lowQualScore : 111111111111111111111111111
lowQualScore : 2 1 22222 1 3333 2222 11 1111 44444444444444444 11 111 8888888888888888888888888 22222 2 11 11 44444444444444444 11 777777 2222 11 11 1 333333333333333 3333333333333 111 1 5555555555555 11 000000000000000000000000000 22222222 111 33333333 111 1111 111111 1 1 111 1 11 11111 2222222222 222222222 22222 1 111 111111 11 11
lowQualScore : 1 3 2 3 5 0 0 55555 0 8 3 99 3 0 8 9 8 0 0 88 6 66 1111 4444 33 2 2 4444 33333333333333333 6 6 2 55 5 5 444 9999999999999999999999999 1 5 22222 77 0 6 7 88 6 6 6 99 6 33 66666666666666666 8 3 00 8 8 1 444444 9999 77 4 2 3 7777 33 99 0 0 8 0 000000000000000 6 5 6666666666666 111 6 6 3 5 6 0000000000000 11 666666666666666666666666666 3 00000000 111 00000000 3 555 777 3333 5 3 5 5 444444 5 9 6 6 66 000 1 5 77 22 0 88 5 88888 3333333333 5 55 999999999 5 5 5 55555 5 5 5 5 5 5 222 77 1 0 2 0 333333 0 5 66 88 5 77 5 77 5 3 5 888 4 4 0 44 5 5
lowQualScore : . . . . . . . ..... . . . .. . . . . . . . .. . .. .... .... .. . . .... ................. . . . .. . . ... ......................... . . ..... .. . . . .. . . . .. . .. ................. . . .. . . . ...... .... .. . . . .... .. .. . . . . ............... . . ............. ... . . . . . ............. .. ........................... . ........ ... ........ . ... ... .... . . . . ...... . . . . .. ... . . .. .. . .. . ..... .......... . .. ......... . . . ..... . . . . . . ... .. . . . . ...... . . .. .. . .. . .. . . . ... . . . .. . .
lowQualScore : 2 2 5 2 5 8 8 88888 8 0 2 22 8 8 0 6 0 8 8 88 0 00 8888 2222 88 5 5 2222 88888888888888888 7 7 5 88 7 0 000 0000000000000000000000000 4 7 99999 99 8 7 5 33 7 7 7 22 7 88 33333333333333333 0 0 66 0 0 4 555555 8888 88 0 0 2 8888 22 22 8 0 0 8 444444444444444 6 7 0000000000000 777 7 7 5 3 5 0000000000000 00 000000000000000000000000000 0 44444444 777 88888888 2 888 555 5555 7 6 7 7 111111 3 4 0 6 00 000 0 7 99 99 9 55 0 44444 5555555555 0 11 444444444 0 0 0 77777 7 7 7 7 7 7 666 33 4 7 2 7 666666 2 0 99 00 0 55 0 55 0 2 7 888 4 4 4 55 7 7
consensus : NTTCACACCTGTGTCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CTGA-GTTCACATAAACCTCACCT-G-TGTTTCACACTANAAAATAAAACT-TGTTTTACC--TGAACTCCAG-A-TTTG-----TTTG-G---T--TTTTTT-CAT-TTGGTATTAC--AATTTCTGAGAAAAAAGGTCG---AAAA----TTTCC--GGA-AACTAGT--AAAAGTG-TACCC-TTGNT--GATTTAGTTGGAAC-AAAAATGAATATT-A-TTTATGA--CAAAGCTA-CTGAT--TAAAATG-GTTAACAA-AAAAAT-TG-TAATGGGAAAAC-CTAG-CTAAGGAATTTAACAGTAGAGATGGTACAANTATCAGGAC--N-TC-AACTCAAGTAACATCAT-TATAG-----AAAAA-----CTTTTAAAATCAAGATTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATACGGAGAGNA-----T-CG----CACGTTT--ACAAAAAA-------------------------AAGGAATCT-C------ACA---CGAAAA--------TCCTCATCATCATAAAAAAG-AAATT-GGTC---TAAT-CTAT-CAC-GGA--TAGTTCTAGGTCATCNTAAAAACAGTTGG---TCAA-TAAGA--TNCAGCCTTTCTACTCC-ATCT-AT--GTGGTCTTTTATA---G--T--TAG-AA-TAACA-CT---ATCTTT-AA-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGAGACGAGCTTAC--TCCTG-AG--AA-GC-AG-GTGTGAAAC-AGGTTT-ATAAAATGTG-AGCC---CTTCT-TA-CAGGTAAACCTG-GTTTAAACACGGG-TGTG-AATACGGCCAT
Reference ( gi|2 ) : ATTCACACCTGTGGCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACACT-TAAAATAAAACT-GGTTTTACC--TGAACTCCAG-A-TTTG-----TTTG-G---G--TTTTTT-CAT-TTGGTATTAC--AATTTCTGAGAAAAAAAGTCG---AAAA----TATCC--ATATAACTAGTTAGAAAGTG-TACCC-TTGGT--GATTTAGATGGAAC-AAAAATGAATAGT-A-TTGATGA--CAAAGCTA-CTGAT--TAAAATG-GCTAGCAAGAAAAAA-TG-TAATAGGAAAAC-CTAG-CTAAGGAAT-----AGTAGAAATGGTACAATTACCAGGAC--T-TC-AACTCGAGTAACATCAT-TATAG-----GAAAA-----CTTTTAAAATCAAGAGTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATAAGGAGAGAA-----T-T-----CACGTTT--ACAAAAAA-------------------------C-GAAATCT-C------ACA---CGAAAA--------TCCTCATCATCATAAAAACG-AAATT-GGTT---TAAT-CTAT-CAT-GGA--TAGGTCTGGGTCCTCTTAAAAACAGTTGG---TCAA-TAAGA--TTCAGCTTTTCTACTCC-TTCT-AT--GTTGTCTTTTATA---G--T--AAG-AA-TAATA-C----ATCTTT-AA-CA-TTT-----AA-ACC-TACTCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGAGACGAGCTCAC--TCCTG-AG--AA-TC-AG-GTGTGAAAC-AGATTT-ATAAAATGTG-AGCC---CTTCT-TA-CAGGTAAACCTA-GTTTAAACATAGG-TGTG-AATACGGCCAT
gi|7 : TTCACACCTGTGTCT-AGGTA-GC-AGATTTACAGAGTAAGCCTAGCTTTGTCAAATAAACCAAGGTTTAAATATCCCATTTGAG-CTGA-GTGCACATAAACCTCACC--G-TTGTTCACACTAAAAAATAAAACT-GG-TTTACCTTTGAACTCCAG-A--TTG-----TTTGCG---GTTTTTTTT-TAT-TT-GTATAACA-AATTTCTGAGAAAAAAGGTCG---AAAAAAACTTTCC--CAAAAACTAG---AAAAGTG-TACCT-ATGATTAGATTTAGTTTTAAC-AACAA-AAATTGT-A-ATGGAAA--CCTAGCTA-
gi|10 : gcccatatTTCACACCTGTG-CTTAG-TAAGC--AATATACG-AGTAAACG-AGTTA---CAAGTAAACCA-----TAAAT--CCAGT--GAG-C-GA--TTCACA-AAACCTCACCT-G-T-TTTCACACTATAAAATAAAACT-TG--TTACC--T-AACTCCAGAA-TTGG-----GTTG-GTTTT--TTTTTT-CAT-T--GTA-TAC--AA-TGCTGCAGAAAAACGTCG---AAAA----T-TCTTAGTGTGACTCGT----AAGTGTTACAC---GGT--AGTTTagaaaata
gi|14 : TTCACACGTGTGTTTTAGGTAAGCTAGATTTATGGAGAATGCCTAGTT----CAGGTAAACCG-GGTTTAAAT--CCCATTTGAGCCCGAGGTTC-CATAAACCTCACTT-GTTGTTTCACAC
gi|1 : ACCTGTGTCTTAGGTAAGCTAGATTTACG
gi|18 : tTTACAG-GTAAACCTGGTT----TAAATA---CA-GGTGTGAAT--nnnnnnnnnnnnnnnnnnnnnnnnnaccggagtaaacctagtcaagtaaaccaggttaaatcccagttgagctagttcacataaacctcacctagtgtttcacactaagattaaaacttgttttacctgaactccagaatttgtttggttttttttcatttggtattaccaaatttcgagaaaaacggtcgaaaattccagaactctagagtgtaccccttattgatttagtggaacaaaaatgaatattatttatgacaaagcttctgattaaaatgtgttaacaaaaacttgtgatagctaacaaaggaatttaacagttagaatggtgtaaatatcaggactatcaaactcaagtagcatgattatagaaaaaaaaaacatttaaaatcaagagttggttctagatcatttccatgccatgtccattatacggagagtatcgtacgtttacaaaaaaaaccaaacaaaaaaaaccaacaacccggaatctcacaagaaaatcctcctcatcataaaaaagaaattggtctaatcctatcatggatagttctaggtcatctaaaaacagttggtcaataagattcagcctttctactccatctatgtggtcttttatagttagaataactcacttttaacatttaaaacctacctagaccagtttaggatttactctaatttctgagatgagcttactcctgagaaaaacagtgtgaaacaagtttataaatgtgagcgcttcttacaggtaaacctggtttaaacacagtgtgaaatacggcca
gi|1 : gcccttcCGGAGTAAACCTAGT-----CAAGTAAACCA-GGTT-AAAT--CCCAGTTGAG-CT-A-GTTCACATAAACCTCACCTAG-TGTTTCACACT-AAGATTAAAACT-TGTTTTACC--TGAACTCCAG-AATTTG-----TTTG-G---T--TTTTTTTCAT-TTGGTATTACCAAATTTC-GAGAAAAACGGTCG---AAAA----T-TCC--AGA--ACT--CTAGA--GTG-TACCCCTTATT--GATTTAG-TGGAAC-AAAAATGAATATT-A-TTTATGA--CAAAGCTT-CTGAT--TAAAATGTGTTAACA--AAAACT-TG-TGATAG-------CTAA-CAAAGGAATTTAACAGTTAGAATGGTGTAAATATCAGGAC--TATCAAACTCAAGTAGCATGAT-TATAGAAAAAAAAAA-----CATTTAAAATCAAGAGTT-GGTTCT---A---------GAT---CATTTCCATGCCA-TGTCCATTATACGGAGAGTA-----T-CG----TACGTTT--ACAAAAAAAACCAAACAAAAAAAACCAACAACCC-GGAATCT-C------ACA---AGAAAA--------TCCTCCTCATCATAAAAAAG-AAATT-GGTC---TAATCCTAT-CAT-GGA--TAGTTCTAGGTCATC-TAAAAACAGTTGG---TCAA-TAAGA--TTCAGCCTTTCTACTCC-ATCT-AT--GTGGTCTTTTATA---G--T--TAG-AA-TAACT-C----ACTTTT-AA-CA-TTTA----AA-ACC-TAC-CTA-G-ACCA--GTTTAGGATTTACTCTAATTTCTGAGATGAGCTTAC--TCCTG-AGAAAA-AC-A--GTGTGAAAC-AAGTTT-AT-AAATGTG-AGCG---CTTCT-TA-CAGGTAAACCTG-GTTTAAACACA-G-TGTGAAATACGGCCAacggccataa
