lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 11 111111 111111111111 111111111 44444444444444444 22222222222 1 11 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 66666666 111111111 11 111111 1 11111 22 11111 222 1 1111 11111111 22222 11 11 2222 111 1 1 1 11 1 1111111 333333333 1 44 111 1 555555555555555555555555555555555555555555 1 222222222222 11111111111 22 111 1
lowQualScore : 0 4 111 66 000000 3 888888888888 44 3 55 3 666 2 4 666666666 55 33333333333333333 777 777 44444444444 44 3 4 3 7 7 33 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 77777777 66 0 888888888 4 4 00 1 7 999 4 4 4 4 222222 0 5 0 5 5 00000 5 5 5 88 888 88888 999 0 5 0000 5 0 33333333 5 66 33333 5 11 66 11 66 66 5 7777 5 4 777 66 5 0 5 66 5 0 5 0 0 888 33 1 1 5 5 5 1 77 7777777 77 777777777 1 1 1 55 6 6 6 5 000 0 5 77 6 444444444444444444444444444444444444444444 66 2 888888888888 4 4 0 4 99999999999 4 4 4 66 777 111 4 55 4 777 4 4 55 9 55
lowQualScore : . . ... .. ...... . ............ .. . .. . ... . . ......... .. ................. ... ... ........... .. . . . . . .. . .................................................................................... . ........ .. . ......... . . .. . . ... . . . . ...... . . . . . ..... . . . .. ... ..... ... . . .... . . ........ . .. ..... . .. .. .. .. .. . .... . . ... .. . . . .. . . . . . ... .. . . . . . . .. ....... .. ......... . . . .. . . . . ... . . .. . .......................................... .. . ............ . . . . ........... . . . .. ... ... . .. . ... . . .. . ..
lowQualScore : 6 3 444 66 555555 6 666666666666 22 6 00 6 444 9 0 000000000 55 99999999999999999 000 000 55555555555 22 1 3 6 3 3 88 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 00000000 11 1 444444444 1 4 00 7 0 000 4 3 4 4 888888 1 0 1 4 0 99999 0 0 0 88 888 00000 999 2 0 6666 7 7 44444444 0 99 11111 0 99 99 99 99 99 0 6666 0 2 666 99 0 0 0 99 0 0 0 0 4 888 66 7 4 7 7 7 7 99 9999999 99 333333333 7 7 0 00 7 7 0 7 000 9 7 99 7 000000000000000000000000000000000000000000 99 8 999999999999 4 0 8 0 00000000000 0 0 0 00 000 000 5 55 0 000 0 0 55 1 55
consensus : GTTCACGAAAA---TTG-CTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--ATC-ATA---AAGTCAATTCNTACA-GCC---------GATCA--TTC-------N---------C---TT---GC----------GTAAGAATAATTTC--AAGTACG-ACTTATCAT-T-T-AATGCATAA--ATCATT-A-TCN---GTA---CGACTTATCA--TTTAATGCATAA--ATCA----TCG-----TCCGTA-------A--GTT--A----AGTTTATGTCCAGTT-CA-A---ATAT--AATTTTAGAGTACCGTAGATGCTATCTTCGAT-TGATTTTAGAGTACCGTAGATGCTATCTTCGATTGA-TAC-GAAGCTA-GTAA-GTGGCATATA------TATTATGCAAC-AAAATACAAA-GT--T--AAACG-TGATTT-TG-CT-GG---GGT---TTTTTTCCCTCTAAAA-G----TTT-GGCT-TTGAA-ATGCCA-C--AT--GCAGCTT-AT--AA--ACACC--GAC--TATAT--C-AAAATGGGGC-ATTGGAATT--TT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TTCAT-TTGTTAATT-AA-GTAAACA--AAAAAA--AAAA--AAAAACAAA---CCACCAATACTTATTTGTATATA-A-TGAACG-TCACAA---GTGTTAT-GAT--AA-GA-TTT-AAAA--CAA-----------TCTCCA----G-T----CT--TTTTCTGTATTTTATTTTCGGG------------C-ATG-TTAATTTTTG-TTC-----------GGGCAGG-G-AA-AATTGATGGAA---ATG---CCT--GC-CCGAA---GGGCATGT-AT-TCAA--AAAAAGTTTTC--GTGAAGACT
Reference ( gi|1 ) : GTTCACGAAAA---TTT-CTTT------TCCTT-ACA------------ATCATC-AGAC-ATGTTT--ATC-ATA---AAGTCAATTCATACA-GCC---------GATCA--CTC-------A---------C---TT---GC----------GTAAGAATAATTTC--AAGTACG-ACATATCAT-T-T-AATGCATAA--ATCATT-A-TCT---GTAG--CGTTNTATCA--TTTAATGCATAA--ATCA----TCA-----TCTGTA-------A-CGTT--A----AGTTTGTGTCCAGTT-CATATTGATAT--AATTTTAGAGTACTGTAAATGCTATCTTTGAT-TGGNTTTAGAGTACTGTAGATGCTATCTTTGATTGG-TAC-GAAGTTA-GTAA-GTGGCATATA------TATTATGCAAC-AAAATACTAA-GT--T--AAACG-TGATTT-TG-C--GG---GGT---TTTTTTTCCTTTAAAA-G----TTT-GGCT-TTGAA-ATGCCA-C--AT--TCAGCTT-AT--AA--ACACC--GAC--TATAT--C-AAAATGGGGC-ATTGGAATG--TT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TTCAT-TTGTTAATT-AA-GTAAACA--AAGAAA--GAAA--AAAGACAAA---CCATCAATACTTATTTAT-CATA-A-TAAACG-TCACAA---GTGTTGT-GAT--AA-GAATTT-AAAA--CAA-----------TCTCCA----G-T----CT--TTTTCTGTATTTTGTTTTTGGG------------C-ATG-TTAATTTTTG-TTC-----------GGGCAGG-G-AA-AATTTTTGGAA---ATG---CTT--GC-CCGAA---GGGCATGT-AT-TCAA--AACAAGTTTTC--GTGAAGACT
gi|3 : GTTCACGAAAAAA-TTG-CTCT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--ATC-ATA---AAGTCAATTCTTACA-GCC---------GATCA--CTC-------T---------C---TT---GC----------ATAAGAATAATTTC--AAGTACG-ACTTATCAT-T-T-AATGCATAA--ATCAT----------------CG-------------AATGCAT-G--TTCAGT--TTT-----TCCCTA----------GTTGCA----AGTTTATGTCCAGTT-C------ATAT--AATTTTAGAGTACCGTAGATGCTGTCTTCGAT-TG
gi|2 : attttGTTCACAAAAAAAATTG-TTTT------TCCTT-ACA------------ATCATCCAGACCATGTTTTGATCCATA---AAGTCA--TCTTACA-GCCCGATAAACTAATCT--CTC-------A---------T---TT---GCC---------ATAAGAATAATTTTTAAAGTGTGGACTTATCAT-T-TTAATGCATAA--ATCATTCA-TCT---G-----CG-------A--T--AATAAAGAACGATGG----TCAGTTTTTCCCTA-------AGTGTG--ATCATAGTTTATGTCCAGTT--ACACT---AT--AATTTTAGG--------------ATCTC--AT-TCAGTTCG------TGTGGACGCT-----TGATATG-TA--GAAGTCCTGTA---TAG---ATA-------ATTATGCAAC-AAAATACAAA-GT--TAAAAACG-TGATTT-TGAC--GGATTGGTGGAGTTTTCCCATCTAAAA-G----TTTGGGCTATTG-A-ATGCCA-CCAAT--GTAGCTT-ATA-AA--ACACCAGGAC--AATAT--C-AAAATGGGCC-ATTTAAATT--TTTAAAAG-TCGCGACTTGGCC-ATG-C-TA-GATCTTTTGGGGACCTTAAAACTTTCAT-ATGTTAATT-AA-GT---CA--AACAAA--AAAA--AAAAAC------CCACCCATACTTATTTGTATATA-ATTGAACG-TCA-AA---GTGTGAT-GAA--GA-GA-------------------------------------------T--TTTTTTA--------TTTCGGGTC----------C-ATG-TTAATTTTTGATTC------------TGCAGT-G-GA-AATGACTGGAA---ATGA--CCT--GC-CCAAAGACGGGCATGTGATATTAA--AA-AAGTTTTCCAATGAAGAatatgaagctagcaagtggcatatatattatgcaacaaaatacaaagttaaacgtgatttctgctggggtttttccctctaaaagtttgaaatatgccacatgtagcttataaacactgactatatatcaaatggcattgaaaggttttaaagtggcacttgcatgccatagatgtttggacataaatctttcatattgttttaatgttgaccaaaaaaaaaaccaaaaaaaacccccacaatacttacttgtatatagatgaacgttcacaagtgttatgatgagattttaaaaacaagcccttttttttttccattaggttttcttttttttttatttcctttttgtttttattttttattttttttgggggggggcagggaagaatgatgagaaatgcctgagcccgaaggcatgtattcaaaaaagttttcgtgaacggac
gi|16 : taaattttGTGCACGAATA---TTG-CTTT------TCCTC-ACA------------ATCATC-GGAC-ATGTTC--ATT-ATA---AAGTCAATTCGTACA-GCC---------AATGA--TTT-------T---------C---TA---GC----------GTAAGAATAAATTC--AAGTACA-AC
gi|21 : tGTGCAAGAAAA---TCA-TTTTCCAGAATCCTTTATC------------GTCATC-AGAC-ATGTTC--ATT-ATA---AAGT
gi|4 : taattttTTCA-AAAAA---TTTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--ATC-ATA---AAGTCAATTCTTACAGGCC---------AATCA--CTC-------T---------C---TT---GC----------ATAAGAATAATTTC--AAGTACG-ATTTATCAT-T-T-AATGC--AA--ATCATC-G-TCT---GTAGAACG--ATGTCAGTTTT---------------------------TCCCTA----------GTT--GC---AATTTATGTCCAGTT-CA-----ATAT--AATTTTAGAGTACCGTAGATGCTATCTTCGAT-TG
gi|10 : CACGAAA-----TG-CTTT------TCCTT-ACA------------GTCAGT-GGAA-A-GTT---ATC-A-A---AAGTCAATTCATAC--GCC---------GATCA--TTCTCGT---A---------CAGATT---GC-----------TAAGAATAATTTT--AAGTTCG-ACTTCTAGTAT-T-AATGCA-AA--ATatacgaactagtaagtggcattatattatgcaacaaataccaaagtaacttgattttgctgggggttttccctctaaaagtttggctttggaatgccacatgtagcttataagaacaccgacaatatcaaaatggcattgaattttaaaaatgcacttgcagcataagattttgggactaaaacttcatatgttaattaagtaaacaaaaaaatttaaaaaaaacccaccaatacttatttgtatataatgaacgtcacaagggttatgataagatttaaaaacaagctctagtctttatctgtattttattttcgggcatgttaatttttgtatgggcatggaaaattgatggaaatgcctgcccgaagggcatgtattcaaaaaaagttttcgtaaagac
gi|12 : CAGGAAAG---TTG-CTTT-------CCTT-ACATGTATATGTATAATCATT-AGAC-GTGTTT----------------C--TTCATACA-TCT---------GACCA--TTCTTATGGCA---------C---TTCCTGT----------GCAAGAATACTTAT--AA-TA---ACTTAACAA-T-T-AATGCATAA--Atgaacaatgtcagagtttttccctgttgcaagttgtgtccacttcatatctgaa
gi|5 : atgtactaattttatgAAAA---TTG-CTTT------TCCTT-ACA------------ATCATT-GGAC-ATGTTT--ATC-ATA---AAGTCAATTCATACA-GCC---------GATCA--TTC-------C---------C---TT---GC----------GTAAGAATAATTTT--AAGTATG-ACTTATCAT-T-T-AATCTGTAA--A
gi|9 : AAAA---TTG-CTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--ATC-ATA---AAGTCAATTCATACG-GCC---------GATCA--TTC-------T---------C---TT---GC----------GTAAGAATAATTTC--AAGTACG-ACATATCAT-T-T-AAgatttcccctagttgcaagattgtgtccagttcatatagatataattttagagtaccgtagatgctatctttgatttgaagctagtaagtggcatatatattatgcaacaaaatacaaagttaaacgtgattttgcggggggttttccctatgccacatgcagcttataaacaccgactatatttaaaatgcattggaattttaaagtgcacttgcagcaaaagattttgggactaaaacttcatttgttaattaagtaaacaaaaaaaagacaaaccaccaatacttatttatatataatgaacatcacaagtgttattgataagatttaaaaaacaatctctagtctttttctgtattttatttttgggcatgctaattttgtttgggcagggaaaaacttgtggaaatgcctgtccgaagggcatgtattcaaaaaaagttttcgtgaagact
gi|15 : AAAA---TTG-CTTT-------CCTT-TCA------------ATCATC-AGAC-GTG--T--ATT-ATA---A--TTAATTCTTACA-ACT---------GATCATTCTC-------ATGGTCACCTC---TT---GCATATTTAAGAATAAGAATAATCAT--AAGTACA-ACgaacgatgtcagagtttttccggagttgtaagtctgtgtatataaatataattttagagtactgcagatgctctctttgattgatacgaagctagtaaatggcatatacacaaagttaaacatgattttgtggggggttttccctctaaaagttcggcttataaacaccgactatatcaaaatggcattggaattttagggatac
gi|7 : ---TTG-CTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTC--ATC-ATATTAAAGTCAATTCATACA-GCC---------GATCA--TTC-------T---------C---TT---GC----------ATAAGATTAATTTC--AAGTATG-ACTTATCAT-T-T-AACGCATAA--ATCATT-G-TCT---GTAt
gi|8 : TAAGAATAATTTC--AAGTACG-ACTTATCAT-T-TCAATGCATAA--GTCG---A-TC------AG--AGTTTT-TCC--CT---------A--GTC----------------GCA-------A-------------GTTTATGTCCAGTT-C------ATAT--AATTTTAGAGTACCGTAGATGCTATCTTCGAT-TGaagaacgacgttagttttatgtccagttcatataattttagagtaccgcatctttgattgatacaaagctagtaagtggcatatatattatgcaacaaaatgcaatgttataaacgtaattttgctgggggttttctctctaaaagttaatttggctttgaaatgtcacatgcagcttacaaacatcgactatatcaaaatggcattaaaattttgaagtgcacttgcagcatagattttggga
gi|7 : TTC--A--TACA-GCCGATCAT-TCT-CTTGCATAA--G--ATT-AATTTCAAGTA---TGACTTATCA--TTTAACGCATAA--ATCA----TTG-----TCTGTAAAGAACGA-CGTT--A----GTTTTATGTCCAGTT-C------ATAT--AATTTTAGAGTACCG-------CATCTTTGAT-TGatacgaagctagtaagtggcatatatatactttgaaatgccacatggagctttattaaaacaccgaatatatatcaaaatggcattgaaattttaatgtgcacttgcagcatagaatttgggactcaaacttcatttttaattaagtaaacaataaaaaaaaaaacaccaatacttgtatataatgaacgtcacaggtgttatgata
gi|9 : ttgcttttccttacaatcatcggacatgttcatcatattaaagtcaaTTC--A--TACG-GCCGATCAT-TCT-CTTGCGTAAGAATAATT---TCAA--GTA---CGACATATCA--TTTAA-GAACGAT-GTCAGAGTTTT-----TCCGGA----------GTTGTA----AGTCTGTGT--------ATATAAATAT--AATTTTAGAGTACTGCAGATGCTCTCTTTGAT-TGatacaaagctagtaagtggcatatatattatgcaacaaaatgcaatgttataaacgtaattttgctgggggttttctctctaaaagttaatttggctttgaaatgtcacatgcagcttacaaacatcgactatatcaaaatggcattaaaattttgaagtgcacttgcagcatagattttggga
gi|4 : aaaattgcttttccttacaatcatcggacatgtttatcataaagtcaaTGCATAAGAATAATT---TCAA--GTA---CGATTTATCA--TTTAATGCA--A--ATCA----TCG-----TCTGTAGA-----A-CGAT--GTC--AGTTTTTCCCTAGTTGCA-ATTTATGTCCAGTTC---AATA---TAA------------------TTTTAGAGTACCGTAGATGCTATCTTCGATTGA-TAC-GAA-CTA-GTAA-GTGGCAT-TA------TATTATGCAAC-AAA-TACCAAAGT------AACT-TGATTT-TG-CTGGG---GGT---TTTC---CCTCTAAAA-G----TTT-GGCT-TTGGA-ATGCCA-C--AT--GTAGCTT-AT--AAGAACACC--GAC--AATAT--C-AAAATGG--C-ATTG-AATT--TT--AAAAAT-GC-ACTTG--C-A-G-CATAAGATTTT---GGGAC--TAAAAC-TTCAT-ATGTTAATT-AA-GTAAACA--AAAAAATTTAAA--AAAAAC------CCACCAATACTTATTTGTATATA-A-TGAACG-TCACAA---GGGTTAT-GAT--AA-GATTTA-AAAA--CAA-----------GCTCTA----G-T----CT--TTATCTGTATTTTATTTTCGGG------------C-ATG-TTAATTTTTG-TAT-----------GGGCATG-G-AA-AATTGATGGAA---ATG---CCT--GC-CCGAA---GGGCATGT-AT-TCAA--AAAAAGTTTTC--GTAAAGACatacgaagctagtaaatggcatatacacaaagttaaacatgattttgtggggggttttccctctaaaagttcggcttataaacaccgactatatcaaaatggcattggaattttagggatac
