lowQualScore : 222 1 11111 11 22222 1 444444 22 11 555555 11 111 1111 22 111 111 11111 444444 111 11 111111 1 22222 1111 1111 11 3333 1 11111 1111 111 1 222222222222 1 1111 11111111111111111111 222222222 333333 3333333 1111 33333 11 222 11 1 1 11 1111111 444 11111 5555555555555555555555 11 11111
lowQualScore : 3 6 555 0 6 6 66666 55 6 6 99 66666 3 6 6 88 6 6 888888 55 6 00 666666 55 6 99 99 111 99 5555 44 000 999 66666 3 6 888 8 88 8 8 000000 8 8 8 6 6 6 1 111 5 77 000000 5 5 77 5 5 7 5 00000 5 5 2222 77 1111 5 5 5 33 3333 5 7 5 44444 7777 000 1 5 5 1 5 77 5 5 5 777 77 999999999999 5 1 777 5555 6 5 66 1 99999999999999999999 66 333333333 3 888 5 9999 5 999999 5 0 55 0000000 5 5 5 5 5 5 5 2 0000 5 5 66 8 8 44444 00 1 4 66 4 4 4 222 66 33 5 5 66 66 5 66 1 1 0 5 5 5 55 11 5 5 0000000 5 0 0 66 5 5 66 5 6 88 222 5 5 5 22222 1 5 4444444444444444444444 33 1 4 0 0 55 4 4 99 4 00000 8 4 55 5
lowQualScore : . . ... . . . ..... .. . . .. ..... . . . .. . . ...... .. . .. ...... .. . .. .. ... .. .... .. ... ... ..... . . ... . .. . . ...... . . . . . . . ... . .. ...... . . .. . . . . ..... . . .... .. .... . . . .. .... . . . ..... .... ... . . . . . .. . . . ... .. ............ . . ... .... . . .. . .................... .. ......... . ... . .... . ...... . . .. ....... . . . . . . . . .... . . .. . . ..... .. . . .. . . . ... .. .. . . .. .. . .. . . . . . . .. .. . . ....... . . . .. . . .. . . .. ... . . . ..... . . ...................... .. . . . . .. . . .. . ..... . . .. .
lowQualScore : 5 7 000 8 7 7 77777 88 7 7 22 00000 3 7 7 33 7 7 777777 88 7 22 000000 88 0 22 22 777 22 0000 33 000 333 22222 3 7 777 0 88 0 0 000000 0 0 0 7 7 7 7 999 7 11 111111 7 7 99 7 7 1 7 00000 7 7 1111 99 7777 7 7 7 66 4444 7 1 7 44444 9999 000 4 7 7 4 7 66 7 7 7 444 99 666666666666 7 4 222 0000 4 0 44 4 66666666666666666666 99 222222222 2 888 0 4444 0 666666 7 4 99 0000000 7 7 7 7 7 7 7 0 6666 0 0 11 9 0 55555 66 8 4 11 4 4 4 999 99 11 9 0 99 99 0 99 9 4 0 0 0 0 11 99 0 0 6666666 0 1 1 99 0 0 99 0 5 22 666 0 0 0 55555 4 7 3333333333333333333333 66 2 0 6 8 55 0 0 55 0 00000 0 0 55 0
consensus : ATTTATGCTC-AGATTAA-TGTTTT-C-GG-----GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAAAAT-AAT-AA-TTTGCATATCAA-TG-ATTGCTTC-T-AAT-GAAATACC----AAAGTATT-GATAT--CTT--AACA---TTT--AACT---TTTGCCT---TTT--CTT-TGGGGGGAAATAGACAT-G-A-TCTGTTAGTAG-TAG-TTTA-GATG-TGAAAATTTTT-GAATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-T-ATCG-AA-CTCA--C---T-AAC-ATA--CCAA-T-ATTT-TTT-----GT-TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--T-CA-TAGT-AA-A-TA--AA----TA---AA-AT-C-TTGTT-ACA-ATG-AG-TA-T-ATAT--T-T----------T-CGAC-CA--TTTTCCT---TTGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTT--A--GA--GTAC---TGAGGAAA-TT----CGG-A------TTAAATT-TTGGGTNAN------TT-GTC-TTGGAGTT-ACA-T-GAAAA-A-TATTTT----C-A-C--A-TCAT-AATGTC-C--GCACA--TATACTA-C--TT-GTA-TG-ATGG-CCAT--TA-GANATATTC-AGA--TT--ATA-CCC--AATNTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--ATTTT-AGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGGG-TTGTTTCCA--TGGAAACGAATTC-AC-TAAC-A-----TATGTAAAATTT-GTCAT----------------N-----TTTCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
Reference ( gi|5 ) : ATTTATGTTC-AGATTAC-CGTTGT-C-GG-----GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TGTTTTG-TT-ATCT-GGAAAAAAT-AAT-AA-TTTGCATATCAA-TGCATTGCTTA-T-AAT-AAAATA-T----AAAGTATT-AATGT--CTT--AACA---TTT--AACC---TTTCGCT---TTT--TTT-TGGTGGGAAATAGGCAT-G-A-TCTGTTAGTAG-TAG-TTTA-GATG-T-AGA--TTTT-GAATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-T-ATCG-AA-CTCA--C---T-AAC-ATA--CCAA-T-A-TT-TTT-----GT-TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--C-CA-TAGT-AA-A-TA--AA----TA---AA-AT-C-TTGTT-ACA-ATG-AG-TA-T-ACAT--T-T----------T-TGAC-CA--TTTTCCT---TTGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTT--A--GA--GTAC---TGAGGAAA-TT----CGG-AC-----TTAAATT-TTGGGTTAA------TT-GTC-TTGGAGTT-ACA-T-GAAAA-A-TATTTT----C-A-C--A-TCAT-AATGT--T--GCACA--TATACTA-C--TT-GTA-TG-AT-G-CCAT--TA-GAAATATTC-AAA--TT--ATA-CTC--AATTTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--ATTTT-AGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGAGG-TTGTTTCCAGGTGGAAACGAATTC-AC-TAAC-A-----TATGTAAAATTT-GTCAT----------------A-----TTTCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|2 : ATTTATGCTC-AGATTAAATGTTTT-C-GG-----GGG-AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TTTATCTTGGAAAAAAT-GAT-AA-TTTGCATAT--A-TCAATTCCTTC-T-AAT-GAAATA-CCA--AAAGTATT-ATTAT--CTT--A-CA---TTTTTAACT---TTT-GCT---TTTACTTTGTGGGGGAAAATAGACAT-A-T-TCTGTTAGTAG-TAG-TTTAAGATG-TGAAA--TTTT-GAATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-TTATCG-AAACTCA--C---T-AAC-ATA--CCAA-T-A-TT-TTTT----GT-TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AAACT-CA-TAGT-AA-AATAT-AA----TA---CATAT-C-TTGTT-ACA-ATG-AG-TA-T-ATATATTGT----------T-TGACGCA--TTTTCCT---T-GAA-AAC-TCTA-TC-CTC-AAGA-T-GAC-CAT--TTTTT--G--AG--GTAC---TGAGGATA-TT----CGG-ATA----TTAAATTATTGAGTAAA------TTTGTC-TTGGAGTT-ACA-T-GAAAA-A-TTTTTT----CTA-C--AATCATGAATGTC-T--GCACA--TCTACTA-C--TT-TTAATG-TG-G-CCAT--TA-GAAATATTC-AAA--TT--ATAATTC--AATGTGTT-G-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--ATTTTTAGCGATTG---G---GATG-ATTTTCAA--CA-T-T--ACTA-GTGTCATGGG-TTGTTTCCATGGGAAAATGAATTC-AC-TAAC-A-----TATGTAAAAGTT-GTCAT----------------A-----TTTCAAACAGT-GCGAGTCCT-CTTTTCCATGAAAA--AATAAG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCC
gi|4 : aATTTACGT-C-AGAT-AC-CGTTTT-CAGG-----GG--AAA-ACAGAGGAAATTCGG-CTAGAGTGCT-TACA--ATTG---T-TTTTGTTT-ATCT-GGAAAAAAA-AAT-AA-TTGGCATATCA-----ATTGCTTC-T-AACGAAAATATT----AAAGTATTCGATAT--CGT--AACA---TTT--AACC---TTTGCCTAAATTT--CTT-TGTGGGGAAATAGGC-T-G-A-TCTGTTAGTAG-TAG--TTA-GATG-T-GAAATTTTT-GAATGAT-CT-CAAATTA-ACTTTC-G-TCTA-CATATCTTTTAT-ATCG-AA--TCC--C---TAAAC-ATA--CCAA-T-ATTT-TTT-----GT-TG-G--C-AGATA--GCTATA----A-T-ACCATCT-TT--AA--CGCA-TAGTAAA-A-AA--AA----TA---AA-ATAC-TTG-T-ACA-TTG-AG-TA-T-ATAT--T-T----------T-TGAC-CA--TTTTCC----TTGAA-AAC-TCT-ATT-CTC--A-A-T-GA--CAC--TTTTT--A--GAAGGTAC---TGAGGAAA-TT----CGG-A------TTAAATT-TTTGGGTAAT-----TT-GTC-TTGGAGTT-ACA-T-GAAAA-A-TA-TTT----C-A-C--A-TCAT-AATGTTCT--GCTCA--TA-ACTA-C--TT-GTA-TG-ATGG-CCAT--TA-GATATATTC-AGA--TT--ATA-CCC--AA-TTGTTTG-TTGTA-CGTATC-TTTGG-ATCTCCAA-CTGCT--A--ATTTT-AGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--GCTA-GGTTCAG-GG-TTGTTTCCA--TGGAAACGAATTC-A--TAAC-ATAAATTATATAAAATTT-GTCAT----------------T-----TTTCAAACAA--GCGAGACCT-CTTTTCCATGAAAA--AAT-AGAATTTT--AGGAAAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|3 : aATTTATGCTC-AGATTAA-TGTTTT-C-GG-----GG--AAA-ACAGAAGAAATTCGGGCTAGAGTGCT-TACA--AGTGGTTTTTTTTT-TT-ATCT-GG-AAAAAT--AT-AA-TTTGCATATCAA-TG---TGCTTCTT-AAT-GAAATACC----AAAGTATT-GATATTCTTT--AACA---CTT--AACT---TTTGCCT---TTT--CTT-TTGTGGG-AATAGACAT-GAA-TCTGTTAGTAG-TAGTTTTA-GATG-TGAAA--TTTG-AAATGAT-CTCCAAATTA-ATTTTC-G-TCGATTATATTTTTT-A-ATCG-AA-CTCA--C---T-AATAATA--CCAA-T-ATTT-TTT-----GCATA-GTTC-AG-TAGCGCTATAG---ATT-ACCATCT-TTGAAA--T-CA-TAGTAAA-A-TA--AA----TA---AA-AT-CTTTGTT-ACA-A-G-AGTTG-T-ATA---T-T----------T-TGAC-CA--ATTTCC----TGGAA-AAC-TCT-ATC-CTC-AA-ATT-GACAAAT--GTTTT--A--GAG-GTAC---TGAGGAAATTT----CGG-A------TTAAA---TTGGGAAAT------TT-GTC-TTGGAGTT-ACA-TGGAAAA-A-TAGTTT----C-A-A--T-TCAT-AATGTC-T--GCACAT-TATACTAGC--TT-GTA-TG-ATGG-TCAT--TATGAAATATTC-AAAATTT--ATA-CTC--AATGTGTTTGTTTGTAGCATATC-TTTGGAATCTCCAA-CTGCTA-A--A-TTT-AGCG-TTG---G---G-TGCATTTTCAAGCCATT-T--ACTA-GGTTCAGGGG--TGTTTCCA--TGGAAACGAATTCAAC-TAA--A-----TAT-T--AATTTGGTCAT----------------A-----TTTCAAACAG--GCG-GTCCT-TTTTTCCATG-AAA--AAT-AG-ATTTT--AGG--AAATCT-----TGT-TA--TT--TCATCTCAG
gi|1 : aATTTATGCTCGAGATTAA-TGTTCTTC-GG-----GGGAAAA-ACAGAGGAAATTCGGGCTAGAGTGCTATACA--ATTG---TTTTTTGTTT-ATCT-GGAAAAAATGAATAAA-TTTGCTAATCAACTG--TTCCTTC-TGAAT-GAAATA-CGCGAAAAGTATT--ATAT--CTT---ACATTTTTT--AACT---TTTGCCT---TTTACTTTGTGGGGGAAAATAGACAT-G-ATTCTGTTAGTAGATAG-TTTA-AATG-T-GAAATTTTT-GAAT-AT-CT-CAAATTATACTTTC-GTTCGATTAT-TCTTTT-TAATCGAAA-CTCACCC---T-AAC-ATACGCCAA-T-ATTT-TTT-----GT-TA-GTTT-CA-TA--GCTATTG---A-TAACCATCT-TT--AAACT-CATTAGT-AACA-TATTAA----TATATAA-GT-C-TTGTTGACATATG-AG-TATT-ATAT--TGT----------T-TGACGCAATTCTTCCT---TAGAACAAC-TCTATCC-TTC-AAGA-TGGAC-CATTGTTTTT--G--AG--GTACTTTTGAGGAAA-TTTCAACGGTAA-----TTAAATT-TTGA--TAAAGTATCTT-GTCGTTGGCGTTGACA-T-GAAAAGA-TTTTTTTCTAC-ACC--A-TCATGAATGTC-T--GCACA--TGTGACA-CCTTT-TTA-TGCATGG-CCATTCTACGAAATATTCAAAA--TTGAGTA-TTCAAAATGTGTTTGTTTGTACCATATCATTTGG-ATCTCCAAGCTGCTACAATATTTT-ACGG-TTG---GTATG-TGC---TTCAA--CA-TCT--ACTGTGGTTCAGGGGTTTGTTTCAATG-GAAAATGAATCG-ACTTAACAA-----TATGTAAAA-TT-GTCAT----------------A-----TTTCAAACAGTTGCGAGTCCTGCTTTTCCATGAAAAATAAT-AG-ATTTTA-AGG-AAAATCT-----TGTGTAC-TTACTCATCTCAGCATCATATTCCCCTT
gi|11 : aATTTATGCTC-AGATTAA-TGTTTT-C-AG-----GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAAAAT-AAT-AA-TTTGCATATCA-----ATTGCTTC-T-AAT-GAAATACC----AAAGTATT-GATAT--CTT--AACA---TTT--AACTTAATTTTGCC---TTc
