lowQualScore : 11111111111111111 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 22222222222222222222 1 1 44444 111 44444444444444444 1111 1111111 11 4444444444444444 11 888888888888888888888888888888888888888888888888888888888 22222 11111111 1 11111 1 555555555555555555555555555555555555555555555555555555555555 11111 33333333333
lowQualScore : 6 444 5555 55555555555555555555 9 1 5 11111 5 000 88888888888888888 0000 4 7777 888 2 5555555 11 7777777777777777 11 66 0 5 5 0 666666666666666666666666666666666666666666666666666666666 77 77777 44444444 5 5 5 5 9 77 33333 5 66 5 5 7 77 4 5 5 5 5 444444444444444444444444444444444444444444444444444444444444 44444 22222222222 4 777 5 77 666 4 4 3 555 999999 2 2 2 4 4 2 2 8888888888 4
lowQualScore : . ... .... .................... . . . ..... . ... ................. .... . .... ... . ....... .. ................ .. .. . . . . ......................................................... .. ..... ........ . . . . . .. ..... . .. . . . .. . . . . . ............................................................ ..... ........... . ... . .. ... . . . ... ...... . . . . . . . .......... .
lowQualScore : 0 000 2222 33333333333333333333 3 4 7 33333 7 000 99999999999999999 6666 4 1111 888 0 0000000 99 2222222222222222 99 99 9 0 0 4 555555555555555555555555555555555555555555555555555555555 99 99999 66666666 7 7 7 7 1 99 77777 0 99 7 7 3 99 0 0 0 7 7 333333333333333333333333333333333333333333333333333333333333 11111 44444444444 0 666 0 99 777 3 4 6 888 666666 2 2 9 2 2 1 1 8888888888 4
consensus : NNNTTTTTT---TCTTACGCG---AAGAA---AT-GT--AT--------GTTCCA-TGT-ACTT--GAAGT-TGTT---ATTT-------------ACATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTT----G--TA-T--GT-CTTTTGAT--AT--GTTCCC-T-CTTCTTTGGAAACTT---T--TGCC-AT-----G----------TAT---AAA------C---TAT-----TA--ATCAGTTTA----ATATATACT----ACA-A-CT-C-AGGA--CTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-A--A---TG-----GTGA---GG-A-TG---TT--TGGGG--------------T----T-TTTTCCC-CG-ACGAAATTCNT-------AAAA-AAAAT--NTTAGGTTC-GGGAAAT--CGGCATCCC-AAAAT-TAGGTAG---GGT------CGGGA-AACCGGAAA-CACA-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
Reference ( gi|3 ) : GCCTTCTTT---TTTTATGCA---AAGAA---AT-GC--AT--------GTTACA-TGT-ACTC--ATAGT-TGTT---ATTTCATGC-ACTTTTAACATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTT----G--TA----GT-CTTTTGAT--AT--GTTCCC-T-CTTCTTTGAAAACTC---T--TGCC-AT-----A----------TAT---AA-------C---TGT-----TA--ATCAGTTTA----ATATATACT----ACA-A-CT-C-ATGA--CTTTT---ATGC-CA--TTTT-CA-CCGGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-A--A---TNC---AGTAA---AG-A-TG---TT--TTGGA--------------T----T-TTTTTCT-TA-ACGAAATTCGT-------GAAA-AAAAT--TTTAGGGTC-AGGAAAT--TGGCATTCC-AAAAT-TAGGTAG---GGT------CAGGA-AACCGGAAA-CACA-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|7 : TTTTTTAAATTTTACGTG---ACGAA----T-GCCTAT--------GTT-CA-TGTTACTT--G-AAT-TGTT---AATTTATGCCACTTCAAACATGTTTTTTTCTT-AAAA---T---AAAAT-AAG---GAGTCCTT----G--TATCTCGT-CATTTGATG-AT--CTTCCC-T-CTTCCTTTGAAACTT---T--TGCC-AT-----GTCTAAACTACTATTA-AA-------C---TAT-----TA--ATCAGTTTA------ATATACT----ACA-ATCT-CAAGGA--ATTTA---ATGC-CA--TTT
gi|2 : gttaggccaacaaatcaatatgttgtgtttcctgtttctatactcaagaaataaatataggtggatacaaggtaagggaatttttttttTTTTT---TCTTATACGTGTAAAAATGTAT-GT--AT--------GCTCCAATGT-ACTT--GAAGT-TGTT---AT----------------CATGTTT----CTG-AGAAACGTTTAAGAATCAAG---GAC-TCTT----ATTTAATT-GT-CTTCTGAT--AT--GTTCCC-T-CTTCTTTGGAAACTT---T--TGCC-ATGGCCCA----------TGTATAAA-------CTAGTAT-----TA--ATCAGTTTA------ATATACT----ACA-A-CT-C-A-G-------------GC-CA--TTTT-TA-CCTGTC--CACTGT-GCAG-GCATGAAGTG-GTAAA-A-----------------------A-TG---TT--TAGAG--------------T----T-TTTTCCC-CA-ACGAAATTCTT-------TTAA-AAAAT--GTTGGGTTC-GGGAAAT--CAGCATCCC-AAAAT-TAGGTAC---GGT------CAGGA-AACCGGAA---ACA-CA-TGT-T---A------TT-TT
gi|4 : ttaggtcagacaataataatatgttgtgttttcctgtttctatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtaTTTTT---TCTTACATG---AAAAA---AT-GT--ATCAGCCTATGTTCCAATG--ACTT--GAAGT-TGTT---ATT--------------A-ATGTTT----CTG-AA----GT---AAAAT-AAA---GA--TCTT----G--TA----TTGCTTTTGAT--AT--GTCCCC-TTCTTCTTTGGAAACTCCTTT--TGCC-AT-----G----------TAT---AAACTA---C---TAT-----TA--ATCAGTTTA----ATATA--CT----ACA-A-CT-C-AAGA--CTT-----ATGT-CAGTTTTC-CA-CCT-TC--AACTGTTGCAG-GCATGAAGTG-GTAAA-A--A---T-------------------G---TT--TGGGG--------------G----T-TTTCCC---A-ACGAAATTCTTTAAAAAAAAAA-AAAAG--CTTCGATTCGAGGAAAT--CAG-ATCCC-AAAAT-TAGGTAG---GGT------CGGGA-AACCGG-AA-CACA-CATTAT-G---A------TT-TTGTTTGGC
gi|5 : TTTTT---TCTTATGCA---AAGAA----T-GT--AT--------GTTCCA-TGT-ACTT--GAAGTATATT---AT----------------CATGTTT----CTG-A----------------------GA--TCTT----G--TA----TTTCTTCTGAC--AT--GT--CC-T-CTTCTTTGAGA-CT----T--TGAC-AT-----ACA--------TAT---AA-------C---TAC-----TATAATCA-TTTA----ATATGTACT----ACATA-CT-C-AGGA--CTTTT---ATGC-CA---TTT-CA-CT-GTC--CACTGT-GCA--GTATGAAGTG-G-AAA-A--A---T
gi|6 : ttgc---TTTTATTTG---AAGAT---AT-GT--AT--------GTTAAA-TTT-ACTT--GAAGT-TGTTGTTATTTAATGC-ACTTTGAACATGTTT----CTG-AACT--GT---A-----------------TT----G--T--------CTTTTGAT--AT--GTTCCC-T-CTTCTTTGAAAAC--------------------A----------AAC---TA-------C---TAT-----TA--ATCAGTTTA----TTATACA------ACA-A-CT-C-AGGA--CTTTT---ATGC-CA--TTTT-CA-CCAGTC--CGCTGT-GCAG-GCGTGAAGTG-GTAAA-A--A---TG-----------------------T--TGGGG--------------G----G-TTTTCCC-TG-ATGAAATTGGT-------AAAA-AAAAAAATTTAGGGTC-GGGAAAT--TGGCATCCC-AAAAT-TAGGTAG---GGT------CGGGA-AAC-----A-CACA-TA-TAT-T---ATGTAGTTC-TTGTTTGGCCgtttcccccccccccccccccccgcaaaatctttaataaaaaaatgttaggtttaggaatcagcatctcaaaattaggtaggttggacaccagaacagccagaaacatacatattattttgtt
gi|10 : TTACGCG---AAGAA---ATAGT--AT--------GTC-CA-TGT-ACTTTGA-AGT-TGTT---AT----------------CATGTAT----CTG-AAAA--G
gi|1 : atgtgtttcctgtttcatactagaaaaaaaatataagtatgtaggtacatgtatagggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncCA-TGT-ACTT--GAAGT-TGT----ATCT----------------TGTAT----TTGCAAAA--GT---AAGAT-TAATAGGA--T--T----G--TATT--GT-CTTTTGATCAATAGGTTCCCCT-CTTCTTTTGAAACTG---TTGTGCC--T-----A----------TGT---AAATACCT-C---TATCCGAATA--ACAAGTTTATTAGATATA-ACTTAACACA-A-CTCC-AAGAATCTTTA---AATT-TA--TTTT-CAGCCTGTCAAC-CTGT-ACAGAGCA-GAAGTGCGTAAACA--A---TGT---TGGGA---GGTA-TA---TTCCCCCGA--------------CCAAAT-TTCTTCT-TAGACCAAAT--GT------------AGTAT--TC---------GGAAATACAAGCAATCCAAAAAT-TAGGTAGCGCGTC------CGGGA-AGCCGAATA-CACA-CA-TATAT---A------TT-TGGTT
gi|15 : taggccaaacaaaataatatgtgtgtttcctgtttcatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcttttttgttaccatgaagaaaggttatctattatgtctccGCTT----TTG-AAAA--GT---AAAAT-AAA---GA--TCTT----A--TATT--GC-CTTCTGAT--AT--GTCCCC-T-ATTCTTTGAAAACTT---T--TGCC-
gi|11 : -AAAA--GT---AAAAT-ATA---GA--TCTTTATTG--T------T-CTTTTGAT------GTTCCC-T-CTT---TGAAATTTTA--T--TGCCTAT-----G----------TAT---AAAACTTACC---TGG-----TG---CCAGTTTA-----TATACA-T----ACA-A-CT-C-AGGA--CTTTTGCTATGCACA--TTTTTCA-CCTGTC--TGTTGT-GCAG-GCATGAAG
gi|13 : tT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-TCATGAAGTT-GTAAA-A--ATGGTGG---GGTGG---GG-G-TG---------GGG--------------T----TGTTGTTGT-TG-TTGAAATTCTT-------GAAACAAAAT--TTTAGGGTC-GGGA
gi|9 : CTGT-GCAG-GCTTCAAGTG-GTCAA-ATTG---TTCTGGGGTAACCGAG-GCTGAGTTT--TTGGGGGGGTTTTGGTTTTT----T-TTTTTCT-CG-ACGAAATTCAC-------AAGA-AAAAT--GTTAGGTTT-GGGAAAT--TGGTATCCC-AAAAT-TAGATAG---CGT------TAGGA-AACTGGAAA-CACA-CA-TAT-T---A------
gi|12 : GTAA---AA-A-TG---TT--TGGGA--------------T----T-TTTTCCCCTG-ACGAAATT--T-------AAAA-AAAAT--GTTAGGTCT-GGGAAAT--CAGCATCCC-AAAAT-TAGGTAG---GGT------CGGGA-AACTGGAAA-CACA-CA-TAT-T---A------TT-TTCTTTGGcagacctgtttactcttacgat
gi|5 : AAA-AAAAT--GTTAGGTTT-AGGAA-T--CAGCATCTC-AAAAT-TAGGTAG---GTTGGACACCAGAACAGCCAGAAA-CATA-CA-TAT-T---A------TT-TTGTTt
gi|8 : ttgcttttttcttatgcaaagaatgtatgttccatgtacttgaagtatattatcatgtttctgagatcttgtatttcttctgacatgtcctcttctttgagactttgacatacatataactactataatcatttaatatgtactacatactcaggacttttatgccatttcactgtccactgtgcagtatgaagtggaaaaatgtttcccccccccccccccccccgcaaaatctttaatAAA-AAAAT--TTTAGGGTC-GGGAAAT--TGGCATCCA-AAAAT-TAGGTAG---GGT------CGGGA-AACCGGAAACCACA-CA-TAT-T---A------TT-TTGTTTGGCCT
