lowQualScore : 11111111111111 1111111111111 222222222222 11111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111
lowQualScore : 55555555555555 1 0000000000000 4444444444 4 55 000000000000 1 22 44444444444444444444444444444 1 222222 1111 1 11 1 1 1 444444 11 1 1 1 111 222 33333333333 11 11111111 11 1111 111111 11 333333333333333333333333333333333333333333333333333333333333333333333333333333 5555555555 000000000000000000000 22222222
lowQualScore : 44444444444444 6 4 66 5 2222222222222 4 2222222222 0 6 6 55 6 555555555555 5 6 6 6 33 22222222222222222222222222222 5 444 555555 9999 5 33 0 0 0 6 6 333333 6 8 11 0 0 3 8 6 0 0 3 0 888 000 6 8 8 22222222222 3 33 0 8 88888888 22 5 1 2222 999999 55 3 3 777777777777777777777777777777777777777777777777777777777777777777777777777777 0000000000 222222222222222222222 0 0 8 1 55555555 6
lowQualScore : .............. . . .. . ............. . .......... . . . .. . ............ . . . . .. ............................. . ... ...... .... . .. . . . . . ...... . . .. . . . . . . . . . ... ... . . . ........... . .. . . ........ .. . . .... ...... .. . . .............................................................................. .......... ..................... . . . . ........ .
lowQualScore : 00000000000000 0 0 55 0 0000000000000 0 0000000000 0 0 0 00 0 000000000000 0 0 0 0 00 00000000000000000000000000000 5 555 666666 8888 0 88 0 0 0 0 7 777777 7 0 00 8 8 2 8 0 0 0 2 8 888 000 0 0 0 33333333333 5 88 8 0 00000000 77 7 7 1111 666666 00 3 5 555555555555555555555555555555555555555555555555555555555555555555555555555555 3333333333 555555555555555555555 8 8 0 8 88888888 0
consensus : NNNCGTAACTACATAGTGGCAATTGACGCAAATGCCTCANGCCNNATTTGTCAAAAAACAAATTAATT-AAGAAAATNAGGTTTATCAAAAATAAATAATATAAAATATTATGCGCTAAACATTTATATTTACTTT------------AATGTGTAGTTCGTTTGAAGTGTGTTACTAGGAGCCCCTGTCATGTGGCTTTCAATCACTTATAAAAGAAAGAAATGCCACTCNTTCCTTGGTACTTATTNCGTAT-A----TTTCT--TTTGCTGATGA--ATGA-ATG-CCACACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTT-TG-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAGTAAGACTAA-TT-GTGAATCA-TTTTA-T-GTAGCTT-TTCAAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TANACCTGA-TTCAG-TAGAAAAA-CAGAT----AAAAA--A---GCTATGCT-GTAAACGAGGAAAAAGACGCCAGGANGCCGNNAGNATGANNNNTNCNNNACCAANGCGNNCNNAGNNCCGNNNNNGNNNNTTCGGCCGCCCCCAGACCCCTCGCC---AT-ATTTTTCGCCTCGCTTC--------GCTCGGCG-CC-TATATTTTTGCCT-CACAAAAATATCACCC----TAGTTACGGCCATG
Reference ( gi|1 ) : TGCCGTAACTACA-------AATCG--GCAAATGTCTCATGCCGAATTTGTCAAAAAA---ATTAATTTAAAAAAATAAAGTTTATCAAAAATAAA-AATATAAAATATTGTGCGCTAAATA--TATATTCACTTTGATGTCACGGTAAATGTGTAGTTCTTTTGAAGCGTGTCACTAGGAGTCCCTAACATGTGGCTTTCAATCATTTATA----AA-------------TTTCCTTGGTACTTATTTCGTAT-A----TTTGT--TTTCCTGATGA--ATGA-ATG-CCACACAGTGGTGACGGCTAG-ATCTACTTCTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CACTTCG--TATTGTTTCTTTACATAGCAGATAAAAATAAAACTAA-TT-GTGAATCAGTTTTA-C-GTAGTTT-TTCAAGTGCGTGT-TTTGTTCCCA-------TGCTCTAGTTTACAT--GTATTCTGAAATACATTCT-TACACTTTA-TTCAG-CAGAAAAA-CAGAT----AAAAA--A---GCTATGCA-GCAAATGAGGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACCCCTCGCCCAAAT-ATTTTTCGCCTCGCTTC--------GCTAGACGATTATATATTTTTGCCT-CATAAAAATATCTTCC----TAGTTGCGGCCATG
gi|4 : CGTAACTACATAGTGGCAATTGACGCAAATGCCTCATGCCCTATTTGT-AAAA-------------AAGAAAATTAAG----------ATAAATAATATAAAATATTATGCGCTAAACATTTATATTTACTTT------------AATGTGTAGTTCGTTTGAAGTGTGTTACTAGGAGCCCCTGTCATGTGGCTTTCAATTATTTATAAAAGAA-------------GTTCC-----ACTT-TTACTTAT-AAAATTTTCT--TTTGCTGATGA--ATGA-ATG-CTACACAGTGGTGACAGCTAG-ATCTACTGTTCCGTGTT-TATT-TTTGAAATGTTTTTAGCTCGTT-TAAT
gi|14 : ATGCCTTAAGCCGAATTTGTCAAAAAACAAATTAATT-AAAAAAATAAGGTTTATCAAAA
gi|9 : GCTTTCAATCACTTATA----AAAGAAATGCCACTCTTTTTTTGGTACTTATTTTGTATCA----TTTTTCTTTTGCTGATAA--ATGA-ATG-CCACACAGTGGTGACGGCTAG-
gi|2 : TAT-A----TTTCT--TTTGCTGATGATTATGATATGTCCACACGGTGGTGATGGCTAATATCTACTTTT---------------------GTTGCTAACTCATTGTAATCAACACTCGA--TAT-GTTTCTT-ACATAG---ATAAAAGTAAGACTAATTT-GTGAATCA--TTTATT-GTAGCTTAATCAGGT---TGTATGTGTTCCC----------------------T--GTATTCTTAAATACATTCTGTAAACCTGATTTCAGTTAGAAAAA-CAGAT----AAAAA-----------GCA-GTAAACGAGGCAAAAA---------TGCCAGGAACATGATTTCTGCACGATTAAGGCATACTTAGAGCTTTCTTAGCCCTTTCGGCCGCCCCCAGACCCCT-G-CCACAC-ATGTTTCCCCTCGCTTT--------GCCTG-TG-TCTTATA-TTTTGCCTCCATAAAAA
gi|7 : tttgta----TTTCT--TTTGCTGATGA--ATGA-ATG-CCATACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTG-TCTTTAAGATGTTGCTAACTCATT-TAATCA-CACTTCGTATATTGTTTCTTTACAT---AGATAAAAGAAAGACTAA-TT-GTGAATCAGTCTTA-T-GTAGCTT-TTCAAGTGTGTGG-TTCGTTCCCA-------T
gi|6 : tttgatAAGATTTTGCTAACTCATT-TAATCA-TGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGGCTAA-TT-GTGAACCACTTTTA-T-GTAGCTT-TTTAAGTGCGAGT-TTTGTTTTCG-------TGTTCAAGTTTACAT--GTATTCTGAAA--------------CTGA-TTCAG-TTGAAAAA-TAGTT----AAAAACTATATGCTATAAACGCGAATAAGGA
gi|15 : gcaAAGATGTCGCTAACTCATT-TAATCA-TGCTTCG--TATTGTt
gi|3 : cgcctttaggaCATT-TAATCA-TACATCG--TATTGCTTCTTCACACAGCAGATAAAAATAAGACTAA-TTTATG--------TTA-CAGTAGCTT-TTCTAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TATACCTGA-TTCAG-TAGAAAAA-CAGAT----AAAAA--A---GCTATGCT-GTAAACGAGGAAAAAGA