gi|6 : aTTCATGCTC-AGATTGT--ATTGT-C-TGTGATAGG--AAACACAGAGGAAATTCAGGCT-GAGTGCT-TACACAATTG---T-TTTTG-TT-ATCT-GGAAAA--T-AAT-AAATTTGCAT-TCAA-TA----GCTC--T-A-T-GAAATA-CCG--AAAGTATT-GATAC--TTTCTAACA---TTT--AACT---TTAC-CT---TTT--CTT---GTGGGAAATAGACATTG-A-TCT-TT-GTAG-TAG-TTTA-GATGGTGAAA--TTTTCGAATGATTCT-CAAATTA-ACTT---G-CCGATTATATTTTTT-T-ATCG-AA--TAA--C---T-AAC-ATA--CCAACT-A-TT-TTTTATATAT-AA-GTTCGAG-TA--GCTATAAGATA-T-ACCATCTGTT--AA--CTCA-TAGT-AA-AATA--AAA---TT---AA-AT-C-TTGTT-ACA-ATGAAG-TA-T-ATAT--T-T----------T-TGAC-CA--TTTTC-----TTGCA-AAC-TTCTATC-CTCAAA-A-T-GCA-CA---TTTTT--A--GAG-GTAC---TGAGGAAA-TA----AGG-AT-----TAAAATT-TTGGATCAAT-----TT-GTC-TTGGAGTT-ACA-T-GAAAA-A-CATTTT----C-A-C--ACCCAT-AATGTC-T--GCAC
gi|20 : atCT---TTT--CTT-TGTGGGGAAATAGACAT-G-A-TCCGTTAGT
gi|8 : cAGTTG-ATGTTCAG-TCGATCATAC--TTT-T-ATTG-AA-GTCA--C---T-GAC-ATA--CCCA-T-A-TTTTTT-----GT-TACATTT--G-TA--CCTATGA---A-T-ACCTTCT-TT--AA--------AATGAA-A-TA--AAATTTTA---AATAT-C-TAATT-ACG-TTC-AA-TA-T--CAT--T-T----------TCCAAC-AA--TTTTTCT---TGAAA-AATATGTGATA---A-AA-A-T--AC-CAT--TTTTCAAA--GA--G-AC---TGAGGAAA-TT----CGG-ACAATTTTT---TT-TTTCGTTAT------TT-CCT-TTGGCATT-ACATT-CAAAA-A-CACTTT----T-A-CCTA-TC---AGTGT--CCAG-ACA--TAGACAG-T--TT-CAA-TG-AT-GACCAT--
gi|7 : atgtgaaaatatgaacaagggcTATCTTTT-T-ACTG-AA-ATCA--TGTGC-AAC------CCAA-TAA-AG-TGG-----GT-TA-TTTC-CT-CA--GCAGTGG---A-T-ACTATCT-TTC-AA--T-CA-CGGT-GA-A-AA--AA----TT---AA-AT-C-TT---------TA-AG-TA-TCATAT--T-CAGAAAAAGTAT-CCAC-CA---TCTCCT---TTGAG-AA---GTAATTGCTCAAA-A-T-GTA-CAT--T-------------ATAC---TGGAGGAA-TT----C
gi|17 : A--TTTTCTTCTCTTGAA-AAA-TATG-TT-ATA-AA-AGT-G-T-CAT--TTTTC--AATGA--G-AC---AGAGGAAA-TT----CGG-tggggggggggaggggggggtgatttactggtgcaatacttatcactcattcgaacaaacatagtgtccacaaatagactgttttgtatgataatcattaatctagtcacattacaacctgtgtgtataggatccacaactgttcatattttctccatcaacattgttcagttcagaggttgtttacaaggcaacgaacttacaaatgta
gi|13 : ctaactaaatatgT----CGG-A------TTAAATT-TTGAGTAAT------TT-GTC-TTG-AGTT-ACA-T-AAAAA-AATATTTT----C-A-C--A-TCAT-AATGT--CA-GCTCA--TATACTA-C--TT-GTA-TG-ATGG-CTAT--TA-AATATATTC-AGA--TT--ATA-CCC--AATTTG
gi|19 : ATTTT----C-A-C--A-TCAT-ATTGTC-T--GCACA--TATGCTA-C--TT-GTA-TG-AT-G-
gi|9 : --A-TCAT-AATGTC-T--GCACA--TATACTA-C--TT-GTA-AG-AT-GGCCAT--TA-AATATATTC-AAA--TT--CTA-CTC--AATTTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--ATTTT-AGCG-TCG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGTG-TTGTTTCCA--TGGAAACGAATTC-AC-TAAC-A-----TATGTAAAATTT-GTCAT----------------T-----TTTCAAACAA--GC--------------CATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTg
gi|7 : CAT-AGTGT--C---CACAAATAGACTG-T--TTTGTA-TG-AT-AATCAT--TA--ATCTAGTC-ACA--TT--A-----C--AACCTGTGTG-T------ATA------GG-ATCCACAA-CTGTTC-AT-ATTTT---C--------------TCCAT---CAA--CA-T-T--GTTC-AGTTCAGAGG-TTGTTTACAA--GGCAACGAACTT-AC-AAAT-G-----TA
gi|10 : tatctttttactgaaatcatgtgcaacccaataaagtgggttatttcctcagcagtggatactatctttcaatcacggtgaaaaaattaaatctttaagtatcatattcagaaaaagtatccaccatctcctttgagaagtaattgctcaaaatgtacattatactggaggaattctggggggggggaggggggggtgatttactggtgcaatacttatcactcattcgaacaaaATTC-AGA--TT--ATA-CCC--AATTTGTTTG-TTGTA-AATGTC-TTTGG-ATCTCCAA-CTGCAA-A--ATTTT-AGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--GCTA-GGTTCAGGGG-TTGTTTCCA--TGGAAATGAATTC-AC-TAAC-A-----TATGTAAAATTT-GTCAT----------------T-----TTTCAAACAA--GCGAGACCT-CTTTTCCATG-AAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTTAGCATCATA-TCCCCTTA
gi|14 : TA-CATATC-TTTAA-ATCTACCA-CTGCTA-A--ATTTC-GACG-TTATCTG---G-T---TTTTCAA--CA-T-TGGAC---AGTTCGGAGA--TATCTCC
gi|12 : aTGGAAACGAATTC-AC-TATC-A-----TATGTAAAATTT-GTCATTTTTCGAACAGGCGATACCTCTTTTCAAACAG--GCGATACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGC-TAC-TT--TCATCTCAGCATCATA-TCCTCttgccatgattaaacgatattga
gi|16 : GAGACCT-CCTCGCCATGATTA--AAC--G-ATTTTTTACG-AAAATCC-----AAT-TAC-TT--TCATCTCAGCATCATA-TTCCCTT
gi|15 : caaaaGAGACCT-CCTTGCCATGATTA--AAC-GA-TTTTT--ATA-AAAATCTAATTATATGTAC-TT--TCATCTCAGCATCATA-TCCCCCTA
gi|18 : tttaagtaaaaGAGACCT-CCTTGCCATGATTA--CAC-GA-TTTTT--ATG-AAAATCT-----AAT-TACATT--T
Alignments
lowQualScore : 11 111 33333 1111 111 1111 111111 22 1 11 111 1 11 2222 1 1 11 2222 1 1 222222222222 1 1 111 11111111 22222 1111 1 1 11 11111 1 11 11 11111 444444444444444444444 11
lowQualScore : 5 77 77 5 5 77 33 5 5 77 000 1 5 5 5 5 55 5 22222 5 5 5 3333 5 77 77 77 000 77 2222 888 5 000000 0 5 666 6 6 6 5 0 33 5 5 5 5 5 5 0 0 5 0 5 33 66 888 5 5 66 5 0 333 0 8888 66 9999 5 5 5 11 4444 5 0 5 0 11 0000 888 0 5 5 55 55 5 5 5 0 66 444444444444 6 0 777 0 2 5 5 88 5 5 777 5 5 66 33333333 5 888 5 9999 66 5 66 22222 5 0000 1 1 0 5 5 5 0 5 0 9999 4 4 55 8 7 3 3 4 0 4 55 4 4 4 66 00 1 11111 66 4 2 5 0 8 4 4 4 4 00 4 4 8888888 4 66 4 4 66 4 88888 4 55 55 4 4 4 4 11111 0 5 1 222222222222222222222 11 0 3 55 3 3 88 3 99999 7 3 55 4
lowQualScore : . .. .. . . .. .. . . .. ... . . . . . .. . ..... . . . .... . .. .. .. ... .. .... ... . ...... . . ... . . . . . .. . . . . . . . . . . . .. .. ... . . .. . . ... . .... .. .... . . . .. .... . . . . .. .... ... . . . .. .. . . . . .. ............ . . ... . . . . .. . . ... . . .. ........ . ... . .... .. . .. ..... . .... . . . . . . . . . .... . . .. . . . . . . . .. . . . .. .. . ..... .. . . . . . . . . . .. . . ....... . .. . . .. . ..... . .. .. . . . . ..... . . . ..................... .. . . .. . . .. . ..... . . .. .
lowQualScore : 7 99 33 7 7 99 66 7 7 99 000 4 7 7 7 7 99 7 11111 7 7 7 9999 7 44 99 99 000 99 1111 888 7 999999 7 7 111 7 7 7 7 1 77 7 7 7 7 7 7 1 2 0 0 0 88 99 888 0 0 99 0 4 888 0 2222 99 0000 0 0 0 99 6666 0 0 0 0 99 6666 888 0 0 0 11 55 0 0 0 0 99 888888888888 2 0 222 1 5 0 0 88 0 0 111 0 0 99 44444444 0 888 0 4444 99 0 99 55555 0 6666 0 0 0 0 0 0 0 0 8 4444 4 4 55 0 3 6 9 0 7 0 55 0 0 0 11 22 0 11111 11 4 7 3 0 9 4 4 4 4 66 4 4 3333333 4 11 4 4 11 4 77777 4 55 00 0 4 4 4 11111 1 0 0 555555555555555555555 99 3 6 00 6 6 66 6 11111 3 6 00 4
consensus : ATTTATGCTC-AGATT--AA-CGTT-TTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCAAT-G-ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AAC----TTTTGCCT---TTT-CTT--TG--GGGGGAAATAGACAT-G-A-TCTGTTAGTAG-TAG-TTTA-GATG-TGAAA-TTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-T-ATCG-AA-CTCA--C---TAA-C-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--T-CA-TAGT-AA-A-TA--AAA---TA---AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ATAT--T-T----------TCGAC-CA--TTTTCCTTNGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTT--AGA--G-TAC---TGAGGAAA-TT----CGG--A-T--TAAA-----TT-TTG----GGTAANTT-GTC-TTGGAGTT-ACA-T-GAAAA-ATATTTT----C-A-C--A-TCAT-AATG-TCTGCACA-TATACTA-C--TT-GTA-TG-ATGGCCAT--TA-GANATATTCA-----GA--TTATA-CCCAATNTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATNTT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
Reference ( family-2394 ) : ATTTATGCTC-AGATT--AA-TGTT-TTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCAAT-G-ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AAC----TTTTGCCT---TTT-CTT--TG--GGGGGAAATAGACAT-G-A-TCTGTTAGTAG-TAG-TTTA-GATG-TGAAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-T-ATCG-AA-CTCA--C---TAA-C-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--T-CA-TAGT-AA-A-TA--AA----TA---AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ATAT--T-T----------TCGAC-CA--TTTTCCTTTGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTT--AGA--G-TAC---TGAGGAAA-TT----CGG--A-T--TAAA-----TT-TTG----GGTNANTT-GTC-TTGGAGTT-ACA-T-GAAAA-ATATTTT----C-A-C--A-TCAT-AATG-TCCGCACA-TATACTA-C--TT-GTA-TG-ATGGCCAT--TA-GANATATTCA-----GA--TTATA-CCCAATNTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATNTT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|1 : ATTTATGCTCGAGATT--AA-TGTTCTTC-GG--GGGAAAA-ACAGAGGAAATTCGGGCTAGAGTGCTATACA--ATTG---TTTTTTGTTT-ATCT-GGAAAA-AATGAATAAATTTGCTAATCAAC-T-GTTCCTTC-TGAATGAAA-TACGCGAAAA-GTATT--ATAT--CTT---ACATTTTTT--AAC----TTTTGCCT---TTTACTTTGTG--GGGGAAAATAGACAT-G-ATTCTGTTAGTAGATAG-TTTA-AATG-TG-AAATTTTTG-AAT-AT-CT-CAAATTATACTTTC-GTTCGATTAT-TCTTTT-TAATCGAAA-CTCACCC---TAA-C-ATACGCCAA-TATTTTTTGT---TA-GTTT-CA-TA--GCTATTG---A-TAACCATCT-TT--AAACT-CATTAGT-AACA-TATTAA----TATATAA-GT-C-TTGTTGACATATGA-G-TATT-ATAT--TGT----------TTGACGCAATTCTTCCTTAGAACAAC-TCTATCC-TTC-AAGA-TGGAC-CATTGTTTTT--GAG--G-TACTTTTGAGGAAA-TTTCAACGGTAA-T--TAAA-----TT-TTGATAAAGTATCTT-GTCGTTGGCGTTGACA-T-GAAAAGATTTTTTTCTAC-ACC--A-TCATGAATG-TCTGCACA-TGTGACA-CCTTT-TTA-TGCATGGCCATTCTACGAAATATTCAAAATTGA--GTATT-CAAAATGTGTTTGTTTGTACCATATCATTTGG-ATCTCCAAGCTGCTACAATA-TTTTACGG-TTG---GTATG-TGC---TTCAA--CA-TCT--ACTGTGGTTCAGGGGTT---TGTTT-CAA--TGGA-AAATGA-ATCG-ACTTAACAA-----TATGTAAAA-TT-GTCATATT---------------------TCAAACAGTTGCGAGTCCTGCTTTTCCATGAAAAATAAT-AG-ATTTTA-AGG-AAAATCT-----TGTGTAC-TTACTCATCTCAGCATCATATTCCCCTT
gi|10 : aATTCA-----GA--TTATA-CCCAATTTGTTTG-TTGTA-AATGTC-TTTGG-ATCTCCAA-CTGCAA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--GCTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAATGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATTTT---------------------TCAAACAA--GCGAGACCT-CTTTTCCATG-AAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTTAGCATCATA-TCCCCTTAc
gi|11 : ATTTATGCTC-AGATT--AA-TGTT-TTC-AG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCA-----ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AACTTAATTTTGCCT---T