gi|14 : ctactttttttttcatgtgagacaagtagtaaaccgtttgtcagaaattttcaattttagccAAA-AAAAC--TTTAGGGTC-GGGAAAT--TGCCATCCA-AAAAT-TAGGTAG---TGT------CGGGA-AACCGGAAA-CACA-CA-TAT-T---G------TT-catcatcattaatagagtatattttgaaggttttatcattctattgtgtcattgt
gi|19 : gaaattttcaattttagccaAAATATAGGGAA---GGT------CGGGT-AACCGGAAC-CATA-CA-TAT-T---T------TTGTTATTTGGCCT
gi|20 : ctaaaaatgcAAT-TAGGTAG---GGT------CGGGA-AACCGGAAA-CAC-----TAT-TTTCA------TT-TTGTTTGta
gi|22 : ---GGT------CGGGT-AACCGGAAA-CACA-CA-TAT-T----------TG-TT-TTTGGCCTA
gi|2 : aGA-AACAGGAAAACACAACA-TAT-T---A------TTATTGTCTGACCTAA
gi|7 : GA-AACAGGAAA-CACAACA-TAT-T---G------AT-TTGTT-GGCCTAAtatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtattttttcttatacgtgtaaaaatgtatgtatgctccaatgtacttgaagttgttatcatgtttctgagaaacgtttaagaatcaaggactcttatttaattgtcttctgatatgttccctcttctttggaaacttttgccatggcccatgtataaactagtattaatcagtttaatatactacaactcaggccatttttacctgtccactgtgcaggcatgaagtggtaaaaatgtttagagttttttccccaacgaaattcttttaaaaaatgttgggttcgggaaatcagcatcccaaaattaggtacggtcaggaaaccggaaacacatgttatttt
gi|1 : gGA-AACAGGAAA-CACA-CA-TAT-T---A------TT-TTGTTTGGCCTAtatactcaagaaataaatataggtggatacaaggtaagggaatttttttttttttttaaattttacgtgacgaatgcctatgttcatgttacttgaattgttaatttatgccacttcaaacatgtttttttcttaaaataaaataaggagtccttgtatctcgtcatttgatgatcttccctcttcctttgaaacttttgccatgtctaaactactattaaactattaatcagtttaatatactacaatctcaaggaatttaatgccattt
gi|21 : GA-AACGGGAAG-CACA-TA-TAT-T---A------TT-TTGTTTGatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcttttttgttaccatgaagaaaggttatctattatgtctcccatgtacttgaagttgtatcttgtatttgcaaaagtaagattaataggattgtattgtcttttgatcaataggttcccctcttcttttgaaactgttgtgcctatgtaaatacctctatccgaataacaagtttattagatataacttaacacaactccaagaatctttaaatttattttcagcctgtcaacctgtacagagcagaagtgcgtaaacaatgttgggaggtatattcccccgaccaaatttcttcttagaccaaatgtagtattcggaaatacaagcaatccaaaaattaggtagcgcgtccgggaagccgaatacacacatatatatttggtt
gi|18 : tGA-AATAGGTAA-CACA-CA-TAT-T---A------TT-TTGTATGGCTTataccagag
gi|17 : A-AGCAGGAAA-CAAA-GA-TAT-T----------TT-TTTTTTGGCCTataccagaaaaaaataggcagagtactagtagg
gi|16 : atctgAAA-CACA-CA-TAT-T---A------TT-TTGTTTGGCCTAAAgcaaggcaaaaaaaaatccagtaggtaggt
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 111 111111111111111111 1111111111 000000000000000000000000000 111111111 1111111 111 222222 11 333333333333333333333333333333333333333333333333333333333333 22222 1111 11 111 999999999999999999999999999999999999999999999999 222222222222 2222222222
lowQualScore : 000 7777 3 5 66 888888888888888888 1111111111 5 5 5 5 888 5 000000000000000000000000000 9999 4 111111111 0000000 111 66 888888 4 00 66 4 4 0 444444444444444444444444444444444444444444444444444444444444 66 66 33333 7 2 0000 5 5 11 0 333 4 66 5 5 66 2 4 4 5 5 0 444444444444444444444444444444444444444444444444 4 222222222222 4 9999 22 0000000000 3 1 3 1 3 4 0 4 3 555 666666 22 2 4 2 2 2 2 8888888888 4
lowQualScore : ... .... . . .. .................. .......... . . . . ... . ........................... .... . ......... ....... ... .. ...... . .. .. . . . ............................................................ .. .. ..... . . .... . . .. . ... . .. . . .. . . . . . . ................................................ . ............ . .... .. .......... . . . . . . . . . ... ...... .. . . . . . . .......... .
lowQualScore : 000 9999 2 0 99 222222222222222222 0000000000 0 0 0 0 888 0 444444444444444444444444444 4444 0 000000000 3333333 333 11 111111 4 66 11 4 4 9 666666666666666666666666666666666666666666666666666666666666 99 99 22222 0 5 6666 0 0 99 1 999 4 11 0 0 99 2 4 4 0 0 4 333333333333333333333333333333333333333333333333 4 888888888888 4 4444 77 1111111111 6 0 6 9 6 0 5 0 3 444 444444 99 2 0 0 0 0 0 0000000000 2
consensus : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CC-A-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTG--TA--T---GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG-------CC-ATG--TA---------TA-AA-----C---TA---T-----TA--AT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AATG-------GT----G-GG-ATG----TTTGGGG-------------T-T-TTTTCCC------------C-GACGAAA----TTCTT-------A--AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
Reference ( family-234 ) : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CC-A-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTG--TA--T---GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG-------CC-ATG--TA---------TA-AA-----C---TA---T-----TA--AT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AATG-------GT----GAGG-ATG----TTTGGGG-------------T-T-TTTTCCC------------C-GACGAAA----TTCNT-------A--AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|1 : ------GA--AACAGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTA
gi|1 : TTTTT---TGTTA--CCATGAAGAAAG-G--TTATCTATTAT--------GT----CTCCC-A-TGT-AC-TTGAAGT-TG-T---A-TCT---------------------------TGTAT----TTGCAAAA--GT---AAGAT-TAATAGGA----TTG--TAT-T---GT-CTTTTGATCAATAGGTTCCCCT-CTTCTTTTGAAACTG--TTG-TG-------CC--TA--TG---------TA-AATACCTC---TA---TCCGAATA--AC--AAGTTTATTAGATATA-ACTTAACACA-A-CTCCAAGAATCTTTAA-AT-T-TA--TTTT-CAGCCTGTCAAC-CTGT-ACAGAGCA-GAAGTGCGTAAACAATG-------TT----G-GG-A-----------GG-------------TAT-ATTCCCC------------C-GACCAAATTTCTTCTT-------A--GAC-CAAATG-TAGTATTCG-GAAATACAAGCAATCCAAAAAT-TAGGTAGCGCGTCCGG------GA--AGCCGAATA-CAC-A-CA-TATAT---A------TT-TGGTTatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcttttttgttaccatgaagaaaggttatctattatgtctcccatgtacttgaagttgtatcttgtatttgcaaaagtaagattaataggattgtattgtcttttgatcaataggttcccctcttcttttgaaactgttgtgcctatgtaaatacctctatccgaataacaagtttattagatataacttaacacaactccaagaatctttaaatttattttcagcctgtcaacctgtacagagcagaagtgcgtaaacaatgttgggaggtatattcccccgaccaaatttcttcttagaccaaatgtagtattcggaaatacaagcaatccaaaaattaggtagcgcgtccgggaagccgaatacacacatatatatttggtt
gi|10 : taggccaaacaaaataatatgtgtgtttcctgtttcatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcCTTA--C-GCGAAGAAATAG--T--------AT--------G-----T--CC-A-TGT-ACTTTGAAGT-TGTT---A-T---------------------------CATGTAT----CTG-AAAA--G
gi|11 : atgtgtttcctgtttcatactagaaaaaaaatataagtatgtaggtacatgtatagggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAAA--GT---AAAAT-ATA---GA--TCTT---TA--TT--GTTCTTTTGAT------GTT-CCCT-CTTT----GAAATT---TTATTG-------CCTATG--TA---------TA-AAAC---T---TA---CC----TG--GTGCCAGTTTA-----TATACA-T----ACA-A-CTC--AGGACTTTTGCTATGCACA--TTTTTCA-CCTGTC--TGTTGT-GCAG-GCATGAAG
gi|12 : t-------GT----AAAA-ATG----TTTGGGA-------------T-T-TTTTCCC------------CTGACGAAA----TT--T-------A--AAA-AAAATGTTAG-GTCTG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------TT-TTCTTTGG
gi|13 : T---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-TCATGAAGTT-GTAAA-AATG-------GT----GGGGTGGG----GGTGGGG-------------T-TGTTGTTGT------------T-GTTGAAA----TTCTT-------G--AAACAAAATTTTAG-GGTCG-GGAt
gi|14 : -------A--AAA-AAAACTTTAG-GGTCG-GGAA-ATTGCC-ATCCAAAAAT-TAGGTAG---TGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---G------TT-
gi|15 : gaaattttcaattttagccGCTT----TTG-AAAA--GT---AAAAT-AAA---GA--TCTTA--TA--TT--GC-CTTCTGAT--AT--GTC-CCCT-ATTCTTTGAAAACT---TT--TG-------CC-
gi|16 : AAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|17 : A--AGCAGGAAA-CAA-A-GA-TAT-T----------TT-TTTTTTGGCCTcatctttagttccacttggataagcatctgtgatgcaca
gi|18 : atctg------GA--AATAGGTAA-CAC-A-CA-TAT-T---A------TT-TTGTATGGCTTgcaaggcaaaaaaaaatccagtaggtaggt
gi|19 : AAATATAGGGAA---GGTCGG------GT--AACCGGAAC-CAT-A-CA-TAT-T---T------TTGTTATTTGGCCTataccagaaaaaaataggcagagtactagtagg
gi|2 : ctaaaaatgc------GA--AACAGGAAAACAC-AACA-TAT-T---A------TTATTGTCTGACCTAAta
gi|2 : TTTTT---TCTTATAC-GTGTAAAAAT-G--T--------AT--------GTATGCT--CCAA-TGT-AC-TTGAAGT-TGTT---A-T---------------------------CATGTTT----CTG-AGAAACGTTTAAGAATCAAG---GAC-TCTTATTTAATT---GT-CTTCTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TGCCATGGCCC-ATG--TA---------TA-AA-----CTAGTA---T-----TA--AT--CAGTTTA------ATATACT----ACA-A-CTC--AG------------GC-CA--TTTT-TA-CCTGTC--CACTGT-GCAG-GCATGAAGTG-GTAAA-A---------------------ATG----TTTAGAG-------------T-T-TTTTCCC------------C-AACGAAA----TTCTT-------T--TAA-AAAATGTTGG-GTTCG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAC---GGTCAG------GA--AACCGGAA---AC-A-CA-TGT-T---A------TT-TTtatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtattttttcttatacgtgtaaaaatgtatgtatgctccaatgtacttgaagttgttatcatgtttctgagaaacgtttaagaatcaaggactcttatttaattgtcttctgatatgttccctcttctttggaaacttttgccatggcccatgtataaactagtattaatcagtttaatatactacaactcaggccatttttacctgtccactgtgcaggcatgaagtggtaaaaatgtttagagttttttccccaacgaaattcttttaaaaaatgttgggttcgggaaatcagcatcccaaaattaggtacggtcaggaaaccggaaacacatgttatttt
