lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111111111111111111111111111111111111111111111111 11111111111111111
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 2 11111111111111111111111111111111111111111111111111111 00000000000000000 11111 2222 111111 1111 1
lowQualScore : 6 6 6 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 6 0 2 77777777777777777777777777777777777777777777777777777 8 7 55 00000000000000000 2 55555 777 3 4444 4 444444 999 0000 444 2 44 3 3 3
lowQualScore : . . . ....................................................................................................................... . . . . ..................................................... . . .. ................. . ..... ... . .... . ...... ... .... ... . .. . . .
lowQualScore : 0 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 5 88888888888888888888888888888888888888888888888888888 0 3 00 00000000000000000 5 88888 888 9 6666 4 222222 111 8888 777 9 22 2 1 1
consensus : NNNGATAGAGAATTTAT--AAATCCA-----CTCTAACCTCTTCTTAAAGCGGATCGCACGGCAAGTTGCGGTCGAACTTGCTCTGACAAAACGCTCTAATTTTAATGAGAGAAC-----ATCA--TCTGCTGG--CTGGCTCTGTGACATGCCNCAAGTATNACGAAATTGGAACCAGCTCTGC-GACTGC---GA-TTGAC-TCGGAACA-G-CTCTGC-TGACTGCTCT--AGAA-----C-G-------TTAGAACTGTTCTACGAC--TGNTCTGGAA---TAGAATC---CTGAC-TGTTCT--GGGTC-GGAATCCTGACTG----CTCTAGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATT
Reference ( gi|1 ) : GTTGACAAAGAATCTATTCAGATGCGACAATCTCTAAACTCT-CTTAAAGCAG-CCGTAGAGCA-GTT-----CTAA--TG-TCTG--------CTCTAAGTTTATTTAGAGCAGTTTTAATTACTTCTA-TAGAACTG-CTCTACGAC-TGCTCCAAGT-TCAC----TCAGAAC-AGCTCTAC-GACTGCTCAGAGTTCAC-TTAGAACA-G-CTCTGC-TGACTGCTCT--AGAA-----CTG--CT---TTAGAACTGTTCTATGAC--TGCTCTGGAA---TAAAATA---CTGAC-TGTTCC--GTGTC-AAAATCCTGACTG----CTCTAGAAAAGAGC---TG-TTCT--ATATTAGA-A-TCATTTTA
gi|2 : GATAGAGAATTTAT--AAATCCA-----CTCTAACCTCTTCTTAAAGCGGATCGCACGGCAAGTTGCGGTCGAACTTGCTCTGACAAAACGCTCTAATTTTAATGAGAGAAC-----ATCA--TCTGCTGG--CTGGCTCTATGACATGCCCCAAGTATCAAAAAAT-AGAACCAGCTCT---GAC-G---AGACTTGAC-TC----CAAG-TTCCACGCGATTGCT-T--AGAA--------------------ACTATTCTACGAC--GGATCTGGAA---TAGAGTC---CTGAC-TGTT----GTG---------CT--CTG--------AAAAAAGAGT---TC-TTTTTGATATTAGATA-TCATT
gi|4 : ttgTG-CTCTGTGAC-TGCTATAAGT-TGACG---TTGAAAC--GCTCTGCTGACTGC------TTC----TAGAAC--G-TTCTAC--GA-TG-TCTGAAAAA---------------TTAGAATGAATC--TGAC--TGTTCTGgcat
gi|4 : cgctcgagaGCTCTGT-GACTGCTATAAGTTGACGTTGAAAC--G-CTCTGC-TGACTGCT-------------------T---CTAGAAC-GTTCTACGA---TG-TCTGAAAAATTAGAATGAATCTGAC-TGTTCT--G
