lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333 11111 111 1111111 222222222 1 111 111 111 1111 11 111111111 111 111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111 111111 44444444444 1 222222222 1111111 1 1111 111 1111111 44444444444444444444 4444444444444 11 222 22 111 333333 1111 1111 111111111 111111111111111 11 111 222222 11111 11
lowQualScore : 8 0 6 4444444444 1 66666 555 8888888 0 222222222 5 5 8 5 1 5 5 222 0 000 0 5 777 5 5 77 2222 00 99 5 888 5 222222222 444 222 4 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 66 5 4 44444 77 5 222222 5 22222222222 99999999 9 0 99 666666666 6 9999999 1 2222 888 8888888 44444444444444444444 1111111111111 00 5 6 1 6 5 1 77 6 7 444 2 55 5 00 5 333 1 444444 0000 5 4 5555 4 777777777 55 4 4 4 4 666 4 4 777 999999999999999 00 11 3 111 7777 111111 99999 3 1 00000 4 33 0
lowQualScore : . . . .......... . ..... ... ....... . ......... . . . . . . . ... . ... . . ... . . .. .... .. .. . ... . ......... ... ... . . ........................................................................................................................................................................ . .. . . ..... .. . ...... . ........... ........ . . .. ......... . ....... . .... ... ....... .................... ............. .. . . . . . . .. . . ... . .. . .. . ... . ...... .... . . .... . ......... .. . . . . ... . . ... ............... .. .. . ... .... ...... ..... . . ..... . .. .
lowQualScore : 0 8 7 0000000000 0 77777 777 6666666 1 999999999 7 7 3 7 3 7 7 999 1 000 1 7 999 7 7 99 4444 00 55 0 888 0 222222222 000 222 4 4 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 99 0 1 33333 99 7 666666 7 33333333333 33333333 9 7 22 777777777 7 7777777 4 1111 777 6666666 44444444444444444444 4444444444444 66 7 7 0 7 7 4 99 7 3 111 3 55 0 66 0 888 4 444444 1111 0 4 6666 4 666666666 55 0 0 0 0 777 0 1 000 666666666666666 00 11 6 444 7777 888888 11111 6 7 00000 0 00 2
consensus : ATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC---TAGA-------TTAAACACGCGTTCTAA---------AA-ATGC-GTTTTGAATGC-GTTTAAGATG-CGTG-TTTATTGTTCACATT--ACAAATACA---TCTGGTTAAA-CC---ATC-CAC-ACA--TA-A--CACGCATAGATTACG-CGA-TGAT---TAG-GG----A----AAGTAATACGAAAAT---AT-A-TGGCTCCGATCAGCCACG-ACA---------------T-------------GTACCTC-AATGTT-GAATCAC-TTG------C--A-------TT-GAC--TGTACA--T-AA--TAGTAAGTGTTTCGGCTGT----GT---------------G-AT-A--------------CGA-GA--TT-ATGATATTGAACTGA-----T--TGATTT-ATCAA--AAATGATT-TTTTTTT------ATCGATAGA--A-TTTTTTCTGCATGCAAATCCGCCGTATCAGAA--C---------TTTACAA-TTA----A-TTATCAT-GCA----GTTTCATTAT-TTTACA-------ATTG------A-------------GGATGTAAGC-------------GTATCCCC-AAAATT-G-TTTGCCTTCC-GCTAA-TTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTC-ACGCAT-ATGCATCGCGCG--TTCAATCCGCATATA-TCGTTC-GCATTCA-AACCACCG-----TATCTA--C-TG-GGTTTCAATG-C----GC-AT--------TGAC--CG-A-TC-A-CGTCTTGTA-TCCGGAT---TCAA-TC----TA------GATA--CGATTGTAA-TG---TGAA----CGATA------TATCT-----G-GATTAAAAGCGCGATT-----AA-TGCGTG-AAAAAAATGTAGTGTGAACACGGT
Reference ( gi|5 ) : ATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC---TAGA-------TTAAACACGCGTTCTAA---------AA-ATGC-GATTTGAATGC-GTTTAAGATG-CGTG-TTTATTGTTCACATT--ACAAATACA---TCTGGTTAAA-CC---ATC-CAC-ACA--TA-A--CACGCATAGATAACG-CGA-TGAT---TAG-GG----A----AAGTAATACGAAAAT---AT-A-TGGCTCCG-------------A---------------T-------------GTACCTC-AATGTT-GAATCAC-TTG------C--A-------TT-GAC--AGCGCA--T-AA--TAGTAA-----------------GT---------------G-AT-A--------------CGA-GA--TT-ATGATATTAAACTGA-----T--TGATTT-ATCAA--AAATGATT-TTTTTT-------ATCGACAGA--A-TTTTTACTGCATGCAAATCCGCTGTATCAGAA--C---------TTTACAA-TTA----A-CTATCAT-GCA----GTTTCATTAT-TGTACA-------ATTG------A-------------GGATGTAAGC-------------GTATCCCC-AAAATT-G-TTTACCTTCC-GCTAA-TTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTC-ACACAT-ACGCATCGCGTG--TTCAATCCGCATATA-TCG--C-GCATTCA-AACCACC------TATCTA--C-TG-GGTTTCAATG-C----GC-AT--------TGAC--CG-A-TC-A-CGTCTTGTA-TCCGGAT---TCAA-TC----TA------GATA--CAATTGTAA-TG---TGAA----CGATA------TATCT-----G-GATTAAAAGCGTGATT-----AA-TACGTG-AAAAAAATGTAGTGTGAACACGGT
gi|2 : ATACT-GTGTTCACACCTAACGCGC-ATT----------ATTAAATTCATC---TAGA-------TTAAACACGCGTTCTAA---------AA-ATGC-GTTTTGAATGC-GTTTACGATA-CGTG-TTTATTGTTCACATT--ACAAATACA---TCTGGTTAAA-CC---ATC-CAC-ACA--TATT--TACGCATAGATTACG-CGA-TGAT---TAG-GG----A----AAGTAA---GAAAATATAAT-A-TGGCTCCGATCAGCCACGTACA---------------T-------------GTACCTC-AATGTT-GAATCAC-TTG------CATA-------TT-GAC--TGTACA--T-AATTTAGTGAGCGTTTCAGCTGT----GT---------------G-AT-A--------------CGA-GA--TT-ATGATATTGAACTGA-----T--TGATTT-ATCAA--AAATGATT-TTTTTTTTTTTTGATCGATAGA--ATTTTTTTCTGCATGCAAATCCGCTGTATCAGAA--C---------TTCACAA-TTA----T-TTATCAT-GCA----GGTTCATTAT--------------------------------------GGATGTAAGC-------------GTATCCCC--AAATT-G-TTTGCCTTCC-GCTAA-TTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATACAGAC---------------T-ATGCATCGCGTG--TTCAATCCGCATATA-TCG--C-GCATTCA-AACCACCTACATGTATCTA--C-TG-GGTTTCAATG-C----GC-AT--------TGAC--CG-A-TC-A-CTTCTTGTA-TCTGGAT---TCAA-TC----TA------GATA--CGATTGTAA-TG---TGAA----CGATA------TATCT-----G-GATTAAAAGCGTGATT-----AA-TGCGTG--AAAAAATGTAGTGTGAACACGGT
gi|1 : ttATACT-GTGTTCACACCTAACGCGCCATT--------TTATCAA-----TC---TAGA-------TTAAACACGCGTTCTAA---------AA-ATGCCGATTTGA-TGCCGTTTAAGATG-CGTGGTTTATTGTTCACATTTTACAAAT-CA---TCTGGTTAAAACCTAGATC-CAC-ACA--TA-A--CACGCATAGATAACGGCGA-TGAT---T-G-GG----A----AAGTAATACGAAAAT---ATTA-TGGCTCCG-------------A---------------TT------------GTACCTC-AATGT--GAATCAC-TTG------C--A-------TTTGAC--AGCG-G--C-AA--TAGTAAT----------------GT---------------GGAT-A--------------CGA-GAATTT-ATGATATTAAACTGA-----T---GATTT-ATCAA--AAATGATTCTTTTTT-------ATCGACAGA--A-TTTTTACTGCATGCAAATCC--TGTATCAGAA--C---------TTTACAAATTA----A-CTATCATTGCA----GTTTCATTATGTGTACA-------ATTG------A-------------GGATGTAAGC-------------GTATCCCC-AAAATT-GATTTACCTTCCCGCTAAATTAATCGAGTCTTGGCAATAGATGC-AT--ACGAATCTGATCTAGATAAGAGGCAGATTGAACGTTC-ACACATAAAGCATCGCGTG--TTCAATCCGCATATACTCG--CGGCATTCAGAACCACCT-----TATCTA--C-TG-GGTTTCAATGAC----GCGAT--------GGAC--CC-ATTC-A-CGT-TTGTA-T-CGGAT---TCAATTC----TA------GAT---CAATTGTAA-TGTT-TGAA----CGATAT-----TATCT-----GCGATT-AAAGCGGGATT-----AATTAC-TGAAAAAAAATGTAG-G-GAACAC
gi|3 : caATACTTGTGTTCACACC-AACG-GC---T--------T-ATAAT-----TCA--TAGA-------TTAA-C-CGCGTTCTAA---------AA--TGC-G-TTTGAATGC-GTTTAC-ATGACGTG-TTTATT-TTC-CATT---CAAATACA---TCTGGTTA---CC---ATCGCA--ACA--TA-ATACACGCATAGTTA-C--CGA-TGAT----AT-GG----A------GTAA---GAAAATG--AT-A-TGGCTCCG-------------ACCAGCCAGTTCAATCT-------------GTACCTCTAATGTT-GAA--ATGTTG------C--A-------TT-GAT----TACA--T-AA--TAGTTA-----------------GTTGTTTCATGCTGTGAG-ATTA--------------CGATGA--TTTATGATATTGAACCGA-----TATTGATTT-ATCAA--A--TGATT-TTTTTTT------ATCGACATATAA-TTTTTTCTGCATGCAAATCCGCTGTATCAGAA--C---------TTTACAA-TTA----C-TTATCAT-GCA-----TTTCATTAT-TTTACATTGAGGGATTGTAAGGCG-------------GGATGTAAGC-------------GTATCCC---AAATT-G-TTTGCCTTCC-GCTAA-TTAATCGAGTCTGCGCAATAGATGTCAT--A-G-ATCTGATCTAGAT-AGATGCAT-TTGAACGTTC-ACAAAT-ATGCATCGCGTGTATTCAATCCGCATATA-TCG--C-GCATTCA-AACC-TC------TATCTA--C-TG-GGTTTCAATG-C----GC-AT--------TGAC--CG-A-TC-A-CGTCTTGTATTCCGGAT---TCAA-TC----TA------GATA--CGATTGTAA-TG---TGAA----CGATA-------ATCT-----G-GA-TAAAAGCGTGATT-----AA-TGCGTGAAAAAAAATGTAGTGTTAACACc