gi|20 : ttaggtcagacaataataatatgttgtgttttcctgtttctatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtaAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC------TAT-TTTCA------TT-TTGTTTG
gi|21 : ------GA--AACGGGAAG-CAC-A-TA-TAT-T---A------TT-TTGTTTG
gi|22 : t---GGTCGG------GT--AACCGGAAA-CAC-A-CA-TAT-T----------TG-TT-TTTGGCCTAataccagag
gi|3 : aTTCTTT---TTTTA--T-GCAAAGAAAT-G--C--------AT--------GT----T--AC-A-TGT-AC-TCATAGT-TGTT---A-TTTCATGCACTTTTAA------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTG--TA------GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAACT---CT--TG-------CC-ATA--TA---------T--AA-----C---TG---T-----TA--AT--CAGTTTA----ATATATACT----ACA-A-CTC--ATGACTTTT---ATGC-CA--TTTT-CA-CCGGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AATNCA-----GT----AAAG-ATG----TTTTGGA-------------T-T-TTTTTCT------------T-AACGAAA----TTCGT-------G--AAA-AAAATTTTAG-GGTCA-GGAA-ATTGGC-ATTCCAAAAT-TAGGTAG---GGTCAG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|4 : gccTTTTT---TCTTA--C-ATGAAAAAAT-G--T--------ATCAGCCTATGT----T--CC-AATG--AC-TTGAAGT-TGTT---A-TT-------------A-------------ATGTTT----CTG-AA----GT---AAAAT-AAA---GA--TCTTG--TA--T---TG-CTTTTGAT--AT--GTC-CCCTTCTTCTTTGGAAACTCCTTT--TG-------CC-ATG--TA---------TA-AA-----C---TACTAT-----TA--AT--CAGTTTA----ATATA--CT----ACA-A-CTC--AAGACTT-----ATGT-CAGTTTTC-CA-CCT-TC--AACTGTTGCAG-GCATGAAGTG-GTAAA-AATG-------------------------TTTGGGG-------------G-T-TTT--CC------------C-AACGAAA----TTCTTTAAAAAAA--AAA-AAAAGCTTCG-ATTCGAGGAA-ATCAG--ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGG-AA-CAC-A-CATTAT-G---A------TT-TTGTTTGGC
gi|5 : TTTTT---TCTTA--T-GCAAAGAA-T-G--T--------AT--------GT----T--CC-A-TGT-AC-TTGAAGTATATT---A-T---------------------------CATGTTT----CTG-A----------------------GA--TCTTG--TA--T---TT-CTTCTGAC--AT--GT---CCT-CTTCTTTG-AGACT---TT---G-------AC-ATA--CA---------TATAA-----C---TA---C-----TATAAT--CA-TTTA----ATATGTACT----ACATA-CTC--AGGACTTTT---ATGC-CA---TTT-CA--CTGTC--CACTGT-GCA--GTATGAAGTG-G-AAA-AAT--------------------------------G-------------T-T-TCCCCCCCCCCCCCCCCCCC-G-CAAAA----TCTTT-------AATAAA-AAAATGTTAG-GTTTA-GG-A-ATCAGC-ATCTCAAAAT-TAGGTA----GGTTGGACACCAGAACAGCCAGAAA-CAT-A-CA-TAT-T---A------TT-TTGTT
gi|6 : ttgc---TTTTA--T-TTGAAGATAT-G--T--------AT--------GT----T--AA-A-TTT-AC-TTGAAGT-TGTTGTTA-TTT------------AATGCACTTTGAACATGTTT----CTG-AA---------------------------CTG--TA--TT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAAC-------------------------------------A-AA-----C---TACTAT-----TA--AT--CAGTTTA----TTATACA------ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCAGTC--CGCTGT-GCAG-GCGTGAAGTG-GTAAA-AATG--------------------------TTGGGG-------------G-G-TTTTCCC------------T-GATGAAA----TTGGTAA-----A--AAA-AAAAATTTAG-GGTCG-GGAA-ATTGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AAC-----A-CAC-A-TA-TAT-T---ATGTAGTTC-TTGTTTGGCC
gi|7 : ------GA--AACAGGAAA-CACAA-CA-TAT-T---G------AT-TTG-TTGGCCTAA
gi|7 : gTTTTTTAAATTTTA--C-GTGACGAA-T-GCCT--------AT--------GT----T--C--A-TGTTAC-TTGAA-T-TGTT---AATTT------------ATGCCACTTCAAACATGTTTTTTTCTT-AAAA---T---AAAAT-AAG---GAGTCCTTG--TA--TCTCGT-CATTTGATG-AT--CTT-CCCT-CTTCCTTTGAAACT---TT--TG-------CC-ATGTCTAAACTACTATTA-AA-----C---TA---T-----TA--AT--CAGTTTA------ATATACT----ACA-ATCTCA-AGGAATTTA---ATGC-CA--TTTtatactcaagaaataaatataggtggatacaaggtaagggaatttttttttttttttaaattttacgtgacgaatgcctatgttcatgttacttgaattgttaatttatgccacttcaaacatgtttttttcttaaaataaaataaggagtccttgtatctcgtcatttgatgatcttccctcttcctttgaaacttttgccatgtctaaactactattaaactattaatcagtttaatatactacaatctcaaggaatttaatgccattt
gi|8 : gttaggccaacaaatcaatatgttgtgtttcctgtttctatactcaagaaataaatataggtggatacaaggtaagggaattttttttt--AAA-AAAATTTTAG-GGTCG-GGAA-ATTGGC-ATCCAAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAACCAC-A-CA-TAT-T---A------TT-TTGTTTGGCCT
gi|9 : ctactttttttttcatgtgagacaagtagtaaaccgtttgtcagaaattttcaattttagccCTGT-GCAG-GCTTCAAGTG-GTCAA-ATTGTTCTGGGGTAACCGAGG-CTGAGTTTTTGGGGGGGTTTTGGTTTTT-T-TTTTTCT------------C-GACGAAA----TTCAC-------A--AGA-AAAATGTTAG-GTTTG-GGAA-ATTGGT-ATCCCAAAAT-TAGATAG---CGTTAG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------catcatcattaatagagtatattttgaaggttttatcattctattgtgtcattgt
Alignments
lowQualScore : 111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111111111111111 1111 1 000000000000000000000000000 111111111 1111111 111 22222 11 111 11 4444444444444444444444444444444444444444 11111 11111111 11 111 000000000000000000000000000000000000000000000000000 222222222222 22222222222
lowQualScore : 000 7777 3 5 66 888888888888888888 0000 66 0 5 5 5 888 5 000000000000000000000000000 9999 4 111111111 0000000 111 777 66666 4 00 66 4 4 0 222 00 44 6666666666666666666666666666666666666666 66 66 77777 77777777 5 5 11 0 333 4 66 5 5 66 2 4 4 5 5 555555555555555555555555555555555555555555555555555 4 222222222222 4 8888 44 44444444444 3 1 3 1 3 4 0 4 3 555 666666 22 2 4 2 2 2 2 8888888888 4
lowQualScore : ... .... . . .. .................. .... .. . . . . ... . ........................... .... . ......... ....... ... ... ..... . .. .. . . . ... .. .. ........................................ .. .. ..... ........ . . .. . ... . .. . . .. . . . . . ................................................... . ............ . .... .. ........... . . . . . . . . . ... ...... .. . . . . . . .......... .
lowQualScore : 000 9999 2 0 99 222222222222222222 6666 99 0 0 0 0 888 0 444444444444444444444444444 4444 0 000000000 3333333 333 888 44444 4 66 11 4 4 9 222 66 66 8888888888888888888888888888888888888888 99 99 11111 22222222 0 0 99 1 999 4 11 0 0 99 2 4 4 0 0 555555555555555555555555555555555555555555555555555 4 888888888888 4 5555 99 33333333333 6 0 6 9 6 0 5 0 3 444 444444 99 2 0 0 0 0 0 0000000000 2
consensus : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---A-TT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TGCC-ATG-------TA---------TA-AA-----CTA-TAT-----TA--AT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AATG--TT--GG-GAT--G--------------TTTGGGG-------------T-T-TTTTCC------------CC-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
Reference ( family-234 ) : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---A-T---GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TGCC-ATG-------TA---------TA-AA-----CTA---T-----TA--AT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AATG--GT--GG-GAT--G--------------TTTGGGG-------------T-T-TTTTCC------------CC-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|1 : ------GA--AACAGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTA
gi|1 : TTTTT---TGTTA--CCATGAAGAAAG-G--TTATCTATTAT--------GT----CTCCCA-TGT-AC-TTGAAGT-TG-T---A-TCT---------------------------TGTAT----TTGCAAAA--GT---AAGAT-TAATAGGA----TTGT---ATT---GT-CTTTTGATCAATAGGTTCCCCT-CTTCTTTTGAAACTG--TTG-TGCC--TA-------TG---------TA-AATACCTCTA---TCCGAATA--AC--AAGTTTATTAGATATA-ACTTAACACA-A-CTCCAAGAATCTTTAA-AT-T-TA--TTTT-CAGCCTGTCAAC-CTGT-ACAGAGCA-GAAGTGCGTAAACAATG--TT--GG-GA-----------------------GG-------------TAT-ATTCCC------------CC-GACCAAATTTCTTCTT-------A---GAC-CAAATG-TAGTATTCG-GAAATACAAGCAATCCAAAAAT-TAGGTAGCGCGTCCGG------GA--AGCCGAATA-CAC-A-CA-TATAT---A------TT-TGGTTatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcttttttgttaccatgaagaaaggttatctattatgtctcccatgtacttgaagttgtatcttgtatttgcaaaagtaagattaataggattgtattgtcttttgatcaataggttcccctcttcttttgaaactgttgtgcctatgtaaatacctctatccgaataacaagtttattagatataacttaacacaactccaagaatctttaaatttattttcagcctgtcaacctgtacagagcagaagtgcgtaaacaatgttgggaggtatattcccccgaccaaatttcttcttagaccaaatgtagtattcggaaatacaagcaatccaaaaattaggtagcgcgtccgggaagccgaatacacacatatatatttggtt