gi|8 : tacctgtgtcttaggtaagctagatttacgnnnnnnnnnnnnnnnnnnnnnnnnnacTTGAGAT--TCC-TTTGAG-CTGA-GTTCACATACAC--TACCT-GCTGATTCACACT-C--AATAAAACTCTGTTTTACC--TGAA--TCAG-A-TTTGGTTTTTTTT-T---T--TTTTTT-CATCTTGG--TTAC---ATTTCTGAGAAAAACGGTTGTGCAAAA----TTTCC--------CCAATC---------TACCT-----T--GATTTAGTTGCGACAAAAAATGAAT-TT-ATTTTATGACCCAAGCCTACCTGAT--TAAAATT-GT-----------AC-TGTTGATGGGAAAACACTAGCCTAAGGAATTTAA-AGT-GAAATGGT
gi|3 : --TTGTTT-CAT-TTGGTATTAC--AATTTCTGAGCAAAAAGGTCG---AAAA----TTTCC--AGA--ACTGG---AAAAGAA-TACCC-TTATT--GATTTAATTGGAGG-AAAAATGAATATT-A-TTTATGA--CAAAGCTA-ATGAT--TAAAATG--TTAACAA---AAAT-TG-TAATGGGAAAAC-CTAG-CAAAGGAAT------TTA--------ACAGTTATCTGGAC--A-TC-AACTCAAGTAACATCAT-TATAG-----AAAAA-----CTTTAAAAATCAAGATTT-TGTTCT---A---------AAT---CATTTCCAAG-CA-TGTCCATTTTATGGAGAGTA-------T-----CACGTTT--ACAATAAA-------------------------A-GGAATCT-CACAATGACA---CGAAAA--------TCCTCATCATCATAAAAAAG-AAATT-GGTCCAGTAAT-CTAT-CAT-GG-----NNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNN-NNNGA--TTCAGCCT---TACTCC-ATCT-AT--GTGGTCTTTTATA---G--T--GAG-AA-TAACA-CT---ATCTTT--A-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GGTTTAC-------------AC-------------TG-AG--AA-AC-AG-GTGTGAAAC-AAGTTTAATAAAATGTG-AG-C---CTTCTCCA-CAGG-----------CTAAACATGGG-TGTG-AATACGGgta
gi|9 : cTTCT-CAT-TTGGTATTAC--ATTGGCTGAG-AAGAAAGT
gi|17 : AAA----TTTCC--A-A-AACTAG---AAAAGTG-TACCC-TTGTT--GATTTAGTTGGAAC-TAAAAGGAATATT-A-TTTATGA--CAAAGCTA-CTGgtacccttactgatttagtcgggtcaaaaaaggatgtaattgaaagcaaaggcactaatgccaaaatgattaacaagaaaaaattggaatgggaagactttgctaaggaatttaacagtagagatggttcaaataccaagatatcctcttagctaaatatttggttctagatcatttccaagcgtgcccattatacggagagtat
gi|9 : AGAAAGTG-TACCC-TTACT--GATTTAGTCGGGTC-AAAAAAGGAT-GTAA-TTGAAAG--CAAAGGCA-CTAATGCCAAAATG-ATTAACAAGAAAAAATTG-GAATGGGAAGAC-TTTG-CTAAGGAATTTAACAGTAGAGATGGTTCAAATACCAAGAT--A-TC---CTC-----------T-T------------AG-----CT----AAAT----ATTT-GGTTCT---A---------GAT---CATTTCCAAG-CG-TGCCCATTATACGGAGAGTA-----T-
gi|7 : ttctcatttggtattacattggctgagaTAACAACAAAAAT-TG-TAATGG--AAAC-CTAG-CTAAGAAA
gi|5 : gcccatatttcacacctgtgtctaggtagcagatttacagagtaagcctagctttgtcaaataaaccaaggtttaaatatcccatttgagctgagtgcacataaacctcaccgttgttcacactaaaaaataaaactggtttacctttgaactccagattgtttgcggtttttttttatttgtataacaaatttctgagaaaaaaggtcgaaaaaaactttcccaaaaactagaaaagtgtacctatgattagatttagtttAGAGGTGGTA-AATTATCAGG-CGAT-TC-AACC--AGTAACAT-GTATATAG-----AAAGG-------TTTAAAATCAAGAATT-GGTTCTA--A---------GAT---CATTTCCATG-CA-T-TCAATT-TACGAAGAGGA-----T-C-----GACGTGTGAGCAAAAAA-------------------------A-TATATGTGT------ATAAGTCGTAAAGAAGTAGGTCTTC-TCATC-TAAAAAAT-AAATTGGGTC---TAAT-CCATCCAT--GA--T---TCTAGGGTATC-TAAAAA-AG--GG---T-AA-TAAGA--TT--GC-CTTCTAC------CTGAT--G-GGTCTTTTAGA---G--T--TAGAAA-TAACA-C-----TATGT-AA-CA-TTT------A-ACG-TGC-CTA-GAACCA-GGTTAT-GATTTACGCTAA-TACTGAGata
gi|19 : aaaaagaagggaattaaccattgaggaATCAT-TATAG-----AAAAAAAAAACTTTTAAAATCAAGAGTT-GGTTCgataatcgtatgcacctgagga
gi|6 : TTTTAAAATCAAGATTT-GGTTCT---ATTAAAGATAGAT---CATTTCCAAG-CA-TGTTCATTACACGGAGAGAA-----C-TGGTATCAAGTTT--ACAAAAAA-------------------------AAGGAATCT-C------ACA---CGAAAA--------TCCTCATCATCATAAAAAAG-AAATT-GTTC---TAAT-CGAT-CAT-GGA--TAGTTCTAGGTCATCATAAAAG-AGTTGG---TCAA-TAAGG--TGCAGCCTTTCTACTTC-ATCT-AT--TTGGTCTTTTATA---G--T--TAG-AA-TAACA-C-----TCTTT-AA-CATTTT-----AA-ACC-TACCCTA-G-ACCA-GGTTT--GATTTAGCCTAATTTCTGAGATGAGCTTGC--TCTTG-AG--AA-GC-AG-GTGTGAAAC-AGGTTT-ATAAAA
gi|4 : AAAATCAAGATTTTGGTTCTTAAA---------GATAATCATTTCCAAG-CAATGTTCATTACACGACGAGAAACTGTTAT-----CAAGTTT--ACAAAAAA-------------------------AAGGAATCT-C------ACA---CGAAAAA-------TCCTCATCATCATAAAAAAGTAAATT-G-TT---CAAT-C-GT-CATTGGAACTAGTTCTAGGTCATCATAAAAG-AGTTTGAGTTTAAGTAAGGGGTGCAGCCTTTCTACTTCATTCT-AT--TTGGTCTTTTATA---GGTT--AAG-AAATAACA-CT---ATCTTT-AATCA-TTTT----AA-ACC-TACCCTA-G-ACCATGGTTTA-GATTTAGCCTAATTTCTGAGAAGAGCTTGCCTTCTTGTAG--AAGGC-A--GTGTGAAACGAGGTT---TAAAATGTGAAGCG---CTTCT-TAGCAGGTAAATCC---TTTTAACAAGGG-TGTG-AAnnnnnnnnnnnnnnnnnnnnnnnnntatttcaca
gi|13 : taa------ACA---CGAAAA--------TTGTCATCATCATAAAAAAG-AA------TC---CAAT-CTAT-CAC-AGA--TAATTCTAGGTCATCTTAAAAAGAGATGG---TCCA-TAAGA--CCCAGCCTTTCTATTCT-ATCT-AT--TTGGTATTCCATA---G--T--TGG-AA-TAACACC----ACCTTT-AA-TA-T
gi|11 : ---TAAT-ATAT-CAC-GGA--TAGTTCCAGGTCCTCC-GAAAACAGT-------CAA-GAATA--CCAAGCCTTTCTACTCC-ATCA-AT--GTGGTCTTCCATA----------AG-A--------------CCTTT-AA-CA-TTT-----AA-ACG-TGTCCTA-G-ACCA-AGATTA-GGGATACACTAATGTCTGAGATGAGCTTTC--TTCTG-AG--AA-GT-AG-ATGTGAAAC-AGGTTT-ATAAAAGGTG-AATC---CTTCT-TT-CAGG
gi|12 : cTCC-ATCT-ACTGGTGGTCTTTTACATAGG--TTGGAG-AA--AACA-CTACTATCTTTTAA-CA-TTTTGAAGAACGCCATACCCTAAG-ACCA-GGGT----ATCTATC--GGTTT---ACACGGA-------------AG--AA-AC-AGAGTGTGAAAC-A--TTT-ATAAA-TGTG-AGCC---CTTCT-CA-CAGGAAGACCTG-GTTTAAACATGGATTGTG--ATACG
gi|15 : AGCTTAC--TCCTG-AG--AA-AC-AG-GTGTGAAAC-AAGTTT-ATAAAATGTG-AGCC---CTTCT-TA-CAGGTAAACCTG-GTTTAAACACAGG-TGTG-AATACGGCCAT
gi|7 : TCAC--ACCTG-TG-----TCTAG-GT----AGC-AGATTT-ACAGA--GTA-AGCCTAGCTTTG-T--CAAATAAACCAAGGTTTAAATATaa
gi|18 : gcccatattGCC---CTTCT-TA-CAGGTAAACCTG-GTTTAAATACAGG-TGTG-AATACGGCCATcccatttgagctgagtgcacataaacctcaccgttgttcacactaaaaaataaaactggtttacctttgaactccagattgtttgcggtttttttttatttgtataacaaatttctgagaaaaaaggtcgaaaaaaactttcccaaaaactagaaaagtgtacctatgattagatttagttttaacaacaaaaattgtaatggaaacctagctaagaaaata
gi|20 : -TA-CAGGTAAACCTG-GTTTAAACATAGG-TGTT-AATATGGCCATaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GGTATTACAATGGCTGGAAAGAAATGTCCAAATGTTACAGAACTAGAAAAGATTAGTGGGGTCAAAAAGGAATTATATTGAAAACAAAGCACT
Alignments
lowQualScore : 1 22222 1 22 11 22222 22222 11 11111 444444444444444 11111111 1111 11111111 22 2222222 11 2222 11111 11111 2222222222222 111 44444444 9999999999999999999999999999999999 111111 111 1 1 11111 111 111111 11111
lowQualScore : 5 0 0 0 0 55555 8 3 99 1 6 4 6 6 3 2 22 88 5 11 8 88 00000 88888 5 5 11 0 0 888 11111 2 444444444444444 3 00000000 0000 5 0 3 5 1 77 5 99 33333333 3 22 3 6 6 6 6 2 6 6666666 7 22 3 0 0000 88 8 77 66666 66666 3 5 9999999999999 000 5 5 1 1 22222222 99 0000000000000000000000000000000000 666666 0 5 000 1 5 66 888 5 2 5 66 0 3 11111 5 66 1 0 4 4 66 222 66 66 4 444444 4 4 8 77777 5 5 4 5 5 5 888 4 333 5 55 66 66 4 66 55 77 5 2 5 5 4 4 0 1 55 5 5
lowQualScore : . . . . . ..... . . .. . . . . . . . .. .. . .. . .. ..... ..... . . .. . . ... ..... . ............... . ........ .... . . . . . .. . .. ........ . .. . . . . . . . ....... . .. . . .... .. . .. ..... ..... . . ............. ... . . . . ........ .. .................................. ...... . . ... . . .. ... . . . .. . . ..... . .. . . . . .. ... .. .. . ...... . . . ..... . . . . . . ... . ... . .. .. .. . .. .. .. . . . . . . . . .. . .