gi|3 : ttcaaaaaatttgcttttccttacaatcatcggacatgtttatcataaagtcaattcttacaggccaatcactctctTGCATAAGAATAATT---TCAA--GTA---CGACTTATCA--TTTAATGCATAA--ATCA----TCG-----AATGCA---------TGTT--C----AGTTTTTCCCTAGTT----------GC--AAGTTTA------TGT-----CCAG--TTCATATAATTTTAGAGTACCGTAGATGCTGTCTTCGATTGA-TAT-GAAGCTA-GCAA-GTGGCATATA------TATTATGCAAC-AAAATACAAA-GT--T--AAACG-TGATTTCTG-CT-GG---GG-----TTTTTCCCTCTAAAA-G----TTT-G------AAATATGCCA-C--AT--GTAGCTT-AT--AA--ACACT--GACTATATAT--C--AAAT--GGC-ATTGAAAGGTTTT--AAAG-TGGC-ACTTG--C-ATGCCATA-GATGTT---TGGACA-TAAATCTTTCATATTGTT--TT-AATGTTGACC--AAAAAA--AAAACCAAAAA-AAACCCCCA-CAATACTTACTTGTATATAGA-TGAACGTTCACAA---GTGTTAT-GAT--GA-GATTTTAAAAA--CAAGCCCTTTTTTTTTTCCATTAGG-TTTTCTT--TTTTTTTTATTTCCTTTTTGT----------------TT-TTATTTTTTA-TTTTTTTTGGGGGGGGGCAGG-G-AAGAATGATGAGAA---ATG---CCTGAGC-CCGAA----GGCATGT-AT-TCAA--AA-AAGTTTTC--GTGAA
gi|5 : attttgttcacgaaaaaattgctcttccttacaatcatcggacatgtttatcataaagtcaattcttacagccgatcactctctTATCA--TTTAATCTGTAA--AG-A----TTT-----CCCCTA----------GTTGCA----AGATTGTGTCCAGTT-CATATAGATAT--AATTTTAGAGTACCGTAGATGCTATCTTTGAT-Tcggac
gi|5 : aaaattgcttttccttacaatcattggacatgtttatcataaagtcaattcatacagccgatcattcccttgcgtaagaataattttaagtatgactTTTAGAGTACCGTAGATGCTATCTTTGATT-----T-GAAGCTA-GTAA-GTGGCATATA------TATTATGCAAC-AAAATACAAA-GT--T--AAACG-TGATTT-TG-C--GG---GGG---GTTTTC-CCT---------------------------ATGCCA-C--AT--GCAGCTT-AT--AA--ACACC--GAC--TATAT--TTAAAATG---C-ATTGGAATT--TT--AAAG-T-GC-ACTTG--C-A-G-CAAAAGATTTT---GGGAC--TAAAAC-TTCAT-TTGTTAATT-AA-GTAAACA--AA--------AA--AAAGACAAA---CCACCAATACTTATTTATATATA-A-TGAACA-TCACAA---GTGTTATTGAT--AA-GA-TTT-AAAAAACAA-----------TCTCTA----G-T----CT--TTTTCTGTATTTTATTTTTGGG------------C-ATG-CTAA-TTTTG-TTT-----------GGGCAGG-GAAA-AACTTGTGGAA---ATG---CCT--GT-CCGAA---GGGCATGT-AT-TCAA--AAAAAGTTTTC--GTGAAGACTtgaagctagtaagtggcatatatattatgcaacaaaatacaaagttaaacgtgattttgcggggggttttccctatgccacatgcagcttataaacaccgactatatttaaaatgcattggaattttaaagtgcacttgcagcaaaagattttgggactaaaacttcatttgttaattaagtaaacaaaaaaaagacaaaccaccaatacttatttatatataatgaacatcacaagtgttattgataagatttaaaaaacaatctctagtctttttctgtattttatttttgggcatgctaattttgtttgggcagggaaaaacttgtggaaatgcctgtccgaagggcatgtattcaaaaaaagttttcgtgaagact
gi|7 : aaaattgcttttccttacaatcattggacatgtttatcataaagtcaattcatacagccgatcattcccttgcgtaagaataattttaagtatgacttatcatttaatctgtaaagatttcccctagttgcaagattgtgtccagttcatatagatataatTTTAGAGTACCGCA-------TCTTTGATTGA-TAC-AAAGCTA-GTAA-GTGGCATATA------TATTATGCAAC-AAAATGCAAT-GTTAT--AAACG-TAATTT-TG-CTGGG---GGT---TTTCT---CTCTAAAA-GTTAATTT-GGCT-TTGAA-ATGTCA-C--AT--GCAGCTT-AC--AA--ACATC--GAC--TATAT--C-AAAAT--GGC-ATTAAAATT--TT--GAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGA
gi|8 : ttgcttttccttacaatcatcggacatgttcatcatattaaagtcaattcatacagccgatcattctcttgcataagattaatttcaagtatgacttatcatttaacgcataaatcattgtctgtaaagaacgacgttagttttatgtccagttcatataatTTTAGAGTACCGTAGATGCTATCTTCGATTGA-TAC-GAAGCTA-GTAA-GTGGCATATA------TAT
gi|9 : taagaataatttcaagtacgacttatcatttcaatgcataagtcgatcagagtttttccctagtcgcaagtttatgtccagttcatataatTTTAGAGTACTGCAGATGCTCTCTTTGATTGA-TAC-GAAGCTA-GTAA-ATGGCATATA------CA-----CA-----------AA-GT--T--AAACA-TGATTT-TG-T--GG---GG----GGTTTTCCCTCTAAAA-G----TTC-GGC---------------------------TT-AT--AA--ACACC--GAC--TATAT--C-AAAAT--GGC-ATTGGAATT--TT--Aactttgaaatgccacatggagctttattaaaacaccgaatatatatcaaaatggcattgaaattttaatgtgcacttgcagcatagaatttgggactcaaacttcatttttaattaagtaaacaataaaaaaaaaaacaccaatacttgtatataatgaacgtcacaggtgttatgata
gi|6 : aaaattgcttttccttacaatcatcggacatgtttatcataaagtcaattcatacggccgatcattctcttgcgtaagaataatttcaagtacgacatatcatttaagaacgatgtcagagtttttccggagttgtaagtctgtgtatataaatataatTCTTTGATTAGATACCGAAGCTA-GTAAAGTGGC-TAAC------TAT-ATGCAACGAAAATACAAA-GT--T--TAACGGTGATTT-TT-CT-GG---GGT---TTTC---CCTCTAAAAAG----TTT-GGCT-TTGAA-ATGCCATC--ATGACC--CTT-AT--AA--ACACCG-GAC--TATAT--C-AAAA-ATGGCAATAGGAATA--TT--AAAT-T-GC-ACTTG--CAA-G-CATA-TA----------AC--TCAA---TT--T-TTACTAA---GA-GAAAACA--AAACAA--AAAG--AAAGACAAAC--CCACCAATACTTATTTGTATATA-A-TGCA-G-TCATAA---GTGCT-T-TAT--AA-G-ATT---AAA--CAA-----------TCTCCA----GAT----CTAATTTCTTATA-TTTATTTATCGG------------CAATGATTAA--GTTG--TC-----------GGGCAGGCG-GA-AATAT---GAATAGATGCGCCTT--GCACCGAA-----GCATAT-A--TCAA--AAAAAGTTTTC---TGAAGAgggatac
gi|18 : TTGC-TAC-AAAGCTA-GTAA-GTGGCATATACATGTATATTATGCAAC-AAAATGCAAA-GT--T--AAACA-TGATTT-TG-CT-GG---GGT---TTTTCT--CTCTAAAA-G----TTact
gi|8 : CT-TTGAA-ATGCCA-C--AT--GGAGCTTTATTAAA--ACACC--GAA--TATATATC-AAAATGG--C-ATTGAAATT--TT--AATG-T-GC-ACTTG--C-A-G-CATA-GAATTT---GGGAC--TCAAAC-TTCAT-TT-TTAATT-AA-GTAAACA--ATAAAA--AAAA--AAA----------CACCAATACTTG--TAT--ATA-A-TGAACG-TCACAG---GTGTTAT-GAT--Aaa
gi|20 : taagaataatttcaagtacgacttatcatttcaatgcataagtcgatcagagtttttccctagtcgcaagtttatgtccagttcatataattttagagtaccgtagatgctatcttcgattgatacgaagctagtaagtggcatatatataAG-T-GC-ACTTG--C-A-G-CAAA-GATTTT---GGGAC--TAGAAC-TTCAT-TTGTTAATTGAA-GTAAACATTACTAAA--CAAA--ACA-ACAA
gi|11 : AACA-TTACAATATGTGCTAT-CATTAAACAAACTT-AAAA--TGT-----------T-----------T----CT--TTTTC---ATCTT--TTTTGGGGGAAGAGGGGGGC-ATG-TTGATTTTTT-ATC-----------GGGCAGG-T-GA-AATTGATAAAA---AGA---CCT--GC-CCGAA---GGGCATGT-GT-TCAA--AAAAAGTTCTC--GTGAAGACc
gi|13 : --CAA-----------ATTTCA----A-C----CT--TTTTCTGTATCTTTTATATAGG------------C-ATG-TTAATTTTTG-TCC-----------AGGCAGG-T-GA-AATTGATAGAA---ACA---CCT--GA-TCGAA---GGGTATAT-AT-TTAATTAAT--GTTTTT--GTGAAGACTcg
gi|14 : CA----G-T----CT--TTTTCTGTATTTTATTTTCAAT------------T-ATG-TTAATTTTTG-TTC-----------GGGCAGA-G-AA-AATTGATGGAA---ATG---TCT--GC-CCGAA---GGGCATGT-AT-TCAA--AAAATGTTTTT--GTGAAGACT
gi|17 : GTATTTCATTTTCGGG------------C-ATG-TTAATTTTTG-TTC-----------GGGCGGG-G-AA-AATTGACGAAA---ATG---CCT--GC-CCAAA---GGGCAGGT-GT-TCAT--AAAAAGTTTTC--GTGAAGACTg
gi|19 : G-TTAATTTTTG-TTC-----------GGGCAGG-G-AA-AATTGAAGGAA---ATG---CCT--GC-CCAAC---GGGCATGT-AT-TCAA--AAAAAGTTTTC--GTGAAGACT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111111111 111111111 22222222222 11 44444444444444444444444444444444444444444444444444444444444444444444444444444444 333333333 111111 111111 33333 2222 11 1111111 111 3333333333333333333333333333 22222222222 11111111111
lowQualScore : 000 999999 3 777777777777 3 3 555 3 3 555 555 1 3 444444444 1 99999999999 55 7777 999999 33 2 3 999 6 66 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222 0 000000000 4 2 44 111111 33 3 6 66 3 1 4 4 4 55 111111 4 4 4 66 66 4 4 3 777 00000 55 4 9999 0 88888 4 4 66 0 4 66 66 4 66 4 66 66 4 0000 4 2 66 66 4 8 4 66 4 8 4 8 777 11 0 5 5 5 5 5 0 5 66 66 3333333 77 5 5 5 888 5 888 5 5 555 66 4444444444444444444444444444 4 2 55 4 4 44444444444 3 3 77777777777 3 3 55 3 555 3 3 3 55 3 666 666 55
lowQualScore : ... ...... . ............ . . ... . . ... ... . . ......... . ........... .. .... ...... .. . . ... . .. . ................................................................................ . ......... . . .. ...... .. . . .. . . . . . .. ...... . . . .. .. . . . ... ..... .. . .... . ..... . . .. . . .. .. . .. . .. .. . .... . . .. .. . . . .. . . . . ... .. . . . . . . . . .. .. ....... .. . . . ... . ... . . ... .. ............................ . . .. . . ........... . . ........... . . .. . ... . . . .. . ... ... ..
lowQualScore : 444 666666 3 111111111111 3 3 444 3 3 888 888 0 6 555555555 0 11111111111 55 1111 666666 99 9 3 222 7 99 4 77777777777777777777777777777777777777777777777777777777777777777777777777777777 5 111111111 3 1 88 888888 22 6 2 11 4 7 0 0 0 55 555555 0 4 4 11 11 4 4 4 888 22222 22 4 4444 1 77777 4 4 11 9 4 11 11 4 11 4 11 11 4 1111 4 7 11 11 4 9 4 11 4 9 4 9 888 99 4 0 0 0 0 0 4 0 99 99 5555555 99 7 7 0 888 0 888 0 7 000 99 1111111111111111111111111111 4 5 55 0 0 55555555555 6 6 33333333333 6 6 00 6 111 6 6 6 00 6 444 444 00
consensus : GTTCACGAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCNTACA-GCC---------GATCACTCTC-----------TTGC-GTA----AGAA------TAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCATT--TCN-GT-----A-CGAC-TTATCA--TTTAA-TGCATAA--ATCA----TCGTCCGTAA------GT-----T--A-AGTTTATGTCCAGTT-CA----AATATAATTTTAGAGTACCGTAGATGCTATCTTCGA-T-TGATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTT-TGCTGG---GG-T---TTTTTCCCTCTAAAA-G----TTTGG-CT-TTGAA-ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAATGGGGC-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AAAA--AAAAACAAA-CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GTGTTAT-GAT---A-AG-ATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACT
Reference ( family-2489 ) : GTTCACGAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCNTACA-GCC---------GATCATTCNC-----------TTGC-GTA----AGAA------TAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCATT-ATCN-GT-----A-CGAC-TTATCA--TTTAA-TGCATAA--ATCA----TCGTCCGTAA------GT-----T--A-AGTTTATGTCCAGTT-CA----AATATAATTTTAGAGTACCGTAGATGCTATCTTCGA-T-TGATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTT-TGCTGG---GGTT---TTTTTCCCTCTAAAA-G----TTTGG-CT-TTGAA-ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAATGGGGC-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AAAA--AAAAACAAA-CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GTGTTAT-GAT---A-AG-ATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACT
gi|1 : GTTCACGAAAA---TTTCTTT------TCCTT-ACA------------ATCATC-AGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACA-GCC---------GATCACTCAC-----------TTGC-GTA----AGAA------TAATTTC--AAGTACG-ACATATCAT-T---T-AATGCATAA--ATCATT-ATCT-GT-----AGCGTT-NTATCA--TTTAA-TGCATAA--ATCA----TCATCTGTAAC-----GT-----T--A-AGTTTGTGTCCAGTT-CATATTGATATAATTTTAGAGTACTGTAAATGCTATCTTTGA-T-TGGNTTTAG--AGTACTGTAGATGCTATCTTTGATT-GGTAC-GAAGTTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-TAAGT--TAAA--CG-TGATTT-TGC-GG---GGTT---TTTTTTCCTTTAAAA-G----TTTGG-CT-TTGAA-ATGCCA-C--ATTCAGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAATGGGGC-ATTGGAA--TGTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAGAAA--GAAA--AAAGACAAA-CCAT--CAATACTTATTTAT-CATA-A-TAAACG-TCACAA---GTGTTGT-GAT---A-AGAATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTGTTT-TTGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TT-T-TG-GAAATG-CT-T--GC-CCGAA---GGGCATG---TATTCAAAACAAGTTTTC--GTGAAGACT
gi|10 : CACGAAA-----TGCTTT------TCCTT-ACA------------GTCAGT-GGAA-A-GTT---AT-C-A-A---AA---GTCAATTCATAC--GCC---------GATCATTCTCGTACAGA----TTGC--TA----AGAA------TAATTTT--AAGTTCG-ACTTCTAGTAT---T-AATGCA-AA--AT
gi|11 : AACA-TTACAATATGTGCTAT-CATTAAACAA-ACTT--AAAA--TGT-----------T-----------T----CT-TTTTC---A--T-CTT-TTT-TGGGGGAAGAGGGGGGCATG-TTGATTTTTT-ATC-----------GGGCAG-G-TGAAA--T-TG-A-TA-AAAAGA-CC-T--GC-CCGAA---GGGCATG---TGTTCAAAAAAAGTTCTC--GTGAAGACtgaacaatgtcagagtttttccctgttgcaagttgtgtccacttcatatctgaa
gi|12 : CAGGAAAG---TTGCTTT-------CCTT-ACATGTATATGTATAATCATT-AGAC-GTGTTT--CTTC-ATA---CATCTGACCATTCTTATG-GC--------------ACTTCC-----------T-GT-GCA----AGAA------TACTTAT--AA-TA---ACTTAACAA-T---T-AATGCATAA--Acg
gi|13 : atgtactaattttatg--CAA-----------ATTTCA----A-C----CT-TTTTCTGTATCT-TTTATAT---AGG-----------CATG-TTAATTTTTG-TCC-----------AGGCAG-G-TGAAA--T-TG-A-TA-GAAACA-CC-T--GA-TCGAA---GGGTATA---TATTTAATTAATGTTTTT--GTGAAGACT
gi|14 : CA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCAAT-----------TATG-TTAATTTTTG-TTC-----------GGGCAG-A-GAAAA--T-TG-A-TG-GAAATG-TC-T--GC-CCGAA---GGGCATG---TATTCAAAAAATGTTTTT--GTGAAGACT
gi|15 : AAAA---TTGCTTT-------CCTT-TCA------------ATCATC-AGAC-GTGT----AT-T-ATA---A-----TTAATTCTTACA-ACT---------GATCATTCTCATGGTCACCTCTTGC-ATATTTAAGAATAAGAATAATCAT--AAGTACA-ACTg
gi|16 : GTGCACGAATA---TTGCTTT------TCCTC-ACA------------ATCATC-GGAC-ATGTTC--AT-T-ATA---AA---GTCAATTCGTACA-GCC---------AATGATTTTC-----------TAGC-GTA----AGAA------TAAATTC--AAGTACA-AC
gi|17 : tGTA--T-TTCATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCGG-G-GAAAA--T-TG-A-CG-AAAATG-CC-T--GC-CCAAA---GGGCAGG---TGTTCATAAAAAGTTTTC--GTGAAGACT