gi|8 : ctctaataagtggctaaagacggcctc-GTAGCTT-TTCAAGTGCATGT-TTTGTTCCCACTTCCCATGATCTAGTTTACATATGTATTCTGAAATACATTCT-TATACCTGG-TTCAG-TAGAAAAACCAGAT----AAAAA--A---GTTATGtgccaggaaatggctaaaatcaaggatttcgcaccttggagcgtctaaggccttaggtcccatcgccctaaaattgatctcggcgcttacatttttgcctcgtaaaagtatctccctagttacggccat
gi|12 : TATTCTGGAATACATTCT-TAAATCTAA-TTTAG-TAGAAAAA-CAGAT----ACAAA--T---GCTATGCT-GTAAACGAGGGAAAAGAatg
gi|5 : A-TTCAG-TAGAAAAA-CAG------AAAAA--A---CCTATGCT-GTAAACGAGGATAAAGACGCCAGGAAATGGCTAGAATAAGAAATTTCGCACCAATAAGGCCAGAGCTTCGGGGGCGGGGATTCGGCGACCCCCAGACCCCTCACC---ATAATTTTTCGCCTCGCTTC--------GTTCGGTG-CCA-ATATT--------------AATATCACCT----TAGTTACGGCCATGtgccag
gi|13 : cctgGAAAAA-CAGATGAAGAAAAA--A---GCTATGCT-GTAAACGAGGGAAAAa
gi|11 : caatcAGACCCCTCACC--ATT-ATTTTTCGCCTCGCTTCCAGCCTTCGCTCGGC-ACT-TATATTTTTGCCC-CACAAAAATATCACCT----TAGTTACGGCCATGtatgtcaggaaatggctacaaac
gi|3 : TACATTTTTGCCT-CGTAAAAGTATCTCCC----TAGTTACGGCCATt
gi|16 : ctctaataagtggctaaagacggcctccatttaatcatacatcgtattgcttcttcacacagcagataaaaataagactaatttatgttacagtagcttttctagtgcgtgttttgttcccatgttctagtttacatgtattctgaaatacattcttatacctgattcagtagaaaaacagataaaaaagctatgctgtaaacgaggaaaaagatgccaggaaatggctaaaatcaaggatttcgcaccttggagcgtctaaggccttaggtcccatcgccctaaaattgatctcggcgctTATATTTTTGCCT-CACAAAAATATCACCCTATATAGTTACGGCCATG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TGTAAATGAGAAAAAAGATGCCAGAATATGGCAAGAATCAATGATTACGCACCGTTAAGGTCAGAGGTTCTGGAGGCCTTACCCCTCGCCCAAAAATT
Alignments
lowQualScore : 111111111111
lowQualScore : 3333333 11 44444444444 1 11 000000000000 88888888888888888888 11 111 11 11 333333 2 22222222 11 1111 555555555555555555555555555555555555555555555555555555555555555 222222222 22222222 11 1111
lowQualScore : 1111111 88 1 22 6 33333333333 0 1 0 7 5 88 222222222222 2 4 0 55555555555555555555 55 55 000 11 11 8 8 8 2 888888 5 6 0 99 6 0 5 8 4 6 6 6 33333333 4 1 11 6 3 5 5 5 0000 3 1 3 555555555555555555555555555555555555555555555555555555555555555 8 000000000 1 99999999 5 11 1 6 6 2 1 7777
lowQualScore : ....... .. . .. . ........... . . . . . .. ............ . . . .................... .. .. ... .. .. . . . . ...... . . . .. . . . . . . . . ........ . . .. . . . . . .... . . . ............................................................... . ......... . ........ . .. . . . . . ....
lowQualScore : 5555555 00 0 00 7 77777777777 7 0 7 3 5 55 555555555555 5 0 7 77777777777777777777 77 22 222 00 00 0 0 0 5 222222 7 7 7 22 4 8 0 0 0 7 7 7 33333333 0 0 00 7 3 7 0 0 6666 4 4 0 999999999999999999999999999999999999999999999999999999999999999 0 888888888 0 00000000 6 00 4 7 7 2 4 0000
consensus : NNNCGTAACTACATAGTGGCAATCGACGCAAATGCCTCATGCCGAATTTGTCAAAAAA---ATTAATT-AAAAAAATAAAGTTTATCAAAAATAAATAATATAAAATATTGTGCGCTAAACATTTATATTCACTTTGATGTCACGGTAAATGTGTAGTTCNTTTGAAGCGTGTCACTAGGAGCCCCTGNCATGTGGCTTTCAATCATTTATAAA--AAA----T-CCACT-TTTCCTTGGTACTTATTNCGTAT-ATTT--CTTTTGCTGATGA--ATGA-ATG-CCACACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGACTAA-TTGTGAATCAGTTTTAC-GTAGCTT-TTCAAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TANACCTGA-TTCAG-TAGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGATGCCAGGAAATGGCTAGAATNANNGATTNCGCACCAANGCGNNCGGAGNNCCGTCTNAGGNNNTTCGGCCGCCCCCAGACCCC-TCGC--C---AT-ATTTTTCGCCTCGCTTC--------GCTCGGCG--CCTATAT-TTTTGCCT-CATAAAAATATCACCC----TAGTTACGGCCATG
Reference ( family-2391 ) : NNNCGTAACTACATAGTGGCAATTGACGCAAATGCCTCANGCCNNATTTGTCAAAAAACAAATTAATT-AAGAAAATNAGGTTTATCAAAAATAAATAATATAAAATATTATGCGCTAAACATTTATATTTACTTT------------AATGTGTAGTTCGTTTGAAGTGTGTTACTAGGAGCCCCTGTCATGTGGCTTTCAATCACTTATAAAAGAAAGAAATGCCACTCNTTCCTTGGTACTTATTNCGTAT-ATTT--CTTTTGCTGATGA--ATGA-ATG-CCACACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTT-TG-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAGTAAGACTAA-TTGTGAATCA-TTTTAT-GTAGCTT-TTCAAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TANACCTGA-TTCAG-TAGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGACGCCAGGANGCCGNNAGNATGANNNNTNCNNNACCAANGCGNNCNNAGNNCCGNNNNNGNNNNTTCGGCCGCCCCCAGACCCC-TCGC--C---AT-ATTTTTCGCCTCGCTTC--------GCTCGGCG--CCTATAT-TTTTGCCT-CACAAAAATATCACCC----TAGTTACGGCCATG
gi|1 : CGTAACTACA-------AATCG--GCAAATGTCTCATGCCGAATTTGTCAAAAAA---ATTAATTTAAAAAAATAAAGTTTATCAAAAATAAA-AATATAAAATATTGTGCGCTAAATAT--ATATTCACTTTGATGTCACGGTAAATGTGTAGTTCTTTTGAAGCGTGTCACTAGGAGTCCCTAACATGTGGCTTTCAATCATTTATAAA-----------------TTTCCTTGGTACTTATTTCGTAT-ATTT--GTTTTCCTGATGA--ATGA-ATG-CCACACAGTGGTGACGGCTAG-ATCTACTTCTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CACTTCG--TATTGTTTCTTTACATAGCAGATAAAAATAAAACTAA-TTGTGAATCAGTTTTAC-GTAGTTT-TTCAAGTGCGTGT-TTTGTTCCCA-------TGCTCTAGTTTACAT--GTATTCTGAAATACATTCT-TACACTTTA-TTCAG-CAGAAAAA-CAGAT----AAAAAAGCTATGCAGCAAATGAGGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACCCC-TCGC--CCAAAT-ATTTTTCGCCTCGCTTC--------GCTAGACGATTATATAT-TTTTGCCT-CATAAAAATATCTTCC----TAGTTGCGGCCATG
