lowQualScore : 1 11111 11 1111111 1 22222 4444444444444444444444 1111111111 22222 555 11 11 6666666666666 111111111 111 111111111111111111 11 1111111 11111111 2222222222 11111 777777777777777777777777777777777777777777777777777777
lowQualScore : 777 2 2 8 2 2 44 0 2 1 6 11111 55 4 4 4 4 5 4 00 8888888 1 4 55 666 3 3 6 3 44 888 3 6666 555 44 77777 7 666 3 3 4 4 44 4 6666666666666666666666 4 4 4 2222222222 55 4 44444 3 222 11 55 4 4 00 4 4 2222222222222 55 44 88 444444444 3 7777 3 3 3 55 555 55 3 66 5 4 222222222222222222 7777 7777 77 3 3 3 55 77 4 0 0 2 4 55 555 55 88 6 1 4 4 0 3333333 777 44444444 4444444444 00000 0 4 4 4 66 333333333333333333333333333333333333333333333333333333 1 6 6 6
lowQualScore : ... . . . . . .. . . . . ..... .. . . . . . . .. ....... . . .. ... . . . . .. ... . .... ... .. ..... . ... . . . . .. . ...................... . . . .......... .. . ..... . ... .. .. . . .. . . ............. .. .. .. ......... . .... . . . .. ... .. . .. . . .................. .... .... .. . . . .. .. . . . . . .. ... .. .. . . . . . ....... ... ........ .......... ..... . . . . .. ...................................................... . . . .
lowQualScore : 333 9 9 6 9 9 22 2 9 3 7 33333 55 0 0 0 0 0 0 00 5555555 4 0 00 444 3 3 7 3 66 333 3 0000 888 66 44444 3 444 6 6 0 0 44 0 1111111111111111111111 0 0 0 8888888888 55 0 44444 6 777 00 55 0 0 00 0 0 7777777777777 55 88 66 666666666 6 7777 6 6 6 00 555 00 0 55 0 0 888888888888888888 7777 1111 99 3 6 6 00 44 0 7 5 5 0 55 444 55 33 6 0 4 5 8 0000000 000 55555555 5555555555 00000 2 4 4 4 11 111111111111111111111111111111111111111111111111111111 0 7 7 7
consensus : AAAGACAATAAGCAACAATAAGTAA-CAATAAGCAAC-A-A-TAAA--TACCAATAAGTAACGA-TATT-TAACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGCATAGG-AATGGAT-AAAATAT-------AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATTG--CC-G--CC-GAC---C-T-TG-AGCT-GGCCTA-CG-TATCGATC-----------------G--G-GG-TG-C-AAGTACA--C-G-T---AG--TTTC-GG-C--TTT-TTCAAAGT-CGGCTCCT--ACT--T-CGC-TCGG-CCTT-AAGT-TTTT--T--TAATTATC--AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AATT--GAA--GCTCTTTGTGCGATAAACCCGGGT-GTT--AA---A-TGC-A-C--CGTAA----GTAT----AATT--ATCA-AAC-GCAC-T--TTGAACACG-T-GCGATCGCANGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-TTAAACCGGGGA-GTTTAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCG-AT--AGTGACNGC-AA---CGA-----CCTTT--TC-TT-------T-TCT-------------AAACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAA
Reference ( gi|4 ) : AAAGACAATAAGCAACAATAAGTAA-CAATAAGCAAC-A-A-TAAA--TACCAATAAGTAACGA-TAAT-TAACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGGATAGG-AATGGAT-GAAATAT-------AAAACAATTC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATTG--CC-G--TC-GAC---C-T-TG-AGCT-GGCTTA-CG-TATCGATT-----------------A--G-GG-TG-C-AAGTACA--C-G-T---AG--TTTC-GA-C--TTT-TTCAAA---CGGCTCCT--ACT--T-CGC-TCGA-CCTT-AAGT-TTTT--TTATAATTA-C--AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AATC--GAA--GCTTTTTGTGCGATAAACCCGGGT-GTT--AA---A-TAC-A-C--CGTAA----GTAT----AATT--ATCA-AAC-GCAC-T--TTGAACACT-T-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-GTAAATCGAGGA-GTTTAACGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCG-AT--AGTGACAGC-AA---CAA-----CATTT--TC-TT-------TATCT-------------AAACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAA
gi|8 : AAAGACAGTAAGCAAGTCTAAGTAA-CAATAAGCAAC-A-A-TAAA--TACCGGTAAGTAACGA-TATA-TAACTA-------CAGC--TATTTACA-TATCA-C----------AGG-AATGGAT-AAAATAT-------A-------TC-T--AG---C--------------AATTT--GT----------------GT---G--AATT---------------------AC---CAT-GG-AGCT-GGCCTG-TG-TATCGATC-----------------A--ATGG-TG-C-AAGTA-------------G--TTTC-G--------------------GCTCCT--AGT--T-CGT-TCGG-CCTT-AAGT-TTTTATTTAT------C--AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGC-T-GTTCTTG-TTTC--AATT--GAA--GCTCTTTGTGCGATAAACCCGAGT-GTT--AA---AATGC-A-A--CGTAA----GTATCGATAATT--ATCA-AAC-GCAC-T--TTGAACACA-T-TCTATCGCAAGATT-A--TGACAC-T-TT--AATGAAGAGAAGATCAGT-TTAAACTGGGGA-GTTTAGCGTAAA-------ATCAGGAGATTT---T--------AAAG----------ATGAG-----AAAATA-ATC-GGCG-AT--AGTGATA
gi|6 : cAAAGACAATAAGCAAGTCTAAGTAA-CAATAAGTAAC-A-A-TAA------------GCAACAA-TATT-TAACTAT-T--TAGGGC--TATTTACA-TATCA-TT-TG-AGCATAGG-AATGGAT-AAAATAA-------AAAACAAATC---------------------T-AAG----------ACT-AG-C-------------GATTTGAACATTG--CC-G--GCTGAC---C-T-GG-AGCT-GGTCTG-TG-TATCG-TTCG---------------G--G-GG-TG-T-AAGTA-------------G--TTTC-GG-CC-TTT-TTTAAAGT-CGACCCCT--AGT--T-CGC-TCGG-CCTT-A--------------------T--AAAT--GATAAATG--TTCATT-------T-AATG-TACTCT----GGTGT-T-GTTTTTA-TTGC--AATT--GAA--GCTCTTTGTGCGATAAA------------------A-TGC-A-A--CGTAA----GTAT----AATT--ATGA-AAC-GCAC-T--TTGTACACA-T-GCGATCACAAGATT-A--TGAGAC-T-TT--AACGAA---AAAATTATT-TTAAAATGGGGA-GTATAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAA-----AAAAa
gi|6 : ggttctgctaAAAGACAATAAGCAAATATAAGGAA-CAATAAGTAAC-A-G-TAAtcaggagattttaatgatgagaaaataatcggtgatagtaataaaaaagttgagttttcatttcttactgttacttattgttccttatatttgcttattgtcttttagtgttacc
gi|9 : ggttctgctaaaagacaataagcaagtctaagtaacaataagtaacaataagcaacaatatttaactatttagggctatttacatatcatttgagcataggaatggataaaataaaaaacaaatctaagactagcgatttgaacattgccggctgacctggagctggtctgtgtatcgttcgggggtgtaagtagtttcggccttttttaaagtcgacccctagttcgctcggccttataaatgataaatgttcatttaatgtactctggtgttgtttttattgcaattgaagctctttgtgcgataaaatgcaacgtaagtataattatgaaacgcactttgtacacatgcgatcacaagattatgagactttaacgaaaaaattattttaaaatggggagtatagcgtaaaatcaggagattttaatgatgaaaaaatcaggagattttaatgatgagaaaataatcggtgatagtaataaaaaagttgagttttcatttcAAAGACAATAAGCAAAAATAAGTAA-CAATAAG--ACTA-C-TAAA--AGACAATAAGCATTGA--AGTCTAAGTA--T--TACAtagtgttacc
gi|11 : tttatctaatgtactctgttgttgtttttgttgctctttgtgcgaaaaacccgggtgttaaaatgcaccgtaagtataattatcaaacacactttgaacacgtgcaatgaagattgatgagactgttaatagagaagattattgtaacgaggagtttgcataaatcaggagatttttgatgagaaatgatgagaaaatcggcgatagtgactgaacaacctttttttttaaacccaagactcccgaaagttgaggtgaccgaaatacctaatgactgtacatgtcttgccttggttaaatctggtaaatgcttttttaatatacacattcgttatatatttgacattttagcagtcttatAAAGACAATAAGTAACAAGAAGTAA-CAATAAG--ACTA-C-TAAA--AGACAATAAGCAAtagtgtatc
gi|14 : agtataatttaatcaaatgcactttgaacacatgcgatcgcacgattatgagactttaatgaagagaagattattgtaaaccgaggagtttagcgtaaaatcaggagattttaatgatgagaaaacaattggcgatggtgactgcaaacccaacgactcccgaaaatcgaggtgacccgaaatgccctaaatgactgtacatgtcttgtccctggctaaacccctggtaaatgcttttctaatatcacacattcattacttattgacttttagcagtcttattgtaatacatagacAAAGACAATGCGCAA------GT---C--TAAGTAAC-A-A-TAAA--TACCAATAAGTAACGA-TATT-TAACTAT-T--TACAGC--TATTTACA-TTTCA-TT-AG-AGCATAGG-AATGGAT-AAAATATTTTTTTAAAAA----TC-T--AG---C-GATT-TGTG-T-GAATTT--GT-A-ACC-AG-ATAACCAT----GAAATTTTAACATTA--CCGG--CC-GAC---C-T-tagtgtgtcc
gi|16 : tctactaAAAGACAATAAACAACAATGAGTAA-CAATAAGTAAC-A-A-TAAGACTACTAA-AAG--ACAA-TAAgggnagcgatttgtgtgaatttgtgaccagataactgtggaaattttaacattaccggctgacctggggctggcctgtgtattgatcgggggtgcaagtagtttccaccttttttaaaatcggc
gi|31 : ttattgtatgtcttgcccctggctaaaccgtgctaaatccctggtaaatgcttttttgatattacacattcgttacttattgactttttgcagtcttattgtaatacttagacttgcAAACACAATAAGCAACAATAAGTAA-CAATAAGtagtgtgtcc
gi|24 : tAAAGACAATAAGCAAGTATAAGTAA-CATTAAGTAAC-A-A-TAAtagtgtgacc
gi|28 : tcgagtaacttttcatttcAAAGACAATAAGCAACAA----------ATAAGCAAC-A-A-TAAG--TAACAATAGTTTACAA-TAtagtgttaccc
gi|3 : ggatctactaACAAGAAG-AACAATAAGTAA-CA-TAAGCAACGA-A-TAAA--TAC-AATAAGTAACGA-TATT-TAATTAA-T--TAAAGCCATATTTACA-TATCA-TT-AG-AGCATAGA-ATTGGAT-AAAATAT-------AAAACAAAAT-T--AG---T-GATTCTGTGAT-AAATTT--GTGA-ACC-AG-CTAACCGT---GGAAATTTCAACTTTC--CC-----C-GACCGAC-T-TGCAGC--GGCTTACCGTTATC-ATC-----------------A----GG-TGCC-AAGTACT--CGG-TGAAAG--TTTC-GC-C--TTT-TTCAAAGTTCGACTCCC---CT--T-CGC-TCGG--CTT-AAGTATTTC--TTG-ACTTA-TCAAAATT-AATAAATG----TATT-------T-AATA-TACTCT----G-TGT-T-G-TTTTA-TTAC--AATT--GAA--GC-TCTTG-GCGA-AAACCCGAGTCGTA--AA---A-TGC-A----CGCAAAACTGTA-----AATT--AC---AAC-GCAC-CGGTTGAACACTGTAGCGATCACACG-TT-A--TGAGAC---TT--AAT
gi|5 : taaaaaccaataagccaAACA-TAAGTAAACAATAA-CAAC-AGA-TAAA--TACCAATAACTAACGA-TATT-TAACTATATAATACAGC--TATTTACA-TATCA-TT-AG-AGGATAGG-A-TGGAT-AAACTAT-------AAAACAATTCGT--AG---C-GATT-TGTG-T-AAATTT--GT-A-AC------------------AAATTTCAAC-TTG--CC-GG-TC-CAC---C-T-TG-AGTTTGGCTTA-CG-TATCGATT-----------------A--G-G--TG-C-AAGTACAAAC-G-T---AG--TTTC-GG-CC-TTT-TTCAAAGT-CTGCTCCT--ACT--TTCGC-TCGGGCCTT-AAGT-TTTT--TT-TAATTATC--AAAT--AATAAATA--TT-ATC-------T-AATG-TACTCT----GTTGT-T-GTT-------GC--AATTT-GAA--GCCTTT-GTGCGATAAACCCGGGT-GTT--AA---A-TAT-A-CAACGTAA----GTGT----AATT--ATCA-agcttatattatgcttttatttagaatatttcaaatttaacgtatggatatatagaacataccttgttggacgtgactgccaacaaccttttcttttcttttacatgtgaataaacccaacaaccgagaaagtcgaggcgacccgaataccctgcgactcccggtaaatgctttttttaatatcacaacattcgttacttattgccttatttagcatcttatt
gi|2 : atctactctatggagaaaccatatcaaacggtaccgtcccagttcatagtttcaaaacaaacgcggaccgcacttatttgtgtcaatataaatttaaattttaaaaaaaaaagagaggggggggggtatcgccgtaaaaaatggggggggtttgggtcgatcttctaaaaaAGTAA-CAATAAGCAAC-A-A-TAAA--TACAAATAATAAACAAATATT-TAACTAA-T--TACAGC--TATTTACAATAT-A-TT-AG-AGCATAGG-TATGGATTAAAATAT-------AAAACAAATC-T--AG---C-GATT-TGTG-C-AAGTTT--GT-A-ACC-AG-CTAACCGT---GAAAATTTCAACATTG--CCAG--CC-GAC---C-T-TG-AGCT-GGCCTA-CG-CATCGATC-----------------GC-G-GG-TG-C-AAGTACA--C-G-T---AG--TTTCAGC-C--TTT-TTCAAAGT-CGGCTCCTGAAGTAGG-AGT-TCGG-CCTG-AAAT-TTTT-----TAAGTATC--AAATT-AATAAATGT-TTTATT-------C-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AATT--GAA--GCTCTTTGTGCGA--------------T--AA---A-TGC-A-C--CGTAA----GTAT----AATT--ATCA-AAC-GCAA-T--TTGAACACG-T-GCAATCCCAAGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATGATT-TTAAACCGGGGA-GTTTAGCATAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCT-AT--AGTGATAAA-AAAGTCGAGTTTTCATTTCATCATTTCACTAGTGTCC-------------AGA-TCAATGACTCGAG-AAAGTCGAAG-TGACCC-GAGAggagattgtaatgatgagaaaa
gi|28 : A-CAATAAGCAAC-A-AATAAG--CAACAATAAGTAACAA-TAGT-TTACAAT-aaccctaaatgactgtacatgtcttgcccctggctaatcccctggtaaatgcttgaatttaatatcacacaatcgttactttaaatattgtcttttagtagtcttattgttgcttattgtcttttag
gi|13 : ggatctactaaaagATAAGCAAC-A-A-TGAA--TACCAATAAGTAACAA-TATT-TAACTA-------------------CA-TATCA-TT-AG-AGCATAGA-AATGGAT-AAATTAT-------AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATTG--CC-GA-CC-GAC---C-T-TG-AGCT-GGCCTA-CG-TATCGATCGGCCCCCGCCCGTGCTGG--G-GG-TG-CAAAGTACA--C-G-T---AG--TTTC-GGCC--TTT-TTCAAAGT-CGGCTCCT--ACT--T-CAC-TTAG-CCTT-AAGT-TTTT-----TAATTATC--AAATT-AATAAATG--TTTATTTAATCAAT-AATG-TACTCTATTAATTGT-T-GTTTTTG-TTGC--AATT--GAA--GCTa
gi|1 : A--TACCAATAAGTAACGA--AATCTAACTAT-T--TACAGC--TATT-ACA-TATCA-TT-AG-AGGATAGG-AATGGAT-AAAATAT-------ATAACAATTC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG--TAACCGT---GGAAATTTCAACATTG--CC-GG-TC-GAC---T-TATG-AGCT-GGCTTA-CG--ATCGATT-----------------A--G-GGGTG-C-AAGTACA--C-G-T---AG--TTT--GA-CCTTTT-TTCAAAGT-CAGCTCCT--ACT--T-CGC-TCCG-CCTT-AAGT-TTTT------AATTATC--AAATT-A-TAA-TG--TTTATT-------T-AATG-TACTCT----GTTGT-TTGTTTTTG-TTGC--AATT--GAA--GCTCTTTGTGCGATAAA-CCGGGT-GTTA-AA---A-TAC-A-C--CGCAA----GTAT----AATT--ATCA-AAC-GCAC-T--TTGAACACG-T-GCGATTGCACGATT-A--TGAGAA-C-TT--AATc
gi|19 : tttgcaacaccgcgttgctgcaacatgtagaataaacacgagtacgcggtacaattatctactccatggagaaaccatatcaaaacggagtaaccgcccagttcatagttcaacaaaccgcaaccgcaattatttttgtcaatataattttccatatataaaattaaataaaaaaaaaaaaaaagagagggggggggggtatcgccgtgaaaaaaaagaggggggttggggttggttgggttggtcggatctctaaaagacatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-TATT-TAACTAT-T--TACAGC--TATTTAC--TATCA-TTAAG-AGGATAGG-AATGGAT-AAAATATAA-----AAAACAAATC-T--AGAGTG-GATT-TGTG-T-AAATTT--GT-ACACCAAG-CTAACCGT---GGAAATTTCAACATTG--CC-G--tttcaaaaaaggggg
gi|10 : -TATT-TAA-TAT-T--TACAGC--TATTTACA-TATCAATT-AGGAGGATAGGGAATGGAT-AAAATAT-------AAAACAAATC-TAGAG---CAGATT-TGTGATAAAATTTGAGTAA-ACC-AG-CTAACCGTGTGGGAAATTTCAACACTGCACC-GGACC-GAC---C-T-TG-AGCT-GGCTT--CG-TATCGATT-----------------AGGG-GG-TG-C-AAGTACA--C-GAT---AG--TTTC-GG-C--CTTATTCAAAGT-CGGCTCCTTAACT--T-CGCTTCGG-CTCA-AAGT-TTT------TAATTATC--AAATT-AG-AAATG--TTTATT-------A-ATTG-TACTCT----TTGGTAT-GTTTTTG-TTGCCAAATT--G-A--GCTCTTTGTG-G-------CGGGT-TTT--AATATA-TGCAA-C--CGNNN----NNNN----NNNN--NNNN-NNN-NNNN-N--NNGAA
gi|14 : --AG---C-GATT-TGTG-T-GAATTT--GT-G-ACC-AG-ATAACTGT---GGAAATTTTAACATTA--CC-G--GCTGAC---C-T-GG-GGCT-GGCCTG-TG-TATTGATC-----------------G--G-GG--------GTGCA--A-G-T---AG--TTTC-CACC--TTT-TTTAAAAT-CGGCacatgt
gi|7 : tctactaaaagacaatgcgcaagtctaagtaacaataaataccaataagtaacgatatttaactatttacagctatttacatttcattagagcataggaatggataaaatatttttttaaaaatctagcgatttgtgtgaatttgtaaccagataaccatgaaattttaacattaccggccgacctgggn-GATT-TGTG-T-AA-TTT--GT-A-ACC-AGACT-ACCGT---GG-AATTTCAACATTG--CCGG--CC-GAC---C-T-TG-AGCT-GGCTTA-CA-TATCGATC-----------------AAGG-GG-TG-T--AGTACAG-C-G-T---AGTTTTTC-G--C--TTT-TTCAAAGTCCGGCTCCT--ACT--T-CGC-TCGG-TCTT-AAGT-TTTT--TCATTAT---C--AAATTAAATAAATG---TTATT-------TAAATGTTACTCT----GTTGT-T-GTTTTTGTTTGT--AATT--GAATGGCTCTTTGTGTGATAAACCCGGGT-GTTAAAA---A-TGC-ATC--CGTAA----GTAT----AACTA-ATCA-AAC-GCAC-T--TTGAACACG-T-GC-ATCGCACGATT-A--TGAGTTGT-TT--AAGGAAGAGAAGATTATT-TTAAACCGGGGA-GTTTAGCGT-AA-------ATCGAGAGAGTTGTAT--------GATGAAGAAAATGAATGAG-----AAAACA-ATC-GGCG-ATTAAGTGATA
