lowQualScore : 111111111111111111111
lowQualScore : 3333333333 111111 000000000000000000000 11 222222222222 1111111 111111 111 44444444444444444 2222222222222 1 1111 11111111 222222222 111 11111 1 44444444444444444444 111111 22222222 11111111 22222 44444444444444444444 11111 33333 1111111111 1 2222222222 11111 11111 111111 111
lowQualScore : 2222222222 55 1 2 222222 4 3 4 4 9 5 4 0 4 1 5 1 222222222222222222222 3 8 66 2 00 1 888888888888 4 7 4 4444444 66 555555 44 66 444 4 55555555555555555 4 0 4 4444444444444 3 3 7 3 4 8 4 777 3 5 3 5 5 6 2222 77 99999999 222222222 000 5 88888 3 5 1 33333333333333333333 3 444444 1 66666666 77777777 1 88888 22222222222222222222 44444 77777 0 8 8 0000000000 0 55 4444444444 2 66666 5 666 2 66666 333333 77 1 111 5 0
lowQualScore : .......... .. . . ...... . . . . . . . . . . . . ..................... . . .. . .. . ............ . . . ....... .. ...... .. .. ... . ................. . . . ............. . . . . . . . ... . . . . . . .... .. ........ ......... ... . ..... . . . .................... . ...... . ........ ........ . ..... .................... ..... ..... . . . .......... . .. .......... . ..... . ... . ..... ...... .. . ... . .
lowQualScore : 7777777777 00 0 5 333333 4 7 4 4 8 2 4 3 4 1 2 4 333333333333333333333 4 0 77 0 99 7 888888888888 4 0 4 6666666 11 666666 33 11 444 4 00000000000000000 4 9 0 3333333333333 6 6 0 3 4 9 4 888 7 0 2 0 0 0 0000 99 00000000 999999999 000 7 44444 1 7 4 44444444444444444444 0 666666 7 99999999 44444444 6 66666 66666666666666666666 33333 22222 4 9 9 2222222222 8 22 0000000000 0 11111 7 444 0 88888 111111 99 1 777 0 2
consensus : CGTGTACAACCGTT---------ACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGNAAT-CCCCGC-TTCGATTTCGACCGGAAAGTA-NGTCACGGT-TG---CGGTTTTTTCTTGCATTTNTAACCATTACT-TTTACAAAAG-ATAT-----A-TCNCAC-GGAACAAT-ACGATAAC-----CAAG--GTA----A-ATCTACATCAGCAGTTTG--TCT--GGATTA-ACC------T--------TCT-AGTATGGCC-AAACACTTC---G--ACA---ACAA-TTT-GCAGAGTGGAACA-TTTTCGCT-GT-G---TCGGTGACAAAAACATTGCATTATAGAATAA-TTANG-CAGC-AAAC---NTTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------AATACTCG--TGTACGGAATGCATG----CGGTCGATTCGT-G------TCAACGTTG------CAAAAGTAACG-----GAGGGG-GA------GT---------CGAT-----TTTCGGCAAA--GATTCAGAT-GG-GGGAG---T-CG---CAAAAT-AAGTGTTGACA-TCCTCTAAATGTTT----GAT-AAAATG-ATATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TCGTT---TACACAGAATT
Reference ( gi|5 ) : CGTGTACAACCGTT---------GCTTTGGGAGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGAAGTCGGAAAT-CCTCGC-TTCGATTTCAGCCGGAAAGTA-TGTCATGGTTTGGTTTGGTTTTTTTTTGCATTTATAACCATTACT-TTTACAAAAA-ATGT-----T-TCTCGC-GGAATAAT-ACGATAAT-----CAAG--GTA----A-ATCCACATCAGCAGTTTG--TCA--GGATTA-ACC------C--------TGT-AGTATGGTC-AAACACTTC---A--ACA---ACAA-TTT-GCATAGTGTAACA-TTTTCGCT-GT-G---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AGAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----TTCAAGAT-TTG-GAAT---------AAT-CTCG--TGTACGGAATGCATG----CAGTCGATTCGT-T------TCAATGTTA------CAAAAGTAACG-----GAGGGGCGA------GT---------CGAT-----TTTCAGC--A--GATTCAGAT-GG-GGGAG---T-CG---CATAAT-AATTGCTGACATTCCTCTGAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TTGTT---TACACAGAATTAA
gi|4 : CGTGTACAACCGTT---------ACTTTGG-------------------------GGGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGAAAT-CCTCGC-TTCGATTTCGACCGGAAAGTA-C----CGGTATGTCACGGTTTTTTCTTGCATTTAAAACCATTACA-TTTACAAAAG-ATAT-----A-TCTCAC-GGAACAAT-ACGATAAC-----CAAG--GTA----C-ATCTACATCAGCAGTTTG--TCT--GGATTA-ACC------T--------TCT-AGTGTGGCC-ACACACTTC---A--ACA---ACAA-CTT-GCAGAGTGCAACA-TTTTCGCT-GT-G---TCGGTGACAAAAACATAGCATTATAGGATAAATTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACATTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------ATA-CTCG--TGTACGGATTGCATG----CGGTTGATTTGT-T------TCAATGTTA------CAAAAGTAACG-----GAGGGGGGA------GT---------CGAT-----TTTCAGC--AAAGGTGCAGATAGG-GGGAG---T-CG---CATAA---------------CCTCTGAATGTTT----GAT-AAAATG-ACATACACATAT--T--TTGTACA-A----AAGCATCAGTT--TTATT---TACACAGAATT
gi|3 : acCGTGTATAACCGTT---------ACATTGAGAGAGTCGCTAAAAAT--AA-CG-GGGGAGTCG-CTCTCAAT-GCCATTGGGAGTCGGAAAT-CCTCGC-TTCGATTTCAGCCGGAAGGCA-GGTCAC----TGATTT---TTTTTTTTGCATTTATGACCATTGTT-TTAACAAACG-ATAT-----A-CCGCAC-GGAACAAT-ACGATAATTTAATCGAG--GTA----C-ATCTACATCAGCAGGTTT--TCT--GGATTA-ACC------C--------TCT-AGTATGGCC-AAACAC-----------------AA-TTT-GCAGAATGGAACA-TTTTTGCT-GT------CGGTGACAAATACATTGCATTATAGAATAA-TTATG-CAGC-AAAT---CTTGATAGTAAGCAA--TCCAAACGTTTCA-T-----ATTTTATTGTTT---------TTTAT---TGTTTA-ACA----ATCAGTAT-TTG-GAA----------AATACTAA--TGTACAGATTGTATG----CAGTCGATTCGT-G------ACAATGTTG------CAAATGTAACGAAAAAGGGGGGGGG------GG---------CGAT-----TTTTGGCAAA--AATTCAGAA-GG-AGGTG---TGTGTAACAAAATAAAGCGTTGGCA-TATTTTAAGTGTTT-----ATGAAAATG-ATATAAATATAT--TGATTGTATG-T----AAACATCAGTT--TCGTT---TACAGAGAAttaaaagtcatgactagaagaaagtnnnnnnnnnnnnnnnnnnnnnnnnnagtaatctttgtggctccatcgacccaagagtaggaaagtacaaa
gi|2 : acCGTGTACAACCGTT---------ACTTAGGGA-------------------------GAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGAAAT-TCTCGC-TTCGATTTCGACCGGAAAGTA-TGTCACGGTTT----TG------TCTTGCATTTATAACCATTACT-TTTACAAAAG-ATGT-----A-TCTCAC-GGAACAGT-ACGACAAC-----CAAG--GTA----A-ATCTACATCAGCAGTTTG--TCT--GGATTA-ACC------T--------TCT-ACTATGATC-AAACACTTC---A--ACA---ACAA-TTT-GCATGGTGTAACA-TTTTCGCT-GT-G---ACGGTGACAAACACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTGTT-----TTTTCATTGTTC---------TTCNN---NNNNNN-NNN----NNNNNNNN-NNN-NNNTACACAGTGAAATACT----TGTACGGAA-GCATG----CGGT--ATT-GT-T------CAGATTTTA------TCAAAG-AACG-----GAGGGG-GA------GGGGGGGAGAACGATTAATATTTTAGCA-A--AAGTC-GAT-GG-GG--A---T-CG---CATAAT-AA-TG-TGA-A---CCCTG-ATG-------GAG-AGAA-G-ACAT-AACATA---A--TTGTAC--A----AAGCATCAGTTAATTGTT---TACA---AATTatgattagagaaaggcatacaccatggcttcatttattcgttacagaggaaatataaaaaataggtcatacaa
gi|9 : acCGTGTACAACTGTT---------ACTTTGGGGGAATCGCTAAAAAAGAAA-CGTGGAGAGTCG-CTTTCAAC-GCCAGGGAGAGTCAGAAATCCCTCGCTTTCGATTTCGACTGGAAAGTATTGTCA----------AGGTTTTTTCTTGCATTT-TAACCATTACTCTTTACAAAAAGATGT-----A-TCTAAC-GGAACAATAACGACAAC-----CAAG--GT-----A-ATCTACATCAGCAGTTTG--TCT--GGATTA-ACC------T--------TCTAAGTATGGCCAAAACACTTT---C--ACGC--ACAATTTT-GCAGAGTGCAACA-TTTTCGCTGGTGG---TCGGTGACAAAAACATTGCAGTATAGGATAA-TTAAG-CAGC-AAAC---ATTGATTTTAAGTAA--TCCAAATGTTTTG-A-----TTTTTATttaaaagtcagacccagaaaagcaatcattgtgccatcgtactccatagagaaggaagtacaaaatatcaataaaatatgatttgattaccctcaaaaaatcccgttgaattgtaaaaatttcgacagcgaaagctaaccccgtatgattttttatgtgcattgaataaagacgtccctgaaggaccccagcgggctacgtgtacgaatcatagaaattagaacatgaaacaatgtacaggtagaacagtgatgagatttgataatccaaacatgaaccggtcatgaatggaatttgtactcaatttgtgtgtttggttacatgaaaataacaaacgatacattcggttcttgctgtttttgaatcaaaataccgaaagttttctatcccatgtcagataaaca
gi|15 : acCGTGCACAACTGTTTAAAGTGTTACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GTGGAGTCG-CTTTTAAC-GCCAGGGG-AGTCAATAAT-CTCAGA-TTGAATTTaacattagtgttt
gi|24 : cCGTGTACAACCTTT---------ACTTTGGGGGAGTCCCTAAAAAG--AACCT-GGAGAGTTG-CTTTCAAC-GCCAGGAAGAG-----------------TCGATTTCGACCGGAAAGTA-TGTCACGGTTttttttctaaccattacatctacaaaagatatgtcgcacagaacaatgcgatagccaaggtacatatacatcagcagtttgtattggattaagcttctagtatggtcaaatatttcggcacaatttgcagaattcaaaatc
gi|13 : acAAG--AA-CG-GA--------CTT---AC-GCCAGGAGGATTCGATAAT-CTCCGC-TTGGAAATCGACAGCAAAGTA-GGTTACCATTTG---CG--------TTGCCTCTCTAACCATTACT-TTTGCAAAAG-ATATATAGGC-TATCAC-ACGACAAT-AAGATACT------AAG--GTA----A--TCT-CATCAGCAGTTTG--TCT--GGATTA-ACC------TTTCTTAAATTT-AGTATAGCC-AAACACTTC---G--A-A---ACCA-TTC-G
gi|1 : G-GGGGAGTCG-ATTTTAAC-GCCAGGGGGAGTCGGTAGT-TTCCGC-TTGGATATCCGCAGTACAGTA-GATTACCGTAT---------TTTTCTTGCGTTTCTAACCATCACT-TT---------------------------------AT-GCGATAGC-----CAAG--GTACTGTACATATACATCAGCAGTTTGCATTA--GG-TTA-AGCTTCTTAC--------TAT-AGTATGGTC-AAATATTTC---T--GCA----CAA-TTC-GCAGAATGGAAAA-TATTTGCT-TT-G---TCGATAACAAAAACATTGCATTAAAGAATAA-ATGCG-CAGC-AAAT---TTTGATAGTACGTAA--TCCAAATGTTTTA-------CTTTAA-----C---------TTCAT---TGTTTA-ACA----CCCAGGAT-TTT-GAAA---------ATT-TTCGTTTATACGAAATACATG----GGGTCGATACGTGTCAAATGTCAATGTCAATTTAGCAAAAGTAACAAAGGTGAGGGGTGGGTGGGTGT---------CGAT-----TTGCGGTAAA--GATTCTGAT-GG-GGGGGGGAT-CG---CAAAAT-AAGTGTTGATAATCCTCTAAATGTTT----AAT-AAAATG-------GCATAT--T-----TAAA-A----AAAAATCAGTT--TCGTT---TACAaaaaaaaaattgcatgtgaaaaatagcaatataggttatcaaattattctatatgctaaaaaaaattttatag
gi|6 : attgtgcacaaccattacttttG-GGAGGGTCAACTTTCAGCTGCCAGGGGGAGTTGATAAC-CTCCGC-GTGGAATTCGGCAGCAAAGTA------------GGTTGCGTGTTTTCTTGCATTTGTAATAATTACT-TTTATACAAA-AGAC-----A-TCGCAC-GGCACAAT-ACAATAAC-----CAGG--ATA----C-ATTTATAACAGAAGTTTG--CCA--GGATAA-ATC------T--------TTT-AG----------AC-TTTC---G--GCT----CTA-CTT-GCAGAATAGCACA-TTTTCGCT-GT-G---TTGAAGACAAAGATATTGAACTACAGAATAA-TTAAA-CATA-AAAA---CTCGTTAGTAGGTAA--TCCAAATGTTTTA-T-----TTTTCATTGATC---------TTCAT---TGTTTA-ACA----ATCAGGAT-TTG-GAA----------AACACTCA--TTTACGGAATGCATG----GGGTCGATTTGT-G------TCAACATTG------TAAAAGTAATG--------------------GT---------CGAA-----ATTCGGTCAA--GATTCAGAT-AG-GAGG------------------AATTGC-GATA--CAAATAAATGTTT----AAG-GAAATGCATATAAACAGTT--TCATTACACA-A----AAataacatatatatatatatatattcaaagccatgacttgaaaaaaagcattctttgtggctccattgacctaacctattaagagaagtaaaatatataatagtccattcaagatcgagagaaaatgaattgtttgttaatctattcgattcaacaaaaaaatgtcttctcccaacaccaacccccctccccaaaacccccccaaaagttgaaagcccgcaagatatttccatgtgatcgaacaaaaggatcacctttgttgaaatgcacccccaaaattaaggttatgtgtttgcgaattatcgaacttggtaacacagaagaaaaattagaataccatgatttaatatggtatagctgagaagatgaaaatccaaaaacatcgataccagttagttaaactcgataattgcgaataaagtattacaattttttagtcttgtacatgtagcagatgaaaaataccctaagttaacgttgacatttcgttcttgttttcgaatgcaagaaactaagaaattttggaagaaaggatacaaattgctaaagttcattcaaaattccttgatttcatgggtgatccaaaaattgcgcgccaaattaaagatgtgcatggttgttactggaggatgaattctaacggaatctttacaaataaactttgtagtccctagctttaatgtttaattcaagtaatgtcgaccttaaaacatactaaaccagaagtat
gi|15 : TTTTTT---TTTCTAACCATTACA-TCTACAAAAG-ATAT-----G-TCGCAC-AGAACAAT-GCGATAGC-----CAAG--GTA----C-ATATACATCAGCAGTTTG--T-ATTGGATTA-AGC------T--------TCT-AGTATGGTC-AAATATTTC---G--GC----ACAA-TTT-GCAttttcaaagtcctcacatgactagaaagtagcaatcactatggctccatcgatcttagagaggaaatacacaa
gi|10 : ccgtgcacaactgtttaaagtgttactttgggggagtcgctaaaaagaacggtggagtcgcttttaacgccaggggagtcaataatctcagattgaaAACCATTGC-----AAAGAAATATGT-----TGTCAAACAGGAACAAT-ACCATA-T-----CGAACCATA----A-GTACATATCGAGAATTTG--CCT--GCACCATACCAAT---C--------GCT-AGTATAAC---AACACTTCCTAA--GCA---CCCG-TTTTGCATAATAGAACATTTTTCGCTAGT-GCGCTCGTTGACAAA----------TACCGAA-AA-TTACGCCAACAAAACCAGATT-ATGCTAAGTAAATCCCCAATGTTTTT-TATATACTTTCATTGTCCCTTCTATCATTCATATATTTTTATACAAAACTTCAGGATATTGCGA-----------AAT-TCCG--TTTACGGAgaattcaaaatc