gi|10 : tgcTGTAAATGAGAAAAAAGATGCCAGAATATGGCAAGAATCAATGATTACGCACC
gi|11 : AGACCCC-TCAC--C---ATTATTTTTCGCCTCGCTTCCAGCCTTCGCTCGGCA--CTTATAT-TTTTGCCC-CACAAAAATATCACCT----TAGTTACGGCCATGgttaaggtcagaggttctggaggccttacccctcgcccaaaaatt
gi|12 : TATTCTGGAATACATTCT-TAAATCTAA-TTTAG-TAGAAAAA-CAGAT----ACAAATGCTATGCTGTAAACGAGGGAAAAGATGCCAGt
gi|13 : CAA-TCGAAAAA-CAGATGAAGAAAAAAGCTATGCTGTAAACGAGGGAAAATATGTCAGGA
gi|14 : ATGCCTTAAGCCGAATTTGTCAAAAAACAAATTAATT-AAAAAAATAAGGTTTATCAAAAaatggctacaaac
gi|15 : AAGATGTCGCTAACTCATT-TAATCA-TGCTTCG--TATTGT
gi|16 : cgcctttaggaTATAT-TTTTGCCT-CACAAAAATATCACCCTATATAGTTACGGCCATG
gi|2 : TTGTATAT-ATTT--CTTTTGCTGATGATTATGATATGTCCACACGGTGGTGATGGCTAATATCTACTTTT---------------------GTTGCTAACTCATTGTAATCAACACTCGA--TAT-GTTTCTT-ACATAG---ATAAAAGTAAGACTAATTTGTGAATCA-TTTATT-GTAGCTTAATCAGGT---TGTATGTGTTCCC----------------------T--GTATTCTTAAATACATTCTGTAAACCTGATTTCAGTTAGAAAAA-CAGAT----AAAAA------GCAGTAAACGAGGCAAAA-ATGCCAGGAA--------CATGATTTCTGCACGATTAAGGCATACTTAGAGCTTTCTTAGCCCTTTCGGCCGCCCCCAGACCCC-T-GCCAC---AC-ATGTTTCCCCTCGCTTT--------GC-CTGTG--TCT-TATATTTTGCCTCCATAAAAA
gi|3 : tCATT-TAATCA-TACATCG--TATTGCTTCTTCACACAGCAGATAAAAATAAGACTAA-TT------TA-TGTTACAGTAGCTT-TTCTAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TATACCTGA-TTCAG-TAGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGATGCCAGGAAATGGCTAAAATCAAGGATTTCGCACC-------TTGGAG---CGTCTAAGG------------CCTTAGGTCCCATCGC--C---CT-AAAATTGATCTCG-----------------GCG--CTTACAT-TTTTGCCT-CGTAAAAGTATCTCCC----TAGTTACGGCCAT
gi|4 : ctctaataagtggctaaagacggcctcCGTAACTACATAGTGGCAATTGACGCAAATGCCTCATGCCCTATTTGT---AAAA-----------AAGAAAATTAAG----------ATAAATAATATAAAATATTATGCGCTAAACATTTATATTTACTTT------------AATGTGTAGTTCGTTTGAAGTGTGTTACTAGGAGCCCCTGTCATGTGGCTTTCAATTATTTATA----AAAGAAGTTCCACT--TT------TACTTATAAAAT----TTT--CTTTTGCTGATGA--ATGA-ATG-CTACACAGTGGTGACAGCTAG-ATCTACTGTTCCGTGTT-TATT-TTTGAAATGTTTTTAGCTCGTT-TAAT
gi|5 : CCTGA-TTCAG-TAGAAAAA-CAGA------AAAAACCTATGCTGTAAACGAGGATAAAGACGCCAGGAAATGGCTAGAATAAGAAATTTCGCACCAATAAGGCCAGAGCTTCGGGGGCGGGGATTCGGCGACCCCCAGACCCC-TCAC--C---ATAATTTTTCGCCTCGCTTC--------GTTCGGTG--CCAATAT-T--------------AATATCACCT----TAGTTACGGCCATG
gi|6 : AAGATTTTGCTAACTCATT-TAATCA-TGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGGCTAA-TTGTGAACCACTTTTAT-GTAGCTT-TTTAAGTGCGAGT-TTTGTTTTCG-------TGTTCAAGTTTACAT--GTATTCTGAAA--------------CTGA-TTCAG-TTGAAAAA-TAGTT----AAAAACTATATGCTATAAACGCGAATAAGGAa
gi|7 : gcaTTT--CTTTTGCTGATGA--ATGA-ATG-CCATACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTG-TCTTTAAGATGTTGCTAACTCATT-TAATCA-CACTTCGTATATTGTTTCTTTACAT---AGATAAAAGAAAGACTAA-TTGTGAATCAGTCTTAT-GTAGCTT-TTCAAGTGTGTGG-TTCGTTCCCA-------Tt
gi|8 : tttgat-GTAGCTT-TTCAAGTGCATGT-TTTGTTCCCACTTCCCATGATCTAGTTTACATATGTATTCTGAAATACATTCT-TATACCTGG-TTCAG-TAGAAAAACCAGAT----AAAAAAGTTATGATG
gi|9 : GCTTTCAATCACTTATAAAAGAAA----TGCCACTCTTTTTTTGGTACTTATTTTGTATCATTTTTCTTTTGCTGATAA--ATGA-ATG-CCACACAGTGGTGACGGCTAG-
Alignments
lowQualScore : 3333333 11 333333333333333333 1 11 444444444444 7777777777777777 111 111 11 11 222222 1 11 1 22222222 11 1111 11111 77777777777777777777777777777777777777777 33333333 22222222 11 1111
lowQualScore : 1111111 88 000000000000000000 7 5 88 555555555555 1 1 0000000000000000 444 55 000 11 11 8 8 8 2 333333 5 6 0 99 6 0 5 6 0 00 3 6 6 33333333 4 1 11 6 3 5 5 5 0000 3 1 6 0 1 2 44444 1 22222222222222222222222222222222222222222 00 6 99 11111111 0 0 99999999 0 11 1 6 6 1 7777
lowQualScore : ....... .. .................. . . .. ............ . . ................ ... .. ... .. .. . . . . ...... . . . .. . . . . . .. . . . ........ . . .. . . . . . .... . . . . . . ..... . ......................................... .. . .. ........ . . ........ . .. . . . . ....
lowQualScore : 5555555 00 333333333333333333 3 5 55 555555555555 0 0 7777777777777777 777 22 222 00 00 0 0 0 5 555555 7 7 7 22 4 8 0 0 8 66 3 7 7 33333333 0 0 00 7 3 0 0 0 6666 4 4 7 2 0 8 66666 0 88888888888888888888888888888888888888888 88 7 22 55555555 8 8 00000000 8 00 4 7 7 4 0000
consensus : NNNCGTAACTACATAGTGGCAATCGACGCAAATGCCTCATGCCGAATTTGTCAAAAAA---ATTAATT-AAAAAAATAAAGTTTATCAAAAATAAATAATATAAAATATTGTGCGCTAAACATTTATATTCACTTTGATGTCACGGTAAATGTGTAGTTCNTTTGAAGCGTGTCACTAGGAGCCCCTGNCATGTGGCTTTCAATCATTTATAAAA--GA---T-CCACT-TTTCCTTGGTACTTATTNCGTAT-ATTT--CTTTTGCTGATGA--ATGA-ATG-CCACACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGACTAATTTGTGAATCAGTTTTAC-GTAGCTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TANACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGATGCCAGGAA-ATGGCTAGAATCAANGATTNCGCAC---CGATAAGGNCGGAGNTCCGTCTGAGGGCNTTCGGC-GCCCCCAGACCCC-TCGC--C---ATA--ATTTTTCGCCTCGCTTC--------GCTCGGCG--CCTATAT-TTTTGCCT-CATAAAAATATCACCC----TAGTTACGGCCATG