gi|3 : cgctcgagatGAGCA-GTCTCTGCGTGACTGCTCT--A---------------------GAACTGTTCTACG-C----CTCT-GAA---TAGAAT-----TTAC-TGTTCT--GGATCTTGAATCGTGA-TG----CTC-AAAAAAGAGC---T--TTCT--AGA-TAGA-ACTCAT
gi|6 : agCA-G-CTCTGC-TGATTGCTCT--AGAA-----CTG-------TTAGA------CTATGGC--TGA-CTGGAA---TAGAATC---TTGAT-TGTTCT--GGGTC-ATAATCCTGACTG----CTCTAGAAAAGAGC---TG-gtatg
gi|7 : C-TGACTGCTCT--AGAA-----A-----------AGAACTGTTCTA
gi|15 : gaataaatcctaaatgcttcttgggtcacaatcC-TGACTGCTCT--AGAA-----A-----------AGAGCTGTTCTAgtttagaatcattgcatg
gi|16 : cagaatcC-TAACTGCTCT--AGAAAAGAGCTG--CT---TTAGAgattatatcattgca
gi|11 : aatcC-TGACTGCTCT--AGAAAAGAGCTGTACTAGATTAGAATCGTTGCATGAttagaatcattgcat
gi|12 : tcggaattC-TGACTGCTCT--AGAAAGAG-CTGTACTAGATTAGAATCGTTGCATGA
gi|8 : tcggaatc-TGACTGCTCT--AGAA-----A-----------AGAGCTGTTCTA
gi|5 : agtagaatcctaactgttttgggtcaaaatcaGAACTGTTCTACGACGATGCTCTGGAA---T-AGATC---CTGACTTGTTCT--GGGAT-GAAATACTGACTGCA--CTCTAG-AAAGAACTTTTGTTTCT--AGATTAGA-A-TGATTgattagaatcattgca
gi|7 : GAA---TAAA-TC---CTAAA-TGCTTCTTGGGTC-ACAATCCTGACTG----CTCTAGAAAAGAAC---TG-TTCT--AGTTTAGA-A-TCATTggca
gi|8 : AG---TAGAATC---CTAAC-TGTTTT--GGGTC-AAAATCATGACTG----CTCTAGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATTgcatg
gi|13 : AA---TAGAATC---CTGAT-TGTTCT--GGGTC-AGAATCCTGACTG----CTCTAGAAGAGAGC---Tgca
gi|9 : AA---TATAATC---CTGAC-TGATTT--GGATC-ATAATCCTAACTA----CTCTACAAA-GAGC---TG-TTCT--AGATTAGA-A-CCATT
gi|11 : TC-GGAATTCTGACTG----CTCTAGAAAAGAGC---TG-TACT--AGATTAGA-A-TCGTTgca
gi|12 : TC-GGAATCCTGACTG----CTCTAG-AAAGAGC---TG-TACT--AGATTAGA-A-TCGTTgcatga
gi|15 : C-AGAATCCTGACTG----CTCTAGAAAAGAGC---TG-TTCT--AGATTAT--A-TCATTgcatga
gi|10 : -AGAATCCTGACTGTTTGCTCTAGAAAAGAGC---TG-TTCA--AGATTGGA-A-TAATTgca
gi|16 : AATCCTAACTG----CTCTAGAAAAGAGC---TG-CTTT--AGATTAGA-A-TCATTgcatga
gi|17 : AGAAAAGAAT---TG-TTCT--AGATTAGA-A-TCATTgcat
gi|18 : GGAAAGAGC---TG-TTCT--CGATTAGA-A-TCATTgcatgat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): GAACTGTCTACGGATCAGAATAGATCCTTACCTTTGTTCTGGGCTGAAACTGA
Alignments
lowQualScore : 22 55555 1 1 1 22222 11 1 33333333 555555 22 1 22 1 1 1 55555555 1 1 666666666666666 1 1 6666666666 1111111 111 1111
lowQualScore : 77 2 00000 2 5 5 2 5 55555 2 88 5 55555555 3 4 2 3 222222 77 5 77 5 6 5 1 5 1 44444444 5 3 111111111111111 3 777 0 88 8 6 8 4444444444 1 1 9999999 666 666 000 3 3 777 0000 2 444 2 33 2 2
lowQualScore : .. . ..... . . . . . ..... . .. . ........ . . . . ...... .. . .. . . . . . . ........ . . ............... . ... . .. . . . .......... . . ....... ... ... ... . . ... .... . ... . .. . .