gi|18 : ag--TTT-TCCAAAGT-CGGCTCCT--ACT--T-CGT-TCGG-CCTTAAAGT-TTT------TAATTATC--AAATT-AATAAATGGTTTTATT----------ATG-TACTCT----GTTG--T-GTTTTTG-TTGC--AATTTGAAA--GCCCTTTGTGCGAT-AACCCGGGT-GTT----------------------A----GTAT----AATT--ATCA-AACGGCACTT--TTGAACACG-T-GCGATCGCaattaaaaaagtcgagttttcatttcataaaacatttcgcaagtgtcccgatcatcagaaattcgttacttattgacctttaagcagtccttattgtaataattcgacttgcttattgtcttttagtag
gi|9 : ct--TTTATC-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC---------------TCTTTGTGCGAAAAACCCGGGT-GTT--AA---AATGC-A-C--CGTAA----GTAT----AATT--ATCA-AAC-ACAC-T--TTGAACACG-T-GCAAT-G-AAGATTGA--TGAGAC-TGTT--AAT--AGAGAAGATTATT-GTAA--CGAGGA-GTTT-GCAT-AA-------ATCAGGAGATTT---TTGATGAGAAATG----------ATGAG-----AA---A-ATC-GGCG-AT--AGTGACTG--AA---CAA-----CCTTT--TT-TT-------T---T-------------AAACCCAA-GACTCCCG-AAAGTTGAGG-TGA-CC-GAAA
gi|11 : A----GTAT----AATTTAATCA-AAT-GCAC-T--TTGAACACA-T-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-GTAAACCGAGGA-GTTTAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATT-GGCG-AT--GGTGACTGC---------------------------------------------------AAACCCAACGACTCCCG-AAAATCGAGG-TGACCC-GAAAtacctaatgactgtacatgtcttgccttggttaaatctggtaaatgcttttttaatatacacattcgttatatatttgacattttagcagtcttattgtaatacttagacttcaatgcttattgtcttttagtagtcttattgttacttatttttgcttattgtcttttagtgtatc
gi|15 : T----AATT--ATCATAAA-GCAT-T--TTGCACACA-T-GCGAT-GCAAGAT--A--TGAGAG-T-TT--AATGAAGAGAAGA-TATTGGTAAATCGGGGA-GTTTTGCGTAAA-------ATCAGGAGATTT---T--------AATGAGA-------ATGGGGGAAAAAGAAA-ATCAGGAG-AT--AATAAtgccctaaatgactgtacatgtcttgtccctggctaaacccctggtaaatgcttttctaatatcacacattcattacttattgacttttagcagtcttattgtaatacatagacttgcttattgtcttttagtagtcttattgttacttcttgttacttattgtcttttagtgtgtcc
gi|17 : tgcaagataaaaaatgtttatATC-CACGATT-AAATGAGAC-T-TTTTAATGAAGAGAAGATTATT-GTAAACCGAGGAAGTTTAGCGTAAA-------ATCAG---ATTT---T--------AATG----------ATGAG-----AAAACATATC-GGCG-AT--AGTGACTGC-AA---CAA-----TCTTT--TC-TT-------TTTCT-------------AAACCCAACGACTCCCG-AAAGTCGAGGTTAACCC-GAAAttggcgatcaatgagtaataaaaaagtcgagttttcattttctgttgttgcttattgtaagttacttagacttgcttattggtcttttagagtgttaccc
gi|20 : ccATGAAGAGAAGATTATT-TTAAACCGGGGA-GATTAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ACAAG-----AAAATG-A----------------ACAAC-AAT--TGA-----AATTT--TT-TT-------TATaccctaaatgg
gi|5 : AACGTAAGTGTAATTATCAGGAGATTG---T--------AATG----------ATGAG-----AAAA
gi|23 : atctactctatggagaaaccatatcaaacggtaccgtcccagttcatagtttcaaaacaaacgcggaccgcacttatttgtgtcaatataaatttaaattttaaaaaaaaaagagaggggggggggtatcgccgtaaaaaatggggggggtttgggtcgatcttctaaaaaaacataagtaaacaataacaacagataaataccaataactaacgatatttaactatataatacagctatttacatatcattagaggataggatggataaactataaaacaattcgtagcgatttgtgtaaatttgtaacaaatttcaacttgccggtccaccttgagtttggcttacgtatcgattaggtgcaagtacaaacgtagtttcggcctttttcaaagtctgctcctactttcgctcgggccttaagttttttttaattatcaaataataaatattatctaatgtactctgttgttgttgcaatttgaagcctttgtgcgataaacccgggtgttaaatatac-ATC-GGCGGAT--AGTGAT-GC-AA---CAG-----CCTTT--TC-TT-------T-TCT-------------AAACCCAACGA-TCCCGCAAAGTCGAGG-TGACCCTGAAA
gi|3 : tGTGACTGCCAA---CAA-----CCTTT--TC-TT-------T-TCTTTTACATGTGAATAAACCCAACAAC-CGAG-AAAGTCGAGG-CGACCC-GAAtgacc
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CTCGCCCCTTCCTTCTTCATAATGCTACCACCACCACCATTCTTTACAACTTATTGCAGTGAACACAGACGCACCATTTTTGCTTTTTTAATATTTATTCTTGCAGAAGGATTTTCAACGATATTCTGCGAAAATGAAGTCCCATTTCTACTCTTATTTCCTCATAAATATCAACAAAGTTGTCGCATCCTTTGCAACACCGCGTTGTTTCAACATGTTCGTAAATAAACTCGAATACGTCGTTGGAGATCTAGATACTGAAGCGGAGAAACCATATCAAACGTGATGCAACCATTTCAATGTGCAATTAGGTGCGGCTGTAATTATTTGTGTCAGTCTCTTTTTCAATGTATGAA
Unaligned ( gi|21 ): AACCATATCAAACGTGATGCAACCATTTCAAAGTGCAATTAGGCGCGGCTGTCATTATTTGTGTCAGTATCTTTTTCATGTATGAAATTAAG
Unaligned ( gi|22 ): ACCATATCAAACGTGATGCAACCATTTCAATGTGCAATTAGGTGCGGCTGTAATTATTTGTGTCAGTCTCTTTTTCATGTATGAAATTAAG
Unaligned ( gi|25 ): TTATTATCACACGTTCGTTACTTTCGTGTCTTTTAGTAGTCTTTAGTTATTGTTGCTTATTGTCTTTTA
Unaligned ( gi|26 ): TTTGCTTATTGTCTTTACAGTAGTCTTATTGTGCCTTATTGTTATTATTGTCTTTTAGTGTGA
Unaligned ( gi|27 ): CAACTTATTGCAGTCAAGACAGCGCACCATTCTTGCTGATATGTTTCTTGCAGAATGATTT
Unaligned ( gi|29 ): ATTCTCATAATATCTAACCTACGAAGTGTCGCATCCTTTGCAACACCGCATTGTTTCAAC
Unaligned ( gi|30 ): TCCTCAAAATTATCTACAAAGTGTCGCATTCTTTGCAACACCGCGCTGTGTCAACAAA
Alignments
lowQualScore : 111111111111 111111 2222 4444444444444444444 111111 11 11 11 111111 1111111 11 1111 1111111 1111111 11111111 2222222222 111111 11111 44444444444444444444444444444444444444
lowQualScore : 8888 22 2 2 99 6 2 22 222222222222 2 2 77777777 2 33 3 99 33 44 3 3 3 3 3 3 3 000000 55 0 3 44 555 3 3 6 3 44 777 3 44 0 555 0 44 5555 555 3 3 3 3 3 3 5555555555555555555 3 3 3 3 222222 3 666 55 99 11 3 3 3 00 55 3 3 3 3 44 111111 3 3 77 0 0000000 3 3 7777 3 3 3 44 3 44 44 4 3 3 3 666 22 3 0000 7777 6666 44 3 3 3 3 44 3 3 1 3 55 444 55 55 3 0000000 0000000 7777 555 22222222 3333333333 88888 88888 8 555555 4 55 11 0 77777 77777777777777777777777777777777777777 5 5 5
lowQualScore : .... .. . . .. . . .. ............ . . ........ . .. . .. .. .. . . . . . . . ...... .. . . .. ... . . . . .. ... . .. . ... . .. .... ... . . . . . . ................... . . . . ...... . ... .. .. .. . . . .. .. . . . . .. ...... . . .. . ....... . . .... . . . .. . .. .. . . . . ... .. . .... .... .... .. . . . . .. . . . . .. ... .. .. . ....... ....... .... ... ........ .......... ..... ..... . ...... . .. .. . ..... ...................................... . . .
lowQualScore : 6666 99 1 1 11 3 1 99 888888888888 4 5 55555555 4 44 5 00 77 22 3 3 3 3 6 6 6 555555 00 3 6 66 888 1 1 2 1 22 000 1 66 3 444 4 22 8888 888 3 3 6 6 6 6 3333333333333333333 6 6 6 6 666666 6 444 00 33 22 3 3 3 00 00 6 6 6 6 66 111111 6 6 99 4 8888888 3 3 1111 3 3 3 66 3 66 66 5 6 6 6 444 33 6 0000 1111 5555 22 1 1 3 3 66 3 3 0 6 00 111 00 55 3 8888888 8888888 1111 888 11111111 8888888888 33333 33333 0 555555 0 55 22 7 00000 00000000000000000000000000000000000000 7 7 7
consensus : AAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGNATAGG-AATGGAT-AAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATTG--CC-GG-CCGAC---C-T-TG-AGCT-GGCCTA-CG-TATCGATC-----------------G-G-GG-TG-C-AAGTACA--C-G-T---AGTTT--CGG-C--TTT-TTCAAAG-TC-GGCTCCT--ACT--T-CGC-TCGG-CCTT-AAGT-TTTTTT-A--A-TTATC-AAATTAA-TAAATG--TTTATT-------TAA-TGT-ACTCT----GTTGT-T-GTTTTTGTT-GC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGGGT-GTT-AA---A--TGC-A-C--CGTAA----GTAT----AATT--A-TCA-AAC-GCAC-T--TTGAACAC-GT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-TTAAACCGGGGA-GTT-------TAGCGTAAA-------A----TCAGGAGATTT---T--------AATG----------ATG-----AG-----AAAACA-ATC------GGCG-AT--AGTGACTGCAA---CAACCTTT-------TCTTT-T--C-------------TA------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAA
Reference ( family-2506 ) : AAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGCATAGG-AATGGAT-AAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATTG--CC-G--CCGAC---C-T-TG-AGCT-GGCCTA-CG-TATCGATC-----------------G-G-GG-TG-C-AAGTACA--C-G-T---AGTTT--CGG-C--TTT-TTCAAAG-TC-GGCTCCT--ACT--T-CGC-TCGG-CCTT-AAGT-TTTTTT-A--A-TTATC-AAATTAA-TAAATG--TTTATT-------TAA-TGT-ACTCT----GTTGT-T-GTTTTTGTT-GC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGGGT-GTT-AA---A--TGC-A-C--CGTAA----GTAT----AATT--A-TCA-AAC-GCAC-T--TTGAACAC-GT-GCGATCGCANGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-TTAAACCGGGGA-GTT-------TAGCGTAAA-------A----TCAGGAGATTT---T--------AATG----------ATG-----AG-----AAAACA-ATC------GGCG-AT--AGTGACNGCAA---CGACCTTT-------TCTTT-T--C-------------TA------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAA
gi|1 : A--TAC-------CAATAAGT-AACG-A-A------AT-CTA--ACTAT-T--TACAGC--TATT-ACA-TATCA-TT-AG-AGGATAGG-AATGGAT-AAAATA------T--ATAACAATTC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG--TAACCGT---GGAAATTTCAACATTG--CC-GG-TCGAC---T-TATG-AGCT-GGCTTA-CG--ATCGATTA----------------G-G-GG-TG-C-AAGTACA--C-G-T---AGTTT---GA-CCTTTT-TTCAAAG-TC-AGCTCCT--ACT--T-CGC-TCCG-CCTT-AAGT-TTTT---A--A-TTATC-AAATTA--TAA-TG--TTTATT-------TAA-TGT-ACTCT----GTTGT-TTGTTTTTGTT-GC--AA-TT--GAA--GCTCTTTGTGCGATAAA-CCGGGT-GTTAAA---A--TAC-A-C--CGCAA----GTAT----AATT--A-TCA-AAC-GCAC-T--TTGAACAC-GT-GCGATTGCACGATT-A--TGAGAA-C-TT--AAT
gi|10 : tttgcaacaccgcgttgctgcaacatgtagaataaacacgagtacgcggtacaattatctactccatggagaaaccatatcaaaacggagtaaccgcccagttcatagttcaacaaaccgcaaccgcaattatttttgtcaatataattttccatatataaaattaaataaaaaaaaaaaaaaagagagggggggggggtatcgccgtgaaaaaaaagaggggggttggggttggttgggttggtcggatctctaaaagacatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-T------AT-TTA--A-TAT-T--TACAGC--TATTTACA-TATCAATT-AGGAGGATAGGGAATGGAT-AAAATA------T--AAAACAAATC-TAGAG---CAGATT-TGTGATAAAATTTGAGTAA-ACC-AG-CTAACCGTGTGGGAAATTTCAACACTGCACC-GGACCGAC---C-T-TG-AGCT-GGCTT--CG-TATCGATTAG---------------G-G-GG-TG-C-AAGTACA--C-GAT---AGTTT--CGG-C--CTTATTCAAAG-TC-GGCTCCTTAACT--T-CGCTTCGG-CTCA-AAG---TTTTT-A--A-TTATC-AAATTAG--AAATG--TTTATT-------AAT-TGT-ACTCT----TTGGTAT-GTTTTTGTT-GCCAAA-TT--G-A--GCTCTTTGTG-G-------CGGGT-TTT-AATATA--TGCAA-C--CGNNN----NNNN----NNNN--N-NNN-NNN-NNNN-N--NNGAA-AC-AT-Gtttcaaaaaaggggg
gi|11 : A----GTAT----AATTTAA-TCA-AAT-GCAC-T--TTGAACAC-AT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-GTAAACCGAGGA-GTT-------TAGCGTAAA-------A----TCAGGAGATTT---T--------AATG----------ATG-----AG-----AAAACA-ATT------GGCG-AT--GGTGACTGC--------------------------------------------A------AACCCAACGACTCCCG-AAAATCGAGG-TGACCC-GAAAt
gi|11 : AAAGACAATAAGTAA--C-AAGAAGTA--A-C-AATAAG---ACTA-C--TAAA--AGA-------CAATAAGC-AAtgccctaaatgactgtacatgtcttgtccctggctaaacccctggtaaatgcttttctaatatcacacattcattacttattgacttttagcagtcttattgtaatacatagacttgcttattgtcttttagtagtcttattgttacttcttgttacttattgtcttttagtgtgtcc
gi|13 : agtataatttaatcaaatgcactttgaacacatgcgatcgcacgattatgagactttaatgaagagaagattattgtaaaccgaggagtttagcgtaaaatcaggagattttaatgatgagaaaacaattggcgatggtgactgcaaacccaacgactcccgaaaatcgaggtgacccgaaatgccctaaatgactgtacatgtcttgtccctggctaaacccctggtaaatgcttttctaatatcacacattcattacttattgacttttagcagtcttattgtaatacatagacATAAG-CAAC-A-A--TGAA--TAC-------CAATAAGT-AACA-A-T------AT-TTA--ACTA-------------------CA-TATCA-TT-AG-AGCATAGA-AATGGAT-AAATTA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATTG--CC-GA-CCGAC---C-T-TG-AGCT-GGCCTA-CG-TATCGATCGGCCCCCGCCCGTGCTGG-G-GG-TG-CAAAGTACA--C-G-T---AGTTT--CGGCC--TTT-TTCAAAG-TC-GGCTCCT--ACT--T-CAC-TTAG-CCTT-AAG--TTTTTT-A--A-TTATC-AAATTAA-TAAATG--TTTATTTAATCAATAA-TGT-ACTCTATTAATTGT-T-GTTTTTGTT-GC--AA-TT--GAA--GCTCtagtgtgtcc
gi|14 : AAAGACAATGCGCAA---------GT-----C---TAAG-TAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TTTCA-TT-AG-AGCATAGG-AATGGAT-AAAATATTTTTTT--AA---AAATC-T--AG---C-GATT-TGTG-T-GAATTT--GT-A-ACC-AG-ATAACCAT----GAAATTTTAACATTA--CCGG--CCGAC---C-T-
gi|14 : tctacta--AG---C-GATT-TGTG-T-GAATTT--GT-G-ACC-AG-ATAACTGT---GGAAATTTTAACATTA--CCGG--CTGAC---C-T-GG-GGCT-GGCCTG-TG-TATTGATCG----------------G-G-GG-TG-C-AAGTA------G-T-----TTC--CAC-C--TTT-TTTAAAA-TC-GGCgggnagcgatttgtgtgaatttgtgaccagataactgtggaaattttaacattaccggctgacctggggctggcctgtgtattgatcgggggtgcaagtagtttccaccttttttaaaatcggc
gi|15 : tctactaaaagacaatgcgcaagtctaagtaacaataaataccaataagtaacgatatttaactatttacagctatttacatttcattagagcataggaatggataaaatatttttttaaaaatctagcgatttgtgtgaatttgtaaccagataaccatgaaattttaacattaccggccgacctgggnT----AATT--A-TCATAAA-GCAT-T--TTGCACAC-AT-GCGAT-GCAAGAT--A--TGAGAG-T-TT--AATGAAGAGAAGA-TATTGGTAAATCGGGGA-GTT-------TTGCGTAAA-------A----TCAGGAGATTT---T--------AATGAGA-------ATG-----GGGGAAAAAGAAA-ATCA-----GGAG-AT--AATAATTG
gi|16 : tgcaagataaaaaatgtttatAAAGACAATAAGCAA--G-TCTAAGTATTA-C-AATAAGACTGC-A-A--AAAG--T---------CAATAAGT-AACGAA-T------GT-GTA--A-TAT-gcgatcaatgagtaataaaaaagtcgagttttcattttctgttgttgcttattgtaagttacttagacttgcttattggtcttttagagtgttaccc
gi|16 : ttattgtatgtcttgcccctggctaaaccgtgctaaatccctggtaaatgcttttttgAAAGACAATAAACAA--C-AATGAGTA--A-C-AATAAG-TAAC-A-A--TAAGACTACTAAAAGACAATAAGC-AA------------GT-CTA--AGTA--T--TACAtagtagtcttattgttacttattgttactcattgttgtttattgtcttttagtgtgtcc
gi|17 : ttattgtatgtcttgcccctggctaaaccgtgctaaatccctggtaaatgcttttttgatattacacattcgttacttattgactttttgcagtcttatATC-CACGATT-AAATGAGAC-T-TTTTAATGAAGAGAAGATTATT-GTAAACCGAGGAAGTT-------TAGCGTAAA-------A----TCAG---ATTT---T--------AATG----------ATG-----AG-----AAAACATATC------GGCG-AT--AGTGACTGCAA---CAATCTTT-------TCTTT-TT-C-------------TA------AACCCAACGACTCCCG-AAAGTCGAGGTTAACCC-GAAAtagtgtgtcc