gi|18 : TT-GCTAC-AAAGCTAGTAA-GTG--GCATATACATGTATA-TTATGCAAC-AAAATGC-AAAGT--TAAA--CA-TGATTT-TGCTGG---GG-----TTTTTCTCTCTAAAA-G----TT
gi|19 : G-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-AG-GAAATG-CC-T--GC-CCAAC---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACTaa
gi|2 : GTTCACAAAAAAAATTGTTTT------TCCTT-ACA------------ATCATCCAGACCATGTTTTGAT-CCATA---AA---GTCA--TCTTACA-GCCCGATAAACTAATCTCTCAT-----------TTGCCATA----AGAA------TAATTTTTAAAGTGTGGACTTATCAT-T---TTAATGCATAA--ATCATTCATCT-G--------CGA---TA--A--T--AA-AGAACGATGGTCAGT--TTTTCCCTAA------GTGTGATC--ATAGTTTATGTCCAGTT-AC----ACTATAATTT----------TAGG----ATCTC--A-T-TCAGTTC-----GT---GTGGACGCT---------T-GATAT-G----TAG-AA-GTCCTGTATAGA------TAATTATGCAAC-AAAATAC-AAAGT--TAAAAACG-TGATTT-TGACGGATTGGTGGAGTTTTCCCATCTAAAA-G----TTTGGGCTATTGAA--TGCCA-CCAATGTAGCTT-AT--AA--AACACCAGG-AC--AATAT--C-AAAATGGGCC-ATTTAAA--TTTTTAAAAG-TCGCGACTTGGCC-ATG-C-TA-GATCTTTTGGGGACCTTAAAAC-TTTCAT-ATGTTAATT-AA-GT---CA-AACAAA--AAAA--AAAAAC----CCAC--CCATACTTATTTGTATATA-ATTGAACG-TCA-AA---GTGTGAT-GAA---G-AG-ATTT-----------------------------------------------------T-TTTA-TT-TCGGGTC---------CATG-TTAATTTTTGATTC------------TGCAGTG-GAAA-----TG-ACTG-GAAATGACC-T--GC-CCAAAGACGGGCATGTGATATT--AAAAAAGTTTTCCAATGAAGAg
gi|20 : taaattttAG-T-GC-ACTTG--C-A-G-CAAA-GATTTT---GGGAC--TAGAAC-TT-CAT-TTGTTAATTGAA-GTAAACATTACTAA--ACAA--AACAACAA
gi|21 : GTGCAAGAAAA---TCATTTTCCAGAATCCTTTATC------------GTCATC-AGAC-ATGTTC--AT-T-ATA---AA---GTc
gi|3 : taattttGTTCACGAAAAAA-TTGCTCT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCTTACA-GCC---------GATCACTCTC-----------TTGC-ATA----AGAA------TAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCAT----------------CG--------------AA-TGCAT-G--TTCAGT--TTTTCCCT-A------GT-----TGCA-AGTTTATGTCCAGTT-C------ATATAATTTTAGAGTACCGTAGATGCTGTCTTCGA-T-TGAT
gi|3 : attttTGCATAAGAATAATT--TCAAGT-----A-CGAC-TTATCA--TTTAA-TGCATAA--ATCA----TCGAATGCAT------GT-----T--C-AGTTTTTCCCTAGTTGCA----AGT------TTAT-GT-CC--AG--------TTC-A-TATAATTTTAG--AGTACCGTAGATGCTGTCTTCGATT-GATAT-GAAGCTAGCAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTTCTGCTGG---GG-----TTTTTCCCTCTAAAA-G----TTTG-------AAATATGCCA-C--ATGTAGCTT-AT--AA--A-CACT--G-ACTATATAT--C--AAAT--GGC-ATTGAAAGGTTTT--AAAG-TGGC-ACTTG--C-ATGCCATA-GATGTT---TGGACA-TAAATCTTT-CATATTGTT--TT-AATGTTGACC-AAAAAA--AAAACCAAAAA-AAA-CCCCCACAATACTTACTTGTATATAGA-TGAACGTTCACAA---GTGTTAT-GAT---G-AG-ATTTTAAAAA--CAAGCCCTTTTTTTTTTCCATTAGG-TTTTCTT-TTTTTTTTA--T-TTCCTTT-TTGT--------------TT-TTATTTTTTA-TTTTTTTTGGGGGGGGGCAG-G-GAAGA--A-TG-A-TGAGAAATG-CC-TGAGC-CCGAA----GGCATG---TATTC-AAAAAAGTTTTC--GTGAAatgaagctagcaagtggcatatatattatgcaacaaaatacaaagttaaacgtgatttctgctggggtttttccctctaaaagtttgaaatatgccacatgtagcttataaacactgactatatatcaaatggcattgaaaggttttaaagtggcacttgcatgccatagatgtttggacataaatctttcatattgttttaatgttgaccaaaaaaaaaaccaaaaaaaacccccacaatacttacttgtatatagatgaacgttcacaagtgttatgatgagattttaaaaacaagcccttttttttttccattaggttttcttttttttttatttcctttttgtttttattttttattttttttgggggggggcagggaagaatgatgagaaatgcctgagcccgaaggcatgtattcaaaaaagttttcgtgaacggac
gi|4 : attttgttcacgaaaaaattgctcttccttacaatcatcggacatgtttatcataaagtcaattcttacagccgatcactctctTTCAAAAAAT---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCTTACAGGCC---------AATCACTCTC-----------TTGC-ATA----AGAA------TAATTTC--AAGTACG-ATTTATCAT-T---T-AATGC--AA--ATCATC-GTCT-GTAGA--A-CGA---TGTCAGTTTT-----------------------TCCCT-A------GT-----T--GCAATTTATGTCCAGTT-C-----AATATAATTTTAGAGTACCGTAGATGCTATCTTCGA-T-TGATcggac
gi|4 : TGCATAAGAATAATT--TCAAGT-----A-CGAT-TTATCA--TTTAA-TGCA--A--ATCA----TCGTCTGTAGAACGATGT-----C--A--GTTTTTCCCTAGTTGCA----A-------TTTAT-GT-CC--AG--------TTCAA-TATAATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAA-CTAGTAA-GTG--GCAT-TA------TA-TTATGCAAC-AAA-TACCAAAGT----AA--CT-TGATTT-TGCTGG---GGGT---TTT--CCCTCTAAAA-G----TTTGG-CT-TTGGA-ATGCCA-C--ATGTAGCTT-AT--AAGAA-CACC--G-AC--AATAT--C-AAAATGG--C-ATTG-AA--TTTT--AAAAAT-GC-ACTTG--C-A-G-CATAAGATTTT---GGGAC--TAAAAC-TT-CAT-ATGTTAATT-AA-GTAAACA-AAAAAATTTAAA--AAAAAC----CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GGGTTAT-GAT---A-AG-ATTTA-AAAA--CAA-----------GCTCTA----G-T----CT-TTATCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TAT-----------GGGCAT-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTAAAGACacgaactagtaagtggcattatattatgcaacaaataccaaagtaacttgattttgctgggggttttccctctaaaagtttggctttggaatgccacatgtagcttataagaacaccgacaatatcaaaatggcattgaattttaaaaatgcacttgcagcataagattttgggactaaaacttcatatgttaattaagtaaacaaaaaaatttaaaaaaaacccaccaatacttatttgtatataatgaacgtcacaagggttatgataagatttaaaaacaagctctagtctttatctgtattttattttcgggcatgttaatttttgtatgggcatggaaaattgatggaaatgcctgcccgaagggcatgtattcaaaaaaagttttcgtaaagac
gi|5 : ttcaaaaaatttgcttttccttacaatcatcggacatgtttatcataaagtcaattcttacaggccaatcactctctAAAA---TTGCTTT------TCCTT-ACA------------ATCATT-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACA-GCC---------GATCATTCCC-----------TTGC-GTA----AGAA------TAATTTT--AAGTATG-ACTTATCAT-T---T-AATCTGTAA--A---------------------GAT-T--TCC--CCTAGTTGCA-AG--ATTG----T-GTCC----------------------AGTTCATAT--------A----GATATAATTTTAGAGTACCGTAGATGCTATCTTTGATT-TGAAGCTAGTAAGTGGCATATATATTAT
gi|5 : TTC--A--TACA-GCCGATCAT-TCCCT---TGCGTAAGAATAATT-TTAA-GT-----A-TGAC-TTATCA--TTTAA-TCTGTAA--AG-A----TTTCCCCTA-------GT-----TGCA-AGATTGTGTCCAGTT-CA-------------------TA---TAGATA-------------TAATTTTAG--AGTACCGTAGATGCTATCTTTGATT-----T-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTT-TGCGGG---GGGT---TTT--CCCT---------------------------ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--G-AC--TATAT--TTAAAATG---C-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CAAAAGATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AGA--------CAAA-CCAC--CAATACTTATTTATATATA-A-TGAACA-TCACAA---GTGTTATTGAT---A-AG-ATTT--AAAAAACAA-----------TCTCTA----G-T----CT-TTTTCTGTA--T-TTTATTT-TTGGG-----------CATG-CTAA-TTTTG-TTT-----------GGGCAG-G-GAAAAACT-TG---TG-GAAATG-CC-T--GT-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACTgcaacaaaatacaaagttaaacgtgattttgcggggggttttccctatgccacatgcagcttataaacaccgactatatttaaaatgcattggaattttaaagtgcacttgcagcaaaagattttgggactaaaacttcatttgttaattaagtaaacaaaaaaaagacaaaccaccaatacttatttatatataatgaacatcacaagtgttattgataagatttaaaaaacaatctctagtctttttctgtattttatttttgggcatgctaattttgtttgggcagggaaaaacttgtggaaatgcctgtccgaagggcatgtattcaaaaaaagttttcgtgaagact
gi|6 : aaaattgcttttccttacaatcattggacatgtttatcataaagtcaaTCTTTGATTAGATACCGAAGCTAGTAAAGTG--GC-TAAC------TA-T-ATGCAACGAAAATAC-AAAGT--TTAA--CGGTGATTT-TTCTGG---GGTT---TT---CCCTCTAAAAAG----TTTGG-CT-TTGAA-ATGCCATC--ATGACCCTT-AT--AA--A-CACC--GGAC--TATAT--C-AAAA-ATGGCAATAGGAA--TATT--AAAT-T-GC-ACTTG--CAA-G-CATA-TA----------AC--TCAA---TT---T-TTACTAA---GA-GAAAACA-AAACAA--AAAG--AAAGACAAACCCAC--CAATACTTATTTGTATATA-A-TGCA-G-TCATAA---GTGCT-T-TAT---A-AG-ATT----AAA--CAA-----------TCTCCA----GAT----CTAATTTCT-TA--TATTTATTTATCGGC-----------AATGATTAA--GTTG--TC-----------GGGCAG-GCGGAAA--TATGAA-TA-GATGCG-CCTT--GCACCGAA-----GCATA---TA-TCAAAAAAAGTTTTC---TGAAGA
gi|7 : ---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTC--AT-C-ATATTAAA---GTCAATTCATACA-GCC---------GATCATTCTC-----------TTGC-ATA----AGAT------TAATTTC--AAGTATG-ACTTATCAT-T---T-AACGCATAA--ATCATT-GTCT-GTAAAGAA-CGACGTTA--G--TTTTA-T------------------GTCC----------------------AGTTCAT------------------ATAATTTTAGAGTACCG-------CATCTTTGA-T-TGATact
gi|7 : -TAATTTTAG--AGTACCGCA-------TCTTTGATT-GATAC-AAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATGC-AATGTTATAAA--CG-TAATTT-TGCTGG---GG-----GTTTTCTCTCTAAAA-GTTAATTTGG-CT-TTGAA-ATGTCA-C--ATGCAGCTT-AC--AA--A-CATC--G-AC--TATAT--C-AAAAT--GGC-ATTAAAA--TTTT--GAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAacaaagctagtaagtggcatatatattatgcaacaaaatgcaatgttataaacgtaattttgctgggggttttctctctaaaagttaatttggctttgaaatgtcacatgcagcttacaaacatcgactatatcaaaatggcattaaaattttgaagtgcacttgcagcatagattttggga
gi|8 : ttgcttttccttacaatcatcggacatgttcatcatattaaagtcaattcatacagccgatcattctcttgcataagattaatttcaagtatgacttatcatttaacgcataaatcattgtctgtaaagaacgacgttagttttatgtccagttcataTA----AGAA------TAATTTC--AAGTACG-ACTTATCAT-T---TCAATGCATAA--GTCG---ATCA-----------GAG-TT------TTT-------------CCC----TAGT-CGCAA-------------------GTTTATGTCCAGTT-C------ATATAATTTTAGAGTACCGTAGATGCTATCTTCGA-T-TGAT
gi|8 : ATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-Tacgaagctagtaagtggcatatatatactttgaaatgccacatggagctttattaaaacaccgaatatatatcaaaatggcattgaaattttaatgtgcacttgcagcatagaatttgggactcaaacttcatttttaattaagtaaacaataaaaaaaaaaacaccaatacttgtatataatgaacgtcacaggtgttatgata
gi|8 : taagaataatttcaagtacgacttatcatttcaatgcataagtcgatcagagtttttccctagtcgcaagtttatgtccagttcatata-CT-TTGAA-ATGCCA-C--ATGGAGCTTTATTAAA--A-CACC--G-AA--TATATATC-AAAATGG--C-ATTGAAA--TTTT--AATG-T-GC-ACTTG--C-A-G-CATA-GAATTT---GGGAC--TCAAAC-TT-CAT-TT-TTAATT-AA-GTAAACA-ATAAAA--AAAA--AAA--------CAC--CAATAC----TTGTATATA-A-TGAACG-TCACAG---GTGTTAT-GAT---A-actttgaaatgccacatggagctttattaaaacaccgaatatatatcaaaatggcattgaaattttaatgtgcacttgcagcatagaatttgggactcaaacttcatttttaattaagtaaacaataaaaaaaaaaacaccaatacttgtatataatgaacgtcacaggtgttatgata
gi|9 : taagaataatttcaagtacgacttatcatttcaatgcataagtcgatcagagtttttccctagtcgcaagtttatgtccagttcatataattttagagtaccgtagatgctatcttcgattgatacgaagctagtaagtggcatatatataAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACG-GCC---------GATCATTCTC-----------TTGC-GTA----AGAA------TAATTTC--AAGTACG-ACATATCAT-T---T-AA
gi|9 : TTC--A--TACG-GCCGATCAT-TC--T-CTTGCGTAAGAATAATT--TCAAGT-----A-CGAC-ATATCA--TTTAA--GAACGAT-GTCAGAGTTTTTCCG-GA------GT-----TGTA-AGTCTGTGTATA----TA----AATATAATTTTAGAGTACTGCAGATGCTCTCTTTGA-T-TGATgaacgatgtcagagtttttccggagttgtaagtctgtgtatataaatataattttagagtactgcagatgctctctttgattgatacgaagctagtaaatggcatatacacaaagttaaacatgattttgtggggggttttccctctaaaagttcggcttataaacaccgactatatcaaaatggcattggaattttagggatac
gi|9 : aaaattgcttttccttacaatcatcggacatgtttatcataaagtcaa-TAATTTTAG--AGTACTGCAGATGCTCTCTTTGATT-GATAC-GAAGCTAGTAA-ATG--GCATAT-----------------------ACAC-AAAGT--TAAA--CA-TGATTT-TGTGGG---GG-----GTTTTCCCTCTAAAA-G----TT--------------------------CGGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAAT--GGC-ATTGGAA--TTTT--Aacgaagctagtaaatggcatatacacaaagttaaacatgattttgtggggggttttccctctaaaagttcggcttataaacaccgactatatcaaaatggcattggaattttagggatac
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111111111 1111111111111111111 1111111 22222222222 11 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333 333333333 111111 111111 33333 11 2222 11 1111111 111 3333333333333333333333333333 22222222222 11111111111
lowQualScore : 000 999999 3 777777777777 3 3 44 3 3 555 555 1 3 3 7777777777777777777 6666666 11111111111 44 3 4 777 4 22 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 000000000 4 2 44 111111 33 3 6 66 3 1 4 4 4 55 111111 4 4 4 66 66 4 4 777 00000 3 4 9999 0 88888 4 4 66 0 4 66 66 4 00 66 66 4 0000 4 2 66 66 4 8 4 66 4 8 4 8 777 11 0 5 5 5 5 5 0 5 66 66 3333333 77 5 5 5 888 5 888 5 5 555 66 4444444444444444444444444444 4 2 55 4 4 44444444444 3 3 77777777777 3 3 55 3 555 3 3 3 55 3 666 666 55
lowQualScore : ... ...... . ............ . . .. . . ... ... . . . ................... ....... ........... .. . . ... . .. . ..................................................................................... . ......... . . .. ...... .. . . .. . . . . . .. ...... . . . .. .. . . ... ..... . . .... . ..... . . .. . . .. .. . .. .. .. . .... . . .. .. . . . .. . . . . ... .. . . . . . . . . .. .. ....... .. . . . ... . ... . . ... .. ............................ . . .. . . ........... . . ........... . . .. . ... . . . .. . ... ... ..