gi|25 : gcggggggataacctccatcgtttggaattcccagtaagtatgggcatattatccttgaaatttccgATGGTC-AAACACTTT---A--ACA---ACAA-TTT-GCATGGTGAAACA-TTTTCGCT-GT-G---TCGGTGAC-ACAGCATTACATTATAGAATAA-TTCCG-CAGC-AAAC---CTTta
gi|28 : ACACTCT---AGTACAGGCACGA-TTT-GCAGAATG-GACA-TTTTCGCT-GT-G---TCCGTAACAAAA
gi|19 : atGTTTTA-T-----TTTTCATTGTTC---------TTCAT---AGTTTA-ACA----CTCGAGAT-TTGAGAAT---------ACT-CTC-----TAGGGAATGCATG----AAATCGATTCGT-G------TCATTGT-------------ATAACG-----GAGGGG-AA------GT---------CGCT-----TGTCGGTAAA--GATTCAGAT-AGCGGGAG---T-TG---CAAAAT-AAGTGTTGACATTCCTCTAAATGTT
gi|11 : tGGAATGCATGGGCTCGATCGATCCAT-G------CCAACATTG------CAAACGTAAAG-----GAGGGGAGA------GT---------CG
gi|27 : tactcctggtttAT-----TTTCATT--AAAGATTCAGACAGG-GGGAG---T-GG---CAAAAC-Acgaaataagtgttgacaatcctctaaatgtttttaaaacaaaatgatataaatatatcttatatacattgtaaacaacagttaagttaaatacacaaactttcaaagccatgactaggcaaacttaatatagaatagttcattcacagattaagagaaaatggggtacagagttaaattaatcaagattgaaattaacgtttcctctggaatgaaatcaaatgttatcaacttatacaaagtacatgtac
gi|22 : --A--GATTCAGAT-TATAAGAG---A-TG---CAGAAT-AAGTGTCGTCATTTCTCTAAAT-CTT----GAT-AAAATG-ATATAAACATCTAAT--TTGTATA-T----AAATATCAGTT--TCAAT---TACACtctaaatgtgtacagtatgtacgcattttcatac
gi|11 : gaaattcggtaaGAG-GG-GAGAG---T-CG---CGAAAT-AAGTGTTGACAATCCTCTAAATGTTTTTAAAAC-AAAATG-ATATAAATATAT--C--TTATATACATTGTAAACAACAGTT--AAGTTAAATACACAAACTTattgatatttagaaatgac
gi|29 : tactcctggtttggaatgcatgggctcgatcgatccatgccaacattgcaaacgtaaagTGAACATAT--T--TTGTACA-A----AAGCATCAGTT--TTGtcaaagccatgactaggcaaacttaatatagaatagttcattcacagattaagagaaaatggggtacagagttaaattaatcaagattgaaattaacgtttcctctggaatgaaatcaaatgttatcaacttatacaaagtacatgtac
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): AAATCTGAAAACCCAACAGGATATTTCCATGTAACGTTGAAATGAACCCCCTAAATACTAAGTGTTGACAAATTATCGAACATGAAACACTGAAGAAAAATAGAATATCATGGTGTATGTACAGCTGATTAAAAAAAACATTGATACCGGTTAATGAGACCTTCCGAAAAGCTCGTTAAACACGACAATTGCAAATATTTGTGGATCTTGTTGCAGATGAAAAGTATCCAAACGATAATATTCGTTTTGGTTGTTTTTGAAATTGGGAATTACCCGTCAAATTGTACTATGTGCAAGAAACTAAGAGATTTTGGAAGATAGGATACAAATAATTTCATGGGTGATAAAAAAGCGTATCAAATTAAAGATGGGGTTGCTGTTAGAAGATGAACCCTAACTGAATCTTTACTAATAAACGTTGTTATCCATAACTTTAATGTTTGAT
Unaligned ( gi|8 ): TTGTGAATGAACCCTAAGAATACTAAGTGTTGACAAATTAATCGAAACATGAAACACTGAAGAAAAAATAGAATATCATGGTGTATGTACAGCTTGATTAAAAAAAACACTTGATACCGGTTAATGAGACCCTTCCGAAAAGCTCGTTAAATCACGACAATTGCAAATATTTGTGGATCTTGTTGCAGATGAAAAGTATCCAAACGATAATTTTCGTTTTGGTGTTTTTGAAATTGGGAATTACCCGCTCAAATTGTACTTATGTGCAAGAAACTAAGAGATATTTGAAGAGATAGGATACAAATTAATTTTCATGGGTGATAAAAAAGCGTATCAATATTAAAGATGGGGTTGCTGTTAGGAAGTATGAACCACTAACGTTGAATTCTTTACTTAATTATAACTGTTATCCATAACTTTAATGTTTGAT
Unaligned ( gi|12 ): AATGTTGACGAATTATCGAACATGCAAGCAAAATAGAATATAATAATTTATTTACAATGTACATCTAATGAGAAAATTAAAATTCAAAATCATTGATACCGGTAATAATTGATGACAATCCGAAAAGCTAGTTAAATATATTGCTTATAGATTATTAACGTTTTTGTGTCTGGTTGCAGATGGAAAAATATCCTAAAAATAACACTTCCTTCTTGATGTTTCTAGATAGGATTTGGAAATACCTGGTGAAGTGTGCTAGATACAAGAGACTCTGAGATTTTGGAAAATAGGGTACAAATTACTTC
Unaligned ( gi|14 ): ATCGTTGAAAAGCCCACAGCAGATTTCCATATAATTCAAAGACCCTACCGTTGAAAAGAACCCACAAAGTACATGTTGACATATATTCCACACAAAAGCTACACAGAATGCCTGACTTAAATGTGCAACCGATAAATCATCTAGATTCTGCAATACCGGTACTGAATTCTTTCAATATCTTTTAGGAAAGCTAAGTAAAAACGACAAAACGATTGTAAAGAGTATCGCATTTGTGCATCTTTGTAGATTAAATATCCAAAAAAT
Unaligned ( gi|16 ): AACGCTGAAAGCCCACAGGGTATTTTCATATAATTCAACAAGCGGATCTCCACCGTTGAAAATAACTCCCATAAAACACGTTTTCGCAGGTTATCGAACATGCAACACAAAAGATACACAAAAATACCGTGTACAGCTGATAATAACACTTAATTTCAAGACGAAAATTCAACATTACCGGTAACTGAGGACCTTCTTTCAAAAGGTTAGAAAAACACGAT
Unaligned ( gi|17 ): CTCTGGCTCCATCTCTCCATCATGTACAGAAGAACAATACAGAATAGGCCATACAAGAGCAAGAGAAAATGGACTGCTTATTATAATACGGGAGTTCTGAGATCCGTTTTTAAAACGACCGATTCACTCTAAAAGAAAAAAAACCGCTGAAAGTCCACAGGATATTTCCATATAAATCAACAAGAAAATCTCACCGATGAAAAGAACCCCCGAAA
Unaligned ( gi|18 ): AATAGGAATACCATGATATACAATGTACCGGTATGTACAGCTAATGAGAATATTGAAAATCCAAAAACAATTGAATACCGGCCAAATGTACTTCTAATTTTTGTGTTCTTTTAGGCAAATATGAAAAATACCCAAACGATGAACAATTTGTTCTTGCTGTTTTTGAAATATTACATAGAAATTGAC
Unaligned ( gi|20 ): AAAAGCTAAAAGTCCGTATGATATTTTTATGTCATTGAATAAGATGGACTTTTTCAGTTGTGAAATGAGAAACCCCACCACCATCCACCTCTTGAGGCTACATGATAGCGTGTTGACGAATCATCGAACATGCAAAC
Unaligned ( gi|21 ): CATTCAAAATTCCTTTATTCCATGGGTGATCCAAAAAATGCGTGTCTAAGGATGAATCTAACTGAATCTTTAAAGGTAAACTTTAATTTTTAATGTAAAAAATGTTGACATTAAAGAAATACTACAACCAGAAGTAT
Unaligned ( gi|23 ): TGTCTTGTAGCAATTGAAAAATACCCAAACAATAACAATTCGTTCTTGCTGTTTTTGAATCAGAAAATACTCGTCAAAGTGTTCTACATCGGTCATGAAAACAG
Unaligned ( gi|26 ): TAAAGACGAAAAATACAAAAATAGGCCGTGCAAGATCAAAAGAAAATGAACTGCTAATTCATTCGATCCATCTTTTTAAAAAAACC
Alignments
lowQualScore : 222222222 11111111 66666666666666666666666666 111111111111111 11111 111111 11111111 111111 111111111 111 11111 222222222 11111 3333333333 1111 1111 22222222222 111111 4444444444444444444444444444444444444444 11111 1 11111 11111 11111 111111 111
lowQualScore : 000000000 0 00000000 44 4 3 4 4 2 444 666 55 22 0 33333333333333333333333333 0 4 4 4 55 0 55 4 666666666666666 2 4 4 8888 00000 333333 8 4 55 44444444 4 111111 4 3 333333333 3 3 1 4 4 4 111 2 4 1 4 4 8888 66 4 11111 000000000 888 5 22222 5 5 5555555555 2 4 0000 0000 0 2 11111111111 444444 00 0 3333333333333333333333333333333333333333 11111 0 2 8 777 4 777 2 8888 4 5 2 77777 4 0 22222 5 5 0 33333 000000 66 1 000 2
lowQualScore : ......... . ........ .. . . . . . ... ... .. .. . .......................... . . . . .. . .. . ............... . . . .... ..... ...... . . .. ........ . ...... . . ......... . . . . . . ... . . . . . .... .. . ..... ......... ... . ..... . . .......... . . .... .... . . ........... ...... .. . ........................................ ..... . . . ... . ... . .... . . . ..... . . ..... . . . ..... ...... .. . ... .
lowQualScore : 000000000 2 11111111 66 0 9 0 0 3 444 444 00 88 5 66666666666666666666666666 7 0 9 0 11 9 55 0 111111111111111 4 0 0 5555 00000 111111 0 0 55 55555555 0 555555 0 6 888888888 3 3 6 0 0 0 000 4 4 0 4 4 8888 99 4 11111 000000000 888 0 22222 0 0 4444444444 2 7 7777 6666 2 5 88888888888 444444 44 1 9999999999999999999999999999999999999999 11111 9 0 0 000 0 000 6 5555 0 7 2 99999 4 1 99999 0 0 8 99999 777777 99 1 000 5
consensus : CGTGTACAACCGTT---------ACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGNAATCCC-C---GCTT-CGATTTCGGCCGGAAAGTAN-GTCAC-GGT-T--G---C--G-TTTTTTCTTGCA-TTTNT-AACCATTACT-TTTA--CAAAA-GATA-------TAT-----CNCAC-GGAACAATA-CGAT----AAC-----CAAGGTA----A-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTATGGCCAAA-CACTTC---GACA-ACAA-TTT-GCAGAGTGGAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------AATACTCGT--G-TACGGAATGCATG----CGGTCGATTCGTGTCA-A-------CGTT------GCAAAAGTAAC------GGAGG------------GG-G-AGT---------CGAT-----TTTCGGTAAAGATTCAGAT-GG-GGGAG---T-CG---CAAAA----T-AAGTGTTGAC-A-TC-CTCTAAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TCGTT---TACACAGAATT
Reference ( family-2479 ) : CGTGTACAACCGTT---------ACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGNAATCCC-C---GCTT-CGATTTCGACCGGAAAGTAN-GTCAC-GGT-T--G---C--GGTTTTTTCTTGCA-TTTNT-AACCATTACT-TTTA--CAAAA-GATA-------TAT-----CNCAC-GGAACAATA-CGAT----AAC-----CAAGGTA----A-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTATGGCCAAA-CACTTC---GACA-ACAA-TTT-GCAGAGTGGAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTANG-CAGC-AAAC---NTTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------AATACTCGT--G-TACGGAATGCATG----CGGTCGATTCGTGTCA-A-------CGTT------GCAAAAGTAAC------GGAGG------------GG-G-AGT---------CGAT-----TTTCGGCAAAGATTCAGAT-GG-GGGAG---T-CG---CAAAA----T-AAGTGTTGAC-A-TC-CTCTAAATGTTT----GAT-AAAATG-ATATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TCGTT---TACACAGAATT
gi|1 : GTGCACAACCATT---------ACTTT-----------------------TG-GGGGAGTCG-ATTTTAAC-GCCAGGGGGAGTCGGTAGTTTC-C---GCTT-GGATATCCGCAGTACAGTAG-ATTAC------------C--GTATTTTTCTTGCG-TTTCT-AACCATCACT-TT-----------------------------------------ATG-CGAT----AGC-----CAAGGTACTGTACATATACATCAGCAGTTTGCATTAGGTTA-AGC--T--------T-CTTACTATA-GTATGGTCAAA-TATTTC---TGCA--CAA-TTC-GCAGAATGGAAAA-TATTTGCT-T-TG---TCGATAACAAAAACATTGCATTAAAGAATAA-ATGCG-CAGC-AAAT---TTTGATAGTACGTAA--TCCAAATGTTTTA-C-----TTT-AA-----C---------TTCAT---TGTTTA-ACA----CCCAGGAT-TTT-GAA----------AATTTTCGTTTA-TACGAAATACATG----GGGTCGATACGTGTCA-AATGTCAATGTCAATTTAGCAAAAGTAAC------AAAGGTGAGGGGTGGGTGG-G-TGT---------CGAT-----TTGCGGTAAAGATTCTGAT-GG-GGGGGGGAT-CG---CAAAA----T-AAGTGTTGATAA-TC-CTCTAAATGTTT----AAT-AAAATG-------GCATAT--T-----TAAA-A----AAAAATCAGTT--TCGTT---TACA
gi|10 : attCGGGGGGA-----TAACCTC-CATCGTTT-GGAATTC--CC----AGTAA-GT-AT-GG-----G---C--ATATTATCCTTGAAATTTCCGAACCATTGC----------AAA-GAAA-------TATGTTGTCAAACAGGAACAATA-CCATATCGAAC-----CA---TA----A-GTACATATCGAGAATTTGC-CTGCACCATACCAAT--------CGCT------A-GTATAAC--AA-CACTTCCTAAGCA-CCCGTTTT-GCATAATAGAACATTTTTCGCTAG-TGCGCTCGTTGACAAA----------TACCGAA-AA-TTACGCCAACAAAACCAGATT-ATGCTAAGTAAATCCCCAATGTTTTT-TATATACTTTCATTGTCCCTTCTATCATTCATATATTTTTATACAAAACTTCAGGATATTGCGA-----------AATTC-CGT--T-TACGGAataacatatatatatatatatattcaaagccatgacttgaaaaaaagcattctttgtggctccattgacctaacctattaagagaagtaaaatatataatagtccattcaagatcgagagaaaatgaattgtttgttaatctattcgattcaacaaaaaaatgtcttctcccaacaccaacccccctccccaaaacccccccaaaagttgaaagcccgcaagatatttccatgtgatcgaacaaaaggatcacctttgttgaaatgcacccccaaaattaaggttatgtgtttgcgaattatcgaacttggtaacacagaagaaaaattagaataccatgatttaatatggtatagctgagaagatgaaaatccaaaaacatcgataccagttagttaaactcgataattgcgaataaagtattacaattttttagtcttgtacatgtagcagatgaaaaataccctaagttaacgttgacatttcgttcttgttttcgaatgcaagaaactaagaaattttggaagaaaggatacaaattgctaaagttcattcaaaattccttgatttcatgggtgatccaaaaattgcgcgccaaattaaagatgtgcatggttgttactggaggatgaattctaacggaatctttacaaataaactttgtagtccctagctttaatgtttaattcaagtaatgtcgaccttaaaacatactaaaccagaagtat
gi|11 : gTACTCCT--GGTTTGGAATGCATGGGCTCGATCGATCCATGCCA-A-------CATT------GCAA-----AC------G------------------------------------------------TAAAG-----GAG-GG-GAGAG---T-CG---CGAAA----T-AAGTGTTGACAA-TC-CTCTAAATGTTTTTAAAAC-AAAATG-ATATAAATATAT--C--TTATATACATTGTAAACAACAGTT--AAGTTAAATACACAAACTTta
gi|13 : AAG--AA-CG-GA--------CTT---AC-GCCAGGAGGATTCGATAATCTC-C---GCTT-GGAAATCGACAGCAAAGTAG-GTTAC-CAT-TT-G---C--G--------TTGCC-TCTCT-AACCATTACT-TTTG--CAAAA-GATATATAGGCTAT-----CACAC-G--ACAATA-AGAT-----AC-----TAAGGT-----A-ATCT-CATCAGCAGTTTGT-CTGGATTA-ACC--TTTCTTAAAT-TT------A-GTATAGCCAAA-CACTTC---GA-A-ACCA-TTC-Gtcaaagccatgactaggcaaacttaatatagaatagttcattcacagattaagagaaaatggggtacagagttaaattaatcaagattgaaattaacgtttcctctggaatgaaatcaaatgttatcaacttatacaaagtacatgtac