gi|18 : cc--TTT-TCCAAAG-TC-GGCTCCT--ACT--T-CGT-TCGG-CCTTAAAG---TTTTT-A--A-TTATC-AAATTAA-TAAATGGTTTTATT---------A-TGT-ACTCT----GTTG--T-GTTTTTGTT-GC--AA-TTTGAAA--GCCCTTTGTGCGAT-AACCCGGGT-GTT----------------------A----GTAT----AATT--A-TCA-AACGGCACTT--TTGAACAC-GT-GCGATCGCaccctaaatgg
gi|19 : ct-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTAC--TATCA-TTAAG-AGGATAGG-AATGGAT-AAAATA------TAAAAAACAAATC-T--AGAGTG-GATT-TGTG-T-AAATTT--GT-ACACCAAG-CTAACCGT---GGAAATTTCAACATTG--CC-G--
gi|2 : AGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------AAATAATA-AACA-AAT------AT-TTA--ACTAA-T--TACAGC--TATTTACAATAT-A-TT-AG-AGCATAGG-TATGGATTAAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-C-AAGTTT--GT-A-ACC-AG-CTAACCGT---GAAAATTTCAACATTG--CCAG--CCGAC---C-T-TG-AGCT-GGCCTA-CG-CATCGATC-----------------GCG-GG-TG-C-AAGTACA--C-G-T---AGTTT--CAGCC--TTT-TTCAAAG-TC-GGCTCCTGAAGTAGG-AGT-TCGG-CCTG-AAA--TTTTTT-A--A-GTATC-AAATTAA-TAAATGT-TTTATT-------CAA-TGT-ACTCT----GTTGT-T-GTTTTTGTT-GC--AA-TT--GAA--GCTCTTTGTGCGA--------------T-AA---A--TGC-A-C--CGTAA----GTAT----AATT--A-TCA-AAC-GCAA-T--TTGAACAC-GT-GCAATCCCAAGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATGATT-TTAAACCGGGGA-GTT-------TAGCATAAA-------A----TCAGGAGATTT---T--------AATG----------ATG-----AG-----AAAACA-ATC------GGCT-AT--AGTGATAAAAAAGTCGAGTTTTCATTTCATCATT-TCAC-------------TAGTGTCCAGATCAATGACTCGAG-AAAGTCGAAG-TGACCC-GAGA
gi|2 : AAAGACAATAAGCAA--C-AATAAG----A-CTACTAAA-AGAC-A-A--TATT--TA------------AAGT-AACG-A-TTGTGTGATATTA--A--AT-T--CA-AGC---ATTTACaaccctaaatgactgtacatgtcttgcccctggctaatcccctggtaaatgcttgaatttaatatcacacaatcgttactttaaatattgtcttttagtagtcttattgttgcttattgtcttttag
gi|20 : agtaacaataagcaacaataaatacaaataataaacaaatatttaactaattacagctatttacaatatattagagcataggtatggattaaaatataaaacaaatctagcgatttgtgcaagtttgtaaccagctaaccgtgaaaatttcaacattgccagccgaccttgagctggcctacgcatcgatcgcgggtgcaagtacacgtagtttcagcctttttcaaagtcggctcctgaagtaggagttcggcctgaaattttttaagtatcaaattaataaatgttttattcaatgtactctgttgttgtttttgttgcaattgaagctctttgtgcgataaatgcaccgtaagtataattatcaaacgcaatttgaacacgtgcaatcccaagattatgagactttaatgaagagaagatgattttaaaccggggagtttagcataaaatcaggagattttaatgatgagaaaacaatcggctatagtgataaaaaagtcgagttttcatttcatcatttcactagtgtccagatcaatgactcgagaaagtcgaagtgacccgagaaaccctaaatgactgtacatgtcttgcccctggctaatcccctgATGAAGAGAAGATTATT-TTAAACCGGGGA-GAT-------TAGCGTAAA-------A----TCAGGAGATTT---T--------AATG----------ACA-----AG-----AAAAtag
gi|23 : -ATC------GGCGGAT--AGTGA-TGCAA---CAGCCTTT-------TCTTT-T--C-------------TA------AACCCAACGA-TCCCGCAAAGTCGAGG-TGACCCTGAAAtgaacaacaattgaaattttttttat
gi|24 : tAAAGACAATAAGCAA--G-TATAAGTA--A-C-ATTAAG-TAAC-A-A--TAAtgacc
gi|26 : tcgagtaacttttcatttcAAAGACAATAA-TAA--C-AATAAGGC--A-C-AATAAGACTAC-T-G--TAAA--GA--------CAATAAGC-AAtagtgttaccc
gi|28 : tAAAGACAATAAGCAA--CAAATAAGCA--A-C-AATAAG-TAAC-A-A--TAtagtgtga
gi|28 : ggatctactaAATAAGCAA--C-AATAAGTA--A-C-AATAGT-TTAC-A-A--TAgtttacaata
gi|3 : ggatctactaaaagacaataagcaacaACAAGAAG-AA--C-AATAAGTA--A-C-A-TAAG-CAACGA-A--TAAA--TAC--------AATAAGT-AACG-A-T------AT-TTA--ATTAA-T--TAAAGCCATATTTACA-TATCA-TT-AG-AGCATAGA-ATTGGAT-AAAATA------T--AAAACAAAAT-T--AG---T-GATTCTGTGAT-AAATTT--GTGA-ACC-AG-CTAACCGT---GGAAATTTCAAC-TTT--CC----CCGACCGAC-T-TGCAGC--GGCTTACCGTTATC-ATC-------------------A-GG-TGCC-AAGTACT--CGG-TGAAAGTTT--CGC-C--TTT-TTCAAAGTTC-GACTCCC---CT--T-CGC-TCGG--CTT-AAGTATTTCTT-G--ACTTATCAAAATTAA-TAAATG----TATT-------TAA-TAT-ACTCT----G-TGT-T-G-TTTTATT-AC--AA-TT--GAA--GCTC-TTG-GCGA-AAACCCGAGTCGTA-AA---A--TGC-A----CGCAAAACTGTA-----AATT--A-C---AAC-GCAC-CGGTTGAACACTGTAGCGATCACACG-TT-A--TGAGAC---TT--AAT-------AGCTTATA-TTATGCT-------TT-------TA-TTTAGA-------ATATTTCA----AATT---T--------AACGT---------ATGGATATAT-----AGAACATACCTTGTTGGACG-TG--ACTGCCAACAA------CCTTT-------TCTTT-T--CTTTTACATGTGAATA------AACCCAACAAC-CGAG-AAAGTCGAGG-CGACCC-GAA
gi|31 : taaaaaccaataagccaAAACACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-taccctgcgactcccggtaaatgctttttttaatatcacaacattcgttacttattgccttatttagcatcttatt
gi|4 : tAAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AA-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGGATAGG-AATGGAT-GAAATA------T--AAAACAATTC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATTG--CC-G--TCGAC---C-T-TG-AGCT-GGCTTA-CG-TATCGATT-----------------A-G-GG-TG-C-AAGTACA--C-G-T---AGTTT--CGA-C--TTT-TTCAAA---C-GGCTCCT--ACT--T-CGC-TCGA-CCTT-AAGT-TTTTTT-ATAA-TTA-C-AAATTAA-TAAATG--TTTATT-------TAA-TGT-ACTCT----GTTGT-T-GTTTTTGTT-GC--AA-TC--GAA--GCTTTTTGTGCGATAAACCCGGGT-GTT-AA---A--TAC-A-C--CGTAA----GTAT----AATT--A-TCA-AAC-GCAC-T--TTGAACAC-TT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-GTAAATCGAGGA-GTT-------TAACGTAAA-------A----TCAGGAGATTT---T--------AATG----------ATG-----AG-----AAAACA-ATC------GGCG-AT--AGTGACAGCAA---CAACATTT-------TCTTTAT--C-------------TA------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAAtagtgtgacc
gi|5 : AA--C-A-TAAGTA--AAC-AATAA--CAAC-AGA--TAAA--TAC-------CAATAACT-AACG-A-T------AT-TTA--ACTATATAATACAGC--TATTTACA-TATCA-TT-AG-AGGATAGG-A-TGGAT-AAACTA------T--AAAACAATTCGT--AG---C-GATT-TGTG-T-AAATTT--GT-A-AC------------------AAATTTCAAC-TTG--CC-GGTCC-AC---C-T-TG-AGTTTGGCTTA-CG-TATCGATT-----------------A-G-G--TG-C-AAGTACAAAC-G-T---AGTTT--CGG-CC-TTT-TTCAAAG-TC-TGCTCCT--ACT--TTCGC-TCGGGCCTT-AAGT-TTTTTTTA--A-TTATC-AAAT-AA-TAAATA--TT-ATC-------TAA-TGT-ACTCT----GTTGT-T-GT------T-GC--AATTT--GAA--GC-CTTTGTGCGATAAACCCGGGT-GTT-AA---A--TAT-A-CAACGTAA----GTGT----AATT--A-TCA-
gi|5 : atctactctatggagaaaccatatcaaacggtaccgtcccagttcatagtttcaaaacaaacgcggaccgcacttatttgtgtcaatataaatttaaattttaaaaaaaaaagagaggggggggggtatcgccgtaaaaaatggggggggtttgggtcgatcttctaaaaaTAAACCCGGGT-GTTAAATATACAACGTAAGTGTAATTA----TCAGGAGATTG---T--------AATG----------ATG-----AG-----AAAAggagattgtaatgatgagaaaa
gi|6 : atctactctatggagaaaccatatcaaacggtaccgtcccagttcatagtttcaaaacaaacgcggaccgcacttatttgtgtcaatataaatttaaattttaaaaaaaaaagagaggggggggggtatcgccgtaaaaaatggggggggtttgggtcgatcttctaaaaaaacataagtaaacaataacaacagataaataccaataactaacgatatttaactatataatacagctatttacatatcattagaggataggatggataaactataaaacaattcgtagcgatttgtgtaaatttgtaacaaatttcaacttgccggtccaccttgagtttggcttacgtatcgattaggtgcaagtacaaacgtagtttcggcctttttcaaagtctgctcctactttcgctcgggccttaagttttttttaattatcaaataataaatattatctaatgtactctgttgttgttgcaatttgaagcctttgtgcgaAAAGACAATAAGCAA--G-TCTAAGTA--A-C-AATAAG-TAAC-A-A--TAA-------------------GC-AACA-A-T------AT-TTA--ACTAT-T--TAGGGC--TATTTACA-TATCA-TT-TG-AGCATAGG-AATGGAT-AAAATA------A--AAAACAAATC---------------------T-AAG----------ACT-AG-C-------------GATTTGAACATTG--CC-GG-CTGAC---C-T-GG-AGCT-GGTCTG-TG-TATCGTTC-----------------G-G-GGGTG-T-AAGTA-------------GTTT--CGG-CC-TTT-TTTAAAG-TC-GACCCCT--AGT--T-CGC-TCGG-CCTT-A--------------------T-AAAT-GA-TAAATG--TTCATT-------TAA-TGT-ACTCT----GGTGT-T-GTTTTTATT-GC--AA-TT--GAA--GCTCTTTGTGCGATAAA-----------------A--TGC-A-A--CGTAA----GTAT----AATT--A-TGA-AAC-GCAC-T--TTGTACAC-AT-GCGATCACAAGATT-A--TGAGAC-T-TT--AACGAA---AAAATTATT-TTAAAATGGGGA-GTA-------TAGCGTAAA-------A----TCAGGAGATTT---T--------AATG----------ATG-----AA-----AAAA
gi|6 : ggttctgctaAAAGACAATAAGCAA--A-TATAAGGA--A-C-AATAAG-TAAC-A-G--TAAG--AAA-------TGAAAACTCAACT---T------TT-TTATTACTAT-C--ACCGAT--TATTTTCT-CATCA-TT-AA-Atcaggagattttaatgatgagaaaataatcggtgatagtaataaaaaagttgagttttcatttcttactgttacttattgttccttatatttgcttattgtcttttagtgttacc
gi|7 : ggttctgctaaaagacaataagcaagtctaagtaacaataagtaacaataagcaacaatatttaactatttagggctatttacatatcatttgagcataggaatggataaaataaaaaacaaatctaagactagcgatttgaacattgccggctgacctggagctggtctgtgtatcgttcgggggtgtaagtagtttcggccttttttaaagtcgacccctagttcgctcggccttataaatgataaatgttcatttaatgtactctggtgttgtttttattgcaattgaagctctttgtgcgataaaatgcaacgtaagtataattatgaaacgcactttgtacacatgcgatcacaagattatgagactttaacgaaaaaattattttaaaatggggagtatagcgtaaaatcaggagattttaatgatgaaaaaatcaggagat-GATT-TGTG-T-AA-TTT--GT-A-ACC-AGACTA-CCGT---GGAA-TTTCAACATTG--CC-GG-CCGAC---C-T-TG-AGCT-GGCTTA-CA-TATCGATCAA---------------G-G-GG-TG-T-A-GTACAG-C-G-T---AGTTTTTCG--C--TTT-TTCAAAG-TCCGGCTCCT--ACT--T-CGC-TCGG-TCTT-AAGT-TTTTTC-A----TTATC-AAATTAAATAAATG--TT-ATT-------TAAATGTTACTCT----GTTGT-T-GTTTTTGTTTGT--AA-TT--GAATGGCTCTTTGTGTGATAAACCCGGGT-GTT-AA---AAATGC-ATC--CGTAA----GTAT----AACT--AATCA-AAC-GCAC-T--TTGAACAC-GT-GC-ATCGCACGATT-A--TGAGTTGT-TT--AAGGAAGAGAAGATTATT-TTAAACCGGGGA-GTT-------TAGCGT-AA-------A----TCGAGAGAGTTGTAT--------GATGAAGAAAATGAATG-----AG-----AAAACA-ATC------GGCG-ATTAAGTGAtagtgttacc
gi|7 : agAAAGACAATAAGCAAGTCGAATTATT---A-C-AATAAG--GAC-T-GCTTAAA--GGT-------CAATAAGT-AACG-A--------AT-TTtaaattaaaaaagtcgagttttcatttcataaaacatttcgcaagtgtcccgatcatcagaaattcgttacttattgacctttaagcagtccttattgtaataattcgacttgcttattgtcttttagtag
gi|8 : aggatttgtgtaatttgtaaccagactaccgtggaatttcaacattgccggccgaccttgagctggcttacatatcgatcaaggggtgtagtacagcgtagtttttcgctttttcaaagtccggctcctacttcgctcggtcttaagttttttcattatcaaattaaataaatgttatttaaatgttactctgttgttgtttttgtttgtaattgaatggctctttgtgtgataaacccgggtgttaaaaatgcatccgtaagtataactaatcaaacgcactttgaacacgtgcatcgcacgattatgagttgtttaaggaagagaagattattttaaaccggggagtttagcgtaaatcgagagagttgtatgatgaagaaaatgaatgagaaaacaatcggcgattaagtgataaattaaaaaagtcgagttttcatttcataaaacatttcgcaagtgtcccgatcatcagAAAGACAGTAAGCAA--G-TCTAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CGGTAAGT-AACG-A-T------AT-ATA--ACTA-------CAGC--TATTTACA-TATCA-C----------AGG-AATGGAT-AAAATA------T--A-------TC-T--AG---C--------------AATTT--GT----------------GT---G--AATT--------------------AC---CAT-GG-AGCT-GGCCTG-TG-TATCGATC-----------------A-ATGG-TG-C-AAGTA-------------GTTT--CGG-C--T------------------CCT--AGT--T-CGT-TCGG-CCTT-AAGT-TTTTAT------TTATC-AAATTAA-TAAATG--TTTATT-------TAA-TGT-ACTCT----GTTGC-T-GTTCTTGTT-TC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGAGT-GTT-AA---AA-TGC-A-A--CGTAA----GTATCGATAATT--A-TCA-AAC-GCAC-T--TTGAACAC-AT-TCTATCGCAAGATT-A--TGACAC-T-TT--AATGAAGAGAAGATCAGT-TTAAACTGGGGA-GTT-------TAGCGTAAA-------A----TCAGGAGATTT---T--------AAAG----------ATG-----AG-----AAAATA-ATC------GGCG-AT--AGTGAtagtag
gi|9 : c--TTTATC-------TAA-TGT-ACTCT----GTTGT-T-GTTTTTGTT-GC----------------TCTTTGTGCGAAAAACCCGGGT-GTT-AA---AA-TGC-A-C--CGTAA----GTAT----AATT--A-TCA-AAC-ACAC-T--TTGAACAC-GT-GCAAT-G-AAGATTGA--TGAGAC-TGTT--AAT--AGAGAAGATTATT-GTAA--CGAGGA-GTT-------T-GCAT-AA-------A----TCAGGAGATTT---TTGATGAGAAATG----------ATG-----AG-----AA---A-ATC------GGCG-AT--AGTGACTG-AA---CAACCTTT---------TTT-T--T-------------TA------AACCCAA-GACTCCCG-AAAGTTGAGG-TGA-CC-GAAAtaa
gi|9 : AAAGACAATAAGCAA--A-AATAAGTA--A-C-AATAAG---ACTA-C--TAAA--AGA-------CAATAAGC-ATTG-A-A------GT-CTA--AGTA--T--TACAtacctaatgactgtacatgtcttgccttggttaaatctggtaaatgcttttttaatatacacattcgttatatatttgacattttagcagtcttattgtaatacttagacttcaatgcttattgtcttttagtagtcttattgttacttatttttgcttattgtcttttagtgtatc
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTCGCCCCTTCCTTCTTCATAATGCTACCACCACCACCATTCTTTACAACTTATTGCAGTGAACACAGACGCACCATTTTTGCTTTTTTAATATTTATTCTTGCAGAAGGATTTTCAACGATATTCTGCGAAAATGAAGTCCCATTTCTACTCTTATTTCCTCATAAATATCAACAAAGTTGTCGCATCCTTTGCAACACCGCGTTGTTTCAACATGTTCGTAAATAAACTCGAATACGTCGTTGGAGATCTAGATACTGAAGCGGAGAAACCATATCAAACGTGATGCAACCATTTCAATGTGCAATTAGGTGCGGCTGTAATTATTTGTGTCAGTCTCTTTTTCAATGTATGAA
Unaligned ( gi|21 ): AACCATATCAAACGTGATGCAACCATTTCAAAGTGCAATTAGGCGCGGCTGTCATTATTTGTGTCAGTATCTTTTTCATGTATGAAATTAAG
Unaligned ( gi|22 ): ACCATATCAAACGTGATGCAACCATTTCAATGTGCAATTAGGTGCGGCTGTAATTATTTGTGTCAGTCTCTTTTTCATGTATGAAATTAAG
Unaligned ( gi|25 ): TTATTATCACACGTTCGTTACTTTCGTGTCTTTTAGTAGTCTTTAGTTATTGTTGCTTATTGTCTTTTA
Unaligned ( gi|27 ): CAACTTATTGCAGTCAAGACAGCGCACCATTCTTGCTGATATGTTTCTTGCAGAATGATTT
Unaligned ( gi|29 ): ATTCTCATAATATCTAACCTACGAAGTGTCGCATCCTTTGCAACACCGCATTGTTTCAAC
Unaligned ( gi|30 ): TCCTCAAAATTATCTACAAAGTGTCGCATTCTTTGCAACACCGCGCTGTGTCAACAAA
Alignments
lowQualScore : 111111111111 111111 4444444444444444444 111111 11 11 11 111111111 11 1111 1111111 1111111 11111111 2222222222 111 6666666666666666666666666666666666
lowQualScore : 8888 22 2 2 99 6 2 22 222222222222 2 2 77777777 2 33 3 77 33 44 3 3 3 3 2 3 3 000000 55 3 44 555 3 3 6 3 44 6 3 3 44 555 3 44 3 3 3 3 3 3 5555555555555555555 3 3 3 3 000000 3 666 55 7 11 3 3 3 00 55 3 3 3 3 99 7777 3 3 3 77 222222222 3 7777 3 3 3 44 3 44 44 4 3 3 22 666 3 3 0000 7777 7777 77 3 3 3 44 3 3 1 3 55 444 55 77 3 1111111 1111111 666 33333333 2222222222 99999 4 4 4 66 4 66 000 1 0000000000000000000000000000000000 5 5 5
lowQualScore : .... .. . . .. . . .. ............ . . ........ . .. . .. .. .. . . . . . . . ...... .. . .. ... . . . . .. . . . .. ... . .. . . . . . . ................... . . . . ...... . ... .. . .. . . . .. .. . . . . .. .... . . . .. ......... . .... . . . .. . .. .. . . . .. ... . . .... .... .... .. . . . .. . . . . .. ... .. .. . ....... ....... ... ........ .......... ..... . . . .. . .. ... . .................................. . . .