lowQualScore : 444 666666 3 111111111111 3 3 66 3 3 888 888 0 6 6 5555555555555555555 8888888 44444444444 66 3 0 000 0 77 4 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 111111111 3 1 88 888888 22 6 2 11 4 7 0 0 0 55 555555 0 4 4 11 11 4 4 888 22222 6 4 4444 1 77777 4 4 11 9 4 11 11 4 66 11 11 4 1111 4 7 11 11 4 9 4 11 4 9 4 9 888 99 4 0 0 0 0 0 4 0 99 99 5555555 99 7 7 0 888 0 888 0 7 000 99 1111111111111111111111111111 4 5 55 0 0 55555555555 6 6 33333333333 6 6 00 6 111 6 6 6 00 6 444 444 00
consensus : GTTCACGAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCNTACA-GCC-GATCA------CT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCATT--TCN-GT-----A-CGAC-TTATCA--TTT-AATGCATAA--ATC-A--TCG-------TCCCTAA------GT-----TG-A-AGTTTATGTCCAGTT-CA----AATATAATTTTAGAGTACCGTAGATGCTATCTTCGA-T-TGATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGT-AAGTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--C-GTGATTT-TGCTGG---GG-----TTTTTCCCTCT-AAAAG----TTTGG-CT-TTGAA-ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--GAC--TATAT--C-AAAATGGGGC-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AAAA--AAAAACAAA-CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GTGTTAT-GAT---A-AG-ATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACT
Reference ( family-2489 ) : GTTCACGAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCNTACA-GCC-GATCA------CT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCATT--TCN-GT-----A-CGAC-TTATCA--TTT-AATGCATAA--ATC-A--TCG-------TCCGTAA------GT-----T--A-AGTTTATGTCCAGTT-CA----AATATAATTTTAGAGTACCGTAGATGCTATCTTCGA-T-TGATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGT-AAGTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--C-GTGATTT-TGCTGG---GGT----TTTTTCCCTCT-AAAAG----TTTGG-CT-TTGAA-ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--GAC--TATAT--C-AAAATGGGGC-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AAAA--AAAAACAAA-CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GTGTTAT-GAT---A-AG-ATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACT
gi|1 : GTTCACGAAAA---TTTCTTT------TCCTT-ACA------------ATCATC-AGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACA-GCC-GATCA------CT-----------CAC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACATATCAT-T---T-AATGCATAA--ATCATTA-TCT-GT-----AGCGTT-NTATCA--TTT-AATGCATAA--ATC-A--TCA-------TCTGTAAC-----GT-----T--A-AGTTTGTGTCCAGTT-CATATTGATATAATTTTAGAGTACTGTAAATGCTATCTTTGA-T-TGGNTTTAG--AGTACTGTAGATGCTATCTTTGATT-GGTAC-GAAGTTAGT-AAGTG--GCATATA------TA-TTATGCAAC-AAAATAC-TAAGT--TAAA--C-GTGATTT-TGCGGG---GTT----TTTTTTCCTTT-AAAAG----TTTGG-CT-TTGAA-ATGCCA-C--ATTCAGCTT-AT--AA--A-CACC--GAC--TATAT--C-AAAATGGGGC-ATTGGAA--TGTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAGAAA--GAAA--AAAGACAAA-CCAT--CAATACTTATTTAT-CATA-A-TAAACG-TCACAA---GTGTTGT-GAT---A-AGAATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTGTTT-TTGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TT-T-TG-GAAATG-CT-T--GC-CCGAA---GGGCATG---TATTCAAAACAAGTTTTC--GTGAAGACT
gi|10 : CACGAAA-----TGCTTT------TCCTT-ACA------------GTCAGT-GGAA-A-GTT---AT-C-A-A---AA---GTCAATTCATAC--GCC-GATCA------TT-----------CTCGTACAGATTGC-----------TAAGAATAATTTT--AAGTTCG-ACTTCTAGTAT---T-AATGCA-AA--AT
gi|11 : AACA-TTACAATATGTGCTAT-CATTAAACAA-ACTT--AAAA--TGT-----------T-----------T----CT-TTTTC---A--T-CTT-TTT-TGGGGGAAGAGGGGGGCATG-TTGATTTTTT-ATC-----------GGGCAG-G-TGAAA--T-TG-A-TA-AAAAGA-CC-T--GC-CCGAA---GGGCATG---TGTTCAAAAAAAGTTCTC--GTGAAGACtgaacaatgtcagagtttttccctgttgcaagttgtgtccacttcatatctgaa
gi|12 : CAGGAAAG---TTGCTTT-------CCTT-ACATGTATATGTATAATCATT-AGAC-GTGTTT--CTTC-ATA---CATCTGACCATTCTTATG-GC------A------CT------------TC-------CTGT----------GCAAGAATACTTAT--AA-TA---ACTTAACAA-T---T-AATGCATAA--Acg
gi|13 : atgtactaattttatg--CAA-----------ATTTCA----A-C----CT-TTTTCTGTATCT-TTTATAT---AGG-----------CATG-TTAATTTTTG-TCC-----------AGGCAG-G-TGAAA--T-TG-A-TA-GAAACA-CC-T--GA-TCGAA---GGGTATA---TATTTAATTAATGTTTTT--GTGAAGACT
gi|14 : CA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCAAT-----------TATG-TTAATTTTTG-TTC-----------GGGCAG-A-GAAAA--T-TG-A-TG-GAAATG-TC-T--GC-CCGAA---GGGCATG---TATTCAAAAAATGTTTTT--GTGAAGACT
gi|15 : AAAA---TTGCTTT-------CCTT-TCA------------ATCATC-AGAC-GTG--T--AT-T-ATA---A-----TTAATTCTTACA-ACT-GATCA------TTCTCATGGTCACCTC-------TTGCATATTTAAGAATAAGAATAATCAT--AAGTACA-ACTg
gi|16 : GTGCACGAATA---TTGCTTT------TCCTC-ACA------------ATCATC-GGAC-ATGTTC--AT-T-ATA---AA---GTCAATTCGTACA-GCC-AATGA------TT-----------TTC-------TAGC----------GTAAGAATAAATTC--AAGTACA-AC
gi|17 : tGTA--T-TTCATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCGG-G-GAAAA--T-TG-A-CG-AAAATG-CC-T--GC-CCAAA---GGGCAGG---TGTTCATAAAAAGTTTTC--GTGAAGACT
gi|18 : TT-GCTAC-AAAGCTAGT-AAGTG--GCATATACATGTATA-TTATGCAAC-AAAATGC-AAAGT--TAAA--C-ATGATTT-TGCTGG---GG-----TTTTTCTCTCT-AAAAG----TT
gi|19 : G-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-AG-GAAATG-CC-T--GC-CCAAC---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACTaa
gi|2 : GTTCACAAAAAAAATTGTTTT------TCCTT-ACA------------ATCATCCAGACCATGTTTTGAT-CCATA---AA---GTCA--TCTTACA-GCCCGATAAACTAATCT-----------CTCAT-----TTGCC---------ATAAGAATAATTTTTAAAGTGTGGACTTATCAT-T---TTAATGCATAA--ATCATTCATCT-G--------CGA---TA--A--T---AAAGAACGATGGTC-AGTTTT-------TCCCTAA------GTGTGATC--ATAGTTTATGTCCAGTT-AC----ACTATAATTT----------TAGG----ATCTC--A-T-TCAGTTC-----GT---GTGGACGCT---------T-GATAT-G----TAG--AAGTCCTGTATAGA------TAATTATGCAAC-AAAATAC-AAAGT--TAAAAAC-GTGATTT-TGACGGATTGGTGGAGTTTTCCCATCT-AAAAG----TTTGGGCTATTGAA--TGCCA-CCAATGTAGCTT-AT--AA--AACACCAGGAC--AATAT--C-AAAATGGGCC-ATTTAAA--TTTTTAAAAG-TCGCGACTTGGCC-ATG-C-TA-GATCTTTTGGGGACCTTAAAAC-TTTCAT-ATGTTAATT-AA-GT---CA-AACAAA--AAAA--AAAAAC----CCAC--CCATACTTATTTGTATATA-ATTGAACG-TCA-AA---GTGTGAT-GAA---G-AG-ATTT-----------------------------------------------------T-TTTA-TT-TCGGGTC---------CATG-TTAATTTTTGATTC------------TGCAGTG-GAAA-----TG-ACTG-GAAATGACC-T--GC-CCAAAGACGGGCATGTGATATT--AAAAAAGTTTTCCAATGAAGAg
gi|20 : taaattttAG-T-GC-ACTTG--C-A-G-CAAA-GATTTT---GGGAC--TAGAAC-TT-CAT-TTGTTAATTGAA-GTAAACATTACTAA--ACAA--AACAACAA
gi|21 : GTGCAAGAAAA---TCATTTTCCAGAATCCTTTATC------------GTCATC-AGAC-ATGTTC--AT-T-ATA---AA---GTc
gi|3 : taattttGTTCACGAAAAAA-TTGCTCT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCTTACA-GCC-GATCA------CT-----------CTC-------TTGC----------ATAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCAT----------------CG---------------AATGCAT-G--TTC-AGTTTT-------TCCCT-A------GT-----TGCA-AGTTTATGTCCAGTT-C------ATATAATTTTAGAGTACCGTAGATGCTGTCTTCGA-T-TGAT
gi|3 : attttTGCATAAGAATAATT--TCAAGT-----A-CGAC-TTATCA--TTT-AATGCATAA--ATC-A--TCG-------AATGCAT------GT-----T--C-AGTTTTTCCCTAGTTGCA----AGT------TTAT-GT-CC--AG--------TTC-A-TATAATTTTAG--AGTACCGTAGATGCTGTCTTCGATT-GATAT-GAAGCTAGC-AAGTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--C-GTGATTTCTGCTGG---GG-----TTTTTCCCTCT-AAAAG----TTTG-------AAATATGCCA-C--ATGTAGCTT-AT--AA--A-CACT--GACTATATAT--C--AAAT--GGC-ATTGAAAGGTTTT--AAAG-TGGC-ACTTG--C-ATGCCATA-GATGTT---TGGACA-TAAATCTTT-CATATTGTT--TT-AATGTTGACC-AAAAAA--AAAACCAAAAA-AAA-CCCCCACAATACTTACTTGTATATAGA-TGAACGTTCACAA---GTGTTAT-GAT---G-AG-ATTTTAAAAA--CAAGCCCTTTTTTTTTTCCATTAGG-TTTTCTT-TTTTTTTTA--T-TTCCTTT-TTGT--------------TT-TTATTTTTTA-TTTTTTTTGGGGGGGGGCAG-G-GAAGA--A-TG-A-TGAGAAATG-CC-TGAGC-CCGAA----GGCATG---TATTC-AAAAAAGTTTTC--GTGAAatgaagctagcaagtggcatatatattatgcaacaaaatacaaagttaaacgtgatttctgctggggtttttccctctaaaagtttgaaatatgccacatgtagcttataaacactgactatatatcaaatggcattgaaaggttttaaagtggcacttgcatgccatagatgtttggacataaatctttcatattgttttaatgttgaccaaaaaaaaaaccaaaaaaaacccccacaatacttacttgtatatagatgaacgttcacaagtgttatgatgagattttaaaaacaagcccttttttttttccattaggttttcttttttttttatttcctttttgtttttattttttattttttttgggggggggcagggaagaatgatgagaaatgcctgagcccgaaggcatgtattcaaaaaagttttcgtgaacggac
gi|4 : attttgttcacgaaaaaattgctcttccttacaatcatcggacatgtttatcataaagtcaattcttacagccgatcactctctTTCAAAAAAT---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCTTACAGGCC-AATCA------CT-----------CTC-------TTGC----------ATAAGAATAATTTC--AAGTACG-ATTTATCAT-T---T-AATGC--AA--ATCATCG-TCT-GTAGA--A-CGA---TGTCAGTTTT-----------------------------TCCCT-A------GT-----T--GCAATTTATGTCCAGTT-C-----AATATAATTTTAGAGTACCGTAGATGCTATCTTCGA-T-TGATcggac
gi|4 : TGCATAAGAATAATT--TCAAGT-----A-CGAT-TTATCA--TTT-AATGCA--A--ATC-A--TCG-------TCTGTAGAACGATGT-----C--A--GTTTTTCCCTAGTTGCA----A-------TTTAT-GT-CC--AG--------TTCAA-TATAATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAA-CTAGT-AAGTG--GCAT-TA------TA-TTATGCAAC-AAA-TACCAAAGT----AA--C-TTGATTT-TGCTGG---GGG----TTTT-CCCTCT-AAAAG----TTTGG-CT-TTGGA-ATGCCA-C--ATGTAGCTT-AT--AAGAA-CACC--GAC--AATAT--C-AAAATGG--C-ATTG-AA--TTTT--AAAAAT-GC-ACTTG--C-A-G-CATAAGATTTT---GGGAC--TAAAAC-TT-CAT-ATGTTAATT-AA-GTAAACA-AAAAAATTTAAA--AAAAAC----CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GGGTTAT-GAT---A-AG-ATTTA-AAAA--CAA-----------GCTCTA----G-T----CT-TTATCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TAT-----------GGGCAT-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTAAAGACacgaactagtaagtggcattatattatgcaacaaataccaaagtaacttgattttgctgggggttttccctctaaaagtttggctttggaatgccacatgtagcttataagaacaccgacaatatcaaaatggcattgaattttaaaaatgcacttgcagcataagattttgggactaaaacttcatatgttaattaagtaaacaaaaaaatttaaaaaaaacccaccaatacttatttgtatataatgaacgtcacaagggttatgataagatttaaaaacaagctctagtctttatctgtattttattttcgggcatgttaatttttgtatgggcatggaaaattgatggaaatgcctgcccgaagggcatgtattcaaaaaaagttttcgtaaagac
gi|5 : ttcaaaaaatttgcttttccttacaatcatcggacatgtttatcataaagtcaattcttacaggccaatcactctctAAAA---TTGCTTT------TCCTT-ACA------------ATCATT-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACA-GCC-GATCA------TT-----------CCC-------TTGC----------GTAAGAATAATTTT--AAGTATG-ACTTATCAT-T---T-AATCTGTAA--A-GATT--TCC-------------C-CTA--G--T-----TGCA-AG--ATT-G--T-G-------TCC----------------------AGTTCATAT--------A----GATATAATTTTAGAGTACCGTAGATGCTATCTTTGATT-TGAAGCTAGTAAGTGGCATATATATTAT
gi|5 : TTC--A--TACA-GCCGATCAT-TCCCT---TGCGTAAGAATAATT--TTAAGT-----A-TGAC-TTATCA--TTT-AATCTGTAA--AG--A--TTT-------CCCCTA-------GT-----TGCA-AGATTGTGTCCAGTT-CA-------------------TA---TAGATA-------------TAATTTTAG--AGTACCGTAGATGCTATCTTTGATT-----T-GAAGCTAGT-AAGTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--C-GTGATTT-TGCGGG---GGG----TTTT-CCCT---------------------------ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--GAC--TATAT--TTAAAATG---C-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CAAAAGATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AGA--------CAAA-CCAC--CAATACTTATTTATATATA-A-TGAACA-TCACAA---GTGTTATTGAT---A-AG-ATTT--AAAAAACAA-----------TCTCTA----G-T----CT-TTTTCTGTA--T-TTTATTT-TTGGG-----------CATG-CTAA-TTTTG-TTT-----------GGGCAG-G-GAAAAACT-TG---TG-GAAATG-CC-T--GT-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACTgcaacaaaatacaaagttaaacgtgattttgcggggggttttccctatgccacatgcagcttataaacaccgactatatttaaaatgcattggaattttaaagtgcacttgcagcaaaagattttgggactaaaacttcatttgttaattaagtaaacaaaaaaaagacaaaccaccaatacttatttatatataatgaacatcacaagtgttattgataagatttaaaaaacaatctctagtctttttctgtattttatttttgggcatgctaattttgtttgggcagggaaaaacttgtggaaatgcctgtccgaagggcatgtattcaaaaaaagttttcgtgaagact
gi|6 : aaaattgcttttccttacaatcattggacatgtttatcataaagtcaaTCTTTGATTAGATACCGAAGCTAGTAAAGTG--GC-TAAC------TA--TATGCAACGAAAATAC-AAAGT--TTAA--CGGTGATTT-TTCTGG---GG------TTTTCCCTCTAAAAAG----TTTGG-CT-TTGAA-ATGCCATC--ATGACCCTT-AT--AA--A-CACCG-GAC--TATAT--C-AAAA-ATGGCAATAGGAA--TATT--AAAT-T-GC-ACTTG--CAA-G-CATA-TA----------AC--TCAA---TT---T-TTACTAA---GA-GAAAACA-AAACAA--AAAG--AAAGACAAACCCAC--CAATACTTATTTGTATATA-A-TGCA-G-TCATAA---GTGCT-T-TAT---A-AG-ATT----AAA--CAA-----------TCTCCA----GAT----CTAATTTCT-TA--TATTTATTTATCGGC-----------AATGATTAA--GTTG--TC-----------GGGCAG-GCGGAAA--TATGAA-TA-GATGCG-CCTT--GCACCGAA-----GCATA---TA-TCAAAAAAAGTTTTC---TGAAGA
gi|7 : ---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTC--AT-C-ATATTAAA---GTCAATTCATACA-GCC-GATCA------TT-----------CTC-------TTGC----------ATAAGATTAATTTC--AAGTATG-ACTTATCAT-T---T-AACGCATAA--ATCATTG-TCT-GTAAAGAA-CGACGTTA--G--TTT-TAT-----------------G-------TCC----------------------AGTTCAT------------------ATAATTTTAGAGTACCG-------CATCTTTGA-T-TGATact
gi|7 : -TAATTTTAG--AGTACCGCA-------TCTTTGATT-GATAC-AAAGCTAGT-AAGTG--GCATATA------TA-TTATGCAAC-AAAATGC-AATGTTATAAA--C-GTAATTT-TGCTGG---GG-----GTTTTCTCTCT-AAAAGTTAATTTGG-CT-TTGAA-ATGTCA-C--ATGCAGCTT-AC--AA--A-CATC--GAC--TATAT--C-AAAAT--GGC-ATTAAAA--TTTT--GAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAacaaagctagtaagtggcatatatattatgcaacaaaatgcaatgttataaacgtaattttgctgggggttttctctctaaaagttaatttggctttgaaatgtcacatgcagcttacaaacatcgactatatcaaaatggcattaaaattttgaagtgcacttgcagcatagattttggga
gi|8 : ttgcttttccttacaatcatcggacatgttcatcatattaaagtcaattcatacagccgatcattctcttgcataagattaatttcaagtatgacttatcatttaacgcataaatcattgtctgtaaagaacgacgttagttttatgtccagttcataA--ATAATT--TCAAGT-----A-CGAC-TTATCA--TTTCAATGCATAA--GTCGA--TCAGAGTTTTTCCCTA-------GT-----CGCA-AGTTTATGTCCAGTT-CA------TATAATTTTAGAGTACCGTAGATGCTATCTTCGA-T-TGAT
gi|8 : taagATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGT-AAGTG--GCATATA------TA-Tacgaagctagtaagtggcatatatatactttgaaatgccacatggagctttattaaaacaccgaatatatatcaaaatggcattgaaattttaatgtgcacttgcagcatagaatttgggactcaaacttcatttttaattaagtaaacaataaaaaaaaaaacaccaatacttgtatataatgaacgtcacaggtgttatgata
gi|8 : taagaataatttcaagtacgacttatcatttcaatgcataagtcgatcagagtttttccctagtcgcaagtttatgtccagttcatata-CT-TTGAA-ATGCCA-C--ATGGAGCTTTATTAAA--A-CACC--GAA--TATATATC-AAAATGG--C-ATTGAAA--TTTT--AATG-T-GC-ACTTG--C-A-G-CATA-GAATTT---GGGAC--TCAAAC-TT-CAT-TT-TTAATT-AA-GTAAACA-ATAAAA--AAAA--AAA--------CAC--CAATAC----TTGTATATA-A-TGAACG-TCACAG---GTGTTAT-GAT---A-actttgaaatgccacatggagctttattaaaacaccgaatatatatcaaaatggcattgaaattttaatgtgcacttgcagcatagaatttgggactcaaacttcatttttaattaagtaaacaataaaaaaaaaaacaccaatacttgtatataatgaacgtcacaggtgttatgata
gi|9 : taagaataatttcaagtacgacttatcatttcaatgcataagtcgatcagagtttttccctagtcgcaagtttatgtccagttcatataattttagagtaccgtagatgctatcttcgattgatacgaagctagtaagtggcatatatataAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACG-GCC-GATCA------TT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-AC-------------------ATA----TCATT--TAA-GA-----A-CGA---TGTCA-------------GA--GT-----TTT-------TCCG-GA------GT-----TGTA-AGTCTGTGTATA----TA----AATATAATTTTAGAGTACTGCAGATGCTCTCTTTGA-T-TGAT
gi|9 : -TAATTTTAG--AGTACTGCAGATGCTCTCTTTGATT-GATAC-GAAGCTAGT-AAATG--GCATAT-----------------------ACAC-AAAGT--TAAA--C-ATGATTT-TG-TGG---GGG----GTTTTCCCTCT-AAAAG----TT--------------------------CGGCTT-AT--AA--A-CACC--GAC--TATAT--C-AAAAT--GGC-ATTGGAA--TTTT--Aacgaagctagtaaatggcatatacacaaagttaaacatgattttgtggggggttttccctctaaaagttcggcttataaacaccgactatatcaaaatggcattggaattttagggatac
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111111111 1111111111111111111 1111111 22222222222 11 33333333333333333333333333333333333333333333333333333333333333333333333333333333 333333333 111111 111111 11111111 2222 11 1111111 111 3333333333333333333333333333 22222222222 11111111111
lowQualScore : 000 999999 3 777777777777 3 3 44 3 3 555 555 1 3 3 7777777777777777777 6666666 11111111111 44 3 4 777 4 22 1 66666666666666666666666666666666666666666666666666666666666666666666666666666666 0 444444444 2 2 1 1 000000 2 3 3 77777 66 3 1 4 4 4 55 111111 4 4 4 66 66 4 4 4 66666666 1 66 4 9999 0 88888 4 4 66 0 4 66 66 4 66 4 66 66 4 0000 4 2 66 66 4 8 4 66 4 8 4 8 777 11 0 5 5 5 5 5 0 5 66 66 3333333 77 5 5 5 888 5 888 5 5 555 66 4444444444444444444444444444 4 2 55 4 4 44444444444 3 3 77777777777 3 3 55 3 555 3 3 3 55 3 666 666 55
lowQualScore : ... ...... . ............ . . .. . . ... ... . . . ................... ....... ........... .. . . ... . .. . ................................................................................ . ......... . . . . ...... . . . ..... .. . . . . . .. ...... . . . .. .. . . . ........ . .. . .... . ..... . . .. . . .. .. . .. . .. .. . .... . . .. .. . . . .. . . . . ... .. . . . . . . . . .. .. ....... .. . . . ... . ... . . ... .. ............................ . . .. . . ........... . . ........... . . .. . ... . . . .. . ... ... ..