gi|15 : CGTGCACAACTGTTTAAAGTGTTACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GTGGAGTCG-CTTTTAAC-GCCAGGGG-AGTCAATAAT---------CTC-AGATT-------GAA----------------------------TTTTTT-------TTTCT-AACCATTACA-TCTA--CAAAA-GATA-------TGT-----CGCAC-AGAACAATG-CGAT----AGC-----CAAGGTA----C-ATATACATCAGCAGTTTGTATTGGATTA-AGC--T--------T-CT------A-GTATGGTCAAA-TATTTC---GGC--ACAA-TTT-GCAGAATaaaaaaaaattgcatgtgaaaaatagcaatataggttatcaaattattctatatgctaaaaaaaattttatag
gi|19 : cGTTTTA-T-----TTTTCATTGTTC---------TTCAT---AGTTTA-ACA----CTCGAGAT-TTG---AG---------AATACTC-T--C-TAGGGAATGCATG----AAATCGATTCGTGTCA-----------TT------GTA----TAAC------GGAGG------------GG-A-AGT---------CGCT-----TGTCGGTAAAGATTCAGAT-AGCGGGAG---T-TG---CAAAA----T-AAGTGTTGAC-ATTC-CTCTAAATGTTtcaaaatc
gi|2 : tCGTGTACAACCGTT---------ACTT----------------------A--G-GGAGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGAAATTCT-C---GCTT-CGATTTCGACCGGAAAGTAT-GTCAC-GGT-T-------------TTGTCTTGCA-TTTAT-AACCATTACT-TTTA--CAAAA-GATG-------TAT-----CTCAC-GGAACAGTA-CGAC----AAC-----CAAGGTA----A-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-CTATGATCAAA-CACTTC---AACA-ACAA-TTT-GCATGGTGTAACA-TTTTCGCT-G-TG---ACGGTGACAAACACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTGTT-----TTTTCATTGTTC---------TTCNN---NNNNNN-NNN----NNNNNNNN-NNN-NNNTACACAGTGAAATACT--T--G-TACGGAA-GCATG----CGGT--ATT-GT-TCAGA-------TTTT------ATCAAAG-AAC------GGAGG------------GG-G-AGGGGGGGAGAACGATTAATATTTTAGCAAA-AGTC-GAT-GG-GG--A---T-CG---CATAA----T-AA-TG-TGA--A-CC-CT---GATG-------GAG-AGAA-G-ACAT-AACATA---A--TTGTAC--A----AAGCATCAGTTAATTGTT---TACA---AATT
gi|22 : acTTCGGTAAAGATTCAGAT-TATAAGAG---A-TG---CAGAA----T-AAGTGTCGTC-A-TTTCTCTAAAT-CTT----GAT-AAAATG-ATATAAACATCTAAT--TTGTATA-T----AAATATCAGTT--TCAAT---TACACttaaaagtcagacccagaaaagcaatcattgtgccatcgtactccatagagaaggaagtacaaaatatcaataaaatatgatttgattaccctcaaaaaatcccgttgaattgtaaaaatttcgacagcgaaagctaaccccgtatgattttttatgtgcattgaataaagacgtccctgaaggaccccagcgggctacgtgtacgaatcatagaaattagaacatgaaacaatgtacaggtagaacagtgatgagatttgataatccaaacatgaaccggtcatgaatggaatttgtactcaatttgtgtgtttggttacatgaaaataacaaacgatacattcggttcttgctgtttttgaatcaaaataccgaaagttttctatcccatgtcagataaaca
gi|24 : gaaaCGTGTACAACCTTT---------ACTTTGGGGGAGTCCCTAAAAAG--AACCT-GGAGAGTTG-CTTTCAAC-GCCAGGAAGAG-------------------T-CGATTTCGACCGGAAAGTAT-GTCAC-GGT-T--attgatatttagaaatgac
gi|25 : acATGGTCAAA-CACTTT---AACA-ACAA-TTT-GCATGGTGAAACA-TTTTCGCT-G-TG---TCGGTGAC-ACAGCATTACATTATAGAATAA-TTCCG-CAGC-AAAC---CTT
gi|27 : AT-----TTTCATTAAAGATTCAGACAGG-GGGAG---T-GG---CAAAACATCT-AAATGT
gi|28 : -ACGA-TTT-GCAGAATGGA-CA-TTTTCGCT-G-TG---TCCGTAACAAAAgtacagtatgtacgcattttcatac
gi|29 : atacactctagtacaggcTGAACATAT--T--TTGTACA-A----AAGCATCAGTT--TTG
gi|3 : CGTGTATAACCGTT---------ACATTGAGAGAGTCGCTAAAAAT--AA-CG-GGGGAGTCG-CTCTCAAT-GCCATTGGGAGTCGGAAATCCT-C---GCTT-CGATTTCAGCCGGAAGGCAG-GTCACTGAT-T-----------TTTTTTTTTGCA-TTTAT-GACCATTGTT-TTAA--CAAAC-GATA-------TAC-----CGCAC-GGAACAATA-CGAT----AATTTAATCGAGGTA----C-ATCTACATCAGCAGGTTTT-CTGGATTA-ACC--C--------T-CT------A-GTATGGCCAAA-CAC-------------AA-TTT-GCAGAATGGAACA-TTTTTGCT-G-T-----CGGTGACAAATACATTGCATTATAGAATAA-TTATG-CAGC-AAAT---CTTGATAGTAAGCAA--TCCAAACGTTTCA-T-----ATTTTATTGTTT---------TTTAT---TGTTTA-ACA----ATCAGTAT-TTG-GAA----------AATACTAAT--G-TACAGATTGTATG----CAGTCGATTCGTGACA-A-------TGTT------GCAAATGTAACGAAAAAGGGGG------------GG-G-GGG---------CGAT-----TTTTGGCAAAAATTCAGAA-GG-AGGTG---TGTGTAACAAAA----TAAAGCGTTGGC-A-TA-TTTTAAGTGTTT-----ATGAAAATG-ATATAAATATAT--TGATTGTATG-T----AAACATCAGTT--TCGTT---TACAGAGAA
gi|4 : acCGTGTACAACCGTT---------ACTTTGGGGGAGTCGCT--------------------------TTCAAC-GCCAGGGGGAGTCGGAAATCCT-C---GCTT-CGATTTCGACCGGAAAGTAC-----C-GGTAT--GTCAC--GGTTTTTTCTTGCA-TTTAA-AACCATTACA-TTTA--CAAAA-GATA-------TAT-----CTCAC-GGAACAATA-CGAT----AAC-----CAAGGTA----C-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTGTGGCCACA-CACTTC---AACA-ACAA-CTT-GCAGAGTGCAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATAGCATTATAGGATAAATTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACATTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------A-TACTCGT--G-TACGGATTGCATG----CGGTTGATTTGTTTCA-A-------TGTT------ACAAAAGTAAC------GGAGG------------GG-GGAGT---------CGAT-----TTTCAGCAAAGGTGCAGATAGG-GGGAG---T-CG---CA-------T-AA------------C-CTCTGAATGTTT----GAT-AAAATG-ACATACACATAT--T--TTGTACA-A----AAGCATCAGTT--TTATT---TACACAGAATTatgattagagaaaggcatacaccatggcttcatttattcgttacagaggaaatataaaaaataggtcatacaa
gi|5 : acCGTGTACAACCGTT---------GCTTTGGGAGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGAAGTCGGAAATCCT-C---GCTT-CGATTTCAGCCGGAAAGTAT-GTCAT-GGT-TTGG---TTTGGTTTTTTTTTGCA-TTTAT-AACCATTACT-TTTA--CAAAA-AATG-------TTT-----CTCGC-GGAATAATA-CGAT----AAT-----CAAGGTA----A-ATCCACATCAGCAGTTTGT-CAGGATTA-ACC--C--------T-GT------A-GTATGGTCAAA-CACTTC---AACA-ACAA-TTT-GCATAGTGTAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AGAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----TTCAAGAT-TTG-GAAT---------AAT-CTCGT--G-TACGGAATGCATG----CAGTCGATTCGTTTCA-A-------TGTT------ACAAAAGTAAC------GGAGG------------GGCG-AGT---------CGAT-----TTTCAGC--AGATTCAGAT-GG-GGGAG---T-CG---CATAA----T-AATTGCTGAC-ATTC-CTCTGAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TTGTT---TACACAGAATTttaaaagtcatgactagaagaaagtnnnnnnnnnnnnnnnnnnnnnnnnnagtaatctttgtggctccatcgacccaagagtaggaaagtacaaa
gi|6 : G-GGAGGGTCAACTTTCAGCTGCCAGGGGGAGTTGATAACCTC-C---GCGT-GGAATTCGGCAGCAAAGTA--------GGT-T--G---C--G-TGTTTTCTTGCA-TTTGT-AATAATTACT-TTTATACAAAA-GACA-------T-------CGCAC-GGCACAATA-CAAT----AAC-----CAGGATA----C-ATTTATAACAGAAGTTTGC-CAGGATAA-ATC--T--------T-TT------A-G---------A-C-TTTC---GGCT--CTA-CTT-GCAGAATAGCACA-TTTTCGCT-G-TG---TTGAAGACAAAGATATTGAACTACAGAATAA-TTAAA-CATA-AAAA---CTCGTTAGTAGGTAA--TCCAAATGTTTTA-T-----TTTTCATTGATC---------TTCAT---TGTTTA-ACA----ATCAGGAT-TTG-GAA----------AACACTCAT--T-TACGGAATGCATG----GGGTCGATTTGTGTCA-A-------CATT------GTAAAAGTAAT------G----------------------GT---------CGAA-----ATTCGGTCAAGATTCAGATAGG-AGGAA---T-TG---CGATA----C-AAA----------------TAAATGTTT----AAG-GAAATGCATATAAACAGTT--TCATTACACA-A----AAaa
gi|9 : CGTGTACAACTGTT---------ACTTTGGGGGAATCGCTAAAAAAGAAA-CGTGGAGAGTCG-CTTTCAAC-GCCAGGGAGAGTCAGAAATCCCTC---GCTTTCGATTTCGACTGGAAAGTATTGTCAA-GGT-T-------------TTTTCTTGCA-TTT-T-AACCATTACTCTTTA--CAAAAAGATG-------TAT-----CTAAC-GGAACAATAACGAC----AAC-----CAAGGTA----A--TCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------AAGTATGGCCAAAACACTTT---CACGCACAA-TTTTGCAGAGTGCAACA-TTTTCGCT-GGTGG--TCGGTGACAAAAACATTGCAGTATAGGATAA-TTAAG-CAGC-AAAC---ATTGATTTTAAGTAA--TCCAAATGTTTTG-A-----TTTTTATttttcaaagtcctcacatgactagaaagtagcaatcactatggctccatcgatcttagagaggaaatacacaa
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AAATCTGAAAACCCAACAGGATATTTCCATGTAACGTTGAAATGAACCCCCTAAATACTAAGTGTTGACAAATTATCGAACATGAAACACTGAAGAAAAATAGAATATCATGGTGTATGTACAGCTGATTAAAAAAAACATTGATACCGGTTAATGAGACCTTCCGAAAAGCTCGTTAAACACGACAATTGCAAATATTTGTGGATCTTGTTGCAGATGAAAAGTATCCAAACGATAATATTCGTTTTGGTTGTTTTTGAAATTGGGAATTACCCGTCAAATTGTACTATGTGCAAGAAACTAAGAGATTTTGGAAGATAGGATACAAATAATTTCATGGGTGATAAAAAAGCGTATCAAATTAAAGATGGGGTTGCTGTTAGAAGATGAACCCTAACTGAATCTTTACTAATAAACGTTGTTATCCATAACTTTAATGTTTGAT
Unaligned ( gi|8 ): TTGTGAATGAACCCTAAGAATACTAAGTGTTGACAAATTAATCGAAACATGAAACACTGAAGAAAAAATAGAATATCATGGTGTATGTACAGCTTGATTAAAAAAAACACTTGATACCGGTTAATGAGACCCTTCCGAAAAGCTCGTTAAATCACGACAATTGCAAATATTTGTGGATCTTGTTGCAGATGAAAAGTATCCAAACGATAATTTTCGTTTTGGTGTTTTTGAAATTGGGAATTACCCGCTCAAATTGTACTTATGTGCAAGAAACTAAGAGATATTTGAAGAGATAGGATACAAATTAATTTTCATGGGTGATAAAAAAGCGTATCAATATTAAAGATGGGGTTGCTGTTAGGAAGTATGAACCACTAACGTTGAATTCTTTACTTAATTATAACTGTTATCCATAACTTTAATGTTTGAT
Unaligned ( gi|12 ): AATGTTGACGAATTATCGAACATGCAAGCAAAATAGAATATAATAATTTATTTACAATGTACATCTAATGAGAAAATTAAAATTCAAAATCATTGATACCGGTAATAATTGATGACAATCCGAAAAGCTAGTTAAATATATTGCTTATAGATTATTAACGTTTTTGTGTCTGGTTGCAGATGGAAAAATATCCTAAAAATAACACTTCCTTCTTGATGTTTCTAGATAGGATTTGGAAATACCTGGTGAAGTGTGCTAGATACAAGAGACTCTGAGATTTTGGAAAATAGGGTACAAATTACTTC
Unaligned ( gi|14 ): ATCGTTGAAAAGCCCACAGCAGATTTCCATATAATTCAAAGACCCTACCGTTGAAAAGAACCCACAAAGTACATGTTGACATATATTCCACACAAAAGCTACACAGAATGCCTGACTTAAATGTGCAACCGATAAATCATCTAGATTCTGCAATACCGGTACTGAATTCTTTCAATATCTTTTAGGAAAGCTAAGTAAAAACGACAAAACGATTGTAAAGAGTATCGCATTTGTGCATCTTTGTAGATTAAATATCCAAAAAAT
Unaligned ( gi|16 ): AACGCTGAAAGCCCACAGGGTATTTTCATATAATTCAACAAGCGGATCTCCACCGTTGAAAATAACTCCCATAAAACACGTTTTCGCAGGTTATCGAACATGCAACACAAAAGATACACAAAAATACCGTGTACAGCTGATAATAACACTTAATTTCAAGACGAAAATTCAACATTACCGGTAACTGAGGACCTTCTTTCAAAAGGTTAGAAAAACACGAT
Unaligned ( gi|17 ): CTCTGGCTCCATCTCTCCATCATGTACAGAAGAACAATACAGAATAGGCCATACAAGAGCAAGAGAAAATGGACTGCTTATTATAATACGGGAGTTCTGAGATCCGTTTTTAAAACGACCGATTCACTCTAAAAGAAAAAAAACCGCTGAAAGTCCACAGGATATTTCCATATAAATCAACAAGAAAATCTCACCGATGAAAAGAACCCCCGAAA
Unaligned ( gi|18 ): AATAGGAATACCATGATATACAATGTACCGGTATGTACAGCTAATGAGAATATTGAAAATCCAAAAACAATTGAATACCGGCCAAATGTACTTCTAATTTTTGTGTTCTTTTAGGCAAATATGAAAAATACCCAAACGATGAACAATTTGTTCTTGCTGTTTTTGAAATATTACATAGAAATTGAC
Unaligned ( gi|20 ): AAAAGCTAAAAGTCCGTATGATATTTTTATGTCATTGAATAAGATGGACTTTTTCAGTTGTGAAATGAGAAACCCCACCACCATCCACCTCTTGAGGCTACATGATAGCGTGTTGACGAATCATCGAACATGCAAAC
Unaligned ( gi|21 ): CATTCAAAATTCCTTTATTCCATGGGTGATCCAAAAAATGCGTGTCTAAGGATGAATCTAACTGAATCTTTAAAGGTAAACTTTAATTTTTAATGTAAAAAATGTTGACATTAAAGAAATACTACAACCAGAAGTAT
Unaligned ( gi|23 ): TGTCTTGTAGCAATTGAAAAATACCCAAACAATAACAATTCGTTCTTGCTGTTTTTGAATCAGAAAATACTCGTCAAAGTGTTCTACATCGGTCATGAAAACAG
Unaligned ( gi|26 ): TAAAGACGAAAAATACAAAAATAGGCCGTGCAAGATCAAAAGAAAATGAACTGCTAATTCATTCGATCCATCTTTTTAAAAAAACC
Alignments
lowQualScore : 222222222 11111111 5555555555555555555555555555 111111111111111 11111 111111 11111111 111111 111111111 111 11111 222222222 11111 3333333333 1111 1111 22222222222 111111 4444444444444444444444444444444444444444 11111 1 11111 11111 11111 111111 111
lowQualScore : 000000000 0 00000000 44 4 3 4 4 2 3 666 55 33 0 1 0000000000000000000000000000 4 4 777 55 0 55 4 666666666666666 2 4 4 8888 00000 333333 8 4 55 44444444 4 111111 4 3 333333333 3 3 1 4 4 4 111 2 4 1 4 4 9999 66 4 11111 000000000 888 5 22222 5 5 5555555555 2 4 0000 0000 0 2 11111111111 444444 00 0 3333333333333333333333333333333333333333 11111 0 2 8 777 4 777 2 8888 4 5 2 77777 4 0 22222 5 5 1 0 33333 000000 66 1 000 2
lowQualScore : ......... . ........ .. . . . . . . ... .. .. . . ............................ . . ... .. . .. . ............... . . . .... ..... ...... . . .. ........ . ...... . . ......... . . . . . . ... . . . . . .... .. . ..... ......... ... . ..... . . .......... . . .... .... . . ........... ...... .. . ........................................ ..... . . . ... . ... . .... . . . ..... . . ..... . . . . ..... ...... .. . ... .