lowQualScore : 6 8 8 6 8 88888 0 2 22 7 7 2 7 7 3 5 22 88 6 00 0 88 00000 00000 7 7 99 1 1 888 11111 0 000000000000000 4 00000000 8888 0 2 9 7 3 99 0 22 00000000 2 55 2 7 7 7 7 5 7 5555555 8 22 8 8 0000 88 6 77 77777 77777 2 0 6666666666666 000 7 7 7 0 22222222 22 0000000000000000000000000000000000 444444 7 7 000 4 7 44 888 0 0 0 99 8 2 88888 0 99 0 1 4 4 11 222 11 11 4 666666 4 4 9 55555 0 0 5 0 0 0 888 5 444 0 66 11 11 4 11 66 55 0 2 0 7 4 4 4 4 44 0 0
consensus : NTTCACACCTGTGTCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACACTATAAAATAAAACT-TGTTTTACC--TGAACTCCAG-A-TTTG-----TTTG-G-T-TTTTTTT-CAT-TTGGTATTAC--AATTTCTGAGAAAAAAGGTCG---AAAA-----TTTCCAGA-AA-CTAG---AAAAGTGTACCC-TTGNT--GATTTAGTT---GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTA-CTGAT--TAAAAT-G-GTT--AACAA--AAAAATTG-TAATGGGAAAAC-CTAG-CTAAGGAATTTAACAG-T------AGAGATGGTACAANTATCAGGAC-A--TC-AACTCGAGTAACAT-CATTATAG-----AAAA-----ACTTTTAAAATCAAGANTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATACGGAGAGNATC-G----CACGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TC---TAAT-CTATCA-CGGA--TAGTTCTAGGTCATCNTAAAAACAGTT---GGTCAA-TAA--GATTCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACACTA---TCTTT-AA-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTTA--C--TCCTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACGGG-TGTG-AATACGGCCAT
Reference ( family-2548 ) : NTTCACACCTGTGTCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CTGA-GTTCACATAAACCTCACCT-G-TGTTTCACACTANAAAATAAAACT-TGTTTTACC--TGAACTCCAG-A-TTTG-----TTTG-G---TTTTTTT-CAT-TTGGTATTAC--AATTTCTGAGAAAAAAGGTCG---AAAA-----TTTCCGGA-AA-CTAGT--AAAAGTGTACCC-TTGNT--GATTTAGTT---GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTA-CTGAT--TAAAAT-G-GTT--AACAA--AAAAATTG-TAATGGGAAAAC-CTAG-CTAAGGAATTTAACAG-T------AGAGATGGTACAANTATCAGGAC-N--TC-AACTCAAGTAACAT-CATTATAG-----AAAA-----ACTTTTAAAATCAAGATTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATACGGAGAGNATC-G----CACGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TC---TAAT-CTATCA-CGGA--TAGTTCTAGGTCATCNTAAAAACAGTT---GGTCAA-TAA--GATNCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACACTA---TCTTT-AA-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTTA--C--TCCTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACGGG-TGTG-AATACGGCCAT
gi|1 : ACCTGTGTCTTAGGTAAGCTAGATTTACG
gi|1 : tCGGAGTAAACCTAGT-----CAAGTAAACCA-GGTT-AAAT--CCCAGTTGAG-CT-A-GTTCACATAAACCTCACCTAG-TGTTTCACACTA-AGATTAAAACT-TGTTTTACC--TGAACTCCAG-AATTTG-----TTTG-G---TTTTTTTTCAT-TTGGTATTACCAAATTTC-GAGAAAAACGGTCG---AAAA-----TT-CCAGA-ACTCTAG------AGTGTACCCCTTATT--GATTTAGT----GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTT-CTGAT--TAAAAT-GTGTT--AAC-A--AAAACTTG-TGATAG-------CTAA-CAAAGGAATTTAACAGTT------AGA-ATGGTGTAAATATCAGGACTA--TCAAACTCAAGTAGCAT-GATTATAGAAAAAAAAA-----ACATTTAAAATCAAGAGTT-GGTTCT---A---------GAT---CATTTCCATGCCA-TGTCCATTATACGGAGAGTATC-G----TACGTTTA--CAAAAAAA---------ACCAAACAAAAAAAACCAACAACCCGGAATCTC------ACAAG-AAA---ATCCTCCTCATCATAAAAAAG-AAATTGG-TC---TAATCCTATCA-TGGA--TAGTTCTAGGTCATC-TAAAAACAGTT---GGTCAA-TAA--GATTCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACTC-A---CTTTT-AA-CA-TTTA----AA-ACC-TA-CCTA-G-ACCA--GTTTAGGATTTACTCTAATTTCTGA-GATGAGCTTA--C--TCCTG-AGAAAA-ACA--GTGTGAAAC-AAGTTT-AT-AAATGTG-AGCGCTTCT-TA-CAGGTAAACCTGGTTTAAACAC-AG-TGTGAAATACGGCCAnnnnnnnnnnnnnnnnnnnnnnnnnaccggagtaaacctagtcaagtaaaccaggttaaatcccagttgagctagttcacataaacctcacctagtgtttcacactaagattaaaacttgttttacctgaactccagaatttgtttggttttttttcatttggtattaccaaatttcgagaaaaacggtcgaaaattccagaactctagagtgtaccccttattgatttagtggaacaaaaatgaatattatttatgacaaagcttctgattaaaatgtgttaacaaaaacttgtgatagctaacaaaggaatttaacagttagaatggtgtaaatatcaggactatcaaactcaagtagcatgattatagaaaaaaaaaacatttaaaatcaagagttggttctagatcatttccatgccatgtccattatacggagagtatcgtacgtttacaaaaaaaaccaaacaaaaaaaaccaacaacccggaatctcacaagaaaatcctcctcatcataaaaaagaaattggtctaatcctatcatggatagttctaggtcatctaaaaacagttggtcaataagattcagcctttctactccatctatgtggtcttttatagttagaataactcacttttaacatttaaaacctacctagaccagtttaggatttactctaatttctgagatgagcttactcctgagaaaaacagtgtgaaacaagtttataaatgtgagcgcttcttacaggtaaacctggtttaaacacagtgtgaaatacggcca
gi|10 : tacctgtgtcttaggtaagctagatttacgnnnnnnnnnnnnnnnnnnnnnnnnnacTTCACACCTGTG-CTTAG-TAAGC--AATATACG-AGTAAACG-AGTTA---CAAGTAAACCA-----TAAAT--CCAGT--GAG-C-GA--TTCACA-AAACCTCACCT-G-T-TTTCACACTATAAAATAAAACT-TG--TTACC--T-AACTCCAGAA-TTGG-----GTTG-GTTTTTTTTTT-CAT-T--GTA-TAC--AA-TGCTGCAGAAAAACGTCG---AAAA-----TT
gi|11 : C---TAAT-ATATCA-CGGA--TAGTTCCAGGTCCTCC-GAAAACAGT-------CAA-GAA--TACCAAGCCTTTCTACTCCA-TCA-AT--GTGGTCTTCCATA--------A--G----------A---CCTTT-AA-CA-TTT-----AA-ACG-TGTCCTA-G-ACCA-AGATTA-GGGATACACTAATGTCTGA-GATGAGCTTT--C--TTCTG-AG--AA-GTAG-ATGTGAAAC-AGGTTT-ATAAAAGGTG-AATCCTTCT-TT-CAGGcttagtgtgactcgtaagtgttacacggtagttt
gi|12 : TCCA-TCT-ACTGGTGGTCTTTTACATAGGTTGGA--G-AA-AACACTACTATCTTTTAA-CA-TTTTGAAGAACGCCATACCCTAAG-ACCA-GGGT----ATCTATC----------------GGTTTA--C--ACGGA-AG--AA-ACAGAGTGTGAAAC-A--TTT-ATAAA-TGTG-AGCCCTTCT-CA-CAGGAAGACCTGGTTTAAACATGGATTGTG--ATACG
gi|13 : ------ACACG-AAA---ATTGTCATCATCATAAAAAAG-AA------TC---CAAT-CTATCA-CAGA--TAATTCTAGGTCATCTTAAAAAGAGAT---GGTCCA-TAA--GACCCAGCCTTTCTATTCTA-TCT-AT--TTGGTATTCCATA---GTT--G--G-AATAACACCA---CCTTT-AA-TA-T
gi|14 : TTCACACGTGTGTTTTAGGTAAGCTAGATTTATGGAGAATGCCTAGTT----CAGGTAAACCG-GGTTTAAAT--CCCATTTGAGCCCGAGGTTC-CATAAACCTCACTT-GTTGTTTCACAC
gi|15 : AGCTTA--C--TCCTG-AG--AA-ACAG-GTGTGAAAC-AAGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACAGG-TGTG-AATACGGCCAT
gi|16 : GGTATTAC--AATGGCTGGAAAGAAATGTCC---AAAT-----GTTACAG--AA-CTAG---AAAAG---A--------------TTAGTG---GGGTC-AAAAAGGAATTATA-TTGAAAA--CAAAGC-A-CTaa
gi|17 : AAA-----TTTCCA-A-AA-CTAG---AAAAGTGTACCC-TTGTT--GATTTAGTT---GGAAC-TAAAAGGAATATTA-TTTATGA--CAAAGCTA-CTG
gi|18 : GCCCTTCT-TA-CAGGTAAACCTGGTTTAAATACAGG-TGTG-AATACGGCCAT
gi|19 : AT-CATTATAG-----AAAAAAAAAACTTTTAAAATCAAGAGTT-GGTTCaa
gi|2 : TTCACACCTGTGGCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACACT-TAAAATAAAACT-GGTTTTACC--TGAACTCCAG-A-TTTG-----TTTG-G---GTTTTTT-CAT-TTGGTATTAC--AATTTCTGAGAAAAAAAGTCG---AAAA-----TATCCATATAA-CTAGTTAGAAAGTGTACCC-TTGGT--GATTTAGAT---GGAAC-AAAAATGAATAGTA-TTGATGA--CAAAGCTA-CTGAT--TAAAAT-G-GCT--AGCAAG-AAAAAATG-TAATAGGAAAAC-CTAG-CTAAGGAAT-----AG-T------AGAAATGGTACAATTACCAGGAC-T--TC-AACTCGAGTAACAT-CATTATAG-----GAAA-----ACTTTTAAAATCAAGAGTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATAAGGAGAGAATT------CACGTTTA--CAAAAAAC----------------------------------GAAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAACG-AAATTGG-TT---TAAT-CTATCA-TGGA--TAGGTCTGGGTCCTCTTAAAAACAGTT---GGTCAA-TAA--GATTCAGCTTTTCTACTCCT-TCT-AT--GTTGTCTTTTATA---GTA--A--G-AATAATAC-A---TCTTT-AA-CA-TTT-----AA-ACC-TACTCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTCA--C--TCCTG-AG--AA-TCAG-GTGTGAAAC-AGATTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTAGTTTAAACATAGG-TGTG-AATACGGCCAT
gi|20 : a-TA-CAGGTAAACCTGGTTTAAACATAGG-TGTT-AATATGGCCAT
gi|3 : TTGTTT-CAT-TTGGTATTAC--AATTTCTGAGCAAAAAGGTCG---AAAA-----TTTCCAGA-A--CTGG---AAAAGAATACCC-TTATT--GATTTAATT---GGAGG-AAAAATGAATATTA-TTTATGA--CAAAGCTA-ATGAT--TAAAAT-G--TT--AACAA--AAA--TTG-TAATGGGAAAAC-CTAG-CAAAGGAATTTAACAG-T--------------------TATCTGGAC-A--TC-AACTCAAGTAACAT-CATTATAG-----AAAA-----ACTTTAAAAATCAAGATTT-TGTTCT---A---------AAT---CATTTCCAAG-CA-TGTCCATTTTATGGAGAGTAT-------CACGTTTA--C-AATAAA---------A------------------------GGAATCTCACAATGACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TCCAGTAAT-CTATCA-TGG-----NNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNN-NNN--GATTCAGCCT---TACTCCA-TCT-AT--GTGGTCTTTTATA---GTG--A--G-AATAACACTA---TCTTT--A-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GGTTTAC--------------AC---------------TG-AG--AA-ACAG-GTGTGAAAC-AAGTTTAATAAAATGTG-AG-CCTTCTCCA-CAGG----------CTAAACATGGG-TGTG-AATACGG
gi|4 : cAAAATCAAGATTTTGGTTCTTAAA---------GATAATCATTTCCAAG-CAATGTTCATTACACGACGAGAAACTGTTATCAAGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACGAAAA---ATCCTCATCATCATAAAAAAGTAAATTGT-TC----AAT-C-GTCATTGGAACTAGTTCTAGGTCATCATAAAAG-AGTTTGAGTTTAAGTAAGGGGTGCAGCCTTTCTACTTCATTCT-AT--TTGGTCTTTTATAG--GTT--AAGA-AATAACACTA---TCTTT-AATCATTTT-----AA-ACC-TACCCTA-G-ACCATGGTTTA-GATTTAGCCTAATTTCTGA-GAAGAGCTTG--CCTTCTTGTAG--AAGGCA--GTGTGAAACGAGGTT---TAAAATGTGAAGCGCTTCT-TAGCAGGTAAATCC--TTTTAACAAGGG-TGTG-AA
gi|5 : taaAAGGGAATTAACCA-TTGAGGAAGAGGTGGTA-AATTATCAGG-C-GATTC-AACC--AGTAACATGTAT-ATAG-----AAAG-----G--TTTAAAATCAAGAATT-GGTTCT---AA--------GAT---CATTTCCATG-CA-T-TCAATT-TACGAAGAGGATC-G-----ACGTGTGAGCAAAAAAATATATGTGTA------------------------TAAGTCGT------AAA-G-AAGTAGGTCTTC-TCATC-TAAAAAAT-AAATTGGGTC---TAAT-CCATC--C--A--TGATTCTAGGGTATC-TAAAAA-AG-----GGT-AA-TAA--GATT--GCCTT-CTAC------CTGAT--G-GGTCTTTTAGA---GTT--A--GAAATAACACTA-----TGT-AA-CA-TTT------A-ACG-TG-CCTA-GAACCA-GGTTAT-GATTTACGCTAA-TACTGAGGATAATCGTATGC--ACCTG-AG--GA-
gi|6 : aaaaagTTTTAAAATCAAGATTT-GGTTCT---ATTAAAGATAGAT---CATTTCCAAG-CA-TGTTCATTACACGGAGAGAACT-GGTATCAAGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGT-TC---TAAT-CGATCA-TGGA--TAGTTCTAGGTCATCATAAAAG-AGTT---GGTCAA-TAA--GGTGCAGCCTTTCTACTTCA-TCT-AT--TTGGTCTTTTATA---GTT--A--G-AATAACAC-----TCTTT-AA-CATTTT-----AA-ACC-TACCCTA-G-ACCA-GGTTT--GATTTAGCCTAATTTCTGA-GATGAGCTTG--C--TCTTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAA
gi|7 : TTCACACCTGTGTCT-AGGTA-GC-AGATTTACAGAGTAAGCCTAGCTTTGTCAAATAAACCAAGGTTTAAATATCCCATTTGAG-CTGA-GTGCACATAAACCTCACC--G-TTGTTCACACTAAAAAATAAAAC--TGGTTTACCTTTGAACTCCAG-A--TTG-----TTTGCGGT-TTTTTTT-TAT-TT-GTATAACA-AATTTCTGAGAAAAAAGGTCG---AAAAAAACTTTCCCAAA-AA-CTAG---AAAAGTGTACCT-ATGATTAGATTTAGTTTTAACAAC-AAAAATnnnnnnnnnnnnnnnnnnnnnnnnntatttcaca
gi|7 : gcccatatCTA--TGAT--TAGATTTA-GTTTTAACAAC-AAAAATTG-TAATGG--AAAC-CTAG-CTAAGAAAtgtaatggaaacctagctaagaaaata
gi|8 : gcccatatttcacacctgtgtctaggtagcagatttacagagtaagcctagctttgtcaaataaaccaaggtttaaatatcccatttgagctgagtgcacataaacctcaccgttgttcacactaaaaaataaaactggtttacctttgaactccagattgtttgcggtttttttttatttgtataacaaatttctgagaaaaaaggtcgaaaaaaactttcccaaaaactagaaaagtgtacTTGAGAT--TCC-TTTGAG-CTGA-GTTCACATACAC--TACCT-GCTGATTCACACT---CAATAAAACTCTGTTTTACC--TGAA--TCAG-A-TTTGGTTTTTTTT-T---TTTTTTT-CATCTTGG--TTAC---ATTTCTGAGAAAAACGGTTGTGCAAAA-----TTTCCCCA-AT-CTA--------------CC-T---T--GATTTAGTT---GCGACAAAAAATGAAT-TTATTTTATGACCCAAGCCTACCTGAT--TAAAAT-T-GT--------------ACTGTTGATGGGAAAACACTAGCCTAAGGAATTTAA-AG-T-------GAAATGGTata
gi|9 : TTCT-CAT-TTGGTATTAC--A--TT-----------GGCTG---AGAA------------------------GAAAGTGTACCC-TTACT--GATTTAGTC---GGGTC-AAAAAAGGATGTAA-TTGAAAG--CAAAGGCA-CTAATGCCAAAAT-G-ATT--AACAAGAAAAAATTG-GAATGGGAAGAC-TTTG-CTAAGGAATTTAACAG-T------AGAGATGGTTCAAATACCAAGAT-A--TC---CTC------------TT------------A-----GCT----AAAT----ATTT-GGTTCT---A---------GAT---CATTTCCAAG-CG-TGCCCATTATACGGAGAGTATgta
Alignments
lowQualScore : 1 22222 1 22 11 1111 111111 11 11111 111111 11111111 1111 11111111 22 2222222 11 1 11111 11111 2222222222222 111 44444444 9999999999999999999999999999999999 111111 111 1 1 11111 111 111111 11111
lowQualScore : 5 0 0 0 0 55555 8 3 99 1 6 6 6 6 3 2 11 88 5 11 8 88 7777 222222 5 11 2 888 11111 2 666666 888 0 3 00000000 0000 5 0 3 5 1 77 5 99 33333333 3 22 3 6 6 6 6 2 6 6666666 7 22 3 8 8 88 1 77 66666 66666 1 5 9999999999999 000 5 5 1 1 22222222 99 0000000000000000000000000000000000 666666 0 5 000 1 5 66 888 5 2 5 66 0 3 11111 5 66 0 0 4 4 66 222 66 66 4 444444 4 4 8 77777 5 5 4 5 5 5 888 4 333 5 55 66 66 4 66 55 77 5 2 5 5 4 4 0 1 55 5 5
lowQualScore : . . . . . ..... . . .. . . . . . . . .. .. . .. . .. .... ...... . .. . ... ..... . ...... ... . . ........ .... . . . . . .. . .. ........ . .. . . . . . . . ....... . .. . . . .. . .. ..... ..... . . ............. ... . . . . ........ .. .................................. ...... . . ... . . .. ... . . . .. . . ..... . .. . . . . .. ... .. .. . ...... . . . ..... . . . . . . ... . ... . .. .. .. . .. .. .. . . . . . . . . .. . .