lowQualScore : 444 666666 3 111111111111 3 3 66 3 3 888 888 0 6 6 5555555555555555555 8888888 44444444444 66 3 0 000 0 77 4 55555555555555555555555555555555555555555555555555555555555555555555555555555555 5 000000000 0 0 4 4 555555 6 6 1 77777 11 4 7 0 0 0 55 555555 0 4 4 11 11 4 4 4 22222222 7 11 4 4444 1 77777 4 4 11 9 4 11 11 4 11 4 11 11 4 1111 4 7 11 11 4 9 4 11 4 9 4 9 888 99 4 0 0 0 0 0 4 0 99 99 5555555 99 7 7 0 888 0 888 0 7 000 99 1111111111111111111111111111 4 5 55 0 0 55555555555 6 6 33333333333 6 6 00 6 111 6 6 6 00 6 444 444 00
consensus : GTTCACGAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCNTACA-GCC-GATCA------CT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCATT--TCN-GT-----A-CGAC-TTATCA---TTT-AATGCATAA--ATC-A--TCG-------TCCCTAA-GT-TG-A----AGTTTATGTCCAGTT-CA----AATATAATTTTAGAGTACCGTAGATGC-----TATCTTCGA-T-T-----GATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTT-TG-C-------TGGGGTTTTTC--CCTCTAAAA-G----TTTGG-CT-TTGAA-ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAATGGGGC-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AAAA--AAAAACAAA-CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GTGTTAT-GAT---A-AG-ATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACT
Reference ( family-2489 ) : GTTCACGAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCNTACA-GCC-GATCA------CT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCATT--TCN-GT-----A-CGAC-TTATCA---TTT-AATGCATAA--ATC-A--TCG-------TCCCTAA-GT-TG-A----AGTTTATGTCCAGTT-CA----AATATAATTTTAGAGTACCGTAGATGC-----TATCTTCGA-T-T-----GATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTT-TG-C-------TGGGGTTTTTC--CCTCTAAAA-G----TTTGG-CT-TTGAA-ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAATGGGGC-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AAAA--AAAAACAAA-CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GTGTTAT-GAT---A-AG-ATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACT
gi|1 : GTTCACGAAAA---TTTCTTT------TCCTT-ACA------------ATCATC-AGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACA-GCC-GATCA------CT-----------CAC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACATATCAT-T---T-AATGCATAA--ATCATTA-TCT-GT-----AGCGTT-NTATCA---TTT-AATGCATAA--ATC-A--TCA-------TCTGTAACGT-T--A----AGTTTGTGTCCAGTT-CATATTGATATAATTTTAGAGTACTGTAAATGC-----TATCTTTGA-T-T-----GGNTTTAG--AGTACTGTAGATGCTATCTTTGATT-GGTAC-GAAGTTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-TAAGT--TAAA--CG-TGATTT-TG-C--------GGGGTTTTTTTTCCTTTAAAA-G----TTTGG-CT-TTGAA-ATGCCA-C--ATTCAGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAATGGGGC-ATTGGAA--TGTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAGAAA--GAAA--AAAGACAAA-CCAT--CAATACTTATTTAT-CATA-A-TAAACG-TCACAA---GTGTTGT-GAT---A-AGAATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTGTTT-TTGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TT-T-TG-GAAATG-CT-T--GC-CCGAA---GGGCATG---TATTCAAAACAAGTTTTC--GTGAAGACT
gi|10 : CACGAAA-----TGCTTT------TCCTT-ACA------------GTCAGT-GGAA-A-GTT---AT-C-A-A---AA---GTCAATTCATAC--GCC-GATCA------TT-----------CTCGTACAGATTGC-----------TAAGAATAATTTT--AAGTTCG-ACTTCTAGTAT---T-AATGCA-AA--AT
gi|11 : AACA-TTACAATATGTGCTAT-CATTAAACAA-ACTT--AAAA--TGT-----------T-----------T----CT-TTTTC---A--T-CTT-TTT-TGGGGGAAGAGGGGGGCATG-TTGATTTTTT-ATC-----------GGGCAG-G-TGAAA--T-TG-A-TA-AAAAGA-CC-T--GC-CCGAA---GGGCATG---TGTTCAAAAAAAGTTCTC--GTGAAGACtgaacaatgtcagagtttttccctgttgcaagttgtgtccacttcatatctgaa
gi|12 : CAGGAAAG---TTGCTTT-------CCTT-ACATGTATATGTATAATCATT-AGAC-GTGTTT--CTTC-ATA---CATCTGACCATTCTTATG-GC------A------CT------------TC-------CTGT----------GCAAGAATACTTAT--AA-TA---ACTTAACAA-T---T-AATGCATAA--Acg
gi|13 : atgtactaattttatg--CAA-----------ATTTCA----A-C----CT-TTTTCTGTATCT-TTTATAT---AGG-----------CATG-TTAATTTTTG-TCC-----------AGGCAG-G-TGAAA--T-TG-A-TA-GAAACA-CC-T--GA-TCGAA---GGGTATA---TATTTAATTAATGTTTTT--GTGAAGACT
gi|14 : CA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCAAT-----------TATG-TTAATTTTTG-TTC-----------GGGCAG-A-GAAAA--T-TG-A-TG-GAAATG-TC-T--GC-CCGAA---GGGCATG---TATTCAAAAAATGTTTTT--GTGAAGACT
gi|15 : AAAA---TTGCTTT-------CCTT-TCA------------ATCATC-AGAC-GTG--T--AT-T-ATA---A-----TTAATTCTTACA-ACT-GATCA------TTCTCATGGTCACCTC-------TTGCATATTTAAGAATAAGAATAATCAT--AAGTACA-ACTg
gi|16 : GTGCACGAATA---TTGCTTT------TCCTC-ACA------------ATCATC-GGAC-ATGTTC--AT-T-ATA---AA---GTCAATTCGTACA-GCC-AATGA------TT-----------TTC-------TAGC----------GTAAGAATAAATTC--AAGTACA-AC
gi|17 : tGTA--T-TTCATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCGG-G-GAAAA--T-TG-A-CG-AAAATG-CC-T--GC-CCAAA---GGGCAGG---TGTTCATAAAAAGTTTTC--GTGAAGACT
gi|18 : TT-GCTAC-AAAGCTAGTAA-GTG--GCATATACATGTATA-TTATGCAAC-AAAATGC-AAAGT--TAAA--CA-TGATTT-TG-C-------TGGGGTTTTTC--TCTCTAAAA-G----TT
gi|19 : G-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-AG-GAAATG-CC-T--GC-CCAAC---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACTaa
gi|2 : GTTCACAAAAAAAATTGTTTT------TCCTT-ACA------------ATCATCCAGACCATGTTTTGAT-CCATA---AA---GTCA--TCTTACA-GCCCGATAAACTAATCT-----------CTCAT-----TTGCC---------ATAAGAATAATTTTTAAAGTGTGGACTTATCAT-T---TTAATGCATAA--ATCATTCATCT-G--------CGA---TA--A---T---AAAGAACGATGGTC-AGTTTT-------TCCCTAA-GTGTG-ATCATAGTTTATGTCCAGTT-AC----ACTATAATTT----------TAGG---------ATCTC--A-T-T-----CAGTTC-----GT---GTGGACGCT---------T-GATAT-G----TAG-AA-GTCCTGTATAGA------TAATTATGCAAC-AAAATAC-AAAGT--TAAAAACG-TGATTT-TGACGGATTGGTGGAGTTTTCC--CATCTAAAA-G----TTTGGGCTATTGAA--TGCCA-CCAATGTAGCTT-AT--AA--AACACCAGG-AC--AATAT--C-AAAATGGGCC-ATTTAAA--TTTTTAAAAG-TCGCGACTTGGCC-ATG-C-TA-GATCTTTTGGGGACCTTAAAAC-TTTCAT-ATGTTAATT-AA-GT---CA-AACAAA--AAAA--AAAAAC----CCAC--CCATACTTATTTGTATATA-ATTGAACG-TCA-AA---GTGTGAT-GAA---G-AG-ATTT-----------------------------------------------------T-TTTA-TT-TCGGGTC---------CATG-TTAATTTTTGATTC------------TGCAGTG-GAAA-----TG-ACTG-GAAATGACC-T--GC-CCAAAGACGGGCATGTGATATT--AAAAAAGTTTTCCAATGAAGAg
gi|20 : taaattttAG-T-GC-ACTTG--C-A-G-CAAA-GATTTT---GGGAC--TAGAAC-TT-CAT-TTGTTAATTGAA-GTAAACATTACTAA--ACAA--AACAACAA
gi|21 : GTGCAAGAAAA---TCATTTTCCAGAATCCTTTATC------------GTCATC-AGAC-ATGTTC--AT-T-ATA---AA---GTc
gi|3 : taattttGTTCACGAAAAAA-TTGCTCT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCTTACA-GCC-GATCA------CT-----------CTC-------TTGC----------ATAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCAT----------------CG----------------AATGCAT-G--TTC-AGTTTT-------TCCCT-A-GT-TGCA----AGTTTATGTCCAGTT-C------ATATAATTTTAGAGTACCGTAGATGC-----TGTCTTCGA-T-T-----GAT
gi|3 : attttTGCATAAGAATAATT--TCAAGT-----A-CGAC-TTATCA---TTT-AATGCATAA--ATC-A--TCG--------------------------AATGCATGTTCAGTT---------------TTT------CCCTAGTTGCAAGTTTATGTCCAG-T-TCATATAATTTTAG--AGTACCGTAGATGCTGTCTTCGATT-GATAT-GAAGCTAGCAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTTCTG-C-------TGGGGTTTTTC--CCTCTAAAA-G----TTTG-------AAATATGCCA-C--ATGTAGCTT-AT--AA--A-CACT--G-ACTATATAT--C--AAAT--GGC-ATTGAAAGGTTTT--AAAG-TGGC-ACTTG--C-ATGCCATA-GATGTT---TGGACA-TAAATCTTT-CATATTGTT--TT-AATGTTGACC-AAAAAA--AAAACCAAAAA-AAA-CCCCCACAATACTTACTTGTATATAGA-TGAACGTTCACAA---GTGTTAT-GAT---G-AG-ATTTTAAAAA--CAAGCCCTTTTTTTTTTCCATTAGG-TTTTCTT-TTTTTTTTA--T-TTCCTTT-TTGT--------------TT-TTATTTTTTA-TTTTTTTTGGGGGGGGGCAG-G-GAAGA--A-TG-A-TGAGAAATG-CC-TGAGC-CCGAA----GGCATG---TATTC-AAAAAAGTTTTC--GTGAAatgaagctagcaagtggcatatatattatgcaacaaaatacaaagttaaacgtgatttctgctggggtttttccctctaaaagtttgaaatatgccacatgtagcttataaacactgactatatatcaaatggcattgaaaggttttaaagtggcacttgcatgccatagatgtttggacataaatctttcatattgttttaatgttgaccaaaaaaaaaaccaaaaaaaacccccacaatacttacttgtatatagatgaacgttcacaagtgttatgatgagattttaaaaacaagcccttttttttttccattaggttttcttttttttttatttcctttttgtttttattttttattttttttgggggggggcagggaagaatgatgagaaatgcctgagcccgaaggcatgtattcaaaaaagttttcgtgaacggac
gi|4 : attttgttcacgaaaaaattgctcttccttacaatcatcggacatgtttatcataaagtcaattcttacagccgatcactctctTTCAAAAAAT---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCTTACAGGCC-AATCA------CT-----------CTC-------TTGC----------ATAAGAATAATTTC--AAGTACG-ATTTATCAT-T---T-AATGC--AA--ATCATCG-TCT-GTAGA--A-CGA---TGTCAGT-TTT-----------------------------TCCCT-A-GT-TG-C----AATTTATGTCCAGTT-C-----AATATAATTTTAGAGTACCGTAGATGC-----TATCTTCGA-T-T-----GATcggac
gi|4 : TGCATAAGAATAATT--TCAAGT-----A-CGAT-TTATCA---TTT-AATGCA--A--ATC-A--TCG-------TCTGTAG-AA-CG-ATGTCAGTTTTTCCCTAGTTGCA----A-------TTTAT-GT-CC--AG-------------TTCAA-TAT-----AATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAA-CTAGTAA-GTG--GCAT-TA------TA-TTATGCAAC-AAA-TACCAAAGT----AA--CT-TGATTT-TG-C-------TGGGGGTTTTC--CCTCTAAAA-G----TTTGG-CT-TTGGA-ATGCCA-C--ATGTAGCTT-AT--AAGAA-CACC--G-AC--AATAT--C-AAAATGG--C-ATTG-AA--TTTT--AAAAAT-GC-ACTTG--C-A-G-CATAAGATTTT---GGGAC--TAAAAC-TT-CAT-ATGTTAATT-AA-GTAAACA-AAAAAATTTAAA--AAAAAC----CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GGGTTAT-GAT---A-AG-ATTTA-AAAA--CAA-----------GCTCTA----G-T----CT-TTATCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TAT-----------GGGCAT-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTAAAGACacgaactagtaagtggcattatattatgcaacaaataccaaagtaacttgattttgctgggggttttccctctaaaagtttggctttggaatgccacatgtagcttataagaacaccgacaatatcaaaatggcattgaattttaaaaatgcacttgcagcataagattttgggactaaaacttcatatgttaattaagtaaacaaaaaaatttaaaaaaaacccaccaatacttatttgtatataatgaacgtcacaagggttatgataagatttaaaaacaagctctagtctttatctgtattttattttcgggcatgttaatttttgtatgggcatggaaaattgatggaaatgcctgcccgaagggcatgtattcaaaaaaagttttcgtaaagac
gi|5 : ttcaaaaaatttgcttttccttacaatcatcggacatgtttatcataaagtcaattcttacaggccaatcactctctAAAA---TTGCTTT------TCCTT-ACA------------ATCATT-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACA-GCC-GATCA------TT-----------CCC-------TTGC----------GTAAGAATAATTTT--AAGTATG-ACTTATCAT-T---T-AATCTGTAA--A-GATT--TCC-------------C-CTA--G---T-----TGCA-AG--ATT-G--T-G-------TCC----------------AGTTCATAT--------A----GATATAATTTTAGAGTACCGTAGATGC-----TATCTTTGATT-T-----GAAGCTAGTAAGTGGCATATATATTAT
gi|5 : TTC--A--TACA-GCCGATCAT-TCCCT---TGCGTAAGAATAATT--TTAAGT-----A-TGAC-TTATCA---TTT-AATCTGTAA--AG--A--TTT-------CCCCTA--GT-TGCA----AGATTGTGTCCAGTT-CA-------------------TA---TAGATA------------------T-----AATTTTAG--AGTACCGTAGATGCTATCTTTGATT-----T-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTT-TG-C-------GGGGGGTTTTC--CCT---------------------------ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--G-AC--TATAT--TTAAAATG---C-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CAAAAGATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AGA--------CAAA-CCAC--CAATACTTATTTATATATA-A-TGAACA-TCACAA---GTGTTATTGAT---A-AG-ATTT--AAAAAACAA-----------TCTCTA----G-T----CT-TTTTCTGTA--T-TTTATTT-TTGGG-----------CATG-CTAA-TTTTG-TTT-----------GGGCAG-G-GAAAAACT-TG---TG-GAAATG-CC-T--GT-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACTgcaacaaaatacaaagttaaacgtgattttgcggggggttttccctatgccacatgcagcttataaacaccgactatatttaaaatgcattggaattttaaagtgcacttgcagcaaaagattttgggactaaaacttcatttgttaattaagtaaacaaaaaaaagacaaaccaccaatacttatttatatataatgaacatcacaagtgttattgataagatttaaaaaacaatctctagtctttttctgtattttatttttgggcatgctaattttgtttgggcagggaaaaacttgtggaaatgcctgtccgaagggcatgtattcaaaaaaagttttcgtgaagact
gi|6 : aaaattgcttttccttacaatcattggacatgtttatcataaagtcaaTCTTTGATTAGATACCGAAGCTAGTAAAGTG--GC-TAAC------TA-T-ATGCAACGAAAATAC-AAAGT--TTAA--CGGTGATTT-TT-C-------TGGGGTTTT-C--CCTCTAAAAAG----TTTGG-CT-TTGAA-ATGCCATC--ATGACCCTT-AT--AA--A-CACC--GGAC--TATAT--C-AAAA-ATGGCAATAGGAA--TATT--AAAT-T-GC-ACTTG--CAA-G-CATA-TA----------AC--TCAA---TT---T-TTACTAA---GA-GAAAACA-AAACAA--AAAG--AAAGACAAACCCAC--CAATACTTATTTGTATATA-A-TGCA-G-TCATAA---GTGCT-T-TAT---A-AG-ATT----AAA--CAA-----------TCTCCA----GAT----CTAATTTCT-TA--TATTTATTTATCGGC-----------AATGATTAA--GTTG--TC-----------GGGCAG-GCGGAAA--TATGAA-TA-GATGCG-CCTT--GCACCGAA-----GCATA---TA-TCAAAAAAAGTTTTC---TGAAGA
gi|7 : ---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTC--AT-C-ATATTAAA---GTCAATTCATACA-GCC-GATCA------TT-----------CTC-------TTGC----------ATAAGATTAATTTC--AAGTATG-ACTTATCAT-T---T-AACGCATAA--ATCATTG-TCT-GTAAAGAA-CGACGTTA--G---TTT-TAT-----------------G-------TCC----------------AGTTCAT----------------ATA--ATTTTAGAGTACCG------------CATCTTTGA-T-T-----GATact
gi|7 : -T-----AATTTTAG--AGTACCGCA-------TCTTTGATT-GATAC-AAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATGC-AATGTTATAAA--CG-TAATTT-TG-C-------TGGGGGTTTTC--TCTCTAAAA-GTTAATTTGG-CT-TTGAA-ATGTCA-C--ATGCAGCTT-AC--AA--A-CATC--G-AC--TATAT--C-AAAAT--GGC-ATTAAAA--TTTT--GAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAacaaagctagtaagtggcatatatattatgcaacaaaatgcaatgttataaacgtaattttgctgggggttttctctctaaaagttaatttggctttgaaatgtcacatgcagcttacaaacatcgactatatcaaaatggcattaaaattttgaagtgcacttgcagcatagattttggga
gi|8 : ttgcttttccttacaatcatcggacatgttcatcatattaaagtcaattcatacagccgatcattctcttgcataagattaatttcaagtatgacttatcatttaacgcataaatcattgtctgtaaagaacgacgttagttttatgtccagttcataA--ATAATT--TCAAGT-----A-CGAC-TTATCA---TTTCAATGCATAA--GTCGA--TCAGAGTTTTTCCCTA--GT-CGCA----AGTTTATGTCCAGTT-CA------TATAATTTTAGAGTACCGTAGATGC-----TATCTTCGA-T-T-----GAT
gi|8 : taagATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-Tacgaagctagtaagtggcatatatatactttgaaatgccacatggagctttattaaaacaccgaatatatatcaaaatggcattgaaattttaatgtgcacttgcagcatagaatttgggactcaaacttcatttttaattaagtaaacaataaaaaaaaaaacaccaatacttgtatataatgaacgtcacaggtgttatgata
gi|8 : taagaataatttcaagtacgacttatcatttcaatgcataagtcgatcagagtttttccctagtcgcaagtttatgtccagttcatata-CT-TTGAA-ATGCCA-C--ATGGAGCTTTATTAAA--A-CACC--G-AA--TATATATC-AAAATGG--C-ATTGAAA--TTTT--AATG-T-GC-ACTTG--C-A-G-CATA-GAATTT---GGGAC--TCAAAC-TT-CAT-TT-TTAATT-AA-GTAAACA-ATAAAA--AAAA--AAA--------CAC--CAATAC----TTGTATATA-A-TGAACG-TCACAG---GTGTTAT-GAT---A-actttgaaatgccacatggagctttattaaaacaccgaatatatatcaaaatggcattgaaattttaatgtgcacttgcagcatagaatttgggactcaaacttcatttttaattaagtaaacaataaaaaaaaaaacaccaatacttgtatataatgaacgtcacaggtgttatgata
gi|9 : taagaataatttcaagtacgacttatcatttcaatgcataagtcgatcagagtttttccctagtcgcaagtttatgtccagttcatataattttagagtaccgtagatgctatcttcgattgatacgaagctagtaagtggcatatatataAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACG-GCC-GATCA------TT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-AC-------------------ATA----TCATT--TAA-GA-----A-CGA---TGTCAGAGTTT-----------------------------TTCCGGA-GT-TGTA----AGTCTGTGTATA----TA----AATATAATTTTAGAGTACTGCAGATGC-----TCTCTTTGA-T-T-----GAT
gi|9 : -T-----AATTTTAG--AGTACTGCAGATGCTCTCTTTGATT-GATAC-GAAGCTAGTAA-ATG--GCATAT-----------------------ACAC-AAAGT--TAAA--CA-TGATTT-TG-T-------GGGGGGTTTTC--CCTCTAAAA-G----TT--------------------------CGGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAAT--GGC-ATTGGAA--TTTT--Aacgaagctagtaaatggcatatacacaaagttaaacatgattttgtggggggttttccctctaaaagttcggcttataaacaccgactatatcaaaatggcattggaattttagggatac
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111111111 1111111111111111111 1111111 22222222222 11 33333333333333333333333333333333333333333333333333333333333333333333333333333333 333333333 111111 111111 11111111 2222 11 1111111 111 3333333333333333333333333333 22222222222 11111111111
lowQualScore : 000 999999 3 777777777777 3 3 44 3 3 555 555 1 3 3 7777777777777777777 6666666 11111111111 44 3 4 777 4 22 1 66666666666666666666666666666666666666666666666666666666666666666666666666666666 0 444444444 2 2 1 1 000000 2 3 3 77777 66 3 1 4 4 4 55 111111 4 4 4 66 66 4 4 4 66666666 1 66 4 9999 0 88888 4 4 66 0 4 66 66 4 66 4 66 66 4 0000 4 2 66 66 4 8 4 66 4 8 4 8 777 11 0 5 5 5 5 5 0 5 66 66 3333333 77 5 5 5 888 5 888 5 5 555 66 4444444444444444444444444444 4 2 55 4 4 44444444444 3 3 77777777777 3 3 55 3 555 3 3 3 55 3 666 666 55
lowQualScore : ... ...... . ............ . . .. . . ... ... . . . ................... ....... ........... .. . . ... . .. . ................................................................................ . ......... . . . . ...... . . . ..... .. . . . . . .. ...... . . . .. .. . . . ........ . .. . .... . ..... . . .. . . .. .. . .. . .. .. . .... . . .. .. . . . .. . . . . ... .. . . . . . . . . .. .. ....... .. . . . ... . ... . . ... .. ............................ . . .. . . ........... . . ........... . . .. . ... . . . .. . ... ... ..