gi|10 : taggccaaacaaaataatatgtgtgtttcctgtttcatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcCTTA--C-GCGAAGAAATAG--T--------AT--------G-----T--CCA-TGT-ACTTTGAAGT-TGTT---A-T---------------------------CATGTAT----CTG-AAAA--G
gi|11 : atgtgtttcctgtttcatactagaaaaaaaatataagtatgtaggtacatgtatagggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAAA--GT---AAAAT-ATA---GA--TCTT-T---A-TT--GTTCTTTTGAT------GTT-CCCT-CTTT----GAAATT---TTATTGCCTATG-------TA---------TA-AAAC---TTA---CC----TG--GTGCCAGTTTA-----TATACA-T----ACA-A-CTC--AGGACTTTTGCTATGCACA--TTTTTCA-CCTGTC--TGTTGT-GCAG-GCATGAAG
gi|12 : tAT--G--------------TTTGGGA-------------T-T-TTTTCC------------CCTGACGAAA----TT--T-------A---AAA-AAAATGTTAG-GTCTG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------TT-TTCTTTGG
gi|13 : gtaaaaT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-TCATGAAGTT-GTAAA-AATG--GT--GG-GGTGGG--------------GGTGGGG-------------T-TGTTGTTG------------TT-GTTGAAA----TTCTT-------G---AAACAAAATTTTAG-GGTCG-GGAt
gi|14 : -------A---AAA-AAAACTTTAG-GGTCG-GGAA-ATTGCC-ATCCAAAAAT-TAGGTAG---TGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---G------TT-
gi|15 : gaaattttcaattttagccGCTT----TTG-AAAA--GT---AAAAT-AAA---GA--TCTTAT---A-TT--GC-CTTCTGAT--AT--GTC-CCCT-ATTCTTTGAAAACT---TT--TGCC-
gi|16 : AAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|17 : A--AGCAGGAAA-CAA-A-GA-TAT-T----------TT-TTTTTTGGCCTcatctttagttccacttggataagcatctgtgatgcaca
gi|18 : atctg------GA--AATAGGTAA-CAC-A-CA-TAT-T---A------TT-TTGTATGGCTTgcaaggcaaaaaaaaatccagtaggtaggt
gi|19 : AAATATAGGGAA---GGTCGG------GT--AACCGGAAC-CAT-A-CA-TAT-T---T------TTGTTATTTGGCCTataccagaaaaaaataggcagagtactagtagg
gi|2 : ctaaaaatgc------GA--AACAGGAAAACAC-AACA-TAT-T---A------TTATTGTCTGACCTAAta
gi|2 : TTTTT---TCTTATAC-GTGTAAAAAT-G--T--------AT--------GTATGCT--CCAATGT-AC-TTGAAGT-TGTT---A-T---------------------------CATGTTT----CTG-AGAAACGTTTAAGAATCAAG---GAC-TCTTATTTAA-TT--GT-CTTCTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TGCC-ATGGCCCATGTA---------TA-AA-----CTAGTAT-----TA--AT--CAGTTTA----ATATA--CT----ACA-A-CTC--AGG------------C-CA--TTTT-TA-CCTGTC--CACTGT-GCAG-GCATGAAGTG-GTAAA-AATG-----------------------------TTTAGAG-------------T-T-TTTTCC------------CC-AACGAAA----TTCTT-------T---TAA-AAAATGTTGG-GTTCG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAC---GGTCAG------GA--AACCGGAA---AC-A-CA-TGT-T---A------TT-TTtatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtattttttcttatacgtgtaaaaatgtatgtatgctccaatgtacttgaagttgttatcatgtttctgagaaacgtttaagaatcaaggactcttatttaattgtcttctgatatgttccctcttctttggaaacttttgccatggcccatgtataaactagtattaatcagtttaatatactacaactcaggccatttttacctgtccactgtgcaggcatgaagtggtaaaaatgtttagagttttttccccaacgaaattcttttaaaaaatgttgggttcgggaaatcagcatcccaaaattaggtacggtcaggaaaccggaaacacatgttatttt
gi|20 : ttaggtcagacaataataatatgttgtgttttcctgtttctatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtaAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC------TAT-TTTCA------TT-TTGTTTG
gi|21 : ------GA--AACGGGAAG-CAC-A-TA-TAT-T---A------TT-TTGTTTG
gi|22 : t---GGTCGG------GT--AACCGGAAA-CAC-A-CA-TAT-T----------TG-TT-TTTGGCCTAataccagag
gi|3 : aTTCTTT---TTTTA--T-GCAAAGAAAT-G--C--------AT--------GT----T--ACA-TGT-AC-TCATAGT-TGTT---A-TTTCATGCACTTTTAA------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---A-----GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAACT---CT--TGCC-ATA-------TA---------TA-A------CTG---T-----TA--AT--CAGTTTA----ATATATACT----ACA-A-CTC--ATGACTTTT---ATGC-CA--TTTT-CA-CCGGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AATNCAGT--AAAGAT--G--------------TTTTGGA-------------T-T-TTTTTC------------TT-AACGAAA----TTCGT-------G---AAA-AAAATTTTAG-GGTCA-GGAA-ATTGGC-ATTCCAAAAT-TAGGTAG---GGTCAG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|4 : gccTTTTT---TCTTA--C-ATGAAAAAAT-G--T--------ATCAGCCTATGT----T--CCAATG--AC-TTGAAGT-TGTT---A-TT-------------A-------------ATGTTT----CTG-AA----GT---AAAAT-AAA---GA--TCTTGT---A-T---TG-CTTTTGAT--AT--GTC-CCCTTCTTCTTTGGAAACTCCTTT--TGCC-ATG-------TA---------TA-AA-----CTACTAT-----TA--AT--CAGTTTA----ATATA--CT----ACA-A-CTC--AAGACTT-----ATGT-CAGTTTTC-CA-CCT-TC--AACTGTTGCAG-GCATGAAGTG-GTAAA-AATG-----------------------------TTTGGGG-------------G-T-TTT--C------------CC-AACGAAA----TTCTTTAAAAAAA---AAA-AAAAGCTTCG-ATTCGAGGAA-ATCAG--ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGG-AA-CAC-A-CATTAT-G---A------TT-TTGTTTGGC
gi|5 : TTTTT---TCTTA--T-GCAAAGAA-T-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGTATATT---A-T---------------------------CATGTTT----CTG-A----------------------GA--TCTTGT---A-T---TT-CTTCTGAC--AT--GT---CCT-CTTCTTTG-AGACT---TT---GAC-ATA-------CA---------TATAA-----CTA---C-----TATAAT--CA-TTTA----ATATGTACT----ACATA-CTC--AGGACTTTT---ATGC-CA---TTT-CA--CTGTC--CACTGT-GCA--GTATGAAGTG-G-AAA-AAT------------------------------------G-------------T-T-TCCCCCCCCCCCCCCCCCCC-G-CAAAA----TCTTT-------AAT-AAA-AAAATGTTAG-GTTTA-GG-A-ATCAGC-ATCTCAAAAT-TAGGTA----GGTTGGACACCAGAACAGCCAGAAA-CAT-A-CA-TAT-T---A------TT-TTGTT
gi|6 : ttgc---TTTTA--T-TTGAAGATAT-G--T--------AT--------GT----T--AAA-TTT-AC-TTGAAGT-TGTTGTTA-TTT------------AATGCACTTTGAACATGTTT----CTG-AA---------------------------CTGT---A-TT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAAC-----------------------------------A-AA-----CTACTAT-----TA--AT--CAGTTTA----TTATACA------ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCAGTC--CGCTGT-GCAG-GCGTGAAGTG-GTAAA-AATG--TT--GG-G----------------------GGG------------------TTTTCC------------CT-GATGAAA----TTGGTAA-----A---AAA-AAAAATTTAG-GGTCG-GGAA-ATTGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AAC-----A-CAC-A-TA-TAT-T---ATGTAGTTC-TTGTTTGGCC
gi|7 : ------GA--AACAGGAAA-CACAA-CA-TAT-T---G------AT-TTG-TTGGCCTAA
gi|7 : gTTTTTTAAATTTTA--C-GTGACGAA-T-GCCT--------AT--------GT----T--C-A-TGTTAC-TTGAA-T-TGTT---AATTT------------ATGCCACTTCAAACATGTTTTTTTCTT-AAAA---T---AAAAT-AAG---GAGTCCTTGT---A-TCTCGT-CATTTGATG-AT--CTT-CCCT-CTTCCTTTGAAACT---TT--TGCC-ATGTC-----TAAACTACTATTA-AA-----CTA---T-----TA--AT--CAGTTTA------ATATACT----ACA-ATCTCA-AGGAATTTA---ATGC-CA--TTTtatactcaagaaataaatataggtggatacaaggtaagggaatttttttttttttttaaattttacgtgacgaatgcctatgttcatgttacttgaattgttaatttatgccacttcaaacatgtttttttcttaaaataaaataaggagtccttgtatctcgtcatttgatgatcttccctcttcctttgaaacttttgccatgtctaaactactattaaactattaatcagtttaatatactacaatctcaaggaatttaatgccattt
gi|8 : gttaggccaacaaatcaatatgttgtgtttcctgtttctatactcaagaaataaatataggtggatacaaggtaagggaatttttttttAA----TT-TT-------AGCCAAA-AAAATTTTAG-GGTCG-GGAA-ATTGGC-ATCCAAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAACCAC-A-CA-TAT-T---A------TT-TTGTTTGGCCT
gi|9 : ctactttttttttcatgtgagacaagtagtaaaccgtttgtcagaaattttcCTGT-GCAG-GCTTCAAGTG-GTCAA-ATTG--TTCTGG-GGT--AACCGAGGCTGAGTTTTTGGGGGGGTTTTGGTTTTT-T-TTTTTC------------TC-GACGAAA----TTCAC-------A---AGA-AAAATGTTAG-GTTTG-GGAA-ATTGGT-ATCCCAAAAT-TAGATAG---CGTTAG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------catcatcattaatagagtatattttgaaggttttatcattctattgtgtcattgt
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 111 111111111111111111 1111 1 000000000000000000000000000 111111111 1111111 111 11 1111111 1 4444444444 11111 11111 11111111 11 111 99999999999999999999999999999999999999999999 22222222222
lowQualScore : 000 7777 3 5 66 888888888888888888 0000 66 0 5 5 5 888 5 000000000000000000000000000 9999 4 111111111 0000000 111 777 66 4 00 66 4 4 0 777 66 777 4 6666666 0 5 3333333333 77777 66 77777 77777777 5 5 11 0 333 4 66 5 5 66 2 4 4 5 5 888 66666666666666666666666666666666666666666666 4 4 0 4 66 8888 44 44444444444 3 1 3 1 3 4 0 4 3 555 666666 22 2 4 2 2 2 2 8888888888 4
lowQualScore : ... .... . . .. .................. .... .. . . . . ... . ........................... .... . ......... ....... ... ... .. . .. .. . . . ... .. ... . ....... . . .......... ..... .. ..... ........ . . .. . ... . .. . . .. . . . . . ... ............................................ . . . . .. .... .. ........... . . . . . . . . . ... ...... .. . . . . . . .......... .