Reference ( family-2391 ) : NNNCGTAACTACATAGTGGCAATCGACGCAAATGCCTCATGCCGAATTTGTCAAAAAA---ATTAATT-AAAAAAATAAAGTTTATCAAAAATAAATAATATAAAATATTGTGCGCTAAACATTTATATTCACTTTGATGTCACGGTAAATGTGTAGTTCNTTTGAAGCGTGTCACTAGGAGCCCCTGNCATGTGGCTTTCAATCATTTATAAAA--AA---T-CCACT-TTTCCTTGGTACTTATTNCGTAT-ATTT--CTTTTGCTGATGA--ATGA-ATG-CCACACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGACTAATT-GTGAATCAGTTTTAC-GTAGCTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TANACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGATGCCAGGAA-ATGGCTAGAATNANNGATTNCGCAC---CAANGCGNNCGGAGNNCCGTCTNAGGNNNTTCGGCCGCCCCCAGACCCC-TCGC--C---AT---ATTTTTCGCCTCGCTTC--------GCTCGGCG--CCTATAT-TTTTGCCT-CATAAAAATATCACCC----TAGTTACGGCCATG
gi|1 : CGTAACTACA-------AATCG--GCAAATGTCTCATGCCGAATTTGTCAAAAAA---ATTAATTTAAAAAAATAAAGTTTATCAAAAATAAA-AATATAAAATATTGTGCGCTAAATAT--ATATTCACTTTGATGTCACGGTAAATGTGTAGTTCTTTTGAAGCGTGTCACTAGGAGTCCCTAACATGTGGCTTTCAATCATTTATAAA----------------TTTCCTTGGTACTTATTTCGTAT-ATTT--GTTTTCCTGATGA--ATGA-ATG-CCACACAGTGGTGACGGCTAG-ATCTACTTCTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CACTTCG--TATTGTTTCTTTACATAGCAGATAAAAATAAAACTAATT-GTGAATCAGTTTTAC-GTAGTTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGCTCTAGTTTACAT--GTATTCTGAAATACATTCT-TACACTTTATT-CAGC-AGAAAAA-CAGAT----AAAAAAGCTATGCAGCAAATGAGGAAAAAAANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACCCC-TCGC--CCAAAT---ATTTTTCGCCTCGCTTC--------GCTAGACGATTATATAT-TTTTGCCT-CATAAAAATATCTTCC----TAGTTGCGGCCATG
gi|10 : tgcTGTAAATGAGAAAAAAGATGCCAGAAT-ATGGCAAGAATCAATGATTACGCAC---CGTTAAGGTCAGAGGT---TCTGGAGGCCTT-------------ACCCC-TCGC--C---
gi|11 : AGACCCC-TCAC--C---ATT--ATTTTTCGCCTCGCTTCCAGCCTTCGCTCGGCA--CTTATAT-TTTTGCCC-CACAAAAATATCACCT----TAGTTACGGCCATGcaaaaatt
gi|12 : TATTCTGGAATACATTCT-TAAATCTAATT-TAGT-AGAAAAA-CAGAT----ACAAATGCTATGCTGTAAACGAGGGAAAAGATGCCAGt
gi|13 : -CAAT-CGAAAAA-CAGATGAAGAAAAAAGCTATGCTGTAAACGAGGGAAAATATGTCAGGAA-ATGGCTACAA
gi|14 : ATGCCTTAAGCCGAATTTGTCAAAAAACAAATTAATT-AAAAAAATAAGGTTTATCAAAAac
gi|15 : AAGATGTCGCTAACTCATT-TAATCA-TGCTTCG--TATTGT
gi|16 : cgcctttaggaTATAT-TTTTGCCT-CACAAAAATATCACCCTATATAGTTACGGCCATG
gi|2 : TTGTATAT-ATTT--CTTTTGCTGATGATTATGATATGTCCACACGGTGGTGATGGCTAATATCTACTTTT---------------------GTTGCTAACTCATTGTAATCAACACTCGA--TAT-GTTTCTT-ACATAG---ATAAAAGTAAGACTAATTTGTGAATCA--TTTATTGTAGCTTAATCAGGT---TGTATGTGTTCCC----------------------T--GTATTCTTAAATACATTCTGTAAACCTGATTTCAGTTAGAAAAA-CAGAT----AAAAA------GCAGTAAACGAGGCAAAA-ATGCCAGGAACATG------AT------TTCTGCACGATTAAGGCATACTTAGAGCTTTCTTAGCCCTTTCGGCCGCCCCCAGACCCC-T-GCCAC---AC---ATGTTTCCCCTCGCTTT--------GC-CTGTG--TCT-TATATTTTGCCTCCATAAAAA
gi|3 : tCATT-TAATCA-TACATCG--TATTGCTTCTTCACACAGCAGATAAAAATAAGACTAATTTATG--------TTACAGTAGCTTT-TCTAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TATACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGATGCCAGGAA-ATGGCTAAAATCAAGGATTTCGCAC---C-------TTGGAG---CGTCTAAGG------------CCTTAGGTCCCATCGC--C---CTAAAATT---------GAT-----------CTCGGCG--CTTACAT-TTTTGCCT-CGTAAAAGTATCTCCC----TAGTTACGGCCAT
gi|4 : ctctaataagtggctaaagacggcctcCGTAACTACATAGTGGCAATTGACGCAAATGCCTCATGCCCTATTTGT-------------------AAAAAAGAAAATT-----AAGATAAATAATATAAAATATTATGCGCTAAACATTTATATTTACTTT------------AATGTGTAGTTCGTTTGAAGTGTGTTACTAGGAGCCCCTGTCATGTGGCTTTCAATTATTTATAAAA--GAAGTT-CCACT-TT-------TACTTATAAAAT----TTT--CTTTTGCTGATGA--ATGA-ATG-CTACACAGTGGTGACAGCTAG-ATCTACTGTTCCGTGTT-TATT-TTTGAAATGTTTTTAGCTCGTT-TAAT
gi|5 : CCTGATT-CAGT-AGAAAAA-CAGA------AAAAACCTATGCTGTAAACGAGGATAAAGACGCCAGGAA-ATGGCTAGAATAAGAAATTTCGCAC---CAATAAGGCCAGAGCTTCGGGGGCGGGGATTCGGCGACCCCCAGACCCC-TCAC--C---ATA--ATTTTTCGCCTCGCTTC--------GTTCGGTG--CCAATAT-T--------------AATATCACCT----TAGTTACGGCCATG
gi|6 : AAGATTTTGCTAACTCATT-TAATCA-TGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGGCTAATT-GTGAACCACTTTTAT-GTAGCTTT-TTAAGTGCGAGT-TTTGTTTTCG-------TGTTCAAGTTTACAT--GTATTCTGAAA--------------CTGATT-CAGT-TGAAAAA-TAGTT----AAAAACTATATGCTATAAACGCGAATAAGGATa
gi|7 : gcaTTT--CTTTTGCTGATGA--ATGA-ATG-CCATACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTG-TCTTTAAGATGTTGCTAACTCATT-TAATCA-CACTTCGTATATTGTTTCTTTACAT---AGATAAAAGAAAGACTAATT-GTGAATCAGTCTTAT-GTAGCTTT-TCAAGTGTGTGG-TTCGTTCCCA-------T
gi|8 : tttgat-GTAGCTTT-TCAAGTGCATGT-TTTGTTCCCACTTCCCATGATCTAGTTTACATATGTATTCTGAAATACATTCT-TATACCTGGTT-CAGT-AGAAAAACCAGAT----AAAAAAGTTATGATG
gi|9 : GCTTTCAATCACTTATAAAAGAAA---TGCCACTCTTTTTTTGGTACTTATTTTGTATCATTTTTCTTTTGCTGATAA--ATGA-ATG-CCACACAGTGGTGACGGCTAG-
Alignments
lowQualScore : 3333333 11 333333333333333333 1 11 444444444444 66666666666666 111 111 11 11 222222 2 11 1 22222222 11 1111 4444444444444444444444444444444444444444444444 1111111 22222222 11 1111
lowQualScore : 1111111 88 000000000000000000 7 5 88 555555555555 1 1 55555555555555 444 55 000 11 11 8 8 8 2 333333 5 6 0 99 6 0 5 0 0 00 3 6 6 33333333 4 1 11 6 3 5 5 5 0000 3 1 5 0 1 2 66 1 8 2222222222222222222222222222222222222222222222 2 5555555 1 0 0 99999999 0 11 1 6 6 1 7777
lowQualScore : ....... .. .................. . . .. ............ . . .............. ... .. ... .. .. . . . . ...... . . . .. . . . . . .. . . . ........ . . .. . . . . . .... . . . . . . .. . . .............................................. . ....... . . . ........ . .. . . . . ....