gi|12 : a--TGG--AAACGA-ATTC-AC-TATC-A-----TATGTAAAATTT-GTCATTTTTCGAACAGGCGATACCTCTTTTCAAACAG--GCGATACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGC-TAC-TT--TCATCTCAGCATCATA-TCCTC
gi|13 : T----CGG--A-T--TAAA-----TT-TTG----AGTAATTT-GTC-TT-GAGTT-ACA-TAAAAAA-ATATTTT----C-A-C--A-TCAT-AATG-TCAGCTCA-TATACTA-C--TT-GTA-TG-ATGGCTAT--TA-AATATATTCA-----GA--TTATA-CCCAATTTG
gi|14 : TA-CATATC-TTTAA-ATCTACCA-CTGCTA-A--A-TTTCGACG-TTATCTG---G-T---TTTTCAA--CA-T-TGGAC---AGTTCGGAGA-TATCTCCTTGCCA--TGATTAAACGATATT
gi|15 : aGAGACCT-CCTTGCCATGATTA--AAC-GA-TTTTT--ATA-AAAATCTAATTATATGTAC-TT--TCATCTCAGCATCATA-TCCCCCTAga
gi|16 : tttaagtaaaaGAGACCT-CCTCGCCATGATTA--AAC--G-ATTTTTTACG-AAAATCC-----AAT-TAC-TT--TCATCTCAGCATCATA-TTCCCTT
gi|18 : caaaaGAGACCT-CCTTGCCATGATTA--CAC-GA-TTTTT--ATG-AAAATCT-----AAT-TACATT--T
gi|19 : ttcgaaaATTTT----C-A-C--A-TCAT-ATTG-TCTGCACA-TATGCTA-C--TT-GTA-TG-ATGGgta
gi|2 : ATTTATGCTC-AGATT--AAATGTT-TTC-GG--GGG-AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TTTATCTTGGAAAA-AAT-GAT-AATTTGCATAT--ATCA-ATTCCTTC-T-AATGAAA-TAC-C--AAAAGTATT-ATTAT--CTT--A-CA---TTTTTAAC----TTTTGCTT---TTA-CTT--TGTGGGGGAAAATAGACAT-A-T-TCTGTTAGTAG-TAG-TTTAAGATG-TGAAA--TTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-TTATCG-AAACTCA--C---TAA-C-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AAACT-CA-TAGT-AA-AATAT-AA----TA---CATAT-C-TTGTT-ACA-ATGA-G-TA-T-ATATATTGT----------TTGACGCA--TTTTCCTT-GAA-AAC-TCTA-TC-CTC-AAGA-T-GAC-CAT--TTTTT--GAG--G-TAC---TGAGGATA-TT----CGG--A-TATTAAA-----TTATTG----AGTAAATTTGTC-TTGGAGTT-ACA-T-GAAAA-ATTTTTT----CTA-C--AATCATGAATG-TCTGCACA-TCTACTA-C--TT-TTAATG--TGGCCAT--TA-GAAATATTCA-----AA--TTATAATTCAATGTGTT-G-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--ATTTTTAGCGATTG---G---GATG-ATTTTCAA--CA-T-T--ACTA-GTGTCATGGG-T---TGTTT-CCA--TGGGAAAATGA-ATTC-AC-TAAC-A-----TATGTAAAAGTT-GTCATATT---------------------TCAAACAGT-GCGAGTCCT-CTTTTCCATGAAAA--AATAAG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCC
gi|20 : aCCT---TTT-CTT--TG--TGGGGAAATAGACAT-G-A-TCCGTTAGT
gi|3 : ATTTATGCTC-AGATT--AA-TGTT-TTC-GG--GG--AAA-ACAGAAGAAATTCGGGCTAGAGTGCT-TACA--AGTGGTTTTTTTTT-TT-ATCT-GG-AAA-AAT--AT-AATTTGCATATCAAT-G---TGCTTCTT-AATGAAA-TAC-C--AAA-GTATT-GATATTCTTT--AACA---CTT--AAC----TTTTGCCT---TTT-CTT--TT--GTGGG-AATAGACAT-GAA-TCTGTTAGTAG-TAGTTTTA-GATG-TGAAA---TTTGAAATGAT-CTCCAAATTA-ATTTTC-G-TCGATTATATTTTTT-A-ATCG-AA-CTCA--C---TAA-TAATA--CCAA-TATTTTTTGCA--TA-GTTC-AG-TAGCGCTATAG---ATT-ACCATCT-TTGAAA--T-CA-TAGTAAA-A-TA--AA----TA---AA-AT-CTTTGTT-ACA-A-GA-GTTG-T-ATAT--T-T----------T-GAC-CA--ATTTCC-TGGAA-AAC-TCT-ATC-CTC-AA-ATT-GACAAAT--GTTTT--AGAG-G-TAC---TGAGGAAATTT----CGG--A-T--TAAA--------TTG----GGAAATTT-GTC-TTGGAGTT-ACA-TGGAAAA-ATAGTTT----C-A-A--T-TCAT-AATG-TCTGCACATTATACTAGC--TT-GTA-TG-ATGGTCAT--TATGAAATATTCA-----AAATTTATA-CTCAATGTGTTTGTTTGTAGCATATC-TTTGGAATCTCCAA-CTGCTA-A--A--TTTAGCG-TTG---G---G-TGCATTTTCAAGCCATT-T--ACTA-GGTTCAGGGG-----TGTTT-CCA--TGG--AAACGA-ATTCAAC-TAA--A-----TAT-T--AATTTGGTCATATT---------------------TCAAACAG--GCG-GTCCT-TTTTTCCATG-AAA--AAT-AG-ATTTT--AGG--AAATCT-----TGT-TA--TT--TCATCTCAG
gi|4 : aATTTACG-TC-AGAT---AC-CGTT-TTCAGG--GG--AAA-ACAGAGGAAATTCGG-CTAGAGTGCT-TACA--ATTG---TTTTTGT-TT-ATCT-GGAAAA-AAA-AAT-AATTGGCATATCAAT-----TGCTTC-T-AACGAAAATAT-T--AAA-GTATTCGATAT--CGT--AACA---TTT--AAC----CTTTGCCTAAATTT-CTT--TG--TGGGGAAATAGGC-T-G-A-TCTGTTAGTAG-TAG-TT-A-GATG-TGAAA-TTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCTAC-ATATCTTTTAT-ATCG-AA--TCC--C---TAAAC-ATA--CCAA-TATTTTTTGT---TG-G--C-AGATA--GCTATA----A-T-ACCATCT-TT--AA--CGCA-TAGT-AA-A-AA--AAA---TA---AA-ATAC-TTGT--ACA-TTGA-G-TA-T-ATAT--T-T----------TTGAC-CA--TTTTCCTT-GAA-AAC-TCTA-TT-CTC-AA---T-GAC--AC--TTTTT--AGAAGG-TAC---TGAGGAAA-TT----CGG--A-T--TAAAT----TT-TTG----GGTAATTT-GTC-TTGGAGTT-ACA-T-GAAAA-ATA-TTT----C-A-C--A-TCAT-AATGTTCTGCTCA-TA-ACTA-C--TT-GTA-TG-ATGGCCAT--TA-GATATATTCA-----GA--TTATA-CCCAAT-TGTTTG-TTGTA-CGTATC-TTTGG-ATCTCCAA-CTGCT--A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--GCTA-GGTTCA-GGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-A--TAAC-ATAAATTATATAAAATTT-GTCATTTT---------------------TCAAACAA--GCGAGACCT-CTTTTCCATGAAAA--AAT-AGAATTTT--AGGAAAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|5 : aATTTATGTTC-AGATT--AC-CGTT-GTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TGTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCAAT-GCATTGCTTA-T-AATAAAA-TA--T--AAA-GTATT-AATGT--CTT--AACA---TTT--AAC----CTTTCGCT---TTT-TTT--TG--GTGGGAAATAGGCAT-G-A-TCTGTTAGTAG-TAG-TTTA-GATG-TAGA---TTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-T-ATCG-AA-CTCA--C---TAA-C-ATA--CCAA-TA-TTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--C-CA-TAGT-AA-A-TA--AA----TA---AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ACAT--T-T----------TTGAC-CA--TTTTCCTTTGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTT--AGA--G-TAC---TGAGGAAA-TT----CGG--ACT--TAAA-----TT-TTG----GGTTAATT-GTC-TTGGAGTT-ACA-T-GAAAA-ATATTTT----C-A-C--A-TCAT-AATG-T-TGCACA-TATACTA-C--TT-GTA-TG-AT-GCCAT--TA-GAAATATTCA-----AA--TTATA-CTCAATTTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGAGG-T---TGTTT-CCAGGTGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATATT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|6 : TTCATGCTC-AGATTGTAT-TGTC-TGT-GATAGG--AAACACAGAGGAAATTCAGGCT-GAGTGCT-TACACAATTG---TTTTT-G-TT-ATCT-GGAAAATAAT-AA---ATTTGCAT-TCAAT-A----GCT-C-T-A-TGAAA-TAC-CG-AAA-GTATT-GATAC--TTTCTAACA---TTT--AAC----TTT-ACCT---TTT-CTT------GTGGGAAATAGACATTG-A-TCT-TT-GTAG-TAG-TTTA-GATGGTGAAA-TTTTCG-AATGATTCT-CAAATTA-ACTT---G-CCGATTATATTTTTT-T-ATCG-AA--TAA--C---TAA-C-ATA--CCAACTATTTTTTATATATAAGTTCGAG-TA--GCTATAAGATA-T-ACCATCTGTT--AAC-T-CA-TAGT-AA-AATA--AAA---TT---AA-AT-C-TTGTT-ACA-ATGAAG-TA-T-ATAT--T-T----------TTGAC-CA--TTTTC--TTGCA-AAC-TTCTATC-CTC-AA-AAT-GCA-CAT--TTTT---AGA--GGTAC---TGAGGAAA-TA----AGG--A-T--TAAAA----TT-TTG----GATCAATTTGTC-TTGGAGTT-ACA-T-GAAAA-ACATTTT----C-A-C--ACCCAT-AATG-TCTGCAC
gi|7 : atTATCTTTT-T-ACTG-AA-ATCA--TGTGCAA-C------CCAA-TAAAGTGGGT---TA-TTTC-CT-CA--GCAGTGG---A-T-ACTATCT-TTC-AA--T-CA-CGGT-GA-A-AA--AA----TT---AA-AT-C-TT---------TAA-G-TA-TCATAT--T-CAGAAAAAGTATCCAC-CA---TCTCCTTTGAG-AA---GTAATTGCTCAAA-A-T-GTA-CAT--T-----------A-TAC---TGGAGGAA-TT----C
gi|7 : CAT-AGTG-TCCACAAA-TAGACTG-T--TTTGTA-TG-ATAATCAT--TA--ATCTAGTCA-----CA--TTA-----CAACCTGTGTG-T------ATA------GG-ATCCACAA-CTGTTC-AT-A-TTTT--C--------------TCCA---TCAA--CA-T-T--GTTC-AGTTCAGAGG-T---TGTTT-ACA--AGG--CAACGA-ACTT-AC-AAAT-G-----TAtggggggggggaggggggggtgatttactggtgcaatacttatcactcattcgaacaaacatagtgtccacaaatagactgttttgtatgataatcattaatctagtcacattacaacctgtgtgtataggatccacaactgttcatattttctccatcaacattgttcagttcagaggttgtttacaaggcaacgaacttacaaatgta
gi|8 : tatctttttactgaaatcatgtgcaacccaataaagtgggttatttcctcagcagtggatactatctttcaatcacggtgaaaaaattaaatctttaagtatcatattcagaaaaagtatccaccatctcctttgagaagtaattgctcaaaatgtacattatactggaggaattctggggggggggaggggggggtgatttactggtgcaatacttatcactcattcgaacaaaATG-TGAAAATAT--G-AACAAG-GG-CAG-TTG-ATGTTCAG-TCGATCATAC--TTT-T-ATTG-AA-GTCA--C---TGA-C-ATA--CCCA-TATTTTTTGT---TACATTT--G-TA--CCTATGA---A-T-ACCTTCT-TT--AA--------AATGAA-A-TA--AAATTTTA---AATAT-C-TAATT-ACG-TTCA-A-TA-TCAT-T--T-T----------CCAAC-AA--TTTTTCTTGAAA-AATATGTGATA---A-AA-A-T--AC-CAT--TTTTCAAAGA--G--AC---TGAGGAAA-TT----CGG--A-C----AATTTTTTT-TTT----CGTTATTT-CCT-TTGGCATT-ACATT-CAAAA-ACACTTT----T-A-CCTA-TC---AGTG-TCCAGACA-TAGACAG-T--TT-CAA-TG-ATGACCAT--
gi|9 : --A-TCAT-AATG-TCTGCACA-TATACTA-C--TT-GTA-AG-ATGGCCAT--TA-AATATATTCA-----AA--TTCTA-CTCAATTTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TCG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGTG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATTTT---------------------TCAAACAA--GC--------------CATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTAACTAAATATGATTTTCTTCTCTTGAAAAATATGTTATAAAAGTGTCATTTTTCAATGAGACAGAGGAAATTCGG
Alignments
lowQualScore : 11 111 33333 1111 111 1111 111111 1 11 111 1 11 2222 22222 11111 1 1 222222222222 1 1 111 111111 22222 1111 1 11 11111 1 11 11 11111 444444444444444444444 11
lowQualScore : 5 77 888 5 5 77 33 5 5 77 000 1 5 5 5 5 55 5 22222 5 5 5 3333 5 77 77 77 000 77 2222 888 5 000000 0 5 666 6 6 6 6 3 1 6 6 6 5 5 5 0 5 0 5 33 66 888 5 5 66 5 0 333 0 8888 66 9999 5 5 5 11 4444 5 5 5 00000 5 11111 0 5 5 0 5 55 5 5 5 0 66 444444444444 6 0 777 0 0 5 5 88 5 5 111 5 77 66 2 333333 5 888 5 9999 66 5 66 22222 5 0000 5 1 5 5 5 5 0 5 0 9999 4 4 55 8 7 3 4 0 4 55 4 4 4 66 00 1 11111 66 4 2 5 0 8 4 4 4 4 00 4 4 8888888 4 66 4 4 66 4 88888 4 55 55 4 4 4 4 11111 0 5 1 222222222222222222222 11 0 3 55 3 3 88 3 99999 7 3 55 4
lowQualScore : . .. ... . . .. .. . . .. ... . . . . . .. . ..... . . . .... . .. .. .. ... .. .... ... . ...... . . ... . . . . . . . . . . . . . . . . .. .. ... . . .. . . ... . .... .. .... . . . .. .... . . . ..... . ..... . . . . . .. . . . . .. ............ . . ... . . . . .. . . ... . .. .. . ...... . ... . .... .. . .. ..... . .... . . . . . . . . . .... . . .. . . . . . . .. . . . .. .. . ..... .. . . . . . . . . . .. . . ....... . .. . . .. . ..... . .. .. . . . . ..... . . . ..................... .. . . .. . . .. . ..... . . .. .