lowQualScore : 444 666666 3 111111111111 3 3 66 3 3 888 888 0 6 6 5555555555555555555 8888888 44444444444 66 3 0 000 0 77 4 55555555555555555555555555555555555555555555555555555555555555555555555555555555 5 000000000 0 0 4 4 555555 6 6 1 77777 11 4 7 0 0 0 55 555555 0 4 4 11 11 4 4 4 22222222 7 11 4 4444 1 77777 4 4 11 9 4 11 11 4 11 4 11 11 4 1111 4 7 11 11 4 9 4 11 4 9 4 9 888 99 4 0 0 0 0 0 4 0 99 99 5555555 99 7 7 0 888 0 888 0 7 000 99 1111111111111111111111111111 4 5 55 0 0 55555555555 6 6 33333333333 6 6 00 6 111 6 6 6 00 6 444 444 00
consensus : GTTCACGAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCNTACA-GCC-GATCA------CT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCATT--TCN-GT-----A-CGAC-TTATCA---TTT-AATGCATAA--ATC-A--TCG-------TCCCTAA-GT-TG-A----AGTTTATGTCCAGTT-CA----AATATAATTTTAGAGTACCGTAGATGC-----TATCTTCGA-T-T-----GATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTT-TG-C-------TGGGGTTTTTC--CCTCTAAAA-G----TTTGG-CT-TTGAA-ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAATGGGGC-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AAAA--AAAAACAAA-CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GTGTTAT-GAT---A-AG-ATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACT
Reference ( family-2489 ) : GTTCACGAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCNTACA-GCC-GATCA------CT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCATT--TCN-GT-----A-CGAC-TTATCA---TTT-AATGCATAA--ATC-A--TCG-------TCCCTAA-GT-TG-A----AGTTTATGTCCAGTT-CA----AATATAATTTTAGAGTACCGTAGATGC-----TATCTTCGA-T-T-----GATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTT-TG-C-------TGGGGTTTTTC--CCTCTAAAA-G----TTTGG-CT-TTGAA-ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAATGGGGC-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AAAA--AAAAACAAA-CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GTGTTAT-GAT---A-AG-ATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACT
gi|1 : GTTCACGAAAA---TTTCTTT------TCCTT-ACA------------ATCATC-AGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACA-GCC-GATCA------CT-----------CAC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACATATCAT-T---T-AATGCATAA--ATCATTA-TCT-GT-----AGCGTT-NTATCA---TTT-AATGCATAA--ATC-A--TCA-------TCTGTAACGT-T--A----AGTTTGTGTCCAGTT-CATATTGATATAATTTTAGAGTACTGTAAATGC-----TATCTTTGA-T-T-----GGNTTTAG--AGTACTGTAGATGCTATCTTTGATT-GGTAC-GAAGTTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-TAAGT--TAAA--CG-TGATTT-TG-C--------GGGGTTTTTTTTCCTTTAAAA-G----TTTGG-CT-TTGAA-ATGCCA-C--ATTCAGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAATGGGGC-ATTGGAA--TGTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAGAAA--GAAA--AAAGACAAA-CCAT--CAATACTTATTTAT-CATA-A-TAAACG-TCACAA---GTGTTGT-GAT---A-AGAATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTGTTT-TTGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TT-T-TG-GAAATG-CT-T--GC-CCGAA---GGGCATG---TATTCAAAACAAGTTTTC--GTGAAGACT
gi|10 : CACGAAA-----TGCTTT------TCCTT-ACA------------GTCAGT-GGAA-A-GTT---AT-C-A-A---AA---GTCAATTCATAC--GCC-GATCA------TT-----------CTCGTACAGATTGC-----------TAAGAATAATTTT--AAGTTCG-ACTTCTAGTAT---T-AATGCA-AA--AT
gi|11 : AACA-TTACAATATGTGCTAT-CATTAAACAA-ACTT--AAAA--TGT-----------T-----------T----CT-TTTTC---A--T-CTT-TTT-TGGGGGAAGAGGGGGGCATG-TTGATTTTTT-ATC-----------GGGCAG-G-TGAAA--T-TG-A-TA-AAAAGA-CC-T--GC-CCGAA---GGGCATG---TGTTCAAAAAAAGTTCTC--GTGAAGACtgaacaatgtcagagtttttccctgttgcaagttgtgtccacttcatatctgaa
gi|12 : CAGGAAAG---TTGCTTT-------CCTT-ACATGTATATGTATAATCATT-AGAC-GTGTTT--CTTC-ATA---CATCTGACCATTCTTATG-GC------A------CT------------TC-------CTGT----------GCAAGAATACTTAT--AA-TA---ACTTAACAA-T---T-AATGCATAA--Acg
gi|13 : atgtactaattttatg--CAA-----------ATTTCA----A-C----CT-TTTTCTGTATCT-TTTATAT---AGG-----------CATG-TTAATTTTTG-TCC-----------AGGCAG-G-TGAAA--T-TG-A-TA-GAAACA-CC-T--GA-TCGAA---GGGTATA---TATTTAATTAATGTTTTT--GTGAAGACT
gi|14 : CA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCAAT-----------TATG-TTAATTTTTG-TTC-----------GGGCAG-A-GAAAA--T-TG-A-TG-GAAATG-TC-T--GC-CCGAA---GGGCATG---TATTCAAAAAATGTTTTT--GTGAAGACT
gi|15 : AAAA---TTGCTTT-------CCTT-TCA------------ATCATC-AGAC-GTG--T--AT-T-ATA---A-----TTAATTCTTACA-ACT-GATCA------TTCTCATGGTCACCTC-------TTGCATATTTAAGAATAAGAATAATCAT--AAGTACA-ACTg
gi|16 : GTGCACGAATA---TTGCTTT------TCCTC-ACA------------ATCATC-GGAC-ATGTTC--AT-T-ATA---AA---GTCAATTCGTACA-GCC-AATGA------TT-----------TTC-------TAGC----------GTAAGAATAAATTC--AAGTACA-AC
gi|17 : tGTA--T-TTCATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCGG-G-GAAAA--T-TG-A-CG-AAAATG-CC-T--GC-CCAAA---GGGCAGG---TGTTCATAAAAAGTTTTC--GTGAAGACT
gi|18 : TT-GCTAC-AAAGCTAGTAA-GTG--GCATATACATGTATA-TTATGCAAC-AAAATGC-AAAGT--TAAA--CA-TGATTT-TG-C-------TGGGGTTTTTC--TCTCTAAAA-G----TT
gi|19 : G-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-AG-GAAATG-CC-T--GC-CCAAC---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACTaa
gi|2 : GTTCACAAAAAAAATTGTTTT------TCCTT-ACA------------ATCATCCAGACCATGTTTTGAT-CCATA---AA---GTCA--TCTTACA-GCCCGATAAACTAATCT-----------CTCAT-----TTGCC---------ATAAGAATAATTTTTAAAGTGTGGACTTATCAT-T---TTAATGCATAA--ATCATTCATCT-G--------CGA---TA--A---T---AAAGAACGATGGTC-AGTTTT-------TCCCTAA-GTGTG-ATCATAGTTTATGTCCAGTT-AC----ACTATAATTT----------TAGG---------ATCTC--A-T-T-----CAGTTC-----GT---GTGGACGCT---------T-GATAT-G----TAG-AA-GTCCTGTATAGA------TAATTATGCAAC-AAAATAC-AAAGT--TAAAAACG-TGATTT-TGACGGATTGGTGGAGTTTTCC--CATCTAAAA-G----TTTGGGCTATTGAA--TGCCA-CCAATGTAGCTT-AT--AA--AACACCAGG-AC--AATAT--C-AAAATGGGCC-ATTTAAA--TTTTTAAAAG-TCGCGACTTGGCC-ATG-C-TA-GATCTTTTGGGGACCTTAAAAC-TTTCAT-ATGTTAATT-AA-GT---CA-AACAAA--AAAA--AAAAAC----CCAC--CCATACTTATTTGTATATA-ATTGAACG-TCA-AA---GTGTGAT-GAA---G-AG-ATTT-----------------------------------------------------T-TTTA-TT-TCGGGTC---------CATG-TTAATTTTTGATTC------------TGCAGTG-GAAA-----TG-ACTG-GAAATGACC-T--GC-CCAAAGACGGGCATGTGATATT--AAAAAAGTTTTCCAATGAAGAg
gi|20 : taaattttAG-T-GC-ACTTG--C-A-G-CAAA-GATTTT---GGGAC--TAGAAC-TT-CAT-TTGTTAATTGAA-GTAAACATTACTAA--ACAA--AACAACAA
gi|21 : GTGCAAGAAAA---TCATTTTCCAGAATCCTTTATC------------GTCATC-AGAC-ATGTTC--AT-T-ATA---AA---GTc
gi|3 : taattttGTTCACGAAAAAA-TTGCTCT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCTTACA-GCC-GATCA------CT-----------CTC-------TTGC----------ATAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCAT----------------CG----------------AATGCAT-G--TTC-AGTTTT-------TCCCT-A-GT-TGCA----AGTTTATGTCCAGTT-C------ATATAATTTTAGAGTACCGTAGATGC-----TGTCTTCGA-T-T-----GAT
gi|3 : attttTGCATAAGAATAATT--TCAAGT-----A-CGAC-TTATCA---TTT-AATGCATAA--ATC-A--TCG--------------------------AATGCATGTTCAGTT---------------TTT------CCCTAGTTGCAAGTTTATGTCCAG-T-TCATATAATTTTAG--AGTACCGTAGATGCTGTCTTCGATT-GATAT-GAAGCTAGCAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTTCTG-C-------TGGGGTTTTTC--CCTCTAAAA-G----TTTG-------AAATATGCCA-C--ATGTAGCTT-AT--AA--A-CACT--G-ACTATATAT--C--AAAT--GGC-ATTGAAAGGTTTT--AAAG-TGGC-ACTTG--C-ATGCCATA-GATGTT---TGGACA-TAAATCTTT-CATATTGTT--TT-AATGTTGACC-AAAAAA--AAAACCAAAAA-AAA-CCCCCACAATACTTACTTGTATATAGA-TGAACGTTCACAA---GTGTTAT-GAT---G-AG-ATTTTAAAAA--CAAGCCCTTTTTTTTTTCCATTAGG-TTTTCTT-TTTTTTTTA--T-TTCCTTT-TTGT--------------TT-TTATTTTTTA-TTTTTTTTGGGGGGGGGCAG-G-GAAGA--A-TG-A-TGAGAAATG-CC-TGAGC-CCGAA----GGCATG---TATTC-AAAAAAGTTTTC--GTGAAatgaagctagcaagtggcatatatattatgcaacaaaatacaaagttaaacgtgatttctgctggggtttttccctctaaaagtttgaaatatgccacatgtagcttataaacactgactatatatcaaatggcattgaaaggttttaaagtggcacttgcatgccatagatgtttggacataaatctttcatattgttttaatgttgaccaaaaaaaaaaccaaaaaaaacccccacaatacttacttgtatatagatgaacgttcacaagtgttatgatgagattttaaaaacaagcccttttttttttccattaggttttcttttttttttatttcctttttgtttttattttttattttttttgggggggggcagggaagaatgatgagaaatgcctgagcccgaaggcatgtattcaaaaaagttttcgtgaacggac
gi|4 : attttgttcacgaaaaaattgctcttccttacaatcatcggacatgtttatcataaagtcaattcttacagccgatcactctctTTCAAAAAAT---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCTTACAGGCC-AATCA------CT-----------CTC-------TTGC----------ATAAGAATAATTTC--AAGTACG-ATTTATCAT-T---T-AATGC--AA--ATCATCG-TCT-GTAGA--A-CGA---TGTCAGT-TTT-----------------------------TCCCT-A-GT-TG-C----AATTTATGTCCAGTT-C-----AATATAATTTTAGAGTACCGTAGATGC-----TATCTTCGA-T-T-----GATcggac
gi|4 : TGCATAAGAATAATT--TCAAGT-----A-CGAT-TTATCA---TTT-AATGCA--A--ATC-A--TCG-------TCTGTAG-AA-CG-ATGTCAGTTTTTCCCTAGTTGCA----A-------TTTAT-GT-CC--AG-------------TTCAA-TAT-----AATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAA-CTAGTAA-GTG--GCAT-TA------TA-TTATGCAAC-AAA-TACCAAAGT----AA--CT-TGATTT-TG-C-------TGGGGGTTTTC--CCTCTAAAA-G----TTTGG-CT-TTGGA-ATGCCA-C--ATGTAGCTT-AT--AAGAA-CACC--G-AC--AATAT--C-AAAATGG--C-ATTG-AA--TTTT--AAAAAT-GC-ACTTG--C-A-G-CATAAGATTTT---GGGAC--TAAAAC-TT-CAT-ATGTTAATT-AA-GTAAACA-AAAAAATTTAAA--AAAAAC----CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GGGTTAT-GAT---A-AG-ATTTA-AAAA--CAA-----------GCTCTA----G-T----CT-TTATCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TAT-----------GGGCAT-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTAAAGACacgaactagtaagtggcattatattatgcaacaaataccaaagtaacttgattttgctgggggttttccctctaaaagtttggctttggaatgccacatgtagcttataagaacaccgacaatatcaaaatggcattgaattttaaaaatgcacttgcagcataagattttgggactaaaacttcatatgttaattaagtaaacaaaaaaatttaaaaaaaacccaccaatacttatttgtatataatgaacgtcacaagggttatgataagatttaaaaacaagctctagtctttatctgtattttattttcgggcatgttaatttttgtatgggcatggaaaattgatggaaatgcctgcccgaagggcatgtattcaaaaaaagttttcgtaaagac
gi|5 : ttcaaaaaatttgcttttccttacaatcatcggacatgtttatcataaagtcaattcttacaggccaatcactctctAAAA---TTGCTTT------TCCTT-ACA------------ATCATT-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACA-GCC-GATCA------TT-----------CCC-------TTGC----------GTAAGAATAATTTT--AAGTATG-ACTTATCAT-T---T-AATCTGTAA--A-GATT--TCC-------------C-CTA--G---T-----TGCA-AG--ATT-G--T-G-------TCC----------------AGTTCATAT--------A----GATATAATTTTAGAGTACCGTAGATGC-----TATCTTTGATT-T-----GAAGCTAGTAAGTGGCATATATATTAT