lowQualScore : 6666 99 1 1 11 3 1 99 888888888888 4 5 55555555 4 44 5 44 77 22 3 3 3 3 3 6 6 555555 00 6 66 888 1 1 2 1 22 2 1 1 66 444 1 22 3 3 6 6 6 6 3333333333333333333 6 6 6 6 444444 6 444 00 3 22 3 3 3 00 00 6 6 6 6 11 6666 6 6 6 99 777777777 3 1111 3 3 3 66 3 66 66 5 6 6 33 444 6 6 0000 1111 1111 33 1 3 3 66 3 3 4 6 00 111 00 00 6 8888888 8888888 444 22222222 3333333333 11111 4 4 4 11 5 44 000 4 0000000000000000000000000000000000 7 7 7
consensus : AAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGNATAGG-AATGGAT-AAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATT-G--CCGG-CCGACCT-TG-AGCT-GGCCTA-CG-TATCGATC-----------------G-G-GG-TG-C-AAGTACA--C-G-T---AG--TTTCGG-C--TTT-TTCAAAG-T-CGGCTCCT--ACT--T-CGC-TCGG-CCTT-AAGT-TTTTTT-A--A-TTATC-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGGGT-GTT--AA---A-TGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-GT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-NTAAACCGGGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCG-AT--AGTGACTGC-AACAACC---TTTTCTTT-T----------CT-------------A------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAA
Reference ( family-2506 ) : AAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGNATAGG-AATGGAT-AAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATT-G--CCGG-CCGACCT-TG-AGCT-GGCCTA-CG-TATCGATC-----------------G-G-GG-TG-C-AAGTACA--C-G-T---AG--TTTCGG-C--TTT-TTCAAAG-T-CGGCTCCT--ACT--T-CGC-TCGG-CCTT-AAGT-TTTTTT-A--A-TTATC-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGGGT-GTT--AA---A-TGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-GT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-TTAAACCGGGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCG-AT--AGTGACTGC-AACAACC---TTTTCTTT-T----------CT-------------A------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAA
gi|1 : A--TAC-------CAATAAGT-AACG-A-A------AT-CTA--ACTAT-T--TACAGC--TATT-ACA-TATCA-TT-AG-AGGATAGG-AATGGAT-AAAATA------T--ATAACAATTC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG--TAACCGT---GGAAATTTCAACATT-G--CCGG-TCGACTTATG-AGCT-GGCTTA-CG--ATCGATTA----------------G-G-GG-TG-C-AAGTACA--C-G-T---AG--TTT-GA-CCTTTT-TTCAAAG-T-CAGCTCCT--ACT--T-CGC-TCCG-CCTT-AAGT-TTTT---A--A-TTATC-AAATT-A-TAA-TG--TTTATT-------T-AATG-TACTCT----GTTGT-TTGTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAA-CCGGGT-GTTA-AA---A-TAC-A-C--CGCAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-GT-GCGATTGCACGATT-A--TGAGAA-C-TT--AAT
gi|10 : tttgcaacaccgcgttgctgcaacatgtagaataaacacgagtacgcggtacaattatctactccatggagaaaccatatcaaaacggagtaaccgcccagttcatagttcaacaaaccgcaaccgcaattatttttgtcaatataattttccatatataaaattaaataaaaaaaaaaaaaaagagagggggggggggtatcgccgtgaaaaaaaagaggggggttggggttggttgggttggtcggatctctaaaagacatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-T------AT-TTA--A-TAT-T--TACAGC--TATTTACA-TATCAATT-AGGAGGATAGGGAATGGAT-AAAATA------T--AAAACAAATC-TAGAG---CAGATT-TGTGATAAAATTTGAGTAA-ACC-AG-CTAACCGTGTGGGAAATTTCAACACT-GCACCGGACCGACCT-TG-AGCT-GGCTT--CG-TATCGATTAG---------------G-G-GG-TG-C-AAGTACA--C-GAT---AG--TTTCGG-C--CTTATTCAAAG-T-CGGCTCCTTAACT--T-CGCTTCGG-CTCA-AAG---TTTTT-A--A-TTATC-AAATT-AG-AAATG--TTTATT-------A-ATTG-TACTCT----TTGGTAT-GTTTTTG-TTGCCAAA-TT--G-A--GCTCTTTGTG-G-------CGGGT-TTT--AATATA-TGCAA-C--CGNNN----NN----NNNNNN--NNNN-NNN-NNNN-N--NNGAA-AC-AT-Gtttcaaaaaaggggg
gi|11 : A----GT----ATAATTTAATCA-AAT-GCAC-T--TTGAACAC-AT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-GTAAACCGAGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATT-GGCG-AT--GGTGACTGC----------------------------------------------A------AACCCAACGACTCCCG-AAAATCGAGG-TGACCC-GAAAt
gi|11 : AAAGACAATAAGTAA--C-AAGAAGTA--A-C-AATAAG---ACTA-C--TAAA--AGA-------CAATAAGC-AAtgccctaaatgactgtacatgtcttgtccctggctaaacccctggtaaatgcttttctaatatcacacattcattacttattgacttttagcagtcttattgtaatacatagacttgcttattgtcttttagtagtcttattgttacttcttgttacttattgtcttttagtgtgtcc
gi|13 : agtataatttaatcaaatgcactttgaacacatgcgatcgcacgattatgagactttaatgaagagaagattattgtaaaccgaggagtttagcgtaaaatcaggagattttaatgatgagaaaacaattggcgatggtgactgcaaacccaacgactcccgaaaatcgaggtgacccgaaatgccctaaatgactgtacatgtcttgtccctggctaaacccctggtaaatgcttttctaatatcacacattcattacttattgacttttagcagtcttattgtaatacatagacATAAG-CAAC-A-A--TGAA--TAC-------CAATAAGT-AACA-A-T------AT-TTA--ACTA-------------------CA-TATCA-TT-AG-AGCATAGA-AATGGAT-AAATTA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATT-G--CCGA-CCGACCT-TG-AGCT-GGCCTA-CG-TATCGATCGGCCCCCGCCCGTGCTGG-G-GG-TG-CAAAGTACA--C-G-T---AG--TTTCGGCC--TTT-TTCAAAG-T-CGGCTCCT--ACT--T-CAC-TTAG-CCTT-AAG--TTTTTT-A--A-TTATC-AAATT-AATAAATG--TTTATTTAATCAAT-AATG-TACTCTATTAATTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCtagtgtgtcc
gi|14 : AAAGACAATGCGCAA---------GT-----C---TAAG-TAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TTTCA-TT-AG-AGCATAGG-AATGGAT-AAAATATTTTTTT--AA---AAATC-T--AG---C-GATT-TGTG-T-GAATTT--GT-A-ACC-AG-ATAACCAT----GAAATTTTAACATT-A--CCGG-CCGACCT-
gi|14 : tctacta--AG---C-GATT-TGTG-T-GAATTT--GT-G-ACC-AG-ATAACTGT---GGAAATTTTAACATT-A--CCGG-CTGACCT-GG-GGCT-GGCCTG-TG-TATTGATCG----------------G-G-GG-TG-C-AAGTA------G-T-------TTCCAC-C--TTT-TTTAAAA-T-CGGCgggnagcgatttgtgtgaatttgtgaccagataactgtggaaattttaacattaccggctgacctggggctggcctgtgtattgatcgggggtgcaagtagtttccaccttttttaaaatcggc
gi|15 : tctactaaaagacaatgcgcaagtctaagtaacaataaataccaataagtaacgatatttaactatttacagctatttacatttcattagagcataggaatggataaaatatttttttaaaaatctagcgatttgtgtgaatttgtaaccagataaccatgaaattttaacattaccggccgacctgggnTAATT--ATCATAAA-GCAT-T--TTGCACAC-AT-GCGAT-GCAAGAT--A--TGAGAG-T-TT--AATGAAGAGAAGA-TATTGGTAAATCGGGGA-GTT-------TTGCGTAAA-------ATCAGGAGATTT---T--------AATGAGA-------ATGGGGGAAAAAGAAA-ATCAGGAG-AT--AATAATTG
gi|16 : tgcaagataaaaaatgtttatAAAGACAATAAGCAA--G-TCTAAGTATTA-C-AATAAGACTGC-A-A--AAAG--T---------CAATAAGT-AACGAA-T------GT-GTA--A-TAT-gcgatcaatgagtaataaaaaagtcgagttttcattttctgttgttgcttattgtaagttacttagacttgcttattggtcttttagagtgttaccc
gi|16 : ttattgtatgtcttgcccctggctaaaccgtgctaaatccctggtaaatgcttttttgAAAGACAATAAACAA--C-AATGAGTA--A-C-AATAAG-TAAC-A-A--TAAGACTACTAAAAGACAATAAGC-AA------------GT-CTA--AGTA--T--TACAtagtagtcttattgttacttattgttactcattgttgtttattgtcttttagtgtgtcc
gi|17 : ttattgtatgtcttgcccctggctaaaccgtgctaaatccctggtaaatgcttttttgatattacacattcgttacttattgactttttgcagtcttatATC-CACGATT-AAATGAGAC-T-TTTTAATGAAGAGAAGATTATT-GTAAACCGAGGAAGTT-------TAGCGTAAA-------ATCAG---ATTT---T--------AATG----------ATGAG-----AAAACATATC-GGCG-AT--AGTGACTGC-AACAATC---TTTTCTTT-TT---------CT-------------A------AACCCAACGACTCCCG-AAAGTCGAGGTTAACCC-GAAAtagtgtgtcc
gi|18 : cc--TTT-TCCAAAG-T-CGGCTCCT--ACT--T-CGT-TCGG-CCTTAAAG---TTTTT-A--A-TTATC-AAATT-AATAAATGGTTTTATT----------ATG-TACTCT----GTTG--T-GTTTTTG-TTGC--AA-TTTGAAA--GCCCTTTGTGCGAT-AACCCGGGT-GTT----------------------A----GT----ATAATT--ATCA-AACGGCACTT--TTGAACAC-GT-GCGATCGCaccctaaatgg
gi|19 : ct-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTAC--TATCA-TTAAG-AGGATAGG-AATGGAT-AAAATA------TAAAAAACAAATC-T--AGAGTG-GATT-TGTG-T-AAATTT--GT-ACACCAAG-CTAACCGT---GGAAATTTCAACATT-G--CCG
gi|2 : AGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------AAATAATA-AACA-AAT------AT-TTA--ACTAA-T--TACAGC--TATTTACAATAT-A-TT-AG-AGCATAGG-TATGGATTAAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-C-AAGTTT--GT-A-ACC-AG-CTAACCGT---GAAAATTTCAACATT-G--CCAG-CCGACCT-TG-AGCT-GGCCTA-CG-CATCGATC-----------------GCG-GG-TG-C-AAGTACA--C-G-T---AG--TTTCAGCC--TTT-TTCAAAG-T-CGGCTCCTGAAGTAGG-AGT-TCGG-CCTG-AAA--TTTTTT-A--A-GTATC-AAATT-AATAAATGT-TTTATT-------C-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGA--------------T--AA---A-TGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAA-T--TTGAACAC-GT-GCAATCCCAAGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATGATT-TTAAACCGGGGA-GTT-------TAGCATAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCT-AT--AGTGA-TAA-AAAAGTCGAGTTTTCATT-TCATCATTTCACT-------------AGTGTCCAGATCAATGACTCGAG-AAAGTCGAAG-TGACCC-GAGA
gi|2 : AAAGACAATAAGCAA--C-AATAAG----A-CTACTAAA-AGAC-A-A--TATT--TA------------AAGT-AACG-A-TTGTGTGATATTA--A--AT-T--CA-AGC---ATTTACaaccctaaatgactgtacatgtcttgcccctggctaatcccctggtaaatgcttgaatttaatatcacacaatcgttactttaaatattgtcttttagtagtcttattgttgcttattgtcttttag
gi|20 : agtaacaataagcaacaataaatacaaataataaacaaatatttaactaattacagctatttacaatatattagagcataggtatggattaaaatataaaacaaatctagcgatttgtgcaagtttgtaaccagctaaccgtgaaaatttcaacattgccagccgaccttgagctggcctacgcatcgatcgcgggtgcaagtacacgtagtttcagcctttttcaaagtcggctcctgaagtaggagttcggcctgaaattttttaagtatcaaattaataaatgttttattcaatgtactctgttgttgtttttgttgcaattgaagctctttgtgcgataaatgcaccgtaagtataattatcaaacgcaatttgaacacgtgcaatcccaagattatgagactttaatgaagagaagatgattttaaaccggggagtttagcataaaatcaggagattttaatgatgagaaaacaatcggctatagtgataaaaaagtcgagttttcatttcatcatttcactagtgtccagatcaatgactcgagaaagtcgaagtgacccgagaaaccctaaatgactgtacatgtcttgcccctggctaatcccctgATGAAGAGAAGATTATT-TTAAACCGGGGA-GAT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ACAAG-----AAAAtag
gi|23 : -ATC-GGCGGAT--AGTGA-TGC-AACAGCC---TTTTCTTT-T----------CT-------------A------AACCCAACGA-TCCCGCAAAGTCGAGG-TGACCCTGAAAtgaacaacaattgaaattttttttat
gi|24 : tAAAGACAATAAGCAA--G-TATAAGTA--A-C-ATTAAG-TAAC-A-A--TAAtgacc
gi|26 : tcgagtaacttttcatttcAAAGACAATAA-TAA--C-AATAAGGC--A-C-AATAAGACTAC-T-G--TAAA--GA--------CAATAAGC-AAtagtgttaccc
gi|28 : tAAAGACAATAAGCAA--CAAATAAGCA--A-C-AATAAG-TAAC-A-A--TAtagtgtga
gi|28 : ggatctactaAATAAGCAA--C-AATAAGTA--A-C-AATAGT-TTAC-A-A--TAgtttacaata
gi|3 : ggatctactaaaagacaataagcaacaACAAGAAG-AA--C-AATAAGTA--A-C-A-TAAG-CAACGA-A--TAAA--TAC--------AATAAGT-AACG-A-T------AT-TTA--ATTAA-T--TAAAGCCATATTTACA-TATCA-TT-AG-AGCATAGA-ATTGGAT-AAAATA------T--AAAACAAAAT-T--AG---T-GATTCTGTGAT-AAATTT--GTGA-ACC-AG-CTAACCGT---GGAAATTTCAACTTTCC--CCGA-CCGA-CT-TGCAGC--GGCTTACCGTTATC-ATC-------------------A-GG-TGCC-AAGTACT--CGG-TGAAAG--TTTCGC-C--TTT-TTCAAAGTT-CGACTCCC---CT--T-CGC-TCGG--CTT-AAGTATTTCTT-G--ACTTATCAAAATT-AATAAATG----TATT-------T-AATA-TACTCT----G-TGT-T-G-TTTTA-TTAC--AA-TT--GAA--GCTC-TTG-GCGA-AAACCCGAGTCGTA--AA---A-TGC-A----CGCAAAACTGT----A-AATT--AC---AAC-GCAC-CGGTTGAACACTGTAGCGATCACACG-TT-A--TGAGAC---TT--AAT
gi|3 : taaaaaccaataagccaGTGACTGCCAACAACC---TTTTCTTT-T----------CTTTTACATGTGAATA------AACCCAACAAC-CGAG-AAAGTCGAGG-CGACCC-GAAagcttatattatgcttttatttagaatatttcaaatttaacgtatggatatatagaacataccttgttggacgtgactgccaacaaccttttcttttcttttacatgtgaataaacccaacaaccgagaaagtcgaggcgacccgaataccctgcgactcccggtaaatgctttttttaatatcacaacattcgttacttattgccttatttagcatcttatt
gi|31 : taaaaaccaataagccaacaagaagaacaataagtaacataagcaacgaataaatacaataagtaacgatatttaattaattaaagccatatttacatatcattagagcatagaattggataaaatataaaacaaaattagtgattctgtgataaatttgtgaaccagctaaccgtggaaatttcaactttccccgaccgacttgcagcggcttaccgttatcatcaggtgccaagtactcggtgaaagtttcgcctttttcaaagttcgactccccttcgctcggcttaagtatttcttgacttatcaaaattaataaatgtatttaatatactctgtgttgttttattacaattgaagctcttggcgaaaacccgagtcgtaaaatgcacgcaaaactgtaaattacaacgcaccggttgaacactgtagcgatcacacgttatgagacttaatagcttatattatgcttttatttagaatatttcaaatttaacgtatggatatatagaacataccttgttggacAAACACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-taccctgcgactcccggtaaatgctttttttaatatcacaacattcgttacttattgccttatttagcatcttatt
gi|4 : tAAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AA-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGGATAGG-AATGGAT-GAAATA------T--AAAACAATTC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATT-G--CCG--TCGACCT-TG-AGCT-GGCTTA-CG-TATCGATT-----------------A-G-GG-TG-C-AAGTACA--C-G-T---AG--TTTCGA-C--TTT-TTCAAA----CGGCTCCT--ACT--T-CGC-TCGA-CCTT-AAGT-TTTTTT-ATAA-TTA-C-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TC--GAA--GCTTTTTGTGCGATAAACCCGGGT-GTT--AA---A-TAC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-TT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-GTAAATCGAGGA-GTT-------TAACGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCG-AT--AGTGACAGC-AACAACA---TTTTCTTTAT----------CT-------------A------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAAtagtgtgacc
gi|5 : AA--C-A-TAAGTA--AAC-AATAA--CAAC-AGA--TAAA--TAC-------CAATAACT-AACG-A-T------AT-TTA--ACTATATAATACAGC--TATTTACA-TATCA-TT-AG-AGGATAGG-A-TGGAT-AAACTA------T--AAAACAATTCGT--AG---C-GATT-TGTG-T-AAATTT--GT-A-AC------------------AAATTTCAAC-TT-G--CCGG-TCCACCT-TG-AGTTTGGCTTA-CG-TATCGATT-----------------A-G-G--TG-C-AAGTACAAAC-G-T---AG--TTTCGG-CC-TTT-TTCAAAG-T-CTGCTCCT--ACT--TTCGC-TCGGGCCTT-AAGT-TTTTTTTA--A-TTATC-AAAT--AATAAATA--TT-ATC-------T-AATG-TACTCT----GTTGT-T-GT-------TGC--AATTT--GAA--GC-CTTTGTGCGATAAACCCGGGT-GTT--AA---A-TAT-A-CAACGTAA----GT----GTAATT--ATCA-
gi|5 : atctactctatggagaaaccatatcaaacggtaccgtcccagttcatagtttcaaaacaaacgcggaccgcacttatttgtgtcaatataaatttaaattttaaaaaaaaaagagaggggggggggtatcgccgtaaaaaatggggggggtttgggtcgatcttctaaaaaTAAACCCGGGT-GTTAAATATACAACGTAAGTGTAATTATCAGGAGATTG---T--------AATG----------ATGAG-----AAAAggagattgtaatgatgagaaaa