lowQualScore : 7 99 777 7 7 99 66 7 7 99 000 4 7 7 7 7 99 7 11111 7 7 7 9999 7 44 99 99 000 99 1111 888 7 999999 7 7 111 7 7 7 7 2 7 7 7 7 7 7 7 2 0 0 0 88 99 888 0 0 99 0 4 888 0 2222 99 0000 0 0 0 99 6666 0 0 0 99999 0 22222 0 0 0 1 0 55 0 0 0 0 99 888888888888 2 0 222 1 8 0 0 88 0 0 000 0 55 99 0 666666 0 888 0 4444 99 0 99 55555 0 6666 0 0 0 0 0 0 0 0 8 4444 4 4 55 0 3 6 0 7 0 55 0 0 0 11 22 0 11111 11 4 7 3 0 9 4 4 4 4 66 4 4 3333333 4 11 4 4 11 4 77777 4 55 00 0 4 4 4 11111 1 0 0 555555555555555555555 99 3 6 00 6 6 66 6 11111 3 6 00 4
consensus : ATTTATGCTC-AGATT--AA-CGTT-TTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCAAT-G-ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AAC----TTTTGCCT---TTT-CTT--TG--GGGGGAAATAGACAT-G-A-TCTGTTAGTAG-TAG-TTTA-GATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-T-ATCG-AA-CTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--T-CA-TAGT-AA-A-TA--AA-AT---A-AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ATAT--T-T----------TCGAC-CA--TTTTCCTTNGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TT----CGG--A-T--TAAA-----TT-TTG----GGT-AATTT-GTC-TTGGAGTT-ACA-T-GAAAA-ATATTTT----C-A-C--A-TCAT-AATG-TCTGCACA-TATACTA-C--TT-GT-ATG-ATGGCCAT--TA-GANATATTCA-----GA--TTAT-ACCCAATNTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATNTT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
Reference ( family-2394 ) : ATTTATGCTC-AGATT--AA-CGTT-TTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCAAT-G-ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AAC----TTTTGCCT---TTT-CTT--TG--GGGGGAAATAGACAT-G-A-TCTGTTAGTAG-TAG-TTTA-GATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-T-ATCG-AA-CTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--T-CA-TAGT-AA-A-TA--AA-AT---A-AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ATAT--T-T----------TCGAC-CA--TTTTCCTTNGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TT----CGG--A-T--TAAA-----TT-TTG----GGT-AANTT-GTC-TTGGAGTT-ACA-T-GAAAA-ATATTTT----C-A-C--A-TCAT-AATG-TCTGCACA-TATACTA-C--TT-GT-ATG-ATGGCCAT--TA-GANATATTCA-----GA--TTAT-ACCCAATNTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATNTT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|1 : ATTTATGCTCGAGATT--AA-TGTTCTTC-GG--GGGAAAA-ACAGAGGAAATTCGGGCTAGAGTGCTATACA--ATTG---TTTTTTGTTT-ATCT-GGAAAA-AATGAATAAATTTGCTAATCAAC-T-GTTCCTTC-TGAATGAAA-TACGCGAAAA-GTATT--ATAT--CTT---ACATTTTTT--AAC----TTTTGCCT---TTTACTTTGTG--GGGGAAAATAGACAT-G-ATTCTGTTAGTAGATAG-TTTA-AATG-TGAAATTTTTG-AAT-AT-CT-CAAATTATACTTTC-GTTCGATTAT-TCTTTT-TAATCGAAA-CTCACCC---T-AAC-ATACGCCAA-TATTTTTTGT---TA-GTTT-CA-TA--GCTATTG---A-TAACCATCT-TT--AAACT-CATTAGT-AACA-TATTAATAT---ATAA-GT-C-TTGTTGACATATGA-G-TATT-ATAT--TGT----------TTGACGCAATTCTTCCTTAGAACAAC-TCTATCC-TTC-AAGA-TGGAC-CATTGTTTTTG--AG--G-TACTTTTGAGGAAA-TTTCAACGGTAA-T--TAAA-----TT-TTGATAAAGT-ATCTT-GTCGTTGGCGTTGACA-T-GAAAAGATTTTTTTCTAC-ACC--A-TCATGAATG-TCTGCACA-TGTGACA-CCTTT-TT-ATGCATGGCCATTCTACGAAATATTCAAAATTGA--GTAT-TCAAAATGTGTTTGTTTGTACCATATCATTTGG-ATCTCCAAGCTGCTACAATA-TTTTACGG-TTG---GTATG-TGC---TTCAA--CA-TCT--ACTGTGGTTCAGGGGTT---TGTTT-CAA--TGGA-AAATGA-ATCG-ACTTAACAA-----TATGTAAAA-TT-GTCATATT---------------------TCAAACAGTTGCGAGTCCTGCTTTTCCATGAAAAATAAT-AG-ATTTTA-AGG-AAAATCT-----TGTGTAC-TTACTCATCTCAGCATCATATTCCCCTT
gi|10 : aATTCA-----GA--TTAT-ACCCAATTTGTTTG-TTGTA-AATGTC-TTTGG-ATCTCCAA-CTGCAA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--GCTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAATGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATTTT---------------------TCAAACAA--GCGAGACCT-CTTTTCCATG-AAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTTAGCATCATA-TCCCCTTAc
gi|11 : ATTTATGCTC-AGATT--AA-TGTT-TTC-AG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCA-----ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AACTTAATTTTGCCT---T
gi|12 : a--TGG--AAACGA-ATTC-AC-TATC-A-----TATGTAAAATTT-GTCATTTTTCGAACAGGCGATACCTCTTTTCAAACAG--GCGATACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGC-TAC-TT--TCATCTCAGCATCATA-TCCTC
gi|13 : T----CGG--A-T--TAAA-----TT-TTG----AGT-AATTT-GTC-TT-GAGTT-ACA-TAAAAAA-ATATTTT----C-A-C--A-TCAT-AATG-TCAGCTCA-TATACTA-C--TT-GT-ATG-ATGGCTAT--TA-AATATATTCA-----GA--TTAT-ACCCAATTTG
gi|14 : TA-CATATC-TTTAA-ATCTACCA-CTGCTA-A--A-TTTCGACG-TTATCTG---G-T---TTTTCAA--CA-T-TGGAC---AGTTCGGAGA-TATCTCCTTGCCA--TGATTAAACGATATT
gi|15 : aGAGACCT-CCTTGCCATGATTA--AAC-GA-TTTTT--ATA-AAAATCTAATTATATGTAC-TT--TCATCTCAGCATCATA-TCCCCCTAga
gi|16 : tttaagtaaaaGAGACCT-CCTCGCCATGATTA--AAC--G-ATTTTTTACG-AAAATCC-----AAT-TAC-TT--TCATCTCAGCATCATA-TTCCCTT
gi|18 : caaaaGAGACCT-CCTTGCCATGATTA--CAC-GA-TTTTT--ATG-AAAATCT-----AAT-TACATT--T
gi|19 : ttcgaaaATTTT----C-A-C--A-TCAT-ATTG-TCTGCACA-TATGCTA-C--TT-GT-ATG-ATGGgta
gi|2 : ATTTATGCTC-AGATT--AAATGTT-TTC-GG--GGG-AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TTTATCTTGGAAAA-AAT-GAT-AATTTGCATAT--ATCA-ATTCCTTC-T-AATGAAA-TAC-C--AAAAGTATT-ATTAT--CTT--A-CA---TTTTTAAC----TTTTGCTT---TTA-CTT--TGTGGGGGAAAATAGACAT-A-T-TCTGTTAGTAG-TAG-TTTAAGATG-TGAAATTTT-G-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-TTATCG-AAACTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AAACT-CA-TAGT-AA-AATA--TA-AT---A-CATAT-C-TTGTT-ACA-ATGA-G-TA-T-ATATATTGT----------TTGACGCA--TTTTCCTT-GAA-AAC-TCTA-TC-CTC-AAGA-T-GAC-CAT--TTTTTG--AG--G-TAC---TGAGGATA-TT----CGG--A-TATTAAA-----TTATTG----AGT-AAATTTGTC-TTGGAGTT-ACA-T-GAAAA-ATTTTTT----CTA-C--AATCATGAATG-TCTGCACA-TCTACTA-C--TT-TTAATG--TGGCCAT--TA-GAAATATTCA-----AA--TTATAATTCAATGTG-TTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--ATTTTTAGCGATTG---G---GATG-ATTTTCAA--CA-T-T--ACTA-GTGTCATGGG-T---TGTTT-CCA--TGGGAAAATGA-ATTC-AC-TAAC-A-----TATGTAAAAGTT-GTCATATT---------------------TCAAACAGT-GCGAGTCCT-CTTTTCCATGAAAA--AATAAG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCC
gi|20 : aCCT---TTT-CTT--TG--TGGGGAAATAGACAT-G-A-TCCGTTAGT
gi|3 : ATTTATGCTC-AGATT--AA-TGTT-TTC-GG--GG--AAA-ACAGAAGAAATTCGGGCTAGAGTGCT-TACA--AGTGGTTTTTTTTT-TT-ATCT-GG-AAA-AAT--AT-AATTTGCATATCAAT-G---TGCTTCTT-AATGAAA-TAC-C--AAA-GTATT-GATATTCTTT--AACA---CTT--AAC----TTTTGCCT---TTT-CTT--TT--GTGGG-AATAGACAT-GAA-TCTGTTAGTAG-TAGTTTTA-GATG-TGAAA--TTTGAAATGAT-CTCCAAATTA-ATTTTC-G-TCGATTATATTTTTT-A-ATCG-AA-CTCA--C---T-AATAATA--CCAA-TATTTTTTGCA--TA-GTTC-AG-TAGCGCTATAG---ATT-ACCATCT-TTGAAA--T-CA-TAGT-AA-A-AT--AA-AT---A-AA-AT-CTTTGTT-ACA-A-GA-GTTG-T-ATAT--T-T----------T-GAC-CA--ATTTCC-TGGAA-AAC-TCT-ATC-CTC-AA-ATT-GACAAAT--GTTTTA--GAG-G-TAC---TGAGGAAATTT----CGG--A-T--TAAA--------TTG----GGA-AATTT-GTC-TTGGAGTT-ACA-TGGAAAA-ATAGTTT----C-A-A--T-TCAT-AATG-TCTGCACATTATACTAGC--TT-GT-ATG-ATGGTCAT--TATGAAATATTCA-----AAATTTAT-ACTCAATGTGTTTGTTTGTAGCATATC-TTTGGAATCTCCAA-CTGCTA-A--A--TTTAGCG-TTG---G---G-TGCATTTTCAAGCCATT-T--ACTA-GGTTCAGGGG-----TGTTT-CCA--TGG--AAACGA-ATTCAAC-TAA--A-----TAT-T--AATTTGGTCATATT---------------------TCAAACAG--GCG-GTCCT-TTTTTCCATG-AAA--AAT-AG-ATTTT--AGG--AAATCT-----TGT-TA--TT--TCATCTCAG
gi|4 : aATTTACG-TC-AGAT---AC-CGTT-TTCAGG--GG--AAA-ACAGAGGAAATTCGG-CTAGAGTGCT-TACA--ATTG---TTTTTGT-TT-ATCT-GGAAAA-AAA-AAT-AATTGGCATATCAAT-----TGCTTC-T-AACGAAAATAT-T--AAA-GTATTCGATAT--CGT--AACA---TTT--AAC----CTTTGCCTAAATTT-CTT--TG--TGGGGAAATAGGC-T-G-A-TCTGTTAGTAG-TAG-TT-A-GATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCTA-CATATCTTTTAT-ATCG-AA--TCC--C---TAAAC-ATA--CCAA-TATTTTTTGT---TG-G--C-AGATA--GCTATA----A-T-ACCATCT-TT--AA--CGCA-TAGT-AA-A-AA--AA-AT---A-AA-ATAC-TTG-T-ACA-TTGA-G-TA-T-ATAT--T-T----------TTGAC-CA--TTTTCCTT-GAA-AAC-TCT-ATT-CTC--A-A-T-GA--CAC--TTTTTA--GAAGG-TAC---TGAGGAAA-TT----CGG--A-T--TAAAT----TT-TTG----GGT-AATTT-GTC-TTGGAGTT-ACA-T-GAAAA-ATA-TTT----C-A-C--A-TCAT-AATGTTCTGCTCA-TA-ACTA-C--TT-GT-ATG-ATGGCCAT--TA-GATATATTCA-----GA--TTAT-ACCCAAT-TGTTTG-TTGTA-CGTATC-TTTGG-ATCTCCAA-CTGCT--A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--GCTA-GGTTCA-GGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-A--TAAC-ATAAATTATATAAAATTT-GTCATTTT---------------------TCAAACAA--GCGAGACCT-CTTTTCCATGAAAA--AAT-AGAATTTT--AGGAAAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|5 : aATTTATGTTC-AGATT--AC-CGTT-GTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TGTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCAAT-GCATTGCTTA-T-AATAAAA-TA--T--AAA-GTATT-AATGT--CTT--AACA---TTT--AAC----CTTTCGCT---TTT-TTT--TG--GTGGGAAATAGGCAT-G-A-TCTGTTAGTAG-TAG-TTTA-GATG-TAGA--TTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-T-ATCG-AA-CTCA--C---T-AAC-ATA--CCAA-TA-TTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--C-CA-TAGT-AA-A-T---AA-AT---A-AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ACAT--T-T----------TTGAC-CA--TTTTCCTTTGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TT----CGG--ACT--TAAA-----TT-TTG----GGT-TAATT-GTC-TTGGAGTT-ACA-T-GAAAA-ATATTTT----C-A-C--A-TCAT-AATG-T-TGCACA-TATACTA-C--TT-GT-ATG-AT-GCCAT--TA-GAAATATTCA-----AA--TTAT-ACTCAATTTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGAGG-T---TGTTT-CCAGGTGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATATT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|6 : TTCATGCTC-AGATTGTAT-TGTC-TGT-GATAGG--AAACACAGAGGAAATTCAGGCT-GAGTGCT-TACACAATTG---TTTTT-G-TT-ATCT-GGAAAATAAT-AA---ATTTGCAT-TCAAT-A----GCT-C-T-A-TGAAA-TAC-CG-AAA-GTATT-GATAC--TTTCTAACA---TTT--AAC----TTT-ACCT---TTT-CTT------GTGGGAAATAGACATTG-A-TCT-TT-GTAG-TAG-TTTA-GATGGTGAAATTTTCG-AATGATTCT-CAAATTA-ACTT---G-CCGATTATATTTTTT-T-ATCG-AA--TAA--C---T-AAC-ATA--CCAACTATTTTTTATATATAAGTTCGAG-TA--GCTATAAGATA-T-ACCATCTGTT--AAC-T-CA-TAGT-AA-AATA--AA-AT---T-AA-AT-C-TTGTT-ACA-ATGAAG-TA-T-ATAT--T-T----------TTGAC-CA--TTTTC--TTGCA-AAC-TTCTATC-CTC-AA-AAT-GCA-CAT--TTTT-A--GA--GGTAC---TGAGGAAA-TA----AGG--A-T--TAAAA----TT-TTG----GATCAATTT-GTC-TTGGAGTT-ACA-T-GAAAA-ACATTTT----C-A-C--ACCCAT-AATG-TCTGCAC
gi|7 : atTATCTTTT-T-ACTG-AA-ATCA--TGTGC-AAC------CCAA-TAAAGTGGGT---TA-TTTC-CT-CA--GCAGTGG---A-T-ACTATCT-TTC-AA--T-CA-CGGT-GA-A--A--AA-AT---T-AA-AT-C-TT---------TAA-G-TA-TCATAT--T-CAGAAAAAGTATCCAC-CA---TCTCCTTTGAG-AA---GTAATTGCTCAAA-A-T-GTA-CAT--T-----------A-TAC---TGGAGGAA-TT----C
gi|7 : CAT-AGTG-TCCACAAA-TAGACTG-T--TTTGT-ATG-ATAATCAT--TA--ATCTAGTCA-----CA--TTA-----CAACCTGTGTG-T------ATA------GG-ATCCACAA-CTGTTC-AT-A-TTTT--C--------------TCCAT---CAA--CA-T-T--GTTC-AGTTCAGAGG-T---TGTTT-ACA--AGG--CAACGA-ACTT-AC-AAAT-G-----TAtggggggggggaggggggggtgatttactggtgcaatacttatcactcattcgaacaaacatagtgtccacaaatagactgttttgtatgataatcattaatctagtcacattacaacctgtgtgtataggatccacaactgttcatattttctccatcaacattgttcagttcagaggttgtttacaaggcaacgaacttacaaatgta
gi|8 : tatctttttactgaaatcatgtgcaacccaataaagtgggttatttcctcagcagtggatactatctttcaatcacggtgaaaaaattaaatctttaagtatcatattcagaaaaagtatccaccatctcctttgagaagtaattgctcaaaatgtacattatactggaggaattctggggggggggaggggggggtgatttactggtgcaatacttatcactcattcgaacaaaAGTTG-ATGTTCAG-TCGATCATAC--TTT-T-ATTG-AA-GTCA--C---T-GAC-ATA--CCCA-TATTTTTTGT---TACATTT--G-TA--CCTATGA---A-T-ACCTTCT-TT--AA--------AATGAA-A-TA--AA-ATTTTA-AATAT-C-TAATT-ACG-TTCA-A-TA-TCAT-T--T-T----------CCAAC-AA--TTTTTCTTGAAA-AATATGTGATA-A---AA-A-T--AC-CAT--TTTTCAAAGA--G--AC---TGAGGAAA-TT----CGG--A-C----AATTTTTTT-TTT----CGT-TATTT-CCT-TTGGCATT-ACATT-CAAAA-ACACTTT----T-A-CCTA-TC---AGTG-TCCAGACA-TAGACAG-T--TT-CA-ATG-ATGACCAT--
gi|9 : atgtgaaaatatgaacaagggc--A-TCAT-AATG-TCTGCACA-TATACTA-C--TT-GT-AAG-ATGGCCAT--TA-AATATATTCA-----AA--TTCT-ACTCAATTTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TCG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGTG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATTTT---------------------TCAAACAA--GC--------------CATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTAACTAAATATGATTTTCTTCTCTTGAAAAATATGTTATAAAAGTGTCATTTTTCAATGAGACAGAGGAAATTCGG
Alignments
lowQualScore : 11 111 33333 1111 111 1111 111111 1 1 111 1 11 2222 1 11111 11111 1 1 2222222222222 1 1 1 111 111111 1111111111 11 22222 1111 222222222222 11 11111 1 11 11 11111 444444444444444444444 11
lowQualScore : 5 77 888 5 5 77 33 5 5 77 000 1 5 5 5 5 55 5 22222 5 5 5 3333 5 77 77 77 000 77 2222 888 5 000000 0 5 666 6 6 6 6 1 6 6 6 5 5 5 55 5 5 0 8 66 888 5 5 66 5 0 333 0 8888 66 9999 5 5 5 11 4444 5 0 5 55555 5 11111 0 5 5 0 5 55 5 5 5 0 5 6666666666666 6 0 777 0 0 5 5 4 5 5 111 5 77 66 2 333333 5 888 5 3333333333 22 4 00000 4 9999 8 4 1 4 4 8 4 1 4 8888 4 4 0000 555555555555 3 4 0 8 55 4 4 66 00 1 11111 66 4 2 5 0 8 4 4 4 4 00 4 4 8888888 4 66 4 4 66 4 88888 4 55 55 4 4 4 4 11111 0 5 1 222222222222222222222 11 0 3 55 3 3 88 3 99999 7 3 55 4
lowQualScore : . .. ... . . .. .. . . .. ... . . . . . .. . ..... . . . .... . .. .. .. ... .. .... ... . ...... . . ... . . . . . . . . . . . .. . . . . .. ... . . .. . . ... . .... .. .... . . . .. .... . . . ..... . ..... . . . . . .. . . . . . ............. . . ... . . . . . . . ... . .. .. . ...... . ... . .......... .. . ..... . .... . . . . . . . . . .... . . .... ............ . . . . .. . . .. .. . ..... .. . . . . . . . . . .. . . ....... . .. . . .. . ..... . .. .. . . . . ..... . . . ..................... .. . . .. . . .. . ..... . . .. .