gi|5 : TTC--A--TACA-GCCGATCAT-TCCCT---TGCGTAAGAATAATT--TTAAGT-----A-TGAC-TTATCA---TTT-AATCTGTAA--AG--A--TTT-------CCCCTA--GT-TGCA----AGATTGTGTCCAGTT-CA-------------------TA---TAGATA------------------T-----AATTTTAG--AGTACCGTAGATGCTATCTTTGATT-----T-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTT-TG-C-------GGGGGGTTTTC--CCT---------------------------ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--G-AC--TATAT--TTAAAATG---C-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CAAAAGATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AGA--------CAAA-CCAC--CAATACTTATTTATATATA-A-TGAACA-TCACAA---GTGTTATTGAT---A-AG-ATTT--AAAAAACAA-----------TCTCTA----G-T----CT-TTTTCTGTA--T-TTTATTT-TTGGG-----------CATG-CTAA-TTTTG-TTT-----------GGGCAG-G-GAAAAACT-TG---TG-GAAATG-CC-T--GT-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACTgcaacaaaatacaaagttaaacgtgattttgcggggggttttccctatgccacatgcagcttataaacaccgactatatttaaaatgcattggaattttaaagtgcacttgcagcaaaagattttgggactaaaacttcatttgttaattaagtaaacaaaaaaaagacaaaccaccaatacttatttatatataatgaacatcacaagtgttattgataagatttaaaaaacaatctctagtctttttctgtattttatttttgggcatgctaattttgtttgggcagggaaaaacttgtggaaatgcctgtccgaagggcatgtattcaaaaaaagttttcgtgaagact
gi|6 : aaaattgcttttccttacaatcattggacatgtttatcataaagtcaaTCTTTGATTAGATACCGAAGCTAGTAAAGTG--GC-TAAC------TA-T-ATGCAACGAAAATAC-AAAGT--TTAA--CGGTGATTT-TT-C-------TGGGGTTTT-C--CCTCTAAAAAG----TTTGG-CT-TTGAA-ATGCCATC--ATGACCCTT-AT--AA--A-CACC--GGAC--TATAT--C-AAAA-ATGGCAATAGGAA--TATT--AAAT-T-GC-ACTTG--CAA-G-CATA-TA----------AC--TCAA---TT---T-TTACTAA---GA-GAAAACA-AAACAA--AAAG--AAAGACAAACCCAC--CAATACTTATTTGTATATA-A-TGCA-G-TCATAA---GTGCT-T-TAT---A-AG-ATT----AAA--CAA-----------TCTCCA----GAT----CTAATTTCT-TA--TATTTATTTATCGGC-----------AATGATTAA--GTTG--TC-----------GGGCAG-GCGGAAA--TATGAA-TA-GATGCG-CCTT--GCACCGAA-----GCATA---TA-TCAAAAAAAGTTTTC---TGAAGA
gi|7 : ---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTC--AT-C-ATATTAAA---GTCAATTCATACA-GCC-GATCA------TT-----------CTC-------TTGC----------ATAAGATTAATTTC--AAGTATG-ACTTATCAT-T---T-AACGCATAA--ATCATTG-TCT-GTAAAGAA-CGACGTTA--G---TTT-TAT-----------------G-------TCC----------------AGTTCAT----------------ATA--ATTTTAGAGTACCG------------CATCTTTGA-T-T-----GATact
gi|7 : -T-----AATTTTAG--AGTACCGCA-------TCTTTGATT-GATAC-AAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATGC-AATGTTATAAA--CG-TAATTT-TG-C-------TGGGGGTTTTC--TCTCTAAAA-GTTAATTTGG-CT-TTGAA-ATGTCA-C--ATGCAGCTT-AC--AA--A-CATC--G-AC--TATAT--C-AAAAT--GGC-ATTAAAA--TTTT--GAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAacaaagctagtaagtggcatatatattatgcaacaaaatgcaatgttataaacgtaattttgctgggggttttctctctaaaagttaatttggctttgaaatgtcacatgcagcttacaaacatcgactatatcaaaatggcattaaaattttgaagtgcacttgcagcatagattttggga
gi|8 : ttgcttttccttacaatcatcggacatgttcatcatattaaagtcaattcatacagccgatcattctcttgcataagattaatttcaagtatgacttatcatttaacgcataaatcattgtctgtaaagaacgacgttagttttatgtccagttcataA--ATAATT--TCAAGT-----A-CGAC-TTATCA---TTTCAATGCATAA--GTCGA--TCAGAGTTTTTCCCTA--GT-CGCA----AGTTTATGTCCAGTT-CA------TATAATTTTAGAGTACCGTAGATGC-----TATCTTCGA-T-T-----GAT
gi|8 : taagATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-Tacgaagctagtaagtggcatatatatactttgaaatgccacatggagctttattaaaacaccgaatatatatcaaaatggcattgaaattttaatgtgcacttgcagcatagaatttgggactcaaacttcatttttaattaagtaaacaataaaaaaaaaaacaccaatacttgtatataatgaacgtcacaggtgttatgata
gi|8 : taagaataatttcaagtacgacttatcatttcaatgcataagtcgatcagagtttttccctagtcgcaagtttatgtccagttcatata-CT-TTGAA-ATGCCA-C--ATGGAGCTTTATTAAA--A-CACC--G-AA--TATATATC-AAAATGG--C-ATTGAAA--TTTT--AATG-T-GC-ACTTG--C-A-G-CATA-GAATTT---GGGAC--TCAAAC-TT-CAT-TT-TTAATT-AA-GTAAACA-ATAAAA--AAAA--AAA--------CAC--CAATAC----TTGTATATA-A-TGAACG-TCACAG---GTGTTAT-GAT---A-actttgaaatgccacatggagctttattaaaacaccgaatatatatcaaaatggcattgaaattttaatgtgcacttgcagcatagaatttgggactcaaacttcatttttaattaagtaaacaataaaaaaaaaaacaccaatacttgtatataatgaacgtcacaggtgttatgata
gi|9 : taagaataatttcaagtacgacttatcatttcaatgcataagtcgatcagagtttttccctagtcgcaagtttatgtccagttcatataattttagagtaccgtagatgctatcttcgattgatacgaagctagtaagtggcatatatataAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACG-GCC-GATCA------TT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-AC-------------------ATA----TCATT--TAA-GA-----A-CGA---TGTCAGAGTTT-----------------------------TTCCGGA-GT-TGTA----AGTCTGTGTATA----TA----AATATAATTTTAGAGTACTGCAGATGC-----TCTCTTTGA-T-T-----GAT
gi|9 : -T-----AATTTTAG--AGTACTGCAGATGCTCTCTTTGATT-GATAC-GAAGCTAGTAA-ATG--GCATAT-----------------------ACAC-AAAGT--TAAA--CA-TGATTT-TG-T-------GGGGGGTTTTC--CCTCTAAAA-G----TT--------------------------CGGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAAT--GGC-ATTGGAA--TTTT--Aacgaagctagtaaatggcatatacacaaagttaaacatgattttgtggggggttttccctctaaaagttcggcttataaacaccgactatatcaaaatggcattggaattttagggatac
blockSeqs : AAA CCAGAA T TGTATATGTATA C C TG T C TTA TCT A G C TTCTCATGGTCAC GTACAGA ATATTTAAGAA TA G A CCC T GA C TCAAGTACGACTTATCATTTCAATGCATAAGTCGATCAGAGTTTTTCCCTAGTCGCA ACAC T A G G CAAGTT C T A CATAT TA G C A C A CT CATGTA A G C TA AA G C A GGATTGGT T . A TTAA GGCTA T T CA T TA GA A AG G TA AT T GGGC A A GG TA A C G GC A T C A TTG CT T T A G T T TT CC GACAAAC CA G T T TAT T TAA C . TAA AA GCCCTTTTTTTTTTCCATTAGGTTTTC A G TC A A GAAGAGGGGGG A A TTTTTGGGGGG T C AC A AC A A T GA A GAC TGA CA
blockSeqs : AA . . . . . . . . . . T . . ACTAATCT AT CA . . . . . GA C CATCTGCGATAATAAAGAACGATGGTCAGTTTTTCCCTAAGTGTGATCAT GCAA T A C A C C . . . . A C . . . . . . . . . . . . . T T . . . GCT . . . . . . . . . . . . ATGG . A . . . G . . . T . A . A . . . . . . . . AAAAA . . . . . . . . . AA . TCTCCAGAT . G . . . TC . . . . . . . AA . . . . . . . .
blockSeqs : . . . . . . . . . . . T . . TT . G . . . . . GA A TCAAGTACGATTTATCATTTAATGCAAATCATCGTCTGTAGAACGATGTC TAAA T A G T C C . . . . A T . . . . . . . . . . . . . T T . . . GCT . . . . . . . . . . . . GG . G . . . . . . . . . . . . . . . . . . . . CAAA . . . . . . . . . A . ATTTCAAC . G . . . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . G . . CT . G . . . . . . C TTAAGTATGACTTATCATTTAATCTGTAAAGATTTCCCCTAGTTGCA CAA T A G A C C . . . . A T . . . . . . . . . . . . . T G . . . GCT . . . . . . . . . . . . GG . G . . . . . . . . . . . . . . . . . . . . AAC . . . . . . . . . A . GCTCTAGT . T . . . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . T . . TT . A . . . . . . A TCAAGTACGACTTATCATTTAATGCATAAATCATCG AGA T A G A C T . . . . A T . . . . . . . . . . . . . G G . . . . . . . . . . . . . . . . GG . A . . . . . . . . . . . . . . . . . . . . AAC . . . . . . . . . . . TCTCTAGT . G . . . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . T . . CT . A . . . . . . G GTCTGTAGAACGATGTCAGTTTTTCCCTAGTTGC CA T A G A C T . . . . C C . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . GG . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TT . G . . . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . T . . CT . G . . . . . . A TAAGAACGATGTCAGAGTTTTTCCGGAGTTGTA CA . . G A . C . . . . . T . . . . . . . . . . . . . T G . . . . . . . . . . . . . . . . GG . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . TT . A . . . . . . C CGAATGCATGTTCAGTTTTTCCCTAGTTGCA CA . . . A . T . . . . . . . . . . . . . . . . . . . G G . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . TT . G . . . . . . A GTCTGTAAAGAACGACGTTAGTTTTATGTCC A . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . TT . . . . . C TCCCCTAGTTGCAAGATTGTGTCC . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : CA******* T******* ** GG** AAN****
originalCons : GTTCACGAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCNTACA-GCC-GATCA------CT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCATT--TCN-GT-----A-CGAC-TTATCA---TTT-AATGCATAA--ATC-A--TCG-------TCCCTAA-GT-TG-A----AGTTTATGTCCAGTT-CA----AATATAATTTTAGAGTACCGTAGATGC-----TATCTTCGA-T-T-----GATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTT-TG-C-------TGGGGTTTTTC--CCTCTAAAA-G----TTTGG-CT-TTGAA-ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAATGGGGC-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AAAA--AAAAACAAA-CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GTGTTAT-GAT---A-AG-ATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACT
finalCons : GTTCACGAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCNTACA-GCC-GATCA------CT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCATT--TCN-GT-----A-CGAC-TTATCA---TTT-AATGCATAA--ATC-A--TCG-------TCCCTAA-GT-TG-A----AGTTTATGTCCAGTTCA-------TATAATTTTAGAGTACCGTAGATGC-----TATCTTCGA-T-T-----GATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGT--TAAA--CG-TGATTT-TG-CT-------GGGGTTTTTC--CCTCTAAAA-G----TTTGG-CT-TTGAA-ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--G-AC--TATAT--C-AAAATGG--C-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-GTAAACA-AAAAAA--AAAA--AAAAAN----CCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GTGTTAT-GAT---A-AG-ATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111111111 1111111111111111111 1111111 22222222222 111 11 11111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 1111111 111111 11111111 11111111111 11 11 11111 111111 333333333333333333333333333333333 22222222222 11111111111
lowQualScore : 000 999999 3 777777777777 3 3 44 3 3 555 555 1 3 3 7777777777777777777 6666666 11111111111 44 3 3 000 3 44 4 3 77777777777777777777777777777777777777777777777777777777777777777777777777777777 6 4 33 33333 888888 777777 22 2 8888888 555 22 3 6 77777 66 3 1 4 4 4 55 111111 4 4 4 66 66 4 4 4 66666666 777 4 44444444444 4 4 66 0 4 66 66 4 00 66 66 8 66 66 4 2 66 66 4 8 4 66 4 8 4 8 777 11 0 5 5 5 5 5 5 22222 5 66 888 888 444444 77 5 5 5 888 5 888 5 5 999 444444444444444444444444444444444 4 2 55 4 4 44444444444 3 3 77777777777 3 3 55 3 555 3 3 3 55 3 666 666 55
lowQualScore : ... ...... . ............ . . .. . . ... ... . . . ................... ....... ........... .. . . ... . .. . . ................................................................................ . . .. ..... ...... ...... .. . ....... ... .. . . ..... .. . . . . . .. ...... . . . .. .. . . . ........ ... . ........... . . .. . . .. .. . .. .. .. . .. .. . . .. .. . . . .. . . . . ... .. . . . . . . . ..... . .. ... ... ...... .. . . . ... . ... . . ... ................................. . . .. . . ........... . . ........... . . .. . ... . . . .. . ... ... ..