lowQualScore : 55 5 00000 5 5 5 5 5 55555 5 00 0 00000000 0 0 5 0 555555 55 0 55 0 0 5 0 5 0 55555555 0 3 000000000000000 3 444 8 88 0 0 0 5555555555 4 4 1111111 444 444 000 6 6 333 0000 7 444 7 99 9 9
consensus : NNNGACAGAGAATCTATTCAGATNCGACAATCTCTAANCTCTTCTTAAAGCGGACCGCACGGCAAGTTGCGGTCNAACTTGCTCTGACAAAACGCTCTAANTTTANTNAGAGNANTTTTAATCACTTCTGCTGGAACTGGCTCTACGACATGCCCCAAGTATCANAAAATCAGAACCAGCTCTG-CGACTGC---GA-T----TGAC-TCGGAAC-AG-CTCTGCGTGACTGC-TCTAGAACTG--TTAGAACTGTTCTACGAC--TGATCTGGAA---TAGAAT---CCTGAC---TG-TTCT-GGGTC-GGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATT
Reference ( family-2550 ) : NNNGATAGAGAATTTAT--AAATCCA-----CTCTAACCTCTTCTTAAAGCGGATCGCACGGCAAGTTGCGGTCGAACTTGCTCTGACAAAACGCTCTAATTTTAATGAGAGAAC-----ATCA--TCTGCTGG--CTGGCTCTGTGACATGCCNCAAGTATNACGAAATTGGAACCAGCTCTG-CGACTGC---GA-T----TGAC-TCGGAAC-AG-CTCTGC-TGACTGC-TCTAGAAC-G--TTAGAACTGTTCTACGAC--TGNTCTGGAA---TAGAAT---CCTGAC---TG-TTCT-GGGTC-GGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATT
gi|1 : GACAAAGAATCTATTCAGATGCGACAATCTCTAAACTCT-CTTAAAGCAG-CCGTAGAGCA-GTT-----CTAA--TG-TCTG--------CTCTAAGTTTATTTAGAGCAGTTTTAATTACTTCTA-TAGAACTG-CTCTACGAC-TGCTCCAAGT-TCAC----TCAGAAC-AGCTCTA-CGACTGCTCAGAGT----TCAC-TTAGAAC-AG-CTCTGC-TGACTGC-TCTAGAACTGCTTTAGAACTGTTCTATGAC--TGCTCTGGAA---TAAAAT---ACTGAC---TG-TTCC-GTGTC-AAAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--ATATTAGA-A-TCATT
gi|10 : gttGAATCCTGACTGTTTGCTCT-AGAAAAGAGC---TG-TTCA--AGATTGGA-A-TAATTtta
gi|11 : aTC-GGAATTCTGACTG----CTCT-AGAAAAGAGC---TG-TACT--AGATTAGA-A-TCGTTgcatga
gi|12 : TC-GGAATCCTGACTG----CTCT-AG-AAAGAGC---TG-TACT--AGATTAGA-A-TCGTTgcatga
gi|13 : AA---TAGAAT---CCTGAT---TG-TTCT-GGGTC-AGAATCCTGACTG----CTCT-AGAAGAGAGC---Tgcatga
gi|14 : GAACTGT-CTACG-----GATC-AGAA---TAGA-T---CCTTACCTTTG-TTCT-GGGCT-GAAA--CTGA
gi|15 : C-AGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAT--A-TCATT
gi|16 : AATCCTAACTG----CTCT-AGAAAAGAGC---TG-CTTT--AGATTAGA-A-TCATTgca
gi|17 : -AGAAAAGAAT---TG-TTCT--AGATTAGA-A-TCATTgcat
gi|18 : GGAAAGAGC---TG-TTCT--CGATTAGA-A-TCATTgcatgat
gi|2 : GATAGAGAATTTAT--AAATCCA-----CTCTAACCTCTTCTTAAAGCGGATCGCACGGCAAGTTGCGGTCGAACTTGCTCTGACAAAACGCTCTAATTTTAATGAGAGAAC-----ATCA--TCTGCTGG--CTGGCTCTATGACATGCCCCAAGTATCAAAAAA-TAGAACCAGCTCTGACGA-------GACT----TGAC-TC----CAAG-TTCCACGCGATTGC-T-TAGA----------AACTATTCTACGAC--GGATCTGGAA---TAGAGT---CCTGAC---TG-T--T-G----------------TG----CTCTGAAAAAAGAGT---TC-TTTTTGATATTAGATA-TCATTgcatgat
gi|3 : ttgGGAGC-AGTCTCTGCGTGACTGC-TCTAGA-----------ACTGTTCTACGCC-----TCT-GAA---TAGAAT-----TTAC---TG-TTCT-GGATCTTGAATCGTGA-TG----CTC--AAAAAAGAGC---T--TTCT--AGA-TAGA-ACTCATgcat
gi|4 : aGCTCTG-TGACTGC---TA-TAAGTTGACGTTGAAAC--G-CTCTGC-TGACTGCTTCTAGAAC------------GTTCTACGA---TG-TCTGAAAAATTAGAATGAATCTGAC---TG-TTCT-Ggtatg
gi|5 : cgctcgagatGAACTGTTCTACGACGATGCTCTGGAA---TAG-AT---CCTGACT--TG-TTCT-GGGAT-GAAATACTGACTGCA--CTCT-AG-AAAGAACTTTTGTTTCT--AGATTAGA-A-TGATT
gi|6 : C-AG-CTCTGC-TGATTGC-TCTAGAACTG--TTAGA------CTATGGC--TGA-CTGGAA---TAGAAT---CTTGAT---TG-TTCT-GGGTC-ATAATCCTGACTG----CTCT-AGAAAAGAGC---TG-ggca
gi|7 : GAA---TA-AAT---CCTAAA---TGCTTCTTGGGTC-ACAATCCTGACTG----CTCT-AGAAAAGAAC---TG-TTCT--AGTTTAGA-A-TCATT
gi|8 : AG---TAGAAT---CCTAAC---TG-TTTT-GGGTC-AAAATCATGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATTgcatg
gi|9 : AA---TATAAT---CCTGAC---TG-ATTT-GGATC-ATAATCCTAACTA----CTCT-A-CAAAGAGC---TG-TTCT--AGATTAGA-A-CCATTgca
Alignments
lowQualScore : 11 22222 1 1 1 22222 11 1 33333333 222222 11 1 11 1 1 1 3333333 1 1 666666666666666 1 2 333333333 1111111 111 1111
lowQualScore : 88 1 77777 1 5 5 2 5 55555 1 88 5 55555555 1 1 1 1 888888 88 5 88 5 5 5 1111111 5 3 111111111111111 3 777 0 88 8 0 888 888888888 1 1 8888888 666 666 000 3 3 777 0000 2 444 2 33 2 2
lowQualScore : .. . ..... . . . . . ..... . .. . ........ . . . . ...... .. . .. . . . ....... . . ............... . ... . .. . . ... ......... . . ....... ... ... ... . . ... .... . ... . .. . .