lowQualScore : 7 99 777 7 7 99 66 7 7 99 000 4 7 7 7 7 99 7 11111 7 7 7 9999 7 44 99 99 000 99 1111 888 7 999999 7 7 111 7 7 7 7 3 7 7 7 7 7 7 22 0 0 0 8 99 888 0 0 99 0 4 888 0 2222 99 0000 0 0 0 99 6666 0 0 0 99999 0 22222 0 0 0 1 0 55 0 0 0 0 0 6666666666666 2 0 222 1 8 0 0 5 0 0 000 0 55 99 0 666666 0 888 0 3333333333 22 4 00000 4 4444 9 4 8 4 4 9 4 3 0 5555 0 0 1111 999999999999 6 0 7 0 55 0 0 11 22 0 11111 11 4 7 3 0 9 4 4 4 4 66 4 4 3333333 4 11 4 4 11 4 77777 4 55 00 0 4 4 4 11111 1 0 0 555555555555555555555 99 3 6 00 6 6 66 6 11111 3 6 00 4
consensus : ATTTATGCTC-AGATT--AA-CGTT-TTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCAAT-G-ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AAC----TTTTGCCT---TTT-CTT--TG--GGGGGAAATAGACAT-G-A-TCTGTTAGTAG-TAG-TTT-AGATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATC-TTTT-T-ATCG-AACTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--T-CA-TAGT-AA-A-TA--AA-AT---A-AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ATAT-T--T----------TCGAC-CA--TTTTCCTTNGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TT----C-----GG--A-TTAAA-----TT-TTG----GGT-AATTTGTC-TTGGAGTT-ACA-T-GAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-TCTGCACA-TATACTA-C--TTGT-ATG-ATGGCCAT--TA-GANATATTCA-----GA--TTAT-ACCCAATNTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATNTT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
Reference ( family-2394 ) : ATTTATGCTC-AGATT--AA-CGTT-TTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCAAT-G-ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AAC----TTTTGCCT---TTT-CTT--TG--GGGGGAAATAGACAT-G-A-TCTGTTAGTAG-TAG-TTT-AGATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATC-TTTT-T-ATCG-AACTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--T-CA-TAGT-AA-A-TA--AA-AT---A-AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ATAT-T--T----------TCGAC-CA--TTTTCCTTNGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TT----C-----GG--A-TTAAA-----TT-TTG----GGT-AATTTGTC-TTGGAGTT-ACA-T-GAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-TCTGCACA-TATACTA-C--TTGT-ATG-ATGGCCAT--TA-GANATATTCA-----GA--TTAT-ACCCAATNTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATNTT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|1 : ATTTATGCTCGAGATT--AA-TGTTCTTC-GG--GGGAAAA-ACAGAGGAAATTCGGGCTAGAGTGCTATACA--ATTG---TTTTTTGTTT-ATCT-GGAAAA-AATGAATAAATTTGCTAATCAAC-T-GTTCCTTC-TGAATGAAA-TACGCGAAAA-GTATT--ATAT--CTT---ACATTTTTT--AAC----TTTTGCCT---TTTACTTTGTG--GGGGAAAATAGACAT-G-ATTCTGTTAGTAGATAG-TTT-AAATG-TGAAATTTTTG-AAT-AT-CT-CAAATTATACTTTC-GTTCGATTAT-TC-TTTT-TAATCGAAACTCACCC---T-AAC-ATACGCCAA-TATTTTTTGT---TA-GTTT-CA-TA--GCTATTG---A-TAACCATCT-TT--AAACT-CATTAGT-AACA-TATTAATAT---ATAA-GT-C-TTGTTGACATATGA-G-TATT-ATAT-TG-T----------TTGACGCAATTCTTCCTTAGAACAAC-TCTATCC-TTC-AAGA-TGGAC-CATTGTTTTTG--AG--G-TACTTTTGAGGAAA-TTTCAAC-----GGTAA-TTAAA-----TT-TTGATAAAGT-ATCTTGTCGTTGGCGTTGACA-T-GAAAAGATTTTT-TTCTAC-ACC--A-TCATG-----------AATG-TCTGCACA-TGTGACA-CCTTTTT-ATGCATGGCCATTCTACGAAATATTCAAAATTGA--GTAT-TCAAAATGTGTTTGTTTGTACCATATCATTTGG-ATCTCCAAGCTGCTACAATA-TTTTACGG-TTG---GTATG-TGC---TTCAA--CA-TCT--ACTGTGGTTCAGGGGTT---TGTTT-CAA--TGGA-AAATGA-ATCG-ACTTAACAA-----TATGTAAAA-TT-GTCATATT---------------------TCAAACAGTTGCGAGTCCTGCTTTTCCATGAAAAATAAT-AG-ATTTTA-AGG-AAAATCT-----TGTGTAC-TTACTCATCTCAGCATCATATTCCCCTT
gi|10 : aATTCA-----GA--TTAT-ACCCAATTTGTTTG-TTGTA-AATGTC-TTTGG-ATCTCCAA-CTGCAA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--GCTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAATGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATTTT---------------------TCAAACAA--GCGAGACCT-CTTTTCCATG-AAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTTAGCATCATA-TCCCCTTAc
gi|11 : ATTTATGCTC-AGATT--AA-TGTT-TTC-AG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCA-----ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AACTTAATTTTGCCT---T
gi|12 : a--TGG--AAACGA-ATTC-AC-TATC-A-----TATGTAAAATTT-GTCATTTTTCGAACAGGCGATACCTCTTTTCAAACAG--GCGATACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGC-TAC-TT--TCATCTCAGCATCATA-TCCTC
gi|13 : T----C-----GG--A-TTAAA-----TT-TTG----AGT-AATTTGTC-TT-GAGTT-ACA-TAAAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-TCAGCTCA-TATACTA-C--TTGT-ATG-ATGGCTAT--TA-AATATATTCA-----GA--TTAT-ACCCAATTTG
gi|14 : TA-CATATC-TTTAA-ATCTACCA-CTGCTA-A--A-TTTCGACG-TTATCTG---G-T---TTTTCAA--CA-T-TGGAC---AGTTCGGAGA-TATCTCCTTGCCA--TGATTAAACGATATT
gi|15 : aGAGACCT-CCTTGCCATGATTA--AAC-GA-TTTTT--ATA-AAAATCTAATTATATGTAC-TT--TCATCTCAGCATCATA-TCCCCCTAga
gi|16 : tttaagtaaaaGAGACCT-CCTCGCCATGATTA--AAC--G-ATTTTTTACG-AAAATCC-----AAT-TAC-TT--TCATCTCAGCATCATA-TTCCCTT
gi|18 : caaaaGAGACCT-CCTTGCCATGATTA--CAC-GA-TTTTT--ATG-AAAATCT-----AAT-TACATT--T
gi|19 : ttcgaaaATTT-T----C-A-C--A-TCAT------------ATTG-TCTGCACA-TATGCTA-C--TTGT-ATG-ATGGgta
gi|2 : ATTTATGCTC-AGATT--AAATGTT-TTC-GG--GGG-AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TTTATCTTGGAAAA-AAT-GAT-AATTTGCATAT--ATCA-ATTCCTTC-T-AATGAAA-TAC-C--AAAAGTATT-ATTAT--CTT--A-CA---TTTTTAAC----TTTTGCTT---TTA-CTT--TGTGGGGGAAAATAGACAT-A-T-TCTGTTAGTAG-TAG-TTTAAGATG-TGAAA-TTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTTT-T-ATCGAAACTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AAACT-CA-TAGTAAA-A-TA--TA-AT---A-CATAT-C-TTGTT-ACA-ATGA-G-TA-T-ATATATTGT----------TTGACGCA--TTTTCCTT-GAA-AAC-TCT-ATC-CTC-AAGA-T-GAC-CAT--TTTTTG--AG--G-TAC---TGAGGATA-TT----C-----GGATA-TTAAA-----TTATTG----AGTAAATTTGTC-TTGGAGTT-ACA-T-GAAAA-ATTTTT-T----CTA-CA-A-TCATG-----------AATG-TCTGCACA-TCTACTA-C--TTTTAATG--TGGCCAT--TA-GAAATATTCA-----AA--TTATAATTCAATGTG-TTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--ATTTTTAGCGATTG---G---GATG-ATTTTCAA--CA-T-T--ACTA-GTGTCATGGG-T---TGTTT-CCA--TGGGAAAATGA-ATTC-AC-TAAC-A-----TATGTAAAAGTT-GTCATATT---------------------TCAAACAGT-GCGAGTCCT-CTTTTCCATGAAAA--AATAAG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCC
gi|20 : aCCT---TTT-CTT--TG--TGGGGAAATAGACAT-G-A-TCCGTTAGT
gi|3 : ATTTATGCTC-AGATT--AA-TGTT-TTC-GG--GG--AAA-ACAGAAGAAATTCGGGCTAGAGTGCT-TACA--AGTGGTTTTTTTTT-TT-ATCT-GG-AAA-AAT--AT-AATTTGCATATCAAT-G---TGCTTCTT-AATGAAA-TAC-C--AAA-GTATT-GATATTCTTT--AACA---CTT--AAC----TTTTGCCT---TTT-CTT--TT--GTGGG-AATAGACAT-GAA-TCTGTTAGTAG-TAGTTTT-AGATG-TGAAA--TTTGAAATGAT-CTCCAAATTA-ATTTTC-G-TCGATTATATT-TTTT-A-ATCG-AACTCA--C---T-AATAATA--CCAA-TATTTTTTGCA--TA-GTTC-AG-TAGCGCTATAG---ATT-ACCATCT-TTGAAA--T-CA-TAGT-AA-A-AT--AA-AT---A-AA-AT-CTTTGTT-ACA-A-GA-GTTG-T-ATAT-T--T----------T-GAC-CA--ATTTCC-TGGAA-AAC-TCT-ATC-CTC-AA-ATT-GACAAAT--GTTTTA--GAG-G-TAC---TGAGGAAATTT----C-----GG--A-TTAAA--------TTG----GGA-AATTTGTC-TTGGAGTT-ACA-TGGAAAA-ATAGTT-T----C-A-A--T-TCAT------------AATG-TCTGCACATTATACTAGC--TTGT-ATG-ATGGTCAT--TATGAAATATTCA-----AAATTTAT-ACTCAATGTGTTTGTTTGTAGCATATC-TTTGGAATCTCCAA-CTGCTA-A--A--TTTAGCG-TTG---G---G-TGCATTTTCAAGCCATT-T--ACTA-GGTTCAGGGG-----TGTTT-CCA--TGG--AAACGA-ATTCAAC-TAA--A-----TAT-T--AATTTGGTCATATT---------------------TCAAACAG--GCG-GTCCT-TTTTTCCATG-AAA--AAT-AG-ATTTT--AGG--AAATCT-----TGT-TA--TT--TCATCTCAG
gi|4 : aATTTACG-TC-AGAT---AC-CGTT-TTCAGG--GG--AAA-ACAGAGGAAATTCGG-CTAGAGTGCT-TACA--ATTG---TTTTTGT-TT-ATCT-GGAAAA-AAA-AAT-AATTGGCATATCAAT-----TGCTTC-T-AACGAAAATAT-T--AAA-GTATTCGATAT--CGT--AACA---TTT--AAC----CTTTGCCTAAATTT-CTT--TG--TGGGGAAATAGGC-T-G-A-TCTGTTAGTAG-TAG-TT--AGATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCTA-CATATC-TTTTAT-ATCG-AA-TCC--C---TAAAC-ATA--CCAA-TATTTTTTGT---TG-G--C-AGATA--GCTATA----A-T-ACCATCT-TT--AA--CGCA-TAGT-AA-A-AA--AA-AT---A-AA-ATAC-TTG-T-ACA-TTGA-G-TA-T-ATAT-T--T----------TTGAC-CA--TTTTCCTT-GAA-AAC-TCT-ATT-CTC--A-A-T-GA--CAC--TTTTTA--GAAGG-TAC---TGAGGAAA-TT----C-----GG--A-TTAAAT----TT-TTG----GGT-AATTTGTC-TTGGAGTT-ACA-T-GAAAA-ATA-TT-T----C-A-C--A-TCAT------------AATGTTCTGCTCA-TA-ACTA-C--TTGT-ATG-ATGGCCAT--TA-GATATATTCA-----GA--TTAT-ACCCAAT-TGTTTG-TTGTA-CGTATC-TTTGG-ATCTCCAA-CTGCT--A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--GCTA-GGTTCA-GGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-A--TAAC-ATAAATTATATAAAATTT-GTCATTTT---------------------TCAAACAA--GCGAGACCT-CTTTTCCATGAAAA--AAT-AGAATTTT--AGGAAAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|5 : aATTTATGTTC-AGATT--AC-CGTT-GTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TGTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCAAT-GCATTGCTTA-T-AATAAAA-TA--T--AAA-GTATT-AATGT--CTT--AACA---TTT--AAC----CTTTCGCT---TTT-TTT--TG--GTGGGAAATAGGCAT-G-A-TCTGTTAGTAG-TAG-TTT-AGATG-TAGA--TTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATC-TTTT-T-ATCG-AACTCA--C---T-AAC-ATA--CCAA-TA-TTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--C-CA-TAGT-AA-A-T---AA-AT---A-AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ACAT-T--T----------TTGAC-CA--TTTTCCTTTGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TT----C-----GG--ACTTAAA-----TT-TTG----GGT-TAATTGTC-TTGGAGTT-ACA-T-GAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-T-TGCACA-TATACTA-C--TTGT-ATG-AT-GCCAT--TA-GAAATATTCA-----AA--TTAT-ACTCAATTTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGAGG-T---TGTTT-CCAGGTGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATATT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|6 : TTCATGCTC-AGATTGTAT-TGTC-TGT-GATAGG--AAACACAGAGGAAATTCAGGCT-GAGTGCT-TACACAATTG---TTTTT-G-TT-ATCT-GGAAAATAAT-AA---ATTTGCAT-TCAAT-A----GCT-C-T-A-TGAAA-TAC-CG-AAA-GTATT-GATAC--TTTCTAACA---TTT--AAC----TTT-ACCT---TTT-CTT------GTGGGAAATAGACATTG-A-TCT-TT-GTAG-TAG-TTT-AGATGGTGAAATTTTCG-AATGATTCT-CAAATTA-ACTT---G-CCGATTATATT-TTTT-T-ATCG-AA-TAA--C---T-AAC-ATA--CCAACTATTTTTTATATATAAGTTCGAG-TA--GCTATAAGATA-T-ACCATCTGTT--AAC-T-CA-TAGT-AA-AATA--AA-AT---T-AA-AT-C-TTGTT-ACA-ATGAAG-TA-T-ATAT-T--T----------TTGAC-CA--TTTTC--TTGCA-AAC-TTCTATC-CTC-AA-AAT-GCA-CAT--TTTT-A--GA--GGTAC---TGAGGAAA-TA----A-----GG--A-TTAAAA----TT-TTG----GATCAATTTGTC-TTGGAGTT-ACA-T-GAAAA-ACATTT-T----C-A-C--ACCCAT------------AATG-TCTGCAC
gi|7 : atTATC-TTTT-T-ACTG-AAATCA--TGTGC-AAC------CCAA-TAAAGTGGGT---TA-TTTC-CT-CA--GCAGTGG---A-T-ACTATCT-TTC-AA--T-CA-CGGT-GA-A--A--AA-AT---T-AA-AT-C-TT---------TAA-G-TA-TCATAT-T--CAGAAAAAGTATCCAC-CA---TCTCCTTTGAG-AA---GTAATTGCTCAAA-A-T-GTA-CAT--T-----------A-TAC---TGGAGGAA-TT----CTGGGGGG--G-GGGAG-----GG-GGG----GGT-GATTTA---CTGG---T-GC--------A-ATACTTAT----C-A-C----TCATTCGAACAAACATAGTG-TCCACAAA-TAGACTGTT--TTGT-ATG-ATAATCAT--TA--ATCTAGTCA-----CA--TTA-----CAACCTGTGTG-T------ATA------GG-ATCCACAA-CTGTTC-AT-A-TTTT--C--------------TCCA---TCAA--CA-T-T--GTTC-AGTTCAGAGG-T---TGTTT-ACA--AGG--CAACGA-ACTT-AC-AAAT-G-----TA
gi|8 : AGTTG-ATGTTCAG-TCGATCATAC---TTT-T-ATTG-AAGTCA--C---T-GAC-ATA--CCCA-TATTTTTTGT---TACATTT--G-TA--CCTATGA---A-T-ACCTTCT-TT--AA--------AATGAA-A-TA--AA-ATTTTA-AATAT-C-TAATT-ACG-TTCA-A-TA-TCAT-T-T--T----------CCAAC-AA--TTTTTCTTGAAA-AATATGTGATA-A---AA-A-T--AC-CAT--TTTTCAAAGA--G--AC---TGAGGAAA-TT----C-----GG--A-C--AATTTTTTT-TTT----CGT-TATTTCCT-TTGGCATT-ACATT-CAAAA-ACACTT-T----T-A-CCTA-TC--------------AGTG-TCCAGACA-TAGACAG-T--TTCA-ATG-ATGACCAT--
gi|9 : atgtgaaaatatgaacaagggc--A-TCAT------------AATG-TCTGCACA-TATACTA-C--TTGT-AAG-ATGGCCAT--TA-AATATATTCA-----AA--TTCT-ACTCAATTTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TCG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGTG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATTTT---------------------TCAAACAA--GC--------------CATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTAACTAAATATGATTTTCTTCTCTTGAAAAATATGTTATAAAAGTGTCATTTTTCAATGAGACAGAGGAAATTCGG
Alignments
lowQualScore : 11 111 33333 1111 111 1111 111111 1 1 111 1 11 2222 1 11111 11111 1 1 2222222222222 1 1 1 111 111111 1111111111 11 22222 1111 222222222222 11 11111 1 11 11 11111 444444444444444444444 11
lowQualScore : 5 77 888 5 5 77 33 5 5 77 000 1 5 5 5 5 55 5 22222 5 5 5 3333 5 77 77 77 000 77 2222 888 5 000000 0 5 666 6 6 6 6 1 6 6 6 5 5 5 55 5 5 0 8 66 888 5 5 66 5 0 333 0 8888 66 9999 5 5 5 11 4444 5 0 5 55555 5 11111 0 5 5 0 5 55 5 5 5 0 5 6666666666666 6 0 777 0 0 5 5 4 5 5 111 5 77 66 2 333333 5 888 5 3333333333 22 4 00000 4 9999 8 4 1 4 4 8 4 1 4 8888 4 4 0000 555555555555 3 4 0 8 55 4 4 66 00 1 11111 66 4 2 5 0 8 4 4 4 4 00 4 4 8888888 4 66 4 4 66 4 88888 4 55 55 4 4 4 4 11111 0 5 1 222222222222222222222 11 0 3 55 3 3 88 3 99999 7 3 55 4
lowQualScore : . .. ... . . .. .. . . .. ... . . . . . .. . ..... . . . .... . .. .. .. ... .. .... ... . ...... . . ... . . . . . . . . . . . .. . . . . .. ... . . .. . . ... . .... .. .... . . . .. .... . . . ..... . ..... . . . . . .. . . . . . ............. . . ... . . . . . . . ... . .. .. . ...... . ... . .......... .. . ..... . .... . . . . . . . . . .... . . .... ............ . . . . .. . . .. .. . ..... .. . . . . . . . . . .. . . ....... . .. . . .. . ..... . .. .. . . . . ..... . . . ..................... .. . . .. . . .. . ..... . . .. .