gi|6 : tATACT-GTGTTCACACCTAATGCGC-ATT--------T-ATCAA-----TC---TAGA-------TTAAACACGCGCTCTAATTTAGACTAAATATGC-ATTTTGAATGC-GTTTAAGATA-CGTA-TTTATTGTTCACATT--ACAAATACAACATTTGGTTAAA-CC---ATC-CAC-ACA--TA-A--CACGCATAGATTACA-CGA-TGATTTATAG-CG----A----AAGTAA---GAAAAT---AT-A-TGGCTCCGATCAGCCACGTACA---------------T-------------GTACCTC-AGTGTTAAAATCAC-TTGACTGTAC--AGAATCACTT-GAC--TGTACA--T-AA--TATTAAGTGTTTCGGCTGT----GT---------------G-AT-ACCTGGGGTGTGACACGA-GA--TT-ATGATATTGAACTGA-----T--TGATTT-ATCA-------------------------ATCGATAGA--A-TTTTTTCTGCATGCAAATCCGCCTAATCAGAA--C---------TTTACAA-TTA----A-TTATCAT-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGATGTAAGCCTGGGATGTAAGC-------------ATATCCCC-AAAATT-G-TTTACCTTCC-ATTAA-TTAATCGAGTCTGTGCAATAGATGCAAT--
gi|7 : taTACT-GTGTTCACACCTAACGCGC-ATTAAATATTTT-ATCAA-----TC---TAGA-------TTAAACACGTGTTCTAA---------AA-ATGC-GTTTTGAATGC-GTTTAAGATA-CGTG-TTTATTGTTCACATT--ACAAATACA---TCTGGTTAAA-CC---ATC-CAC-ACA--TA-A--CACGCATAGATTGCG-CGA-TGAT---TAG-GG----A----AAGTAATACAAAAAT---AT-A-TGGCTCCGATCAGCCATGTATA---------------T-------------GTATCTT-AATGTT-GAATCAC-TTG------C--A-------TT-GAC--TGCACA--T-AA--TAGTAAGTGTTTCGGCTGT----GT---------------G-AT-A--------------CGA-GA--TT-ATGATATTGAAtgta
gi|3 : AATGCGC-ATT--------G-A--AA-----CCCAGTAGATAGAGGTTTGAATGCGCGATAT--------------ATGC-GGATTGAATAC-A--CGCGATG-CATA-T---TTGTGAACGTT---CAAATGCA---TCTATCTAGA-TCAG-ATC-TATGACATCTA-T--TGCGCA-----GACT-CGATTAAT---TAGCGG----A----AGGCAAattatcaagcagtttcattatttacaattgaggatgtaagcccggaatgtaagcgtatccccaaaatttgtttgccttccgctaatgaattgagactgcacaatagatgcaatagaatctgatctagataagatgcagattgaacgttcacagg
gi|4 : tatacttgtgttcacaccaacggcttataattcatagattaaccgcgttctaaaatgcgtttgaatgcgtttacatgacgtgtttattttccattcaaatacatctggttaccatcgcaacataatacacgcatagttaccgatgatatggagtaagaaaatgatatggctccgaccagccagttcaatctgtacctctaatgttgaaatgttgcattgattacataatagttagttgtttcatgctgtgagattacgatgatttatgatattgaaccgatattgatttatcaaatgatttttttttatcgacatataattttttctgcatgcaaatccgctgtatcagaactttacaattacttatcatgcatttcattattttacattgagggattgtaaggcgggatgtaagcgtatcccaaattgt---TAGA-------TTAAACACGCGTTCTAA---------AA-ATGC-G-TTTGAATGC-GTTTAAGATA-CATG-TTTATTGTTCACATT--ACAAATACA---TCTGGTTAAA-CC---ATC-CAC-ACA--TA-C--AACACATAGATTGCT-CGA-TGAT---TAA-GGTTGGA----AAGTAATACGAAAAT---AT-A-TGGCTCCG-------------A---------------TCAGCCACGTACATGTACCTC-AATGTT-GAATCAC-TTG------C--A-------TT-GAC--TGTACA--T-AA--TAGTAATTAAGTGTTTCGGCTGTGT---------------G-GT-A--------------CGA-GA--TT-ATGATATTGAACTGA-----T--TGATTT-ATCAA--AAATGATT-TTTTTTT------ATCGATAGA--A-TTTTTTCTGCAAGCAAATCCGCTGTATCAGAA--C---------TTTACAA-TTA----A-TTATCAT-GCA----GTTTCATTAT-TTTACA-------ATTG------A-------------GGATGTAAGCCCG----------GGATCCCCCAGGATT-A----GCCTTCC-GCTAA-TTAATGGAGTCTGCGCAATAGATGCATTTTA-TAATCTGATCTAGATAAGATGCATATCGAACATTC-ACACAT-ATGCATCGCATG--TTCAATCCGCATATA-TCG--T-GCATTCA-AACTACC------TATCTA--C-TG-GGTTTCAATG-C----AC-AT--------GGAC--CG-A-TC-A-CGTCTTGTA-TCCGGAT---TCAA-TC----TA------GATA--CGATTGTAA-TG---TGAA----CGATA------TATCT-----G-GATTAAAAGCGTGATT-----AA-TGCGTG-AAAAAAATGTAGTGTGAACACAGgaccgatcacgtcttgtattccggattcaatctagatacgattgtaatgtgaacgataatctggataaaagcgtgattaatgcgtgaaaaaaaatgtagtgttaacac
gi|11 : t-A--CACGCATAGATTACG-CGA-TGAT---TAG-GG----ATTTCAAGTAATACAAAA--------A-TGGCTCCGATCAGCCACGCACA---------------T-------------GTGCTTC-AATGTT-GAATCAC-ATG------C--A-------TT-GAC--TGTACATTT-AA--TAGTA
gi|10 : GAAAAT---AT-A-TGGCTCCGATCAGCC------A---------------T-------------GTACCTC-A------CAATCAC-TTGACTCTAC--A-------CT-AATTAAGTGTT--TCGG--CGGT-------------------GT---------------G-AT-A--------------CGA-GG--TT-ATGATATTGAAATGATTGATT--TGATTT-ATCAATCGATTGATT-TT----------------------G-TTTTT-CTGCATACAAATCCGCCTCATCAGtaag
gi|8 : aAAAT---AA-AATGGCTCCG-------------A---------------TCAGCCAC------GTACCTC-A------CAATCAC-TTG---------A-------TC-TAC--A-C-----T-AA--T--TAAGTGTTTCGGCGGT----GT---------------G-AT-A--------------CGT-GA--TT-ATGATATTGAAATGA-----T--TGATTTGATT----AATTGATT-TT----------------------G-TTTTT-CTGCATGCAAATCCGCCTCATCAGGAGTCTATTTGCAGTCTACAA-TTATTTCATTTTTCATAGCGACATGTTTTATTAT-TTCACA-------ATTG------A-------------GGATGGCGGC-------------AAATCTCC-CAAATT-
gi|7 : gcaagA----A-TTATCAA-GCA----GTTTCATTAT-T-TACA-------ATTG------A-------------GGATGTAAGCCCGGAATGTAAGCGTATCCCC-AAAATTTG-TTTGCCTTCC-GCTAA-TGAATTGAGACTGCACAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTC-ACAttggtagcgttta
gi|15 : tactgtgttcacacctaacgcgcattaaatattttatcaatctagattaaacacgtgttctaaaaatgcgttttgaatgcgtttaagatacgtgtttattgttcacattacaaatacatctggttaaaccatccacacataacacgcatagattgcgcgatgattagggaaagtaatacaaaaatatatggctccgatcagccatgtatatgtatcttaatgttgaatcacttgcattgactgcacataatagtaagtgtttcggctgtgtgatacgagattatgatattgaTAA-TGAATTGAAACTGCG---TAGATGTAAT--A-AA--CAGATGTA-ATAAAATGCAGATTgg
gi|4 : ttccctttATGCGGATTGAACATGCGATGCAT-ATGTGT-GAATG--TTCGATATGCAT
gi|9 : ttagattaaacacgcgttctaaaaatgcgtttgaatgcgtttaagatacatgtttattgttcacattacaaatacatctggttaaaccatccacacatacaacacatagattgctcgatgattaaggttggaaagtaatacgaaaatatatggctccgatcagccacgtacatgtacctcaatgttgaatcacttgcattgactgtacataatagtaattaagtgtttcggctgtgtggtacgagattatgatattgaactgattgatttatcaaaaatgatttttttttatcgatagaattttttctgcaagcaaatccgctgtatcagaactttacaattaattatcatgcagtttcattattttacaattgaggatgtaagcccgggatcccccaggattagccttccgctaattaatggagtctgcgcaatagatgcattttataatctgatctagataagATGCGGATTGAACGTGCGATACAT-ATGTGT-GAACG--TTCAGTCCatatcgtgcattcaaactacctatctactgggtttcaatgcacatggaccgatcacgtcttgtatccggattcaatctagatacgattgtaatgtgaacgatatatctggattaaaagcgtgattaatgcgtgaaaaaaatgtagtgtgaacacag
gi|9 : acgaattgccctcgcaggaGACTGAACGTTC-ACACAT-ATGTATCGCACG--TTCAATCCGCATATA-TCG--C-GCATTCA-A-CCACC------TATCTA--C-TG-GGTTTCAATG-C----GC-AT--------TGAC--CTTA-TC-AACGTCATGCA-TCTGTAT---TCAA-TC----TACATGTAGATA--CGATTGTAA-TG---TGAA----TGATA------TATCT-----G-GATTAAAAGCGTGATT-----AA-TGCGTG-AAAAAAATGTAGTGTGAATACCGTatatcgcgcattcaaccacctatctactgggtttcaatgcgcattgaccttatcaacgtcatgcatctgtattcaatctacatgtagatacgattgtaatgtgaatgatatatctggattaaaagcgtgattaatgcgtgaaaaaaatgtagtgtgaataccgta
gi|2 : acgaattgccctcgcaggagTTC-ACGCATTA---ATCACGCT--TTTAATCCAGATATA-TCGTTC-ACATT----ACAATCG-----TATCTAGAT-TG-AATCCAGATA-CAA--GA-AG--------TGAT--CG-G-TC-A---------A-TGCGCAT---TGAA-ACCCAGTA------GATA--CA--TGTAGGTGGTTTGAATGCGCGATA------TATGC-----G-GATTGAACACGCGATa
gi|4 : ttatactgtgttcacacctaacgcgcattattaaattcatctagattaaacacgcgttctaaaaatgcgttttgaatgcgtttacgatacgtgtttattgttcacattacaaatacatctggttaaaccatccacacatatttacgcatagattacgcgatgattagggaaagtaagaaaatataatatggctccgatcagccacgtacatgtacctcaatgttgaatcacttgcatattgactgtacataatttagtgagcgtttcagctgtgtgatacgagattatgatattgaactgattgatttatcaaaaatgattttttttttttttgatcgatagaatttttttctgcatgcaaatccgctgtatcagaacttcacaattatttatcatgcaggttcattatggatgtaagcgtatccccaaattgtttgccttccgctaattaatcgagtctgcgcaatagatgcaatagaatctgatctagataagatacagactatgcTTC-ACGCATTA---ATCACGCT--TTTAATCCAGATATA-TCGTTC-ACATT----ACAATCG-----TATCTA--------GATTGAATC-C----GG-ATACAAGACGTGAT--CG-G-TCCA-TGT---GCA-TTGAAAC---CCAG-T------A------GATAGGTAGTTTGAA-TG---C--A----CGATA------TATGC-----G-GATTGAACATGCGATG-----CA-TATGTG-aaaatgtagtgtgaacacggt