gi|6 : atctactctatggagaaaccatatcaaacggtaccgtcccagttcatagtttcaaaacaaacgcggaccgcacttatttgtgtcaatataaatttaaattttaaaaaaaaaagagaggggggggggtatcgccgtaaaaaatggggggggtttgggtcgatcttctaaaaaaacataagtaaacaataacaacagataaataccaataactaacgatatttaactatataatacagctatttacatatcattagaggataggatggataaactataaaacaattcgtagcgatttgtgtaaatttgtaacaaatttcaacttgccggtccaccttgagtttggcttacgtatcgattaggtgcaagtacaaacgtagtttcggcctttttcaaagtctgctcctactttcgctcgggccttaagttttttttaattatcaaataataaatattatctaatgtactctgttgttgttgcaatttgaagcctttgtgcgaAAAGACAATAAGCAA--G-TCTAAGTA--A-C-AATAAG-TAAC-A-A--TAA-------------------GC-AACA-A-T------AT-TTA--ACTAT-T--TAGGGC--TATTTACA-TATCA-TT-TG-AGCATAGG-AATGGAT-AAAATA------A--AAAACAAATC---------------------T-AAG----------ACT-AG-C-------------GATTTGAACATT-G--CCGG-CTGACCT-GG-AGCT-GGTCTG-TG-TATCGTTC-----------------G-G-GGGTG-T-AAGTA-------------G--TTTCGG-CC-TTT-TTTAAAG-T-CGACCCCT--AGT--T-CGC-TCGG-CCTT-A--------------------T-AAAT--GATAAATG--TTCATT-------T-AATG-TACTCT----GGTGT-T-GTTTTTA-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAA------------------A-TGC-A-A--CGTAA----GT----ATAATT--ATGA-AAC-GCAC-T--TTGTACAC-AT-GCGATCACAAGATT-A--TGAGAC-T-TT--AACGAA---AAAATTATT-TTAAAATGGGGA-GTA-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAA-----AAAA
gi|6 : ggttctgctaAAAGACAATAAGCAA--A-TATAAGGA--A-C-AATAAG-TAAC-A-G--TAAG--AAA-------TGAAAACTCAACT---T------TT-TTATTACTAT-C--ACCGAT--TATTTTCT-CATCA-TT-AA-Atcaggagattttaatgatgagaaaataatcggtgatagtaataaaaaagttgagttttcatttcttactgttacttattgttccttatatttgcttattgtcttttagtgttacc
gi|7 : ggttctgctaaaagacaataagcaagtctaagtaacaataagtaacaataagcaacaatatttaactatttagggctatttacatatcatttgagcataggaatggataaaataaaaaacaaatctaagactagcgatttgaacattgccggctgacctggagctggtctgtgtatcgttcgggggtgtaagtagtttcggccttttttaaagtcgacccctagttcgctcggccttataaatgataaatgttcatttaatgtactctggtgttgtttttattgcaattgaagctctttgtgcgataaaatgcaacgtaagtataattatgaaacgcactttgtacacatgcgatcacaagattatgagactttaacgaaaaaattattttaaaatggggagtatagcgtaaaatcaggagattttaatgatgaaaaaatcaggagat-GATT-TGTG-T-AA-TTT--GT-A-ACC-AGACTA-CCGT---GGAA-TTTCAACATT-G--CCGG-CCGACCT-TG-AGCT-GGCTTA-CA-TATCGATCAA---------------G-G-GG-TG-T--AGTACAG-C-G-T---AGTTTTTC-G-C--TTT-TTCAAAG-TCCGGCTCCT--ACT--T-CGC-TCGG-TCTT-AAGT-TTTTTC----A-TTATC-AAATTAAATAAATG---TTATT-------TAAATGTTACTCT----GTTGT-T-GTTTTTGTTTGT--AA-TT--GAATGGCTCTTTGTGTGATAAACCCGGGT-GTTAAAA---A-TGC-ATC--CGTAA----GT----ATAACTA-ATCA-AAC-GCAC-T--TTGAACAC-GT-GC-ATCGCACGATT-A--TGAGTTGT-TT--AAGGAAGAGAAGATTATT-TTAAACCGGGGA-GTT-------TAGCGT-AA-------ATCGAGAGAGTTGTAT--------GATGAAGAAAATGAATGAG-----AAAACA-ATC-GGCG-ATTAAGTGAtagtgttacc
gi|7 : agAAAGACAATAAGCAAGTCGAATTATT---A-C-AATAAG--GAC-T-GCTTAAA--GGT-------CAATAAGT-AACG-A--------AT-TTtaaattaaaaaagtcgagttttcatttcataaaacatttcgcaagtgtcccgatcatcagaaattcgttacttattgacctttaagcagtccttattgtaataattcgacttgcttattgtcttttagtag
gi|8 : aggatttgtgtaatttgtaaccagactaccgtggaatttcaacattgccggccgaccttgagctggcttacatatcgatcaaggggtgtagtacagcgtagtttttcgctttttcaaagtccggctcctacttcgctcggtcttaagttttttcattatcaaattaaataaatgttatttaaatgttactctgttgttgtttttgtttgtaattgaatggctctttgtgtgataaacccgggtgttaaaaatgcatccgtaagtataactaatcaaacgcactttgaacacgtgcatcgcacgattatgagttgtttaaggaagagaagattattttaaaccggggagtttagcgtaaatcgagagagttgtatgatgaagaaaatgaatgagaaaacaatcggcgattaagtgataaattaaaaaagtcgagttttcatttcataaaacatttcgcaagtgtcccgatcatcagAAAGACAGTAAGCAA--G-TCTAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CGGTAAGT-AACG-A-T------AT-ATA--AC-------TACAGC--TATTTACA-TATC-----------ACAGG-AATGGAT-AAAATA------T---------ATC-T--AG---C-AATT-TGTG-T-GAATT------------------ACCAT---GGA-------------G--CTGG-C------------------CTG-TG-TATCGATC-----------------A-ATGG-TG-C-AA---------G-T---AG--TT--------------------T-CGGCTCCT--AGT--T-CGT-TCGG-CCTT-AAG---TTTTT-A--T-TTATC-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGC-T-GTTCTTG-TTTC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGAGT-GTTA-AA---A-TGC-A-A--CGTAA----GTATCGATAATT--ATCA-AAC-GCAC-T--TTGAACAC-AT-TCTATCGCAAGATT-A--TGACAC-T-TT--AATGAAGAGAAGATCAGT-TTAAACTGGGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AAAG----------ATGAG-----AAAATA-ATC-GGCG-AT--AGTGAtagtag
gi|9 : c--TTTATC-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC----------------TCTTTGTGCGAAAAACCCGGGT-GTT--AA---AATGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-ACAC-T--TTGAACAC-GT-GCAAT-G-AAGATTGA--TGAGAC-TGTT--AAT--AGAGAAGATTATT-GTAA--CGAGGA-GTT-------T-GCAT-AA-------ATCAGGAGATTT---TTGATGAGAAATG----------ATGAG-----AA---A-ATC-GGCG-AT--AGTGACTG--AACAACC---TTT--TTT-T----------TT-------------A------AACCCAA-GACTCCCG-AAAGTTGAGG-TGA-CC-GAAAtaa
gi|9 : AAAGACAATAAGCAA--A-AATAAGTA--A-C-AATAAG---ACTA-C--TAAA--AGA-------CAATAAGC-ATTG-A-A------GT-CTA--AGTA--T--TACAtacctaatgactgtacatgtcttgccttggttaaatctggtaaatgcttttttaatatacacattcgttatatatttgacattttagcagtcttattgtaatacttagacttcaatgcttattgtcttttagtagtcttattgttacttatttttgcttattgtcttttagtgtatc
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTCGCCCCTTCCTTCTTCATAATGCTACCACCACCACCATTCTTTACAACTTATTGCAGTGAACACAGACGCACCATTTTTGCTTTTTTAATATTTATTCTTGCAGAAGGATTTTCAACGATATTCTGCGAAAATGAAGTCCCATTTCTACTCTTATTTCCTCATAAATATCAACAAAGTTGTCGCATCCTTTGCAACACCGCGTTGTTTCAACATGTTCGTAAATAAACTCGAATACGTCGTTGGAGATCTAGATACTGAAGCGGAGAAACCATATCAAACGTGATGCAACCATTTCAATGTGCAATTAGGTGCGGCTGTAATTATTTGTGTCAGTCTCTTTTTCAATGTATGAA
Unaligned ( gi|21 ): AACCATATCAAACGTGATGCAACCATTTCAAAGTGCAATTAGGCGCGGCTGTCATTATTTGTGTCAGTATCTTTTTCATGTATGAAATTAAG
Unaligned ( gi|22 ): ACCATATCAAACGTGATGCAACCATTTCAATGTGCAATTAGGTGCGGCTGTAATTATTTGTGTCAGTCTCTTTTTCATGTATGAAATTAAG
Unaligned ( gi|25 ): TTATTATCACACGTTCGTTACTTTCGTGTCTTTTAGTAGTCTTTAGTTATTGTTGCTTATTGTCTTTTA
Unaligned ( gi|27 ): CAACTTATTGCAGTCAAGACAGCGCACCATTCTTGCTGATATGTTTCTTGCAGAATGATTT
Unaligned ( gi|29 ): ATTCTCATAATATCTAACCTACGAAGTGTCGCATCCTTTGCAACACCGCATTGTTTCAAC
Unaligned ( gi|30 ): TCCTCAAAATTATCTACAAAGTGTCGCATTCTTTGCAACACCGCGCTGTGTCAACAAA
Alignments
lowQualScore : 111111111111 111111 4444444444444444444 111111 11 11 11 111111111 11 1111 1111111 1111111 11111111 2222222222 111 6666666666666666666666666666666666
lowQualScore : 8888 22 2 2 99 6 2 22 222222222222 2 2 77777777 2 33 3 77 33 44 3 3 3 3 2 3 3 000000 55 3 44 555 3 3 6 3 44 6 3 3 44 555 3 44 3 3 3 3 3 3 5555555555555555555 3 3 3 3 000000 3 666 55 7 11 3 3 3 00 55 3 3 3 3 99 7777 3 3 3 77 222222222 3 7777 3 3 3 44 3 44 44 4 3 3 22 666 3 3 0000 7777 7777 77 3 3 3 44 3 3 1 3 55 444 55 55 3 1111111 1111111 666 33333333 2222222222 99999 4 4 4 66 4 66 000 1 0000000000000000000000000000000000 5 5 5
lowQualScore : .... .. . . .. . . .. ............ . . ........ . .. . .. .. .. . . . . . . . ...... .. . .. ... . . . . .. . . . .. ... . .. . . . . . . ................... . . . . ...... . ... .. . .. . . . .. .. . . . . .. .... . . . .. ......... . .... . . . .. . .. .. . . . .. ... . . .... .... .... .. . . . .. . . . . .. ... .. .. . ....... ....... ... ........ .......... ..... . . . .. . .. ... . .................................. . . .
lowQualScore : 6666 99 1 1 11 3 1 99 888888888888 4 5 55555555 4 44 5 44 77 22 3 3 3 3 3 6 6 555555 00 6 66 888 1 1 2 1 22 2 1 1 66 444 1 22 3 3 6 6 6 6 3333333333333333333 6 6 6 6 444444 6 444 00 3 22 3 3 3 00 00 6 6 6 6 11 6666 6 6 6 99 777777777 3 1111 3 3 3 66 3 66 66 5 6 6 33 444 6 6 0000 1111 1111 33 1 3 3 66 3 3 4 6 00 111 00 00 6 8888888 8888888 444 22222222 3333333333 11111 4 4 4 11 5 44 000 4 0000000000000000000000000000000000 7 7 7
consensus : AAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGNATAGG-AATGGAT-AAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATT-G--CCGG-CCGACCT-TG-AGCT-GGCCTA-CG-TATCGATC-----------------G-G-GG-TG-C-AAGTACA--C-G-T---AG--TTTCGG-C--TTT-TTCAAAG-T-CGGCTCCT--ACT--T-CGC-TCGG-CCTT-AAGT-TTTTTT-A--A-TTATC-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGGGT-GTT--AA---A-TGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-GT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-NTAAACCGGGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCG-AT--AGTGACTGC-AACAACC---TTTTCTTT-T----------CT-------------A------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAA
Reference ( family-2506 ) : AAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGNATAGG-AATGGAT-AAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATT-G--CCGG-CCGACCT-TG-AGCT-GGCCTA-CG-TATCGATC-----------------G-G-GG-TG-C-AAGTACA--C-G-T---AG--TTTCGG-C--TTT-TTCAAAG-T-CGGCTCCT--ACT--T-CGC-TCGG-CCTT-AAGT-TTTTTT-A--A-TTATC-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGGGT-GTT--AA---A-TGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-GT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-NTAAACCGGGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCG-AT--AGTGACTGC-AACAACC---TTTTCTTT-T----------CT-------------A------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAA
gi|1 : A--TAC-------CAATAAGT-AACG-A-A------AT-CTA--ACTAT-T--TACAGC--TATT-ACA-TATCA-TT-AG-AGGATAGG-AATGGAT-AAAATA------T--ATAACAATTC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG--TAACCGT---GGAAATTTCAACATT-G--CCGG-TCGACTTATG-AGCT-GGCTTA-CG--ATCGATTA----------------G-G-GG-TG-C-AAGTACA--C-G-T---AG--TTT-GA-CCTTTT-TTCAAAG-T-CAGCTCCT--ACT--T-CGC-TCCG-CCTT-AAGT-TTTT---A--A-TTATC-AAATT-A-TAA-TG--TTTATT-------T-AATG-TACTCT----GTTGT-TTGTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAA-CCGGGT-GTTA-AA---A-TAC-A-C--CGCAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-GT-GCGATTGCACGATT-A--TGAGAA-C-TT--AAT
gi|10 : tttgcaacaccgcgttgctgcaacatgtagaataaacacgagtacgcggtacaattatctactccatggagaaaccatatcaaaacggagtaaccgcccagttcatagttcaacaaaccgcaaccgcaattatttttgtcaatataattttccatatataaaattaaataaaaaaaaaaaaaaagagagggggggggggtatcgccgtgaaaaaaaagaggggggttggggttggttgggttggtcggatctctaaaagacatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-T------AT-TTA--A-TAT-T--TACAGC--TATTTACA-TATCAATT-AGGAGGATAGGGAATGGAT-AAAATA------T--AAAACAAATC-TAGAG---CAGATT-TGTGATAAAATTTGAGTAA-ACC-AG-CTAACCGTGTGGGAAATTTCAACACT-GCACCGGACCGACCT-TG-AGCT-GGCTT--CG-TATCGATTAG---------------G-G-GG-TG-C-AAGTACA--C-GAT---AG--TTTCGG-C--CTTATTCAAAG-T-CGGCTCCTTAACT--T-CGCTTCGG-CTCA-AAG---TTTTT-A--A-TTATC-AAATT-AG-AAATG--TTTATT-------A-ATTG-TACTCT----TTGGTAT-GTTTTTG-TTGCCAAA-TT--G-A--GCTCTTTGTG-G-------CGGGT-TTT--AATATA-TGCAA-C--CGNNN----NN----NNNNNN--NNNN-NNN-NNNN-N--NNGAA-AC-AT-Gtttcaaaaaaggggg
gi|11 : A----GT----ATAATTTAATCA-AAT-GCAC-T--TTGAACAC-AT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-GTAAACCGAGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATT-GGCG-AT--GGTGACTGC----------------------------------------------A------AACCCAACGACTCCCG-AAAATCGAGG-TGACCC-GAAAt
gi|11 : AAAGACAATAAGTAA--C-AAGAAGTA--A-C-AATAAG---ACTA-C--TAAA--AGA-------CAATAAGC-AAtgccctaaatgactgtacatgtcttgtccctggctaaacccctggtaaatgcttttctaatatcacacattcattacttattgacttttagcagtcttattgtaatacatagacttgcttattgtcttttagtagtcttattgttacttcttgttacttattgtcttttagtgtgtcc
gi|13 : agtataatttaatcaaatgcactttgaacacatgcgatcgcacgattatgagactttaatgaagagaagattattgtaaaccgaggagtttagcgtaaaatcaggagattttaatgatgagaaaacaattggcgatggtgactgcaaacccaacgactcccgaaaatcgaggtgacccgaaatgccctaaatgactgtacatgtcttgtccctggctaaacccctggtaaatgcttttctaatatcacacattcattacttattgacttttagcagtcttattgtaatacatagacATAAG-CAAC-A-A--TGAA--TAC-------CAATAAGT-AACA-A-T------AT-TTA--ACTA-------------------CA-TATCA-TT-AG-AGCATAGA-AATGGAT-AAATTA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATT-G--CCGA-CCGACCT-TG-AGCT-GGCCTA-CG-TATCGATCGGCCCCCGCCCGTGCTGG-G-GG-TG-CAAAGTACA--C-G-T---AG--TTTCGGCC--TTT-TTCAAAG-T-CGGCTCCT--ACT--T-CAC-TTAG-CCTT-AAG--TTTTTT-A--A-TTATC-AAATT-AATAAATG--TTTATTTAATCAAT-AATG-TACTCTATTAATTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCtagtgtgtcc
gi|14 : AAAGACAATGCGCAA---------GT-----C---TAAG-TAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TTTCA-TT-AG-AGCATAGG-AATGGAT-AAAATATTTTTTT--AA---AAATC-T--AG---C-GATT-TGTG-T-GAATTT--GT-A-ACC-AG-ATAACCAT----GAAATTTTAACATT-A--CCGG-CCGACCT-
gi|14 : tctacta--AG---C-GATT-TGTG-T-GAATTT--GT-G-ACC-AG-ATAACTGT---GGAAATTTTAACATT-A--CCGG-CTGACCT-GG-GGCT-GGCCTG-TG-TATTGATCG----------------G-G-GG-TG-C-AAGTA------G-T-------TTCCAC-C--TTT-TTTAAAA-T-CGGCgggnagcgatttgtgtgaatttgtgaccagataactgtggaaattttaacattaccggctgacctggggctggcctgtgtattgatcgggggtgcaagtagtttccaccttttttaaaatcggc
gi|15 : tctactaaaagacaatgcgcaagtctaagtaacaataaataccaataagtaacgatatttaactatttacagctatttacatttcattagagcataggaatggataaaatatttttttaaaaatctagcgatttgtgtgaatttgtaaccagataaccatgaaattttaacattaccggccgacctgggnTAATT--ATCATAAA-GCAT-T--TTGCACAC-AT-GCGAT-GCAAGAT--A--TGAGAG-T-TT--AATGAAGAGAAGA-TATTGGTAAATCGGGGA-GTT-------TTGCGTAAA-------ATCAGGAGATTT---T--------AATGAGA-------ATGGGGGAAAAAGAAA-ATCAGGAG-AT--AATAATTG
