTGTTGTTTTAATGTTTATTTTTCTTCGCCGATCACGATCATTAGGC-GTGGATAAAGACTG--TTGTA-AG-TTAAA-TTTACTTCAAACATCGAT-GATT-AATAGAAAATATTCAATAACACTTTTAGATGATATTGTATTTAAATCCTATATTATA-TATTTCTTAAAAAGCTGTTTGCGAT
gi|13 : CT---T-TTTAAAATGTTCTCTAAAATTATGCCA---GT-T---TAA-CAATAT----------------CAAT--CA-TGC-T--ATTCGGAAT-AAAA--C--TATGTAATGTAAT-TT-GGCGTCTATACA-TC-TAGTATGGAACGCC-G-TAA-TTGTAGAAAATATGAATTTTAATTAA--TGTAATA--TTTT-TATAGCTTCTA-TGTAATT-----CGTATTGTCGTAATCGGCGAAGAAAAATTAA
gi|14 : t-TGTCTTA-TTTTC-AGAAGA--ATTGAAAAA--AA-A------------A----TATTTTG-TGCTTGTA-GGG-TAAAGGGGTCA--AT--TAC----GT-CACCT-TGGTTACAG--AAGT-GTCTAAA-AAAC--GCAATTTT-GACATCTTTT-GTAGCC-ATTTTGTGAGATGCTT-----GAG--TTC-TGAATAAA
gi|15 : CTGCAAATATGAAAGCTGTTGTACTCTCTAAGTTCGTGGTAAGCTAACCT---T-TTT--AACGTTCTCTaccacgttgtcgttgaactgtacatgtt
gi|15 : tT-TTGATTCGGAAT-AAAA--A--CA----ATGTCAT-TTTGTCGTCTA-ACAGTT-TAGTATGGAACGCCAG-TACTTTGTAGAAAATA-GAATT----TCAA--TGT-cgaactttttgtgattttgattcggaataaaaacaatgtcattttgtcgtctaacagtttagtatggaacgccagtactttgtagaaaatagaatttcaatgt
gi|16 : tctgcaaatatgaaagctgttgtactctctaagttcgtggtaagctaacctttttaacgttctctcgaactttttgtgatGT----TCAAAACGTCGCGCA--GAT--AACCGGTG--AAAAAATCTATCGAAAAATATG---CA---TTT---TCCTCCATAACTTTCATAGCGCCGTCATACTACCGTG--TAG----TTG----TA-TGCCGTACGCTG---TACGTC-A---TGATGAATG--CATG-GTTATCAATGTAGTGTTG
gi|17 : ttgT--TACACATC-GTAAA------TATATCAACTAACTGTAA-AAATCTGC-AT-GC-AAA--ATTTCTATCTTCT----TTAAAACGTCGCCAA--TACTTAACCGGCGAAAAAAAACCTTTCAGATAACA
gi|18 : taaatttcTTTAGTGGAC-ATTTT---AAACACTT-----GTAATCTCTTGA-TCAATATCGATATT--TACACATC-GTAAA------TATATCAA---A-TGTTA-AAGTCTGC-AT-GC-AAA--ATATCTATCTTGT----TCAAagaa
gi|19 : tc--TTGTA-AG-TTAAA-TTTACTTCAAACATCGTT-GATT-AATAGAAAATATTCAAGAACACTTTTAGATGATAATGTA--CAAATCC-----TATA-TATTTCTTAAAAAGCTGTTTG
gi|2 : ATAGGGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--TG-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---AATTTA-TGTGAGTT-----------CATT-ATT-GCA----------TTCATAA-TGTCTTATTTT-C-ATAA-----TTA--AAA--AA-A------------AAAAATATTTTG-TGCTTATA-GCG-TAAAGGGCTTA--AT----A----GT--AGAT-TGGGTTCG---AAGT-GTCT-AA-AAAC--GTGATTTT-GACATCTTT-AGTGGGC-ATTT----AAACACTT-----GCGATTTCTTGA-TCA-GATCGATATT--TACACCCC-GTAAA------AATATCAA---A-TGTTA-AAATATGC-ATCGCCAAA--ATATCTATCTTGTCGTATCGGAAAGTCGTA------------CGGCA--A----------CGATAAACACGGCTCAAACTCTGACTTCTCAATAATT---GCATTGACGT-ATACT--CGTGTCTAT----TTG----TA-TGCCGTACACTGGACTAC----A---TGATGAATGCACATG-GTGATCAATGTTGTGTTGGAAAT-TAATTC-AT-CGTGAAAA--TACTTTTAA-AC--ACTA--------TAATTAT----TTTGTGA-------TC-GCAT----TATGTTCACG-AT--GTTTTGAAT-GA-GAAATCCGTAG-ACCCGA-GTGCAACTAGAAAATGTGTGGTGATCATTG-----TTGTTTT----------TT-CTTTGC-GATTACGATAATTAGGT-GCGGATAAAGACTG--TGGTATAG-TTAAA-TT-ACTTCAAACA-CGAT-GATT-AATAGAAAATATTCAATAACACTTTTAGATGAGAATGTA--TAA-TCC-----TATA-TATTTCTTAAAAAGCTGTTTGCGATCTCCGAGTTTATGTAAATATTACATACAGA-CGTACGTG-TTTAAAACGTTATTTAACAAG---TGCGGTTTGTTGCATGTACTAGCC-----------ACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCT-AATTTATATCATTCGAAT---TAGGCTAT-TATTCG---------TGCAA----ACTAA-TTGATT-GGAAT-AAAA--C--TATGTG--GATATATT-GT-GGCTA-GCATTTATAGTATGGAACACC-G-TAC-GTGTAG-AAATACGAATT----TCGAGGTGT-ATA--CTTCGATT
gi|20 : ATTACGAT---TAGGA-GCGGATAAAGGATG--TTGTA-AG-TTACA-TTTACTTCAAACATCGAT-GATTGAATAGACAAGAGTCAATAACACttaggcaatttctaataagttaacgggataatcacaaaaattaa
gi|23 : tATAGGGTAT--------ACTTGC---------CTCT----TTAATAGC--TA-TATTT-------TAATCCTG-----A-AT-GAAAA----TT-----------AA-TGA---AAT
gi|24 : TTTT-GACATCTTT-AGTGGAC-ATTGT---AAACACTT-----GCGATTTCTTG-ATCAAGATCGA
gi|25 : GA------ACTATATAGTGTAT--------GCTTGC-TTGTAGGCCCCC----TTCATAGC--
gi|26 : TACAAACCGTACGTG-TTTACAGCGTTGTTT-ACAAG---T
gi|27 : -A---TGATGAATGCACATG-GTGATCAATG
gi|3 : ctatAC--GTGATTTT-GACATCTTT-AGTCAAC-ATTTT---AAACACTT-----GCGATTTCTTGA-TCA-GATCGATATT--TACACACC-GTAAA------AATATCAA---A--GTTAGAAATATGC-AT-GC-AAAG-ATACCTATCTATT----TCAAA--GTCGCAGAGATATCTAAACCGCG--AAAAAACCTTTCGAAAAAC------CA---TTT---TCCTCCATATCTTTCGCATTGACGTCATACT-CCGTGTCTAT----TTG----TA-TGCC-TACACTGGACTAC----A---TGATGAATGCACAGT-GTGATCAATGTTGCGTTG-AAATATAATTC-ATTCGTGAAAA--TACTTTACA-AGCTACGA--------TAATTATATA-TTTGT-A-------TC-ACAT----TGTGTTCACG-AT--GTTTTGAAA-TGAGAAATCCGTAG-ACCCGA-GTGCAATCAG------TGTG---ATCATTG-----TTGTTTT----------TTTCTTCGCCGATTACGATCATTAGGC-GCGGATAAAGACTG--TTGTA-AG-TTAAA-TTTACTTCAAACATCGAT-GATT-AATAGAAAATATTCAATAACACTTTTAGATGATAATGTA--TAAATCC-----TATA-TATTTCTTAAAAAGCTGTTTGCGATCACCGAGTTTATGTAGATATTGCGTACAGACCGTACGTG-TTTACAACGTTGTTT-ACAAG---TGCGGCTTGTTGCATGTACTAGCCTTATATATACAACTGCAAAAATATA---TGTTGTATTCGCTAACTTCGTGGT-AAATAACCT---T-TTTAAAAAGTTCTCTAAAATTATATCATT-GTAT---TAAGCTATATATGTG---------TGCAA----ACTATATTGATTCGGAATAAAAA--C--TATGTGACATCAT-TT-GTCAGCTA-ACAATT-TTGTATGGAACACC-G-TAC-GTGTAGAAAATATGAATT----TCAG--TGTCATATTCTTC-ATTACCTGCTA-TTTGATTTATTACGTATTTT--TAAAAAGTTTAGACATA