gi|9 : ttagattaaacacgcgttctaaaaatgcgtttgaatgcgtttaagatacatgtttattgttcacattacaaatacatctggttaaaccatccacacatacaacacatagattgctcgatgattaaggttggaaagtaatacgaaaatatatggctccgatcagccacgtacatgtacctcaatgttgaatcacttgcattgactgtacataatagtaattaagtgtttcggctgtgtggtacgagattatgatattgaactgattgatttatcaaaaatgatttttttttatcgatagaattttttctgcaagcaaatccgctgtatcagaactttacaattaattatcatgcagtttcattattttacaattgaggatgtaagcccgggatcccccaggattagccttccgctaattaatggagtctgcgcaatagatgcattttataatctgatctagataagatgcatatcgaacattcaTTC-ACGCATTA---ATCACGCT--TTTAATCCAGATATA-TCATTC-ACATT----ACAATCG-----TATCTA--CATGTAGATTGAATA-CAGATGC-AT---------GACGTTG-A-TA-A-GGTCA---A-TGCGCAT---TGAA-ACCCAGTA------GATAGGTGGTTG-AA-TG---CG------CGATA------TATGC-----G-GATTGAACGTGCGATA-----CA-TATGTG-aaaaatgtagtgtgaacacag
gi|7 : acgaattgccctcgcaggaggactgaacgttcaTCATCG-C----GC-A-----------AT--CT-A-T--G-CGTGTTATG-TGTGGATGGTTTAA-CC-----A------GATG--TATTTGTAA-TG---TGAA----CAATAAACACGTATCTTAAACG-CATTCAAAACGC-ATTTTTAGAA-CACGTG-aaaaatgtagtgtgaataccgta
gi|12 : tactgtgttcacacctaacgcgcattaaatattttatcaatctagattaaa--------TGAC--CG-A-TC-A-CGTCTTGTA-TCCGGAT---TCAA-AA----TA------AATA--CGATTGTAA-TG---TGAA----CGATATAAT--TATCT-----G-GATTAAAAGCGTGATT-----AA-TGCGTG-AAAttagggaaagtaatacaaaaatatatggctccgatcagccatgtatatgtatcttaatgttgaatcacttgcattgactgcacataatagtaagtgtttcggctgtgtgatacgagattatgatattgaaattatcaagcagtttcattatttacaattgaggatgtaagcccggaatgtaagcgtatccccaaaatttgtttgccttccgctaatgaattgagactgcacaatagatgcaatagaatctgatctagataagatgcagattgaacgttcacagg
gi|14 : A--CGATTGTAA-TG---TGAA----TGATA------TATCT-----G-GATCAAAAGCGTGATT-----AA-TGCGTG---AAAAATGTAGTGTGAACACGGT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CAAATGCATGGCTCCATCAGCCACAAATCTCAACGATCACTCGACTCTGCATTAATTAAATGTTTCAATAGTGTGAT
Unaligned ( gi|16 ): GTTTTGATATTGAACTACTTGTTTGGATTTATCAATCGGTTGATTTTCTTTTTCT
Unaligned ( gi|17 ): CTTGAACTCTACACTAGAAGTGTTTCGGCAGCGTAATCGTGCGAGGTTGTGAT
Alignments
lowQualScore : 3333333333 11111 222222222 111 111 111111111 111 333333333 22222222222222222222 22222222222222 1111111 222222222 111111 1 1111 1111111 111111 2222222222222 2222222222222 5555 444444 111111 1111 11
lowQualScore : 6 6 0000000000 66666 5 222222222 5 5 5 5 5 5 77 000 5 000 5 7777 66 888 222222222 9 3 3 000 777777777 3 1 55 3 22222222222222222222 3 1 77 3 777 8888888 3 2 666 55555555555555 4 55 4 66 5 66666 6 00 4444444 66 888 5 77 222222222 5 222222 0 0000 0 77 6666666 444444 7777777777777 7777777777777 888 5 5 5 5 5 777 5 7 6 3 99 6 1111 6 000000 6 6 5 5 5 5 5 666666 66 5555 5 7 33
lowQualScore : . . .......... ..... . ......... . . . . . . .. ... . ... . .... .. ... ......... . . . ... ......... . . .. . .................... . . .. . ... ....... . . ... .............. . .. . .. . ..... . .. ....... .. ... . .. ......... . ...... . .... . .. ....... ...... ............. ............. ... . . . . . ... . . . . .. . .... . ...... . . . . . . . ...... .. .... . . ..
lowQualScore : 7 7 0000000000 77777 7 999999999 7 7 0 7 7 7 99 000 7 000 7 0000 44 888 222222222 4 6 6 000 555555555 6 3 66 6 33333333333333333333 3 8 99 3 888 6666666 6 3 444 00000000000000 0 55 0 99 0 66666 2 44 6666666 99 888 0 99 999999999 7 999999 0 6666 1 00 2222222 444444 5555555555555 5555555555555 888 0 0 7 7 0 000 7 5 7 3 22 7 8888 7 000000 7 7 7 7 7 7 7 444444 99 6666 0 1 22
consensus : ATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATGC-GTTTTGAATGC-GTTTAAGATG-CGTG-TTTATTGTTCACATT--ACAAATACA---TCTGGTTAAA-CC---ATC-CACACATAA--C-ACGCATAGATTACG-CGATGAT---TAGGG----A----AAGTAATACGAAAAT-AT-A---TGGCTCCGATCAGCCA---CGTACATGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--T-GA-CTGTACA--T-AAT--AGTAA----GT-GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCGTATCAGAA--C---------TTTACAA-TTA----A-TTATCAT-GCA----GTTTCATTATTT-TACA-------ATTG------AGGAT-------------GTAA-------------GC---GTAT-CCCCAAAATT-G-TTTGCCTTCC-GCTAA-TTAATCGAGTCTGCGCAATAGATGCA--ATA-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACACAT-ATGCATCGCGTG--TTCAATCCGCATATA-TCG--C-GCATTCA-AACCACC------TATCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAACACGGT
Reference ( family-2539 ) : ATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATGC-GTTTTGAATGC-GTTTAAGATG-CGTG-TTTATTGTTCACATT--ACAAATACA---TCTGGTTAAA-CC---ATC-CACACATAA--C-ACGCATAGATTACG-CGATGAT---TAGGG----A----AAGTAATACGAAAAT-AT-A---TGGCTCCGATCAGCCA---CG-ACATGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--T-GA-CTGTACA--T-AAT--AGTAA----GT-GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCGTATCAGAA--C---------TTTACAA-TTA----A-TTATCAT-GCA----GTTTCATTATTT-TACA-------ATTG------AGGAT-------------GTAA-------------GC---GTAT-CCCCAAAATT-G-TTTGCCTTCC-GCTAA-TTAATCGAGTCTGCGCAATAGATGCA--ATA-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACGCAT-ATGCATCGCGCG--TTCAATCCGCATATA-TCGTTC-GCATTCA-AACCACC-----GTATCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGCGATTAATGCGTG-AAAAAAATGTAGTGTGAACACGGT
gi|1 : ATACT-GTGTTCACACCTAACGCGCCATT--------TTATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATGCCGATTTGA-TGCCGTTTAAGATG-CGTGGTTTATTGTTCACATTTTACAAAT-CA---TCTGGTTAAAACCTAGATC-CACACATAA--C-ACGCATAGATAACGGCGATGAT---T-GGG----A----AAGTAATACGAAAAT-ATTA---TGGCTCCGAT---------------TGTACCTC-AATGT--GAATCAC-TTG------CA-------T--TTGA-CAGCG-G--C-AAT--AGTAA----------------TGTG-GA---T--------------ACGA-GAATTT-ATGATATTAAACTGAT---GATTT-ATCAAAAATGATTCTTTTTT------ATCGA--CAGAAT---TTTTA-CTGCATGCAAATCC--TGTATCAGAA--C---------TTTACAAATTA----A-CTATCATTGCA----GTTTCATTATGTGTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTAT-CCCCAAAATT-GATTTACCTTCCCGCTAAATTAATCGAGTCTTGGCAATAGATGC---ATACGAATCTGATCTAGATAAGAGGCAGATTGAACGTTCACACATAAAGCATCGCGTG--TTCAATCCGCATATACTCG--CGGCATTCAGAACCACC-----TTATCTACTGGGTTTCAATGACGCGATGGACCC-ATTCA-CGT-TTGTA-T-CGGATTCAATTCTA------GAT-CAATTGTAATGTTTGAACGATAT---TATCTGCGATT-AAAGCGGGATTAATTACTGAAAAAAAATGTAG-G-GAACAC
gi|10 : caGAAAAT-AT-A---TGGCTCCGATCAGCCA---------TGTACCTC-AC------AATCAC-TTG---------------------A-CTCTACAC-T-AAT----TAA----GT-GTTTCG-GCGGTGTGA---T--------------ACGA-GG--TT-ATGATATTGAAATGAT--TGATT----------TGA--TTTATCA------ATCGA--TTGATTTTGTTTTT-CTGCATACAAATCCGCCTCATCAGc
gi|11 : aA--C-ACGCATAGATTACG-CGATGAT---TAGGG----ATTTCAAGTAATACAAAA------A---TGGCTCCGATCAGCCA---CGCACATGTGCTTC-AATGTT-GAATCAC-ATG------CA-------T--T-GA-CTGTACATTT-AAT--AGTA
gi|12 : TGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-AATA------AATACGATTGTAATG--TGAACGATATAATTATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAtaag
gi|13 : AAAT-GC-A---TGGCTCC-ATCAGCCA---CA-A-----ATCTC-AACG-----ATCAC-TCG---------------------A-CTCTGCA--TTAAT----TAA----AT-GTTTCA-ATAGTGTGA---T--------------
gi|14 : cACGATTGTAATG--TGAATGATA----TATCTG-GATCAAAAGCGTGATTAATGCGTG---AAAAATGTAGTGTGAACACGGT
gi|15 : TAA-TGAATTGAAACTGCG---TAGATGTA--ATA-AA--CAGATGTA-ATAAAATGCAGATT
gi|17 : ttcccttt-------T--T-GAACTCTACA--C---T--AG-AA----GT-GTTTCG-GCAGCGTAATCGT--------------GCGA-GG--TT-GTGAT