lowQualScore : 444 666666 3 111111111111 3 3 66 3 3 888 888 0 6 6 5555555555555555555 8888888 44444444444 22 1 6 000 6 66 7 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888 2 3 66 00000 888888 111111 88 7 3333333 888 66 3 2 77777 11 4 7 0 0 0 55 555555 0 4 4 11 11 4 4 4 22222222 888 4 55555555555 4 4 11 9 4 11 11 4 66 11 11 9 11 11 4 7 11 11 4 9 4 11 4 9 4 9 888 99 4 0 0 0 0 0 0 55555 0 99 888 888 999999 99 7 7 0 888 0 888 0 7 333 222222222222222222222222222222222 4 5 55 0 0 55555555555 6 6 33333333333 6 6 00 6 111 6 6 6 00 6 444 444 00
consensus : GTTCACGAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCNTACA-GCC-GATCA------CT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCA-TT--TCNAGT-----A-CGAC-TTATCA---TTT-AATGCATAA--ATC-A--TCG-------TCCCTAA-GT-TG-A----A-GTTTATGTCCAGTT-C-A-TAT------AATTTTAGAGTACCGTAGATGC------TATC---TTCGA-T-T-----GATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGTTA--AA--CG-TGATTT-TG-C-------TGGGG--TTTTTCCCTCTAAAA-GTT----TGG-CT-TTGAA-ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--GAC--TATA--TC-AAAAT--GG--C-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-G-TAAACA-----AAA-AAAA--A---AAAA---A---AACCCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GTGTTAT-GAT---A-AG-ATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACT
Reference ( family-2489 ) : GTTCACGAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCNTACA-GCC-GATCA------CT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCA-TT--TCN-GT-----A-CGAC-TTATCA---TTT-AATGCATAA--ATC-A--TCG-------TCCCTAA-GT-TG-A----A-GTTTATGTCCAGTT-C-A-TAT------AATTTTAGAGTACCGTAGATGC------TATC---TTCGA-T-T-----GATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGTTA--AA--CG-TGATTT-TG-C-------TGGGG--TTTTTCCCTCTAAAA-GTT----TGG-CT-TTGAA-ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--GAC--TATA--TC-AAAAT--GG--C-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-G-TAAACA-----AAA-AAAA--A---AAAA---A---AANCCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GTGTTAT-GAT---A-AG-ATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACT
gi|1 : GTTCACGAAAA---TTTCTTT------TCCTT-ACA------------ATCATC-AGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACA-GCC-GATCA------CT-----------CAC-------TTGC----------GTAAGAATAATTTC--AAGTACG-ACATATCAT-T---T-AATGCATAA--ATCA-TTA-TCT-GT-----AGCGTT-NTATCA---TTT-AATGCATAA--ATC-A--TCA-------TCTGTAACGT-T--A----A-GTTTGTGTCCAGTT-C-A-TATTGATATAATTTTAGAGTACTGTAAATGC------TATC---TTTGA-T-T-----GGNTTTAG--AGTACTGTAGATGCTATCTTTGATT-GGTAC-GAAGTTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-TAAGTTA--AA--CG-TGATTT-TG-C--------GGGGTTTTTTTTCCTTTAAAA-GTT----TGG-CT-TTGAA-ATGCCA-C--ATTCAGCTT-AT--AA--A-CACC--GAC--TATA--TC-AAAATGGGG--C-ATTGGAA--TGTT--AAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-G-TAAACA-----AAG-AAAG--A---AAAA---AGACAAACCAT--CAATACTTATTTAT-CATA-A-TAAACG-TCACAA---GTGTTGT-GAT---A-AGAATTT--AAAA--CAA-----------TCTCCA----G-T----CT-TTTTCTGTA--T-TTTGTTT-TTGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TT-T-TG-GAAATG-CT-T--GC-CCGAA---GGGCATG---TATTCAAAACAAGTTTTC--GTGAAGACT
gi|10 : CACGAAA-----TGCTTT------TCCTT-ACA------------GTCAGT-GGAA-A-GTT---AT-C-A-A---AA---GTCAATTCATAC--GCC-GATCA------TT-----------CTCGTACAGATTGC-----------TAAGAATAATTTT--AAGTTCG-ACTTCTAGTAT---T-AATGCA-AA--AT---------T-GA-----A-CAA---TGTCA--------------GA--GT-----TTT-------TCCCT---GT-TGCA----A-G-TTGTGTCCACTT-C-A-TAT------
gi|11 : AACA-TTACAATATGTGCTAT-CATTAAACAA-ACTT--AAAA--TGT-----------T-----------T----CT-TTTTC---A--T-CTT-TTT-TGGGGGAAGAGGGGGGCATG-TTGATTTTTT-ATC-----------GGGCAG-G-TGAAA--T-TG-A-TA-AAAAGA-CC-T--GC-CCGAA---GGGCATG---TGTTCAAAAAAAGTTCTC--GTGAAGACctgaa
gi|12 : CAGGAAAG---TTGCTTT-------CCTT-ACATGTATATGTATAATCATT-AGAC-GTGTTT--CTTC-ATA---CATCTGACCATTCTTATG-GC------A------CT------------TC-------CTGT----------GCAAGAATACTTAT--AA-TA---ACTTAACAA-T---T-AATGCATAA--Acg
gi|13 : atgtactaattttatg--CAA-----------ATTTCA----A-C----CT-TTTTCTGTATCT-TTTATAT---AGG-----------CATG-TTAATTTTTG-TCC-----------AGGCAG-G-TGAAA--T-TG-A-TA-GAAACA-CC-T--GA-TCGAA---GGGTATA---TATTTAATTAATGTTTTT--GTGAAGACT
gi|14 : CA----G-T----CT-TTTTCTGTA--T-TTTATTT-TCAAT-----------TATG-TTAATTTTTG-TTC-----------GGGCAG-A-GAAAA--T-TG-A-TG-GAAATG-TC-T--GC-CCGAA---GGGCATG---TATTCAAAAAATGTTTTT--GTGAAGACT
gi|15 : AAAA---TTGCTTT-------CCTT-TCA------------ATCATC-AGAC-GTG--T--AT-T-ATA---A-----TTAATTCTTACA-ACT-GATCA------TTCTCATGGTCACCTC-------TTGCATATTTAAGAATAAGAATAATCAT--AAGTACA-ACTg
gi|16 : GTGCACGAATA---TTGCTTT------TCCTC-ACA------------ATCATC-GGAC-ATGTTC--AT-T-ATA---AA---GTCAATTCGTACA-GCC-AATGA------TT-----------TTC-------TAGC----------GTAAGAATAAATTC--AAGTACA-AC
gi|17 : tGTA--T-TTCATTT-TCGGG-----------CATG-TTAATTTTTG-TTC-----------GGGCGG-G-GAAAA--T-TG-A-CG-AAAATG-CC-T--GC-CCAAA---GGGCAGG---TGTTCATAAAAAGTTTTC--GTGAAGACT
gi|18 : TT-GCTAC-AAAGCTAGTAA-GTG--GCATATACATGTATA-TTATGCAAC-AAAATGC-AAAGTTA--AA--CA-TGATTT-TG-C-------TGGGG--TTTTTCTCTCTAAAA-GTT----
gi|19 : G-TTAATTTTTG-TTC-----------GGGCAG-G-GAAAA--T-TG-A-AG-GAAATG-CC-T--GC-CCAAC---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACTaa
gi|2 : GTTCACAAAAAAAATTGTTTT------TCCTT-ACA------------ATCATCCAGACCATGTTTTGAT-CCATA---AA---GTCA--TCTTACA-GCCCGATAAACTAATCT-----------CTCAT-----TTGCC---------ATAAGAATAATTTTTAAAGTGTGGACTTATCAT-T---TTAATGCATAA--ATCA-TTCATCT-G--------CGA---TA--A---T---AAAGAACGATGGTC-AGTTTT-------TCCCTAA-GTGTG-ATCATA-GTTTATGTCCAGTTAC-ACTAT------AATTT----------TAGG----------ATC---TC--A-T-T-----CAGTTC-----GT---GTGGACGCT---------T-GATAT-G----TAG-AA-GTCCTGTATAGA------TAATTATGCAAC-AAAATAC-AAAGTTA--AAAACG-TGATTT-TGACGGATTGGTGGAG--TTTTCCCATCTAAAA-GTT----TGGGCTATTGAA--TGCCA-CCAATGTAGCTT-AT--AA--AACACCAGGAC--AATA--TC-AAAAT--GGGCC-ATTTAAA--TTTTTAAAAG-TCGCGACTTGGCC-ATG-C-TA-GATCTTTTGGGGACCTTAAAAC-TTTCAT-ATGTTAATT-AA-G-T---CA-----AAC-AAAA--A---AAAA---A---AACCCAC--CCATACTTATTTGTATATA-ATTGAACG-TCA-AA---GTGTGAT-GAA---G-AG-ATTT-----------------------------------------------------T-TTTA-TT-TCGGGTC---------CATG-TTAATTTTTGATTC------------TGCAGTG-GAAA-----TG-ACTG-GAAATGACC-T--GC-CCAAAGACGGGCATGTGATATT--AAAAAAGTTTTCCAATGAAGAg
gi|20 : taaattttAG-T-GC-ACTTG--C-A-G-CAAA-GATTTT---GGGAC--TAGAAC-TT-CAT-TTGTTAATTGAA-G-TAAACATTACTAAA-CAAA--A---CAAC---A---A
gi|21 : GTGCAAGAAAA---TCATTTTCCAGAATCCTTTATC------------GTCATC-AGAC-ATGTTC--AT-T-ATA---AA---GTc
gi|3 : taattttGTTCACGAAAAAA-TTGCTCT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCTTACA-GCC-GATCA------CT-----------CTC-------TTGC----------ATAAGAATAATTTC--AAGTACG-ACTTATCAT-T---T-AATGCATAA--ATCA-T----------------CG----------------AATGCAT-G--TTC-AGTTTT-------TCCCT-A-GT-TGCA----A-GTTTATGTCCAGTT-C-A-TAT------AATTTTAGAGTACCGTAGATGC------TGTC---TTCGA-T-T-----GAT
gi|3 : attttTGCATAAGAATAA-TT--TCAAGT-----A-CGAC-TTATCA---TTT-AATGCATAA--ATC-A--TCG--------------------------A-ATGCATGTTCAGTT-----------------TTT------CCCTAGTTGCAAGTT-TATG---TCCAG-T-TCATATAATTTTAG--AGTACCGTAGATGCTGTCTTCGATT-GATAT-GAAGCTAGCAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGTTA--AA--CG-TGATTTCTG-C-------TGGGG--TTTTTCCCTCTAAAA-GTT----TG-------AAATATGCCA-C--ATGTAGCTT-AT--AA--A-CACT--GACTATATA--TC--AAAT--GG--C-ATTGAAAGGTTTT--AAAG-TGGC-ACTTG--C-ATGCCATA-GATGTT---TGGACA-TAAATCTTT-CATATTGTT--TT-AATGTTGACCA-----AAA-AAAA--AACCAAAA---A---AAACCCCCACAATACTTACTTGTATATAGA-TGAACGTTCACAA---GTGTTAT-GAT---G-AG-ATTTTAAAAA--CAAGCCCTTTTTTTTTTCCATTAGG-TTTTCTT-TTTTTTTTA--T-TTCCTTT-TTGT--------------TT-TTATTTTTTA-TTTTTTTTGGGGGGGGGCAG-G-GAAGA--A-TG-A-TGAGAAATG-CC-TGAGC-CCGAA----GGCATG---TATTC-AAAAAAGTTTTC--GTGAAatgaagctagcaagtggcatatatattatgcaacaaaatacaaagttaaacgtgatttctgctggggtttttccctctaaaagtttgaaatatgccacatgtagcttataaacactgactatatatcaaatggcattgaaaggttttaaagtggcacttgcatgccatagatgtttggacataaatctttcatattgttttaatgttgaccaaaaaaaaaaccaaaaaaaacccccacaatacttacttgtatatagatgaacgttcacaagtgttatgatgagattttaaaaacaagcccttttttttttccattaggttttcttttttttttatttcctttttgtttttattttttattttttttgggggggggcagggaagaatgatgagaaatgcctgagcccgaaggcatgtattcaaaaaagttttcgtgaacggac
gi|4 : attttgttcacgaaaaaattgctcttccttacaatcatcggacatgtttatcataaagtcaattcttacagccgatcactctctTTCAAAAAAT---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCTTACAGGCC-AATCA------CT-----------CTC-------TTGC----------ATAAGAATAATTTC--AAGTACG-ATTTATCAT-T---T-AATGC--AA--ATCA-TCG-TCT-GTAGA--A-CGA---TGTCAGT-TTT-----------------------------TCCCT-A-GT-TG-C----A-ATTTATGTCCAGTT-CAA-TAT------AATTTTAGAGTACCGTAGATGC------TATC---TTCGA-T-T-----GATcggac
gi|4 : TGCATAAGAATAA-TT--TCAAGT-----A-CGAT-TTATCA---TTT-AATGCA--A--ATC-A--TCG-------TCTGTA------G-A----ACG---ATGTC-AGTT-----------------TTT------CCCTAGTTGCAATTTATGTCCAGTTCAA-TAT-----AATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAA-CTAGTAA-GTG--GCAT-TA------TA-TTATGCAAC-AAA-TACCAAAGT----AA--CT-TGATTT-TG-C-------TGGGG--GTTTTCCCTCTAAAA-GTT----TGG-CT-TTGGA-ATGCCA-C--ATGTAGCTT-AT--AAGAA-CACC--GAC--AATA--TC-AAAAT--GG--C-ATTG-AA--TTTT--AAAAAT-GC-ACTTG--C-A-G-CATAAGATTTT---GGGAC--TAAAAC-TT-CAT-ATGTTAATT-AA-G-TAAACA-----AAA-AAATTTA---AAAA---A---AACCCAC--CAATACTTATTTGTATATA-A-TGAACG-TCACAA---GGGTTAT-GAT---A-AG-ATTT--AAAAA-CAA-----------GCTCTA----G-T----CT-TTATCTGTA--T-TTTATTT-TCGGG-----------CATG-TTAATTTTTG-TAT-----------GGGCAT-G-GAAAA--T-TG-A-TG-GAAATG-CC-T--GC-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTAAAGACacgaactagtaagtggcattatattatgcaacaaataccaaagtaacttgattttgctgggggttttccctctaaaagtttggctttggaatgccacatgtagcttataagaacaccgacaatatcaaaatggcattgaattttaaaaatgcacttgcagcataagattttgggactaaaacttcatatgttaattaagtaaacaaaaaaatttaaaaaaaacccaccaatacttatttgtatataatgaacgtcacaagggttatgataagatttaaaaacaagctctagtctttatctgtattttattttcgggcatgttaatttttgtatgggcatggaaaattgatggaaatgcctgcccgaagggcatgtattcaaaaaaagttttcgtaaagac
gi|5 : ttcaaaaaatttgcttttccttacaatcatcggacatgtttatcataaagtcaattcttacaggccaatcactctctAAAA---TTGCTTT------TCCTT-ACA------------ATCATT-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACA-GCC-GATCA------TT-----------CCC-------TTGC----------GTAAGAATAATTTT--AAGTATG-ACTTATCAT-T---T-AATCTGTAA--A-GA-TT--TCC-------------C-CTA--G---T-----TGCA-AG--ATT-G--T-G-------TCC----------------A-GTTCATAT--AG-----A-TAT------AATTTTAGAGTACCGTAGATGC------TATC---TTTGATT-T-----GAAGCTAGTAAGTGGCATATATATTAT
gi|5 : TTC--A--TACA-GCCGATCAT-TCCCT---TGCGTAAGAATAA-TT--TTAAGT-----A-TGAC-TTATCA---TTT-AATCTGTAA--AG--A--TTT-------CCCCTA--GT-TGCA----A-GATTGTGTCCAGTT-C-A-TAT----------------------AGATA----------------------T-----AATTTTAG--AGTACCGTAGATGCTATCTTTGATT-----T-GAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATAC-AAAGTTA--AA--CG-TGATTT-TG-C-------GGGGG--GTTTTCCCT---------------------------ATGCCA-C--ATGCAGCTT-AT--AA--A-CACC--GAC--TATA--TTTAAAAT--G---C-ATTGGAA--TTTT--AAAG-T-GC-ACTTG--C-A-G-CAAAAGATTTT---GGGAC--TAAAAC-TT-CAT-TTGTTAATT-AA-G-TAAACA-----AAA-AAAA--G---ACAA---A------CCAC--CAATACTTATTTATATATA-A-TGAACA-TCACAA---GTGTTATTGAT---A-AG-ATTT--AAAAAACAA-----------TCTCTA----G-T----CT-TTTTCTGTA--T-TTTATTT-TTGGG-----------CATG-CTAA-TTTTG-TTT-----------GGGCAG-G-GAAAAACT-TG---TG-GAAATG-CC-T--GT-CCGAA---GGGCATG---TATTCAAAAAAAGTTTTC--GTGAAGACTgcaacaaaatacaaagttaaacgtgattttgcggggggttttccctatgccacatgcagcttataaacaccgactatatttaaaatgcattggaattttaaagtgcacttgcagcaaaagattttgggactaaaacttcatttgttaattaagtaaacaaaaaaaagacaaaccaccaatacttatttatatataatgaacatcacaagtgttattgataagatttaaaaaacaatctctagtctttttctgtattttatttttgggcatgctaattttgtttgggcagggaaaaacttgtggaaatgcctgtccgaagggcatgtattcaaaaaaagttttcgtgaagact
gi|6 : aaaattgcttttccttacaatcattggacatgtttatcataaagtcaaTCTTTGATTAGATACCGAAGCTAGTAAAGTG--GC-TAAC------TA-T-ATGCAACGAAAATAC-AAAGTTT--AA--CGGTGATTT-TT-C-------TGGGG--TTTT-CCCTCTAAAAAGTT----TGG-CT-TTGAA-ATGCCATC--ATGACCCTT-AT--AA--A-CACCG-GAC--TATA--TCAAAAAT--GG--CAATAGGAA--TATT--AAAT-T-GC-ACTTG--CAA-G-CATA-TA----------AC--TCAA---TT---T-TTACTAA---GA-G-AAAACA-----AAACAAAA--A---GAAAGACA---AACCCAC--CAATACTTATTTGTATATA-A-TGCA-G-TCATAA---GTGCT-T-TAT---A-AG-ATT----AAA--CAA-----------TCTCCA----GAT----CTAATTTCT-TA--TATTTATTTATCGGC-----------AATGATTAA--GTTG--TC-----------GGGCAG-GCGGAAA--TATGAA-TA-GATGCG-CCTT--GCACCGAA-----GCATA---TA-TCAAAAAAAGTTTTC---TGAAGA
gi|7 : ---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTC--AT-C-ATATTAAA---GTCAATTCATACA-GCC-GATCA------TT-----------CTC-------TTGC----------ATAAGATTAATTTC--AAGTATG-ACTTATCAT-T---T-AACGCATAA--ATCA-TTG-TCT-GTAAAGAA-CGACGTTA--G---TTT-TAT-----------------G-------TCC----------------A-GTTCAT--------------AT------AATTTTAGAGTACCG-------------CATC---TTTGA-T-T-----GATact
gi|7 : TTC--A--TACA-GCCGATCAT-TC--T-CTTGCATAAG-ATTAATT--TCAAGT-----A-TGAC-TTATCA---TTT-AACGCATAA--ATC-A--TTG-------TCTGTAA-A---G-A----ACG---ACGT-------------T------AGTTTTAT-GT-CC--AG-----------------TTC-A-TAT-----AATTTTAG--AGTACCGCA-------TCTTTGATT-GATAC-AAAGCTAGTAA-GTG--GCATATA------TA-TTATGCAAC-AAAATGC-AATGTTATAAA--CG-TAATTT-TG-C-------TGGGG--GTTTTCTCTCTAAAA-GTTAATTTGG-CT-TTGAA-ATGTCA-C--ATGCAGCTT-AC--AA--A-CATC--GAC--TATA--TC-AAAAT--GG--C-ATTAAAA--TTTT--GAAG-T-GC-ACTTG--C-A-G-CATA-GATTTT---GGGAacaaagctagtaagtggcatatatattatgcaacaaaatgcaatgttataaacgtaattttgctgggggttttctctctaaaagttaatttggctttgaaatgtcacatgcagcttacaaacatcgactatatcaaaatggcattaaaattttgaagtgcacttgcagcatagattttggga
gi|8 : ttgcttttccttacaatcatcggacatgttcatcatattaaagtcaaA--ATAA-TT--TCAAGT-----A-CGAC-TTATCA---TTTCAATGCATAA--GTCGA--TCAGAGTTTTTCCCTA--GT-CGCA----A-GTTTATGTCCAGTT-C-A-TAT------AATTTTAGAGTACCGTAGATGC------TATC---TTCGA-T-T-----GAT
gi|8 : taagATTTTAG--AGTACCGTAGATGCTATCTTCGATT-GATAC-GAAGCTAGTAA-GTG--GCATATA------TA-Tacgaagctagtaagtggcatatatatactttgaaatgccacatggagctttattaaaacaccgaatatatatcaaaatggcattgaaattttaatgtgcacttgcagcatagaatttgggactcaaacttcatttttaattaagtaaacaataaaaaaaaaaacaccaatacttgtatataatgaacgtcacaggtgttatgata
gi|8 : taagaataatttcaagtacgacttatcatttcaatgcataagtcgatcagagtttttccctagtcgcaagtttatgtccagttcatata-CT-TTGAA-ATGCCA-C--ATGGAGCTTTATTAAA--A-CACC--GAA--TATATATC-AAAAT--GG--C-ATTGAAA--TTTT--AATG-T-GC-ACTTG--C-A-G-CATA-GAATTT---GGGAC--TCAAAC-TT-CAT-TT-TTAATT-AA-G-TAAACA-----ATA-AAAA--A---AAAA---A-------CAC--CAATAC----TTGTATATA-A-TGAACG-TCACAG---GTGTTAT-GAT---A-actttgaaatgccacatggagctttattaaaacaccgaatatatatcaaaatggcattgaaattttaatgtgcacttgcagcatagaatttgggactcaaacttcatttttaattaagtaaacaataaaaaaaaaaacaccaatacttgtatataatgaacgtcacaggtgttatgata
gi|9 : taagaataatttcaagtacgacttatcatttcaatgcataagtcgatcagagtttttccctagtcgcaagtttatgtccagttcatataattttagagtaccgtagatgctatcttcgattgatacgaagctagtaagtggcatatatataAAAA---TTGCTTT------TCCTT-ACA------------ATCATC-GGAC-ATGTTT--AT-C-ATA---AA---GTCAATTCATACG-GCC-GATCA------TT-----------CTC-------TTGC----------GTAAGAATAATTTC--AAGTACG-AC-------------------ATA----TCA-TT--TAA-GA-----A-CGA---TGTCAGAGTTT-----------------------------TTCCGGA-GT-TGTA----A-GTCTGTGTATA-TA-A-A-TAT------AATTTTAGAGTACTGCAGATGC------TCTC---TTTGA-T-T-----GAT
gi|9 : -T-----AATTTTAG--AGTACTGCAGATGCTCTCTTTGATT-GATAC-GAAGCTAGTAA-ATG--GCATAT-----------------------ACAC-AAAGTTA--AA--CA-TGATTT-TG-T-------GGGGG--GTTTTCCCTCTAAAA-GTT------------------------------CGGCTT-AT--AA--A-CACC--GAC--TATA--TC-AAAAT--GG--C-ATTGGAA--TTTT--Aacgaagctagtaaatggcatatacacaaagttaaacatgattttgtggggggttttccctctaaaagttcggcttataaacaccgactatatcaaaatggcattggaattttagggatac