lowQualScore : 00 0 00000 0 5 5 5 5 55555 0 00 0 00000000 0 0 0 0 555555 00 0 55 0 5 5 5555555 0 3 000000000000000 3 444 8 88 0 0 888 666666666 4 4 9999999 444 444 000 6 6 333 0000 7 444 7 99 9 9
consensus : NNNGACAGAGAATCTATTCAGATNCGACAATCTCTAANCTCTTCTTAAAGCGGACCGCACGGCAAGTTGCGGTCNAACTTGCTCTGACAAAACGCTCTAANTTTANTNAGAGNANTTTTAATCACTTCTGCTGGAACTGGCTCTACGACATGCCCCAAGTATCANAAAATCAGAACCAGCTCTG-CGACTGC---GA-T----TGAC-TCGGAAC-AG-CTCTGCGTGACTGCT-CTAGAACTG--TTAGAACTGTTCTACGAC--TGATCTGGAA---TAGAAT---CCTGAC---TG-TTCT-GGGTC-GGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATT
Reference ( family-2550 ) : NNNGACAGAGAATCTATTCAGATNCGACAATCTCTAANCTCTTCTTAAAGCGGACCGCACGGCAAGTTGCGGTCNAACTTGCTCTGACAAAACGCTCTAANTTTANTNAGAGNANTTTTAATCACTTCTGCTGGAACTGGCTCTACGACATGCCCCAAGTATCANAAAATCAGAACCAGCTCTG-CGACTGC---GA-T----TGAC-TCGGAAC-AG-CTCTGCGTGACTGCT-CTAGAACTG--TTAGAACTGTTCTACGAC--TGATCTGGAA---TAGAAT---CCTGAC---TG-TTCT-GGGTC-GGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATT
gi|1 : GACAAAGAATCTATTCAGATGCGACAATCTCTAAACTCT-CTTAAAGCAG-CCGTAGAGCA-GTT-----CTAA--TG-TCTG--------CTCTAAGTTTATTTAGAGCAGTTTTAATTACTTCTA-TAGAACTG-CTCTACGAC-TGCTCCAAGT-TCAC----TCAGAAC-AGCTCTA-CGACTGCTCAGAGT----TCAC-TTAGAAC-AG-CTCTGC-TGACTGCT-CTAGAACTGCTTTAGAACTGTTCTATGAC--TGCTCTGGAA---TAAAAT---ACTGAC---TG-TTCC-GTGTC-AAAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--ATATTAGA-A-TCATT
gi|10 : gttGAATCCTGACTGTTTGCTCT-AGAAAAGAGC---TG-TTCA--AGATTGGA-A-TAATTtta
gi|11 : aTC-GGAATTCTGACTG----CTCT-AGAAAAGAGC---TG-TACT--AGATTAGA-A-TCGTTgcatga
gi|12 : TC-GGAATCCTGACTG----CTCT-AG-AAAGAGC---TG-TACT--AGATTAGA-A-TCGTTgcatga
gi|13 : AA---TAGAAT---CCTGAT---TG-TTCT-GGGTC-AGAATCCTGACTG----CTCT-AGAAGAGAGC---Tgcatga
gi|14 : GAACTGT-CTACG-----GATC-AGAA---TAGA-T---CCTTACCTTTG-TTCT-GGGCT-GAAA--CTGA
gi|15 : C-AGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAT--A-TCATT
gi|16 : AATCCTAACTG----CTCT-AGAAAAGAGC---TG-CTTT--AGATTAGA-A-TCATTgca
gi|17 : -AGAAAAGAAT---TG-TTCT--AGATTAGA-A-TCATTgcat
gi|18 : GGAAAGAGC---TG-TTCT--CGATTAGA-A-TCATTgcatgat
gi|2 : GATAGAGAATTTAT--AAATCCA-----CTCTAACCTCTTCTTAAAGCGGATCGCACGGCAAGTTGCGGTCGAACTTGCTCTGACAAAACGCTCTAATTTTAATGAGAGAAC-----ATCA--TCTGCTGG--CTGGCTCTATGACATGCCCCAAGTATCAAAAAAT-AGAACCAGCTCTGACGA-------GACT----TGAC-TC----CAAG-TTCCACGCGATTGCT--TAGA----------AACTATTCTACGAC--GGATCTGGAA---TAGAGT---CCTGAC---TG-T--T-G----------------TG----CTCTGAAAAAAGAGT---TC-TTTTTGATATTAGATA-TCATTgcatgat