gi|2 : cATACT-GTGTTCACACCTAACGCGC-ATT----------ATTAAATTCATC-TAGATTAAACACGCGTTCTAA---------AA-ATGC-GTTTTGAATGC-GTTTACGATA-CGTG-TTTATTGTTCACATT--ACAAATACA---TCTGGTTAAA-CC---ATC-CACACATAT--TTACGCATAGATTACG-CGATGAT---TAGGG----A----AAGTAA---GAAAAT-AT-AATATGGCTCCGATCAGCCA---CGTACATGTACCTC-AATGTT-GAATCAC-TTG------CA-------TATT-GA-CTGTACA--T-AATTTAGTGA----GC-GTTTCA-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTTTTTTTGATCGA--TAGAAT---TTTTTTCTGCATGCAAATCCGCTGTATCAGAA--C---------TTCACAA-TTA----T-TTATCAT-GCA----GGTTCATTAT-------------------------GGAT-------------GTAA-------------GC---GTAT-CCCCAAA-TT-G-TTTGCCTTCC-GCTAA-TTAATCGAGTCTGCGCAATAGATGCA--ATA-GAATCTGATCTAGATAAGATACAGACT---------------ATGCATCGCGTG--TTCAATCCGCATATA-TCG--C-GCATTCA-AACCACCTACATGTATCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CTTCTTGTA-TCTGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG--AAAAAATGTAGTGTGAACACGGT
gi|3 : ttATACTTGTGTTCACACC-AACG-GC---T--------T-ATAAT-----TCATAGATTAA-C-CGCGTTCTAA---------AA--TGC-GTTT-GAATGC-GTTTAC-ATGACGTG-TTTATT-TTC-CATT---CAAATACA---TCTGGTTA---CC---ATCGCA-ACATAATAC-ACGCATAG-TTAC--CGATGAT----ATGG----A------GTAA---GAAAATGAT-A---TGGCTCCGACCAGCCAGTTCA-ATCTGTACCTCTAATGTT-GAA--ATGTTG------CA-------T--T-GA-TT--ACA--T-AAT--AGTTA----GTTGTTTCATGCTGTGAGA---TT-------------ACGATGA--TTTATGATATTGAACCGATATTGATTT-ATCAAA--TGATTTTTTTTT------ATCGACATATAAT---TTTTT-CTGCATGCAAATCCGCTGTATCAGAA--C---------TTTACAA-TTA----C-TTATCAT-GCA-----TTTCATTATTT-TACATTGAGGGATTGTAAGGCGGGAT-------------GTAA-------------GC---GTAT-CCC--AAATT-G-TTTGCCTTCC-GCTAA-TTAATCGAGTCTGCGCAATAGATGTC--ATA-G-ATCTGATCTAGAT-AGATGCAT-TTGAACGTTCACAAAT-ATGCATCGCGTGTATTCAATCCGCATATA-TCG--C-GCATTCA-AACCTC-------TATCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTATTCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA-----ATCTG-GA-TAAAAGCGTGATTAATGCGTGAAAAAAAATGTAGTGTTAACAC
gi|4 : t-TAGATTAAACACGCGTTCTAA---------AA-ATGC-GTTT-GAATGC-GTTTAAGATA-CATG-TTTATTGTTCACATT--ACAAATACA---TCTGGTTAAA-CC---ATC-CACACATAC--A-ACACATAGATTGCT-CGATGAT---TAAGGTTGGA----AAGTAATACGAAAAT-AT-A---TGGCTCCGATCAGCCA---CGTACATGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--T-GA-CTGTACA--T-AAT--AGTAATTAAGT-GTTTCG-GCTGTGTGG---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCAAGCAAATCCGCTGTATCAGAA--C---------TTTACAA-TTA----A-TTATCAT-GCA----GTTTCATTATTT-TACA-------ATTG------AGGAT-------------GTAA-------------GCCCGGGATCCCCCAGGATT-A----GCCTTCC-GCTAA-TTAATGGAGTCTGCGCAATAGATGCATTTTA-TAATCTGATCTAGATAAGATGCATATCGAACATTCACACAT-ATGCATCGCATG--TTCAATCCGCATATA-TCGT---GCATTCA-AACTACC------TATCTACTGGGTTTCAATG-CAC-ATGGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAACACAG
gi|5 : tATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATGC-GATTTGAATGC-GTTTAAGATG-CGTG-TTTATTGTTCACATT--ACAAATACA---TCTGGTTAAA-CC---ATC-CACACATAA--C-ACGCATAGATAACG-CGATGAT---TAGGG----A----AAGTAATACGAAAAT-AT-A---TGGCTCCGAT----------------GTACCTC-AATGTT-GAATCAC-TTG------CA-------T--T-GA-CAGCGCA--T-AAT--AGTAA-------------------GTGA---T--------------ACGA-GA--TT-ATGATATTAAACTGAT--TGATTT-ATCAAAAATGA-TTTTTTTT------ATCGA--CAGAAT---TTTTA-CTGCATGCAAATCCGCTGTATCAGAA--C---------TTTACAA-TTA----A-CTATCAT-GCA----GTTTCATTATTG-TACA-------ATTG------AGGAT-------------GTAA-------------GC---GTAT-CCCCAAAATT-G-TTTACCTTCC-GCTAA-TTAATCGAGTCTGCGCAATAGATGCA--ATA-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACACAT-ACGCATCGCGTG--TTCAATCCGCATATA-TCG--C-GCATTCA-AACCACC------TATCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACAATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATACGTG-AAAAAAATGTAGTGTGAACACGGT
gi|6 : ATACT-GTGTTCACACCTAATGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGCTCTAATTTAGACTAAATATGC-ATTTTGAATGC-GTTTAAGATA-CGTA-TTTATTGTTCACATT--ACAAATACAACATTTGGTTAAA-CC---ATC-CACACATAA--C-ACGCATAGATTACA-CGATGATTTATAGCG----A----AAGTAA---GAAAAT-AT-A---TGGCTCCGATCAGCCA---CGTACATGTACCTC-AGTGTTAAAATCAC-TTGACTGTACAGAATCACT--T-GA-CTGTACA--T-AAT--ATTAA----GT-GTTTCG-GCTGTGTGA---TACCTGGGGTGTGACACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCA----------------------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCTAATCAGAA--C---------TTTACAA-TTA----A-TTATCAT-GCA----GTTTCATTATTT-TACA-------ATTG------AGGATGTAAGCCTGGGATGTAA-------------GC---ATAT-CCCCAAAATT-G-TTTACCTTCC-ATTAA-TTAATCGAGTCTGTGCAATAGATGCA--AT
gi|7 : taTACT-GTGTTCACACCTAACGCGC-ATTAAATATTTT-ATCAA-----TC-TAGATTAAACACGTGTTCTAA---------AA-ATGC-GTTTTGAATGC-GTTTAAGATA-CGTG-TTTATTGTTCACATT--ACAAATACA---TCTGGTTAAA-CC---ATC-CACACATAA--C-ACGCATAGATTGCG-CGATGAT---TAGGG----A----AAGTAATACAAAAAT-AT-A---TGGCTCCGATCAGCCA---TGTATATGTATCTT-AATGTT-GAATCAC-TTG------CA-------T--T-GA-CTGCACA--T-AAT--AGTAA----GT-GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAAtgta
gi|7 : A----A-TTATCAA-GCA----GTTTCATTATTT--ACA-------ATTG------AGGAT-------------GTAAGCCCGGAATGTAAGC---GTAT-CCCCAAAATTTG-TTTGCCTTCC-GCTAA-TGAATTGAGACTGCACAATAGATGCA--ATA-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACattatcaagcagtttcattatttacaattgaggatgtaagcccggaatgtaagcgtatccccaaaatttgtttgccttccgctaatgaattgagactgcacaatagatgcaatagaatctgatctagataagatgcagattgaacgttcacagg
gi|8 : tactgtgttcacacctaacgcgcattaaatattttatcaatctagattaaacacgtgttctaaaaatgcgttttgaatgcgtttaagatacgtgtttattgttcacattacaaatacatctggttaaaccatccacacataacacgcatagattgcgcgatgattagggaaagtaatacaaaaatatatggctccgatcagccatgtatatgtatcttaatgttgaatcacttgcattgactgcacataatagtaagtgtttcggctgtgtgatacgagattatgatattgaAAAT-AA-AA--TGGCTCCGATCAGCCA---CG------TACCTC-AC------AATCAC-TTG-------A-------T-------CTACAC---T-AAT----TAA----GT-GTTTCG-GCGGTGTGA---T--------------ACGT-GA--TT-ATGATATTGAAATGAT--TGATTTGATT--AATTGATTTT--------------G------------TTTTT-CTGCATGCAAATCCGCCTCATCAGGAGTCTATTTGCAGTCTACAA-TTATTTCATTTTTCATAGCGACATGTTTTATTATTT-CACA-------ATTG------AGGAT-------------GGCG-------------GC---AAAT-CTCCCAAATT-agg
gi|9 : gcaagGACTGAACGTTCACACAT-ATGTATCGCACG--TTCAATCCGCATATA-TCG--C-GCATTCA-A-CCACC------TATCTACTGGGTTTCAATG-CGC-ATTGACCTTA-TCAACGTCATGCA-TCTGTATTCAA-TCTACATGTAGATACGATTGTAATG--TGAATGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAATACCGTttggtagcgttta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTTTGATATTGAACTACTTGTTTGGATTTATCAATCGGTTGATTTTCTTTTTCT
Alignments
lowQualScore : 3333333333 11111 222222222 111 111 111111111 111 111111111 222222222222222 22222222222222 1111111 222222222 111111 1111 1111111 111111 2222222222222 2222222222222 111111 111111 1111 11
lowQualScore : 6 6 0000000000 66666 5 222222222 5 5 5 5 5 5 77 000 5 000 5 7777 66 888 222222222 9 3 3 000 444444444 3 1 555 3 333333333333333 44 3 1 77 3 777 8888888 3 2 666 55555555555555 4 55 4 66 5 66666 6 00 4444444 66 888 5 77 222222222 5 222222 5 5 0000 5 2 6666666 444444 7777777777777 7777777777777 888 5 5 5 5 5 0 66 5 6 99 6 6 6 6 999999 6 6 5 5 5 5 5 666666 66 5555 5 33
lowQualScore : . . .......... ..... . ......... . . . . . . .. ... . ... . .... .. ... ......... . . . ... ......... . . ... . ............... .. . . .. . ... ....... . . ... .............. . .. . .. . ..... . .. ....... .. ... . .. ......... . ...... . . .... . . ....... ...... ............. ............. ... . . . . . . .. . . .. . . . . ...... . . . . . . . ...... .. .... . ..