gi|4 : -TTGTAGGCGCTCAGATTTCATAGCGTTGTAAGTTACCACTATAAAATTT-----ACAT-AAAAGATTCTC-----------GAATGACAGAACTTAATGTGAGTTT----------CATT-ATT-GCA----------TTCATAACTGGCTTGATTTTT-ATAAGA---TCA--AAC--AA-ACATATATAGTGTA----TATTTTGACGCTTATAGGTGTTAAATGG--CAGCATAATAAGAGGGTGTACCTGTTGTTACAGAAAAGTGGTCT-AA-TAATCGGTGATTTT-GACATCTa
gi|4 : CCGTGTCTAT----TTGCGTCTA-AGCCGTACAaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggtgtgatgaattgtattatacaattcagtgttgaaaaattgctttaaaacttactacgtgagagtaatatatattttgtaaaaatattcagcattgcatatgttcacgcatgagtttaaaaagaa
gi|4 : ttgtaggcgctcagatttcatagcgttgtaagttaccactataaaatttacataaaagattctcgaatgacagaacttaatgtgagtttcattattgcattcataactggcttgatttttataagatcaaacaaacatatatagtgtatattttgacgcttataggtgttaaatggcagcataataagagggtgtacctgttgttacagaaaagtggtctaataatcggtgattttgacatctaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgca-GTGATGAAT--TGTATT----ATACAATTCAGT-GTTGAAAAATTGCTTTAAA-ACTTACTACGTGAGAGTAA-TATATATTTTGT-AAAAATATTCAGCATTGCATATGTTCACGCATGAGTTTAAAAA-GAAgcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggtgtgatgaattgtattatacaattcagtgttgaaaaattgctttaaaacttactacgtgagagtaatatatattttgtaaaaatattcagcattgcatatgttcacgcatgagtttaaaaagaa
gi|5 : ttgtaggcgctcagatttcatagcgttgtaagttaccactataaaatttacataaaagattctcgaatgacagaacttaatgtgagtttcattattgcattcataactggcttgatttttataagatcaaacaaacatatatagtgtatattttgacgcttataggtgttaaatggcagcataataagagggtgtacctgttgttacagaaaagtggtctaataatcggtgattttgacatctaaaatagtgtgaacaatatattaaggaggacagatgcagtaggttttctgtagatatgagaatactctctcatttaaaaacacgccttattaaaaatttcaaatgtaattacatattttcgagaaagcatcggacactctcttttcttaacaataaaaggctttgcggctctctcgaaaccgtccatagcctgcaccgtgtctatttgcgtctaagccgtacagcgtgagaacgattaatagctagtagattgcaattgcaaaattatgctcactaacaagattgtgcgttggt--------GCTTGC-TTGTAGGCCCCC-----------------------------------TT-----C-AT-A---------------------GC-TGA---AATTTA-TATGAATT-----------TATT-ACT-ACA----------TTAATAA-TGTCTTCTTTTT--ATAAGA-TTTTG--AAA--AA-C------------A----TATTTTG-TGCTTGTT-GTG-TAAAGGGGTCA--AT--TAA----GT-CACCT-TTATAACAGAAAAGT-GTCT-AA-AAAT--GTGATTTT-GACATCTTT-AGTGGAC-ATTTT---AAACACTTTACTTGCGATTTCTTGA-TCAAGATCGATGTT--TATACACC-GTAAATATATCAATATCAA---A-TGTTA-CAATCTGC-AT-GC-AAA--ACATCTATCTTGT----TCAAAACGTTGCAAA--TATCTAACTGGTG--AAAAAAACTTTCGAAAAATGCA---CA---TTT---TCCTCCAAAACTTTCGCATTGACGTCATACCTTTGTG--TAG----TTG----TA-TGGCGTACATTGG---ATGTT-A---AGATGAATG--CATG-GTGATCAATGTTACGTTGGATATATAGTTT-GT-CATGAAAA--TACCTTAAA-AC-CACTA--------TGATTATAT--TTTGT-A-------TT-ACAT----TATGTCCACA-AT--GGTTTGAAATGAAGAAATCTGTAG-ACACGA-