lowQualScore : 000 9999 2 0 99 222222222222222222 6666 99 0 0 0 0 888 0 444444444444444444444444444 4444 0 000000000 3333333 333 888 11 4 66 11 4 4 9 888 11 888 4 2222222 0 0 1111111111 55555 99 11111 22222222 0 0 99 1 999 4 11 0 0 99 2 4 4 0 0 888 00000000000000000000000000000000000000000000 4 4 8 4 11 5555 99 33333333333 6 0 6 9 6 0 5 0 3 444 444444 99 2 0 0 0 0 0 0000000000 2
consensus : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA-CTAC--------TAT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT--GGGAT--G--------------T-TGGGG-------------T-T-TTTTCCCC-GACG--AAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
Reference ( family-234 ) : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA-CTA---------TAT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT--GGGAT--G--------------TTTGGGG-------------T-T-TTTTCCCC-GACG--AAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|1 : ------GA--AACAGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTA
gi|1 : TTTTT---TGTTA--CCATGAAGAAAG-G--TTATCTATTAT--------GT----CTCCCA-TGT-AC-TTGAAGT-TG-T---A-TCT---------------------------TGTAT----TTGCAAAA--GT---AAGAT-TAATAGGA----TTGT---ATT--GT-CTTTTGATCAATAGGTTCCCCT-CTTCTTTTGAAACT---GT--TGTGCCT-ATG-------TAAATAC-CTC---------TATCCGAATAAC--AAGTTTATTAGATATA-ACTTAACACA-A-CTCCAAGAATCTTTAA-AT-T-TA--TTTT-CAGCCTGTCAAC-CTGT-ACAGAGCA-GAAGTGCGTAAACAAT---GTT--GGGA-----------------------GG-------------TAT-ATTCCCCC-GACC--AAATTTCTTCTT-------A---GAC-CAAATG-TAGTATTCG-GAAATACAAGCAATCCAAAAAT-TAGGTAGCGCGTCCGG------GA--AGCCGAATA-CAC-A-CA-TATAT---A------TT-TGGTTatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcttttttgttaccatgaagaaaggttatctattatgtctcccatgtacttgaagttgtatcttgtatttgcaaaagtaagattaataggattgtattgtcttttgatcaataggttcccctcttcttttgaaactgttgtgcctatgtaaatacctctatccgaataacaagtttattagatataacttaacacaactccaagaatctttaaatttattttcagcctgtcaacctgtacagagcagaagtgcgtaaacaatgttgggaggtatattcccccgaccaaatttcttcttagaccaaatgtagtattcggaaatacaagcaatccaaaaattaggtagcgcgtccgggaagccgaatacacacatatatatttggtt
gi|10 : taggccaaacaaaataatatgtgtgtttcctgtttcatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcCTTA--C-GCGAAGAAATAG--T--------AT--------G-----T--CCA-TGT-ACTTTGAAGT-TGTT---A-T---------------------------CATGTAT----CTG-AAAA--G
gi|11 : atgtgtttcctgtttcatactagaaaaaaaatataagtatgtaggtacatgtatagggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAAA--GT---AAAAT-ATA---GA--TCTT-T---ATT--GTTCTTTTGAT------GTT-CCCT-CTTT----GAAATT---TTATTG---CCTATG-------TATA-AAACT----------TACC----TGGTGCCAGTTTA-----TATACA-T----ACA-A-CTC--AGGACTTTTGCTATGCACA--TTTTTCA-CCTGTC--TGTTGT-GCAG-GCATGAAG
gi|12 : tAT--G--------------TTTGGGA-------------T-T-TTTTCCCCTGACG--AAA----TT--T-------A---AAA-AAAATGTTAG-GTCTG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------TT-TTCTTTGG
gi|13 : gtaaaaT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-TCATGAAGTT-GTAAA-AAT---GGT--GGGGTGGG--------------GGTGGGG-------------T-TGTTGTTGTT-GTTG--AAA----TTCTT-------G---AAACAAAATTTTAG-GGTCG-GGAt
gi|14 : -------A---AAA-AAAACTTTAG-GGTCG-GGAA-ATTGCC-ATCCAAAAAT-TAGGTAG---TGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---G------TT-
gi|15 : gaaattttcaattttagccGCTT----TTG-AAAA--GT---AAAAT-AAA---GA--TCTTAT---ATT--GC-CTTCTGAT--AT--GTC-CCCT-ATTCTTTGAAAACT---TT--TG---CC-
gi|16 : AAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|17 : A--AGCAGGAAA-CAA-A-GA-TAT-T----------TT-TTTTTTGGCCTcatctttagttccacttggataagcatctgtgatgcaca
gi|18 : atctg------GA--AATAGGTAA-CAC-A-CA-TAT-T---A------TT-TTGTATGGCTTgcaaggcaaaaaaaaatccagtaggtaggt
gi|19 : AAATATAGGGAA---GGTCGG------GT--AACCGGAAC-CAT-A-CA-TAT-T---T------TTGTTATTTGGCCTataccagaaaaaaataggcagagtactagtagg
gi|2 : ctaaaaatgc------GA--AACAGGAAAACAC-AACA-TAT-T---A------TTATTGTCTGACCTAAta
gi|2 : TTTTT---TCTTATAC-GTGTAAAAAT-G--T--------AT--------GTATGCT--CCAATGT-AC-TTGAAGT-TGTT---A-T---------------------------CATGTTT----CTG-AGAAACGTTTAAGAATCAAG---GAC-TCTTATTTAATT--GT-CTTCTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATGGCCCATGTATA-AA-CTAG--------TAT-----TAAT--CAGTTTA----ATATA--CT----ACA-A-CTC--AGG------------C-CA--TTTT-TA-CCTGTC--CACTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT--------------------------TAGAG-------------T-T-TTTTCCCC-AACG--AAA----TTCTT-------T---TAA-AAAATGTTGG-GTTCG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAC---GGTCAG------GA--AACCGGAA---AC-A-CA-TGT-T---A------TT-TTtatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtattttttcttatacgtgtaaaaatgtatgtatgctccaatgtacttgaagttgttatcatgtttctgagaaacgtttaagaatcaaggactcttatttaattgtcttctgatatgttccctcttctttggaaacttttgccatggcccatgtataaactagtattaatcagtttaatatactacaactcaggccatttttacctgtccactgtgcaggcatgaagtggtaaaaatgtttagagttttttccccaacgaaattcttttaaaaaatgttgggttcgggaaatcagcatcccaaaattaggtacggtcaggaaaccggaaacacatgttatttt
gi|20 : ttaggtcagacaataataatatgttgtgttttcctgtttctatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtaAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC------TAT-TTTCA------TT-TTGTTTG
gi|21 : ------GA--AACGGGAAG-CAC-A-TA-TAT-T---A------TT-TTGTTTG
gi|22 : t---GGTCGG------GT--AACCGGAAA-CAC-A-CA-TAT-T----------TG-TT-TTTGGCCTAataccagag
gi|3 : aTTCTTT---TTTTA--T-GCAAAGAAAT-G--C--------AT--------GT----T--ACA-TGT-AC-TCATAGT-TGTT---A-TTTCATGCACTTTTAA------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---A----GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAACT---CT--TG---CC-ATA-------TAT--AA-C-----------TGT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--ATGACTTTT---ATGC-CA--TTTT-CA-CCGGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AATNCAGTA--AAGAT--G--------------TTTTGGA-------------T-T-TTTTTCTT-AACG--AAA----TTCGT-------G---AAA-AAAATTTTAG-GGTCA-GGAA-ATTGGC-ATTCCAAAAT-TAGGTAG---GGTCAG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|4 : gccTTTTT---TCTTA--C-ATGAAAAAAT-G--T--------ATCAGCCTATGT----T--CCAATG--AC-TTGAAGT-TGTT---A-TT-------------A-------------ATGTTT----CTG-AA----GT---AAAAT-AAA---GA--TCTTGT---ATT--G--CTTTTGAT--AT--GTC-CCCTTCTTCTTTGGAAACTCCTTT--TG---CC-ATG-------TATA-AA-CTAC--------TAT-----TAAT--CAGTTTA----ATATA--CT----ACA-A-CTC--AAGACTT-----ATGT-CAGTTTTC-CA-CCT-TC--AACTGTTGCAG-GCATGAAGTG-GTAAA-AAT---GTT------T--G-----------------GGGG-------------T-T-TT---CCC-AACG--AAA----TTCTTTAAAAAAA---AAA-AAAAGCTTCG-ATTCGAGGAA-ATCAG--ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGG-AA-CAC-A-CATTAT-G---A------TT-TTGTTTGGC
gi|5 : TTTTT---TCTTA--T-GCAAAGAA-T-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGTATATT---A-T---------------------------CATGTTT----CTG-A----------------------GA--TCTTGT---ATT---T-CTTCTGAC--AT--GT---CCT-CTTCTTTG-AGACT---TT---G---AC-ATA-------CATATAA-CTAC--------TAT------AAT--CA-TTTA----ATATGTACT----ACATA-CTC--AGGACTTTT---ATGC-CA---TTT-CA--CTGTC--CACTGT-GCA--GTATGAAGTG-G-AAA-AAT---GTT------------------------TCCCCCC-------------C-C-CCCCCCCC-CCCGCAAAA----TCTTT-------AAT-AAA-AAAATGTTAG-GTTTA-GG-A-ATCAGC-ATCTCAAAAT-TAGGTA----GGTTGGACACCAGAACAGCCAGAAA-CAT-A-CA-TAT-T---A------TT-TTGTT
gi|6 : ttgc---TTTTA--T-TTGAAGATAT-G--T--------AT--------GT----T--AAA-TTT-AC-TTGAAGT-TGTTGTTA-TTT------------AATGCACTTTGAACATGTTT----CTG-AA---------------------------CTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAAC-----------------------------A-AA-CTAC--------TAT-----TAAT--CAGTTTA----TTATACA------ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCAGTC--CGCTGT-GCAG-GCGTGAAGTG-GTAAA-AAT---GTT--GGG----------------------GGG------------------TTTTCCCT-GATG--AAA----TTGGTAA-----A---AAA-AAAAATTTAG-GGTCG-GGAA-ATTGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AAC-----A-CAC-A-TA-TAT-T---ATGTAGTTC-TTGTTTGGCC
gi|7 : ------GA--AACAGGAAA-CACAA-CA-TAT-T---G------AT-TTG-TTGGCCTAA
gi|7 : gTTTTTTAAATTTTA--C-GTGACGAA-T-GCCT--------AT--------GT----T--C-A-TGTTAC-TTGAA-T-TGTT---AATTT------------ATGCCACTTCAAACATGTTTTTTTCTT-AAAA---T---AAAAT-AAG---GAGTCCTTGT---ATCTCGT-CATTTGATG-AT--CTT-CCCT-CTTCCTTTGAAACT---TT--TG---CC-ATG-------TCTA-AA-CTACTATTAAACTAT-----TAAT--CAGTTTA------ATATACT----ACA-ATCTCA-AGGAATTTA---ATGC-CA--TTTtatactcaagaaataaatataggtggatacaaggtaagggaatttttttttttttttaaattttacgtgacgaatgcctatgttcatgttacttgaattgttaatttatgccacttcaaacatgtttttttcttaaaataaaataaggagtccttgtatctcgtcatttgatgatcttccctcttcctttgaaacttttgccatgtctaaactactattaaactattaatcagtttaatatactacaatctcaaggaatttaatgccattt
gi|8 : gttaggccaacaaatcaatatgttgtgtttcctgtttctatactcaagaaataaatataggtggatacaaggtaagggaatttttttttAA----TT-TT-------AGCCAAA-AAAATTTTAG-GGTCG-GGAA-ATTGGC-ATCCAAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAACCAC-A-CA-TAT-T---A------TT-TTGTTTGGCCT
gi|9 : ctactttttttttcatgtgagacaagtagtaaaccgtttgtcagaaattttcCTGT-GCAG-GCTTCAAGTG-GTCAA-ATT---GTTCTGGGGT--AACCGAGGCTGAGTTTTTGGGGGGGTTTTGGTTTTT-T-TTTTTCTC-GACG--AAA----TTCAC-------A---AGA-AAAATGTTAG-GTTTG-GGAA-ATTGGT-ATCCCAAAAT-TAGATAG---CGTTAG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------catcatcattaatagagtatattttgaaggttttatcattctattgtgtcattgt
Alignments
lowQualScore : 111111111111111111111111111 111111111111111111111111111111111111111111111
lowQualScore : 111 111111111111111111 1111 1 000000000000000000000000000 111111111 1111111 111 11 1111111 11111111 11111 11111 11111111 11 111 111111111111111111111111111111111111111111111 1111111111 22222222222
lowQualScore : 000 7777 3 5 66 888888888888888888 0000 66 0 5 5 5 888 5 000000000000000000000000000 9999 4 111111111 0000000 111 777 66 4 00 66 4 4 0 777 66 777 4 6666666 55 66 88888888 22222 66 77777 77777777 5 5 11 0 333 4 66 5 5 66 2 4 4 4 4 777 888888888888888888888888888888888888888888888 4 4 0 9999999999 4 8888 44 44444444444 3 1 3 1 3 4 0 4 3 555 666666 22 2 4 2 2 2 2 8888888888 4
lowQualScore : ... .... . . .. .................. .... .. . . . . ... . ........................... .... . ......... ....... ... ... .. . .. .. . . . ... .. ... . ....... .. .. ........ ..... .. ..... ........ . . .. . ... . .. . . .. . . . . . ... ............................................. . . . .......... . .... .. ........... . . . . . . . . . ... ...... .. . . . . . . .......... .