lowQualScore : 7 7 0000000000 77777 7 999999999 7 7 0 7 7 7 99 000 7 000 7 0000 44 888 222222222 4 6 6 000 222222222 6 3 555 6 666666666666666 66 3 8 99 3 888 6666666 6 3 444 00000000000000 0 55 0 99 0 66666 2 44 6666666 99 888 0 99 999999999 7 999999 0 0 6666 0 0 2222222 444444 5555555555555 5555555555555 888 0 0 7 7 0 1 99 7 7 22 7 7 7 7 222222 7 7 7 7 7 7 7 444444 99 6666 0 22
consensus : ATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTAAGATG-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTAC-GCGATGAT---TAGGG----A----AAGTAATACGAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--TGA-CTGTACA--T-AAT--AGTAA----GT-GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCGTATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACACAT-ATGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAACACGGT
Reference ( family-2539 ) : ATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTAAGATG-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTAC-GCGATGAT---TAGGG----A----AAGTAATACGAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--TGA-CTGTACA--T-AAT--AGTAA----GT-GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCGTATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACACAT-ATGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAACACGGT
gi|1 : ATACT-GTGTTCACACCTAACGCGCCATT--------TTATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATGCCGATTTG-ATGCCGTTTAAGATG-CGTGGTTTATTGTTCACATTTTACAAAT-CA---TCTGGTTAAAACCTAGATC-CACACATAA--C-ACGCATAGATAACGGCGATGAT---T-GGG----A----AAGTAATACGAAAAT-ATTA---TGGCTCCGAT---------------TGTACCTC-AATG-T-GAATCAC-TTG------CAT------T--TGA-CAGCG-G--C-AAT--AGTAA----------------TGTG-GA---T--------------ACGA-GAATTT-ATGATATTAAACTGA---TGATTT-ATCAAAAATGATTCTTTTTT------ATCGA--CAGAAT---TTTTA-CTGCATGCAAATC--CTGTATCAGAA--C---------TTTACAAATTA----A-CTATCATT-GCA----GTTTCATTATGTGTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-GATTTACCTTCCCGCTAAATTAATCGAGTCTTGGCAATAGATGC-AT--ACGAATCTGATCTAGATAAGAGGCAGATTGAACGTTCACACATAAAGCATCGCGTG--TTCAATCCGCATATACTCGCGGCATTCAGAACCACCTTA------TCTACTGGGTTTCAATGACGCGATGGACCC-ATTCA-CGT-TTGTA-T-CGGATTCAATTCTA------GAT-CAATTGTAATGTTTGAACGATAT---TATCTGCGATT-AAAGCGGGATTAATTACTGAAAAAAAATGTAG-G-GAACAC
gi|10 : caGAAAAT-A-TA---TGGCTCCGATCAGCCA---------TGTACCTC-AC------AATCAC-TTG--------------------A-CTCTACAC-T-AAT----TAA----GT-GTTTCG-GCGGTGTGA---T--------------ACGA-GG--TT-ATGATATTGAAATGAT--TGATT----------TGA--TTTATCA------ATCGA--TTGATTTTGTTTTT-CTGCATACAAATCCGCCTCATCAGc
gi|11 : aA--C-ACGCATAGATTAC-GCGATGAT---TAGGG----ATTTCAAGTAATACAAAA------A---TGGCTCCGATCAGCCACGCACA---TGTGCTTC-AATGTT-GAATCAC-ATG------CA-------T--TGA-CTGTACATTT-AAT--AGTA
gi|12 : TGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-AATA------AATACGATTGTAATG--TGAACGATATAATTATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAtaag
gi|13 : AAAT-G-CA---TGGCTCC-ATCAGCCAC--AAA---T----CTC-AACG-----ATCAC-TCG--------------------A-CTCTGCA--TTAAT----TAA----AT-GTTTCA-ATAGTGTGA---T--------------
gi|14 : cACGATTGTAATG--TGAATGATA----TATCTG-GATCAAAAGCGTGATTAATGCGTG---AAAAATGTAGTGTGAACACGGT
gi|15 : T-AATGAATTGAAACTGCG---TAGATGTAAT--A-AA--CAGATGTA-ATAAAATGCAGATT
gi|17 : ttcccttt-------T--TGAACTCTACA--C---T--AG-AA----GT-GTTTCG-GCAGCGTAATCGT--------------GCGA-GG--TT-GTGAT
gi|2 : cATACT-GTGTTCACACCTAACGCGC-ATT----------ATTAAATTCATC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTACGATA-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAT--TTACGCATAGATTAC-GCGATGAT---TAGGG----A----AAGTAA---GAAAAT-A-TAATATGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------TATTGA-CTGTACA--T-AATTTAGTGA----GC-GTTTCA-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTTTTTTTGATCGA--TAGAAT---TTTTTTCTGCATGCAAATCCGCTGTATCAGAA--C---------TTCAC-AATTA----T-TTATCA-T-GCA----GGTTCATTAT-------------------------GGAT-------------GTAA-------------GC---GTATCCCC-AAA-TT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATACAGACT---------------ATGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TACATGTATCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CTTCTTGTA-TCTGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG--AAAAAATGTAGTGTGAACACGGT
gi|3 : ttATACTTGTGTTCACACC-AACG-GC---T--------T-ATAAT-----TCATAGATTAA-C-CGCGTTCTAA---------AA--TG-CGTTT-GAATG-CGTTTAC-ATGACGT-GTTTATT-TTC-CA--TT-CAAATACA---TCTGGTT-A--CC---ATCGCA-ACATAATAC-ACGCATAG-TTAC--CGATGAT----ATGG----A------GTAA---GAAAATGA-TA---TGGCTCCGACCAGCCA-GTTCAATCTGTACCTCTAATGTT-GAA--ATGTTG------CA-------T--TGA-TT--ACA--T-AAT--AGTTA----GTTGTTTCATGCTGTGAGA---TT-------------ACGATGA--TTTATGATATTGAACCGATATTGATTT-ATCAAA--TGATTTTTTTTT------ATCGACATATAAT---TTTTT-CTGCATGCAAATCCGCTGTATCAGAA--C---------TTTAC-AATTA----C-TTATCA-T-GCA-----TTTCATTAT-TTTACATTGAGGGATTGTAAGGCGGGAT-------------GTAA-------------GC---GTATCCC---AAATT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGTCAT--A-G-ATCTGATCTAGAT-AGATGCAT-TTGAACGTTCACAAAT-ATGCATCGCGTGTATTCAATCCGCATATA-TCGC-GCATTCA-AACC-TC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTATTCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA-----ATCTG-GA-TAAAAGCGTGATTAATGCGTGAAAAAAAATGTAGTGTTAACAC
gi|4 : t-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTT-GAATG-CGTTTAAGATA-CAT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAC--A-ACACATAGATTGC-TCGATGAT---TAAGGTTGGA----AAGTAATACGAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--TGA-CTGTACA--T-AAT--AGTAATTAAGT-GTTTCG-GCTGTGTGG---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCAAGCAAATCCGCTGTATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGAT-------------GTAA-------------GCCCGGGATCCCCCAGGATT-A----GCCTT-CCGCT-AATTAATGGAGTCTGCGCAATAGATGCATTTTA-TAATCTGATCTAGATAAGATGCATATCGAACATTCACACAT-ATGCATCGCATG--TTCAATCCGCATATA-TCGT-GCATTCA-AACTACC-TA------TCTACTGGGTTTCAATG-CAC-ATGGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAACACAG
gi|5 : tATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGATTTGAATG-CGTTTAAGATG-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATAAC-GCGATGAT---TAGGG----A----AAGTAATACGAAAAT-A-TA---TGGCTCCG-------------A---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--TGA-CAGCGCA--T-AAT--AGTAA-------------------GTGA---T--------------ACGA-GA--TT-ATGATATTAAACTGAT--TGATTT-ATCAAAAATGA-TTTTTTTT------ATCGA--CAGAAT---TTTTA-CTGCATGCAAATCCGCTGTATCAGAA--C---------TTTAC-AATTA----A-CTATCA-T-GCA----GTTTCATTAT-TGTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-G-TTTACCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACACAT-ACGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACAATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATACGTG-AAAAAAATGTAGTGTGAACACGGT
gi|6 : ATACT-GTGTTCACACCTAATGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGCTCTAATTTAGACTAAATATG-CATTTTGAATG-CGTTTAAGATA-CGT-ATTTATTGTTCACA--TTACAAATACAACATTTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTAC-ACGATGATTTATAGCG----A----AAGTAA---GAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AGTGTTAAAATCAC-TTGACTGTACAGAATCACT--TGA-CTGTACA--T-AAT--ATTAA----GT-GTTTCG-GCTGTGTGA---TACCTGGGGTGTGACACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCA----------------------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCTAATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGATGTAAGCCTGGGATGTAA-------------GC---ATATCCCC-AAAATT-G-TTTACCTT-CCATT-AATTAATCGAGTCTGTGCAATAGATGCAAT--
gi|7 : taTACT-GTGTTCACACCTAACGCGC-ATTAAATATTTT-ATCAA-----TC-TAGATTAAACACGTGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTAAGATA-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTGC-GCGATGAT---TAGGG----A----AAGTAATACAAAAAT-A-TA---TGGCTCCGATCAGCCATGTATA---TGTATCTT-AATGTT-GAATCAC-TTG------CA-------T--TGA-CTGCACA--T-AAT--AGTAA----GT-GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAAtgta
gi|7 : A----A-TTATCA-A-GCA----GTTTCATTAT-TT-ACA-------ATTG------AGGAT-------------GTAAGCCCGGAATGTAAGC---GTATCCCC-AAAATTTG-TTTGCCTT-CCGCT-AATGAATTGAGACTGCACAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACAattatcaagcagtttcattatttacaattgaggatgtaagcccggaatgtaagcgtatccccaaaatttgtttgccttccgctaatgaattgagactgcacaatagatgcaatagaatctgatctagataagatgcagattgaacgttcacagg
gi|8 : tactgtgttcacacctaacgcgcattaaatattttatcaatctagattaaacacgtgttctaaaaatgcgttttgaatgcgtttaagatacgtgtttattgttcacattacaaatacatctggttaaaccatccacacataacacgcatagattgcgcgatgattagggaaagtaatacaaaaatatatggctccgatcagccatgtatatgtatcttaatgttgaatcacttgcattgactgcacataatagtaagtgtttcggctgtgtgatacgagattatgatattgaAAAT-A-AAA--TGGCTCCGATCAGCCACGTAC---------CTC-AC------AATCAC-TTG-------A-------T------CTACAC---T-AAT----TAA----GT-GTTTCG-GCGGTGTGA---T--------------ACGT-GA--TT-ATGATATTGAAATGAT--TGATTTGATT--AATTGATTTT--------------G------------TTTTT-CTGCATGCAAATCCGCCTCATCAGGAGTCTATTTGCAGTCTAC-AATTATTTCATTTTTCA-TAGCGACATGTTTTATTAT-TTCACA-------ATTG------AGGAT-------------GGCG-------------GC---AAATCTCC-CAAATT-gg
gi|9 : gcaagGACTGAACGTTCACACAT-ATGTATCGCACG--TTCAATCCGCATATA-TCGC-GCATTCA-A-CCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCTTA-TCAACGTCATGCA-TCTGTATTCAA-TCTACATGTAGATACGATTGTAATG--TGAATGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAATACCGTttggtagcgttta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTTTGATATTGAACTACTTGTTTGGATTTATCAATCGGTTGATTTTCTTTTTCT
Alignments
lowQualScore : 3333333333 11111 222222222 111 111 111111111 111 111111111 222222222222222 22222222222222 1111111 222222222 111111 1111 1111111 111111 2222222222222 2222222222222 111111 111111 1111 11
lowQualScore : 6 6 0000000000 66666 5 222222222 5 5 5 5 5 5 77 000 5 000 5 7777 66 888 222222222 9 3 3 000 444444444 3 1 555 3 333333333333333 44 3 1 77 3 777 8888888 3 2 666 55555555555555 4 55 4 66 5 66666 6 00 4444444 66 888 5 77 222222222 5 222222 5 5 0000 5 2 6666666 444444 7777777777777 7777777777777 888 5 5 5 5 5 0 66 5 6 99 6 6 6 6 999999 6 6 5 5 5 5 5 666666 66 5555 5 33
lowQualScore : . . .......... ..... . ......... . . . . . . .. ... . ... . .... .. ... ......... . . . ... ......... . . ... . ............... .. . . .. . ... ....... . . ... .............. . .. . .. . ..... . .. ....... .. ... . .. ......... . ...... . . .... . . ....... ...... ............. ............. ... . . . . . . .. . . .. . . . . ...... . . . . . . . ...... .. .... . ..
lowQualScore : 7 7 0000000000 77777 7 999999999 7 7 0 7 7 7 99 000 7 000 7 0000 44 888 222222222 4 6 6 000 222222222 6 3 555 6 666666666666666 66 3 8 99 3 888 6666666 6 3 444 00000000000000 0 55 0 99 0 66666 2 44 6666666 99 888 0 99 999999999 7 999999 0 0 6666 0 0 2222222 444444 5555555555555 5555555555555 888 0 0 7 7 0 1 99 7 7 22 7 7 7 7 222222 7 7 7 7 7 7 7 444444 99 6666 0 22
consensus : ATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTAAGATG-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTAC-GCGATGAT---TAGGG----A----AAGTAATACGAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--TGA-CTGTACA--T-AAT--AGTAA----GT-GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCGTATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACACAT-ATGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAACACGGT
Reference ( family-2539 ) : ATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTAAGATG-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTAC-GCGATGAT---TAGGG----A----AAGTAATACGAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--TGA-CTGTACA--T-AAT--AGTAA----GT-GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCGTATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACACAT-ATGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAACACGGT
gi|1 : ATACT-GTGTTCACACCTAACGCGCCATT--------TTATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATGCCGATTTG-ATGCCGTTTAAGATG-CGTGGTTTATTGTTCACATTTTACAAAT-CA---TCTGGTTAAAACCTAGATC-CACACATAA--C-ACGCATAGATAACGGCGATGAT---T-GGG----A----AAGTAATACGAAAAT-ATTA---TGGCTCCGAT---------------TGTACCTC-AATG-T-GAATCAC-TTG------CAT------T--TGA-CAGCG-G--C-AAT--AGTAA----------------TGTG-GA---T--------------ACGA-GAATTT-ATGATATTAAACTGA---TGATTT-ATCAAAAATGATTCTTTTTT------ATCGA--CAGAAT---TTTTA-CTGCATGCAAATC--CTGTATCAGAA--C---------TTTACAAATTA----A-CTATCATT-GCA----GTTTCATTATGTGTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-GATTTACCTTCCCGCTAAATTAATCGAGTCTTGGCAATAGATGC-AT--ACGAATCTGATCTAGATAAGAGGCAGATTGAACGTTCACACATAAAGCATCGCGTG--TTCAATCCGCATATACTCGCGGCATTCAGAACCACCTTA------TCTACTGGGTTTCAATGACGCGATGGACCC-ATTCA-CGT-TTGTA-T-CGGATTCAATTCTA------GAT-CAATTGTAATGTTTGAACGATAT---TATCTGCGATT-AAAGCGGGATTAATTACTGAAAAAAAATGTAG-G-GAACAC
gi|10 : caGAAAAT-A-TA---TGGCTCCGATCAGCCA---------TGTACCTC-AC------AATCAC-TTG--------------------A-CTCTACAC-T-AAT----TAA----GT-GTTTCG-GCGGTGTGA---T--------------ACGA-GG--TT-ATGATATTGAAATGAT--TGATT----------TGA--TTTATCA------ATCGA--TTGATTTTGTTTTT-CTGCATACAAATCCGCCTCATCAGc
gi|11 : aA--C-ACGCATAGATTAC-GCGATGAT---TAGGG----ATTTCAAGTAATACAAAA------A---TGGCTCCGATCAGCCACGCACA---TGTGCTTC-AATGTT-GAATCAC-ATG------CA-------T--TGA-CTGTACATTT-AAT--AGTA
gi|12 : TGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-AATA------AATACGATTGTAATG--TGAACGATATAATTATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAtaag
gi|13 : AAAT-G-CA---TGGCTCC-ATCAGCCAC--AAA---T----CTC-AACG-----ATCAC-TCG--------------------A-CTCTGCA--TTAAT----TAA----AT-GTTTCA-ATAGTGTGA---T--------------
gi|14 : cACGATTGTAATG--TGAATGATA----TATCTG-GATCAAAAGCGTGATTAATGCGTG---AAAAATGTAGTGTGAACACGGT
gi|15 : T-AATGAATTGAAACTGCG---TAGATGTAAT--A-AA--CAGATGTA-ATAAAATGCAGATT
gi|17 : ttcccttt-------T--TGAACTCTACA--C---T--AG-AA----GT-GTTTCG-GCAGCGTAATCGT--------------GCGA-GG--TT-GTGAT
gi|2 : cATACT-GTGTTCACACCTAACGCGC-ATT----------ATTAAATTCATC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTACGATA-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAT--TTACGCATAGATTAC-GCGATGAT---TAGGG----A----AAGTAA---GAAAAT-A-TAATATGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------TATTGA-CTGTACA--T-AATTTAGTGA----GC-GTTTCA-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTTTTTTTGATCGA--TAGAAT---TTTTTTCTGCATGCAAATCCGCTGTATCAGAA--C---------TTCAC-AATTA----T-TTATCA-T-GCA----GGTTCATTAT-------------------------GGAT-------------GTAA-------------GC---GTATCCCC-AAA-TT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATACAGACT---------------ATGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TACATGTATCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CTTCTTGTA-TCTGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG--AAAAAATGTAGTGTGAACACGGT
gi|3 : ttATACTTGTGTTCACACC-AACG-GC---T--------T-ATAAT-----TCATAGATTAA-C-CGCGTTCTAA---------AA--TG-CGTTT-GAATG-CGTTTAC-ATGACGT-GTTTATT-TTC-CA--TT-CAAATACA---TCTGGTT-A--CC---ATCGCA-ACATAATAC-ACGCATAG-TTAC--CGATGAT----ATGG----A------GTAA---GAAAATGA-TA---TGGCTCCGACCAGCCA-GTTCAATCTGTACCTCTAATGTT-GAA--ATGTTG------CA-------T--TGA-TT--ACA--T-AAT--AGTTA----GTTGTTTCATGCTGTGAGA---TT-------------ACGATGA--TTTATGATATTGAACCGATATTGATTT-ATCAAA--TGATTTTTTTTT------ATCGACATATAAT---TTTTT-CTGCATGCAAATCCGCTGTATCAGAA--C---------TTTAC-AATTA----C-TTATCA-T-GCA-----TTTCATTAT-TTTACATTGAGGGATTGTAAGGCGGGAT-------------GTAA-------------GC---GTATCCC---AAATT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGTCAT--A-G-ATCTGATCTAGAT-AGATGCAT-TTGAACGTTCACAAAT-ATGCATCGCGTGTATTCAATCCGCATATA-TCGC-GCATTCA-AACC-TC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTATTCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA-----ATCTG-GA-TAAAAGCGTGATTAATGCGTGAAAAAAAATGTAGTGTTAACAC