lowQualScore : 000000000 2 11111111 66 0 9 0 0 3 6 444 00 88 5 4 1111111111111111111111111111 0 0 888 11 9 55 0 111111111111111 4 0 0 5555 00000 111111 0 0 55 55555555 0 555555 0 6 888888888 3 3 6 0 0 0 000 4 4 9 4 4 7777 99 4 11111 000000000 888 0 22222 0 0 4444444444 2 7 7777 6666 2 5 88888888888 444444 44 1 9999999999999999999999999999999999999999 11111 9 0 0 000 0 000 6 5555 0 7 2 99999 4 1 99999 0 0 1 8 99999 777777 99 1 000 5
consensus : CGTGTACAACCGTT---------ACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGNAATCCC-C---GCTT-CGATTTCGGCCGGAAAGTAN------GTCAC-GGTT--GC---GT-TTT-TTCTTGCA-TTTNT-AACCATTACT-TTTA--CAAAA-GATA-------TAT-----CNCAC-GGAACAATA-CGAT----AAC-----CAAGGTA----A-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTATGGCCAAA-CACTTC---GACA-ACAA-TTT-GCAGAGTGGAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------AATACTCGT--G-TACGGAATGCATG----CGGTCGATTCGTGTCA-A-------CGTT------GCAAAAGTAAC------GGAGG------------GG-G-AGT---------CGAT-----TTTCGGTAAAGATTCAGAT-GG-GGGAG---T-CG---CAAAA----T-AAGTGTTGAC-A-TC-CTCTAAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TCGTT---TACACAGAATT
Reference ( family-2479 ) : CGTGTACAACCGTT---------ACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGNAATCCC-C---GCTT-CGATTTCGGCCGGAAAGTAN------GTCAC-GGTT--GC---GT-TTT-TTCTTGCA-TTTNT-AACCATTACT-TTTA--CAAAA-GATA-------TAT-----CNCAC-GGAACAATA-CGAT----AAC-----CAAGGTA----A-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTATGGCCAAA-CACTTC---GACA-ACAA-TTT-GCAGAGTGGAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------AATACTCGT--G-TACGGAATGCATG----CGGTCGATTCGTGTCA-A-------CGTT------GCAAAAGTAAC------GGAGG------------GG-G-AGT---------CGAT-----TTTCGGTAAAGATTCAGAT-GG-GGGAG---T-CG---CAAAA----T-AAGTGTTGAC-A-TC-CTCTAAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TCGTT---TACACAGAATT
gi|1 : GTGCACAACCATT---------ACTTT-----------------------TG-GGGGAGTCG-ATTTTAAC-GCCAGGGGGAGTCGGTAGTTTC-C---GCTT-GGATATCCGCAGTACAGTAG------ATTAC--------C---GTATTT-TTCTTGCG-TTTCT-AACCATCACT-TT-----------------------------------------ATG-CGAT----AGC-----CAAGGTACTGTACATATACATCAGCAGTTTGCATTAGGTTA-AGC--T--------T-CTTACTATA-GTATGGTCAAA-TATTTC---TGCA--CAA-TTC-GCAGAATGGAAAA-TATTTGCT-T-TG---TCGATAACAAAAACATTGCATTAAAGAATAA-ATGCG-CAGC-AAAT---TTTGATAGTACGTAA--TCCAAATGTTTTA-C-----TTT-AA-----C---------TTCAT---TGTTTA-ACA----CCCAGGAT-TTT-GAA----------AATTTTCGTTTA-TACGAAATACATG----GGGTCGATACGTGTCA-AATGTCAATGTCAATTTAGCAAAAGTAAC------AAAGGTGAGGGGTGGGTGG-G-TGT---------CGAT-----TTGCGGTAAAGATTCTGAT-GG-GGGGGGGAT-CG---CAAAA----T-AAGTGTTGATAA-TC-CTCTAAATGTTT----AAT-AAAATG-------GCATAT--T-----TAAA-A----AAAAATCAGTT--TCGTT---TACA
gi|10 : attCGGGGGGA-----TAACCTC-CATCGTTT-GGAATTC--CC----AGTAA------GT-AT-GG----GC---AT-ATTATCCTTGAAATTTCCGAACCATTGC----------AAA-GAAA-------TATGTTGTCAAACAGGAACAATA-CCATATCGAAC-----CA---TA----A-GTACATATCGAGAATTTGC-CTGCACCATACCAAT--------CGCT------A-GTATAAC--AA-CACTTCCTAAGCA-CCCGTTTT-GCATAATAGAACATTTTTCGCTAG-TGCGCTCGTTGACAAA----------TACCGAA-AA-TTACGCCAACAAAACCAGATT-ATGCTAAGTAAATCCCCAATGTTTTT-TATATACTTTCATTGTCCCTTCTATCATTCATATATTTTTATACAAAACTTCAGGATATTGCGA-----------AATTC-CGT--T-TACGGAataacatatatatatatatatattcaaagccatgacttgaaaaaaagcattctttgtggctccattgacctaacctattaagagaagtaaaatatataatagtccattcaagatcgagagaaaatgaattgtttgttaatctattcgattcaacaaaaaaatgtcttctcccaacaccaacccccctccccaaaacccccccaaaagttgaaagcccgcaagatatttccatgtgatcgaacaaaaggatcacctttgttgaaatgcacccccaaaattaaggttatgtgtttgcgaattatcgaacttggtaacacagaagaaaaattagaataccatgatttaatatggtatagctgagaagatgaaaatccaaaaacatcgataccagttagttaaactcgataattgcgaataaagtattacaattttttagtcttgtacatgtagcagatgaaaaataccctaagttaacgttgacatttcgttcttgttttcgaatgcaagaaactaagaaattttggaagaaaggatacaaattgctaaagttcattcaaaattccttgatttcatgggtgatccaaaaattgcgcgccaaattaaagatgtgcatggttgttactggaggatgaattctaacggaatctttacaaataaactttgtagtccctagctttaatgtttaattcaagtaatgtcgaccttaaaacatactaaaccagaagtat
gi|11 : gTACTCCT--GGTTTGGAATGCATGGGCTCGATCGATCCATGCCA-A-------CATT------GCAA-----AC------G------------------------------------------------TAAAG-----GAG-GG-GAGAG---T-CG---CGAAA----T-AAGTGTTGACAA-TC-CTCTAAATGTTTTTAAAAC-AAAATG-ATATAAATATAT--C--TTATATACATTGTAAACAACAGTT--AAGTTAAATACACAAACTTta
gi|13 : AAG--AA-CG-GA--------CTT---AC-GCCAGGAGGATTCGATAATCTC-C---GCTT-GGAAATCGACAGCAAAGTAG------GTTAC-CATTT-GC---GT-T--------GCC-TCTCT-AACCATTACT-TTTG--CAAAA-GATATATAGGCTAT-----CACAC-G--ACAATA-AGAT-----AC-----TAAGGT-----A-ATCT-CATCAGCAGTTTGT-CTGGATTA-ACC--TTTCTTAAAT-TT------A-GTATAGCCAAA-CACTTC---GA-A-ACCA-TTC-Gtcaaagccatgactaggcaaacttaatatagaatagttcattcacagattaagagaaaatggggtacagagttaaattaatcaagattgaaattaacgtttcctctggaatgaaatcaaatgttatcaacttatacaaagtacatgtac
gi|15 : CGTGCACAACTGTTTAAAGTGTTACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GTGGAGTCG-CTTTTAAC-GCCA-GGGGAGTCAATAATCTC-A---GATT-GAATTT--------------------------------------T-TTT-TTCT-----------AACCATTACA-TCTA--CAAAA-GATA-------TGT-----CGCAC-AGAACAATG-CGAT----AGC-----CAAGGTA----C-ATATACATCAGCAGTTTGTATTGGATTA-AGC--T--------T-CT------A-GTATGGTCAAA-TATTTC---GGC--ACAA-TTT-GCAGAATaaaaaaaaattgcatgtgaaaaatagcaatataggttatcaaattattctatatgctaaaaaaaattttatag
gi|19 : cGTTTTA-T-----TTTTCATTGTTC---------TTCAT---AGTTTA-ACA----CTCGAGAT-TTG---AG---------AATACTC-T--C-TAGGGAATGCATG----AAATCGATTCGTGTCA-----------TT------GTA----TAAC------GGAGG------------GG-A-AGT---------CGCT-----TGTCGGTAAAGATTCAGAT-AGCGGGAG---T-TG---CAAAA----T-AAGTGTTGAC-ATTC-CTCTAAATGTTtcaaaatc
gi|2 : tCGTGTACAACCGTT---------ACTT----------------------A--G-GGAGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGAAATTCT-C---GCTT-CGATTTCGACCGGAAAGTAT------GTCAC-GGTT-----------TT-GTCTTGCA-TTTAT-AACCATTACT-TTTA--CAAAA-GATG-------TAT-----CTCAC-GGAACAGTA-CGAC----AAC-----CAAGGTA----A-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-CTATGATCAAA-CACTTC---AACA-ACAA-TTT-GCATGGTGTAACA-TTTTCGCT-G-TG---ACGGTGACAAACACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTGTT-----TTTTCATTGTTC---------TTCNN---NNNNNN-NNN----NNNNNNNN-NNN-NNNTACACAGTGAAATACT--T--G-TACGGAA-GCATG----CGGT--ATT-GT-TCAGA-------TTTT------ATCAAAG-AAC------GGAGG------------GG-G-AGGGGGGGAGAACGATTAATATTTTAGCAAA-AGTC-GAT-GG-GG--A---T-CG---CATAA----T-AA-TG-TGA--A-CC-CT---GATG-------GAG-AGAA-G-ACAT-AACATA---A--TTGTAC--A----AAGCATCAGTTAATTGTT---TACA---AATT
gi|22 : acTTCGGTAAAGATTCAGAT-TATAAGAG---A-TG---CAGAA----T-AAGTGTCGTC-A-TTTCTCTAAAT-CTT----GAT-AAAATG-ATATAAACATCTAAT--TTGTATA-T----AAATATCAGTT--TCAAT---TACACttaaaagtcagacccagaaaagcaatcattgtgccatcgtactccatagagaaggaagtacaaaatatcaataaaatatgatttgattaccctcaaaaaatcccgttgaattgtaaaaatttcgacagcgaaagctaaccccgtatgattttttatgtgcattgaataaagacgtccctgaaggaccccagcgggctacgtgtacgaatcatagaaattagaacatgaaacaatgtacaggtagaacagtgatgagatttgataatccaaacatgaaccggtcatgaatggaatttgtactcaatttgtgtgtttggttacatgaaaataacaaacgatacattcggttcttgctgtttttgaatcaaaataccgaaagttttctatcccatgtcagataaaca
gi|24 : gaaaCGTGTACAACCTTT---------ACTTTGGGGGAGTCCCTAAAAAG--AACCT-GGAGAGTTG-CTTTCAAC-GCCAGGAAGAG-------------------T-CGATTTCGACCGGAAAGTAT------GTCAC-GGTT--attgatatttagaaatgac
gi|25 : acATGGTCAAA-CACTTT---AACA-ACAA-TTT-GCATGGTGAAACA-TTTTCGCT-G-TG---TCGGTGAC-ACAGCATTACATTATAGAATAA-TTCCG-CAGC-AAAC---CTT
gi|27 : AT-----TTTCATTAAAGATTCAGACAGG-GGGAG---T-GG---CAAAACATCT-AAATGT
gi|28 : -ACGA-TTT-GCAGAATGGA-CA-TTTTCGCT-G-TG---TCCGTAACAAAAgtacagtatgtacgcattttcatac
gi|29 : atacactctagtacaggcTGAACATAT--T--TTGTACA-A----AAGCATCAGTT--TTG
gi|3 : CGTGTATAACCGTT---------ACATTGAGAGAGTCGCTAAAAAT--AA-CG-GGGGAGTCG-CTCTCAAT-GCCATTGGGAGTCGGAAATCCT-C---GCTT-CGATTTCAGCCGGAAGGCAG------GTCACTGATT--------T-TTT-TTTTTGCA-TTTAT-GACCATTGTT-TTAA--CAAAC-GATA-------TAC-----CGCAC-GGAACAATA-CGAT----AATTTAATCGAGGTA----C-ATCTACATCAGCAGGTTTT-CTGGATTA-ACC--C--------T-CT------A-GTATGGCCAAA-CAC-------------AA-TTT-GCAGAATGGAACA-TTTTTGCT-G-T-----CGGTGACAAATACATTGCATTATAGAATAA-TTATG-CAGC-AAAT---CTTGATAGTAAGCAA--TCCAAACGTTTCA-T-----ATTTTATTGTTT---------TTTAT---TGTTTA-ACA----ATCAGTAT-TTG-GAA----------AATACTAAT--G-TACAGATTGTATG----CAGTCGATTCGTGACA-A-------TGTT------GCAAATGTAACGAAAAAGGGGG------------GG-G-GGG---------CGAT-----TTTTGGCAAAAATTCAGAA-GG-AGGTG---TGTGTAACAAAA----TAAAGCGTTGGC-A-TA-TTTTAAGTGTTT-----ATGAAAATG-ATATAAATATAT--TGATTGTATG-T----AAACATCAGTT--TCGTT---TACAGAGAA
gi|4 : acCGTGTACAACCGTT---------ACTTTGGGGGAGTCGCT--------------------------TTCAAC-GCCAGGGGGAGTCGGAAATCCT-C---GCTT-CGATTTCGACCGGAAAGTACCGGTATGTCAC-GGTT-----------TT-TTCTTGCA-TTTAA-AACCATTACA-TTTA--CAAAA-GATA-------TAT-----CTCAC-GGAACAATA-CGAT----AAC-----CAAGGTA----C-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTGTGGCCACA-CACTTC---AACA-ACAA-CTT-GCAGAGTGCAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATAGCATTATAGGATAAATTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACATTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------A-TACTCGT--G-TACGGATTGCATG----CGGTTGATTTGTTTCA-A-------TGTT------ACAAAAGTAAC------GGAGG------------GG-GGAGT---------CGAT-----TTTCAGCAAAGGTGCAGATAGG-GGGAG---T-CG---CA-------T-AA------------C-CTCTGAATGTTT----GAT-AAAATG-ACATACACATAT--T--TTGTACA-A----AAGCATCAGTT--TTATT---TACACAGAATTatgattagagaaaggcatacaccatggcttcatttattcgttacagaggaaatataaaaaataggtcatacaa
gi|5 : acCGTGTACAACCGTT---------GCTTTGGGAGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGAAGTCGGAAATCCT-C---GCTT-CGATTTCAGCCGGAAAGTAT------GTCAT-GGTTTGGTTTGGT-TTT-TTTTTGCA-TTTAT-AACCATTACT-TTTA--CAAAA-AATG-------TTT-----CTCGC-GGAATAATA-CGAT----AAT-----CAAGGTA----A-ATCCACATCAGCAGTTTGT-CAGGATTA-ACC--C--------T-GT------A-GTATGGTCAAA-CACTTC---AACA-ACAA-TTT-GCATAGTGTAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AGAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----TTCAAGAT-TTG-GAAT---------AAT-CTCGT--G-TACGGAATGCATG----CAGTCGATTCGTTTCA-A-------TGTT------ACAAAAGTAAC------GGAGG------------GGCG-AGT---------CGAT-----TTTCAGC--AGATTCAGAT-GG-GGGAG---T-CG---CATAA----T-AATTGCTGAC-ATTC-CTCTGAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TTGTT---TACACAGAATTttaaaagtcatgactagaagaaagtnnnnnnnnnnnnnnnnnnnnnnnnnagtaatctttgtggctccatcgacccaagagtaggaaagtacaaa