lowQualScore : 5555555 00 333333333333333333 3 5 55 555555555555 0 0 00000000000000 777 22 222 00 00 0 0 0 5 555555 7 7 7 22 4 8 0 4 8 66 3 7 7 33333333 0 0 00 7 3 0 0 0 6666 4 4 0 8 0 8 88 0 0 4444444444444444444444444444444444444444444444 5 5555555 0 8 8 00000000 8 00 4 7 7 4 0000
consensus : NNNCGTAACTACATAGTGGCAATCGACGCAAATGCCTCATGCCGAATTTGTCAAAAAA---ATTAATT-AAAAAAATAAAGTTTATCAAAAATAAATAATATAAAATATTGTGCGCTAAACATTTATATTCACTTTGATGTCACGGTAAATGTGTAGTTCNTTTGAAGCGTGTCACTAGGAGCCCCTGNCATGTGGCTTTCAATCATTTATAAAAGAAG-T-CCACT-TTTCCTTGGTACTTATTNCGTAT-ATTT--CTTTTGCTGATGA--ATGA-ATG-CCACACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGACTAATTTGTGAATCAGTTTTAC-GTAGCTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TANACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGA-TGCCAGGAAATGGCTAGAATCAANGATTTC-GCACCGAT-AAGGC-----CAGAGCTTCGTCTGAGGGCCTTCGGC-G-CCCCCAGACCCCTCGCC---ATA-ATTTTTCGCCTCGCTTC--------GCTCGGCG--CCTATAT-TTTTGCCT-CATAAAAATATCACCC----TAGTTACGGCCATG
Reference ( family-2391 ) : NNNCGTAACTACATAGTGGCAATCGACGCAAATGCCTCATGCCGAATTTGTCAAAAAA---ATTAATT-AAAAAAATAAAGTTTATCAAAAATAAATAATATAAAATATTGTGCGCTAAACATTTATATTCACTTTGATGTCACGGTAAATGTGTAGTTCNTTTGAAGCGTGTCACTAGGAGCCCCTGNCATGTGGCTTTCAATCATTTATAAAAGA---T-CCACT-TTTCCTTGGTACTTATTNCGTAT-ATTT--CTTTTGCTGATGA--ATGA-ATG-CCACACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGACTAATTTGTGAATCAGTTTTAC-GTAGCTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TANACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGA-TGCCAGGAAATGGCTAGAATCAANGATTNC-GCACCGAT-AAGGN-----CGGAGNTCCGTCTGAGGGCNTTCGGC-G-CCCCCAGACCCCTCGCC---ATA-ATTTTTCGCCTCGCTTC--------GCTCGGCG--CCTATAT-TTTTGCCT-CATAAAAATATCACCC----TAGTTACGGCCATG
gi|1 : CGTAACTACA-------AATCG--GCAAATGTCTCATGCCGAATTTGTCAAAAAA---ATTAATTTAAAAAAATAAAGTTTATCAAAAATAAA-AATATAAAATATTGTGCGCTAAATAT--ATATTCACTTTGATGTCACGGTAAATGTGTAGTTCTTTTGAAGCGTGTCACTAGGAGTCCCTAACATGTGGCTTTCAATCATTTATAAA--------------TTTCCTTGGTACTTATTTCGTAT-ATTT--GTTTTCCTGATGA--ATGA-ATG-CCACACAGTGGTGACGGCTAG-ATCTACTTCTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CACTTCG--TATTGTTTCTTTACATAGCAGATAAAAATAAAACTAA-TTGTGAATCAGTTTTAC-GTAGTTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGCTCTAGTTTACAT--GTATTCTGAAATACATTCT-TACACTTTATT-CAGC-AGAAAAA-CAGAT----AAAAAAGCTATGCAGCAAATGAGGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNN-NNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNN-N-NNNNNAGACCCCTCGCCCAAAT--ATTTTTCGCCTCGCTTC--------GCTAGACGATTATATAT-TTTTGCCT-CATAAAAATATCTTCC----TAGTTGCGGCCATG
gi|10 : tgcTGTAAATGAGAAAAAAGA-TGCCAGAATATGGCAAGAATCAATGATTAC-GCACCGTT-AAGGT-----CAGAGGT---TCTGGAGGCCTT--------------ACCCCTCGCC---
gi|11 : AGACCCCTCACC---ATT-ATTTTTCGCCTCGCTTCCAGCCTTCGCTCGGCA--CTTATAT-TTTTGCCC-CACAAAAATATCACCT----TAGTTACGGCCATGcaaaaatt
gi|12 : TATTCTGGAATACATTCT-TAAATCTAATT-TAGT-AGAAAAA-CAGAT----ACAAATGCTATGCTGTAAACGAGGGAAAAGA-TGCCAGt
gi|13 : -CAAT-CGAAAAA-CAGATGAAGAAAAAAGCTATGCTGTAAACGAGGGAAAATA-TGTCAGGAAATGGCTACAA
gi|14 : ATGCCTTAAGCCGAATTTGTCAAAAAACAAATTAATT-AAAAAAATAAGGTTTATCAAAAac
gi|15 : AAGATGTCGCTAACTCATT-TAATCA-TGCTTCG--TATTGT
gi|16 : cgcctttaggaTATAT-TTTTGCCT-CACAAAAATATCACCCTATATAGTTACGGCCATG
gi|2 : TTGTATAT-ATTT--CTTTTGCTGATGATTATGATATGTCCACACGGTGGTGATGGCTAATATCTACTTTT---------------------GTTGCTAACTCATTGTAATCAACACTCGA--TAT-GTTTCTT-ACATAG---ATAAAAGTAAGACTAATTTGTGAATCA--TTTATTGTAGCTTAATCAGGT---TGTATGTGTTCCC----------------------T--GTATTCTTAAATACATTCTGTAAACCTGATTTCAGTTAGAAAAA-CAGAT----AAAAA------GCAGTAAACGAGGCAAAA-A-TGCCAGGAA-----------CA-TGATTTCTGCAC-GATTAAGGCATACTTAGAGCTT--TCTTAGCCCTTTCGGCCG-CCCCCAGACCCCT-GCC---ACACATGTTTCCCCTCGCTTT--------GC-CTGTG--TCT-TATATTTTGCCTCCATAAAAA
gi|3 : tCATT-TAATCA-TACATCG--TATTGCTTCTTCACACAGCAGATAAAAATAAGACTAATTTATG--------TTACAGTAGCTTT-TCTAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TATACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGA-TGCCAGGAAATGGCTAAAATCAAGGATTTC-GCACC--------T-----TGGAG---CGTCT-AAGGCCTTAGG-----TCCCA------TCGCC---CTA-AAATT-------GAT-----------CTCGGCG--CTTACAT-TTTTGCCT-CGTAAAAGTATCTCCC----TAGTTACGGCCAT
gi|4 : ctctaataagtggctaaagacggcctcCGTAACTACATAGTGGCAATTGACGCAAATGCCTCATGCCCTATTTGT-------------------AAAAAAGAAAATT-----AAGATAAATAATATAAAATATTATGCGCTAAACATTTATATTTACTTT------------AATGTGTAGTTCGTTTGAAGTGTGTTACTAGGAGCCCCTGTCATGTGGCTTTCAATTATTTATAAAAGAAGTT-CCACT-TT-------TACTTATAAAAT----TTT--CTTTTGCTGATGA--ATGA-ATG-CTACACAGTGGTGACAGCTAG-ATCTACTGTTCCGTGTT-TATT-TTTGAAATGTTTTTAGCTCGTT-TAAT
gi|5 : CCTGATT-CAGT-AGAAAAA-CAGA------AAAAACCTATGCTGTAAACGAGGATAAAGA-CGCCAGGAAATGGCTAGAATAAGAAATTTC-GCACCAAT-AAGGC-----CAGAGCTTCGGGGGCGGGGATTCGGC-GACCCCCAGACCCCTCACC---ATA-ATTTTTCGCCTCGCTTC--------GTTCGGTG--CCAATAT-T--------------AATATCACCT----TAGTTACGGCCATG
gi|6 : AAGATTTTGCTAACTCATT-TAATCA-TGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGGCTAA-TTGTGAACCACTTTTAT-GTAGCTTT-TTAAGTGCGAGT-TTTGTTTTCG-------TGTTCAAGTTTACAT--GTATTCTGAAA--------------CTGATT-CAGT-TGAAAAA-TAGTT----AAAAACTATATGCTATAAACGCGAATAAGGA-Ta
gi|7 : gcaTTT--CTTTTGCTGATGA--ATGA-ATG-CCATACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTG-TCTTTAAGATGTTGCTAACTCATT-TAATCA-CACTTCGTATATTGTTTCTTTACAT---AGATAAAAGAAAGACTAA-TTGTGAATCAGTCTTAT-GTAGCTTT-TCAAGTGTGTGG-TTCGTTCCCA-------T
gi|8 : tttgat-GTAGCTTT-TCAAGTGCATGT-TTTGTTCCCACTTCCCATGATCTAGTTTACATATGTATTCTGAAATACATTCT-TATACCTGGTT-CAGT-AGAAAAACCAGAT----AAAAAAGTTATGATG
gi|9 : GCTTTCAATCACTTATAAAAGAAA-TGCCACTCTTTTTTTGGTACTTATTTTGTATCATTTTTCTTTTGCTGATAA--ATGA-ATG-CCACACAGTGGTGACGGCTAG-
Alignments
lowQualScore : 3333333 11 333333333333333333 1 11 444444444444 33333333333333 111 111 11 11 222222 2 11 1 22222222 11 1111 222222222222222 2222222222 222222222 1111111 22222222 11 1111
lowQualScore : 1111111 88 000000000000000000 7 5 88 555555555555 1 1 99999999999999 444 55 000 11 11 8 8 8 2 333333 5 6 0 99 6 0 5 0 0 00 3 6 6 33333333 4 1 11 6 3 5 5 5 0000 3 1 5 0 1 2 66 8 555555555555555 2222222222 0 999999999 2 5555555 1 0 0 99999999 0 11 1 6 6 1 7777
lowQualScore : ....... .. .................. . . .. ............ . . .............. ... .. ... .. .. . . . . ...... . . . .. . . . . . .. . . . ........ . . .. . . . . . .... . . . . . . .. . ............... .......... . ......... . ....... . . . ........ . .. . . . . ....