gi|3 : ttgGGAGC-AGTCTCTGCGTGACTGCT-C-----------TAGAACTGTTCTACGCC-----TCT-GAA---TAGAAT-----TTAC---TG-TTCT-GGATCTTGAATCGTGA-TG----CTC--AAAAAAGAGC---T--TTCT--AGA-TAGA-ACTCATgcat
gi|4 : aGCTCTG-TGACTGC---TA-TAAGTTGACGTTGAAAC--G-CTCTGC-TGACTGCTTCTAGAAC------------GTTCTACGA---TG-TCTGAAAAATTAGAATGAATCTGAC---TG-TTCT-Ggtatg
gi|5 : cgctcgagatGAACTGTTCTACGACGATGCTCTGGAA---TAG-AT---CCTGACT--TG-TTCT-GGGAT-GAAATACTGACTGCA--CTCT-AG-AAAGAACTTTTGTTTCT--AGATTAGA-A-TGATT
gi|6 : C-AG-CTCTGC-TGATTGCT-CTAGAACTG--TTAGA------CTATGGC--TGA-CTGGAA---TAGAAT---CTTGAT---TG-TTCT-GGGTC-ATAATCCTGACTG----CTCT-AGAAAAGAGC---TG-ggca
gi|7 : GAA---TA-AAT---CCTAAA---TGCTTCTTGGGTC-ACAATCCTGACTG----CTCT-AGAAAAGAAC---TG-TTCT--AGTTTAGA-A-TCATT
gi|8 : AG---TAGAAT---CCTAAC---TG-TTTT-GGGTC-AAAATCATGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATTgcatg
gi|9 : AA---TATAAT---CCTGAC---TG-ATTT-GGATC-ATAATCCTAACTA----CTCT-A-CAAAGAGC---TG-TTCT--AGATTAGA-A-CCATTgca
Alignments
lowQualScore : 11 22222 1 1 1 22222 11 1 33333333 222222 11 1 11 1 1 1 3333333 1 1 666666666666666 1 2 333333333 1111111 111 1111
lowQualScore : 88 1 77777 1 5 5 2 5 55555 1 88 5 55555555 1 1 1 1 888888 88 5 88 5 5 5 1111111 5 3 111111111111111 3 777 0 88 8 0 888 888888888 1 1 8888888 666 666 000 3 3 777 0000 2 444 2 33 2 2
lowQualScore : .. . ..... . . . . . ..... . .. . ........ . . . . ...... .. . .. . . . ....... . . ............... . ... . .. . . ... ......... . . ....... ... ... ... . . ... .... . ... . .. . .
lowQualScore : 00 0 00000 0 5 5 5 5 55555 0 00 0 00000000 0 0 0 0 555555 00 0 55 0 5 5 5555555 0 3 000000000000000 3 444 8 88 0 0 888 666666666 4 4 9999999 444 444 000 6 6 333 0000 7 444 7 99 9 9
consensus : NNNGACAGAGAATCTATTCAGATNCGACAATCTCTAANCTCTTCTTAAAGCGGACCGCACGGCAAGTTGCGGTCNAACTTGCTCTGACAAAACGCTCTAANTTTANTNAGAGNANTTTTAATCACTTCTGCTGGAACTGGCTCTACGACATGCCCCAAGTATCANAAAATCAGAACCAGCTCTG-CGACTGC---GA-T----TGAC-TCGGAAC-AG-CTCTGCGTGACTGCT-CTAGAACTG--TTAGAACTGTTCTACGAC--TGATCTGGAA---TAGAAT---CCTGAC---TG-TTCT-GGGTC-GGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATT
Reference ( family-2550 ) : NNNGACAGAGAATCTATTCAGATNCGACAATCTCTAANCTCTTCTTAAAGCGGACCGCACGGCAAGTTGCGGTCNAACTTGCTCTGACAAAACGCTCTAANTTTANTNAGAGNANTTTTAATCACTTCTGCTGGAACTGGCTCTACGACATGCCCCAAGTATCANAAAATCAGAACCAGCTCTG-CGACTGC---GA-T----TGAC-TCGGAAC-AG-CTCTGCGTGACTGCT-CTAGAACTG--TTAGAACTGTTCTACGAC--TGATCTGGAA---TAGAAT---CCTGAC---TG-TTCT-GGGTC-GGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATT
gi|1 : GACAAAGAATCTATTCAGATGCGACAATCTCTAAACTCT-CTTAAAGCAG-CCGTAGAGCA-GTT-----CTAA--TG-TCTG--------CTCTAAGTTTATTTAGAGCAGTTTTAATTACTTCTA-TAGAACTG-CTCTACGAC-TGCTCCAAGT-TCAC----TCAGAAC-AGCTCTA-CGACTGCTCAGAGT----TCAC-TTAGAAC-AG-CTCTGC-TGACTGCT-CTAGAACTGCTTTAGAACTGTTCTATGAC--TGCTCTGGAA---TAAAAT---ACTGAC---TG-TTCC-GTGTC-AAAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--ATATTAGA-A-TCATT
gi|10 : gttGAATCCTGACTGTTTGCTCT-AGAAAAGAGC---TG-TTCA--AGATTGGA-A-TAATTtta
gi|11 : aTC-GGAATTCTGACTG----CTCT-AGAAAAGAGC---TG-TACT--AGATTAGA-A-TCGTTgcatga
gi|12 : TC-GGAATCCTGACTG----CTCT-AG-AAAGAGC---TG-TACT--AGATTAGA-A-TCGTTgcatga
gi|13 : AA---TAGAAT---CCTGAT---TG-TTCT-GGGTC-AGAATCCTGACTG----CTCT-AGAAGAGAGC---Tgcatga
gi|14 : GAACTGT-CTACG-----GATC-AGAA---TAGA-T---CCTTACCTTTG-TTCT-GGGCT-GAAA--CTGA
gi|15 : C-AGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAT--A-TCATT
gi|16 : AATCCTAACTG----CTCT-AGAAAAGAGC---TG-CTTT--AGATTAGA-A-TCATTgca
gi|17 : -AGAAAAGAAT---TG-TTCT--AGATTAGA-A-TCATTgcat
gi|18 : GGAAAGAGC---TG-TTCT--CGATTAGA-A-TCATTgcatgat
gi|2 : GATAGAGAATTTAT--AAATCCA-----CTCTAACCTCTTCTTAAAGCGGATCGCACGGCAAGTTGCGGTCGAACTTGCTCTGACAAAACGCTCTAATTTTAATGAGAGAAC-----ATCA--TCTGCTGG--CTGGCTCTATGACATGCCCCAAGTATCAAAAAAT-AGAACCAGCTCTGACGA-------GACT----TGAC-TC----CAAG-TTCCACGCGATTGCT--TAGA----------AACTATTCTACGAC--GGATCTGGAA---TAGAGT---CCTGAC---TG-T--T-G----------------TG----CTCTGAAAAAAGAGT---TC-TTTTTGATATTAGATA-TCATTgcatgat
gi|3 : ttgGGAGC-AGTCTCTGCGTGACTGCT-C-----------TAGAACTGTTCTACGCC-----TCT-GAA---TAGAAT-----TTAC---TG-TTCT-GGATCTTGAATCGTGA-TG----CTC--AAAAAAGAGC---T--TTCT--AGA-TAGA-ACTCATgcat
gi|4 : aGCTCTG-TGACTGC---TA-TAAGTTGACGTTGAAAC--G-CTCTGC-TGACTGCTTCTAGAAC------------GTTCTACGA---TG-TCTGAAAAATTAGAATGAATCTGAC---TG-TTCT-Ggtatg
gi|5 : cgctcgagatGAACTGTTCTACGACGATGCTCTGGAA---TAG-AT---CCTGACT--TG-TTCT-GGGAT-GAAATACTGACTGCA--CTCT-AG-AAAGAACTTTTGTTTCT--AGATTAGA-A-TGATT
gi|6 : C-AG-CTCTGC-TGATTGCT-CTAGAACTG--TTAGA------CTATGGC--TGA-CTGGAA---TAGAAT---CTTGAT---TG-TTCT-GGGTC-ATAATCCTGACTG----CTCT-AGAAAAGAGC---TG-ggca
gi|7 : GAA---TA-AAT---CCTAAA---TGCTTCTTGGGTC-ACAATCCTGACTG----CTCT-AGAAAAGAAC---TG-TTCT--AGTTTAGA-A-TCATT
gi|8 : AG---TAGAAT---CCTAAC---TG-TTTT-GGGTC-AAAATCATGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATTgcatg
gi|9 : AA---TATAAT---CCTGAC---TG-ATTT-GGATC-ATAATCCTAACTA----CTCT-A-CAAAGAGC---TG-TTCT--AGATTAGA-A-CCATTgca
blockSeqs : . C . C T A C A GCGGT G CT C ACAAAACG T A G A C . C . G A A AAAAAT C A CTGCTATAAGT G TGA AA T G TCT ACTGTTA A T ACGATGC AAT GAA CTT C T TTG TTTG G TTT T TG T C
blockSeqs : . GACT . C A . G CT TA A T ACGGA . . T . . GG CA . . . . . .