lowQualScore : 6 8 8 6 8 88888 0 2 22 7 7 3 7 7 3 5 44 88 6 00 0 88 0000 000000 7 99 0 888 11111 4 222222 888 1 4 00000000 8888 0 2 9 7 3 99 0 22 00000000 2 55 2 7 7 7 7 5 7 5555555 8 22 8 0 0 88 4 77 77777 77777 0 0 6666666666666 000 7 7 7 0 22222222 22 0000000000000000000000000000000000 444444 7 7 000 4 7 44 888 0 0 0 99 8 2 88888 0 99 8 1 4 4 11 222 11 11 4 666666 4 4 9 55555 0 0 5 0 0 0 888 5 444 0 66 11 11 4 11 66 55 0 2 0 7 4 4 4 4 44 0 0
consensus : NTTCACACCTGTGTCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACACTATAAAATAAAACT-TGTTTTACC--TGAACTCCAG-A-TTTG----TTT--GG--TTTTTTTTCAT-TTGGTATTAC--AATTTCTGAGAAAAAAGGTCG---AAAA-----TTTCCAGA-AA-CTAG---AAAAGTGTACCC-TTGNT--GATTTAGTT---GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTA-CTGAT--TAAAAT-G-GTT--AACAA--AAAAATTG-TAATGGGAAAAC-CTAG-CTAAGGAATTTAACAG-T------AGAGATGGTACAANTATCAGGAC-AT-C-AACTCGAGTAACAT-CATTATAG-----AAAA-----ACTTTTAAAATCAAGANTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATACGGAGAGNATC-G----CACGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TC---TAAT-CTATCA-CGGA--TAGTTCTAGGTCATCNTAAAAACAGTT---GGTCAA-TAA--GATTCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACACTA---TCTTT-AA-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTTA--C--TCCTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACGGG-TGTG-AATACGGCCAT
Reference ( family-2548 ) : NTTCACACCTGTGTCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACACTATAAAATAAAACT-TGTTTTACC--TGAACTCCAG-A-TTTG----TTT--GG--TTTTTTTTCAT-TTGGTATTAC--AATTTCTGAGAAAAAAGGTCG---AAAA-----TTTCCAGA-AA-CTAG---AAAAGTGTACCC-TTGNT--GATTTAGTT---GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTA-CTGAT--TAAAAT-G-GTT--AACAA--AAAAATTG-TAATGGGAAAAC-CTAG-CTAAGGAATTTAACAG-T------AGAGATGGTACAANTATCAGGAC-AT-C-AACTCGAGTAACAT-CATTATAG-----AAAA-----ACTTTTAAAATCAAGANTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATACGGAGAGNATC-G----CACGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TC---TAAT-CTATCA-CGGA--TAGTTCTAGGTCATCNTAAAAACAGTT---GGTCAA-TAA--GATTCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACACTA---TCTTT-AA-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTTA--C--TCCTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACGGG-TGTG-AATACGGCCAT
gi|1 : ACCTGTGTCTTAGGTAAGCTAGATTTACG
gi|1 : tCGGAGTAAACCTAGT-----CAAGTAAACCA-GGTT-AAAT--CCCAGTTGAG-CT-A-GTTCACATAAACCTCACCTAG-TGTTTCACACTA-AGATTAAAACT-TGTTTTACC--TGAACTCCAG-AATTTG----TTT--GG--TTTTTTTTCAT-TTGGTATTACCAAATTTC-GAGAAAAACGGTCG---AAAA-----TT-CCAGA-ACTCTAG---A---GTGTACCCCTTATT--GATTTAGT----GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTT-CTGAT--TAAAAT-GTGTT--AAC-A--AAAACTTG-TGATAG-------CTAA-CAAAGGAATTTAACAGTT------AGA-ATGGTGTAAATATCAGGACTAT-CAAACTCAAGTAGCAT-GATTATAGAAAAAAAAA-----ACATTTAAAATCAAGAGTT-GGTTCT---A---------GAT---CATTTCCATGCCA-TGTCCATTATACGGAGAGTATC-G----TACGTTTA--CAAAAAAA---------ACCAAACAAAAAAAACCAACAACCCGGAATCTC------ACAAG-AAA---ATCCTCCTCATCATAAAAAAG-AAATTGG-TC---TAATCCTATCA-TGGA--TAGTTCTAGGTCATC-TAAAAACAGTT---GGTCAA-TAA--GATTCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACTC-A---CTTTT-AA-CA-TTTA----AA-ACC-TA-CCTA-G-ACCA--GTTTAGGATTTACTCTAATTTCTGA-GATGAGCTTA--C--TCCTG-AGAAAA-ACA--GTGTGAAAC-AAGTTT-AT-AAATGTG-AGCGCTTCT-TA-CAGGTAAACCTGGTTTAAACAC-AG-TGTGAAATACGGCCAnnnnnnnnnnnnnnnnnnnnnnnnnaccggagtaaacctagtcaagtaaaccaggttaaatcccagttgagctagttcacataaacctcacctagtgtttcacactaagattaaaacttgttttacctgaactccagaatttgtttggttttttttcatttggtattaccaaatttcgagaaaaacggtcgaaaattccagaactctagagtgtaccccttattgatttagtggaacaaaaatgaatattatttatgacaaagcttctgattaaaatgtgttaacaaaaacttgtgatagctaacaaaggaatttaacagttagaatggtgtaaatatcaggactatcaaactcaagtagcatgattatagaaaaaaaaaacatttaaaatcaagagttggttctagatcatttccatgccatgtccattatacggagagtatcgtacgtttacaaaaaaaaccaaacaaaaaaaaccaacaacccggaatctcacaagaaaatcctcctcatcataaaaaagaaattggtctaatcctatcatggatagttctaggtcatctaaaaacagttggtcaataagattcagcctttctactccatctatgtggtcttttatagttagaataactcacttttaacatttaaaacctacctagaccagtttaggatttactctaatttctgagatgagcttactcctgagaaaaacagtgtgaaacaagtttataaatgtgagcgcttcttacaggtaaacctggtttaaacacagtgtgaaatacggcca
gi|10 : tacctgtgtcttaggtaagctagatttacgnnnnnnnnnnnnnnnnnnnnnnnnnacTTCACACCTGTG-CTTAG-TAAGC--AATATACG-AGTAAACG-AGTTA---CAAGTAAACCA-----TAAAT--CCAGT--GAG-C-GA--TTCACA-AAACCTCACCT-G-T-TTTCACACTATAAAATAAAACT-TG--TTACC--T-AACTCCAGAA-TTGG----GTT--GGTTTTTTTTTTCAT-T--GTA-TAC--AA-TGCTGCAGAAAAACGTCG---AAAA-----TTCTTAG
gi|11 : C---TAAT-ATATCA-CGGA--TAGTTCCAGGTCCTCC-GAAAACAGT-------CAA-GAA--TACCAAGCCTTTCTACTCCA-TCA-AT--GTGGTCTTCCATA--------A--G----------A---CCTTT-AA-CA-TTT-----AA-ACG-TGTCCTA-G-ACCA-AGATTA-GGGATACACTAATGTCTGA-GATGAGCTTT--C--TTCTG-AG--AA-GTAG-ATGTGAAAC-AGGTTT-ATAAAAGGTG-AATCCTTCT-TT-CAGGtgtgactcgtaagtgttacacggtagttt
gi|12 : TCCA-TCT-ACTGGTGGTCTTTTACATAGGTTGGA--G-AA-AACACTACTATCTTTTAA-CA-TTTTGAAGAACGCCATACCCTAAG-ACCA-GGGT----ATCTATC----------------GGTTTA--C--ACGGA-AG--AA-ACAGAGTGTGAAAC-A--TTT-ATAAA-TGTG-AGCCCTTCT-CA-CAGGAAGACCTGGTTTAAACATGGATTGTG--ATACG
gi|13 : ------ACACG-AAA---ATTGTCATCATCATAAAAAAG-AA------TC---CAAT-CTATCA-CAGA--TAATTCTAGGTCATCTTAAAAAGAGAT---GGTCCA-TAA--GACCCAGCCTTTCTATTCTA-TCT-AT--TTGGTATTCCATA---GTT--G--G-AATAACACCA---CCTTT-AA-TA-T
gi|14 : TTCACACGTGTGTTTTAGGTAAGCTAGATTTATGGAGAATGCCTAGTT----CAGGTAAACCG-GGTTTAAAT--CCCATTTGAGCCCGAGGTTC-CATAAACCTCACTT-GTTGTTTCACAC
gi|15 : AGCTTA--C--TCCTG-AG--AA-ACAG-GTGTGAAAC-AAGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACAGG-TGTG-AATACGGCCAT
gi|16 : GGTATTAC--AATGGCTGGAAAGAAATGTCC---AAAT-----GTTACAG--AA-CTAG---AAAAG---A--------------TTAGTG---GGGTC-AAAAAGGAATTATA-TTGAAAA--CAAAGC-A-CTaa
gi|17 : AAA-----TTTCCA-A-AA-CTAG---AAAAGTGTACCC-TTGTT--GATTTAGTT---GGAAC-TAAAAGGAATATTA-TTTATGA--CAAAGCTA-CTG
gi|18 : GCCCTTCT-TA-CAGGTAAACCTGGTTTAAATACAGG-TGTG-AATACGGCCAT
gi|19 : AT-CATTATAG-----AAAAAAAAAACTTTTAAAATCAAGAGTT-GGTTCaa
gi|2 : TTCACACCTGTGGCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACACT-TAAAATAAAACT-GGTTTTACC--TGAACTCCAG-A-TTTG----TTT--GG--GTTTTTT-CAT-TTGGTATTAC--AATTTCTGAGAAAAAAAGTCG---AAAA-----TATCCATATAA-CTAGTTAGAAAGTGTACCC-TTGGT--GATTTAGAT---GGAAC-AAAAATGAATAGTA-TTGATGA--CAAAGCTA-CTGAT--TAAAAT-G-GCT--AGCAAG-AAAAAATG-TAATAGGAAAAC-CTAG-CTAAGGAAT-----AG-T------AGAAATGGTACAATTACCAGGAC-TT-C-AACTCGAGTAACAT-CATTATAG-----GAAA-----ACTTTTAAAATCAAGAGTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATAAGGAGAGAATT------CACGTTTA--CAAAAAAC----------------------------------GAAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAACG-AAATTGG-TT---TAAT-CTATCA-TGGA--TAGGTCTGGGTCCTCTTAAAAACAGTT---GGTCAA-TAA--GATTCAGCTTTTCTACTCCT-TCT-AT--GTTGTCTTTTATA---GTA--A--G-AATAATAC-A---TCTTT-AA-CA-TTT-----AA-ACC-TACTCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTCA--C--TCCTG-AG--AA-TCAG-GTGTGAAAC-AGATTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTAGTTTAAACATAGG-TGTG-AATACGGCCAT
gi|20 : a-TA-CAGGTAAACCTGGTTTAAACATAGG-TGTT-AATATGGCCAT
gi|3 : TTGTTTCAT-TTGGTATTAC--AATTTCTGAGCAAAAAGGTCG---AAAA-----TTTCCAGA-A--CTGG---AAAAGAATACCC-TTATT--GATTTAATT---GGAGG-AAAAATGAATATTA-TTTATGA--CAAAGCTA-ATGAT--TAAAAT-G--TT--AACAA--AAA--TTG-TAATGGGAAAAC-CTAG-CAAAGGAATTTAACAG-T--------------------TATCTGGAC-AT-C-AACTCAAGTAACAT-CATTATAG-----AAAA-----ACTTTAAAAATCAAGATTT-TGTTCT---A---------AAT---CATTTCCAAG-CA-TGTCCATTTTATGGAGAGTAT-------CACGTTTA--C-AATAAA---------A------------------------GGAATCTCACAATGACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TCCAGTAAT-CTATCA-TGG-----NNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNN-NNN--GATTCAGCCT---TACTCCA-TCT-AT--GTGGTCTTTTATA---GTG--A--G-AATAACACTA---TCTTT--A-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GGTTTAC--------------AC---------------TG-AG--AA-ACAG-GTGTGAAAC-AAGTTTAATAAAATGTG-AG-CCTTCTCCA-CAGG----------CTAAACATGGG-TGTG-AATACGG
gi|4 : cAAAATCAAGATTTTGGTTCTTAAA---------GATAATCATTTCCAAG-CAATGTTCATTACACGACGAGAAACTGTTATCAAGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACGAAAA---ATCCTCATCATCATAAAAAAGTAAATTGT-TC----AAT-C-GTCATTGGAACTAGTTCTAGGTCATCATAAAAG-AGTTTGAGTTTAAGTAAGGGGTGCAGCCTTTCTACTTCATTCT-AT--TTGGTCTTTTATAG--GTT--AAGA-AATAACACTA---TCTTT-AATCATTTT-----AA-ACC-TACCCTA-G-ACCATGGTTTA-GATTTAGCCTAATTTCTGA-GAAGAGCTTG--CCTTCTTGTAG--AAGGCA--GTGTGAAACGAGGTT---TAAAATGTGAAGCGCTTCT-TAGCAGGTAAATCC--TTTTAACAAGGG-TGTG-AA
gi|5 : taaAAGGGAATTAACCA-TTGAGGAAGAGGTGGTA-AATTATCAGGCG-ATTC-AACC--AGTAACATGTAT-ATAG-----AAAG-----G--TTTAAAATCAAGAATT-GGTTCT---AA--------GAT---CATTTCCATG-CA-T-TCAATT-TACGAAGAGGATC-G-----ACGTGTGAGCAAAAAAATATATGTGTA------------------------TAAGTCGT------AAA-G-AAGTAGGTCTTC-TCATC-TAAAAAAT-AAATTGGGTC---TAAT-CCATC--C--A--TGATTCTAGGGTATC-TAAAAA-AG-----GGT-AA-TAA--GATT--GCCTT-CTAC------CTGAT--G-GGTCTTTTAGA---GTT--A--GAAATAACACTA-----TGT-AA-CA-TTT------A-ACG-TG-CCTA-GAACCA-GGTTAT-GATTTACGCTAA-TACTGAGGATAATCGTATGC--ACCTG-AG--GA-
gi|6 : aaaaagTTTTAAAATCAAGATTT-GGTTCT---ATTAAAGATAGAT---CATTTCCAAG-CA-TGTTCATTACACGGAGAGAACT-GGTATCAAGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGT-TC---TAAT-CGATCA-TGGA--TAGTTCTAGGTCATCATAAAAG-AGTT---GGTCAA-TAA--GGTGCAGCCTTTCTACTTCA-TCT-AT--TTGGTCTTTTATA---GTT--A--G-AATAACAC-----TCTTT-AA-CATTTT-----AA-ACC-TACCCTA-G-ACCA-GGTTT--GATTTAGCCTAATTTCTGA-GATGAGCTTG--C--TCTTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAA
gi|7 : TTCACACCTGTGTCT-AGGTA-GC-AGATTTACAGAGTAAGCCTAGCTTTGTCAAATAAACCAAGGTTTAAATATCCCATTTGAG-CTGA-GTGCACATAAACCTCACC--G-TTGTTCACACTAAAAAATAAAAC--TGGTTTACCTTTGAACTCCAG-A--TTG----TTTGCGG--TTTTTTTTTAT-TT-GTATAACA-AATTTCTGAGAAAAAAGGTCG---AAAAAAACTTTCCCAAA-AA-CTAG---AAAAGTGTACCT-ATGATTAGATTTAGTTTTAACAAC-AAAAATnnnnnnnnnnnnnnnnnnnnnnnnntatttcaca
gi|7 : gcccatatCTA--TGAT--TAGATTTA-GTTTTAACAAC-AAAAATTG-TAATGG--AAAC-CTAG-CTAAGAAAtgtaatggaaacctagctaagaaaata
gi|8 : gcccatatttcacacctgtgtctaggtagcagatttacagagtaagcctagctttgtcaaataaaccaaggtttaaatatcccatttgagctgagtgcacataaacctcaccgttgttcacactaaaaaataaaactggtttacctttgaactccagattgtttgcggtttttttttatttgtataacaaatttctgagaaaaaaggtcgaaaaaaactttcccaaaaactagaaaagtgtacTTGAGAT--TCC-TTTGAG-CTGA-GTTCACATACAC--TACCT-GCTGATTCACACT---CAATAAAACTCTGTTTTACC--TGAA--TCAG-A-TTTGGTTTTTT--TT--TTTTTTTTCATCTTGG--TTAC---ATTTCTGAGAAAAACGGTTGTGCAAAA-----TTTCCCCA-AT-CTA--------------CC-T---T--GATTTAGTT---GCGACAAAAAATGAAT-TTATTTTATGACCCAAGCCTACCTGAT--TAAAAT-T-GT--------------ACTGTTGATGGGAAAACACTAGCCTAAGGAATTTAA-AG-T-------GAAATGGTata
gi|9 : TTCTCAT-TTGGTATTAC--ATTGGCTGAG----AAG------------------------------------AAAGTGTACCC-TTACT--GATTTAGTC---GGGTC-AAAAAAGGATGTAA-TTGAAAG--CAAAGGCA-CTAATGCCAAAAT-G-ATT--AACAAGAAAAAATTG-GAATGGGAAGAC-TTTG-CTAAGGAATTTAACAG-T------AGAGATGGTTCAAATACCAAGAT-AT-C---CTC------------TT------------A-----GCT----AAAT----ATTT-GGTTCT---A---------GAT---CATTTCCAAG-CG-TGCCCATTATACGGAGAGTATgta
Alignments
lowQualScore : 1 22222 1 22 11 1111 111111 11 11111 111111 11111111 1111 11111111 22 2222222 11 1 11111 11111 2222222222222 111 44444444 9999999999999999999999999999999999 111111 111 1 1 11111 111 111111 11111
lowQualScore : 5 0 0 0 0 55555 8 3 99 1 6 6 6 6 3 2 11 88 5 11 8 88 7777 222222 5 11 2 888 11111 2 666666 888 0 3 00000000 0000 5 0 3 5 1 77 5 99 33333333 3 22 3 6 6 6 6 2 6 6666666 7 22 3 8 8 88 1 77 66666 66666 1 5 9999999999999 000 5 5 1 1 22222222 99 0000000000000000000000000000000000 666666 0 5 000 1 5 66 888 5 2 5 66 0 3 11111 5 66 0 0 4 4 66 222 66 66 4 444444 4 4 8 77777 5 5 4 5 5 5 888 4 333 5 55 66 66 4 66 55 77 5 2 5 5 4 4 0 1 55 5 5
lowQualScore : . . . . . ..... . . .. . . . . . . . .. .. . .. . .. .... ...... . .. . ... ..... . ...... ... . . ........ .... . . . . . .. . .. ........ . .. . . . . . . . ....... . .. . . . .. . .. ..... ..... . . ............. ... . . . . ........ .. .................................. ...... . . ... . . .. ... . . . .. . . ..... . .. . . . . .. ... .. .. . ...... . . . ..... . . . . . . ... . ... . .. .. .. . .. .. .. . . . . . . . . .. . .