lowQualScore : 000 9999 2 0 99 222222222222222222 6666 99 0 0 0 0 888 0 444444444444444444444444444 4444 0 000000000 3333333 333 888 11 4 66 11 4 4 9 888 11 888 4 2222222 44 99 11111111 55555 99 11111 22222222 0 0 99 1 999 4 11 0 0 99 2 4 4 4 4 888 000000000000000000000000000000000000000000000 4 4 8 4444444444 4 5555 99 33333333333 6 0 6 9 6 0 5 0 3 444 444444 99 2 0 0 0 0 0 0000000000 2
consensus : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT--GGG-T---G----------------TGGGG-------------T-T-TTTTCCC----------C-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
Reference ( family-234 ) : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT--GGGAT---G---------------TTGGGG-------------T-T-TTTTCCC----------C-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|1 : ------GA--AACAGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTA
gi|1 : TTTTT---TGTTA--CCATGAAGAAAG-G--TTATCTATTAT--------GT----CTCCCA-TGT-AC-TTGAAGT-TG-T---A-TCT---------------------------TGTAT----TTGCAAAA--GT---AAGAT-TAATAGGA----TTGT---ATT--GT-CTTTTGATCAATAGGTTCCCCT-CTTCTTTTGAAACT---GT--TGTGCCT-ATG-------TAAA-TA--CC--------TCTATCCGAATAAC--AAGTTTATTAGATATA-ACTTAACACA-A-CTCCAAGAATCTTTAA-AT-T-TA--TTTT-CAGCCTGTCAAC-CTGT-ACAGAGCA-GAAGTGCGTAAACAAT---GTT--GGGA------------------------GG-------------TAT-ATTCCCC----------C-GACCAAATTTCTTCTT-------A---GAC-CAAATG-TAGTATTCG-GAAATACAAGCAATCCAAAAAT-TAGGTAGCGCGTCCGG------GA--AGCCGAATA-CAC-A-CA-TATAT---A------TT-TGGTTatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcttttttgttaccatgaagaaaggttatctattatgtctcccatgtacttgaagttgtatcttgtatttgcaaaagtaagattaataggattgtattgtcttttgatcaataggttcccctcttcttttgaaactgttgtgcctatgtaaatacctctatccgaataacaagtttattagatataacttaacacaactccaagaatctttaaatttattttcagcctgtcaacctgtacagagcagaagtgcgtaaacaatgttgggaggtatattcccccgaccaaatttcttcttagaccaaatgtagtattcggaaatacaagcaatccaaaaattaggtagcgcgtccgggaagccgaatacacacatatatatttggtt
gi|10 : taggccaaacaaaataatatgtgtgtttcctgtttcatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcCTTA--C-GCGAAGAAATAG--T--------AT--------G-----T--CCA-TGT-ACTTTGAAGT-TGTT---A-T---------------------------CATGTAT----CTG-AAAA--G
gi|11 : atgtgtttcctgtttcatactagaaaaaaaatataagtatgtaggtacatgtatagggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAAA--GT---AAAAT-ATA---GA--TCTT-T---ATT--GTTCTTTTGAT------GTT-CCCT-CTTT----GAAATT---TTATTG---CCTATG-------TATA-AAACTT--------ACC-------TGGTGCCAGTTTA-----TATACA-T----ACA-A-CTC--AGGACTTTTGCTATGCACA--TTTTTCA-CCTGTC--TGTTGT-GCAG-GCATGAAG
gi|12 : t-GTAAA-AAT---GTT---------------------------TGGGA-------------T-T-TTTTCCC----------CTGACGAAA----TT--T-------A---AAA-AAAATGTTAG-GTCTG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------TT-TTCTTTGG
gi|13 : T---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-TCATGAAGTT-GTAAA-AAT---GGT--GGGGTGGGG---------------GTGGGG-------------T-TGTTGTTGT----------T-GTTGAAA----TTCTT-------G---AAACAAAATTTTAG-GGTCG-GGAt
gi|14 : -------A---AAA-AAAACTTTAG-GGTCG-GGAA-ATTGCC-ATCCAAAAAT-TAGGTAG---TGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---G------TT-
gi|15 : gaaattttcaattttagccGCTT----TTG-AAAA--GT---AAAAT-AAA---GA--TCTTAT---ATT--GC-CTTCTGAT--AT--GTC-CCCT-ATTCTTTGAAAACT---TT--TG---CC-
gi|16 : AAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|17 : A--AGCAGGAAA-CAA-A-GA-TAT-T----------TT-TTTTTTGGCCTcatctttagttccacttggataagcatctgtgatgcaca
gi|18 : atctg------GA--AATAGGTAA-CAC-A-CA-TAT-T---A------TT-TTGTATGGCTTgcaaggcaaaaaaaaatccagtaggtaggt
gi|19 : AAATATAGGGAA---GGTCGG------GT--AACCGGAAC-CAT-A-CA-TAT-T---T------TTGTTATTTGGCCTataccagaaaaaaataggcagagtactagtagg
gi|2 : ctaaaaatgc------GA--AACAGGAAAACAC-AACA-TAT-T---A------TTATTGTCTGACCTAAta
gi|2 : TTTTT---TCTTATAC-GTGTAAAAAT-G--T--------AT--------GTATGCT--CCAATGT-AC-TTGAAGT-TGTT---A-T---------------------------CATGTTT----CTG-AGAAACGTTTAAGAATCAAG---GAC-TCTTATTTAATT--GT-CTTCTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATGGCCCATGTATA-AA--CT--------AGTAT-----TAAT--CAGTTTA----ATATA--CT----ACA-A-CTC--AGG------------C-CA--TTTT-TA-CCTGTC--CACTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT---------------------------TAGAG-------------T-T-TTTTCCC----------C-AACGAAA----TTCTT-------T---TAA-AAAATGTTGG-GTTCG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAC---GGTCAG------GA--AACCGGAA---AC-A-CA-TGT-T---A------TT-TTtatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtattttttcttatacgtgtaaaaatgtatgtatgctccaatgtacttgaagttgttatcatgtttctgagaaacgtttaagaatcaaggactcttatttaattgtcttctgatatgttccctcttctttggaaacttttgccatggcccatgtataaactagtattaatcagtttaatatactacaactcaggccatttttacctgtccactgtgcaggcatgaagtggtaaaaatgtttagagttttttccccaacgaaattcttttaaaaaatgttgggttcgggaaatcagcatcccaaaattaggtacggtcaggaaaccggaaacacatgttatttt
gi|20 : ttaggtcagacaataataatatgttgtgttttcctgtttctatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtaAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC------TAT-TTTCA------TT-TTGTTTG
gi|21 : ------GA--AACGGGAAG-CAC-A-TA-TAT-T---A------TT-TTGTTTG
gi|22 : t---GGTCGG------GT--AACCGGAAA-CAC-A-CA-TAT-T----------TG-TT-TTTGGCCTAataccagag
gi|3 : aTTCTTT---TTTTA--T-GCAAAGAAAT-G--C--------AT--------GT----T--ACA-TGT-AC-TCATAGT-TGTT---A-TTTCATGCACTTTTAA------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---A----GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAACT---CT--TG---CC-ATA-------TATA---------------ACTGT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--ATGACTTTT---ATGC-CA--TTTT-CA-CCGGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AATNCAGTA--AAGAT---GT--------------TTTGGA-------------T-T-TTTTTCT----------T-AACGAAA----TTCGT-------G---AAA-AAAATTTTAG-GGTCA-GGAA-ATTGGC-ATTCCAAAAT-TAGGTAG---GGTCAG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|4 : gccTTTTT---TCTTA--C-ATGAAAAAAT-G--T--------ATCAGCCTATGT----T--CCAATG--AC-TTGAAGT-TGTT---A-TT-------------A-------------ATGTTT----CTG-AA----GT---AAAAT-AAA---GA--TCTTGT---ATT--G--CTTTTGAT--AT--GTC-CCCTTCTTCTTTGGAAACTCCTTT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATA--CT----ACA-A-CTC--AAGACTT-----ATGT-CAGTTTTC-CA-CCT-TC--AACTGTTGCAG-GCATGAAGTG-GTAAA-AAT---GTT------T---G-----------------GGGG-------------T-T-TT---CC----------C-AACGAAA----TTCTTTAAAAAAA---AAA-AAAAGCTTCG-ATTCGAGGAA-ATCAG--ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGG-AA-CAC-A-CATTAT-G---A------TT-TTGTTTGGC
gi|5 : TTTTT---TCTTA--T-GCAAAGAA-T-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGTATATT---A-T---------------------------CATGTTT----CTG-A----------------------GA--TCTTGT---ATT---T-CTTCTGAC--AT--GT---CCT-CTTCTTTG-AGACT---TT---G---AC-ATA-------CATATAA--CT--------ACTAT------AAT--CA-TTTA----ATATGTACT----ACATA-CTC--AGGACTTTT---ATGC-CA---TTT-CA--CTGTC--CACTGT-GCA--GTATGAAGTG-G-AAA-AAT---GTT---------------------------------------------T-C-CCCCCCCCCCCCCCCCCC-G-CAAAA----TCTTT-------AAT-AAA-AAAATGTTAG-GTTTA-GG-A-ATCAGC-ATCTCAAAAT-TAGGTA----GGTTGGACACCAGAACAGCCAGAAA-CAT-A-CA-TAT-T---A------TT-TTGTT
gi|6 : ttgc---TTTTA--T-TTGAAGATAT-G--T--------AT--------GT----T--AAA-TTT-AC-TTGAAGT-TGTTGTTA-TTT------------AATGCACTTTGAACATGTTT----CTG-AA---------------------------CTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAAC-----------------------------A-AA--CT--------ACTAT-----TAAT--CAGTTTA----TTATACA------ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCAGTC--CGCTGT-GCAG-GCGTGAAGTG-GTAAA-AAT---GTT--GGG-----------------------GGG------------------TTTTCCC----------T-GATGAAA----TTGGTAA-----A---AAA-AAAAATTTAG-GGTCG-GGAA-ATTGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AAC-----A-CAC-A-TA-TAT-T---ATGTAGTTC-TTGTTTGGCC
gi|7 : ------GA--AACAGGAAA-CACAA-CA-TAT-T---G------AT-TTG-TTGGCCTAA
gi|7 : gTTTTTTAAATTTTA--C-GTGACGAA-T-GCCT--------AT--------GT----T--C-A-TGTTAC-TTGAA-T-TGTT---AATTT------------ATGCCACTTCAAACATGTTTTTTTCTT-AAAA---T---AAAAT-AAG---GAGTCCTTGT---ATCTCGT-CATTTGATG-AT--CTT-CCCT-CTTCCTTTGAAACT---TT--TG---CC-ATG-------TCTA-AA--CTACTATTAAACTAT-----TAAT--CAGTTTA------ATATACT----ACA-ATCTCA-AGGAATTTA---ATGC-CA--TTTtatactcaagaaataaatataggtggatacaaggtaagggaatttttttttttttttaaattttacgtgacgaatgcctatgttcatgttacttgaattgttaatttatgccacttcaaacatgtttttttcttaaaataaaataaggagtccttgtatctcgtcatttgatgatcttccctcttcctttgaaacttttgccatgtctaaactactattaaactattaatcagtttaatatactacaatctcaaggaatttaatgccattt
gi|8 : gttaggccaacaaatcaatatgttgtgtttcctgtttctatactcaagaaataaatataggtggatacaaggtaagggaatttttttttAA----TT-TT-------AGCCAAA-AAAATTTTAG-GGTCG-GGAA-ATTGGC-ATCCAAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAACCAC-A-CA-TAT-T---A------TT-TTGTTTGGCCT
gi|9 : ctactttttttttcatgtgagacaagtagtaaaccgtttgtcagaaattttcCTGT-GCAG-GCTTCAAGTG-GTCAA-ATT---GTTCTGGGGT---AACCGAGGCTGAGTTTTTGGGGGGGTTTTGGTTTTT-T-TTTTTCT----------C-GACGAAA----TTCAC-------A---AGA-AAAATGTTAG-GTTTG-GGAA-ATTGGT-ATCCCAAAAT-TAGATAG---CGTTAG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------catcatcattaatagagtatattttgaaggttttatcattctattgtgtcattgt
Alignments
lowQualScore : 111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111111111111111 1111 1 000000000000000000000000000 111111111 1111111 111 11 1111111 11111111 11111 11111 11111111 11 111 111111111111111111111111111111111111111111111111111 1111111111 22222222222
lowQualScore : 000 7777 3 5 66 888888888888888888 0000 66 0 5 5 5 888 5 000000000000000000000000000 9999 4 111111111 0000000 111 777 66 4 00 66 4 4 0 777 66 777 4 6666666 55 66 88888888 22222 66 77777 77777777 5 5 11 0 333 4 66 5 5 66 2 4 4 4 4 4 000000000000000000000000000000000000000000000000000 4 4 0 9999999999 4 8888 44 44444444444 3 1 3 1 3 4 0 4 3 555 666666 22 2 4 2 2 2 2 8888888888 4
lowQualScore : ... .... . . .. .................. .... .. . . . . ... . ........................... .... . ......... ....... ... ... .. . .. .. . . . ... .. ... . ....... .. .. ........ ..... .. ..... ........ . . .. . ... . .. . . .. . . . . . . ................................................... . . . .......... . .... .. ........... . . . . . . . . . ... ...... .. . . . . . . .......... .