gi|6 : G-GGAGGGTCAACTTTCAGCTGCCAGGGGGAGTTGATAACCTC-C---GCGT-GGAATTCGGCAGCAAAGTA-------------GGTT--GC---GT-GTT-TTCTTGCA-TTTGT-AATAATTACT-TTTATACAAAA-GACA-------T-------CGCAC-GGCACAATA-CAAT----AAC-----CAGGATA----C-ATTTATAACAGAAGTTTGC-CAGGATAA-ATC--T--------T-TT------A-G---------A-C-TTTC---GGCT--CTA-CTT-GCAGAATAGCACA-TTTTCGCT-G-TG---TTGAAGACAAAGATATTGAACTACAGAATAA-TTAAA-CATA-AAAA---CTCGTTAGTAGGTAA--TCCAAATGTTTTA-T-----TTTTCATTGATC---------TTCAT---TGTTTA-ACA----ATCAGGAT-TTG-GAA----------AACACTCAT--T-TACGGAATGCATG----GGGTCGATTTGTGTCA-A-------CATT------GTAAAAGTAAT------G----------------------GT---------CGAA-----ATTCGGTCAAGATTCAGATAGG-AGGAA---T-TG---CGATA----C-AAA----------------TAAATGTTT----AAG-GAAATGCATATAAACAGTT--TCATTACACA-A----AAaa
gi|9 : CGTGTACAACTGTT---------ACTTTGGGGGAATCGCTAAAAAAGAAA-CGTGGAGAGTCG-CTTTCAAC-GCCAGGGAGAGTCAGAAATCCCTC---GCTTTCGATTTCGACTGGAAAGTATT-----GTCAA-GGTT-----------TT-TTCTTGCA-TTT-T-AACCATTACTCTTTA--CAAAAAGATG-------TAT-----CTAAC-GGAACAATAACGAC----AAC-----CAAGGTA----A--TCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------AAGTATGGCCAAAACACTTT---CACGCACAA-TTTTGCAGAGTGCAACA-TTTTCGCT-GGTGG--TCGGTGACAAAAACATTGCAGTATAGGATAA-TTAAG-CAGC-AAAC---ATTGATTTTAAGTAA--TCCAAATGTTTTG-A-----TTTTTATttttcaaagtcctcacatgactagaaagtagcaatcactatggctccatcgatcttagagaggaaatacacaa
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AAATCTGAAAACCCAACAGGATATTTCCATGTAACGTTGAAATGAACCCCCTAAATACTAAGTGTTGACAAATTATCGAACATGAAACACTGAAGAAAAATAGAATATCATGGTGTATGTACAGCTGATTAAAAAAAACATTGATACCGGTTAATGAGACCTTCCGAAAAGCTCGTTAAACACGACAATTGCAAATATTTGTGGATCTTGTTGCAGATGAAAAGTATCCAAACGATAATATTCGTTTTGGTTGTTTTTGAAATTGGGAATTACCCGTCAAATTGTACTATGTGCAAGAAACTAAGAGATTTTGGAAGATAGGATACAAATAATTTCATGGGTGATAAAAAAGCGTATCAAATTAAAGATGGGGTTGCTGTTAGAAGATGAACCCTAACTGAATCTTTACTAATAAACGTTGTTATCCATAACTTTAATGTTTGAT
Unaligned ( gi|8 ): TTGTGAATGAACCCTAAGAATACTAAGTGTTGACAAATTAATCGAAACATGAAACACTGAAGAAAAAATAGAATATCATGGTGTATGTACAGCTTGATTAAAAAAAACACTTGATACCGGTTAATGAGACCCTTCCGAAAAGCTCGTTAAATCACGACAATTGCAAATATTTGTGGATCTTGTTGCAGATGAAAAGTATCCAAACGATAATTTTCGTTTTGGTGTTTTTGAAATTGGGAATTACCCGCTCAAATTGTACTTATGTGCAAGAAACTAAGAGATATTTGAAGAGATAGGATACAAATTAATTTTCATGGGTGATAAAAAAGCGTATCAATATTAAAGATGGGGTTGCTGTTAGGAAGTATGAACCACTAACGTTGAATTCTTTACTTAATTATAACTGTTATCCATAACTTTAATGTTTGAT
Unaligned ( gi|12 ): AATGTTGACGAATTATCGAACATGCAAGCAAAATAGAATATAATAATTTATTTACAATGTACATCTAATGAGAAAATTAAAATTCAAAATCATTGATACCGGTAATAATTGATGACAATCCGAAAAGCTAGTTAAATATATTGCTTATAGATTATTAACGTTTTTGTGTCTGGTTGCAGATGGAAAAATATCCTAAAAATAACACTTCCTTCTTGATGTTTCTAGATAGGATTTGGAAATACCTGGTGAAGTGTGCTAGATACAAGAGACTCTGAGATTTTGGAAAATAGGGTACAAATTACTTC
Unaligned ( gi|14 ): ATCGTTGAAAAGCCCACAGCAGATTTCCATATAATTCAAAGACCCTACCGTTGAAAAGAACCCACAAAGTACATGTTGACATATATTCCACACAAAAGCTACACAGAATGCCTGACTTAAATGTGCAACCGATAAATCATCTAGATTCTGCAATACCGGTACTGAATTCTTTCAATATCTTTTAGGAAAGCTAAGTAAAAACGACAAAACGATTGTAAAGAGTATCGCATTTGTGCATCTTTGTAGATTAAATATCCAAAAAAT
Unaligned ( gi|16 ): AACGCTGAAAGCCCACAGGGTATTTTCATATAATTCAACAAGCGGATCTCCACCGTTGAAAATAACTCCCATAAAACACGTTTTCGCAGGTTATCGAACATGCAACACAAAAGATACACAAAAATACCGTGTACAGCTGATAATAACACTTAATTTCAAGACGAAAATTCAACATTACCGGTAACTGAGGACCTTCTTTCAAAAGGTTAGAAAAACACGAT
Unaligned ( gi|17 ): CTCTGGCTCCATCTCTCCATCATGTACAGAAGAACAATACAGAATAGGCCATACAAGAGCAAGAGAAAATGGACTGCTTATTATAATACGGGAGTTCTGAGATCCGTTTTTAAAACGACCGATTCACTCTAAAAGAAAAAAAACCGCTGAAAGTCCACAGGATATTTCCATATAAATCAACAAGAAAATCTCACCGATGAAAAGAACCCCCGAAA
Unaligned ( gi|18 ): AATAGGAATACCATGATATACAATGTACCGGTATGTACAGCTAATGAGAATATTGAAAATCCAAAAACAATTGAATACCGGCCAAATGTACTTCTAATTTTTGTGTTCTTTTAGGCAAATATGAAAAATACCCAAACGATGAACAATTTGTTCTTGCTGTTTTTGAAATATTACATAGAAATTGAC
Unaligned ( gi|20 ): AAAAGCTAAAAGTCCGTATGATATTTTTATGTCATTGAATAAGATGGACTTTTTCAGTTGTGAAATGAGAAACCCCACCACCATCCACCTCTTGAGGCTACATGATAGCGTGTTGACGAATCATCGAACATGCAAAC
Unaligned ( gi|21 ): CATTCAAAATTCCTTTATTCCATGGGTGATCCAAAAAATGCGTGTCTAAGGATGAATCTAACTGAATCTTTAAAGGTAAACTTTAATTTTTAATGTAAAAAATGTTGACATTAAAGAAATACTACAACCAGAAGTAT
Unaligned ( gi|23 ): TGTCTTGTAGCAATTGAAAAATACCCAAACAATAACAATTCGTTCTTGCTGTTTTTGAATCAGAAAATACTCGTCAAAGTGTTCTACATCGGTCATGAAAACAG
Unaligned ( gi|26 ): TAAAGACGAAAAATACAAAAATAGGCCGTGCAAGATCAAAAGAAAATGAACTGCTAATTCATTCGATCCATCTTTTTAAAAAAACC
Alignments
lowQualScore : 222222222 11111111 5555555555555555555555555555 111111111111111 11111 111111 11111111 111111 111111111 111 11111 222222222 11111 3333333333 1111 1111 22222222222 111111 4444444444444444444444444444444444444444 11111 1 11111 11111 11111 111111 111
lowQualScore : 000000000 0 00000000 44 4 3 4 4 2 3 666 55 33 0 1 0000000000000000000000000000 4 4 777 55 0 55 4 666666666666666 2 4 4 8888 00000 333333 8 4 55 44444444 4 111111 4 3 333333333 3 3 1 4 4 4 111 2 4 1 4 4 9999 66 4 11111 000000000 888 5 22222 5 5 5555555555 2 4 0000 0000 0 2 11111111111 444444 00 0 3333333333333333333333333333333333333333 11111 0 2 8 777 4 777 2 8888 4 5 2 77777 4 0 22222 5 5 1 0 33333 000000 66 1 000 2
lowQualScore : ......... . ........ .. . . . . . . ... .. .. . . ............................ . . ... .. . .. . ............... . . . .... ..... ...... . . .. ........ . ...... . . ......... . . . . . . ... . . . . . .... .. . ..... ......... ... . ..... . . .......... . . .... .... . . ........... ...... .. . ........................................ ..... . . . ... . ... . .... . . . ..... . . ..... . . . . ..... ...... .. . ... .
lowQualScore : 000000000 2 11111111 66 0 9 0 0 3 6 444 00 88 5 4 1111111111111111111111111111 0 0 888 11 9 55 0 111111111111111 4 0 0 5555 00000 111111 0 0 55 55555555 0 555555 0 6 888888888 3 3 6 0 0 0 000 4 4 9 4 4 7777 99 4 11111 000000000 888 0 22222 0 0 4444444444 2 7 7777 6666 2 5 88888888888 444444 44 1 9999999999999999999999999999999999999999 11111 9 0 0 000 0 000 6 5555 0 7 2 99999 4 1 99999 0 0 1 8 99999 777777 99 1 000 5
consensus : CGTGTACAACCGTT---------ACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGNAATCCC-C---GCTT-CGATTTCGGCCGGAAAGTAN------GTCAC-GGTT--GC---GT-TTT-TTCTTGCA-TTTNT-AACCATTACT-TTTA--CAAAA-GATA-------TAT-----CNCAC-GGAACAATA-CGAT----AAC-----CAAGGTA----A-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTATGGCCAAA-CACTTC---GACA-ACAA-TTT-GCAGAGTGGAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------AATACTCGT--G-TACGGAATGCATG----CGGTCGATTCGTGTCA-A-------CGTT------GCAAAAGTAAC------GGAGG------------GG-G-AGT---------CGAT-----TTTCGGTAAAGATTCAGAT-GG-GGGAG---T-CG---CAAAA----T-AAGTGTTGAC-A-TC-CTCTAAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TCGTT---TACACAGAATT
Reference ( family-2479 ) : CGTGTACAACCGTT---------ACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGNAATCCC-C---GCTT-CGATTTCGGCCGGAAAGTAN------GTCAC-GGTT--GC---GT-TTT-TTCTTGCA-TTTNT-AACCATTACT-TTTA--CAAAA-GATA-------TAT-----CNCAC-GGAACAATA-CGAT----AAC-----CAAGGTA----A-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTATGGCCAAA-CACTTC---GACA-ACAA-TTT-GCAGAGTGGAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------AATACTCGT--G-TACGGAATGCATG----CGGTCGATTCGTGTCA-A-------CGTT------GCAAAAGTAAC------GGAGG------------GG-G-AGT---------CGAT-----TTTCGGTAAAGATTCAGAT-GG-GGGAG---T-CG---CAAAA----T-AAGTGTTGAC-A-TC-CTCTAAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TCGTT---TACACAGAATT
gi|1 : GTGCACAACCATT---------ACTTT-----------------------TG-GGGGAGTCG-ATTTTAAC-GCCAGGGGGAGTCGGTAGTTTC-C---GCTT-GGATATCCGCAGTACAGTAG------ATTAC--------C---GTATTT-TTCTTGCG-TTTCT-AACCATCACT-TT-----------------------------------------ATG-CGAT----AGC-----CAAGGTACTGTACATATACATCAGCAGTTTGCATTAGGTTA-AGC--T--------T-CTTACTATA-GTATGGTCAAA-TATTTC---TGCA--CAA-TTC-GCAGAATGGAAAA-TATTTGCT-T-TG---TCGATAACAAAAACATTGCATTAAAGAATAA-ATGCG-CAGC-AAAT---TTTGATAGTACGTAA--TCCAAATGTTTTA-C-----TTT-AA-----C---------TTCAT---TGTTTA-ACA----CCCAGGAT-TTT-GAA----------AATTTTCGTTTA-TACGAAATACATG----GGGTCGATACGTGTCA-AATGTCAATGTCAATTTAGCAAAAGTAAC------AAAGGTGAGGGGTGGGTGG-G-TGT---------CGAT-----TTGCGGTAAAGATTCTGAT-GG-GGGGGGGAT-CG---CAAAA----T-AAGTGTTGATAA-TC-CTCTAAATGTTT----AAT-AAAATG-------GCATAT--T-----TAAA-A----AAAAATCAGTT--TCGTT---TACA
gi|10 : attCGGGGGGA-----TAACCTC-CATCGTTT-GGAATTC--CC----AGTAA------GT-AT-GG----GC---AT-ATTATCCTTGAAATTTCCGAACCATTGC----------AAA-GAAA-------TATGTTGTCAAACAGGAACAATA-CCATATCGAAC-----CA---TA----A-GTACATATCGAGAATTTGC-CTGCACCATACCAAT--------CGCT------A-GTATAAC--AA-CACTTCCTAAGCA-CCCGTTTT-GCATAATAGAACATTTTTCGCTAG-TGCGCTCGTTGACAAA----------TACCGAA-AA-TTACGCCAACAAAACCAGATT-ATGCTAAGTAAATCCCCAATGTTTTT-TATATACTTTCATTGTCCCTTCTATCATTCATATATTTTTATACAAAACTTCAGGATATTGCGA-----------AATTC-CGT--T-TACGGAataacatatatatatatatatattcaaagccatgacttgaaaaaaagcattctttgtggctccattgacctaacctattaagagaagtaaaatatataatagtccattcaagatcgagagaaaatgaattgtttgttaatctattcgattcaacaaaaaaatgtcttctcccaacaccaacccccctccccaaaacccccccaaaagttgaaagcccgcaagatatttccatgtgatcgaacaaaaggatcacctttgttgaaatgcacccccaaaattaaggttatgtgtttgcgaattatcgaacttggtaacacagaagaaaaattagaataccatgatttaatatggtatagctgagaagatgaaaatccaaaaacatcgataccagttagttaaactcgataattgcgaataaagtattacaattttttagtcttgtacatgtagcagatgaaaaataccctaagttaacgttgacatttcgttcttgttttcgaatgcaagaaactaagaaattttggaagaaaggatacaaattgctaaagttcattcaaaattccttgatttcatgggtgatccaaaaattgcgcgccaaattaaagatgtgcatggttgttactggaggatgaattctaacggaatctttacaaataaactttgtagtccctagctttaatgtttaattcaagtaatgtcgaccttaaaacatactaaaccagaagtat