lowQualScore : 5555555 00 333333333333333333 3 5 55 555555555555 0 0 33333333333333 777 22 222 00 00 0 0 0 5 555555 7 7 7 22 4 8 0 4 8 66 3 7 7 33333333 0 0 00 7 3 0 0 0 6666 4 4 0 8 0 8 88 0 000000000000000 8888888888 4 666666666 5 5555555 0 8 8 00000000 8 00 4 7 7 4 0000
consensus : NNNCGTAACTACATAGTGGCAATCGACGCAAATGCCTCATGCCGAATTTGTCAAAAAA---ATTAATT-AAAAAAATAAAGTTTATCAAAAATAAATAATATAAAATATTGTGCGCTAAACATTTATATTCACTTTGATGTCACGGTAAATGTGTAGTTCNTTTGAAGCGTGTCACTAGGAGCCCCTGNCATGTGGCTTTCAATCATTTATAAAAGAAG-T-CCACT-TTTCCTTGGTACTTATTNCGTAT-ATTT--CTTTTGCTGATGA--ATGA-ATG-CCACACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGACTAATTTGTGAATCAGTTTTAC-GTAGCTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TANACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGA-TGCCAGGAAATGGCTAGAATCAANGATTTC-GCACCGAT-AAGGC-----CAGAGCTTCGTCTGAGGGCCTTCGGC-G-CCCCCAGACCCCTCGCC---ATA-ATTTTTCGCCTCGCTTC--------GCTCGGCG--CCTATAT-TTTTGCCT-CATAAAAATATCACCC----TAGTTACGGCCATG
Reference ( family-2391 ) : NNNCGTAACTACATAGTGGCAATCGACGCAAATGCCTCATGCCGAATTTGTCAAAAAA---ATTAATT-AAAAAAATAAAGTTTATCAAAAATAAATAATATAAAATATTGTGCGCTAAACATTTATATTCACTTTGATGTCACGGTAAATGTGTAGTTCNTTTGAAGCGTGTCACTAGGAGCCCCTGNCATGTGGCTTTCAATCATTTATAAAAGAAG-T-CCACT-TTTCCTTGGTACTTATTNCGTAT-ATTT--CTTTTGCTGATGA--ATGA-ATG-CCACACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGACTAATTTGTGAATCAGTTTTAC-GTAGCTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TANACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGA-TGCCAGGAAATGGCTAGAATCAANGATTTC-GCACCGAT-AAGGC-----CAGAGCTTCGTCTGAGGGCCTTCGGC-G-CCCCCAGACCCCTCGCC---ATA-ATTTTTCGCCTCGCTTC--------GCTCGGCG--CCTATAT-TTTTGCCT-CATAAAAATATCACCC----TAGTTACGGCCATG
gi|1 : CGTAACTACA-------AATCG--GCAAATGTCTCATGCCGAATTTGTCAAAAAA---ATTAATTTAAAAAAATAAAGTTTATCAAAAATAAA-AATATAAAATATTGTGCGCTAAATAT--ATATTCACTTTGATGTCACGGTAAATGTGTAGTTCTTTTGAAGCGTGTCACTAGGAGTCCCTAACATGTGGCTTTCAATCATTTATAAA--------------TTTCCTTGGTACTTATTTCGTAT-ATTT--GTTTTCCTGATGA--ATGA-ATG-CCACACAGTGGTGACGGCTAG-ATCTACTTCTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CACTTCG--TATTGTTTCTTTACATAGCAGATAAAAATAAAACTAA-TTGTGAATCAGTTTTAC-GTAGTTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGCTCTAGTTTACAT--GTATTCTGAAATACATTCT-TACACTTTATT-CAGC-AGAAAAA-CAGAT----AAAAAAGCTATGCAGCAAATGAGGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNN-NNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNN-N-NNNNNAGACCCCTCGCCCAAAT--ATTTTTCGCCTCGCTTC--------GCTAGACGATTATATAT-TTTTGCCT-CATAAAAATATCTTCC----TAGTTGCGGCCATG
gi|10 : tgcTGTAAATGAGAAAAAAGA-TGCCAGAATATGGCAAGAATCAATGATTAC-GCACCGTT-AAGGT-----CAGAGGT---TCTGGAGGCCTT--------------ACCCCTCGCC---
gi|11 : AGACCCCTCACC---ATT-ATTTTTCGCCTCGCTTCCAGCCTTCGCTCGGCA--CTTATAT-TTTTGCCC-CACAAAAATATCACCT----TAGTTACGGCCATGcaaaaatt
gi|12 : TATTCTGGAATACATTCT-TAAATCTAATT-TAGT-AGAAAAA-CAGAT----ACAAATGCTATGCTGTAAACGAGGGAAAAGA-TGCCAGt
gi|13 : -CAAT-CGAAAAA-CAGATGAAGAAAAAAGCTATGCTGTAAACGAGGGAAAATA-TGTCAGGAAATGGCTACAA
gi|14 : ATGCCTTAAGCCGAATTTGTCAAAAAACAAATTAATT-AAAAAAATAAGGTTTATCAAAAac
gi|15 : AAGATGTCGCTAACTCATT-TAATCA-TGCTTCG--TATTGT
gi|16 : cgcctttaggaTATAT-TTTTGCCT-CACAAAAATATCACCCTATATAGTTACGGCCATG
gi|2 : TTGTATAT-ATTT--CTTTTGCTGATGATTATGATATGTCCACACGGTGGTGATGGCTAATATCTACTTTT---------------------GTTGCTAACTCATTGTAATCAACACTCGA--TAT-GTTTCTT-ACATAG---ATAAAAGTAAGACTAATTTGTGAATCA--TTTATTGTAGCTTAATCAGGT---TGTATGTGTTCCC----------------------T--GTATTCTTAAATACATTCTGTAAACCTGATTTCAGTTAGAAAAA-CAGAT----AAAAA------GCAGTAAACGAGGCAAAA-A-TGCCAGGAA-----------CA-TGATTTCTGCAC-GATTAAGGCATACTTAGAGCTT--TCTTAGCCCTTTCGGCCG-CCCCCAGACCCCT-GCC---ACACATGTTTCCCCTCGCTTT--------GC-CTGTG--TCT-TATATTTTGCCTCCATAAAAA
gi|3 : tCATT-TAATCA-TACATCG--TATTGCTTCTTCACACAGCAGATAAAAATAAGACTAATTTATG--------TTACAGTAGCTTT-TCTAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TATACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGA-TGCCAGGAAATGGCTAAAATCAAGGATTTC-GCACC--------T-----TGGAG---CGTCT-AAGGCCTTAGG-----TCCCA------TCGCC---CTA-AAATT-------GAT-----------CTCGGCG--CTTACAT-TTTTGCCT-CGTAAAAGTATCTCCC----TAGTTACGGCCAT