lowQualScore : 000 9999 2 0 99 222222222222222222 6666 99 0 0 0 0 888 0 444444444444444444444444444 4444 0 000000000 3333333 333 888 11 4 66 11 4 4 9 888 11 888 4 2222222 44 99 11111111 55555 99 11111 22222222 0 0 99 1 999 4 11 0 0 99 2 4 4 4 4 4 666666666666666666666666666666666666666666666666666 4 4 8 4444444444 4 5555 99 33333333333 6 0 6 9 6 0 5 0 3 444 444444 99 2 0 0 0 0 0 0000000000 2
consensus : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT-GT----T---G----GG-G----------------TGGGG-------------T-T-TTTTCC----------CC-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
Reference ( family-234 ) : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT-GT----T---G----GGTG----------------TGGGG-------------T-T-TTTTCC----------CC-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|1 : ------GA--AACAGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTA
gi|1 : TTTTT---TGTTA--CCATGAAGAAAG-G--TTATCTATTAT--------GT----CTCCCA-TGT-AC-TTGAAGT-TG-T---A-TCT---------------------------TGTAT----TTGCAAAA--GT---AAGAT-TAATAGGA----TTGT---ATT--GT-CTTTTGATCAATAGGTTCCCCT-CTTCTTTTGAAACT---GT--TGTGCCT-ATG-------TAAA-TA--CC--------TCTATCCGAATAAC--AAGTTTATTAGATATA-ACTTAACACA-A-CTCCAAGAATCTTTAA-AT-T-TA--TTTT-CAGCCTGTCAAC-CTGT-ACAGAGCA-GAAGTGCGTAAACAAT-GT----T---G----G--------------------GAGG-------------TAT-ATTCCC----------CC-GACCAAATTTCTTCTT-------A---GAC-CAAATG-TAGTATTCG-GAAATACAAGCAATCCAAAAAT-TAGGTAGCGCGTCCGG------GA--AGCCGAATA-CAC-A-CA-TATAT---A------TT-TGGTTatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcttttttgttaccatgaagaaaggttatctattatgtctcccatgtacttgaagttgtatcttgtatttgcaaaagtaagattaataggattgtattgtcttttgatcaataggttcccctcttcttttgaaactgttgtgcctatgtaaatacctctatccgaataacaagtttattagatataacttaacacaactccaagaatctttaaatttattttcagcctgtcaacctgtacagagcagaagtgcgtaaacaatgttgggaggtatattcccccgaccaaatttcttcttagaccaaatgtagtattcggaaatacaagcaatccaaaaattaggtagcgcgtccgggaagccgaatacacacatatatatttggtt
gi|10 : taggccaaacaaaataatatgtgtgtttcctgtttcatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcCTTA--C-GCGAAGAAATAG--T--------AT--------G-----T--CCA-TGT-ACTTTGAAGT-TGTT---A-T---------------------------CATGTAT----CTG-AAAA--G
gi|11 : atgtgtttcctgtttcatactagaaaaaaaatataagtatgtaggtacatgtatagggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAAA--GT---AAAAT-ATA---GA--TCTT-T---ATT--GTTCTTTTGAT------GTT-CCCT-CTTT----GAAATT---TTATTG---CCTATG-------TATA-AAACTT--------ACC-------TGGTGCCAGTTTA-----TATACA-T----ACA-A-CTC--AGGACTTTTGCTATGCACA--TTTTTCA-CCTGTC--TGTTGT-GCAG-GCATGAAG
gi|12 : t-GTAAA-AAT-GT----T----------------------------TGGGA-------------T-T-TTTTCC----------CCTGACGAAA----TT--T-------A---AAA-AAAATGTTAG-GTCTG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------TT-TTCTTTGG
gi|13 : T---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-TCATGAAGTT-GTAAA-AATGGTGGGGT---G----GGGG----------------TGGGG-------------T-TGTTGTTG----------TT-GTTGAAA----TTCTT-------G---AAACAAAATTTTAG-GGTCG-GGAt
gi|14 : -------A---AAA-AAAACTTTAG-GGTCG-GGAA-ATTGCC-ATCCAAAAAT-TAGGTAG---TGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---G------TT-
gi|15 : gaaattttcaattttagccGCTT----TTG-AAAA--GT---AAAAT-AAA---GA--TCTTAT---ATT--GC-CTTCTGAT--AT--GTC-CCCT-ATTCTTTGAAAACT---TT--TG---CC-
gi|16 : AAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|17 : A--AGCAGGAAA-CAA-A-GA-TAT-T----------TT-TTTTTTGGCCTcatctttagttccacttggataagcatctgtgatgcaca
gi|18 : atctg------GA--AATAGGTAA-CAC-A-CA-TAT-T---A------TT-TTGTATGGCTTgcaaggcaaaaaaaaatccagtaggtaggt
gi|19 : AAATATAGGGAA---GGTCGG------GT--AACCGGAAC-CAT-A-CA-TAT-T---T------TTGTTATTTGGCCTataccagaaaaaaataggcagagtactagtagg
gi|2 : ctaaaaatgc------GA--AACAGGAAAACAC-AACA-TAT-T---A------TTATTGTCTGACCTAAta
gi|2 : TTTTT---TCTTATAC-GTGTAAAAAT-G--T--------AT--------GTATGCT--CCAATGT-AC-TTGAAGT-TGTT---A-T---------------------------CATGTTT----CTG-AGAAACGTTTAAGAATCAAG---GAC-TCTTATTTAATT--GT-CTTCTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATGGCCCATGTATA-AA--CT--------AGTAT-----TAAT--CAGTTTA----ATATA--CT----ACA-A-CTC--AGG------------C-CA--TTTT-TA-CCTGTC--CACTGT-GCAG-GCATGAAGTG-GTAAA-AAT-GT----T----------------------------TAGAG-------------T-T-TTTTCC----------CC-AACGAAA----TTCTT-------T---TAA-AAAATGTTGG-GTTCG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAC---GGTCAG------GA--AACCGGAA---AC-A-CA-TGT-T---A------TT-TTtatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtattttttcttatacgtgtaaaaatgtatgtatgctccaatgtacttgaagttgttatcatgtttctgagaaacgtttaagaatcaaggactcttatttaattgtcttctgatatgttccctcttctttggaaacttttgccatggcccatgtataaactagtattaatcagtttaatatactacaactcaggccatttttacctgtccactgtgcaggcatgaagtggtaaaaatgtttagagttttttccccaacgaaattcttttaaaaaatgttgggttcgggaaatcagcatcccaaaattaggtacggtcaggaaaccggaaacacatgttatttt
gi|20 : ttaggtcagacaataataatatgttgtgttttcctgtttctatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtaAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC------TAT-TTTCA------TT-TTGTTTG
gi|21 : ------GA--AACGGGAAG-CAC-A-TA-TAT-T---A------TT-TTGTTTG
gi|22 : t---GGTCGG------GT--AACCGGAAA-CAC-A-CA-TAT-T----------TG-TT-TTTGGCCTAataccagag
gi|3 : aTTCTTT---TTTTA--T-GCAAAGAAAT-G--C--------AT--------GT----T--ACA-TGT-AC-TCATAGT-TGTT---A-TTTCATGCACTTTTAA------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---A----GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAACT---CT--TG---CC-ATA-------TATA---------------ACTGT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--ATGACTTTT---ATGC-CA--TTTT-CA-CCGGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT-NC----A---GTAAAGATGTT--------------TTGGA-------------T-T-TTTTTC----------TT-AACGAAA----TTCGT-------G---AAA-AAAATTTTAG-GGTCA-GGAA-ATTGGC-ATTCCAAAAT-TAGGTAG---GGTCAG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|4 : gccTTTTT---TCTTA--C-ATGAAAAAAT-G--T--------ATCAGCCTATGT----T--CCAATG--AC-TTGAAGT-TGTT---A-TT-------------A-------------ATGTTT----CTG-AA----GT---AAAAT-AAA---GA--TCTTGT---ATT--G--CTTTTGAT--AT--GTC-CCCTTCTTCTTTGGAAACTCCTTT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATA--CT----ACA-A-CTC--AAGACTT-----ATGT-CAGTTTTC-CA-CCT-TC--AACTGTTGCAG-GCATGAAGTG-GTAAA-AAT-GT----T----------TG-----------------GGGG-------------T-T-TT---C----------CC-AACGAAA----TTCTTTAAAAAAA---AAA-AAAAGCTTCG-ATTCGAGGAA-ATCAG--ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGG-AA-CAC-A-CATTAT-G---A------TT-TTGTTTGGC
gi|5 : TTTTT---TCTTA--T-GCAAAGAA-T-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGTATATT---A-T---------------------------CATGTTT----CTG-A----------------------GA--TCTTGT---ATT---T-CTTCTGAC--AT--GT---CCT-CTTCTTTG-AGACT---TT---G---AC-ATA-------CATATAA--CT--------ACTAT------AAT--CA-TTTA----ATATGTACT----ACATA-CTC--AGGACTTTT---ATGC-CA---TTT-CA--CTGTC--CACTGT-GCA--GTATGAAGTG-G-AAA-AAT-GT----T----------------------------------------------T-C-CCCCCCCCCCCCCCCCCC-G-CAAAA----TCTTT-------AAT-AAA-AAAATGTTAG-GTTTA-GG-A-ATCAGC-ATCTCAAAAT-TAGGTA----GGTTGGACACCAGAACAGCCAGAAA-CAT-A-CA-TAT-T---A------TT-TTGTT
gi|6 : ttgc---TTTTA--T-TTGAAGATAT-G--T--------AT--------GT----T--AAA-TTT-AC-TTGAAGT-TGTTGTTA-TTT------------AATGCACTTTGAACATGTTT----CTG-AA---------------------------CTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAAC-----------------------------A-AA--CT--------ACTAT-----TAAT--CAGTTTA----TTATACA------ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCAGTC--CGCTGT-GCAG-GCGTGAAGTG-GTAAA-AAT-GT----T---G----GG-------------------GGG------------------TTTTCC----------CT-GATGAAA----TTGGTAA-----A---AAA-AAAAATTTAG-GGTCG-GGAA-ATTGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AAC-----A-CAC-A-TA-TAT-T---ATGTAGTTC-TTGTTTGGCC
gi|7 : ------GA--AACAGGAAA-CACAA-CA-TAT-T---G------AT-TTG-TTGGCCTAA
gi|7 : gTTTTTTAAATTTTA--C-GTGACGAA-T-GCCT--------AT--------GT----T--C-A-TGTTAC-TTGAA-T-TGTT---AATTT------------ATGCCACTTCAAACATGTTTTTTTCTT-AAAA---T---AAAAT-AAG---GAGTCCTTGT---ATCTCGT-CATTTGATG-AT--CTT-CCCT-CTTCCTTTGAAACT---TT--TG---CC-ATG-------TCTA-AA--CTACTATTAAACTAT-----TAAT--CAGTTTA------ATATACT----ACA-ATCTCA-AGGAATTTA---ATGC-CA--TTTtatactcaagaaataaatataggtggatacaaggtaagggaatttttttttttttttaaattttacgtgacgaatgcctatgttcatgttacttgaattgttaatttatgccacttcaaacatgtttttttcttaaaataaaataaggagtccttgtatctcgtcatttgatgatcttccctcttcctttgaaacttttgccatgtctaaactactattaaactattaatcagtttaatatactacaatctcaaggaatttaatgccattt
gi|8 : gttaggccaacaaatcaatatgttgtgtttcctgtttctatactcaagaaataaatataggtggatacaaggtaagggaatttttttttAA----TT-TT-------AGCCAAA-AAAATTTTAG-GGTCG-GGAA-ATTGGC-ATCCAAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAACCAC-A-CA-TAT-T---A------TT-TTGTTTGGCCT
gi|9 : ctactttttttttcatgtgagacaagtagtaaaccgtttgtcagaaattttcCTGT-GCAG-GCTTCAAGTG-GTCAA-ATT-GT----TCTGG----GGTAACCGAGGCTGAGTTTTTGGGGGGGTTTTGGTTTTT-T-TTTTTC----------TC-GACGAAA----TTCAC-------A---AGA-AAAATGTTAG-GTTTG-GGAA-ATTGGT-ATCCCAAAAT-TAGATAG---CGTTAG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------catcatcattaatagagtatattttgaaggttttatcattctattgtgtcattgt
Alignments
lowQualScore : 111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111111111111111 1111 1 000000000000000000000000000 111111111 1111111 111 11 1111111 11111111 11111 11111 11111111 11 111 00000000000000000000000000000000000000000000000000000000000000000 22222222222
lowQualScore : 000 7777 3 5 66 888888888888888888 0000 66 0 5 5 5 888 5 000000000000000000000000000 9999 4 111111111 0000000 111 777 66 4 00 66 4 4 0 777 66 777 4 6666666 5 66 88888888 22222 66 77777 77777777 5 5 11 0 333 4 66 5 5 66 2 4 4 4 4 777 66666666666666666666666666666666666666666666666666666666666666666 4 8888 44 44444444444 3 1 3 1 3 4 0 4 3 555 666666 22 2 4 2 2 2 2 8888888888 4
lowQualScore : ... .... . . .. .................. .... .. . . . . ... . ........................... .... . ......... ....... ... ... .. . .. .. . . . ... .. ... . ....... . .. ........ ..... .. ..... ........ . . .. . ... . .. . . .. . . . . . ... ................................................................. . .... .. ........... . . . . . . . . . ... ...... .. . . . . . . .......... .