lowQualScore : 7 99 777 7 7 99 66 7 7 99 000 4 7 7 7 7 99 7 11111 7 7 7 9999 7 44 99 99 000 99 1111 888 7 999999 7 7 111 7 7 7 7 3 7 7 7 7 7 7 22 0 0 0 8 99 888 0 0 99 0 4 888 0 2222 99 0000 0 0 0 99 6666 0 0 0 99999 0 22222 0 0 0 1 0 55 0 0 0 0 0 6666666666666 2 0 222 1 8 0 0 5 0 0 000 0 55 99 0 666666 0 888 0 3333333333 22 4 00000 4 4444 9 4 8 4 4 9 4 3 0 5555 0 0 1111 999999999999 6 0 7 0 55 0 0 11 22 0 11111 11 4 7 3 0 9 4 4 4 4 66 4 4 3333333 4 11 4 4 11 4 77777 4 55 00 0 4 4 4 11111 1 0 0 555555555555555555555 99 3 6 00 6 6 66 6 11111 3 6 00 4
consensus : ATTTATGCTC-AGATT--AA-CGTT-TTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCAAT-G-ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AAC----TTTTGCCT---TTT-CTT--TG--GGGGGAAATAGACAT-G-A-TCTGTTAGTAG-TAG-TTT-AGATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATC-TTTT-T-ATCG-AACTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--T-CA-TAGT-AA-A-TA--AA-AT---A-AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ATAT-T--T----------TCGAC-CA--TTTTCCTTNGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TT----C-----GG--A-TTAAA-----TT-TTG----GGT-AATTTGTC-TTGGAGTT-ACA-T-GAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-TCTGCACA-TATACTA-C--TTGT-ATG-ATGGCCAT--TA-GANATATTCA-----GA--TTAT-ACCCAATNTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATNTT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
Reference ( family-2394 ) : ATTTATGCTC-AGATT--AA-CGTT-TTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCAAT-G-ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AAC----TTTTGCCT---TTT-CTT--TG--GGGGGAAATAGACAT-G-A-TCTGTTAGTAG-TAG-TTT-AGATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATC-TTTT-T-ATCG-AACTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--T-CA-TAGT-AA-A-TA--AA-AT---A-AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ATAT-T--T----------TCGAC-CA--TTTTCCTTNGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TT----C-----GG--A-TTAAA-----TT-TTG----GGT-AATTTGTC-TTGGAGTT-ACA-T-GAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-TCTGCACA-TATACTA-C--TTGT-ATG-ATGGCCAT--TA-GANATATTCA-----GA--TTAT-ACCCAATNTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATNTT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|1 : ATTTATGCTCGAGATT--AA-TGTTCTTC-GG--GGGAAAA-ACAGAGGAAATTCGGGCTAGAGTGCTATACA--ATTG---TTTTTTGTTT-ATCT-GGAAAA-AATGAATAAATTTGCTAATCAAC-T-GTTCCTTC-TGAATGAAA-TACGCGAAAA-GTATT--ATAT--CTT---ACATTTTTT--AAC----TTTTGCCT---TTTACTTTGTG--GGGGAAAATAGACAT-G-ATTCTGTTAGTAGATAG-TTT-AAATG-TGAAATTTTTG-AAT-AT-CT-CAAATTATACTTTC-GTTCGATTAT-TC-TTTT-TAATCGAAACTCACCC---T-AAC-ATACGCCAA-TATTTTTTGT---TA-GTTT-CA-TA--GCTATTG---A-TAACCATCT-TT--AAACT-CATTAGT-AACA-TATTAATAT---ATAA-GT-C-TTGTTGACATATGA-G-TATT-ATAT-TG-T----------TTGACGCAATTCTTCCTTAGAACAAC-TCTATCC-TTC-AAGA-TGGAC-CATTGTTTTTG--AG--G-TACTTTTGAGGAAA-TTTCAAC-----GGTAA-TTAAA-----TT-TTGATAAAGT-ATCTTGTCGTTGGCGTTGACA-T-GAAAAGATTTTT-TTCTAC-ACC--A-TCATG-----------AATG-TCTGCACA-TGTGACA-CCTTTTT-ATGCATGGCCATTCTACGAAATATTCAAAATTGA--GTAT-TCAAAATGTGTTTGTTTGTACCATATCATTTGG-ATCTCCAAGCTGCTACAATA-TTTTACGG-TTG---GTATG-TGC---TTCAA--CA-TCT--ACTGTGGTTCAGGGGTT---TGTTT-CAA--TGGA-AAATGA-ATCG-ACTTAACAA-----TATGTAAAA-TT-GTCATATT---------------------TCAAACAGTTGCGAGTCCTGCTTTTCCATGAAAAATAAT-AG-ATTTTA-AGG-AAAATCT-----TGTGTAC-TTACTCATCTCAGCATCATATTCCCCTT
gi|10 : aATTCA-----GA--TTAT-ACCCAATTTGTTTG-TTGTA-AATGTC-TTTGG-ATCTCCAA-CTGCAA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--GCTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAATGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATTTT---------------------TCAAACAA--GCGAGACCT-CTTTTCCATG-AAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTTAGCATCATA-TCCCCTTAc
gi|11 : ATTTATGCTC-AGATT--AA-TGTT-TTC-AG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCA-----ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AACTTAATTTTGCCT---T
gi|12 : a--TGG--AAACGA-ATTC-AC-TATC-A-----TATGTAAAATTT-GTCATTTTTCGAACAGGCGATACCTCTTTTCAAACAG--GCGATACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGC-TAC-TT--TCATCTCAGCATCATA-TCCTC
gi|13 : T----C-----GG--A-TTAAA-----TT-TTG----AGT-AATTTGTC-TT-GAGTT-ACA-TAAAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-TCAGCTCA-TATACTA-C--TTGT-ATG-ATGGCTAT--TA-AATATATTCA-----GA--TTAT-ACCCAATTTG
gi|14 : TA-CATATC-TTTAA-ATCTACCA-CTGCTA-A--A-TTTCGACG-TTATCTG---G-T---TTTTCAA--CA-T-TGGAC---AGTTCGGAGA-TATCTCCTTGCCA--TGATTAAACGATATT
gi|15 : aGAGACCT-CCTTGCCATGATTA--AAC-GA-TTTTT--ATA-AAAATCTAATTATATGTAC-TT--TCATCTCAGCATCATA-TCCCCCTAga
gi|16 : tttaagtaaaaGAGACCT-CCTCGCCATGATTA--AAC--G-ATTTTTTACG-AAAATCC-----AAT-TAC-TT--TCATCTCAGCATCATA-TTCCCTT
gi|18 : caaaaGAGACCT-CCTTGCCATGATTA--CAC-GA-TTTTT--ATG-AAAATCT-----AAT-TACATT--T
gi|19 : ttcgaaaATTT-T----C-A-C--A-TCAT------------ATTG-TCTGCACA-TATGCTA-C--TTGT-ATG-ATGGgta
gi|2 : ATTTATGCTC-AGATT--AAATGTT-TTC-GG--GGG-AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TTTATCTTGGAAAA-AAT-GAT-AATTTGCATAT--ATCA-ATTCCTTC-T-AATGAAA-TAC-C--AAAAGTATT-ATTAT--CTT--A-CA---TTTTTAAC----TTTTGCTT---TTA-CTT--TGTGGGGGAAAATAGACAT-A-T-TCTGTTAGTAG-TAG-TTTAAGATG-TGAAA-TTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTTT-T-ATCGAAACTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AAACT-CA-TAGTAAA-A-TA--TA-AT---A-CATAT-C-TTGTT-ACA-ATGA-G-TA-T-ATATATTGT----------TTGACGCA--TTTTCCTT-GAA-AAC-TCT-ATC-CTC-AAGA-T-GAC-CAT--TTTTTG--AG--G-TAC---TGAGGATA-TT----C-----GGATA-TTAAA-----TTATTG----AGTAAATTTGTC-TTGGAGTT-ACA-T-GAAAA-ATTTTT-T----CTA-CA-A-TCATG-----------AATG-TCTGCACA-TCTACTA-C--TTTTAATG--TGGCCAT--TA-GAAATATTCA-----AA--TTATAATTCAATGTG-TTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--ATTTTTAGCGATTG---G---GATG-ATTTTCAA--CA-T-T--ACTA-GTGTCATGGG-T---TGTTT-CCA--TGGGAAAATGA-ATTC-AC-TAAC-A-----TATGTAAAAGTT-GTCATATT---------------------TCAAACAGT-GCGAGTCCT-CTTTTCCATGAAAA--AATAAG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCC
gi|20 : aCCT---TTT-CTT--TG--TGGGGAAATAGACAT-G-A-TCCGTTAGT
gi|3 : ATTTATGCTC-AGATT--AA-TGTT-TTC-GG--GG--AAA-ACAGAAGAAATTCGGGCTAGAGTGCT-TACA--AGTGGTTTTTTTTT-TT-ATCT-GG-AAA-AAT--AT-AATTTGCATATCAAT-G---TGCTTCTT-AATGAAA-TAC-C--AAA-GTATT-GATATTCTTT--AACA---CTT--AAC----TTTTGCCT---TTT-CTT--TT--GTGGG-AATAGACAT-GAA-TCTGTTAGTAG-TAGTTTT-AGATG-TGAAA--TTTGAAATGAT-CTCCAAATTA-ATTTTC-G-TCGATTATATT-TTTT-A-ATCG-AACTCA--C---T-AATAATA--CCAA-TATTTTTTGCA--TA-GTTC-AG-TAGCGCTATAG---ATT-ACCATCT-TTGAAA--T-CA-TAGT-AA-A-AT--AA-AT---A-AA-AT-CTTTGTT-ACA-A-GA-GTTG-T-ATAT-T--T----------T-GAC-CA--ATTTCC-TGGAA-AAC-TCT-ATC-CTC-AA-ATT-GACAAAT--GTTTTA--GAG-G-TAC---TGAGGAAATTT----C-----GG--A-TTAAA--------TTG----GGA-AATTTGTC-TTGGAGTT-ACA-TGGAAAA-ATAGTT-T----C-A-A--T-TCAT------------AATG-TCTGCACATTATACTAGC--TTGT-ATG-ATGGTCAT--TATGAAATATTCA-----AAATTTAT-ACTCAATGTGTTTGTTTGTAGCATATC-TTTGGAATCTCCAA-CTGCTA-A--A--TTTAGCG-TTG---G---G-TGCATTTTCAAGCCATT-T--ACTA-GGTTCAGGGG-----TGTTT-CCA--TGG--AAACGA-ATTCAAC-TAA--A-----TAT-T--AATTTGGTCATATT---------------------TCAAACAG--GCG-GTCCT-TTTTTCCATG-AAA--AAT-AG-ATTTT--AGG--AAATCT-----TGT-TA--TT--TCATCTCAG
gi|4 : aATTTACG-TC-AGAT---AC-CGTT-TTCAGG--GG--AAA-ACAGAGGAAATTCGG-CTAGAGTGCT-TACA--ATTG---TTTTTGT-TT-ATCT-GGAAAA-AAA-AAT-AATTGGCATATCAAT-----TGCTTC-T-AACGAAAATAT-T--AAA-GTATTCGATAT--CGT--AACA---TTT--AAC----CTTTGCCTAAATTT-CTT--TG--TGGGGAAATAGGC-T-G-A-TCTGTTAGTAG-TAG-TT--AGATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCTA-CATATC-TTTTAT-ATCG-AA-TCC--C---TAAAC-ATA--CCAA-TATTTTTTGT---TG-G--C-AGATA--GCTATA----A-T-ACCATCT-TT--AA--CGCA-TAGT-AA-A-AA--AA-AT---A-AA-ATAC-TTG-T-ACA-TTGA-G-TA-T-ATAT-T--T----------TTGAC-CA--TTTTCCTT-GAA-AAC-TCT-ATT-CTC--A-A-T-GA--CAC--TTTTTA--GAAGG-TAC---TGAGGAAA-TT----C-----GG--A-TTAAAT----TT-TTG----GGT-AATTTGTC-TTGGAGTT-ACA-T-GAAAA-ATA-TT-T----C-A-C--A-TCAT------------AATGTTCTGCTCA-TA-ACTA-C--TTGT-ATG-ATGGCCAT--TA-GATATATTCA-----GA--TTAT-ACCCAAT-TGTTTG-TTGTA-CGTATC-TTTGG-ATCTCCAA-CTGCT--A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--GCTA-GGTTCA-GGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-A--TAAC-ATAAATTATATAAAATTT-GTCATTTT---------------------TCAAACAA--GCGAGACCT-CTTTTCCATGAAAA--AAT-AGAATTTT--AGGAAAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|5 : aATTTATGTTC-AGATT--AC-CGTT-GTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TGTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCAAT-GCATTGCTTA-T-AATAAAA-TA--T--AAA-GTATT-AATGT--CTT--AACA---TTT--AAC----CTTTCGCT---TTT-TTT--TG--GTGGGAAATAGGCAT-G-A-TCTGTTAGTAG-TAG-TTT-AGATG-TAGA--TTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATC-TTTT-T-ATCG-AACTCA--C---T-AAC-ATA--CCAA-TA-TTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--C-CA-TAGT-AA-A-T---AA-AT---A-AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ACAT-T--T----------TTGAC-CA--TTTTCCTTTGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TT----C-----GG--ACTTAAA-----TT-TTG----GGT-TAATTGTC-TTGGAGTT-ACA-T-GAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-T-TGCACA-TATACTA-C--TTGT-ATG-AT-GCCAT--TA-GAAATATTCA-----AA--TTAT-ACTCAATTTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGAGG-T---TGTTT-CCAGGTGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATATT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|6 : TTCATGCTC-AGATTGTAT-TGTC-TGT-GATAGG--AAACACAGAGGAAATTCAGGCT-GAGTGCT-TACACAATTG---TTTTT-G-TT-ATCT-GGAAAATAAT-AA---ATTTGCAT-TCAAT-A----GCT-C-T-A-TGAAA-TAC-CG-AAA-GTATT-GATAC--TTTCTAACA---TTT--AAC----TTT-ACCT---TTT-CTT------GTGGGAAATAGACATTG-A-TCT-TT-GTAG-TAG-TTT-AGATGGTGAAATTTTCG-AATGATTCT-CAAATTA-ACTT---G-CCGATTATATT-TTTT-T-ATCG-AA-TAA--C---T-AAC-ATA--CCAACTATTTTTTATATATAAGTTCGAG-TA--GCTATAAGATA-T-ACCATCTGTT--AAC-T-CA-TAGT-AA-AATA--AA-AT---T-AA-AT-C-TTGTT-ACA-ATGAAG-TA-T-ATAT-T--T----------TTGAC-CA--TTTTC--TTGCA-AAC-TTCTATC-CTC-AA-AAT-GCA-CAT--TTTT-A--GA--GGTAC---TGAGGAAA-TA----A-----GG--A-TTAAAA----TT-TTG----GATCAATTTGTC-TTGGAGTT-ACA-T-GAAAA-ACATTT-T----C-A-C--ACCCAT------------AATG-TCTGCAC