lowQualScore : 6 8 8 6 8 88888 0 2 22 7 7 3 7 7 3 5 44 88 6 00 0 88 0000 000000 7 99 0 888 11111 4 222222 888 1 4 00000000 8888 0 2 9 7 3 99 0 22 00000000 2 55 2 7 7 7 7 5 7 5555555 8 22 8 0 0 88 4 77 77777 77777 0 0 6666666666666 000 7 7 7 0 22222222 22 0000000000000000000000000000000000 444444 7 7 000 4 7 44 888 0 0 0 99 8 2 88888 0 99 8 1 4 4 11 222 11 11 4 666666 4 4 9 55555 0 0 5 0 0 0 888 5 444 0 66 11 11 4 11 66 55 0 2 0 7 4 4 4 4 44 0 0
consensus : NTTCACACCTGTGTCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACACTATAAAATAAAACT-TGTTTTACC--TGAACTCCAG-A-TTTG----TTT--GG--TTTTTTTTCAT-TTGGTATTAC--AATTTCTGAGAAAAAAGGTCG---AAAA-----TTTCCAGA-AA-CTAG---AAAAGTGTACCC-TTGNT--GATTTAGTT---GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTA-CTGAT--TAAAAT-G-GTT--AACAA--AAAAATTG-TAATGGGAAAAC-CTAG-CTAAGGAATTTAACAG-T------AGAGATGGTACAANTATCAGGAC-AT-C-AACTCGAGTAACAT-CATTATAG-----AAAA-----ACTTTTAAAATCAAGANTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATACGGAGAGNATC-G----CACGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TC---TAAT-CTATCA-CGGA--TAGTTCTAGGTCATCNTAAAAACAGTT---GGTCAA-TAA--GATTCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACACTA---TCTTT-AA-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTTA--C--TCCTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACGGG-TGTG-AATACGGCCAT
Reference ( family-2548 ) : NTTCACACCTGTGTCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACACTATAAAATAAAACT-TGTTTTACC--TGAACTCCAG-A-TTTG----TTT--GG--TTTTTTTTCAT-TTGGTATTAC--AATTTCTGAGAAAAAAGGTCG---AAAA-----TTTCCAGA-AA-CTAG---AAAAGTGTACCC-TTGNT--GATTTAGTT---GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTA-CTGAT--TAAAAT-G-GTT--AACAA--AAAAATTG-TAATGGGAAAAC-CTAG-CTAAGGAATTTAACAG-T------AGAGATGGTACAANTATCAGGAC-AT-C-AACTCGAGTAACAT-CATTATAG-----AAAA-----ACTTTTAAAATCAAGANTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATACGGAGAGNATC-G----CACGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TC---TAAT-CTATCA-CGGA--TAGTTCTAGGTCATCNTAAAAACAGTT---GGTCAA-TAA--GATTCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACACTA---TCTTT-AA-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTTA--C--TCCTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACGGG-TGTG-AATACGGCCAT
gi|1 : ACCTGTGTCTTAGGTAAGCTAGATTTACG
gi|1 : tCGGAGTAAACCTAGT-----CAAGTAAACCA-GGTT-AAAT--CCCAGTTGAG-CT-A-GTTCACATAAACCTCACCTAG-TGTTTCACACTA-AGATTAAAACT-TGTTTTACC--TGAACTCCAG-AATTTG----TTT--GG--TTTTTTTTCAT-TTGGTATTACCAAATTTC-GAGAAAAACGGTCG---AAAA-----TT-CCAGA-ACTCTAG---A---GTGTACCCCTTATT--GATTTAGT----GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTT-CTGAT--TAAAAT-GTGTT--AAC-A--AAAACTTG-TGATAG-------CTAA-CAAAGGAATTTAACAGTT------AGA-ATGGTGTAAATATCAGGACTAT-CAAACTCAAGTAGCAT-GATTATAGAAAAAAAAA-----ACATTTAAAATCAAGAGTT-GGTTCT---A---------GAT---CATTTCCATGCCA-TGTCCATTATACGGAGAGTATC-G----TACGTTTA--CAAAAAAA---------ACCAAACAAAAAAAACCAACAACCCGGAATCTC------ACAAG-AAA---ATCCTCCTCATCATAAAAAAG-AAATTGG-TC---TAATCCTATCA-TGGA--TAGTTCTAGGTCATC-TAAAAACAGTT---GGTCAA-TAA--GATTCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACTC-A---CTTTT-AA-CA-TTTA----AA-ACC-TA-CCTA-G-ACCA--GTTTAGGATTTACTCTAATTTCTGA-GATGAGCTTA--C--TCCTG-AGAAAA-ACA--GTGTGAAAC-AAGTTT-AT-AAATGTG-AGCGCTTCT-TA-CAGGTAAACCTGGTTTAAACAC-AG-TGTGAAATACGGCCAnnnnnnnnnnnnnnnnnnnnnnnnnaccggagtaaacctagtcaagtaaaccaggttaaatcccagttgagctagttcacataaacctcacctagtgtttcacactaagattaaaacttgttttacctgaactccagaatttgtttggttttttttcatttggtattaccaaatttcgagaaaaacggtcgaaaattccagaactctagagtgtaccccttattgatttagtggaacaaaaatgaatattatttatgacaaagcttctgattaaaatgtgttaacaaaaacttgtgatagctaacaaaggaatttaacagttagaatggtgtaaatatcaggactatcaaactcaagtagcatgattatagaaaaaaaaaacatttaaaatcaagagttggttctagatcatttccatgccatgtccattatacggagagtatcgtacgtttacaaaaaaaaccaaacaaaaaaaaccaacaacccggaatctcacaagaaaatcctcctcatcataaaaaagaaattggtctaatcctatcatggatagttctaggtcatctaaaaacagttggtcaataagattcagcctttctactccatctatgtggtcttttatagttagaataactcacttttaacatttaaaacctacctagaccagtttaggatttactctaatttctgagatgagcttactcctgagaaaaacagtgtgaaacaagtttataaatgtgagcgcttcttacaggtaaacctggtttaaacacagtgtgaaatacggcca
gi|10 : tacctgtgtcttaggtaagctagatttacgnnnnnnnnnnnnnnnnnnnnnnnnnacTTCACACCTGTG-CTTAG-TAAGC--AATATACG-AGTAAACG-AGTTA---CAAGTAAACCA-----TAAAT--CCAGT--GAG-C-GA--TTCACA-AAACCTCACCT-G-T-TTTCACACTATAAAATAAAACT-TG--TTACC--T-AACTCCAGAA-TTGG----GTT--GGTTTTTTTTTTCAT-T--GTA-TAC--AA-TGCTGCAGAAAAACGTCG---AAAA-----TTCTTAG
gi|11 : C---TAAT-ATATCA-CGGA--TAGTTCCAGGTCCTCC-GAAAACAGT-------CAA-GAA--TACCAAGCCTTTCTACTCCA-TCA-AT--GTGGTCTTCCATA--------A--G----------A---CCTTT-AA-CA-TTT-----AA-ACG-TGTCCTA-G-ACCA-AGATTA-GGGATACACTAATGTCTGA-GATGAGCTTT--C--TTCTG-AG--AA-GTAG-ATGTGAAAC-AGGTTT-ATAAAAGGTG-AATCCTTCT-TT-CAGGtgtgactcgtaagtgttacacggtagttt
gi|12 : TCCA-TCT-ACTGGTGGTCTTTTACATAGGTTGGA--G-AA-AACACTACTATCTTTTAA-CA-TTTTGAAGAACGCCATACCCTAAG-ACCA-GGGT----ATCTATC----------------GGTTTA--C--ACGGA-AG--AA-ACAGAGTGTGAAAC-A--TTT-ATAAA-TGTG-AGCCCTTCT-CA-CAGGAAGACCTGGTTTAAACATGGATTGTG--ATACG
gi|13 : ------ACACG-AAA---ATTGTCATCATCATAAAAAAG-AA------TC---CAAT-CTATCA-CAGA--TAATTCTAGGTCATCTTAAAAAGAGAT---GGTCCA-TAA--GACCCAGCCTTTCTATTCTA-TCT-AT--TTGGTATTCCATA---GTT--G--G-AATAACACCA---CCTTT-AA-TA-T
gi|14 : TTCACACGTGTGTTTTAGGTAAGCTAGATTTATGGAGAATGCCTAGTT----CAGGTAAACCG-GGTTTAAAT--CCCATTTGAGCCCGAGGTTC-CATAAACCTCACTT-GTTGTTTCACAC
gi|15 : AGCTTA--C--TCCTG-AG--AA-ACAG-GTGTGAAAC-AAGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACAGG-TGTG-AATACGGCCAT
gi|16 : GGTATTAC--AATGGCTGGAAAGAAATGTCC---AAAT-----GTTACAG--AA-CTAG---AAAAG---A--------------TTAGTG---GGGTC-AAAAAGGAATTATA-TTGAAAA--CAAAGC-A-CTaa
gi|17 : AAA-----TTTCCA-A-AA-CTAG---AAAAGTGTACCC-TTGTT--GATTTAGTT---GGAAC-TAAAAGGAATATTA-TTTATGA--CAAAGCTA-CTG
gi|18 : GCCCTTCT-TA-CAGGTAAACCTGGTTTAAATACAGG-TGTG-AATACGGCCAT
gi|19 : AT-CATTATAG-----AAAAAAAAAACTTTTAAAATCAAGAGTT-GGTTCaa
gi|2 : TTCACACCTGTGGCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACACT-TAAAATAAAACT-GGTTTTACC--TGAACTCCAG-A-TTTG----TTT--GG--GTTTTTT-CAT-TTGGTATTAC--AATTTCTGAGAAAAAAAGTCG---AAAA-----TATCCATATAA-CTAGTTAGAAAGTGTACCC-TTGGT--GATTTAGAT---GGAAC-AAAAATGAATAGTA-TTGATGA--CAAAGCTA-CTGAT--TAAAAT-G-GCT--AGCAAG-AAAAAATG-TAATAGGAAAAC-CTAG-CTAAGGAAT-----AG-T------AGAAATGGTACAATTACCAGGAC-TT-C-AACTCGAGTAACAT-CATTATAG-----GAAA-----ACTTTTAAAATCAAGAGTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATAAGGAGAGAATT------CACGTTTA--CAAAAAAC----------------------------------GAAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAACG-AAATTGG-TT---TAAT-CTATCA-TGGA--TAGGTCTGGGTCCTCTTAAAAACAGTT---GGTCAA-TAA--GATTCAGCTTTTCTACTCCT-TCT-AT--GTTGTCTTTTATA---GTA--A--G-AATAATAC-A---TCTTT-AA-CA-TTT-----AA-ACC-TACTCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTCA--C--TCCTG-AG--AA-TCAG-GTGTGAAAC-AGATTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTAGTTTAAACATAGG-TGTG-AATACGGCCAT
gi|20 : a-TA-CAGGTAAACCTGGTTTAAACATAGG-TGTT-AATATGGCCAT
gi|3 : TTGTTTCAT-TTGGTATTAC--AATTTCTGAGCAAAAAGGTCG---AAAA-----TTTCCAGA-A--CTGG---AAAAGAATACCC-TTATT--GATTTAATT---GGAGG-AAAAATGAATATTA-TTTATGA--CAAAGCTA-ATGAT--TAAAAT-G--TT--AACAA--AAA--TTG-TAATGGGAAAAC-CTAG-CAAAGGAATTTAACAG-T--------------------TATCTGGAC-AT-C-AACTCAAGTAACAT-CATTATAG-----AAAA-----ACTTTAAAAATCAAGATTT-TGTTCT---A---------AAT---CATTTCCAAG-CA-TGTCCATTTTATGGAGAGTAT-------CACGTTTA--C-AATAAA---------A------------------------GGAATCTCACAATGACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TCCAGTAAT-CTATCA-TGG-----NNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNN-NNN--GATTCAGCCT---TACTCCA-TCT-AT--GTGGTCTTTTATA---GTG--A--G-AATAACACTA---TCTTT--A-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GGTTTAC--------------AC---------------TG-AG--AA-ACAG-GTGTGAAAC-AAGTTTAATAAAATGTG-AG-CCTTCTCCA-CAGG----------CTAAACATGGG-TGTG-AATACGG
gi|4 : cAAAATCAAGATTTTGGTTCTTAAA---------GATAATCATTTCCAAG-CAATGTTCATTACACGACGAGAAACTGTTATCAAGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACGAAAA---ATCCTCATCATCATAAAAAAGTAAATTGT-TC----AAT-C-GTCATTGGAACTAGTTCTAGGTCATCATAAAAG-AGTTTGAGTTTAAGTAAGGGGTGCAGCCTTTCTACTTCATTCT-AT--TTGGTCTTTTATAG--GTT--AAGA-AATAACACTA---TCTTT-AATCATTTT-----AA-ACC-TACCCTA-G-ACCATGGTTTA-GATTTAGCCTAATTTCTGA-GAAGAGCTTG--CCTTCTTGTAG--AAGGCA--GTGTGAAACGAGGTT---TAAAATGTGAAGCGCTTCT-TAGCAGGTAAATCC--TTTTAACAAGGG-TGTG-AA
gi|5 : taaAAGGGAATTAACCA-TTGAGGAAGAGGTGGTA-AATTATCAGGCG-ATTC-AACC--AGTAACATGTAT-ATAG-----AAAG-----G--TTTAAAATCAAGAATT-GGTTCT---AA--------GAT---CATTTCCATG-CA-T-TCAATT-TACGAAGAGGATC-G-----ACGTGTGAGCAAAAAAATATATGTGTA------------------------TAAGTCGT------AAA-G-AAGTAGGTCTTC-TCATC-TAAAAAAT-AAATTGGGTC---TAAT-CCATC--C--A--TGATTCTAGGGTATC-TAAAAA-AG-----GGT-AA-TAA--GATT--GCCTT-CTAC------CTGAT--G-GGTCTTTTAGA---GTT--A--GAAATAACACTA-----TGT-AA-CA-TTT------A-ACG-TG-CCTA-GAACCA-GGTTAT-GATTTACGCTAA-TACTGAGGATAATCGTATGC--ACCTG-AG--GA-
gi|6 : aaaaagTTTTAAAATCAAGATTT-GGTTCT---ATTAAAGATAGAT---CATTTCCAAG-CA-TGTTCATTACACGGAGAGAACT-GGTATCAAGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGT-TC---TAAT-CGATCA-TGGA--TAGTTCTAGGTCATCATAAAAG-AGTT---GGTCAA-TAA--GGTGCAGCCTTTCTACTTCA-TCT-AT--TTGGTCTTTTATA---GTT--A--G-AATAACAC-----TCTTT-AA-CATTTT-----AA-ACC-TACCCTA-G-ACCA-GGTTT--GATTTAGCCTAATTTCTGA-GATGAGCTTG--C--TCTTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAA
gi|7 : TTCACACCTGTGTCT-AGGTA-GC-AGATTTACAGAGTAAGCCTAGCTTTGTCAAATAAACCAAGGTTTAAATATCCCATTTGAG-CTGA-GTGCACATAAACCTCACC--G-TTGTTCACACTAAAAAATAAAAC--TGGTTTACCTTTGAACTCCAG-A--TTG----TTTGCGG--TTTTTTTTTAT-TT-GTATAACA-AATTTCTGAGAAAAAAGGTCG---AAAAAAACTTTCCCAAA-AA-CTAG---AAAAGTGTACCT-ATGATTAGATTTAGTTTTAACAAC-AAAAATnnnnnnnnnnnnnnnnnnnnnnnnntatttcaca
gi|7 : gcccatatCTA--TGAT--TAGATTTA-GTTTTAACAAC-AAAAATTG-TAATGG--AAAC-CTAG-CTAAGAAAtgtaatggaaacctagctaagaaaata
gi|8 : gcccatatttcacacctgtgtctaggtagcagatttacagagtaagcctagctttgtcaaataaaccaaggtttaaatatcccatttgagctgagtgcacataaacctcaccgttgttcacactaaaaaataaaactggtttacctttgaactccagattgtttgcggtttttttttatttgtataacaaatttctgagaaaaaaggtcgaaaaaaactttcccaaaaactagaaaagtgtacTTGAGAT--TCC-TTTGAG-CTGA-GTTCACATACAC--TACCT-GCTGATTCACACT---CAATAAAACTCTGTTTTACC--TGAA--TCAG-A-TTTGGTTTTTT--TT--TTTTTTTTCATCTTGG--TTAC---ATTTCTGAGAAAAACGGTTGTGCAAAA-----TTTCCCCA-AT-CTA--------------CC-T---T--GATTTAGTT---GCGACAAAAAATGAAT-TTATTTTATGACCCAAGCCTACCTGAT--TAAAAT-T-GT--------------ACTGTTGATGGGAAAACACTAGCCTAAGGAATTTAA-AG-T-------GAAATGGTata
gi|9 : TTCTCAT-TTGGTATTAC--ATTGGCTGAG----AAG------------------------------------AAAGTGTACCC-TTACT--GATTTAGTC---GGGTC-AAAAAAGGATGTAA-TTGAAAG--CAAAGGCA-CTAATGCCAAAAT-G-ATT--AACAAGAAAAAATTG-GAATGGGAAGAC-TTTG-CTAAGGAATTTAACAG-T------AGAGATGGTTCAAATACCAAGAT-AT-C---CTC------------TT------------A-----GCT----AAAT----ATTT-GGTTCT---A---------GAT---CATTTCCAAG-CG-TGCCCATTATACGGAGAGTATgta
blockSeqs : T T TTTGT A T AT G C C G . T G AT TC T TT A T GTTT GGTT C A G TGC AAACT C TATAA TTA T ATGATTA TTTA A T T G CC C GC TAGTTTT A GA A T G A C C . TGAGGAA A AC T . T A G GT . AAAAA G T ATTAAAGATA AAT . A A A CTGTTATC AG TATATGTGTA ACAATG A TAG A T GG CAG . T T AC C C TTTGA G GG T G TG TAG GG AG A TACTAT T T T TGAAG C A T A A T TA A TGT G TG TG CT T . GG GA G G A A C G G TG T .