gi|11 : gTACTCCT--GGTTTGGAATGCATGGGCTCGATCGATCCATGCCA-A-------CATT------GCAA-----AC------G------------------------------------------------TAAAG-----GAG-GG-GAGAG---T-CG---CGAAA----T-AAGTGTTGACAA-TC-CTCTAAATGTTTTTAAAAC-AAAATG-ATATAAATATAT--C--TTATATACATTGTAAACAACAGTT--AAGTTAAATACACAAACTTta
gi|13 : AAG--AA-CG-GA--------CTT---AC-GCCAGGAGGATTCGATAATCTC-C---GCTT-GGAAATCGACAGCAAAGTAG------GTTAC-CATTT-GC---GT-T--------GCC-TCTCT-AACCATTACT-TTTG--CAAAA-GATATATAGGCTAT-----CACAC-G--ACAATA-AGAT-----AC-----TAAGGT-----A-ATCT-CATCAGCAGTTTGT-CTGGATTA-ACC--TTTCTTAAAT-TT------A-GTATAGCCAAA-CACTTC---GA-A-ACCA-TTC-Gtcaaagccatgactaggcaaacttaatatagaatagttcattcacagattaagagaaaatggggtacagagttaaattaatcaagattgaaattaacgtttcctctggaatgaaatcaaatgttatcaacttatacaaagtacatgtac
gi|15 : CGTGCACAACTGTTTAAAGTGTTACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GTGGAGTCG-CTTTTAAC-GCCA-GGGGAGTCAATAATCTC-A---GATT-GAATTT--------------------------------------T-TTT-TTCT-----------AACCATTACA-TCTA--CAAAA-GATA-------TGT-----CGCAC-AGAACAATG-CGAT----AGC-----CAAGGTA----C-ATATACATCAGCAGTTTGTATTGGATTA-AGC--T--------T-CT------A-GTATGGTCAAA-TATTTC---GGC--ACAA-TTT-GCAGAATaaaaaaaaattgcatgtgaaaaatagcaatataggttatcaaattattctatatgctaaaaaaaattttatag
gi|19 : cGTTTTA-T-----TTTTCATTGTTC---------TTCAT---AGTTTA-ACA----CTCGAGAT-TTG---AG---------AATACTC-T--C-TAGGGAATGCATG----AAATCGATTCGTGTCA-----------TT------GTA----TAAC------GGAGG------------GG-A-AGT---------CGCT-----TGTCGGTAAAGATTCAGAT-AGCGGGAG---T-TG---CAAAA----T-AAGTGTTGAC-ATTC-CTCTAAATGTTtcaaaatc
gi|2 : tCGTGTACAACCGTT---------ACTT----------------------A--G-GGAGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGAAATTCT-C---GCTT-CGATTTCGACCGGAAAGTAT------GTCAC-GGTT-----------TT-GTCTTGCA-TTTAT-AACCATTACT-TTTA--CAAAA-GATG-------TAT-----CTCAC-GGAACAGTA-CGAC----AAC-----CAAGGTA----A-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-CTATGATCAAA-CACTTC---AACA-ACAA-TTT-GCATGGTGTAACA-TTTTCGCT-G-TG---ACGGTGACAAACACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTGTT-----TTTTCATTGTTC---------TTCNN---NNNNNN-NNN----NNNNNNNN-NNN-NNNTACACAGTGAAATACT--T--G-TACGGAA-GCATG----CGGT--ATT-GT-TCAGA-------TTTT------ATCAAAG-AAC------GGAGG------------GG-G-AGGGGGGGAGAACGATTAATATTTTAGCAAA-AGTC-GAT-GG-GG--A---T-CG---CATAA----T-AA-TG-TGA--A-CC-CT---GATG-------GAG-AGAA-G-ACAT-AACATA---A--TTGTAC--A----AAGCATCAGTTAATTGTT---TACA---AATT
gi|22 : acTTCGGTAAAGATTCAGAT-TATAAGAG---A-TG---CAGAA----T-AAGTGTCGTC-A-TTTCTCTAAAT-CTT----GAT-AAAATG-ATATAAACATCTAAT--TTGTATA-T----AAATATCAGTT--TCAAT---TACACttaaaagtcagacccagaaaagcaatcattgtgccatcgtactccatagagaaggaagtacaaaatatcaataaaatatgatttgattaccctcaaaaaatcccgttgaattgtaaaaatttcgacagcgaaagctaaccccgtatgattttttatgtgcattgaataaagacgtccctgaaggaccccagcgggctacgtgtacgaatcatagaaattagaacatgaaacaatgtacaggtagaacagtgatgagatttgataatccaaacatgaaccggtcatgaatggaatttgtactcaatttgtgtgtttggttacatgaaaataacaaacgatacattcggttcttgctgtttttgaatcaaaataccgaaagttttctatcccatgtcagataaaca
gi|24 : gaaaCGTGTACAACCTTT---------ACTTTGGGGGAGTCCCTAAAAAG--AACCT-GGAGAGTTG-CTTTCAAC-GCCAGGAAGAG-------------------T-CGATTTCGACCGGAAAGTAT------GTCAC-GGTT--attgatatttagaaatgac
gi|25 : acATGGTCAAA-CACTTT---AACA-ACAA-TTT-GCATGGTGAAACA-TTTTCGCT-G-TG---TCGGTGAC-ACAGCATTACATTATAGAATAA-TTCCG-CAGC-AAAC---CTT
gi|27 : AT-----TTTCATTAAAGATTCAGACAGG-GGGAG---T-GG---CAAAACATCT-AAATGT
gi|28 : -ACGA-TTT-GCAGAATGGA-CA-TTTTCGCT-G-TG---TCCGTAACAAAAgtacagtatgtacgcattttcatac
gi|29 : atacactctagtacaggcTGAACATAT--T--TTGTACA-A----AAGCATCAGTT--TTG
gi|3 : CGTGTATAACCGTT---------ACATTGAGAGAGTCGCTAAAAAT--AA-CG-GGGGAGTCG-CTCTCAAT-GCCATTGGGAGTCGGAAATCCT-C---GCTT-CGATTTCAGCCGGAAGGCAG------GTCACTGATT--------T-TTT-TTTTTGCA-TTTAT-GACCATTGTT-TTAA--CAAAC-GATA-------TAC-----CGCAC-GGAACAATA-CGAT----AATTTAATCGAGGTA----C-ATCTACATCAGCAGGTTTT-CTGGATTA-ACC--C--------T-CT------A-GTATGGCCAAA-CAC-------------AA-TTT-GCAGAATGGAACA-TTTTTGCT-G-T-----CGGTGACAAATACATTGCATTATAGAATAA-TTATG-CAGC-AAAT---CTTGATAGTAAGCAA--TCCAAACGTTTCA-T-----ATTTTATTGTTT---------TTTAT---TGTTTA-ACA----ATCAGTAT-TTG-GAA----------AATACTAAT--G-TACAGATTGTATG----CAGTCGATTCGTGACA-A-------TGTT------GCAAATGTAACGAAAAAGGGGG------------GG-G-GGG---------CGAT-----TTTTGGCAAAAATTCAGAA-GG-AGGTG---TGTGTAACAAAA----TAAAGCGTTGGC-A-TA-TTTTAAGTGTTT-----ATGAAAATG-ATATAAATATAT--TGATTGTATG-T----AAACATCAGTT--TCGTT---TACAGAGAA
gi|4 : acCGTGTACAACCGTT---------ACTTTGGGGGAGTCGCT--------------------------TTCAAC-GCCAGGGGGAGTCGGAAATCCT-C---GCTT-CGATTTCGACCGGAAAGTACCGGTATGTCAC-GGTT-----------TT-TTCTTGCA-TTTAA-AACCATTACA-TTTA--CAAAA-GATA-------TAT-----CTCAC-GGAACAATA-CGAT----AAC-----CAAGGTA----C-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTGTGGCCACA-CACTTC---AACA-ACAA-CTT-GCAGAGTGCAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATAGCATTATAGGATAAATTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACATTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------A-TACTCGT--G-TACGGATTGCATG----CGGTTGATTTGTTTCA-A-------TGTT------ACAAAAGTAAC------GGAGG------------GG-GGAGT---------CGAT-----TTTCAGCAAAGGTGCAGATAGG-GGGAG---T-CG---CA-------T-AA------------C-CTCTGAATGTTT----GAT-AAAATG-ACATACACATAT--T--TTGTACA-A----AAGCATCAGTT--TTATT---TACACAGAATTatgattagagaaaggcatacaccatggcttcatttattcgttacagaggaaatataaaaaataggtcatacaa
gi|5 : acCGTGTACAACCGTT---------GCTTTGGGAGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGAAGTCGGAAATCCT-C---GCTT-CGATTTCAGCCGGAAAGTAT------GTCAT-GGTTTGGTTTGGT-TTT-TTTTTGCA-TTTAT-AACCATTACT-TTTA--CAAAA-AATG-------TTT-----CTCGC-GGAATAATA-CGAT----AAT-----CAAGGTA----A-ATCCACATCAGCAGTTTGT-CAGGATTA-ACC--C--------T-GT------A-GTATGGTCAAA-CACTTC---AACA-ACAA-TTT-GCATAGTGTAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AGAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----TTCAAGAT-TTG-GAAT---------AAT-CTCGT--G-TACGGAATGCATG----CAGTCGATTCGTTTCA-A-------TGTT------ACAAAAGTAAC------GGAGG------------GGCG-AGT---------CGAT-----TTTCAGC--AGATTCAGAT-GG-GGGAG---T-CG---CATAA----T-AATTGCTGAC-ATTC-CTCTGAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TTGTT---TACACAGAATTttaaaagtcatgactagaagaaagtnnnnnnnnnnnnnnnnnnnnnnnnnagtaatctttgtggctccatcgacccaagagtaggaaagtacaaa
gi|6 : G-GGAGGGTCAACTTTCAGCTGCCAGGGGGAGTTGATAACCTC-C---GCGT-GGAATTCGGCAGCAAAGTA-------------GGTT--GC---GT-GTT-TTCTTGCA-TTTGT-AATAATTACT-TTTATACAAAA-GACA-------T-------CGCAC-GGCACAATA-CAAT----AAC-----CAGGATA----C-ATTTATAACAGAAGTTTGC-CAGGATAA-ATC--T--------T-TT------A-G---------A-C-TTTC---GGCT--CTA-CTT-GCAGAATAGCACA-TTTTCGCT-G-TG---TTGAAGACAAAGATATTGAACTACAGAATAA-TTAAA-CATA-AAAA---CTCGTTAGTAGGTAA--TCCAAATGTTTTA-T-----TTTTCATTGATC---------TTCAT---TGTTTA-ACA----ATCAGGAT-TTG-GAA----------AACACTCAT--T-TACGGAATGCATG----GGGTCGATTTGTGTCA-A-------CATT------GTAAAAGTAAT------G----------------------GT---------CGAA-----ATTCGGTCAAGATTCAGATAGG-AGGAA---T-TG---CGATA----C-AAA----------------TAAATGTTT----AAG-GAAATGCATATAAACAGTT--TCATTACACA-A----AAaa
gi|9 : CGTGTACAACTGTT---------ACTTTGGGGGAATCGCTAAAAAAGAAA-CGTGGAGAGTCG-CTTTCAAC-GCCAGGGAGAGTCAGAAATCCCTC---GCTTTCGATTTCGACTGGAAAGTATT-----GTCAA-GGTT-----------TT-TTCTTGCA-TTT-T-AACCATTACTCTTTA--CAAAAAGATG-------TAT-----CTAAC-GGAACAATAACGAC----AAC-----CAAGGTA----A--TCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------AAGTATGGCCAAAACACTTT---CACGCACAA-TTTTGCAGAGTGCAACA-TTTTCGCT-GGTGG--TCGGTGACAAAAACATTGCAGTATAGGATAA-TTAAG-CAGC-AAAC---ATTGATTTTAAGTAA--TCCAAATGTTTTG-A-----TTTTTATttttcaaagtcctcacatgactagaaagtagcaatcactatggctccatcgatcttagagaggaaatacacaa
blockSeqs : TAAAGTGTT AAAAAAGA CC T G A T T T ATC TC GA C TGTCATGGTTTGGTTTGGTT A A CCG TC TA A TATAGGCTAT A A A ATCG TTAAT A A T AA TTCTTAAA G . A A CTAAGCAC T T G T A G CGC C A C C A CAGA AT T ATATA CTTCTATCA ATA T AAACT A C TACACAGTGA T G GG GGCT G GATT . GGAGGGGGAGGGGGGGAGAA TAATA A C . G TAA A CATC A G T ACAA T TTAAA G C T AAT CATTGT AA A AAA C
blockSeqs : . AAAAAG C . A . . T . . G GA G GGTTACCATTTGCGTT . . CT T . . TATGTTGT A . . . . A . . . . . . . . CACGCA . . T . . . G A . A . . A . . . . . . C . . G A C T . G ACA . GAAAAAGGGGGGGGGGG . A T . . . A . . G T ACAT . G . . C TGA A . T . G
blockSeqs : . AAAAAG C . A . . T . . G GA G CCGGTATGTCACGGTT . . AT A . . TGT G . . . . C . . . . . . . . AACAA . . A . . . . A . C . . C . . . . . . N . . T A A C . G ATG . GGAGGGGGGAGT . A . . . . T . . G T ACAT . G . . T TCA T . C . C
blockSeqs : . AAAAAT C . G . . A . . G AG G GGTCACTGATTTT . . AT T . . TAT T . . . . A . . . . . . . . AACAA . . G . . . . T . T . . C . . . . . . A . . T A G G . T ATG . GGAGGGGCGAGT . . . . . . G . . A T TCA . G . . T C A . T . C
blockSeqs : . AAAAAG C . G . . A . . C GA G AGTATGGGCATA . . AA T . . TAC G . . . . C . . . . . . . . AACAA . . G . . . . A . A . . A . . . . . . C . . . A G G . T ATG . GGAGGGGAAGT . . . . . . A . . G T GCA . G . . C A T . C . .
blockSeqs : . . C . A . . A . . C AG G TTGTCAAGGTT . . AT A . . TAT T . . . . C . . . . . . . . AACAA . . C . . . . A . A . . A . . . . . . T . . . A A G . G ACA . GGT . . . . . . A . . T C AA . A . . C T A . T .
blockSeqs : . . . . A . . A . . C GG C TGTCACGGTT . . GT T . . TTT T . . . . A . . . . . . . . GAAA . . T . . . . G . A . . C . . . . . . A . . . A . G . . . . G . . . . . . T . . A . . . . . . T T A . T
blockSeqs : . . . . . T . . C GA G GGTTGCGTG . . T T . . TAT G . . . . C . . . . . . . . GGCA . . G . . . . A . A . . A . . . . T . . . . . . A . . . . . . T A
blockSeqs : . . . . A . . C . . TT . . . . . . T T . . . . A . . . . . . . . GGCT . . C . . . . . . . . . . . . . . .
blockSeqs : . . . G . . . . . .
blockSeqs : . .