gi|7 : atTATC-TTTT-T-ACTG-AAATCA--TGTGC-AAC------CCAA-TAAAGTGGGT---TA-TTTC-CT-CA--GCAGTGG---A-T-ACTATCT-TTC-AA--T-CA-CGGT-GA-A--A--AA-AT---T-AA-AT-C-TT---------TAA-G-TA-TCATAT-T--CAGAAAAAGTATCCAC-CA---TCTCCTTTGAG-AA---GTAATTGCTCAAA-A-T-GTA-CAT--T-----------A-TAC---TGGAGGAA-TT----CTGGGGGG--G-GGGAG-----GG-GGG----GGT-GATTTA---CTGG---T-GC--------A-ATACTTAT----C-A-C----TCATTCGAACAAACATAGTG-TCCACAAA-TAGACTGTT--TTGT-ATG-ATAATCAT--TA--ATCTAGTCA-----CA--TTA-----CAACCTGTGTG-T------ATA------GG-ATCCACAA-CTGTTC-AT-A-TTTT--C--------------TCCA---TCAA--CA-T-T--GTTC-AGTTCAGAGG-T---TGTTT-ACA--AGG--CAACGA-ACTT-AC-AAAT-G-----TA
gi|8 : AGTTG-ATGTTCAG-TCGATCATAC---TTT-T-ATTG-AAGTCA--C---T-GAC-ATA--CCCA-TATTTTTTGT---TACATTT--G-TA--CCTATGA---A-T-ACCTTCT-TT--AA--------AATGAA-A-TA--AA-ATTTTA-AATAT-C-TAATT-ACG-TTCA-A-TA-TCAT-T-T--T----------CCAAC-AA--TTTTTCTTGAAA-AATATGTGATA-A---AA-A-T--AC-CAT--TTTTCAAAGA--G--AC---TGAGGAAA-TT----C-----GG--A-C--AATTTTTTT-TTT----CGT-TATTTCCT-TTGGCATT-ACATT-CAAAA-ACACTT-T----T-A-CCTA-TC--------------AGTG-TCCAGACA-TAGACAG-T--TTCA-ATG-ATGACCAT--
gi|9 : atgtgaaaatatgaacaagggc--A-TCAT------------AATG-TCTGCACA-TATACTA-C--TTGT-AAG-ATGGCCAT--TA-AATATATTCA-----AA--TTCT-ACTCAATTTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TCG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGTG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATTTT---------------------TCAAACAA--GC--------------CATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTT
blockSeqs : . GT AAT . A TA G C . CA GTT T . T T T A . CAAT T . A CG A CG TC CT . TT TTAA AAA . TGTG T AA . T A G T A T C . A . CT A . A C . GTG A A . C ATA A AGA GC AGAT T . G GA ACT . A . ATA . TTTA T A T . A A T . C A CAGAAAAAGTA T G T G . A A G A GA . CA . T GAAG G . T CTGGGG AT C TTTTT A . A . A . T A . T A . T . CTA TCGAACAAACAT T T G . A . . TG T . AT A C T T G . A . . T T A TCTG A GC T . GG . TATC G GG TT T A . . TAAAT G T TCGAACAGGCGATACCTCTTT T . . A A TT A AATTA G A . .
blockSeqs : . . AT . . . . . . . . T . . . . G . GCAT . . . C . G . . . . . . . TG . T . . . . T . . . . . . T . . . C . . . . . . A C GAG . G . . . C CG . G . TA . A T . . . A . . . C . TGT T . A T . . T . . AT . C . T AAGA . . . C . . T . . C . A . . G . T . . . . AA G . . T . . . . A A . . . C T . . . . . . . . . G . . . . . . T . . GA . . . . . . T . . . . . . . . . . . . .
blockSeqs : . . AT . . . . . . . . T . . . . A . AT . . . C . A . . . . . . . TT . A . . . . . . . . . . . C . . . C . . . . . . . . AG . G . . . . CT . . . AT . A . . . . T . . . . . T T . T T . . A . . AA . C . T GAG . . . C . . A . . . . A . . . . T . . . . AC . . . . . . . . G A . . . T G . . . . . . . . . G . . . . . . T . . . . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . CC . . . . . . . . G . . . . A . G . . . C . G . . . . . . . TG . A . . . . . . . . . . . C . . . A . . . . . . . . AG . G . . . . T . . . AA . A . . . . A . . . . . T T . T T . . G . . A . A . T AG . . . C . . . . . . . A . . . . G . . . . A . . . . . . . . G T . . . T G . . . . . . . . . G . . . . . . T . . . . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . CC . . . . . . . . T . . . . A . A . . . T . A . . . . . . . TG . A . . . . . . . . . . . T . . . G . . . . . . . . AG . G . . . . C . . . TA . A . . . . A . . . . . T C . T G . . . . . A . A . C GA . . . C . . . . . . . A . . . . T . . . . A . . . . . . . . G A . . . C T . . . . . . . . . G . . . . . . T . . . . . . . . . T . . . . . . . . . . . . .
blockSeqs : . . TT . . . . . . . . . . . . . . . . . . . T . G . . . . . . . . . A . . . C . . . . . . . . . . . . CT . A . . . . T . . . T . T . . . . T . . . . . T C . T . . . . . . A . C . . GA . . . C . . . . . . . A . . . . T . . . . T . . . . . . . . A T . . . T C . . . . . . . . . G . . . . . . T . . . . . . . . . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . G . . . . . . . . . . A . T . . . . . . . . . . T . . . . . . . . . A . . . . . . . . A . . . . . . . C . . . . C . . . . A . . . . . . . . . T . . . T T . . . . . . . . . G . . . . . . T . . . . . . . . . T . . . . . . . . . . . . .
blockSeqs : C . . . . . . . . . . . . C . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons : ** A* AT*** C*** G* *** TG**** A** ** ** T*** NA*** A**** A* T************ T** A** ** *** C********* ** **** **** ************ ** ** G* ***** ** G****** T**** ** ** ** ** **
originalCons : ATTTATGCTC-AGATT--AA-CGTT-TTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATATCAAT-G-ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AAC----TTTTGCCT---TTT-CTT--TG--GGGGGAAATAGACAT-G-A-TCTGTTAGTAG-TAG-TTT-AGATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATC-TTTT-T-ATCG-AACTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--T-CA-TAGT-AA-A-TA--AA-AT---A-AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ATAT-T--T----------TCGAC-CA--TTTTCCTTNGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TT----C-----GG--A-TTAAA-----TT-TTG----GGT-AATTTGTC-TTGGAGTT-ACA-T-GAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-TCTGCACA-TATACTA-C--TTGT-ATG-ATGGCCAT--TA-GANATATTCA-----GA--TTAT-ACCCAATNTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATNTT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
finalCons : ATTTATGCTC-AGATT--AA-CGTT-TTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AATA-AT-AATTTGCATATCAATAT---TGCTTC-T-AATGAAA-TACC---AAA-GTATTG-ATAT--CTT--AACA---TTT--AAC----TTTTGCCT---TTT-CTTTG----GGGGGAAATAGACAT-GA--TCTGTTAGTAG-TAG-TTT-AGATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATC-TTTT-T-ATCG-AACTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AAT---CA-TAGT-AA-ANA---AA-ATA----AA-AT-C-TTGTT-ACAA-TGA-G-TA-T-ATAT-TT------------TCGAC-CAT--TTTCCTTNGAA-AAC-TCTAATC-CTC-AAA--T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TTC---------GG--A-TTAAA-----TT-TTG----GGT-AATTTGTC-TTGGAGTT-ACA-T-GAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-TCTGCACA-TATACTA-C--TTGT-ATG-ATGGCCAT--TAG-ANATATTCA-----GA--TTAT-ACCCAATNTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTGG------G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGGGT----TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATNTT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTAACTAAATATGATTTTCTTCTCTTGAAAAATATGTTATAAAAGTGTCATTTTTCAATGAGACAGAGGAAATTCGG
Alignments
lowQualScore : 11 111 222222 1111 111 1111 111111 1 11 111 1 11 2222 11111 11111 1 1 222222222222 1 1 111 111111 1111111111 22222 1111 222222222222 11 11111 1 11 11 11111 444444444444444444444 11
lowQualScore : 5 77 888 5 5 77 33 5 5 77 000 1 5 5 5 5 55 5 77 999999 5 5 5 8888 5 77 77 77 000 77 2222 888 5 000000 0 5 666 6 6 6 6 3 1 6 6 6 5 5 5 0 5 0 5 33 66 888 5 5 66 5 0 333 0 8888 66 9999 5 5 5 11 4444 5 5 5 55555 5 5 11111 0 5 5 0 5 55 5 5 5 0 66 444444444444 6 0 777 0 0 5 5 88 5 5 111 5 77 66 2 333333 5 888 5 3333333333 66 4 66 00000 4 9999 4 4 4 1 4 4 8 4 1 4 8888 4 4 0000 555555555555 3 4 0 8 55 4 4 66 00 1 11111 66 4 2 5 0 8 4 4 4 4 00 4 4 8888888 4 66 4 4 66 4 88888 4 55 55 4 4 4 4 11111 0 5 1 222222222222222222222 11 0 3 55 3 3 88 3 99999 7 3 55 4
lowQualScore : . .. ... . . .. .. . . .. ... . . . . . .. . .. ...... . . . .... . .. .. .. ... .. .... ... . ...... . . ... . . . . . . . . . . . . . . . . .. .. ... . . .. . . ... . .... .. .... . . . .. .... . . . ..... . . ..... . . . . . .. . . . . .. ............ . . ... . . . . .. . . ... . .. .. . ...... . ... . .......... .. . .. ..... . .... . . . . . . . . . . .... . . .... ............ . . . . .. . . .. .. . ..... .. . . . . . . . . . .. . . ....... . .. . . .. . ..... . .. .. . . . . ..... . . . ..................... .. . . .. . . .. . ..... . . .. .