blockSeqs : G T TA . T . A . C . . C G AA T G . . T . GCGG . . A . . T AAAA . T TTGTT G . A . T . . . GGCT A G A . G . . C . A G TC T . . A A C . . G . TAAA . . . T T TGGTATC . A . . . A . G . . T . . T G AT . . . . . G . . . CAC . . T . . . C . . . TA C TTT . CG . . . . G G . A . . . . G CA . .
blockSeqs : T . T . T . A . T . . . T T T T . . T . GG . . A . . T CAAT . A TTGGT T . A . G . . . GATT A C A . G . . C . A A A A . . A . C . . T . AA . . . A A TC . A . . . A . G . . T . . T C TT . . . . . . . . . TAT . . . . . . C . . . TA C TTT . AG . . . . A G . G . . . . G CA . .
blockSeqs : . . T . T . A . T . . . G . . . . . . . TT . . C . . T GAA . T TTATT T . A . T . . . GTT A . . . G . . . . . G . . . . . . C . . T . A . . . A G CG . A . . . A . T . . T . . N N NN . . . . . . . . . TAT . . . . . . C . . . TA C TTT . TA . . . . A G . A . . . . A TA . .
blockSeqs : G . . . . . . . . . . A . . T AAA . T TTACT T . G . T . . . TGT . . . . . . . . . . . . . . A . A . . . A A C . . . . . A . T . . C . . A . TT . . . . . . . . . AC . . . . . . C . . . AT G TA . TG . . . . T G . G . . . . G TA . .
blockSeqs : . . A . . C GAA . . TT T . . . G . . T . A . . . . T . . . . . . . . G . . A . T . . . . . . . . . AT . . . . . . C . . . T C . . C . . . . A G . G . . . . . TG . .
blockSeqs : . . . . T . . . . C . . T . . . . . . . . . . . . . . . . . . TA . . . . . . . . . . . . . . . . . . . G . . . . . . . AG . .
blockSeqs : . . . . . . . . . T . . . . . . . . .
blockSeqCons : T**** ** T* ** GAA*** TTGTT*** T*** NGTT**** ** A****** A* ***** TGC***** A********************************* TAT*** ***** TA* ** G* CG
originalCons : NTTCACACCTGTGTCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACACTATAAAATAAAACT-TGTTTTACC--TGAACTCCAG-A-TTTG----TTT--GG--TTTTTTTTCAT-TTGGTATTAC--AATTTCTGAGAAAAAAGGTCG---AAAA-----TTTCCAGA-AA-CTAG---AAAAGTGTACCC-TTGNT--GATTTAGTT---GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTA-CTGAT--TAAAAT-G-GTT--AACAA--AAAAATTG-TAATGGGAAAAC-CTAG-CTAAGGAATTTAACAG-T------AGAGATGGTACAANTATCAGGAC-AT-C-AACTCGAGTAACAT-CATTATAG-----AAAA-----ACTTTTAAAATCAAGANTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATACGGAGAGNATC-G----CACGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TC---TAAT-CTATCA-CGGA--TAGTTCTAGGTCATCNTAAAAACAGTT---GGTCAA-TAA--GATTCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACACTA---TCTTT-AA-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTTA--C--TCCTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACGGG-TGTG-AATACGGCCAT
finalCons : NTTCACACCTGTGTCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACACT--AAAATAAAACT-TGTTTTACC--TGAACTCCAG-AT-TTG----TTT--GG--TTTTTTTTCAT-TTGGTATTAC--AATTTCTGAGAAAAAAGGTCG---AAAA-----TTTCCAGAA---CTAG---AAAAGTGTACCCTTGTT---GATTTAGTT---GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTA-CTGAT--TAAAATNGTT----AACAA--AAAAATTG-TAATGGGAAAAC-CTAG-CTAAGGAATTTAACAG-TA------GAGATGGTACAANTATCAGGAC-AT-CA-ACTCGAGTAACAT-CATTATAG-----AAAA-----ACTTTTAAAATCAAGANTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATACGGAGAGNATTGC-----ACGTTTA--CAAAAAAAA---------------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TC---TAAT-CTATCA-CGGA--TAGTTCTAGGTCATCNTAAAAACAGTT---GGTCAA-TAA--GATTCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACACTAT---CTTT-AA-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTTA--C--TCCTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACGGG-TGTG-AATACGGCCAT
Alignments
lowQualScore : 1 22222 1 22222 11 1111 11 11 11111 11 1111 222222 22 2222222 11 1 11111 11111 2222222222222 111 333333333 8888888888888888888888888888888888 111111 111 1 1 11111 111 111111 11111
lowQualScore : 5 0 0 0 0 55555 8 3 99 1 6 6 6 6 3 2 6 22222 8 88 0 11 8 88 7777 11 0 99 5 11 2 888 11111 22 1 66 3333 0 5 11 77 5 0 888 5 0 3 5 1 77 5 99 111111 3 22 3 6 6 6 6 2 6 6666666 7 22 3 8 8 88 1 77 66666 66666 1 5 9999999999999 000 5 5 1 1 777777777 99 7 5555555555555555555555555555555555 666666 0 5 000 1 5 66 888 5 2 5 66 0 3 11111 5 66 0 0 4 4 66 222 66 66 4 444444 4 4 8 77777 5 5 4 5 5 5 888 4 333 5 55 66 66 4 66 55 77 5 2 5 5 4 4 0 1 55 5 5
lowQualScore : . . . . . ..... . . .. . . . . . . . . ..... . .. . .. . .. .... .. . .. . .. . ... ..... .. . .. .... . . .. .. . . ... . . . . . .. . .. ...... . .. . . . . . . . ....... . .. . . . .. . .. ..... ..... . . ............. ... . . . . ......... .. . .................................. ...... . . ... . . .. ... . . . .. . . ..... . .. . . . . .. ... .. .. . ...... . . . ..... . . . . . . ... . ... . .. .. .. . .. .. .. . . . . . . . . .. . .
lowQualScore : 6 8 8 6 8 88888 0 2 22 7 7 3 7 7 3 5 7 88888 0 88 8 00 0 88 0000 00 8 22 7 99 0 888 22222 22 9 99 8888 4 0 66 22 0 4 888 0 2 9 7 3 99 0 22 222222 2 55 2 7 7 7 7 5 7 5555555 8 22 8 0 0 88 4 77 77777 77777 0 0 6666666666666 000 7 7 7 0 000000000 22 3 8888888888888888888888888888888888 444444 7 7 000 4 7 44 888 0 0 0 99 8 2 88888 0 99 8 1 4 4 11 222 11 11 4 666666 4 4 9 55555 0 0 5 0 0 0 888 5 444 0 66 11 11 4 11 66 55 0 2 0 7 4 4 4 4 44 0 0
consensus : NTTCACACCTGTGTCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACAC-T--A--AAA-TAAAACT-TGTTTTACC--TGAACTCCAG-A-TTTG----TTT--GGTTT--TTTTTCAT-TTGGTATTAC--AATTTCTGAGAAAAAAGGTCG---AAAA----TTTCC--AGAA--CTAG---AAAAGTGTA-CCCTTG-TT-GATTTAGTT---GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTA-CTGAT--TAAAAT-TG---TTAACAA--AAAAATTG-TAATGGGAAAAC-CTAG-CTAAGGAATTTAACAG-T------AGAGATGGTACAANTATCAGGAC-AT-C-AACTCGAGTAACAT-CATTATAG-----AAAA-----ACTTTTAAAATCAAGANTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATACGGAGAGNA-TCG----CACGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TC---TAAT-CTATCA-CGGA--TAGTTCTAGGTCATCNTAAAAACAGTT---GGTCAA-TAA--GATTCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACACTA---TCTTT-AA-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTTA--C--TCCTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACGGG-TGTG-AATACGGCCAT
Reference ( family-2548 ) : NTTCACACCTGTGTCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACAC-T--A--AAA-TAAAACT-TGTTTTACC--TGAACTCCAG-A-TTTG----TTT--GGTTT--TTTTTCAT-TTGGTATTAC--AATTTCTGAGAAAAAAGGTCG---AAAA----TTTCC--AGAA--CTAG---AAAAGTGTA-CCCTTG-TT-GATTTAGTT---GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTA-CTGAT--TAAAAT-NG---TTAACAA--AAAAATTG-TAATGGGAAAAC-CTAG-CTAAGGAATTTAACAG-T------AGAGATGGTACAANTATCAGGAC-AT-C-AACTCGAGTAACAT-CATTATAG-----AAAA-----ACTTTTAAAATCAAGANTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATACGGAGAGNA-TTG----CACGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TC---TAAT-CTATCA-CGGA--TAGTTCTAGGTCATCNTAAAAACAGTT---GGTCAA-TAA--GATTCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACACTA---TCTTT-AA-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTTA--C--TCCTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACGGG-TGTG-AATACGGCCAT
gi|1 : ACCTGTGTCTTAGGTAAGCTAGATTTACG