gi|4 : t-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTT-GAATG-CGTTTAAGATA-CAT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAC--A-ACACATAGATTGC-TCGATGAT---TAAGGTTGGA----AAGTAATACGAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--TGA-CTGTACA--T-AAT--AGTAATTAAGT-GTTTCG-GCTGTGTGG---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCAAGCAAATCCGCTGTATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGAT-------------GTAA-------------GCCCGGGATCCCCCAGGATT-A----GCCTT-CCGCT-AATTAATGGAGTCTGCGCAATAGATGCATTTTA-TAATCTGATCTAGATAAGATGCATATCGAACATTCACACAT-ATGCATCGCATG--TTCAATCCGCATATA-TCGT-GCATTCA-AACTACC-TA------TCTACTGGGTTTCAATG-CAC-ATGGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAACACAG
gi|5 : tATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGATTTGAATG-CGTTTAAGATG-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATAAC-GCGATGAT---TAGGG----A----AAGTAATACGAAAAT-A-TA---TGGCTCCG-------------A---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--TGA-CAGCGCA--T-AAT--AGTAA-------------------GTGA---T--------------ACGA-GA--TT-ATGATATTAAACTGAT--TGATTT-ATCAAAAATGA-TTTTTTTT------ATCGA--CAGAAT---TTTTA-CTGCATGCAAATCCGCTGTATCAGAA--C---------TTTAC-AATTA----A-CTATCA-T-GCA----GTTTCATTAT-TGTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-G-TTTACCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACACAT-ACGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACAATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATACGTG-AAAAAAATGTAGTGTGAACACGGT
gi|6 : ATACT-GTGTTCACACCTAATGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGCTCTAATTTAGACTAAATATG-CATTTTGAATG-CGTTTAAGATA-CGT-ATTTATTGTTCACA--TTACAAATACAACATTTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTAC-ACGATGATTTATAGCG----A----AAGTAA---GAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AGTGTTAAAATCAC-TTGACTGTACAGAATCACT--TGA-CTGTACA--T-AAT--ATTAA----GT-GTTTCG-GCTGTGTGA---TACCTGGGGTGTGACACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCA----------------------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCTAATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGATGTAAGCCTGGGATGTAA-------------GC---ATATCCCC-AAAATT-G-TTTACCTT-CCATT-AATTAATCGAGTCTGTGCAATAGATGCAAT--
gi|7 : taTACT-GTGTTCACACCTAACGCGC-ATTAAATATTTT-ATCAA-----TC-TAGATTAAACACGTGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTAAGATA-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTGC-GCGATGAT---TAGGG----A----AAGTAATACAAAAAT-A-TA---TGGCTCCGATCAGCCATGTATA---TGTATCTT-AATGTT-GAATCAC-TTG------CA-------T--TGA-CTGCACA--T-AAT--AGTAA----GT-GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAAtgta
gi|7 : A----A-TTATCA-A-GCA----GTTTCATTAT-TT-ACA-------ATTG------AGGAT-------------GTAAGCCCGGAATGTAAGC---GTATCCCC-AAAATTTG-TTTGCCTT-CCGCT-AATGAATTGAGACTGCACAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACAattatcaagcagtttcattatttacaattgaggatgtaagcccggaatgtaagcgtatccccaaaatttgtttgccttccgctaatgaattgagactgcacaatagatgcaatagaatctgatctagataagatgcagattgaacgttcacagg
gi|8 : tactgtgttcacacctaacgcgcattaaatattttatcaatctagattaaacacgtgttctaaaaatgcgttttgaatgcgtttaagatacgtgtttattgttcacattacaaatacatctggttaaaccatccacacataacacgcatagattgcgcgatgattagggaaagtaatacaaaaatatatggctccgatcagccatgtatatgtatcttaatgttgaatcacttgcattgactgcacataatagtaagtgtttcggctgtgtgatacgagattatgatattgaAAAT-A-AAA--TGGCTCCGATCAGCCACGTAC---------CTC-AC------AATCAC-TTG-------A-------T------CTACAC---T-AAT----TAA----GT-GTTTCG-GCGGTGTGA---T--------------ACGT-GA--TT-ATGATATTGAAATGAT--TGATTTGATT--AATTGATTTT--------------G------------TTTTT-CTGCATGCAAATCCGCCTCATCAGGAGTCTATTTGCAGTCTAC-AATTATTTCATTTTTCA-TAGCGACATGTTTTATTAT-TTCACA-------ATTG------AGGAT-------------GGCG-------------GC---AAATCTCC-CAAATT-gg
gi|9 : gcaagGACTGAACGTTCACACAT-ATGTATCGCACG--TTCAATCCGCATATA-TCGC-GCATTCA-A-CCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCTTA-TCAACGTCATGCA-TCTGTATTCAA-TCTACATGTAGATACGATTGTAATG--TGAATGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAATACCGTttggtagcgttta
blockSeqs : T . AAATATTTT ATTCA A TTTAGACTA T . T . A . . ACA . . G TAC G TTA ATTTC T G . ATA GTTCAATC T T TTA G ACTGTACAGAATCAC AT A C TT T TTA TTAAGT T G TCG ACCTGGGGTGTGAC T . T AT G AAAAA T TTTTTTG CA TTG T GT TATTTGCAG . TTTCAT . A ACAT . T TTGAGGG TAAGGC GTAAGCCTGGGAT GCCCGGAATGTAA CCG C T . . . TT . . TA . . . . CATGTA . . T . A T . CATGTA . TAAT . AA
blockSeqs : . . T . . . . . T . . . . . . . . TT G . TTGGA T . . A CGCACA . C TT . CA . . G C . A GTT . A . T . . . . . AAAAA T A . . . . . . T . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A
blockSeqs : . . T . . . . . T . . . . . . . . C T . A T . . . CGTACA . T TT . CA . . C . . A GT . A . . . . . . . AAAAA T T . . . . . . C . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A
blockSeqs : . . T . . . . . T . . . . . . . . A G . A T . . . CGTACA . T TT . CA . . C . . A AT . T . . . . . . . AAA T T . . . . . . A . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . C A . A . . . . CGTACA . T TT . CA . . G . . A GT . T . . . . . . . AAT . T . . . . . . A . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . C G . A . . . . TGTATA . T TT . CA . . G . . A GC . T . . . . . . . A . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : C . . A . . . . CGTAC . T TT . CA . . G . . A GT . T . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . .
blockSeqs : . . . CAAA . T . . A . . G . . A GT . T . . . . .
blockSeqs : . . . A . . . . . . . G . . . GT . G . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : T********* ** *** G* CGTACA*** TT* CA************* GT***** ** ** **** A*
originalCons : ATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTAAGATG-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTAC-GCGATGAT---TAGGG----A----AAGTAATACGAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--TGA-CTGTACA--T-AAT--AGTAA----GT-GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCGTATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACACAT-ATGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAACACGGT
finalCons : ATACT-GTGTTCACACCTAACGCGC-ATTT---------ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTAAGATG-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTACG-CGATGAT---TAGGG----A----AAGTAATACGAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTGCA-------------T--TGA-CTGTACA--T-AAT--AGTAAGT-----GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCGTATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACACAT-ATGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTGA-AAAAAATGTAGTGTGAACACGGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTTTGATATTGAACTACTTGTTTGGATTTATCAATCGGTTGATTTTCTTTTTCT
Alignments
lowQualScore : 3333333333 11111 222222222 111 111 111111111 111 111111111 222222222222222 22222222222222 1111111 222222222 111111 1111 1111111 111111 2222222222222 2222222222222 111111 111111 1111 11
lowQualScore : 6 6 0000000000 66666 5 222222222 5 5 5 5 5 5 77 000 5 000 5 7777 66 888 222222222 9 3 3 000 444444444 3 1 555 3 333333333333333 44 3 1 77 3 777 8888888 3 2 666 55555555555555 4 55 4 66 5 66666 6 00 4444444 66 888 5 77 222222222 5 222222 5 5 0000 5 2 6666666 444444 7777777777777 7777777777777 888 5 5 5 5 5 0 66 5 6 99 6 6 6 6 999999 6 6 5 5 5 5 5 666666 66 5555 5 33
lowQualScore : . . .......... ..... . ......... . . . . . . .. ... . ... . .... .. ... ......... . . . ... ......... . . ... . ............... .. . . .. . ... ....... . . ... .............. . .. . .. . ..... . .. ....... .. ... . .. ......... . ...... . . .... . . ....... ...... ............. ............. ... . . . . . . .. . . .. . . . . ...... . . . . . . . ...... .. .... . ..