gi|16 : tgcaagataaaaaatgtttatAAAGACAATAAGCAA--G-TCTAAGTATTA-C-AATAAGACTGC-A-A--AAAG--T---------CAATAAGT-AACGAA-T------GT-GTA--A-TAT-gcgatcaatgagtaataaaaaagtcgagttttcattttctgttgttgcttattgtaagttacttagacttgcttattggtcttttagagtgttaccc
gi|16 : ttattgtatgtcttgcccctggctaaaccgtgctaaatccctggtaaatgcttttttgAAAGACAATAAACAA--C-AATGAGTA--A-C-AATAAG-TAAC-A-A--TAAGACTACTAAAAGACAATAAGC-AA------------GT-CTA--AGTA--T--TACAtagtagtcttattgttacttattgttactcattgttgtttattgtcttttagtgtgtcc
gi|17 : ttattgtatgtcttgcccctggctaaaccgtgctaaatccctggtaaatgcttttttgatattacacattcgttacttattgactttttgcagtcttatATC-CACGATT-AAATGAGAC-T-TTTTAATGAAGAGAAGATTATT-GTAAACCGAGGAAGTT-------TAGCGTAAA-------ATCAG---ATTT---T--------AATG----------ATGAG-----AAAACATATC-GGCG-AT--AGTGACTGC-AACAATC---TTTTCTTT-TT---------CT-------------A------AACCCAACGACTCCCG-AAAGTCGAGGTTAACCC-GAAAtagtgtgtcc
gi|18 : cc--TTT-TCCAAAG-T-CGGCTCCT--ACT--T-CGT-TCGG-CCTTAAAG---TTTTT-A--A-TTATC-AAATT-AATAAATGGTTTTATT----------ATG-TACTCT----GTTG--T-GTTTTTG-TTGC--AA-TTTGAAA--GCCCTTTGTGCGAT-AACCCGGGT-GTT----------------------A----GT----ATAATT--ATCA-AACGGCACTT--TTGAACAC-GT-GCGATCGCaccctaaatgg
gi|19 : ct-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTAC--TATCA-TTAAG-AGGATAGG-AATGGAT-AAAATA------TAAAAAACAAATC-T--AGAGTG-GATT-TGTG-T-AAATTT--GT-ACACCAAG-CTAACCGT---GGAAATTTCAACATT-G--CCG
gi|2 : AGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------AAATAATA-AACA-AAT------AT-TTA--ACTAA-T--TACAGC--TATTTACAATAT-A-TT-AG-AGCATAGG-TATGGATTAAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-C-AAGTTT--GT-A-ACC-AG-CTAACCGT---GAAAATTTCAACATT-G--CCAG-CCGACCT-TG-AGCT-GGCCTA-CG-CATCGATC-----------------GCG-GG-TG-C-AAGTACA--C-G-T---AG--TTTCAGCC--TTT-TTCAAAG-T-CGGCTCCTGAAGTAGG-AGT-TCGG-CCTG-AAA--TTTTTT-A--A-GTATC-AAATT-AATAAATGT-TTTATT-------C-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGA--------------T--AA---A-TGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAA-T--TTGAACAC-GT-GCAATCCCAAGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATGATT-TTAAACCGGGGA-GTT-------TAGCATAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCT-AT--AGTGA-TAA-AAAAGTCGAGTTTTCATT-TCATCATTTCACT-------------AGTGTCCAGATCAATGACTCGAG-AAAGTCGAAG-TGACCC-GAGA
gi|2 : AAAGACAATAAGCAA--C-AATAAG----A-CTACTAAA-AGAC-A-A--TATT--TA------------AAGT-AACG-A-TTGTGTGATATTA--A--AT-T--CA-AGC---ATTTACaaccctaaatgactgtacatgtcttgcccctggctaatcccctggtaaatgcttgaatttaatatcacacaatcgttactttaaatattgtcttttagtagtcttattgttgcttattgtcttttag
gi|20 : agtaacaataagcaacaataaatacaaataataaacaaatatttaactaattacagctatttacaatatattagagcataggtatggattaaaatataaaacaaatctagcgatttgtgcaagtttgtaaccagctaaccgtgaaaatttcaacattgccagccgaccttgagctggcctacgcatcgatcgcgggtgcaagtacacgtagtttcagcctttttcaaagtcggctcctgaagtaggagttcggcctgaaattttttaagtatcaaattaataaatgttttattcaatgtactctgttgttgtttttgttgcaattgaagctctttgtgcgataaatgcaccgtaagtataattatcaaacgcaatttgaacacgtgcaatcccaagattatgagactttaatgaagagaagatgattttaaaccggggagtttagcataaaatcaggagattttaatgatgagaaaacaatcggctatagtgataaaaaagtcgagttttcatttcatcatttcactagtgtccagatcaatgactcgagaaagtcgaagtgacccgagaaaccctaaatgactgtacatgtcttgcccctggctaatcccctgATGAAGAGAAGATTATT-TTAAACCGGGGA-GAT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ACAAG-----AAAAtag
gi|23 : -ATC-GGCGGAT--AGTGA-TGC-AACAGCC---TTTTCTTT-T----------CT-------------A------AACCCAACGA-TCCCGCAAAGTCGAGG-TGACCCTGAAAtgaacaacaattgaaattttttttat
gi|24 : tAAAGACAATAAGCAA--G-TATAAGTA--A-C-ATTAAG-TAAC-A-A--TAAtgacc
gi|26 : tcgagtaacttttcatttcAAAGACAATAA-TAA--C-AATAAGGC--A-C-AATAAGACTAC-T-G--TAAA--GA--------CAATAAGC-AAtagtgttaccc
gi|28 : tAAAGACAATAAGCAA--CAAATAAGCA--A-C-AATAAG-TAAC-A-A--TAtagtgtga
gi|28 : ggatctactaAATAAGCAA--C-AATAAGTA--A-C-AATAGT-TTAC-A-A--TAgtttacaata
gi|3 : ggatctactaaaagacaataagcaacaACAAGAAG-AA--C-AATAAGTA--A-C-A-TAAG-CAACGA-A--TAAA--TAC--------AATAAGT-AACG-A-T------AT-TTA--ATTAA-T--TAAAGCCATATTTACA-TATCA-TT-AG-AGCATAGA-ATTGGAT-AAAATA------T--AAAACAAAAT-T--AG---T-GATTCTGTGAT-AAATTT--GTGA-ACC-AG-CTAACCGT---GGAAATTTCAACTTTCC--CCGA-CCGA-CT-TGCAGC--GGCTTACCGTTATC-ATC-------------------A-GG-TGCC-AAGTACT--CGG-TGAAAG--TTTCGC-C--TTT-TTCAAAGTT-CGACTCCC---CT--T-CGC-TCGG--CTT-AAGTATTTCTT-G--ACTTATCAAAATT-AATAAATG----TATT-------T-AATA-TACTCT----G-TGT-T-G-TTTTA-TTAC--AA-TT--GAA--GCTC-TTG-GCGA-AAACCCGAGTCGTA--AA---A-TGC-A----CGCAAAACTGT----A-AATT--AC---AAC-GCAC-CGGTTGAACACTGTAGCGATCACACG-TT-A--TGAGAC---TT--AAT
gi|3 : taaaaaccaataagccaGTGACTGCCAACAACC---TTTTCTTT-T----------CTTTTACATGTGAATA------AACCCAACAAC-CGAG-AAAGTCGAGG-CGACCC-GAAagcttatattatgcttttatttagaatatttcaaatttaacgtatggatatatagaacataccttgttggacgtgactgccaacaaccttttcttttcttttacatgtgaataaacccaacaaccgagaaagtcgaggcgacccgaataccctgcgactcccggtaaatgctttttttaatatcacaacattcgttacttattgccttatttagcatcttatt
gi|31 : taaaaaccaataagccaacaagaagaacaataagtaacataagcaacgaataaatacaataagtaacgatatttaattaattaaagccatatttacatatcattagagcatagaattggataaaatataaaacaaaattagtgattctgtgataaatttgtgaaccagctaaccgtggaaatttcaactttccccgaccgacttgcagcggcttaccgttatcatcaggtgccaagtactcggtgaaagtttcgcctttttcaaagttcgactccccttcgctcggcttaagtatttcttgacttatcaaaattaataaatgtatttaatatactctgtgttgttttattacaattgaagctcttggcgaaaacccgagtcgtaaaatgcacgcaaaactgtaaattacaacgcaccggttgaacactgtagcgatcacacgttatgagacttaatagcttatattatgcttttatttagaatatttcaaatttaacgtatggatatatagaacataccttgttggacAAACACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-taccctgcgactcccggtaaatgctttttttaatatcacaacattcgttacttattgccttatttagcatcttatt
gi|4 : tAAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AA-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGGATAGG-AATGGAT-GAAATA------T--AAAACAATTC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATT-G--CCG--TCGACCT-TG-AGCT-GGCTTA-CG-TATCGATT-----------------A-G-GG-TG-C-AAGTACA--C-G-T---AG--TTTCGA-C--TTT-TTCAAA----CGGCTCCT--ACT--T-CGC-TCGA-CCTT-AAGT-TTTTTT-ATAA-TTA-C-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TC--GAA--GCTTTTTGTGCGATAAACCCGGGT-GTT--AA---A-TAC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-TT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-GTAAATCGAGGA-GTT-------TAACGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCG-AT--AGTGACAGC-AACAACA---TTTTCTTTAT----------CT-------------A------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAAtagtgtgacc
gi|5 : AA--C-A-TAAGTA--AAC-AATAA--CAAC-AGA--TAAA--TAC-------CAATAACT-AACG-A-T------AT-TTA--ACTATATAATACAGC--TATTTACA-TATCA-TT-AG-AGGATAGG-A-TGGAT-AAACTA------T--AAAACAATTCGT--AG---C-GATT-TGTG-T-AAATTT--GT-A-AC------------------AAATTTCAAC-TT-G--CCGG-TCCACCT-TG-AGTTTGGCTTA-CG-TATCGATT-----------------A-G-G--TG-C-AAGTACAAAC-G-T---AG--TTTCGG-CC-TTT-TTCAAAG-T-CTGCTCCT--ACT--TTCGC-TCGGGCCTT-AAGT-TTTTTTTA--A-TTATC-AAAT--AATAAATA--TT-ATC-------T-AATG-TACTCT----GTTGT-T-GT-------TGC--AATTT--GAA--GC-CTTTGTGCGATAAACCCGGGT-GTT--AA---A-TAT-A-CAACGTAA----GT----GTAATT--ATCA-
gi|5 : atctactctatggagaaaccatatcaaacggtaccgtcccagttcatagtttcaaaacaaacgcggaccgcacttatttgtgtcaatataaatttaaattttaaaaaaaaaagagaggggggggggtatcgccgtaaaaaatggggggggtttgggtcgatcttctaaaaaTAAACCCGGGT-GTTAAATATACAACGTAAGTGTAATTATCAGGAGATTG---T--------AATG----------ATGAG-----AAAAggagattgtaatgatgagaaaa
gi|6 : atctactctatggagaaaccatatcaaacggtaccgtcccagttcatagtttcaaaacaaacgcggaccgcacttatttgtgtcaatataaatttaaattttaaaaaaaaaagagaggggggggggtatcgccgtaaaaaatggggggggtttgggtcgatcttctaaaaaaacataagtaaacaataacaacagataaataccaataactaacgatatttaactatataatacagctatttacatatcattagaggataggatggataaactataaaacaattcgtagcgatttgtgtaaatttgtaacaaatttcaacttgccggtccaccttgagtttggcttacgtatcgattaggtgcaagtacaaacgtagtttcggcctttttcaaagtctgctcctactttcgctcgggccttaagttttttttaattatcaaataataaatattatctaatgtactctgttgttgttgcaatttgaagcctttgtgcgaAAAGACAATAAGCAA--G-TCTAAGTA--A-C-AATAAG-TAAC-A-A--TAA-------------------GC-AACA-A-T------AT-TTA--ACTAT-T--TAGGGC--TATTTACA-TATCA-TT-TG-AGCATAGG-AATGGAT-AAAATA------A--AAAACAAATC---------------------T-AAG----------ACT-AG-C-------------GATTTGAACATT-G--CCGG-CTGACCT-GG-AGCT-GGTCTG-TG-TATCGTTC-----------------G-G-GGGTG-T-AAGTA-------------G--TTTCGG-CC-TTT-TTTAAAG-T-CGACCCCT--AGT--T-CGC-TCGG-CCTT-A--------------------T-AAAT--GATAAATG--TTCATT-------T-AATG-TACTCT----GGTGT-T-GTTTTTA-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAA------------------A-TGC-A-A--CGTAA----GT----ATAATT--ATGA-AAC-GCAC-T--TTGTACAC-AT-GCGATCACAAGATT-A--TGAGAC-T-TT--AACGAA---AAAATTATT-TTAAAATGGGGA-GTA-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAA-----AAAA
gi|6 : ggttctgctaAAAGACAATAAGCAA--A-TATAAGGA--A-C-AATAAG-TAAC-A-G--TAAG--AAA-------TGAAAACTCAACT---T------TT-TTATTACTAT-C--ACCGAT--TATTTTCT-CATCA-TT-AA-Atcaggagattttaatgatgagaaaataatcggtgatagtaataaaaaagttgagttttcatttcttactgttacttattgttccttatatttgcttattgtcttttagtgttacc
gi|7 : ggttctgctaaaagacaataagcaagtctaagtaacaataagtaacaataagcaacaatatttaactatttagggctatttacatatcatttgagcataggaatggataaaataaaaaacaaatctaagactagcgatttgaacattgccggctgacctggagctggtctgtgtatcgttcgggggtgtaagtagtttcggccttttttaaagtcgacccctagttcgctcggccttataaatgataaatgttcatttaatgtactctggtgttgtttttattgcaattgaagctctttgtgcgataaaatgcaacgtaagtataattatgaaacgcactttgtacacatgcgatcacaagattatgagactttaacgaaaaaattattttaaaatggggagtatagcgtaaaatcaggagattttaatgatgaaaaaatcaggagat-GATT-TGTG-T-AA-TTT--GT-A-ACC-AGACTA-CCGT---GGAA-TTTCAACATT-G--CCGG-CCGACCT-TG-AGCT-GGCTTA-CA-TATCGATCAA---------------G-G-GG-TG-T--AGTACAG-C-G-T---AGTTTTTC-G-C--TTT-TTCAAAG-TCCGGCTCCT--ACT--T-CGC-TCGG-TCTT-AAGT-TTTTTC----A-TTATC-AAATTAAATAAATG---TTATT-------TAAATGTTACTCT----GTTGT-T-GTTTTTGTTTGT--AA-TT--GAATGGCTCTTTGTGTGATAAACCCGGGT-GTTAAAA---A-TGC-ATC--CGTAA----GT----ATAACTA-ATCA-AAC-GCAC-T--TTGAACAC-GT-GC-ATCGCACGATT-A--TGAGTTGT-TT--AAGGAAGAGAAGATTATT-TTAAACCGGGGA-GTT-------TAGCGT-AA-------ATCGAGAGAGTTGTAT--------GATGAAGAAAATGAATGAG-----AAAACA-ATC-GGCG-ATTAAGTGAtagtgttacc
gi|7 : agAAAGACAATAAGCAAGTCGAATTATT---A-C-AATAAG--GAC-T-GCTTAAA--GGT-------CAATAAGT-AACG-A--------AT-TTtaaattaaaaaagtcgagttttcatttcataaaacatttcgcaagtgtcccgatcatcagaaattcgttacttattgacctttaagcagtccttattgtaataattcgacttgcttattgtcttttagtag
gi|8 : aggatttgtgtaatttgtaaccagactaccgtggaatttcaacattgccggccgaccttgagctggcttacatatcgatcaaggggtgtagtacagcgtagtttttcgctttttcaaagtccggctcctacttcgctcggtcttaagttttttcattatcaaattaaataaatgttatttaaatgttactctgttgttgtttttgtttgtaattgaatggctctttgtgtgataaacccgggtgttaaaaatgcatccgtaagtataactaatcaaacgcactttgaacacgtgcatcgcacgattatgagttgtttaaggaagagaagattattttaaaccggggagtttagcgtaaatcgagagagttgtatgatgaagaaaatgaatgagaaaacaatcggcgattaagtgataaattaaaaaagtcgagttttcatttcataaaacatttcgcaagtgtcccgatcatcagAAAGACAGTAAGCAA--G-TCTAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CGGTAAGT-AACG-A-T------AT-ATA--AC-------TACAGC--TATTTACA-TATC-----------ACAGG-AATGGAT-AAAATA------T---------ATC-T--AG---C-AATT-TGTG-T-GAATT------------------ACCAT---GGA-------------G--CTGG-C------------------CTG-TG-TATCGATC-----------------A-ATGG-TG-C-AA---------G-T---AG--TT--------------------T-CGGCTCCT--AGT--T-CGT-TCGG-CCTT-AAG---TTTTT-A--T-TTATC-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGC-T-GTTCTTG-TTTC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGAGT-GTTA-AA---A-TGC-A-A--CGTAA----GTATCGATAATT--ATCA-AAC-GCAC-T--TTGAACAC-AT-TCTATCGCAAGATT-A--TGACAC-T-TT--AATGAAGAGAAGATCAGT-TTAAACTGGGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AAAG----------ATGAG-----AAAATA-ATC-GGCG-AT--AGTGAtagtag
gi|9 : c--TTTATC-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC----------------TCTTTGTGCGAAAAACCCGGGT-GTT--AA---AATGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-ACAC-T--TTGAACAC-GT-GCAAT-G-AAGATTGA--TGAGAC-TGTT--AAT--AGAGAAGATTATT-GTAA--CGAGGA-GTT-------T-GCAT-AA-------ATCAGGAGATTT---TTGATGAGAAATG----------ATGAG-----AA---A-ATC-GGCG-AT--AGTGACTG--AACAACC---TTT--TTT-T----------TT-------------A------AACCCAA-GACTCCCG-AAAGTTGAGG-TGA-CC-GAAAtaa
gi|9 : AAAGACAATAAGCAA--A-AATAAGTA--A-C-AATAAG---ACTA-C--TAAA--AGA-------CAATAAGC-ATTG-A-A------GT-CTA--AGTA--T--TACAtacctaatgactgtacatgtcttgccttggttaaatctggtaaatgcttttttaatatacacattcgttatatatttgacattttagcagtcttattgtaatacttagacttcaatgcttattgtcttttagtagtcttattgttacttatttttgcttattgtcttttagtgtatc
blockSeqs : GTCG TT A T AC G G CT ACTACTAAAAGA C A TTGTGTG A TT C TA AA CA A A A G G G T TTTTTT AA G AG AGT A C A A GA A C A AC GTG C CA A . C T C T GGCCCCCGCCCGTGCTGG T G C A CAAAC A GAA TT C C A T C TA AG T T G A TA ATA C A A GT TAATCAAT T ATTA A . T CA T TG TG T C C AA TAT A A CAA AACT ATCG TA T G T GG T A C G AA GT TT GG A AAATATA TGTAATT GTA TGATGAGA AAGAAAATGA GGAAA T A G TA T CC GAG T TCATCATTTCACTAGTGTCC C T T
blockSeqs : CA . . . AC T . . AGA . . AT . . C T . . . . . . C . . . . . . . . . A . . G . . C . . . . . . . . . AGG . . . . CTCG . . . C C . . . GA . . . . . T TA . . . T TA . . . . . . . . . T C . A . . . TC . . A . . . . . . A . . TG . G . . . . . AGA . . . . . C C . T TCTTTTACATGTGAATA . . .