gi|4 : ctctaataagtggctaaagacggcctcCGTAACTACATAGTGGCAATTGACGCAAATGCCTCATGCCCTATTTGT-------------------AAAAAAGAAAATT-----AAGATAAATAATATAAAATATTATGCGCTAAACATTTATATTTACTTT------------AATGTGTAGTTCGTTTGAAGTGTGTTACTAGGAGCCCCTGTCATGTGGCTTTCAATTATTTATAAAAGAAGTT-CCACT-TT-------TACTTATAAAAT----TTT--CTTTTGCTGATGA--ATGA-ATG-CTACACAGTGGTGACAGCTAG-ATCTACTGTTCCGTGTT-TATT-TTTGAAATGTTTTTAGCTCGTT-TAAT
gi|5 : CCTGATT-CAGT-AGAAAAA-CAGA------AAAAACCTATGCTGTAAACGAGGATAAAGA-CGCCAGGAAATGGCTAGAATAAGAAATTTC-GCACCAAT-AAGGC-----CAGAGCTTCGGGGGCGGGGATTCGGC-GACCCCCAGACCCCTCACC---ATA-ATTTTTCGCCTCGCTTC--------GTTCGGTG--CCAATAT-T--------------AATATCACCT----TAGTTACGGCCATG
gi|6 : AAGATTTTGCTAACTCATT-TAATCA-TGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGGCTAA-TTGTGAACCACTTTTAT-GTAGCTTT-TTAAGTGCGAGT-TTTGTTTTCG-------TGTTCAAGTTTACAT--GTATTCTGAAA--------------CTGATT-CAGT-TGAAAAA-TAGTT----AAAAACTATATGCTATAAACGCGAATAAGGA-Ta
gi|7 : gcaTTT--CTTTTGCTGATGA--ATGA-ATG-CCATACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTG-TCTTTAAGATGTTGCTAACTCATT-TAATCA-CACTTCGTATATTGTTTCTTTACAT---AGATAAAAGAAAGACTAA-TTGTGAATCAGTCTTAT-GTAGCTTT-TCAAGTGTGTGG-TTCGTTCCCA-------T
gi|8 : tttgat-GTAGCTTT-TCAAGTGCATGT-TTTGTTCCCACTTCCCATGATCTAGTTTACATATGTATTCTGAAATACATTCT-TATACCTGGTT-CAGT-AGAAAAACCAGAT----AAAAAAGTTATGATG
gi|9 : GCTTTCAATCACTTATAAAAGAAA-TGCCACTCTTTTTTTGGTACTTATTTTGTATCATTTTTCTTTTGCTGATAA--ATGA-ATG-CCACACAGTGGTGACGGCTAG-
blockSeqs : TAGTGGC AC CAAAAAACAAATTAATT T T TT . G T AGAAATGCCACTC TTT GT ATC TT TT T T T C GTGTC G A TA C C T CT T A A ACTTCCCA T T AT G A T T C GAAG T G . A G AT T GATTAAGGCATACT CTTCGGGGGC CGGCCGCC G ACAC T CAGCCTTC . T A C A TATA
blockSeqs : . . AGAAGTTCCACT . AA AT . . . . . C TATT . . . C C T GT A . . A T A . . A . . . . A G . T C AG . CGTTAAGGT CTTTCTTA CGGCGACC G ATT G . . C . . A .
blockSeqs : TT . . . . . . . . . . . T . . . . . . G A T . . T . . . . A T . T A GA . CAATAAGGC GTTCTGG AGGT G CTA A . . T . . T .
blockSeqs : . . . . . . . . . . . . . . . A . . . . T . . . . A G . T G T . CT CGTCTA . . ATA T . . C . . A .
blockSeqs : . . . . . . . . . . . . . C G . . . . . .
blockSeqs : . . . . . A G .
blockSeqs : . . . . . . .
blockSeqCons : CTTCTA**** GGC****** ATA**** **
originalCons : NNNCGTAACTACATAGTGGCAATCGACGCAAATGCCTCATGCCGAATTTGTCAAAAAA---ATTAATT-AAAAAAATAAAGTTTATCAAAAATAAATAATATAAAATATTGTGCGCTAAACATTTATATTCACTTTGATGTCACGGTAAATGTGTAGTTCNTTTGAAGCGTGTCACTAGGAGCCCCTGNCATGTGGCTTTCAATCATTTATAAAAGAAG-T-CCACT-TTTCCTTGGTACTTATTNCGTAT-ATTT--CTTTTGCTGATGA--ATGA-ATG-CCACACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGACTAATTTGTGAATCAGTTTTAC-GTAGCTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TANACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGA-TGCCAGGAAATGGCTAGAATCAANGATTTC-GCACCGAT-AAGGC-----CAGAGCTTCGTCTGAGGGCCTTCGGC-G-CCCCCAGACCCCTCGCC---ATA-ATTTTTCGCCTCGCTTC--------GCTCGGCG--CCTATAT-TTTTGCCT-CATAAAAATATCACCC----TAGTTACGGCCATG
finalCons : NNNCGTAACTACATAGTGGCAATCGACGCAAATGCCTCATGCCGAATTTGTCAAAAAA---ATTAATT-AAAAAAATAAAGTTTATCAAAAATAAATAATATAAAATATTGTGCGCTAAACATTTATATTCACTTTGATGTCACGGTAAATGTGTAGTTCNTTTGAAGCGTGTCACTAGGAGCCCCTGNCATGTGGCTTTCAATCATTTATAAAAGAAG-T-CCACT-TTTCCTTGGTACTTATTNCGTAT-ATTT--CTTTTGCTGATGA--ATGA-ATG-CCACACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGACTAATTTGTGAATCAGTTTTAC-GTAGCTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TANACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGA-TGCCAGGAAATGGCTAGAATCAANGATTTC-GCACCGAT-AAGGC-----CAGAGCTTCTA----GGGCCTTGGC------CCCAGACCCCTCGCCATA----ATTTTTCGCCTCGCTTC--------GCTCGGCG--CCTATAT-TTTTGCCT-CATAAAAATATCACCC----TAGTTACGGCCATG
Alignments
lowQualScore : 3333333 11 333333333333333333 1 11 444444444444 33333333333333 111 111 11 11 222222 2 11 1 22222222 11 1111 222222222 222222222222222 111 5555555555555555555555 1111111 22222222 11 1111
lowQualScore : 1111111 88 000000000000000000 7 5 88 555555555555 1 1 99999999999999 444 55 000 11 11 8 8 8 2 333333 5 6 0 99 6 0 5 0 0 00 3 6 6 33333333 4 1 11 6 3 5 5 5 0000 3 1 000000000 0 1 2 66 8 555555555555555 8 000 4444444444444444444444 2 5555555 1 0 0 99999999 0 11 1 6 6 1 7777
lowQualScore : ....... .. .................. . . .. ............ . . .............. ... .. ... .. .. . . . . ...... . . . .. . . . . . .. . . . ........ . . .. . . . . . .... . . ......... . . . .. . ............... . ... ...................... . ....... . . . ........ . .. . . . . ....