blockSeqCons : AAAAAG** NGTCACGGTT****************** TAT************ A***** ****** GACAA**** G*** ACG******** ****** GGAGGGGGGAGT**************************** ***
originalCons : CGTGTACAACCGTT---------ACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGNAATCCC-C---GCTT-CGATTTCGGCCGGAAAGTAN------GTCAC-GGTT--GC---GT-TTT-TTCTTGCA-TTTNT-AACCATTACT-TTTA--CAAAA-GATA-------TAT-----CNCAC-GGAACAATA-CGAT----AAC-----CAAGGTA----A-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTATGGCCAAA-CACTTC---GACA-ACAA-TTT-GCAGAGTGGAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------AATACTCGT--G-TACGGAATGCATG----CGGTCGATTCGTGTCA-A-------CGTT------GCAAAAGTAAC------GGAGG------------GG-G-AGT---------CGAT-----TTTCGGTAAAGATTCAGAT-GG-GGGAG---T-CG---CAAAA----T-AAGTGTTGAC-A-TC-CTCTAAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TCGTT---TACACAGAATT
finalCons : CGTGTACAACCGTT---------ACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGNAATCCC-C---GCTT-CGATTTCGGCCGGAAAGTANGTCACGGTT------------------TT-TTCTTGCA-TTTNT-AACCATTACT-TTTA--CAAAA-GATATAT------------CNCAC-GGAACAATA-CGAT----AAC-----CAAGGTAA-----ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTATGGCCAAA-CACTTCGACAA----CAA-TTT-GCAGAGTGGAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------AATACTCGTG---TACGGAATGCATG----CGGTCGATTCGTGTCAACG--------TT------GCAAAAGTAACGGAGGGGGGAGT----------------------------CGAT-----TTTCGGTAAAGATTCAGAT-GG-GGGAG---T-CG---CAAAA----T-AAGTGTTGAC-A-TC-CTCTAAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TCGTT---TACACAGAATT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AAATCTGAAAACCCAACAGGATATTTCCATGTAACGTTGAAATGAACCCCCTAAATACTAAGTGTTGACAAATTATCGAACATGAAACACTGAAGAAAAATAGAATATCATGGTGTATGTACAGCTGATTAAAAAAAACATTGATACCGGTTAATGAGACCTTCCGAAAAGCTCGTTAAACACGACAATTGCAAATATTTGTGGATCTTGTTGCAGATGAAAAGTATCCAAACGATAATATTCGTTTTGGTTGTTTTTGAAATTGGGAATTACCCGTCAAATTGTACTATGTGCAAGAAACTAAGAGATTTTGGAAGATAGGATACAAATAATTTCATGGGTGATAAAAAAGCGTATCAAATTAAAGATGGGGTTGCTGTTAGAAGATGAACCCTAACTGAATCTTTACTAATAAACGTTGTTATCCATAACTTTAATGTTTGAT
Unaligned ( gi|8 ): TTGTGAATGAACCCTAAGAATACTAAGTGTTGACAAATTAATCGAAACATGAAACACTGAAGAAAAAATAGAATATCATGGTGTATGTACAGCTTGATTAAAAAAAACACTTGATACCGGTTAATGAGACCCTTCCGAAAAGCTCGTTAAATCACGACAATTGCAAATATTTGTGGATCTTGTTGCAGATGAAAAGTATCCAAACGATAATTTTCGTTTTGGTGTTTTTGAAATTGGGAATTACCCGCTCAAATTGTACTTATGTGCAAGAAACTAAGAGATATTTGAAGAGATAGGATACAAATTAATTTTCATGGGTGATAAAAAAGCGTATCAATATTAAAGATGGGGTTGCTGTTAGGAAGTATGAACCACTAACGTTGAATTCTTTACTTAATTATAACTGTTATCCATAACTTTAATGTTTGAT
Unaligned ( gi|12 ): AATGTTGACGAATTATCGAACATGCAAGCAAAATAGAATATAATAATTTATTTACAATGTACATCTAATGAGAAAATTAAAATTCAAAATCATTGATACCGGTAATAATTGATGACAATCCGAAAAGCTAGTTAAATATATTGCTTATAGATTATTAACGTTTTTGTGTCTGGTTGCAGATGGAAAAATATCCTAAAAATAACACTTCCTTCTTGATGTTTCTAGATAGGATTTGGAAATACCTGGTGAAGTGTGCTAGATACAAGAGACTCTGAGATTTTGGAAAATAGGGTACAAATTACTTC
Unaligned ( gi|14 ): ATCGTTGAAAAGCCCACAGCAGATTTCCATATAATTCAAAGACCCTACCGTTGAAAAGAACCCACAAAGTACATGTTGACATATATTCCACACAAAAGCTACACAGAATGCCTGACTTAAATGTGCAACCGATAAATCATCTAGATTCTGCAATACCGGTACTGAATTCTTTCAATATCTTTTAGGAAAGCTAAGTAAAAACGACAAAACGATTGTAAAGAGTATCGCATTTGTGCATCTTTGTAGATTAAATATCCAAAAAAT
Unaligned ( gi|16 ): AACGCTGAAAGCCCACAGGGTATTTTCATATAATTCAACAAGCGGATCTCCACCGTTGAAAATAACTCCCATAAAACACGTTTTCGCAGGTTATCGAACATGCAACACAAAAGATACACAAAAATACCGTGTACAGCTGATAATAACACTTAATTTCAAGACGAAAATTCAACATTACCGGTAACTGAGGACCTTCTTTCAAAAGGTTAGAAAAACACGAT
Unaligned ( gi|17 ): CTCTGGCTCCATCTCTCCATCATGTACAGAAGAACAATACAGAATAGGCCATACAAGAGCAAGAGAAAATGGACTGCTTATTATAATACGGGAGTTCTGAGATCCGTTTTTAAAACGACCGATTCACTCTAAAAGAAAAAAAACCGCTGAAAGTCCACAGGATATTTCCATATAAATCAACAAGAAAATCTCACCGATGAAAAGAACCCCCGAAA
Unaligned ( gi|18 ): AATAGGAATACCATGATATACAATGTACCGGTATGTACAGCTAATGAGAATATTGAAAATCCAAAAACAATTGAATACCGGCCAAATGTACTTCTAATTTTTGTGTTCTTTTAGGCAAATATGAAAAATACCCAAACGATGAACAATTTGTTCTTGCTGTTTTTGAAATATTACATAGAAATTGAC
Unaligned ( gi|20 ): AAAAGCTAAAAGTCCGTATGATATTTTTATGTCATTGAATAAGATGGACTTTTTCAGTTGTGAAATGAGAAACCCCACCACCATCCACCTCTTGAGGCTACATGATAGCGTGTTGACGAATCATCGAACATGCAAAC
Unaligned ( gi|21 ): CATTCAAAATTCCTTTATTCCATGGGTGATCCAAAAAATGCGTGTCTAAGGATGAATCTAACTGAATCTTTAAAGGTAAACTTTAATTTTTAATGTAAAAAATGTTGACATTAAAGAAATACTACAACCAGAAGTAT
Unaligned ( gi|23 ): TGTCTTGTAGCAATTGAAAAATACCCAAACAATAACAATTCGTTCTTGCTGTTTTTGAATCAGAAAATACTCGTCAAAGTGTTCTACATCGGTCATGAAAACAG
Unaligned ( gi|26 ): TAAAGACGAAAAATACAAAAATAGGCCGTGCAAGATCAAAAGAAAATGAACTGCTAATTCATTCGATCCATCTTTTTAAAAAAACC
Alignments
lowQualScore : 222222222 11111111 2222222222222222222222222222222 111111111111111 1111111111 111111 11111111 111111 111111111 111 11111 222222222 11111 3333333333 1111 1111 22222222222 111111 444444444444444444444444 11111 1 11111 11111 11111 111111 111
lowQualScore : 000000000 0 00000000 44 4 3 4 4 2 3 666 55 33 0 3333333333333333333333333333333 4 4 4 4 55 0 55 4 666666666666666 2 4 4 2222222222 333333 8 4 55 44444444 4 111111 4 3 111111111 3 3 1 4 4 4 111 2 4 1 4 4 9999 66 4 11111 000000000 888 5 22222 5 5 5555555555 2 4 0000 0000 0 2 11111111111 444444 3 0 0 888888888888888888888888 2 55 11111 0 2 8 777 4 777 2 8888 4 5 2 77777 4 0 22222 5 5 1 0 33333 000000 66 1 000 2
lowQualScore : ......... . ........ .. . . . . . . ... .. .. . ............................... . . . . .. . .. . ............... . . . .......... ...... . . .. ........ . ...... . . ......... . . . . . . ... . . . . . .... .. . ..... ......... ... . ..... . . .......... . . .... .... . . ........... ...... . . . ........................ . .. ..... . . . ... . ... . .... . . . ..... . . ..... . . . . ..... ...... .. . ... .
lowQualScore : 000000000 2 11111111 66 0 9 0 0 3 6 444 00 88 5 6666666666666666666666666666666 0 0 9 0 11 9 55 0 111111111111111 4 0 0 5555555555 111111 0 0 55 55555555 0 555555 0 6 888888888 3 3 6 0 0 0 000 4 4 9 4 4 7777 99 4 11111 000000000 888 0 22222 0 0 4444444444 2 7 7777 6666 2 5 88888888888 444444 2 2 1 222222222222222222222222 1 22 11111 9 0 0 000 0 000 6 5555 0 7 2 99999 4 1 99999 0 0 1 8 99999 777777 99 1 000 5
consensus : CGTGTACAACCGTT---------ACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGNAATCCC-C---GCTT-CGATTTCGGCCGGAAAGTAN------GTCA----------CGG---T---TTTTTC-TTGCA-TTTNT-AACCATTACT-TTTA--CAAAA-GATA-------TAT-----CNCAC-GGAACAATA-CGA-----T----AACCAAGGTA----A-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTATGGCCAAA-CACTTC---GACA-ACAA-TTT-GCAGAGTGGAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------AATACTCGT--G-TACGGAATGCATG----CGGTCGATTCGTGTCA-A-------CGTT------GCAAAAGTAACG-----GA-------GGGG------GGAG-TCGAT-----TTTCGGTAAAGATTCAGAT-GG-GGGAG---T-CG---CAAAA----T-AAGTGTTGAC-A-TC-CTCTAAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TCGTT---TACACAGAATT
Reference ( family-2479 ) : CGTGTACAACCGTT---------ACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGNAATCCC-C---GCTT-CGATTTCGGCCGGAAAGTAN------GTCA----------CGG---T---TTTTTC-TTGCA-TTTNT-AACCATTACT-TTTA--CAAAA-GATA-------TAT-----CNCAC-GGAACAATA-CGA-----T----AACCAAGGTA----A-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTATGGCCAAA-CACTTC---GACA-ACAA-TTT-GCAGAGTGGAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------AATACTCGT--G-TACGGAATGCATG----CGGTCGATTCGTGTCA-A-------CGTT------GCAAAAGTAACG-----GA-------GGGG------GGAG-TCGAT-----TTTCGGTAAAGATTCAGAT-GG-GGGAG---T-CG---CAAAA----T-AAGTGTTGAC-A-TC-CTCTAAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TCGTT---TACACAGAATT
gi|1 : GTGCACAACCATT---------ACTTT-----------------------TG-GGGGAGTCG-ATTTTAAC-GCCAGGGGGAGTCGGTAGTTTC-C---GCTT-GGATATCCGCAGTACAGTAG------ATTA----------CCG---TA--TTTTTC-TTGCG-TTTCT-AACCATCACT-TT-----------------------------------------ATG-CGA-----T----AGCCAAGGTACTGTACATATACATCAGCAGTTTGCATTAGGTTA-AGC--T--------T-CTTACTATA-GTATGGTCAAA-TATTTC---TGCA--CAA-TTC-GCAGAATGGAAAA-TATTTGCT-T-TG---TCGATAACAAAAACATTGCATTAAAGAATAA-ATGCG-CAGC-AAAT---TTTGATAGTACGTAA--TCCAAATGTTTTA-C-----TTT-AA-----C---------TTCAT---TGTTTA-ACA----CCCAGGAT-TTT-GAA----------AATTTTCGTTTA-TACGAAATACATG----GGGTCGATACGTGTCA-AATGTCAATGTCAATTTAGCAAAAGTAACAAAGGTGA-------GGGGTGGGTGGGTG-TCGAT-----TTGCGGTAAAGATTCTGAT-GG-GGGGGGGAT-CG---CAAAA----T-AAGTGTTGATAA-TC-CTCTAAATGTTT----AAT-AAAATG-------GCATAT--T-----TAAA-A----AAAAATCAGTT--TCGTT---TACA
gi|10 : attCGGGGGGA-----TAACCTC-CATCGTTT-GGAATTC--CCAGTAAGTAT------G--------------GG---CATATTATCC-TTGAAATTTCCGAACCATTGC----------AAA-GAAA-------TATGTTGTCAAACAGGAACAATA-CCA-----TATCGAACCA---TA----A-GTACATATCGAGAATTTGC-CTGCACCATACCAAT--------CGCT------A-GTATAAC--AA-CACTTCCTAAGCA-CCCGTTTT-GCATAATAGAACATTTTTCGCTAG-TGCGCTCGTTGACAAA----------TACCGAA-AA-TTACGCCAACAAAACCAGATT-ATGCTAAGTAAATCCCCAATGTTTTT-TATATACTTTCATTGTCCCTTCTATCATTCATATATTTTTATACAAAACTTCAGGATATTGCGA-----------AATTC-CGT--T-TACGGAataacatatatatatatatatattcaaagccatgacttgaaaaaaagcattctttgtggctccattgacctaacctattaagagaagtaaaatatataatagtccattcaagatcgagagaaaatgaattgtttgttaatctattcgattcaacaaaaaaatgtcttctcccaacaccaacccccctccccaaaacccccccaaaagttgaaagcccgcaagatatttccatgtgatcgaacaaaaggatcacctttgttgaaatgcacccccaaaattaaggttatgtgtttgcgaattatcgaacttggtaacacagaagaaaaattagaataccatgatttaatatggtatagctgagaagatgaaaatccaaaaacatcgataccagttagttaaactcgataattgcgaataaagtattacaattttttagtcttgtacatgtagcagatgaaaaataccctaagttaacgttgacatttcgttcttgttttcgaatgcaagaaactaagaaattttggaagaaaggatacaaattgctaaagttcattcaaaattccttgatttcatgggtgatccaaaaattgcgcgccaaattaaagatgtgcatggttgttactggaggatgaattctaacggaatctttacaaataaactttgtagtccctagctttaatgtttaattcaagtaatgtcgaccttaaaacatactaaaccagaagtat
gi|11 : gTACTCCT--GGTTTGGAATGCATGGGCTCGATCGATCCATGCCA-A-------CATT------GCA-----AACG---------------------------------------------TAAAG-----GAG-GG-GAGAG---T-CG---CGAAA----T-AAGTGTTGACAA-TC-CTCTAAATGTTTTTAAAAC-AAAATG-ATATAAATATAT--C--TTATATACATTGTAAACAACAGTT--AAGTTAAATACACAAACTTta