gi|1 : tCGGAGTAAACCTAGT-----CAAGTAAACCA-GG-TTAAAT--CCCAGTTGAG-CT-A-GTTCACATAAACCTCACCTAG-TGTTTCACAC-T--A--AGATTAAAACT-TGTTTTACC--TGAACTCCAGAA-TTTG----TTT--GGTTT--TTTTTCAT-TTGGTATTACCAAATTTC-GAGAAAAACGGTCG---AAAA-----TTCC--AGAACTCTAG------AGTGTACCCCTTA-TT-GATTTAG-T---GGAAC-AAAAATGAATATTA-TTTATGA--CAAAGCTT-CTGAT--TAAAATGTG---TTAAC-A--AAAACTTG-TGATAG-------CTAA-CAAAGGAATTTAACAGTT------AGA-ATGGTGTAAATATCAGGACTAT-CAAACTCAAGTAGCAT-GATTATAGAAAAAAAAA-----ACATTTAAAATCAAGAGTT-GGTTCT---A---------GAT---CATTTCCATGCCA-TGTCCATTATACGGAGAGTA-TCG----TACGTTTA--CAAAAAAA---------ACCAAACAAAAAAAACCAACAACCCGGAATCTC------ACAAG-AAA---ATCCTCCTCATCATAAAAAAG-AAATTGG-TC---TAATCCTATCA-TGGA--TAGTTCTAGGTCATC-TAAAAACAGTT---GGTCAA-TAA--GATTCAGCCTTTCTACTCCA-TCT-AT--GTGGTCTTTTATA---GTT--A--G-AATAACTC-A---CTTTT-AA-CA-TTTA----AA-ACC-TA-CCTA-G-ACCA--GTTTAGGATTTACTCTAATTTCTGA-GATGAGCTTA--C--TCCTG-AGAAAA-ACA--GTGTGAAAC-AAGTTT-AT-AAATGTG-AGCGCTTCT-TA-CAGGTAAACCTGGTTTAAACAC-AG-TGTGAAATACGGCCAnnnnnnnnnnnnnnnnnnnnnnnnnaccggagtaaacctagtcaagtaaaccaggttaaatcccagttgagctagttcacataaacctcacctagtgtttcacactaagattaaaacttgttttacctgaactccagaatttgtttggttttttttcatttggtattaccaaatttcgagaaaaacggtcgaaaattccagaactctagagtgtaccccttattgatttagtggaacaaaaatgaatattatttatgacaaagcttctgattaaaatgtgttaacaaaaacttgtgatagctaacaaaggaatttaacagttagaatggtgtaaatatcaggactatcaaactcaagtagcatgattatagaaaaaaaaaacatttaaaatcaagagttggttctagatcatttccatgccatgtccattatacggagagtatcgtacgtttacaaaaaaaaccaaacaaaaaaaaccaacaacccggaatctcacaagaaaatcctcctcatcataaaaaagaaattggtctaatcctatcatggatagttctaggtcatctaaaaacagttggtcaataagattcagcctttctactccatctatgtggtcttttatagttagaataactcacttttaacatttaaaacctacctagaccagtttaggatttactctaatttctgagatgagcttactcctgagaaaaacagtgtgaaacaagtttataaatgtgagcgcttcttacaggtaaacctggtttaaacacagtgtgaaatacggcca
gi|10 : tacctgtgtcttaggtaagctagatttacgnnnnnnnnnnnnnnnnnnnnnnnnnacTTCACACCTGTG-CTTAG-TAAGC--AATATACG-AGTAAACG-AGTTA---CAAGTAAACCA-----TAAAT--CCAGT--GAG-C-GA--TTCACA-AAACCTCACCT-G-T-TTTCACAC-T--ATAAAA-TAAAACT-TGTT--ACC--T-AACTCCAG-AATTGG----GTT--GGTTTTTTTTTTCAT-T--GTA-TAC--AA-TGCTGCAGAAAAACGTCG---AAAA----TTCTT--AG
gi|11 : C---TAAT-ATATCA-CGGA--TAGTTCCAGGTCCTCC-GAAAACAGT-------CAA-GAA--TACCAAGCCTTTCTACTCCA-TCA-AT--GTGGTCTTCCATA--------A--G----------A---CCTTT-AA-CA-TTT-----AA-ACG-TGTCCTA-G-ACCA-AGATTA-GGGATACACTAATGTCTGA-GATGAGCTTT--C--TTCTG-AG--AA-GTAG-ATGTGAAAC-AGGTTT-ATAAAAGGTG-AATCCTTCT-TT-CAGGtgtgactcgtaagtgttacacggtagttt
gi|12 : TCCA-TCT-ACTGGTGGTCTTTTACATAGGTTGGA--G-AA-AACACTACTATCTTTTAA-CA-TTTTGAAGAACGCCATACCCTAAG-ACCA-GGGT----ATCTATC----------------GGTTTA--C--ACGGA-AG--AA-ACAGAGTGTGAAAC-A--TTT-ATAAA-TGTG-AGCCCTTCT-CA-CAGGAAGACCTGGTTTAAACATGGATTGTG--ATACG
gi|13 : ------ACACG-AAA---ATTGTCATCATCATAAAAAAG-AA------TC---CAAT-CTATCA-CAGA--TAATTCTAGGTCATCTTAAAAAGAGAT---GGTCCA-TAA--GACCCAGCCTTTCTATTCTA-TCT-AT--TTGGTATTCCATA---GTT--G--G-AATAACACCA---CCTTT-AA-TA-T
gi|14 : TTCACACGTGTGTTTTAGGTAAGCTAGATTTATGGAGAATGCCTAGTT----CAGGTAAACCG-GGTTTAAAT--CCCATTTGAGCCCGAGGTTC-CATAAACCTCACTT-GTTGTTTCACAC-
gi|15 : AGCTTA--C--TCCTG-AG--AA-ACAG-GTGTGAAAC-AAGTTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTGGTTTAAACACAGG-TGTG-AATACGGCCAT
gi|16 : GGTATTAC--AATGGCTGGAAAGAAATGTCC---AAAT----GTTAC--AGAA--CTAG---AAAAG---A--------------TTAGTG---GGGTC-AAAAAGGAATTATA-TTGAAAA--CAAAGC-A-CTaa
gi|17 : AAA----TTTCC--AAAA--CTAG---AAAAGTGTA-CCCTTG-TT-GATTTAGTT---GGAAC-TAAAAGGAATATTA-TTTATGA--CAAAGCTA-CTG
gi|18 : GCCCTTCT-TA-CAGGTAAACCTGGTTTAAATACAGG-TGTG-AATACGGCCAT
gi|19 : AT-CATTATAG-----AAAAAAAAAACTTTTAAAATCAAGAGTT-GGTTCaa
gi|2 : TTCACACCTGTGGCTTAGGTAAGCTAGATTTACGGAGTAAACCTAGTT----CAAGTAAACCA-GGTTTAAAT--CCCATTTGAG-CCGA-GTTCACATAAACCTCACCT-G-TGTTTCACACTT--A--AAA-TAAAACT-GGTTTTACC--TGAACTCCAG-A-TTTG----TTT--GG-GT--TTTTTCAT-TTGGTATTAC--AATTTCTGAGAAAAAAAGTCG---AAAA----TATCCATATAA--CTAGTTAGAAAGTGTA-CCCTTG-GT-GATTTAGAT---GGAAC-AAAAATGAATAGTA-TTGATGA--CAAAGCTA-CTGAT--TAAAAT-GG---CTAGCAAG-AAAAAATG-TAATAGGAAAAC-CTAG-CTAAGGAAT-----AG-T------AGAAATGGTACAATTACCAGGAC-TT-C-AACTCGAGTAACAT-CATTATAG-----GAAA-----ACTTTTAAAATCAAGAGTT-GGTTCT---A---------GAT---CATTTCCAAG-CA-TGTCCATTATAAGGAGAGAA-TT-----CACGTTTA--C-AAAAAA---------C------------------------GAAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAACG-AAATTGG-TT---TAAT-CTATCA-TGGA--TAGGTCTGGGTCCTCTTAAAAACAGTT---GGTCAA-TAA--GATTCAGCTTTTCTACTCCT-TCT-AT--GTTGTCTTTTATA---GTA--A--G-AATAATAC-A---TCTTT-AA-CA-TTT-----AA-ACC-TACTCTA-G-ACCA-GGTTTA-GATTTACCCTAATTTCTGA-GACGAGCTCA--C--TCCTG-AG--AA-TCAG-GTGTGAAAC-AGATTT-ATAAAATGTG-AGCCCTTCT-TA-CAGGTAAACCTAGTTTAAACATAGG-TGTG-AATACGGCCAT
gi|20 : a-TA-CAGGTAAACCTGGTTTAAACATAGG-TGTT-AATATGGCCAT
gi|3 : T--TGTTTCAT-TTGGTATTAC--AATTTCTGAGCAAAAAGGTCG---AAAA----TTTCC--AGAA--CTGG---AAAAGAATA-CCCTTA-TT-GATTTAATT---GGAGG-AAAAATGAATATTA-TTTATGA--CAAAGCTA-ATGAT--TAAAAT--G---TTAACAA--AAA--TTG-TAATGGGAAAAC-CTAG-CAAAGGAATTTAACAG-T--------------------TATCTGGAC-AT-C-AACTCAAGTAACAT-CATTATAG-----AAAA-----ACTTTAAAAATCAAGATTT-TGTTCT---A---------AAT---CATTTCCAAG-CA-TGTCCATTTTATGGAGAGTA-T------CACGTTTA--C-AATAAA---------A------------------------GGAATCTCACAATGACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGG-TCCAGTAAT-CTATCA-TGG-----NNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNN-NNN--GATTCAGCCT---TACTCCA-TCT-AT--GTGGTCTTTTATA---GTG--A--G-AATAACACTA---TCTTT--A-CA-TTT-----AA-ACC-TACCCTA-G-ACCA-GGTTTA-GGTTTAC--------------AC---------------TG-AG--AA-ACAG-GTGTGAAAC-AAGTTTAATAAAATGTG-AG-CCTTCTCCA-CAGG----------CTAAACATGGG-TGTG-AATACGG
gi|4 : cAAAATCAAGATTTTGGTTCTTAAA---------GATAATCATTTCCAAG-CAATGTTCATTACACGACGAGAAACTGTTATCAAGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACGAAAA---ATCCTCATCATCATAAAAAAGTAAATTGT-TC----AAT-C-GTCATTGGAACTAGTTCTAGGTCATCATAAAAG-AGTTTGAGTTTAAGTAAGGGGTGCAGCCTTTCTACTTCATTCT-AT--TTGGTCTTTTATAG--GTT--AAGA-AATAACACTA---TCTTT-AATCATTTT-----AA-ACC-TACCCTA-G-ACCATGGTTTA-GATTTAGCCTAATTTCTGA-GAAGAGCTTG--CCTTCTTGTAG--AAGGCA--GTGTGAAACGAGGTT---TAAAATGTGAAGCGCTTCT-TAGCAGGTAAATCC--TTTTAACAAGGG-TGTG-AA
gi|5 : taaAAGGGAATTAACCA-TTGAGGAAGAGGTGGTA-AATTATCAGGCG-ATTC-AACC--AGTAACATGTAT-ATAG-----AAAG-----G--TTTAAAATCAAGAATT-GGTTCT---AA--------GAT---CATTTCCATG-CA-T-TCAATT-TACGAAGAGGA-TCG-----ACGTGTGAGCAAAAAAATATATGTGTA------------------------TAAGTCGT------AAA-G-AAGTAGGTCTTC-TCATC-TAAAAAAT-AAATTGGGTC---TAAT-CCATC--C--A--TGATTCTAGGGTATC-TAAAAA-AG-----GGT-AA-TAA--GATT--GCCTT-CTAC------CTGAT--G-GGTCTTTTAGA---GTT--A--GAAATAACACTA-----TGT-AA-CA-TTT------A-ACG-TG-CCTA-GAACCA-GGTTAT-GATTTACGCTAA-TACTGAGGATAATCGTATGC--ACCTG-AG--GA-
gi|6 : aaaaagTTTTAAAATCAAGATTT-GGTTCT---ATTAAAGATAGAT---CATTTCCAAG-CA-TGTTCATTACACGGAGAGAA-CTGGTATCAAGTTTA--CAAAAAAA---------A------------------------GGAATCTC------ACACG-AAA---ATCCTCATCATCATAAAAAAG-AAATTGT-TC---TAAT-CGATCA-TGGA--TAGTTCTAGGTCATCATAAAAG-AGTT---GGTCAA-TAA--GGTGCAGCCTTTCTACTTCA-TCT-AT--TTGGTCTTTTATA---GTT--A--G-AATAACAC-----TCTTT-AA-CATTTT-----AA-ACC-TACCCTA-G-ACCA-GGTTT--GATTTAGCCTAATTTCTGA-GATGAGCTTG--C--TCTTG-AG--AA-GCAG-GTGTGAAAC-AGGTTT-ATAAAA
gi|7 : TTCACACCTGTGTCT-AGGTA-GC-AGATTTACAGAGTAAGCCTAGCTTTGTCAAATAAACCAAGGTTTAAATATCCCATTTGAG-CTGA-GTGCACATAAACCTCACC--G-TTGTTCACAC-TAAA--AAA-TAAAAC--TGGTTTACCTTTGAACTCCAG-A--TTG----TTTGCGGTTT--TTTTTTAT-TT-GTATAACA-AATTTCTGAGAAAAAAGGTCG---AAAAAAACTTTCCCAAAAA--CTAG---AAAAGTGTA-CCTATGATTAGATTTAGTTTTAACAAC-AAAAATnnnnnnnnnnnnnnnnnnnnnnnnntatttcaca
gi|7 : gcccatatCTA--TGAT--TAGATT-TAGTTTTAACAAC-AAAAATTG-TAATGG--AAAC-CTAG-CTAAGAAAtgtaatggaaacctagctaagaaaata
gi|8 : gcccatatttcacacctgtgtctaggtagcagatttacagagtaagcctagctttgtcaaataaaccaaggtttaaatatcccatttgagctgagtgcacataaacctcaccgttgttcacactaaaaaataaaactggtttacctttgaactccagattgtttgcggtttttttttatttgtataacaaatttctgagaaaaaaggtcgaaaaaaactttcccaaaaactagaaaagtgtacTTGAGAT--TCC-TTTGAG-CTGA-GTTCACATACAC--TACCT-GCTGATTCACAC-T-----CAA-TAAAACTCTGTTTTACC--TGAA--TCAG-A-TTTGGTTTTTT--TTTTT--TTTTTCATCTTGG--TTAC---ATTTCTGAGAAAAACGGTTGTGCAAAA----TTTCC--CCAA--------------TCTA-CC-----TT-GATTTAGTT---GCGACAAAAAATGAAT-TTATTTTATGACCCAAGCCTACCTGAT--TAAAAT-TG---T------------ACTGTTGATGGGAAAACACTAGCCTAAGGAATTTAA-AG-T-------GAAATGGTata
gi|9 : TTCTCAT-TTGGTATTAC--ATTGGCTGAG----AAG------------------------------------AAAGTGTA-CCCTTA-CT-GATTTAGTC---GGGTC-AAAAAAGGATGTAA-TTGAAAG--CAAAGGCA-CTAATGCCAAAAT-GA---TTAACAAGAAAAAATTG-GAATGGGAAGAC-TTTG-CTAAGGAATTTAACAG-T------AGAGATGGTTCAAATACCAAGAT-AT-C---CTC------------TT------------A-----GCT----AAAT----ATTT-GGTTCT---A---------GAT---CATTTCCAAG-CG-TGCCCATTATACGGAGAGTA-Tgta