blockSeqs : G . . . C . . . TAC . . T . . G T . . . . . . C . . . . . . . . . . . . . . . C . . . . . . . . . AAG . . . . CAGC . . . . . . . . . . . . . . T A . . . . A . . . . . . . . . T C . . . . . C . . . . . . . . . C . . T . T . . . . . . . . . . . C A . T TTCTA . . .
blockSeqs : C . . . T . . . TAC . . T . . C T . . . . . . G . . . . . . . . . . . . . . . A . . . . . . . . . GG . . . . CAC . . . . . . . . . . . . . . T A . . . . C . . . . . . . . . T C . . . . . C . . . . . . . . . A . . T . T . . . . . . . . . . . C C . T ATCTA . . .
blockSeqs : C . . . T . . . TAC . . T . . C T . . . . . . C . . . . . . . . . . . . . . . A . . . . . . . . . GC . . . . CAC . . . . . . . . . . . . . . . A . . . . T . . . . . . . . . T C . . . . . C . . . . . . . . . C . . T . G . . . . . . . . . . . C C . T TCTA . . .
blockSeqs : G . . . C . . . TAC . . T . . T A . . . . . . C . . . . . . . . . . . . . . . C . . . . . . . . . A . . . . CAC . . . . . . . . . . . . . . . A . . . . T . . . . . . . . . T C . . . . . A . . . . . . . . . C . . T . T . . . . . . . . . . . . . . . TTTA . . .
blockSeqs : C . . . A . . . TAC . . T . . C T . . . . . . G . . . . . . . . . . . . . . . C . . . . . . . . . A . . . . CAC . . . . . . . . . . . . . . . G . . . . T . . . . . . . . . A C . . . . . A . . . . . . . . . A . . T . T . . . . . . . . . . . .
blockSeqs : C . . . T . . . TAC . . T . . C A . . . . . . G . . . . . . . . . . . . . . . C . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . A . . . . T . . . . . . . . . . . . . . . . C . . . . . . . . . C . . T . T . . . . . . . . . . .
blockSeqs : C . . . T . . . AAA . . T . . C T . . . . . . C . . . . . . . . . . . . . . . C . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . A . . T . G . . . . . . .
blockSeqs : C . . . T . . . GGT . . T . . C T . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . .
blockSeqs : C . . . C . . . TAC . . T . . C T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : C . . . C . . . AGA . . T . . G . . . . . . . . . . . . . . . . .
blockSeqs : G . . . C . . . TA . . T . . . . .
blockSeqs : A . . . T . . . GA . . A . . . . .
blockSeqs : G . . . T . . . T . . . . . . .
blockSeqs : A . . . C . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : C* C* G****************** ** ** ** TCTA******************************
originalCons : AAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGNATAGG-AATGGAT-AAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATT-G--CCGG-CCGACCT-TG-AGCT-GGCCTA-CG-TATCGATC-----------------G-G-GG-TG-C-AAGTACA--C-G-T---AG--TTTCGG-C--TTT-TTCAAAG-T-CGGCTCCT--ACT--T-CGC-TCGG-CCTT-AAGT-TTTTTT-A--A-TTATC-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGGGT-GTT--AA---A-TGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-GT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-NTAAACCGGGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCG-AT--AGTGACTGC-AACAACC---TTTTCTTT-T----------CT-------------A------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAA
finalCons : AAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAGC-AAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGNATAGG-AATGGAT-AAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AGC-TAACCGT---GGAAATTTCAACATT-G--CCGG-CCGACCT-TG-AGCT-GGCCTA-CG-TATCGATCG------------------G-GG-TG-C-AAGTACA--C-G-T---AG--TTTCGG-C--TTT-TTCAAAG-T-CGGCTCCT--ACT--T-CGC-TCGG-CCTT-AAG--TTTTTT-A--A-TTATC-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGGGT-GTT--AA---A-TGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-GT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-NTAAACCGGGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCG-AT--AGTGACTGC-AACAACC---TTTTCTTTTCTA------------------------------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTCGCCCCTTCCTTCTTCATAATGCTACCACCACCACCATTCTTTACAACTTATTGCAGTGAACACAGACGCACCATTTTTGCTTTTTTAATATTTATTCTTGCAGAAGGATTTTCAACGATATTCTGCGAAAATGAAGTCCCATTTCTACTCTTATTTCCTCATAAATATCAACAAAGTTGTCGCATCCTTTGCAACACCGCGTTGTTTCAACATGTTCGTAAATAAACTCGAATACGTCGTTGGAGATCTAGATACTGAAGCGGAGAAACCATATCAAACGTGATGCAACCATTTCAATGTGCAATTAGGTGCGGCTGTAATTATTTGTGTCAGTCTCTTTTTCAATGTATGAA
Unaligned ( gi|21 ): AACCATATCAAACGTGATGCAACCATTTCAAAGTGCAATTAGGCGCGGCTGTCATTATTTGTGTCAGTATCTTTTTCATGTATGAAATTAAG
Unaligned ( gi|22 ): ACCATATCAAACGTGATGCAACCATTTCAATGTGCAATTAGGTGCGGCTGTAATTATTTGTGTCAGTCTCTTTTTCATGTATGAAATTAAG
Unaligned ( gi|25 ): TTATTATCACACGTTCGTTACTTTCGTGTCTTTTAGTAGTCTTTAGTTATTGTTGCTTATTGTCTTTTA
Unaligned ( gi|27 ): CAACTTATTGCAGTCAAGACAGCGCACCATTCTTGCTGATATGTTTCTTGCAGAATGATTT
Unaligned ( gi|29 ): ATTCTCATAATATCTAACCTACGAAGTGTCGCATCCTTTGCAACACCGCATTGTTTCAAC
Unaligned ( gi|30 ): TCCTCAAAATTATCTACAAAGTGTCGCATTCTTTGCAACACCGCGCTGTGTCAACAAA
Alignments
lowQualScore : 111111111111 111111 4444444444444444444 111111 11111 11 111 111111111 11 1111 1111111 1111111 11111111 2222222222 111 6666666666666666666666666666666666
lowQualScore : 8888 22 2 2 99 6 2 22 222222222222 2 2 77777777 2 33 3 77 33 44 3 3 3 3 2 3 3 000000 55 3 44 555 3 3 6 3 44 6 3 3 44 555 3 44 3 3 3 3 3 3 5555555555555555555 3 3 3 3 000000 3 666 55 55555 3 3 3 00 55 3 3 44 777 111 3 3 3 77 222222222 3 7777 3 3 3 44 3 44 44 4 3 3 22 666 3 3 0000 7777 7777 77 3 3 3 44 3 3 1 3 55 444 55 55 3 1111111 1111111 666 33333333 2222222222 99999 4 4 4 66 4 66 000 1 0000000000000000000000000000000000 5 5 5
lowQualScore : .... .. . . .. . . .. ............ . . ........ . .. . .. .. .. . . . . . . . ...... .. . .. ... . . . . .. . . . .. ... . .. . . . . . . ................... . . . . ...... . ... .. ..... . . . .. .. . . .. ... ... . . . .. ......... . .... . . . .. . .. .. . . . .. ... . . .... .... .... .. . . . .. . . . . .. ... .. .. . ....... ....... ... ........ .......... ..... . . . .. . .. ... . .................................. . . .
lowQualScore : 6666 99 1 1 11 3 1 99 888888888888 4 5 55555555 4 44 5 44 77 22 3 3 3 3 3 6 6 555555 00 6 66 888 1 1 2 1 22 2 1 1 66 444 1 22 3 3 6 6 6 6 3333333333333333333 6 6 6 6 444444 6 444 00 11111 3 3 3 00 00 6 6 22 000 444 6 6 6 99 777777777 3 1111 3 3 3 66 3 66 66 5 6 6 33 444 6 6 0000 1111 1111 33 1 3 3 66 3 3 4 6 00 111 00 00 6 8888888 8888888 444 22222222 3333333333 11111 4 4 4 11 5 44 000 4 0000000000000000000000000000000000 7 7 7
consensus : AAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGNATAGG-AATGGAT-AAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATT-G--CCGG-CCGACCT-TG-AGCT-GGCCTA-CG-TATCGATC-----------------G-G-GG-TG-C-AAGTACA--C-G-T---AGTTT--CGG-C--TTT-TTCAAAG-TC-GGCTCCT--ACT--T-CGC-TCGG-CCTTAAG--TTTTTT---AA-TTATC-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGGGT-GTT--AA---A-TGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-GT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-NTAAACCGGGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCG-AT--AGTGACTGC-AACAACC---TTTTCTTT-T----------CT-------------A------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAA
Reference ( family-2506 ) : AAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGNATAGG-AATGGAT-AAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATT-G--CCGG-CCGACCT-TG-AGCT-GGCCTA-CG-TATCGATC-----------------G-G-GG-TG-C-AAGTACA--C-G-T---AGTTT--CGG-C--TTT-TTCAAAG-TC-GGCTCCT--ACT--T-CGC-TCGG-CCTTAAG--TTTTTT---AA-TTATC-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGGGT-GTT--AA---A-TGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-GT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-NTAAACCGGGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCG-AT--AGTGACTGC-AACAACC---TTTTCTTT-T----------CT-------------A------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAA
gi|1 : A--TAC-------CAATAAGT-AACG-A-A------AT-CTA--ACTAT-T--TACAGC--TATT-ACA-TATCA-TT-AG-AGGATAGG-AATGGAT-AAAATA------T--ATAACAATTC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG--TAACCGT---GGAAATTTCAACATT-G--CCGG-TCGACTTATG-AGCT-GGCTTA-CG--ATCGATTA----------------G-G-GG-TG-C-AAGTACA--C-G-T---AGTTT---GA-CCTTTT-TTCAAAG-TC-AGCTCCT--ACT--T-CGC-TCCG-CCTTAAG--TTTTT----AA-TTATC-AAATT-A-TAA-TG--TTTATT-------T-AATG-TACTCT----GTTGT-TTGTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAA-CCGGGT-GTTA-AA---A-TAC-A-C--CGCAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-GT-GCGATTGCACGATT-A--TGAGAA-C-TT--AAT
gi|10 : tttgcaacaccgcgttgctgcaacatgtagaataaacacgagtacgcggtacaattatctactccatggagaaaccatatcaaaacggagtaaccgcccagttcatagttcaacaaaccgcaaccgcaattatttttgtcaatataattttccatatataaaattaaataaaaaaaaaaaaaaagagagggggggggggtatcgccgtgaaaaaaaagaggggggttggggttggttgggttggtcggatctctaaaagacatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-T------AT-TTA--A-TAT-T--TACAGC--TATTTACA-TATCAATT-AGGAGGATAGGGAATGGAT-AAAATA------T--AAAACAAATC-TAGAG---CAGATT-TGTGATAAAATTTGAGTAA-ACC-AG-CTAACCGTGTGGGAAATTTCAACACT-GCACCGGACCGACCT-TG-AGCT-GGCTT--CG-TATCGATTAG---------------G-G-GG-TG-C-AAGTACA--C-GAT---AGTTT--CGG-C--CTTATTCAAAG-TC-GGCTCCTTAACT--T-CGCTTCGG--CTCAAA--GTTTTT---AA-TTATC-AAATT-AG-AAATG--TTTATT-------A-ATTG-TACTCT----TTGGTAT-GTTTTTG-TTGCCAAA-TT--G-A--GCTCTTTGTG-G-------CGGGT-TTT--AATATA-TGCAA-C--CGNNN----NN----NNNNNN--NNNN-NNN-NNNN-N--NNGAA-AC-AT-Gtttcaaaaaaggggg
gi|11 : A----GT----ATAATTTAATCA-AAT-GCAC-T--TTGAACAC-AT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-GTAAACCGAGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATT-GGCG-AT--GGTGACTGC----------------------------------------------A------AACCCAACGACTCCCG-AAAATCGAGG-TGACCC-GAAAt
gi|11 : AAAGACAATAAGTAA--C-AAGAAGTA--A-C-AATAAG---ACTA-C--TAAA--AGA-------CAATAAGC-AAtgccctaaatgactgtacatgtcttgtccctggctaaacccctggtaaatgcttttctaatatcacacattcattacttattgacttttagcagtcttattgtaatacatagacttgcttattgtcttttagtagtcttattgttacttcttgttacttattgtcttttagtgtgtcc
gi|13 : agtataatttaatcaaatgcactttgaacacatgcgatcgcacgattatgagactttaatgaagagaagattattgtaaaccgaggagtttagcgtaaaatcaggagattttaatgatgagaaaacaattggcgatggtgactgcaaacccaacgactcccgaaaatcgaggtgacccgaaatgccctaaatgactgtacatgtcttgtccctggctaaacccctggtaaatgcttttctaatatcacacattcattacttattgacttttagcagtcttattgtaatacatagacATAAG-CAAC-A-A--TGAA--TAC-------CAATAAGT-AACA-A-T------AT-TTA--ACTA-------------------CA-TATCA-TT-AG-AGCATAGA-AATGGAT-AAATTA------T--AAAACAAATC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATT-G--CCGA-CCGACCT-TG-AGCT-GGCCTA-CG-TATCGATCGGCCCCCGCCCGTGCTGG-G-GG-TG-CAAAGTACA--C-G-T---AGTTT--CGGCC--TTT-TTCAAAG-TC-GGCTCCT--ACT--T-CAC-TTAG-CCTTAAG--TTTTTT---AA-TTATC-AAATT-AATAAATG--TTTATTTAATCAAT-AATG-TACTCTATTAATTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCtagtgtgtcc
gi|14 : AAAGACAATGCGCAA---------GT-----C---TAAG-TAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTACA-TTTCA-TT-AG-AGCATAGG-AATGGAT-AAAATATTTTTTT--AA---AAATC-T--AG---C-GATT-TGTG-T-GAATTT--GT-A-ACC-AG-ATAACCAT----GAAATTTTAACATT-A--CCGG-CCGACCT-
gi|14 : tctacta--AG---C-GATT-TGTG-T-GAATTT--GT-G-ACC-AG-ATAACTGT---GGAAATTTTAACATT-A--CCGG-CTGACCT-GG-GGCT-GGCCTG-TG-TATTGATCG----------------G-G-GG-TG-C-AAGTA------G-T-----TTC--CAC-C--TTT-TTTAAAA-TC-GGCgggnagcgatttgtgtgaatttgtgaccagataactgtggaaattttaacattaccggctgacctggggctggcctgtgtattgatcgggggtgcaagtagtttccaccttttttaaaatcggc
gi|15 : tctactaaaagacaatgcgcaagtctaagtaacaataaataccaataagtaacgatatttaactatttacagctatttacatttcattagagcataggaatggataaaatatttttttaaaaatctagcgatttgtgtgaatttgtaaccagataaccatgaaattttaacattaccggccgacctgggnTAATT--ATCATAAA-GCAT-T--TTGCACAC-AT-GCGAT-GCAAGAT--A--TGAGAG-T-TT--AATGAAGAGAAGA-TATTGGTAAATCGGGGA-GTT-------TTGCGTAAA-------ATCAGGAGATTT---T--------AATGAGA-------ATGGGGGAAAAAGAAA-ATCAGGAG-AT--AATAATTG
gi|16 : tgcaagataaaaaatgtttatAAAGACAATAAGCAA--G-TCTAAGTATTA-C-AATAAGACTGC-A-A--AAAG--T---------CAATAAGT-AACGAA-T------GT-GTA--A-TAT-gcgatcaatgagtaataaaaaagtcgagttttcattttctgttgttgcttattgtaagttacttagacttgcttattggtcttttagagtgttaccc
gi|16 : ttattgtatgtcttgcccctggctaaaccgtgctaaatccctggtaaatgcttttttgAAAGACAATAAACAA--C-AATGAGTA--A-C-AATAAG-TAAC-A-A--TAAGACTACTAAAAGACAATAAGC-AA------------GT-CTA--AGTA--T--TACAtagtagtcttattgttacttattgttactcattgttgtttattgtcttttagtgtgtcc
gi|17 : ttattgtatgtcttgcccctggctaaaccgtgctaaatccctggtaaatgcttttttgatattacacattcgttacttattgactttttgcagtcttatATC-CACGATT-AAATGAGAC-T-TTTTAATGAAGAGAAGATTATT-GTAAACCGAGGAAGTT-------TAGCGTAAA-------ATCAG---ATTT---T--------AATG----------ATGAG-----AAAACATATC-GGCG-AT--AGTGACTGC-AACAATC---TTTTCTTT-TT---------CT-------------A------AACCCAACGACTCCCG-AAAGTCGAGGTTAACCC-GAAAtagtgtgtcc