lowQualScore : 7 99 777 7 7 99 66 7 7 99 000 4 7 7 7 7 99 7 99 111111 7 7 7 7777 7 44 99 99 000 99 1111 888 7 999999 7 7 111 7 7 7 7 2 7 7 7 7 7 7 7 2 0 0 0 88 99 888 0 0 99 0 1 888 0 2222 99 0000 0 0 0 99 6666 0 0 0 22222 0 0 22222 0 0 0 1 0 55 0 0 0 0 99 888888888888 2 0 222 1 8 0 0 88 0 0 000 0 55 99 0 666666 0 888 0 3333333333 11 4 11 00000 4 4444 4 4 4 8 4 4 9 4 3 0 5555 0 0 1111 999999999999 6 0 7 0 55 0 0 11 22 0 11111 11 4 7 3 0 9 4 4 4 4 66 4 4 3333333 4 11 4 4 11 4 77777 4 55 00 0 4 4 4 11111 1 0 0 555555555555555555555 99 3 6 00 6 6 66 6 11111 3 6 00 4
consensus : ATTTATGCTC-AGATT--AA-CGTT-TTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATAT--CAA-T--ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AAC----TTTTGCCT---TTT-CTT--TG--GGGGGAAATAGACAT-G-A-TCTGTTAGTAG-TAG-TTTA-GATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-T-ATCG-AA-CTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--T-CA-TAGT-AA-AN-A--A-A-AT---A-AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ATAT--T-T----------TCGAC-CA--TTTTCCTTNGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TT----C-----GG--A-T--TAAA-----TT-TTG----GGT-AA-TTTGTC-TTGGAGTT-ACA-T-GAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-TCTGCACA-TATACTA-C--TTGT-ATG-ATGGCCAT--TA-GANATATTCA-----GA--TTAT-ACCCAATNTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATNTT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
Reference ( family-2394 ) : ATTTATGCTC-AGATT--AA-CGTT-TTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATAT--CAA-T--ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AAC----TTTTGCCT---TTT-CTT--TG--GGGGGAAATAGACAT-G-A-TCTGTTAGTAG-TAG-TTTA-GATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-T-ATCG-AA-CTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--T-CA-TAGT-AA-AN-A--A-A-AT---A-AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ATAT--T-T----------TCGAC-CA--TTTTCCTTNGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TT----C-----GG--A-T--TAAA-----TT-TTG----GGT-AA-TTTGTC-TTGGAGTT-ACA-T-GAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-TCTGCACA-TATACTA-C--TTGT-ATG-ATGGCCAT--TA-GANATATTCA-----GA--TTAT-ACCCAATNTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATNTT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|1 : ATTTATGCTCGAGATT--AA-TGTTCTTC-GG--GGGAAAA-ACAGAGGAAATTCGGGCTAGAGTGCTATACA--ATTG---TTTTTTGTTT-ATCT-GGAAAA-AATGAATAAATTTGCTAAT--CAACT--GTTCCTTC-TGAATGAAA-TACGCGAAAA-GTATT--ATAT--CTT---ACATTTTTT--AAC----TTTTGCCT---TTTACTTTGTG--GGGGAAAATAGACAT-G-ATTCTGTTAGTAGATAG-TTTA-AATG-TGAAATTTTTG-AAT-AT-CT-CAAATTATACTTTC-GTTCGATTAT-TCTTTT-TAATCGAAA-CTCACCC---T-AAC-ATACGCCAA-TATTTTTTGT---TA-GTTT-CA-TA--GCTATTG---A-TAACCATCT-TT--AAACT-CATTAGT-AACAT-ATTA-ATAT---ATAA-GT-C-TTGTTGACATATGA-G-TATT-ATAT--TGT----------TTGACGCAATTCTTCCTTAGAACAAC-TCTATCC-TTC-AAGA-TGGAC-CATTGTTTTTG--AG--G-TACTTTTGAGGAAA-TTTCAAC-----GGTAA-T--TAAA-----TT-TTGATAAAGT-AT-CTTGTCGTTGGCGTTGACA-T-GAAAAGATTTTT-TTCTAC-ACC--A-TCATG-----------AATG-TCTGCACA-TGTGACA-CCTTTTT-ATGCATGGCCATTCTACGAAATATTCAAAATTGA--GTAT-TCAAAATGTGTTTGTTTGTACCATATCATTTGG-ATCTCCAAGCTGCTACAATA-TTTTACGG-TTG---GTATG-TGC---TTCAA--CA-TCT--ACTGTGGTTCAGGGGTT---TGTTT-CAA--TGGA-AAATGA-ATCG-ACTTAACAA-----TATGTAAAA-TT-GTCATATT---------------------TCAAACAGTTGCGAGTCCTGCTTTTCCATGAAAAATAAT-AG-ATTTTA-AGG-AAAATCT-----TGTGTAC-TTACTCATCTCAGCATCATATTCCCCTT
gi|10 : aATTCA-----GA--TTAT-ACCCAATTTGTTTG-TTGTA-AATGTC-TTTGG-ATCTCCAA-CTGCAA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--GCTA-GGTTCAGGGG-T---TGTTT-CCA--TGG--AAATGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATTTT---------------------TCAAACAA--GCGAGACCT-CTTTTCCATG-AAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTTAGCATCATA-TCCCCTTAc
gi|11 : ATTTATGCTC-AGATT--AA-TGTT-TTC-AG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATAT--CA-----ATTGCTTC-T-AATGAAA-TAC-C--AAA-GTATT-GATAT--CTT--AACA---TTT--AACTTAATTTTGCCT---T
gi|12 : a--TGG--AAACGA-ATTC-AC-TATC-A-----TATGTAAAATTT-GTCATTTTTCGAACAGGCGATACCTCTTTTCAAACAG--GCGATACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGC-TAC-TT--TCATCTCAGCATCATA-TCCTC
gi|13 : T----C-----GG--A-T--TAAA-----TT-TTG----AGT-AA-TTTGTC-TT-GAGTT-ACA-TAAAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-TCAGCTCA-TATACTA-C--TTGT-ATG-ATGGCTAT--TA-AATATATTCA-----GA--TTAT-ACCCAATTTG
gi|14 : TA-CATATC-TTTAA-ATCTACCA-CTGCTA-A--A-TTTCGACG-TTATCTG---G-T---TTTTCAA--CA-T-TGGAC---AGTTCGGAGA-TATCTCCTTGCCA--TGATTAAACGATATT
gi|15 : aGAGACCT-CCTTGCCATGATTA--AAC-GA-TTTTT--ATA-AAAATCTAATTATATGTAC-TT--TCATCTCAGCATCATA-TCCCCCTAga
gi|16 : tttaagtaaaaGAGACCT-CCTCGCCATGATTA--AAC--G-ATTTTTTACG-AAAATCC-----AAT-TAC-TT--TCATCTCAGCATCATA-TTCCCTT
gi|18 : caaaaGAGACCT-CCTTGCCATGATTA--CAC-GA-TTTTT--ATG-AAAATCT-----AAT-TACATT--T
gi|19 : ttcgaaaATTT-T----C-A-C--A-TCAT------------ATTG-TCTGCACA-TATGCTA-C--TTGT-ATG-ATGGgta
gi|2 : ATTTATGCTC-AGATT--AAATGTT-TTC-GG--GGG-AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TTTTTTG-TTTATCTTGGAAAA-AAT-GAT-AATTTGCATATATCAA-T----TCCTTC-T-AATGAAA-TAC-C--AAAAGTATT-ATTAT--CTT--A-CA---TTTTTAAC----TTTTGCTT---TTA-CTT--TGTGGGGGAAAATAGACAT-A-T-TCTGTTAGTAG-TAG-TTTAAGATG-TGAAATTTT-G-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-TTATCG-AAACTCA--C---T-AAC-ATA--CCAA-TATTTTTTGT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AAACT-CA-TAGT-AA-AA-T--ATA-AT---A-CATAT-C-TTGTT-ACA-ATGA-G-TA-T-ATATATTGT----------TTGACGCA--TTTTCCTT-GAA-AAC-TCTA-TC-CTC-AAGA-T-GAC-CAT--TTTTTG--AG--G-TAC---TGAGGATA-TT----C-----GG--A-TATTAAA-----TTATTG----AGT-AAATTTGTC-TTGGAGTT-ACA-T-GAAAA-ATTTTT-T----CTA-C--AATCATG-----------AATG-TCTGCACA-TCTACTA-C--TTTTAATG--TGGCCAT--TA-GAAATATTCA-----AA--TTATAATTCAATGTG-TTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--ATTTTTAGCGATTG---G---GATG-ATTTTCAA--CA-T-T--ACTA-GTGTCATGGG-T---TGTTT-CCA--TGGGAAAATGA-ATTC-AC-TAAC-A-----TATGTAAAAGTT-GTCATATT---------------------TCAAACAGT-GCGAGTCCT-CTTTTCCATGAAAA--AATAAG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCC
gi|20 : aCCT---TTT-CTT--TG--TGGGGAAATAGACAT-G-A-TCCGTTAGT
gi|3 : ATTTATGCTC-AGATT--AA-TGTT-TTC-GG--GG--AAA-ACAGAAGAAATTCGGGCTAGAGTGCT-TACA--AGTGGTTTTTTTTT-TT-ATCT-GG-AAA-AAT--AT-AATTTGCATAT--CAA-T--G-TGCTTCTT-AATGAAA-TAC-C--AAA-GTATT-GATATTCTTT--AACA---CTT--AAC----TTTTGCCT---TTT-CTT--TT--GTGGG-AATAGACAT-GAA-TCTGTTAGTAG-TAGTTTTA-GATG-TGAAA--TTTGAAATGAT-CTCCAAATTA-ATTTTC-G-TCGATTATATTTTTT-A-ATCG-AA-CTCA--C---T-AATAATA--CCAA-TATTTTTTGCA--TA-GTTC-AG-TAGCGCTATAG---ATT-ACCATCT-TTGAAA--T-CA-TAGT-AA-AA-T--A-A-AT---A-AA-AT-CTTTGTT-ACA-A-GA-GTTG-T-ATAT--T-T----------T-GAC-CA--ATTTCC-TGGAA-AAC-TCT-ATC-CTC-AA-ATT-GACAAAT--GTTTTA--GAG-G-TAC---TGAGGAAATTT----C-----GG--A-T--TAAA--------TTG----GGA-AA-TTTGTC-TTGGAGTT-ACA-TGGAAAA-ATAGTT-T----C-A-A--T-TCAT------------AATG-TCTGCACATTATACTAGC--TTGT-ATG-ATGGTCAT--TATGAAATATTCA-----AAATTTAT-ACTCAATGTGTTTGTTTGTAGCATATC-TTTGGAATCTCCAA-CTGCTA-A--A--TTTAGCG-TTG---G---G-TGCATTTTCAAGCCATT-T--ACTA-GGTTCAGGGG-----TGTTT-CCA--TGG--AAACGA-ATTCAAC-TAA--A-----TAT-T--AATTTGGTCATATT---------------------TCAAACAG--GCG-GTCCT-TTTTTCCATG-AAA--AAT-AG-ATTTT--AGG--AAATCT-----TGT-TA--TT--TCATCTCAG
gi|4 : aATTTACG-TC-AGAT---AC-CGTT-TTCAGG--GG--AAA-ACAGAGGAAATTCGG-CTAGAGTGCT-TACA--ATTG---TTTTTGT-TT-ATCT-GGAAAA-AAA-AAT-AATTGGCATAT--CAA-T----TGCTTC-T-AACGAAAATAT-T--AAA-GTATTCGATAT--CGT--AACA---TTT--AAC----CTTTGCCTAAATTT-CTT--TG--TGGGGAAATAGGC-T-G-A-TCTGTTAGTAG-TAG-TT-A-GATG-TGAAATTTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCTA-CATATCTTTTAT-ATCG-AA--TCC--C---TAAAC-ATA--CCAA-TATTTTTTGT---TG-G--C-AGATA--GCTATA----A-T-ACCATCT-TT--AA--CGCA-TAGT-AA-AA-A--A-A-AT---A-AA-ATAC-TTG-T-ACA-TTGA-G-TA-T-ATAT--T-T----------TTGAC-CA--TTTTCCTT-GAA-AAC-TCT-ATT-CTC--A-A-T-GA--CAC--TTTTTA--GAAGG-TAC---TGAGGAAA-TT----C-----GG--A-T--TAAAT----TT-TTG----GGT-AA-TTTGTC-TTGGAGTT-ACA-T-GAAAA-ATA-TT-T----C-A-C--A-TCAT------------AATGTTCTGCTCA-TA-ACTA-C--TTGT-ATG-ATGGCCAT--TA-GATATATTCA-----GA--TTAT-ACCCAAT-TGTTTG-TTGTA-CGTATC-TTTGG-ATCTCCAA-CTGCT--A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--GCTA-GGTTCA-GGG-T---TGTTT-CCA--TGG--AAACGA-ATTC-A--TAAC-ATAAATTATATAAAATTT-GTCATTTT---------------------TCAAACAA--GCGAGACCT-CTTTTCCATGAAAA--AAT-AGAATTTT--AGGAAAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|5 : aATTTATGTTC-AGATT--AC-CGTT-GTC-GG--GG--AAA-ACAGAGGAAATTCGGGCTAGAGTGCT-TACA--ATTG---TGTTTTG-TT-ATCT-GGAAAA-AAT-AAT-AATTTGCATAT--CAA-TGCATTGCTTA-T-AATAAAA-TAT----AAA-GTATT-AATGT--CTT--AACA---TTT--AAC----CTTTCGCT---TTT-TTT--TG--GTGGGAAATAGGCAT-G-A-TCTGTTAGTAG-TAG-TTTA-GATG-TAGA--TTTTG-AATGAT-CT-CAAATTA-ACTTTC-G-TCGATTATATCTTTT-T-ATCG-AA-CTCA--C---T-AAC-ATA--CCAA-TATTTTT-GT---TA-GTTC-AG-TA--GCTATAG---A-T-ACCATCT-TT--AA--C-CA-TAGT-AA-AT-A--A-A--T---A-AA-AT-C-TTGTT-ACA-ATGA-G-TA-T-ACAT--T-T----------TTGAC-CA--TTTTCCTTTGAA-AAC-TCTAATC-CTC-AA-A-T-GAC-CAT--TTTTTA--GA--G-TAC---TGAGGAAA-TT----C-----GG--ACT--TAAA-----TT-TTG----GGT-TA-ATTGTC-TTGGAGTT-ACA-T-GAAAA-ATATTT-T----C-A-C--A-TCAT------------AATG-T-TGCACA-TATACTA-C--TTGT-ATG-ATG-CCAT--TA-GAAATATTCA-----AA--TTAT-ACTCAATTTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TTG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGAGG-T---TGTTT-CCAGGTGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATATT---------------------TCAAACAG--GCGAGACCT-CTTTTCCATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTTA
gi|6 : TTCATGCTC-AGATTGTAT-TGTC-TGT-GATAGG--AAACACAGAGGAAATTCAGGCT-GAGTGCT-TACACAATTG---TTTTT-G-TT-ATCT-GGAAAATAAT-AA---ATTTGCAT-T--CAA-T--A--GCT-C-T-A-TGAAA-TAC-CG-AAA-GTATT-GATAC--TTTCTAACA---TTT--AAC----TTT-ACCT---TTT-CTT------GTGGGAAATAGACATTG-A-TCT-TT-GTAG-TAG-TTTA-GATGGTGAAATTTTCG-AATGATTCT-CAAATTA-ACTT---G-CCGATTATATTTTTT-T-ATCG-AA--TAA--C---T-AAC-ATA--CCAACTATTTTTTATATATAAGTTCGAG-TA--GCTATAAGATA-T-ACCATCTGTT--AAC-T-CA-TAGT-AA-AATA--A-A-AT---T-AA-AT-C-TTGTT-ACA-ATGAAG-TA-T-ATAT--T-T----------TTGAC-CA--TTTTC--TTGCA-AAC-TTCTATC-CTC-AA-AAT-GCA-CAT--TTTT-A--GA--GGTAC---TGAGGAAA-TA----A-----GG--A-T--TAAAA----TT-TTG----GATCAA-TTTGTC-TTGGAGTT-ACA-T-GAAAA-ACATTT-T----C-A-C--ACCCAT------------AATG-TCTGCAC
gi|7 : atTATCTTTT-T-ACTG-AA-ATCA--TGTGC-AAC------CCAA-TAAAGTGGGT---TA-TTTC-CT-CA--GCAGTGG---A-T-ACTATCT-TTC-AA--T-CA-CGGT-GA-A--A--A-A-AT---T-AA-AT-C-TT---------TAA-G-TA-TCATAT--T-CAGAAAAAGTATCCAC-CA---TCTCCTTTGAG-AA---GTAATTGCTCAAA-A-T-GTA-CAT--T-----------A-TAC---TGGAGGAA-TT----CTGGGGGG--G-G--GGAG-----GG-GGG----GGT-GA-TTTA---CTGG---T-GC--------A-ATACTTAT----C-A-C----TCATTCGAACAAACATAGTG-TCCACAAA-TAGACTGTT--TTGT-ATG-ATAATCAT--TA--ATCTAGTCA-----CA--TTA-----CAACCTGTGTG-T------ATA------GG-ATCCACAA-CTGTTC-AT-A-TTTT--C--------------TCCA---TCAA--CA-T-T--GTTC-AGTTCAGAGG-T---TGTTT-ACA--AGG--CAACGA-ACTT-AC-AAAT-G-----TA
gi|8 : AGTTG-ATGTTCAG-TCGATCATAC--TTT-T-ATTG-AA-GTCA--C---T-GAC-ATA--CCCA-TATTTTTTGT---TACATTT--G-TA--CCTATGA---A-T-ACCTTCT-TT--AA--------AATGAA-AT-A--A-A-ATTTTA-AATAT-C-TAATT-ACG-TTCA-A-TA-TCAT-T--T-T----------CCAAC-AA--TTTTTCTTGAAA-AATATGTGATA-A---AA-A-T--AC-CAT--TTTTCAAAGA--G--AC---TGAGGAAA-TT----C-----GG--A-C----AATTTTTTT-TTT----CGT-TA-TTTCCT-TTGGCATT-ACATT-CAAAA-ACACTT-T----T-A-CCTA-TC--------------AGTG-TCCAGACA-TAGACAG-T--TTCA-ATG-ATGACCAT--
gi|9 : atgtgaaaatatgaacaagggc--A-TCAT------------AATG-TCTGCACA-TATACTA-C--TTGT-AAG-ATGGCCAT--TA-AATATATTCA-----AA--TTCT-ACTCAATTTGTTTG-TTGTA-CATATC-TTTGG-ATCTCCAA-CTGCTA-A--A-TTTTAGCG-TCG---G---G-TGCATTTTCAA--CA-T-T--ACTA-GGTTCAGGTG-T---TGTTT-CCA--TGG--AAACGA-ATTC-AC-TAAC-A-----TATGTAAAATTT-GTCATTTT---------------------TCAAACAA--GC--------------CATGAAAA--AAT-AG-ATTTT--AGG-AAAATCT-----TGT-TAC-TT--TCATCTCAGCATCATA-TCCCCTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTAACTAAATATGATTTTCTTCTCTTGAAAAATATGTTATAAAAGTGTCATTTTTCAATGAGACAGAGGAAATTCGG