gi|13 : AAG--AA-CG-GA--------CTT---AC-GCCAGGAGGATTCGATAATCTC-C---GCTT-GGAAATCGACAGCAAAGTAG------GTTA----------CCA---T---TTG--CGTTGCC-TCTCT-AACCATTACT-TTTG--CAAAA-GATATATAGGCTAT-----CACAC-G--ACAATA-AGA-----T-----ACTAAGGT-----A-ATCT-CATCAGCAGTTTGT-CTGGATTA-ACC--TTTCTTAAAT-TT------A-GTATAGCCAAA-CACTTC---GA-A-ACCA-TTC-Gtcaaagccatgactaggcaaacttaatatagaatagttcattcacagattaagagaaaatggggtacagagttaaattaatcaagattgaaattaacgtttcctctggaatgaaatcaaatgttatcaacttatacaaagtacatgtac
gi|15 : CGTGCACAACTGTTTAAAGTGTTACTTTGGGGGAGTCGCTAAAAAG--AA-CG-GTGGAGTCG-CTTTTAAC-GCCAGGGG-AGTCAATAATCTC-A---G------ATT-------GAA-------------------------------T---TTTTT--------TTTCT-AACCATTACA-TCTA--CAAAA-GATA-------TGT-----CGCAC-AGAACAATG-CGA-----T----AGCCAAGGTA----C-ATATACATCAGCAGTTTGTATTGGATTA-AGC--T--------T-CT------A-GTATGGTCAAA-TATTTC---GGC--ACAA-TTT-GCAGAATaaaaaaaaattgcatgtgaaaaatagcaatataggttatcaaattattctatatgctaaaaaaaattttatag
gi|19 : cGTTTTA-T-----TTTTCATTGTTC---------TTCAT---AGTTTA-ACA----CTCGAGAT-TTG---AG---------AATACTC-T--C-TAGGGAATGCATG----AAATCGATTCGTGTCA-----------TT------GTA----TAACG-----GA--------GGG------GAAG-TCGCT-----TGTCGGTAAAGATTCAGAT-AGCGGGAG---T-TG---CAAAA----T-AAGTGTTGAC-ATTC-CTCTAAATGTTtcaaaatc
gi|2 : tCGTGTACAACCGTT---------ACTT----------------------A--G-GGAGAGTCG-CTTTCAAC-GCCAGGGGGAGTCGGAAATTCT-C---GCTT-CGATTTCGACCGGAAAGTAT------GTCA----------CGG---T---TTTGTC-TTGCA-TTTAT-AACCATTACT-TTTA--CAAAA-GATG-------TAT-----CTCAC-GGAACAGTA-CGA-----C----AACCAAGGTA----A-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-CTATGATCAAA-CACTTC---AACA-ACAA-TTT-GCATGGTGTAACA-TTTTCGCT-G-TG---ACGGTGACAAACACATTGCATTATAGAATAA-TTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACGTTTTGTT-----TTTTCATTGTTC---------TTCNN---NNNNNN-NNN----NNNNNNNN-NNN-NNNTACACAGTGAAATACT--T--G-TACGGAA-GCATG----CGGT--ATT-GT-TCAGA-------TTTT------ATCAAAG-AACG-----GAGGGGGAGGGGG------GGAGAACGATTAATATTTTAGCAAA-AGTC-GAT-GG-GG--A---T-CG---CATAA----T-AA-TG-TGA--A-CC-CT---GATG-------GAG-AGAA-G-ACAT-AACATA---A--TTGTAC--A----AAGCATCAGTTAATTGTT---TACA---AATT
gi|22 : acTTCGGTAAAGATTCAGAT-TATAAGAG---A-TG---CAGAA----T-AAGTGTCGTC-A-TTTCTCTAAAT-CTT----GAT-AAAATG-ATATAAACATCTAAT--TTGTATA-T----AAATATCAGTT--TCAAT---TACACttaaaagtcagacccagaaaagcaatcattgtgccatcgtactccatagagaaggaagtacaaaatatcaataaaatatgatttgattaccctcaaaaaatcccgttgaattgtaaaaatttcgacagcgaaagctaaccccgtatgattttttatgtgcattgaataaagacgtccctgaaggaccccagcgggctacgtgtacgaatcatagaaattagaacatgaaacaatgtacaggtagaacagtgatgagatttgataatccaaacatgaaccggtcatgaatggaatttgtactcaatttgtgtgtttggttacatgaaaataacaaacgatacattcggttcttgctgtttttgaatcaaaataccgaaagttttctatcccatgtcagataaaca
gi|24 : gaaaCGTGTACAACCTTT---------ACTTTGGGGGAGTCCCTAAAAAG--AACCT-GGAGAGTTG-CTTTCAAC-GCCAGGAAGAG-------------------T-CGATTTCGACCGGAAAGTAT------GTCA----------CGG---T---Tattgatatttagaaatgac
gi|25 : acATGGTCAAA-CACTTT---AACA-ACAA-TTT-GCATGGTGAAACA-TTTTCGCT-G-TG---TCGGTGAC-ACAGCATTACATTATAGAATAA-TTCCG-CAGC-AAAC---CTT
gi|27 : AT-----TTTCATTAAAGATTCAGACAGG-GGGAG---T-GG---CAAAACATCT-AAATGT
gi|28 : -ACGA-TTT-GCAGAATGGA-CA-TTTTCGCT-G-TG---TCCGTAACAAAAgtacagtatgtacgcattttcatac
gi|29 : atacactctagtacaggcTGAACATAT--T--TTGTACA-A----AAGCATCAGTT--TTG
gi|3 : CGTGTATAACCGTT---------ACATTGAGAGAGTCGCTAAAAAT--AA-CG-GGGGAGTCG-CTCTCAAT-GCCATTGGGAGTCGGAAATCCT-C---GCTT-CGATTTCAGCCGGAAGGCAG------GTCA----------CTGATTT---TTTTTT-TTGCA-TTTAT-GACCATTGTT-TTAA--CAAAC-GATA-------TAC-----CGCAC-GGAACAATA-CGATAATTT----AATCGAGGTA----C-ATCTACATCAGCAGGTTTT-CTGGATTA-ACC--C--------T-CT------A-GTATGGCCAAA-C-------------ACAA-TTT-GCAGAATGGAACA-TTTTTGC----TG---TCGGTGACAAATACATTGCATTATAGAATAA-TTATG-CAGC-AAAT---CTTGATAGTAAGCAA--TCCAAACGTTTCA-T-----ATTTTATTGTTT---------TTTAT---TGTTTA-ACA----ATCAGTAT-TTG-GAA----------AATACTAAT--G-TACAGATTGTATG----CAGTCGATTCGTGACA-A-------TGTT------GCAAATGTAACGAAAAAGG-------GGGG------GGGG-GCGAT-----TTTTGGCAAAAATTCAGAA-GG-AGGTG---TGTGTAACAAAA----TAAAGCGTTGGC-A-TA-TTTTAAGTGTTT-----ATGAAAATG-ATATAAATATAT--TGATTGTATG-T----AAACATCAGTT--TCGTT---TACAGAGAA
gi|4 : acCGTGTACAACCGTT---------ACTTTGGGGGAGTCGCT--------------------------TTCAAC-GCCAGGGGGAGTCGGAAATCCT-C---GCTT-CGATTTCGACCGGAAAGTACCGGTATGTCA----------CGG---T---TTTTTC-TTGCA-TTTAA-AACCATTACA-TTTA--CAAAA-GATA-------TAT-----CTCAC-GGAACAATA-CGA-----T----AACCAAGGTA----C-ATCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------A-GTGTGGCCACA-CACTTC---AACA-ACAA-CTT-GCAGAGTGCAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATAGCATTATAGGATAAATTAAG-CAGC-AAAC---ATTGATAGTAAGTAA--TCCAAACATTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----CTCAGGAT-TTG-GAAT---------A-TACTCGT--G-TACGGATTGCATG----CGGTTGATTTGTTTCA-A-------TGTT------ACAAAAGTAACG-----GA-------GGGG------GGAG-TCGAT-----TTTCAGCAAAGGTGCAGATAGG-GGGAG---T-CG---CA-------T-AA------------C-CTCTGAATGTTT----GAT-AAAATG-ACATACACATAT--T--TTGTACA-A----AAGCATCAGTT--TTATT---TACACAGAATTatgattagagaaaggcatacaccatggcttcatttattcgttacagaggaaatataaaaaataggtcatacaa
gi|5 : acCGTGTACAACCGTT---------GCTTTGGGAGAGTCGCTAAAAAG--AA-CG-GGGGAGTCG-CTTTCAAC-GCCAGGGGAAGTCGGAAATCCT-C---GCTT-CGATTTCAGCCGGAAAGTAT------GTCATGGTTTGGTTTGG---T---TTTTTT-TTGCA-TTTAT-AACCATTACT-TTTA--CAAAA-AATG-------TTT-----CTCGC-GGAATAATA-CGA-----T----AATCAAGGTA----A-ATCCACATCAGCAGTTTGT-CAGGATTA-ACC--C--------T-GT------A-GTATGGTCAAA-CACTTC---AACA-ACAA-TTT-GCATAGTGTAACA-TTTTCGCT-G-TG---TCGGTGACAAAAACATTGCATTATAGAATAA-TTAAG-CAGC-AGAC---ATTGATAGTAAGTAA--TCCAAACGTTTTG-T-----TTTTCATTGTTC---------TTCAT---TGTTTA-ACA----TTCAAGAT-TTG-GAAT---------AAT-CTCGT--G-TACGGAATGCATG----CAGTCGATTCGTTTCA-A-------TGTT------ACAAAAGTAACG-----GA-------GGGG------CGAG-TCGAT-----TTTCAGC--AGATTCAGAT-GG-GGGAG---T-CG---CATAA----T-AATTGCTGAC-ATTC-CTCTGAATGTTT----GAT-AAAATG-ACATAAACATAT--T--TTGTACA-A----AAGCATCAGTT--TTGTT---TACACAGAATTttaaaagtcatgactagaagaaagtnnnnnnnnnnnnnnnnnnnnnnnnnagtaatctttgtggctccatcgacccaagagtaggaaagtacaaa
gi|6 : G-GGAGGGTCAACTTTCAGCTGCCAGGGGGAGTTGATAACCTC-C---GCGT-GGAATTCGGCAGCAAAGTAG------GTTG----------CG----T---GTTTTC-TTGCA-TTTGT-AATAATTACT-TTTATACAAAA-GACA-------T-------CGCAC-GGCACAATA-CAA-----T----AACCAGGATA----C-ATTTATAACAGAAGTTTGC-CAGGATAA-ATC--T--------T-TT------A-G---------A-C-TTTC---GGCT--CTA-CTT-GCAGAATAGCACA-TTTTCGCT-G-TG---TTGAAGACAAAGATATTGAACTACAGAATAA-TTAAA-CATA-AAAA---CTCGTTAGTAGGTAA--TCCAAATGTTTTA-T-----TTTTCATTGATC---------TTCAT---TGTTTA-ACA----ATCAGGAT-TTG-GAA----------AACACTCAT--T-TACGGAATGCATG----GGGTCGATTTGTGTCA-A-------CATT------GTAAAAGTAATG---------------------------G-TCGAA-----ATTCGGTCAAGATTCAGATAGG-AGGAA---T-TG---CGATA----C-AAA----------------TAAATGTTT----AAG-GAAATGCATATAAACAGTT--TCATTACACA-A----AAaa
gi|9 : CGTGTACAACTGTT---------ACTTTGGGGGAATCGCTAAAAAAGAAA-CGTGGAGAGTCG-CTTTCAAC-GCCAGGGAGAGTCAGAAATCCCTC---GCTTTCGATTTCGACTGGAAAGTATT-----GTCA----------AGG---T---TTTTTC-TTGCA-TTT-T-AACCATTACTCTTTA--CAAAAAGATG-------TAT-----CTAAC-GGAACAATAACGA-----C----AACCAAGGTA----A--TCTACATCAGCAGTTTGT-CTGGATTA-ACC--T--------T-CT------AAGTATGGCCAAAACACTTT---CACGCACAA-TTTTGCAGAGTGCAACA-TTTTCGCT-GGTGG--TCGGTGACAAAAACATTGCAGTATAGGATAA-TTAAG-CAGC-AAAC---ATTGATTTTAAGTAA--TCCAAATGTTTTG-A-----TTTTTATttttcaaagtcctcacatgactagaaagtagcaatcactatggctccatcgatcttagagaggaaatacacaa
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AAATCTGAAAACCCAACAGGATATTTCCATGTAACGTTGAAATGAACCCCCTAAATACTAAGTGTTGACAAATTATCGAACATGAAACACTGAAGAAAAATAGAATATCATGGTGTATGTACAGCTGATTAAAAAAAACATTGATACCGGTTAATGAGACCTTCCGAAAAGCTCGTTAAACACGACAATTGCAAATATTTGTGGATCTTGTTGCAGATGAAAAGTATCCAAACGATAATATTCGTTTTGGTTGTTTTTGAAATTGGGAATTACCCGTCAAATTGTACTATGTGCAAGAAACTAAGAGATTTTGGAAGATAGGATACAAATAATTTCATGGGTGATAAAAAAGCGTATCAAATTAAAGATGGGGTTGCTGTTAGAAGATGAACCCTAACTGAATCTTTACTAATAAACGTTGTTATCCATAACTTTAATGTTTGAT
Unaligned ( gi|8 ): TTGTGAATGAACCCTAAGAATACTAAGTGTTGACAAATTAATCGAAACATGAAACACTGAAGAAAAAATAGAATATCATGGTGTATGTACAGCTTGATTAAAAAAAACACTTGATACCGGTTAATGAGACCCTTCCGAAAAGCTCGTTAAATCACGACAATTGCAAATATTTGTGGATCTTGTTGCAGATGAAAAGTATCCAAACGATAATTTTCGTTTTGGTGTTTTTGAAATTGGGAATTACCCGCTCAAATTGTACTTATGTGCAAGAAACTAAGAGATATTTGAAGAGATAGGATACAAATTAATTTTCATGGGTGATAAAAAAGCGTATCAATATTAAAGATGGGGTTGCTGTTAGGAAGTATGAACCACTAACGTTGAATTCTTTACTTAATTATAACTGTTATCCATAACTTTAATGTTTGAT
Unaligned ( gi|12 ): AATGTTGACGAATTATCGAACATGCAAGCAAAATAGAATATAATAATTTATTTACAATGTACATCTAATGAGAAAATTAAAATTCAAAATCATTGATACCGGTAATAATTGATGACAATCCGAAAAGCTAGTTAAATATATTGCTTATAGATTATTAACGTTTTTGTGTCTGGTTGCAGATGGAAAAATATCCTAAAAATAACACTTCCTTCTTGATGTTTCTAGATAGGATTTGGAAATACCTGGTGAAGTGTGCTAGATACAAGAGACTCTGAGATTTTGGAAAATAGGGTACAAATTACTTC
Unaligned ( gi|14 ): ATCGTTGAAAAGCCCACAGCAGATTTCCATATAATTCAAAGACCCTACCGTTGAAAAGAACCCACAAAGTACATGTTGACATATATTCCACACAAAAGCTACACAGAATGCCTGACTTAAATGTGCAACCGATAAATCATCTAGATTCTGCAATACCGGTACTGAATTCTTTCAATATCTTTTAGGAAAGCTAAGTAAAAACGACAAAACGATTGTAAAGAGTATCGCATTTGTGCATCTTTGTAGATTAAATATCCAAAAAAT
Unaligned ( gi|16 ): AACGCTGAAAGCCCACAGGGTATTTTCATATAATTCAACAAGCGGATCTCCACCGTTGAAAATAACTCCCATAAAACACGTTTTCGCAGGTTATCGAACATGCAACACAAAAGATACACAAAAATACCGTGTACAGCTGATAATAACACTTAATTTCAAGACGAAAATTCAACATTACCGGTAACTGAGGACCTTCTTTCAAAAGGTTAGAAAAACACGAT
Unaligned ( gi|17 ): CTCTGGCTCCATCTCTCCATCATGTACAGAAGAACAATACAGAATAGGCCATACAAGAGCAAGAGAAAATGGACTGCTTATTATAATACGGGAGTTCTGAGATCCGTTTTTAAAACGACCGATTCACTCTAAAAGAAAAAAAACCGCTGAAAGTCCACAGGATATTTCCATATAAATCAACAAGAAAATCTCACCGATGAAAAGAACCCCCGAAA
Unaligned ( gi|18 ): AATAGGAATACCATGATATACAATGTACCGGTATGTACAGCTAATGAGAATATTGAAAATCCAAAAACAATTGAATACCGGCCAAATGTACTTCTAATTTTTGTGTTCTTTTAGGCAAATATGAAAAATACCCAAACGATGAACAATTTGTTCTTGCTGTTTTTGAAATATTACATAGAAATTGAC
Unaligned ( gi|20 ): AAAAGCTAAAAGTCCGTATGATATTTTTATGTCATTGAATAAGATGGACTTTTTCAGTTGTGAAATGAGAAACCCCACCACCATCCACCTCTTGAGGCTACATGATAGCGTGTTGACGAATCATCGAACATGCAAAC
Unaligned ( gi|21 ): CATTCAAAATTCCTTTATTCCATGGGTGATCCAAAAAATGCGTGTCTAAGGATGAATCTAACTGAATCTTTAAAGGTAAACTTTAATTTTTAATGTAAAAAATGTTGACATTAAAGAAATACTACAACCAGAAGTAT
Unaligned ( gi|23 ): TGTCTTGTAGCAATTGAAAAATACCCAAACAATAACAATTCGTTCTTGCTGTTTTTGAATCAGAAAATACTCGTCAAAGTGTTCTACATCGGTCATGAAAACAG
Unaligned ( gi|26 ): TAAAGACGAAAAATACAAAAATAGGCCGTGCAAGATCAAAAGAAAATGAACTGCTAATTCATTCGATCCATCTTTTTAAAAAAACC