lowQualScore : 5555555 00 333333333333333333 3 5 55 555555555555 0 0 33333333333333 777 22 222 00 00 0 0 0 5 555555 7 7 7 22 4 8 0 4 8 66 3 7 7 33333333 0 0 00 7 3 0 0 0 6666 4 4 000000000 8 0 8 88 0 000000000000000 0 888 4444444444444444444444 5 5555555 0 8 8 00000000 8 00 4 7 7 4 0000
consensus : NNNCGTAACTACATAGTGGCAATCGACGCAAATGCCTCATGCCGAATTTGTCAAAAAA---ATTAATT-AAAAAAATAAAGTTTATCAAAAATAAATAATATAAAATATTGTGCGCTAAACATTTATATTCACTTTGATGTCACGGTAAATGTGTAGTTCNTTTGAAGCGTGTCACTAGGAGCCCCTGNCATGTGGCTTTCAATCATTTATAAAAGAAG-T-CCACT-TTTCCTTGGTACTTATTNCGTAT-ATTT--CTTTTGCTGATGA--ATGA-ATG-CCACACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGACTAATTTGTGAATCAGTTTTAC-GTAGCTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TANACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGA---------TGCCAGGAAATGGCTAGAATCAANGATTTC-GCACCGAT-AAGGC-----CAGAGCTT-CTGG-GGC-----CTT--GG----CC----CCAGACCCCTCGCC---ATA-ATTTTTCGCCTCGCTTC--------GCTCGGCG--CCTATAT-TTTTGCCT-CATAAAAATATCACCC----TAGTTACGGCCATG
Reference ( family-2391 ) : NNNCGTAACTACATAGTGGCAATCGACGCAAATGCCTCATGCCGAATTTGTCAAAAAA---ATTAATT-AAAAAAATAAAGTTTATCAAAAATAAATAATATAAAATATTGTGCGCTAAACATTTATATTCACTTTGATGTCACGGTAAATGTGTAGTTCNTTTGAAGCGTGTCACTAGGAGCCCCTGNCATGTGGCTTTCAATCATTTATAAAAGAAG-T-CCACT-TTTCCTTGGTACTTATTNCGTAT-ATTT--CTTTTGCTGATGA--ATGA-ATG-CCACACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGACTAATTTGTGAATCAGTTTTAC-GTAGCTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TANACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGA---------TGCCAGGAAATGGCTAGAATCAANGATTTC-GCACCGAT-AAGGC-----CAGAGCTT-CTAG-GGC-----CTT--GG----CC----CCAGACCCCTCGCC---ATA-ATTTTTCGCCTCGCTTC--------GCTCGGCG--CCTATAT-TTTTGCCT-CATAAAAATATCACCC----TAGTTACGGCCATG
gi|1 : CGTAACTACA-------AATCG--GCAAATGTCTCATGCCGAATTTGTCAAAAAA---ATTAATTTAAAAAAATAAAGTTTATCAAAAATAAA-AATATAAAATATTGTGCGCTAAATAT--ATATTCACTTTGATGTCACGGTAAATGTGTAGTTCTTTTGAAGCGTGTCACTAGGAGTCCCTAACATGTGGCTTTCAATCATTTATAAA--------------TTTCCTTGGTACTTATTTCGTAT-ATTT--GTTTTCCTGATGA--ATGA-ATG-CCACACAGTGGTGACGGCTAG-ATCTACTTCTCCGTGTTGTA-T-TTTAAGATGTTGCTAACTCATT-TAATCA-CACTTCG--TATTGTTTCTTTACATAGCAGATAAAAATAAAACTAA-TTGTGAATCAGTTTTAC-GTAGTTTT-TCAAGTGCGTGT-TTTGTTCCCA-------TGCTCTAGTTTACAT--GTATTCTGAAATACATTCT-TACACTTTATT-CAGC-AGAAAAA-CAGAT----AAAAAAGCTATGCAGCAAATGAGGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNN-NNNNN-----NNNNNNNN-NNNN-NNN-----NNN--NN----NN----NNAGACCCCTCGCCCAAAT--ATTTTTCGCCTCGCTTC--------GCTAGACGATTATATAT-TTTTGCCT-CATAAAAATATCTTCC----TAGTTGCGGCCATG
gi|10 : tgcTGTAAATGAGAAAAAAGA---------TGCCAGAATATGGCAAGAATCAATGATTAC-GCACCGTT-AAGGT-----CAGAGGTT-CTGGAGGC-----CTT------------------ACCCCTCGCC---
gi|11 : AGACCCCTCACC---ATT-ATTTTTCGCCTCGCTTCCAGCCTTCGCTCGGCA--CTTATAT-TTTTGCCC-CACAAAAATATCACCT----TAGTTACGGCCATGcaaaaatt
gi|12 : TATTCTGGAATACATTCT-TAAATCTAATT-TAGT-AGAAAAA-CAGAT----ACAAATGCTATGCTGTAAACGAGGGAAAAGA---------TGCCAGt
gi|13 : -CAAT-CGAAAAA-CAGATGAAGAAAAAAGCTATGCTGTAAACGAGGGAAAATA---------TGTCAGGAAATGGCTACAA
gi|14 : ATGCCTTAAGCCGAATTTGTCAAAAAACAAATTAATT-AAAAAAATAAGGTTTATCAAAAac
gi|15 : AAGATGTCGCTAACTCATT-TAATCA-TGCTTCG--TATTGT
gi|16 : cgcctttaggaTATAT-TTTTGCCT-CACAAAAATATCACCCTATATAGTTACGGCCATG
gi|2 : TTGTATAT-ATTT--CTTTTGCTGATGATTATGATATGTCCACACGGTGGTGATGGCTAATATCTACTTTT---------------------GTTGCTAACTCATTGTAATCAACACTCGA--TAT-GTTTCTT-ACATAG---ATAAAAGTAAGACTAATTTGTGAATCA--TTTATTGTAGCTTAATCAGGT---TGTATGTGTTCCC----------------------T--GTATTCTTAAATACATTCTGTAAACCTGATTTCAGTTAGAAAAA-CAGAT----AAAAA------GCAGTAAACGAGGCAAAA-A---------TGCCAGGAA-----------CA-TGATTTCTGCAC-GATTAAGGCATACTTAGAGCTTTCTTA-GCC-----CTTTCGG----CCGCCCCCAGACCCCT-GCC---ACACATGTTTCCCCTCGCTTT--------GC-CTGTG--TCT-TATATTTTGCCTCCATAAAAA
gi|3 : tCATT-TAATCA-TACATCG--TATTGCTTCTTCACACAGCAGATAAAAATAAGACTAATTTATG--------TTACAGTAGCTTT-TCTAGTGCGTGT-TTTGTTCCCA-------TGTTCTAGTTTACAT--GTATTCTGAAATACATTCT-TATACCTGATT-CAGT-AGAAAAA-CAGAT----AAAAAAGCTATGCTGTAAACGAGGAAAAAGA---------TGCCAGGAAATGGCTAAAATCAAGGATTTC-GCACC--------T-----TGGAGCGT-CTAA-GGC-----CTTA-GG----TC----CCA------TCGCC---CTA-AAATT-------GAT-----------CTCGGCG--CTTACAT-TTTTGCCT-CGTAAAAGTATCTCCC----TAGTTACGGCCAT
gi|4 : ctctaataagtggctaaagacggcctcCGTAACTACATAGTGGCAATTGACGCAAATGCCTCATGCCCTATTTGT-------------------AAAAAAGAAAATT-----AAGATAAATAATATAAAATATTATGCGCTAAACATTTATATTTACTTT------------AATGTGTAGTTCGTTTGAAGTGTGTTACTAGGAGCCCCTGTCATGTGGCTTTCAATTATTTATAAAAGAAGTT-CCACT-TT-------TACTTATAAAAT----TTT--CTTTTGCTGATGA--ATGA-ATG-CTACACAGTGGTGACAGCTAG-ATCTACTGTTCCGTGTT-TATT-TTTGAAATGTTTTTAGCTCGTT-TAAT
gi|5 : CCTGATT-CAGT-AGAAAAA-CAGA------AAAAACCTATGCTGTAAACGAGGATAAAGA---------CGCCAGGAAATGGCTAGAATAAGAAATTTC-GCACCAAT-AAGGC-----CAGAGCTT-CGGG-GGCGGGGATTC--GGCGACCC----CCAGACCCCTCACC---ATA-ATTTTTCGCCTCGCTTC--------GTTCGGTG--CCAATAT-T--------------AATATCACCT----TAGTTACGGCCATG
gi|6 : AAGATTTTGCTAACTCATT-TAATCA-TGCTTCG--TATTGTTTCTTCACATAGCAGATAAAAATAAGGCTAA-TTGTGAACCACTTTTAT-GTAGCTTT-TTAAGTGCGAGT-TTTGTTTTCG-------TGTTCAAGTTTACAT--GTATTCTGAAA--------------CTGATT-CAGT-TGAAAAA-TAGTT----AAAAACTATATGCTATAAACGCGAATAAGGA---------Ta
gi|7 : gcaTTT--CTTTTGCTGATGA--ATGA-ATG-CCATACGGTGGTGACGGCTAG-ATCTACTTTTCCGTGTTGTG-TCTTTAAGATGTTGCTAACTCATT-TAATCA-CACTTCGTATATTGTTTCTTTACAT---AGATAAAAGAAAGACTAA-TTGTGAATCAGTCTTAT-GTAGCTTT-TCAAGTGTGTGG-TTCGTTCCCA-------T
gi|8 : tttgat-GTAGCTTT-TCAAGTGCATGT-TTTGTTCCCACTTCCCATGATCTAGTTTACATATGTATTCTGAAATACATTCT-TATACCTGGTT-CAGT-AGAAAAACCAGAT----AAAAAAGTTATGATG
gi|9 : GCTTTCAATCACTTATAAAAGAAA-TGCCACTCTTTTTTTGGTACTTATTTTGTATCATTTTTCTTTTGCTGATAA--ATGA-ATG-CCACACAGTGGTGACGGCTAG-