blockSeqs : A . . T AC A T GCTGA . . . . . GG . . . . . . .
blockSeqs : . . . C . A T ATG . . . . . AG . . . . . . .
blockSeqs : . . GA . . . . . GA . . . . . . .
blockSeqs : . . CC . . . . . AG . . . . . . .
blockSeqs : . . . . . GA . . . . . . .
blockSeqs : . . . . . AT . . . . . . .
blockSeqs : . . . . . AC . . . . . . .
blockSeqs : . . . . . AA . . . . . . .
blockSeqs : AT . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons : CT* ********* ACGGA**
originalCons : NNNGACAGAGAATCTATTCAGATNCGACAATCTCTAANCTCTTCTTAAAGCGGACCGCACGGCAAGTTGCGGTCNAACTTGCTCTGACAAAACGCTCTAANTTTANTNAGAGNANTTTTAATCACTTCTGCTGGAACTGGCTCTACGACATGCCCCAAGTATCANAAAATCAGAACCAGCTCTG-CGACTGC---GA-T----TGAC-TCGGAAC-AG-CTCTGCGTGACTGCT-CTAGAACTG--TTAGAACTGTTCTACGAC--TGATCTGGAA---TAGAAT---CCTGAC---TG-TTCT-GGGTC-GGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATT
finalCons : NNNGACAGAGAATCTATTCAGATNCGACAATCTCTAANCTCTTCTTAAAGCGGACCGCACGGCAAGTTGCGGTCNAACTTGCTCTGACAAAACGCTCTAANTTTANTNAGAGNANTTTTAATCACTTCTGCTGGAACTGGCTCTACGACATGCCCCAAGTATCANAAAATCAGAACCAGCTCTG-CGACTGC---GA-T----TGAC-TCGGAAC-AG-CTCTGCGTGACTGCTCT-AGA---------GAACTGTTCTACGACGGA--TCTGGAA---TAGAAT---CCTGAC---TG-TTCT-GGGTC-GGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATT
Alignments
lowQualScore : 11 22222 1 1 1 22222 11 1 33333333 222222 11 1 11 1 1 1 3333333 1 1 666666666666666 1 2 3333333333 111 22222 111 1111
lowQualScore : 88 1 77777 1 5 5 2 5 55555 1 88 5 55555555 1 1 1 1 888888 88 5 88 5 5 5 1111111 5 3 111111111111111 3 777 0 88 8 0 8 0 4444444444 000 3 11111 666 666 000 3 3 777 0000 2 444 2 33 2 2
lowQualScore : .. . ..... . . . . . ..... . .. . ........ . . . . ...... .. . .. . . . ....... . . ............... . ... . .. . . . . .......... ... . ..... ... ... ... . . ... .... . ... . .. . .
lowQualScore : 00 0 00000 0 5 5 5 5 55555 0 00 0 00000000 0 0 0 0 555555 00 0 55 0 5 5 5555555 0 3 000000000000000 3 444 8 88 0 0 0 8 3333333333 000 6 11111 444 444 000 6 6 333 0000 7 444 7 99 9 9
consensus : NNNGACAGAGAATCTATTCAGATNCGACAATCTCTAANCTCTTCTTAAAGCGGACCGCACGGCAAGTTGCGGTCNAACTTGCTCTGACAAAACGCTCTAANTTTANTNAGAGNANTTTTAATCACTTCTGCTGGAACTGGCTCTACGACATGCCCCAAGTATCANAAAATCAGAACCAGCTCTG-CGACTGC---GA-T----TGAC-TCGGAAC-AG-CTCTGCGTGACTGCT-CTAGA---------GAACTGTT---CTACGACG--GATCTGGAA---TAGAAT---CCTGAC---TG-TTCT-GGGTC-GGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATT
Reference ( family-2550 ) : NNNGACAGAGAATCTATTCAGATNCGACAATCTCTAANCTCTTCTTAAAGCGGACCGCACGGCAAGTTGCGGTCNAACTTGCTCTGACAAAACGCTCTAANTTTANTNAGAGNANTTTTAATCACTTCTGCTGGAACTGGCTCTACGACATGCCCCAAGTATCANAAAATCAGAACCAGCTCTG-CGACTGC---GA-T----TGAC-TCGGAAC-AG-CTCTGCGTGACTGCT-CTAGA---------GAACTGTT---CTACGACG--GATCTGGAA---TAGAAT---CCTGAC---TG-TTCT-GGGTC-GGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATT
gi|1 : GACAAAGAATCTATTCAGATGCGACAATCTCTAAACTCT-CTTAAAGCAG-CCGTAGAGCA-GTT-----CTAA--TG-TCTG--------CTCTAAGTTTATTTAGAGCAGTTTTAATTACTTCTA-TAGAACTG-CTCTACGAC-TGCTCCAAGT-TCAC----TCAGAAC-AGCTCTA-CGACTGCTCAGAGT----TCAC-TTAGAAC-AG-CTCTGC-TGACTGCT-CTAGAACTGCTTTAGAACTGTT---CTATGACT--GCTCTGGAA---TAAAAT---ACTGAC---TG-TTCC-GTGTC-AAAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--ATATTAGA-A-TCATT
gi|10 : gttGAATCCTGACTGTTTGCTCT-AGAAAAGAGC---TG-TTCA--AGATTGGA-A-TAATTtta
gi|11 : aTC-GGAATTCTGACTG----CTCT-AGAAAAGAGC---TG-TACT--AGATTAGA-A-TCGTTgcatga
gi|12 : TC-GGAATCCTGACTG----CTCT-AG-AAAGAGC---TG-TACT--AGATTAGA-A-TCGTTgcatga
gi|13 : AA---TAGAAT---CCTGAT---TG-TTCT-GGGTC-AGAATCCTGACTG----CTCT-AGAAGAGAGC---Tgcatga
gi|14 : ---------GAACTGT----CTACG-----GATC-AGAA---TAGA-T---CCTTACCTTTG-TTCT-GGGCT-GAAA--CTGA
gi|15 : C-AGAATCCTGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAT--A-TCATT
gi|16 : AATCCTAACTG----CTCT-AGAAAAGAGC---TG-CTTT--AGATTAGA-A-TCATTgca
gi|17 : -AGAAAAGAAT---TG-TTCT--AGATTAGA-A-TCATTgcat
gi|18 : GGAAAGAGC---TG-TTCT--CGATTAGA-A-TCATTgcatgat
gi|2 : GATAGAGAATTTAT--AAATCCA-----CTCTAACCTCTTCTTAAAGCGGATCGCACGGCAAGTTGCGGTCGAACTTGCTCTGACAAAACGCTCTAATTTTAATGAGAGAAC-----ATCA--TCTGCTGG--CTGGCTCTATGACATGCCCCAAGTATCAAAAAAT-AGAACCAGCTCTGACGA-------GACT----TGAC-TC----CAAG-TTCCACGCGATTGCT--TAGA----------AACTATT---CTACGACG--GATCTGGAA---TAGAGT---CCTGAC---TG-T--T-G----------------TG----CTCTGAAAAAAGAGT---TC-TTTTTGATATTAGATA-TCATTgcatgat
gi|3 : ttgGGAGC-AGTCTCTGCGTGACTGCT-CT--A---------GAACTGTT---CTACGCC-----TCT-GAA---TAGAAT-----TTAC---TG-TTCT-GGATCTTGAATCGTGA-TG----CTC--AAAAAAGAGC---T--TTCT--AGA-TAGA-ACTCATgcat
gi|4 : aGCTCTG-TGACTGC---TA-TAAGTTGACGTTGAAAC--G-CTCTGC-TGACTGCTTCTAGA-----------AC-GTT---CTACGATG----TCTGAAAAATTAGAATGAATCTGAC---TG-TTCT-Ggtatg
gi|5 : cgctcgagat---------GAACTGTT---CTACGACGATGCTCTGGAA---TAG-AT---CCTGACT--TG-TTCT-GGGAT-GAAATACTGACTGCA--CTCT-AG-AAAGAACTTTTGTTTCT--AGATTAGA-A-TGATT
gi|6 : C-AG-CTCTGC-TGATTGCT-CTAGA-----------ACTGTTAGACTATGGCT--GA-CTGGAA---TAGAAT---CTTGAT---TG-TTCT-GGGTC-ATAATCCTGACTG----CTCT-AGAAAAGAGC---TG-ggca
gi|7 : GAA---TA-AAT---CCTAAA---TGCTTCTTGGGTC-ACAATCCTGACTG----CTCT-AGAAAAGAAC---TG-TTCT--AGTTTAGA-A-TCATT
gi|8 : AG---TAGAAT---CCTAAC---TG-TTTT-GGGTC-AAAATCATGACTG----CTCT-AGAAAAGAGC---TG-TTCT--AGATTAGA-A-TCATTgcatg
gi|9 : AA---TATAAT---CCTGAC---TG-ATTT-GGATC-ATAATCCTAACTA----CTCT-A-CAAAGAGC---TG-TTCT--AGATTAGA-A-CCATTgca