lowQualScore : 7 7 0000000000 77777 7 999999999 7 7 0 7 7 7 99 000 7 000 7 0000 44 888 222222222 4 6 6 000 222222222 6 3 555 6 666666666666666 66 3 8 99 3 888 6666666 6 3 444 00000000000000 0 55 0 99 0 66666 2 44 6666666 99 888 0 99 999999999 7 999999 0 0 6666 0 0 2222222 444444 5555555555555 5555555555555 888 0 0 7 7 0 1 99 7 7 22 7 7 7 7 222222 7 7 7 7 7 7 7 444444 99 6666 0 22
consensus : ATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTAAGATG-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTAC-GCGATGAT---TAGGG----A----AAGTAATACGAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--TGA-CTGTACA--T-AAT--AGTAA----GT-GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCGTATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACACAT-ATGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAACACGGT
Reference ( family-2539 ) : ATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTAAGATG-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTAC-GCGATGAT---TAGGG----A----AAGTAATACGAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--TGA-CTGTACA--T-AAT--AGTAA----GT-GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCGTATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACACAT-ATGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAACACGGT
gi|1 : ATACT-GTGTTCACACCTAACGCGCCATT--------TTATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATGCCGATTTG-ATGCCGTTTAAGATG-CGTGGTTTATTGTTCACATTTTACAAAT-CA---TCTGGTTAAAACCTAGATC-CACACATAA--C-ACGCATAGATAACGGCGATGAT---T-GGG----A----AAGTAATACGAAAAT-ATTA---TGGCTCCGAT---------------TGTACCTC-AATG-T-GAATCAC-TTG------CAT------T--TGA-CAGCG-G--C-AAT--AGTAA----------------TGTG-GA---T--------------ACGA-GAATTT-ATGATATTAAACTGA---TGATTT-ATCAAAAATGATTCTTTTTT------ATCGA--CAGAAT---TTTTA-CTGCATGCAAATC--CTGTATCAGAA--C---------TTTACAAATTA----A-CTATCATT-GCA----GTTTCATTATGTGTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-GATTTACCTTCCCGCTAAATTAATCGAGTCTTGGCAATAGATGC-AT--ACGAATCTGATCTAGATAAGAGGCAGATTGAACGTTCACACATAAAGCATCGCGTG--TTCAATCCGCATATACTCGCGGCATTCAGAACCACCTTA------TCTACTGGGTTTCAATGACGCGATGGACCC-ATTCA-CGT-TTGTA-T-CGGATTCAATTCTA------GAT-CAATTGTAATGTTTGAACGATAT---TATCTGCGATT-AAAGCGGGATTAATTACTGAAAAAAAATGTAG-G-GAACAC
gi|10 : caGAAAAT-A-TA---TGGCTCCGATCAGCCA---------TGTACCTC-AC------AATCAC-TTG--------------------A-CTCTACAC-T-AAT----TAA----GT-GTTTCG-GCGGTGTGA---T--------------ACGA-GG--TT-ATGATATTGAAATGAT--TGATT----------TGA--TTTATCA------ATCGA--TTGATTTTGTTTTT-CTGCATACAAATCCGCCTCATCAGc
gi|11 : aA--C-ACGCATAGATTAC-GCGATGAT---TAGGG----ATTTCAAGTAATACAAAA------A---TGGCTCCGATCAGCCACGCACA---TGTGCTTC-AATGTT-GAATCAC-ATG------CA-------T--TGA-CTGTACATTT-AAT--AGTA
gi|12 : TGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-AATA------AATACGATTGTAATG--TGAACGATATAATTATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAtaag
gi|13 : AAAT-G-CA---TGGCTCC-ATCAGCCAC--AAA---T----CTC-AACG-----ATCAC-TCG--------------------A-CTCTGCA--TTAAT----TAA----AT-GTTTCA-ATAGTGTGA---T--------------
gi|14 : cACGATTGTAATG--TGAATGATA----TATCTG-GATCAAAAGCGTGATTAATGCGTG---AAAAATGTAGTGTGAACACGGT
gi|15 : T-AATGAATTGAAACTGCG---TAGATGTAAT--A-AA--CAGATGTA-ATAAAATGCAGATT
gi|17 : ttcccttt-------T--TGAACTCTACA--C---T--AG-AA----GT-GTTTCG-GCAGCGTAATCGT--------------GCGA-GG--TT-GTGAT
gi|2 : cATACT-GTGTTCACACCTAACGCGC-ATT----------ATTAAATTCATC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTACGATA-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAT--TTACGCATAGATTAC-GCGATGAT---TAGGG----A----AAGTAA---GAAAAT-A-TAATATGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------TATTGA-CTGTACA--T-AATTTAGTGA----GC-GTTTCA-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTTTTTTTGATCGA--TAGAAT---TTTTTTCTGCATGCAAATCCGCTGTATCAGAA--C---------TTCAC-AATTA----T-TTATCA-T-GCA----GGTTCATTAT-------------------------GGAT-------------GTAA-------------GC---GTATCCCC-AAA-TT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATACAGACT---------------ATGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TACATGTATCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CTTCTTGTA-TCTGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG--AAAAAATGTAGTGTGAACACGGT
gi|3 : ttATACTTGTGTTCACACC-AACG-GC---T--------T-ATAAT-----TCATAGATTAA-C-CGCGTTCTAA---------AA--TG-CGTTT-GAATG-CGTTTAC-ATGACGT-GTTTATT-TTC-CA--TT-CAAATACA---TCTGGTT-A--CC---ATCGCA-ACATAATAC-ACGCATAG-TTAC--CGATGAT----ATGG----A------GTAA---GAAAATGA-TA---TGGCTCCGACCAGCCA-GTTCAATCTGTACCTCTAATGTT-GAA--ATGTTG------CA-------T--TGA-TT--ACA--T-AAT--AGTTA----GTTGTTTCATGCTGTGAGA---TT-------------ACGATGA--TTTATGATATTGAACCGATATTGATTT-ATCAAA--TGATTTTTTTTT------ATCGACATATAAT---TTTTT-CTGCATGCAAATCCGCTGTATCAGAA--C---------TTTAC-AATTA----C-TTATCA-T-GCA-----TTTCATTAT-TTTACATTGAGGGATTGTAAGGCGGGAT-------------GTAA-------------GC---GTATCCC---AAATT-G-TTTGCCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGTCAT--A-G-ATCTGATCTAGAT-AGATGCAT-TTGAACGTTCACAAAT-ATGCATCGCGTGTATTCAATCCGCATATA-TCGC-GCATTCA-AACC-TC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTATTCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA-----ATCTG-GA-TAAAAGCGTGATTAATGCGTGAAAAAAAATGTAGTGTTAACAC
gi|4 : t-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGTTT-GAATG-CGTTTAAGATA-CAT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAC--A-ACACATAGATTGC-TCGATGAT---TAAGGTTGGA----AAGTAATACGAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--TGA-CTGTACA--T-AAT--AGTAATTAAGT-GTTTCG-GCTGTGTGG---T--------------ACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCAAAAATGATTTTTTTTT------ATCGA--TAGAAT---TTTTT-CTGCAAGCAAATCCGCTGTATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGAT-------------GTAA-------------GCCCGGGATCCCCCAGGATT-A----GCCTT-CCGCT-AATTAATGGAGTCTGCGCAATAGATGCATTTTA-TAATCTGATCTAGATAAGATGCATATCGAACATTCACACAT-ATGCATCGCATG--TTCAATCCGCATATA-TCGT-GCATTCA-AACTACC-TA------TCTACTGGGTTTCAATG-CAC-ATGGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACGATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAACACAG
gi|5 : tATACT-GTGTTCACACCTAACGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGTTCTAA---------AA-ATG-CGATTTGAATG-CGTTTAAGATG-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATAAC-GCGATGAT---TAGGG----A----AAGTAATACGAAAAT-A-TA---TGGCTCCG-------------A---TGTACCTC-AATGTT-GAATCAC-TTG------CA-------T--TGA-CAGCGCA--T-AAT--AGTAA-------------------GTGA---T--------------ACGA-GA--TT-ATGATATTAAACTGAT--TGATTT-ATCAAAAATGA-TTTTTTTT------ATCGA--CAGAAT---TTTTA-CTGCATGCAAATCCGCTGTATCAGAA--C---------TTTAC-AATTA----A-CTATCA-T-GCA----GTTTCATTAT-TGTACA-------ATTG------AGGAT-------------GTAA-------------GC---GTATCCCC-AAAATT-G-TTTACCTT-CCGCT-AATTAATCGAGTCTGCGCAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACACAT-ACGCATCGCGTG--TTCAATCCGCATATA-TCGC-GCATTCA-AACCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCG-A-TCA-CGTCTTGTA-TCCGGATTCAA-TCTA------GATACAATTGTAATG--TGAACGATA----TATCTG-GATTAAAAGCGTGATTAATACGTG-AAAAAAATGTAGTGTGAACACGGT
gi|6 : ATACT-GTGTTCACACCTAATGCGC-ATT--------T-ATCAA-----TC-TAGATTAAACACGCGCTCTAATTTAGACTAAATATG-CATTTTGAATG-CGTTTAAGATA-CGT-ATTTATTGTTCACA--TTACAAATACAACATTTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTAC-ACGATGATTTATAGCG----A----AAGTAA---GAAAAT-A-TA---TGGCTCCGATCAGCCACGTACA---TGTACCTC-AGTGTTAAAATCAC-TTGACTGTACAGAATCACT--TGA-CTGTACA--T-AAT--ATTAA----GT-GTTTCG-GCTGTGTGA---TACCTGGGGTGTGACACGA-GA--TT-ATGATATTGAACTGAT--TGATTT-ATCA----------------------ATCGA--TAGAAT---TTTTT-CTGCATGCAAATCCGCCTAATCAGAA--C---------TTTAC-AATTA----A-TTATCA-T-GCA----GTTTCATTAT-TTTACA-------ATTG------AGGATGTAAGCCTGGGATGTAA-------------GC---ATATCCCC-AAAATT-G-TTTACCTT-CCATT-AATTAATCGAGTCTGTGCAATAGATGCAAT--
gi|7 : taTACT-GTGTTCACACCTAACGCGC-ATTAAATATTTT-ATCAA-----TC-TAGATTAAACACGTGTTCTAA---------AA-ATG-CGTTTTGAATG-CGTTTAAGATA-CGT-GTTTATTGTTCACA--TTACAAATACA---TCTGGTT-AAACC---ATC-CACACATAA--C-ACGCATAGATTGC-GCGATGAT---TAGGG----A----AAGTAATACAAAAAT-A-TA---TGGCTCCGATCAGCCATGTATA---TGTATCTT-AATGTT-GAATCAC-TTG------CA-------T--TGA-CTGCACA--T-AAT--AGTAA----GT-GTTTCG-GCTGTGTGA---T--------------ACGA-GA--TT-ATGATATTGAAtgta
gi|7 : A----A-TTATCA-A-GCA----GTTTCATTAT-TT-ACA-------ATTG------AGGAT-------------GTAAGCCCGGAATGTAAGC---GTATCCCC-AAAATTTG-TTTGCCTT-CCGCT-AATGAATTGAGACTGCACAATAGATGCAAT--A-GAATCTGATCTAGATAAGATGCAGATTGAACGTTCACAattatcaagcagtttcattatttacaattgaggatgtaagcccggaatgtaagcgtatccccaaaatttgtttgccttccgctaatgaattgagactgcacaatagatgcaatagaatctgatctagataagatgcagattgaacgttcacagg
gi|8 : tactgtgttcacacctaacgcgcattaaatattttatcaatctagattaaacacgtgttctaaaaatgcgttttgaatgcgtttaagatacgtgtttattgttcacattacaaatacatctggttaaaccatccacacataacacgcatagattgcgcgatgattagggaaagtaatacaaaaatatatggctccgatcagccatgtatatgtatcttaatgttgaatcacttgcattgactgcacataatagtaagtgtttcggctgtgtgatacgagattatgatattgaAAAT-A-AAA--TGGCTCCGATCAGCCACGTAC---------CTC-AC------AATCAC-TTG-------A-------T------CTACAC---T-AAT----TAA----GT-GTTTCG-GCGGTGTGA---T--------------ACGT-GA--TT-ATGATATTGAAATGAT--TGATTTGATT--AATTGATTTT--------------G------------TTTTT-CTGCATGCAAATCCGCCTCATCAGGAGTCTATTTGCAGTCTAC-AATTATTTCATTTTTCA-TAGCGACATGTTTTATTAT-TTCACA-------ATTG------AGGAT-------------GGCG-------------GC---AAATCTCC-CAAATT-gg
gi|9 : gcaagGACTGAACGTTCACACAT-ATGTATCGCACG--TTCAATCCGCATATA-TCGC-GCATTCA-A-CCACC-TA------TCTACTGGGTTTCAATG-CGC-ATTGACCTTA-TCAACGTCATGCA-TCTGTATTCAA-TCTACATGTAGATACGATTGTAATG--TGAATGATA----TATCTG-GATTAAAAGCGTGATTAATGCGTG-AAAAAAATGTAGTGTGAATACCGTttggtagcgttta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTTTGATATTGAACTACTTGTTTGGATTTATCAATCGGTTGATTTTCTTTTTCT