gi|18 : cc--TTT-TCCAAAG-TC-GGCTCCT--ACT--T-CGT-TCGG-CCTTAAA--GTTTTT---AA-TTATC-AAATT-AATAAATGGTTTTATT----------ATG-TACTCT----GTTG--T-GTTTTTG-TTGC--AA-TTTGAAA--GCCCTTTGTGCGAT-AACCCGGGT-GTT----------------------A----GT----ATAATT--ATCA-AACGGCACTT--TTGAACAC-GT-GCGATCGCaccctaaatgg
gi|19 : ct-A-T------AT-TTA--ACTAT-T--TACAGC--TATTTAC--TATCA-TTAAG-AGGATAGG-AATGGAT-AAAATA------TAAAAAACAAATC-T--AGAGTG-GATT-TGTG-T-AAATTT--GT-ACACCAAG-CTAACCGT---GGAAATTTCAACATT-G--CCG
gi|2 : AGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------AAATAATA-AACA-AAT------AT-TTA--ACTAA-T--TACAGC--TATTTACAATAT-A-TT-AG-AGCATAGG-TATGGATTAAAATA------T--AAAACAAATC-T--AG---C-GATT-TGTG-C-AAGTTT--GT-A-ACC-AG-CTAACCGT---GAAAATTTCAACATT-G--CCAG-CCGACCT-TG-AGCT-GGCCTA-CG-CATCGATC-----------------GCG-GG-TG-C-AAGTACA--C-G-T---AGTTT--CAGCC--TTT-TTCAAAG-TC-GGCTCCTGAAGTAGG-AGT-TCGG-CCTGAAA--TTTTTT---AA-GTATC-AAATT-AATAAATGT-TTTATT-------C-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TT--GAA--GCTCTTTGTGCGA--------------T--AA---A-TGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAA-T--TTGAACAC-GT-GCAATCCCAAGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATGATT-TTAAACCGGGGA-GTT-------TAGCATAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCT-AT--AGTGA-TAA-AAAAGTCGAGTTTTCATT-TCATCATTTCACT-------------AGTGTCCAGATCAATGACTCGAG-AAAGTCGAAG-TGACCC-GAGA
gi|2 : AAAGACAATAAGCAA--C-AATAAG----A-CTACTAAA-AGAC-A-A--TATT--TA------------AAGT-AACG-A-TTGTGTGATATTA--A--AT-T--CA-AGC---ATTTACaaccctaaatgactgtacatgtcttgcccctggctaatcccctggtaaatgcttgaatttaatatcacacaatcgttactttaaatattgtcttttagtagtcttattgttgcttattgtcttttag
gi|20 : agtaacaataagcaacaataaatacaaataataaacaaatatttaactaattacagctatttacaatatattagagcataggtatggattaaaatataaaacaaatctagcgatttgtgcaagtttgtaaccagctaaccgtgaaaatttcaacattgccagccgaccttgagctggcctacgcatcgatcgcgggtgcaagtacacgtagtttcagcctttttcaaagtcggctcctgaagtaggagttcggcctgaaattttttaagtatcaaattaataaatgttttattcaatgtactctgttgttgtttttgttgcaattgaagctctttgtgcgataaatgcaccgtaagtataattatcaaacgcaatttgaacacgtgcaatcccaagattatgagactttaatgaagagaagatgattttaaaccggggagtttagcataaaatcaggagattttaatgatgagaaaacaatcggctatagtgataaaaaagtcgagttttcatttcatcatttcactagtgtccagatcaatgactcgagaaagtcgaagtgacccgagaaaccctaaatgactgtacatgtcttgcccctggctaatcccctgATGAAGAGAAGATTATT-TTAAACCGGGGA-GAT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ACAAG-----AAAAtag
gi|23 : -ATC-GGCGGAT--AGTGA-TGC-AACAGCC---TTTTCTTT-T----------CT-------------A------AACCCAACGA-TCCCGCAAAGTCGAGG-TGACCCTGAAAtgaacaacaattgaaattttttttat
gi|24 : tAAAGACAATAAGCAA--G-TATAAGTA--A-C-ATTAAG-TAAC-A-A--TAAtgacc
gi|26 : tcgagtaacttttcatttcAAAGACAATAA-TAA--C-AATAAGGC--A-C-AATAAGACTAC-T-G--TAAA--GA--------CAATAAGC-AAtagtgttaccc
gi|28 : tAAAGACAATAAGCAA--CAAATAAGCA--A-C-AATAAG-TAAC-A-A--TAtagtgtga
gi|28 : ggatctactaAATAAGCAA--C-AATAAGTA--A-C-AATAGT-TTAC-A-A--TAgtttacaata
gi|3 : ggatctactaaaagacaataagcaacaACAAGAAG-AA--C-AATAAGTA--A-C-A-TAAG-CAACGA-A--TAAA--TAC--------AATAAGT-AACG-A-T------AT-TTA--ATTAA-T--TAAAGCCATATTTACA-TATCA-TT-AG-AGCATAGA-ATTGGAT-AAAATA------T--AAAACAAAAT-T--AG---T-GATTCTGTGAT-AAATTT--GTGA-ACC-AG-CTAACCGT---GGAAATTTCAACTTTCC--CCGA-CCGA-CT-TGCAGC--GGCTTACCGTTATC-ATC-------------------A-GG-TGCC-AAGTACT--CGG-TGAAAGTTT--CGC-C--TTT-TTCAAAGTTC-GACTCCC---CT--T-CGC-TCGG--CTTAAGTATTTCTT---GACTTATCAAAATT-AATAAATG----TATT-------T-AATA-TACTCT----G-TGT-T-G-TTTTA-TTAC--AA-TT--GAA--GCTC-TTG-GCGA-AAACCCGAGTCGTA--AA---A-TGC-A----CGCAAAACTGT----A-AATT--AC---AAC-GCAC-CGGTTGAACACTGTAGCGATCACACG-TT-A--TGAGAC---TT--AAT
gi|3 : taaaaaccaataagccaGTGACTGCCAACAACC---TTTTCTTT-T----------CTTTTACATGTGAATA------AACCCAACAAC-CGAG-AAAGTCGAGG-CGACCC-GAAagcttatattatgcttttatttagaatatttcaaatttaacgtatggatatatagaacataccttgttggacgtgactgccaacaaccttttcttttcttttacatgtgaataaacccaacaaccgagaaagtcgaggcgacccgaataccctgcgactcccggtaaatgctttttttaatatcacaacattcgttacttattgccttatttagcatcttatt
gi|31 : taaaaaccaataagccaacaagaagaacaataagtaacataagcaacgaataaatacaataagtaacgatatttaattaattaaagccatatttacatatcattagagcatagaattggataaaatataaaacaaaattagtgattctgtgataaatttgtgaaccagctaaccgtggaaatttcaactttccccgaccgacttgcagcggcttaccgttatcatcaggtgccaagtactcggtgaaagtttcgcctttttcaaagttcgactccccttcgctcggcttaagtatttcttgacttatcaaaattaataaatgtatttaatatactctgtgttgttttattacaattgaagctcttggcgaaaacccgagtcgtaaaatgcacgcaaaactgtaaattacaacgcaccggttgaacactgtagcgatcacacgttatgagacttaatagcttatattatgcttttatttagaatatttcaaatttaacgtatggatatatagaacataccttgttggacAAACACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-taccctgcgactcccggtaaatgctttttttaatatcacaacattcgttacttattgccttatttagcatcttatt
gi|4 : tAAAGACAATAAGCAA--C-AATAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CAATAAGT-AACG-A-T------AA-TTA--ACTAT-T--TACAGC--TATTTACA-TATCA-TT-AG-AGGATAGG-AATGGAT-GAAATA------T--AAAACAATTC-T--AG---C-GATT-TGTG-T-AAATTT--GT-A-ACC-AG-CTAACCGT---GGAAATTTCAACATT-G--CCG--TCGACCT-TG-AGCT-GGCTTA-CG-TATCGATT-----------------A-G-GG-TG-C-AAGTACA--C-G-T---AGTTT--CGA-C--TTT-TTCAAA---C-GGCTCCT--ACT--T-CGC-TCGA-CCTTAAG--TTTTTTTATAA-TTA-C-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC--AA-TC--GAA--GCTTTTTGTGCGATAAACCCGGGT-GTT--AA---A-TAC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-GCAC-T--TTGAACAC-TT-GCGATCGCACGATT-A--TGAGAC-T-TT--AATGAAGAGAAGATTATT-GTAAATCGAGGA-GTT-------TAACGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAG-----AAAACA-ATC-GGCG-AT--AGTGACAGC-AACAACA---TTTTCTTTAT----------CT-------------A------AACCCAACGACTCCCG-AAAGTCGAGG-TGACCC-GAAAtagtgtgacc
gi|5 : AA--C-A-TAAGTA--AAC-AATAA--CAAC-AGA--TAAA--TAC-------CAATAACT-AACG-A-T------AT-TTA--ACTATATAATACAGC--TATTTACA-TATCA-TT-AG-AGGATAGG-A-TGGAT-AAACTA------T--AAAACAATTCGT--AG---C-GATT-TGTG-T-AAATTT--GT-A-AC------------------AAATTTCAAC-TT-G--CCGG-TCCACCT-TG-AGTTTGGCTTA-CG-TATCGATT-----------------A-G-G--TG-C-AAGTACAAAC-G-T---AGTTT--CGG-CC-TTT-TTCAAAG-TC-TGCTCCT--ACT--TTCGC-TCGGGCCTTAAG--TTTTTTTT-AA-TTATC-AAAT--AATAAATA--TT-ATC-------T-AATG-TACTCT----GTTGT-T-GT-------TGC--AATTT--GAA--GC-CTTTGTGCGATAAACCCGGGT-GTT--AA---A-TAT-A-CAACGTAA----GT----GTAATT--ATCA-
gi|5 : atctactctatggagaaaccatatcaaacggtaccgtcccagttcatagtttcaaaacaaacgcggaccgcacttatttgtgtcaatataaatttaaattttaaaaaaaaaagagaggggggggggtatcgccgtaaaaaatggggggggtttgggtcgatcttctaaaaaTAAACCCGGGT-GTTAAATATACAACGTAAGTGTAATTATCAGGAGATTG---T--------AATG----------ATGAG-----AAAAggagattgtaatgatgagaaaa
gi|6 : atctactctatggagaaaccatatcaaacggtaccgtcccagttcatagtttcaaaacaaacgcggaccgcacttatttgtgtcaatataaatttaaattttaaaaaaaaaagagaggggggggggtatcgccgtaaaaaatggggggggtttgggtcgatcttctaaaaaaacataagtaaacaataacaacagataaataccaataactaacgatatttaactatataatacagctatttacatatcattagaggataggatggataaactataaaacaattcgtagcgatttgtgtaaatttgtaacaaatttcaacttgccggtccaccttgagtttggcttacgtatcgattaggtgcaagtacaaacgtagtttcggcctttttcaaagtctgctcctactttcgctcgggccttaagttttttttaattatcaaataataaatattatctaatgtactctgttgttgttgcaatttgaagcctttgtgcgaAAAGACAATAAGCAA--G-TCTAAGTA--A-C-AATAAG-TAAC-A-A--TAA-------------------GC-AACA-A-T------AT-TTA--ACTAT-T--TAGGGC--TATTTACA-TATCA-TT-TG-AGCATAGG-AATGGAT-AAAATA------A--AAAACAAATC---------------------T-AAG----------ACT-AG-C-------------GATTTGAACATT-G--CCGG-CTGACCT-GG-AGCT-GGTCTG-TG-TATCGTTC-----------------G-G-GGGTG-T-AAGTA-------------GTTT--CGG-CC-TTT-TTTAAAG-TC-GACCCCT--AGT--T-CGC-TCGG-CCTTA--------------------T-AAAT--GATAAATG--TTCATT-------T-AATG-TACTCT----GGTGT-T-GTTTTTA-TTGC--AA-TT--GAA--GCTCTTTGTGCGATAAA------------------A-TGC-A-A--CGTAA----GT----ATAATT--ATGA-AAC-GCAC-T--TTGTACAC-AT-GCGATCACAAGATT-A--TGAGAC-T-TT--AACGAA---AAAATTATT-TTAAAATGGGGA-GTA-------TAGCGTAAA-------ATCAGGAGATTT---T--------AATG----------ATGAA-----AAAA
gi|6 : ggttctgctaAAAGACAATAAGCAA--A-TATAAGGA--A-C-AATAAG-TAAC-A-G--TAAG--AAA-------TGAAAACTCAACT---T------TT-TTATTACTAT-C--ACCGAT--TATTTTCT-CATCA-TT-AA-Atcaggagattttaatgatgagaaaataatcggtgatagtaataaaaaagttgagttttcatttcttactgttacttattgttccttatatttgcttattgtcttttagtgttacc
gi|7 : ggttctgctaaaagacaataagcaagtctaagtaacaataagtaacaataagcaacaatatttaactatttagggctatttacatatcatttgagcataggaatggataaaataaaaaacaaatctaagactagcgatttgaacattgccggctgacctggagctggtctgtgtatcgttcgggggtgtaagtagtttcggccttttttaaagtcgacccctagttcgctcggccttataaatgataaatgttcatttaatgtactctggtgttgtttttattgcaattgaagctctttgtgcgataaaatgcaacgtaagtataattatgaaacgcactttgtacacatgcgatcacaagattatgagactttaacgaaaaaattattttaaaatggggagtatagcgtaaaatcaggagattttaatgatgaaaaaatcaggagat-GATT-TGTG-T-AA-TTT--GT-A-ACC-AGACTA-CCGT---GGAA-TTTCAACATT-G--CCGG-CCGACCT-TG-AGCT-GGCTTA-CA-TATCGATCAA---------------G-G-GG-TG-T-A-GTACAG-C-G-T---AGTTTTTCG--C--TTT-TTCAAAG-TCCGGCTCCT--ACT--T-CGC-TCGG-TCTTAAG--TTTTTT---CA-TTATC-AAATTAAATAAATG---TTATT-------TAAATGTTACTCT----GTTGT-T-GTTTTTGTTTGT--AA-TT--GAATGGCTCTTTGTGTGATAAACCCGGGT-GTTAAAA---A-TGC-ATC--CGTAA----GT----ATAACTA-ATCA-AAC-GCAC-T--TTGAACAC-GT-GC-ATCGCACGATT-A--TGAGTTGT-TT--AAGGAAGAGAAGATTATT-TTAAACCGGGGA-GTT-------TAGCGT-AA-------ATCGAGAGAGTTGTAT--------GATGAAGAAAATGAATGAG-----AAAACA-ATC-GGCG-ATTAAGTGAtagtgttacc
gi|7 : agAAAGACAATAAGCAAGTCGAATTATT---A-C-AATAAG--GAC-T-GCTTAAA--GGT-------CAATAAGT-AACG-A--------AT-TTtaaattaaaaaagtcgagttttcatttcataaaacatttcgcaagtgtcccgatcatcagaaattcgttacttattgacctttaagcagtccttattgtaataattcgacttgcttattgtcttttagtag
gi|8 : aggatttgtgtaatttgtaaccagactaccgtggaatttcaacattgccggccgaccttgagctggcttacatatcgatcaaggggtgtagtacagcgtagtttttcgctttttcaaagtccggctcctacttcgctcggtcttaagttttttcattatcaaattaaataaatgttatttaaatgttactctgttgttgtttttgtttgtaattgaatggctctttgtgtgataaacccgggtgttaaaaatgcatccgtaagtataactaatcaaacgcactttgaacacgtgcatcgcacgattatgagttgtttaaggaagagaagattattttaaaccggggagtttagcgtaaatcgagagagttgtatgatgaagaaaatgaatgagaaaacaatcggcgattaagtgataaattaaaaaagtcgagttttcatttcataaaacatttcgcaagtgtcccgatcatcagAAAGACAGTAAGCAA--G-TCTAAGTA--A-C-AATAAG-CAAC-A-A--TAAA--TAC-------CGGTAAGT-AACG-A-T------AT-ATA--AC-------TACAGC--TATTTACA-TATC-----------ACAGG-AATGGAT-AAAATA------T---------ATC-T--AG---C-AATT-TGTG-T-GAATT------------------ACCAT---GGA-------------G--CTGG-C------------------CTG-TG-TATCGATC-----------------A-ATGG-TG-C-AA---------G-T---AGTT----------------------TC-GGCTCCT--AGT--T-CGT-TCGG-CCTTAAG---TTTTT---AT-TTATC-AAATT-AATAAATG--TTTATT-------T-AATG-TACTCT----GTTGC-T-GTTCTTG-TTTC--AA-TT--GAA--GCTCTTTGTGCGATAAACCCGAGT-GTTA-AA---A-TGC-A-A--CGTAA----GTATCGATAATT--ATCA-AAC-GCAC-T--TTGAACAC-AT-TCTATCGCAAGATT-A--TGACAC-T-TT--AATGAAGAGAAGATCAGT-TTAAACTGGGGA-GTT-------TAGCGTAAA-------ATCAGGAGATTT---T--------AAAG----------ATGAG-----AAAATA-ATC-GGCG-AT--AGTGAtagtag
gi|9 : c--TTTATC-------T-AATG-TACTCT----GTTGT-T-GTTTTTG-TTGC----------------TCTTTGTGCGAAAAACCCGGGT-GTT--AA---AATGC-A-C--CGTAA----GT----ATAATT--ATCA-AAC-ACAC-T--TTGAACAC-GT-GCAAT-G-AAGATTGA--TGAGAC-TGTT--AAT--AGAGAAGATTATT-GTAA--CGAGGA-GTT-------T-GCAT-AA-------ATCAGGAGATTT---TTGATGAGAAATG----------ATGAG-----AA---A-ATC-GGCG-AT--AGTGACTG--AACAACC---TTT--TTT-T----------TT-------------A------AACCCAA-GACTCCCG-AAAGTTGAGG-TGA-CC-GAAAtaa
gi|9 : AAAGACAATAAGCAA--A-AATAAGTA--A-C-AATAAG---ACTA-C--TAAA--AGA-------CAATAAGC-ATTG-A-A------GT-CTA--AGTA--T--TACAtacctaatgactgtacatgtcttgccttggttaaatctggtaaatgcttttttaatatacacattcgttatatatttgacattttagcagtcttattgtaatacttagacttcaatgcttattgtcttttagtagtcttattgttacttatttttgcttattgtcttttagtgtatc
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTCGCCCCTTCCTTCTTCATAATGCTACCACCACCACCATTCTTTACAACTTATTGCAGTGAACACAGACGCACCATTTTTGCTTTTTTAATATTTATTCTTGCAGAAGGATTTTCAACGATATTCTGCGAAAATGAAGTCCCATTTCTACTCTTATTTCCTCATAAATATCAACAAAGTTGTCGCATCCTTTGCAACACCGCGTTGTTTCAACATGTTCGTAAATAAACTCGAATACGTCGTTGGAGATCTAGATACTGAAGCGGAGAAACCATATCAAACGTGATGCAACCATTTCAATGTGCAATTAGGTGCGGCTGTAATTATTTGTGTCAGTCTCTTTTTCAATGTATGAA
Unaligned ( gi|21 ): AACCATATCAAACGTGATGCAACCATTTCAAAGTGCAATTAGGCGCGGCTGTCATTATTTGTGTCAGTATCTTTTTCATGTATGAAATTAAG
Unaligned ( gi|22 ): ACCATATCAAACGTGATGCAACCATTTCAATGTGCAATTAGGTGCGGCTGTAATTATTTGTGTCAGTCTCTTTTTCATGTATGAAATTAAG
Unaligned ( gi|25 ): TTATTATCACACGTTCGTTACTTTCGTGTCTTTTAGTAGTCTTTAGTTATTGTTGCTTATTGTCTTTTA
Unaligned ( gi|27 ): CAACTTATTGCAGTCAAGACAGCGCACCATTCTTGCTGATATGTTTCTTGCAGAATGATTT
Unaligned ( gi|29 ): ATTCTCATAATATCTAACCTACGAAGTGTCGCATCCTTTGCAACACCGCATTGTTTCAAC
Unaligned ( gi|30 ): TCCTCAAAATTATCTACAAAGTGTCGCATTCTTTGCAACACCGCGCTGTGTCAACAAA