gi|6 : GTGT------AAAGG------ACTATATAGGGTATCATATGCTGCTTGC-TTGTAGGCCC------TTCATCCT--CG-A---T-------TAAAAGTTGGTGAA-AT-AAA-------------------GA-TGA---AATT----ATGAGTT-----------TATC-GTT-GCA----------TTTCTAAATGTCTTATTTTTC-ATAAGA-TTTTG--AAA--AA-A------------A----CAATA-G-TGCTTGTA-GTG-TAACGGGGTCA---T--TAA----GT-CACCT-TGGTTACAGAGAAGT-GTCT-AA-ATAC--G-AATTTT-GACA-CCTTTAGTGGAC-A-TTT---AAA
gi|7 : gattatataaaaagggaattagaattaatttacatcacttatatcataaaaaaactcagtgaatacaaggtagaacttattcagatctaaaaataatggtgaaaattttgttctatgttcggtcccaaatagtcccacttaacaaagaatgaatgcgtaacattctactcctaattttaatcttacatctaactctaattttacatgttactttaaaattatacttaaaaaaaggtttaactttacacatcacgatcttaaa------------A----TATATTG-TGCTTGTA-GTG-TGAATAGGTTA--TT--TGG----TT-CACCT-TGGTTACAGAAAAAT-GTGT-AA-AGTC--ATACTATT-GACATCTTTAAG--AACGATTTT---ATGTACTT-----GCGATTTCTTGA-TCAAGATCAATATT--CACACACC-ATAAA------AAT--------------------CTGC-AT-GA-AAAGAATATTTATCTTGT----TCAAAACGTCACAGA--TA----ATCGGTG--AAAAAAGCCTTCGAAAGATATG---AA---CTT---TCTTCCATAACTTACATATCGACGTCATACTTCCGTGTACATGTAGTTG----TA-TACCGTACATTG---TACGTC-A---TGATGAGTG--CATG-GTTATCAATGTTGTATTG
gi|8 : tttaaactttaatgTGT------AAAGA------ACTATATAGGGTAA--------GCTTGC-TTGTAGGCCCCC----TTCGTAGC--TT-AATTT-------TAAACCTT-----A-AT-AAAAG----TT-----------GA-TGA---GATTTA-TGTGAGTTCATTATAAAGACATT-ATT-ACATTATTAATATTTCATAA-TGTCTTATTTTT--ATAAGA-TTTTG--AAAATAA-A------------A----TA-TTTG-CGCTTGTA-GTG-CAGGTGACTTA--AT--AAA----TT-CACCT-TGG-AACAGAAAAGT-GTCT-AA-AAAC--GTAATTTT-GATATCTTTT-GTGGAC-ATTT
gi|9 : aagcttcatcctttcgtaattctatacatgatgtttaaaatatataactaaatttaccaaaatTGTATATACTAGCC-------TACAACTGCAAAAATACA---TGTTGTACTCGCTAAATTCGGGGTAAA-TAACCT---T-TTTAAGAAGTTCTCTAAAAGTATATCATT-GTAACAATAGGCTATATGTGTGCATAAAATTTACAATTGCACTAT-T-GATTCGGAAT-AAAAAAC--TATGTGACGCCAT-TT-GTTGGCTA-ACAGTT-TAGTATG-------------------GAAAATGCGAATT-------------------CTTC-ATTACCTGCTA-TTTGATTTATTAATTATTTT--TAAATAGCTTAGACATATTAAATAAG--AAAATTGTAGTTTAGATTACAGGAGCATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): GAGTTAATTGCGTACCTTGTTTACTACCTAAAAACTTCTAAAAATACCAATGTCAACATCTTTTTCATCAATTTTTGAGTTGC
Unaligned ( gi|22 ): TTTTGAGTTTTCATCAGCTTCTGTGAGATGCTTAGTTCTGAATAAACACGTTGTCGTTGAACTACATGTT