lowQualScore : 000 9999 2 0 99 222222222222222222 6666 99 0 0 0 0 888 0 444444444444444444444444444 4444 0 000000000 3333333 333 888 11 4 66 11 4 4 9 888 11 888 4 2222222 0 99 11111111 55555 99 11111 22222222 0 0 99 1 999 4 11 0 0 99 2 4 4 4 4 888 22222222222222222222222222222222222222222222222222222222222222222 4 5555 99 33333333333 6 0 6 9 6 0 5 0 3 444 444444 99 2 0 0 0 0 0 0000000000 2
consensus : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT--GGGG------------------TG----GGG-------------T-TTTT-TC----------CCC-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
Reference ( family-234 ) : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT--GGGG------------------TG----GGG-------------T-TTTT-TC----------CCC-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|1 : ------GA--AACAGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTA
gi|1 : TTTTT---TGTTA--CCATGAAGAAAG-G--TTATCTATTAT--------GT----CTCCCA-TGT-AC-TTGAAGT-TG-T---A-TCT---------------------------TGTAT----TTGCAAAA--GT---AAGAT-TAATAGGA----TTGT---ATT--GT-CTTTTGATCAATAGGTTCCCCT-CTTCTTTTGAAACT---GT--TGTGCCT-ATG-------TAAA-TA--CC--------TCTATCCGAATAAC--AAGTTTATTAGATATA-ACTTAACACA-A-CTCCAAGAATCTTTAA-AT-T-TA--TTTT-CAGCCTGTCAAC-CTGT-ACAGAGCA-GAAGTGCGTAAACAAT---GTT--GG---------------------G----AGG-------------TATATT-CC----------CCC-GACCAAATTTCTTCTT-------A---GAC-CAAATG-TAGTATTCG-GAAATACAAGCAATCCAAAAAT-TAGGTAGCGCGTCCGG------GA--AGCCGAATA-CAC-A-CA-TATAT---A------TT-TGGTTatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcttttttgttaccatgaagaaaggttatctattatgtctcccatgtacttgaagttgtatcttgtatttgcaaaagtaagattaataggattgtattgtcttttgatcaataggttcccctcttcttttgaaactgttgtgcctatgtaaatacctctatccgaataacaagtttattagatataacttaacacaactccaagaatctttaaatttattttcagcctgtcaacctgtacagagcagaagtgcgtaaacaatgttgggaggtatattcccccgaccaaatttcttcttagaccaaatgtagtattcggaaatacaagcaatccaaaaattaggtagcgcgtccgggaagccgaatacacacatatatatttggtt
gi|10 : taggccaaacaaaataatatgtgtgtttcctgtttcatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcCTTA--C-GCGAAGAAATAG--T--------AT--------G-----T--CCA-TGT-ACTTTGAAGT-TGTT---A-T---------------------------CATGTAT----CTG-AAAA--G
gi|11 : atgtgtttcctgtttcatactagaaaaaaaatataagtatgtaggtacatgtatagggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAAA--GT---AAAAT-ATA---GA--TCTT-T---ATT--GTTCTTTTGAT------GTT-CCCT-CTTT----GAAATT---TTATTG---CCTATG-------TATA-AAACTT--------ACC-------TGGTGCCAGTTTA-----TATACA-T----ACA-A-CTC--AGGACTTTTGCTATGCACA--TTTTTCA-CCTGTC--TGTTGT-GCAG-GCATGAAG
gi|12 : t-GTAAA-AAT---GTT------------------------TG----GGA-------------T-TTTT-TC----------CCCTGACGAAA----TT--T-------A---AAA-AAAATGTTAG-GTCTG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------TT-TTCTTTGG
gi|13 : T---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-TCATGAAGTT-GTAAA-AAT---GGT--GGGG------------------TG----GGGGTGGGG-------T-TGTTGTT----------GTT-GTTGAAA----TTCTT-------G---AAACAAAATTTTAG-GGTCG-GGAt
gi|14 : -------A---AAA-AAAACTTTAG-GGTCG-GGAA-ATTGCC-ATCCAAAAAT-TAGGTAG---TGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---G------TT-
gi|15 : gaaattttcaattttagccGCTT----TTG-AAAA--GT---AAAAT-AAA---GA--TCTTAT---ATT--GC-CTTCTGAT--AT--GTC-CCCT-ATTCTTTGAAAACT---TT--TG---CC-
gi|16 : AAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|17 : A--AGCAGGAAA-CAA-A-GA-TAT-T----------TT-TTTTTTGGCCTcatctttagttccacttggataagcatctgtgatgcaca
gi|18 : atctg------GA--AATAGGTAA-CAC-A-CA-TAT-T---A------TT-TTGTATGGCTTgcaaggcaaaaaaaaatccagtaggtaggt
gi|19 : AAATATAGGGAA---GGTCGG------GT--AACCGGAAC-CAT-A-CA-TAT-T---T------TTGTTATTTGGCCTataccagaaaaaaataggcagagtactagtagg
gi|2 : ctaaaaatgc------GA--AACAGGAAAACAC-AACA-TAT-T---A------TTATTGTCTGACCTAAta
gi|2 : TTTTT---TCTTATAC-GTGTAAAAAT-G--T--------AT--------GTATGCT--CCAATGT-AC-TTGAAGT-TGTT---A-T---------------------------CATGTTT----CTG-AGAAACGTTTAAGAATCAAG---GAC-TCTTATTTAATT--GT-CTTCTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATGGCCCATGTATA-AA--CT--------AGTAT-----TAAT--CAGTTTA----ATATA--CT----ACA-A-CTC--AGG------------C-CA--TTTT-TA-CCTGTC--CACTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT------------------------TA----GAG-------------T-TTTT-TC----------CCC-AACGAAA----TTCTT-------T---TAA-AAAATGTTGG-GTTCG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAC---GGTCAG------GA--AACCGGAA---AC-A-CA-TGT-T---A------TT-TTtatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtattttttcttatacgtgtaaaaatgtatgtatgctccaatgtacttgaagttgttatcatgtttctgagaaacgtttaagaatcaaggactcttatttaattgtcttctgatatgttccctcttctttggaaacttttgccatggcccatgtataaactagtattaatcagtttaatatactacaactcaggccatttttacctgtccactgtgcaggcatgaagtggtaaaaatgtttagagttttttccccaacgaaattcttttaaaaaatgttgggttcgggaaatcagcatcccaaaattaggtacggtcaggaaaccggaaacacatgttatttt
gi|20 : ttaggtcagacaataataatatgttgtgttttcctgtttctatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtaAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC------TAT-TTTCA------TT-TTGTTTG
gi|21 : ------GA--AACGGGAAG-CAC-A-TA-TAT-T---A------TT-TTGTTTG
gi|22 : t---GGTCGG------GT--AACCGGAAA-CAC-A-CA-TAT-T----------TG-TT-TTTGGCCTAataccagag
gi|3 : aTTCTTT---TTTTA--T-GCAAAGAAAT-G--C--------AT--------GT----T--ACA-TGT-AC-TCATAGT-TGTT---A-TTTCATGCACTTTTAA------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---A----GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAACT---CT--TG---CC-ATA-------TATA-A--------------CTGT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--ATGACTTTT---ATGC-CA--TTTT-CA-CCGGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AATNCAGTA--AAGA------------------TGTTTTGGA-------------T-TTTT-TT----------CTT-AACGAAA----TTCGT-------G---AAA-AAAATTTTAG-GGTCA-GGAA-ATTGGC-ATTCCAAAAT-TAGGTAG---GGTCAG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|4 : gccTTTTT---TCTTA--C-ATGAAAAAAT-G--T--------ATCAGCCTATGT----T--CCAATG--AC-TTGAAGT-TGTT---A-TT-------------A-------------ATGTTT----CTG-AA----GT---AAAAT-AAA---GA--TCTTGT---ATT--G--CTTTTGAT--AT--GTC-CCCTTCTTCTTTGGAAACTCCTTT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATA--CT----ACA-A-CTC--AAGACTT-----ATGT-CAGTTTTC-CA-CCT-TC--AACTGTTGCAG-GCATGAAGTG-GTAAA-AAT---GTT--TGGG-------------------------GG-------------T-TTT--------------CCC-AACGAAA----TTCTTTAAAAAAA---AAA-AAAAGCTTCG-ATTCGAGGAA-ATCAG--ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGG-AA-CAC-A-CATTAT-G---A------TT-TTGTTTGGC
gi|5 : TTTTT---TCTTA--T-GCAAAGAA-T-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGTATATT---A-T---------------------------CATGTTT----CTG-A----------------------GA--TCTTGT---ATT---T-CTTCTGAC--AT--GT---CCT-CTTCTTTG-AGACT---TT---G---AC-ATA-------CATATAA--CT--------ACTAT------AAT--CA-TTTA----ATATGTACT----ACATA-CTC--AGGACTTTT---ATGC-CA---TTT-CA--CTGTC--CACTGT-GCA--GTATGAAGTG-G-AAA-AAT---GTT----------------------------------------------T-CCCC-CCCCCCCCCCCCCCC-G-CAAAA----TCTTT-------AAT-AAA-AAAATGTTAG-GTTTA-GG-A-ATCAGC-ATCTCAAAAT-TAGGTA----GGTTGGACACCAGAACAGCCAGAAA-CAT-A-CA-TAT-T---A------TT-TTGTT
gi|6 : ttgc---TTTTA--T-TTGAAGATAT-G--T--------AT--------GT----T--AAA-TTT-AC-TTGAAGT-TGTTGTTA-TTT------------AATGCACTTTGAACATGTTT----CTG-AA---------------------------CTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAAC-----------------------------A-AA--CT--------ACTAT-----TAAT--CAGTTTA----TTATACA------ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCAGTC--CGCTGT-GCAG-GCGTGAAGTG-GTAAA-AAT---GTT--GGGG-------------------G----G------------------TTT-TC----------CCT-GATGAAA----TTGGTAA-----A---AAA-AAAAATTTAG-GGTCG-GGAA-ATTGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AAC-----A-CAC-A-TA-TAT-T---ATGTAGTTC-TTGTTTGGCC
gi|7 : ------GA--AACAGGAAA-CACAA-CA-TAT-T---G------AT-TTG-TTGGCCTAA
gi|7 : gTTTTTTAAATTTTA--C-GTGACGAA-T-GCCT--------AT--------GT----T--C-A-TGTTAC-TTGAA-T-TGTT---AATTT------------ATGCCACTTCAAACATGTTTTTTTCTT-AAAA---T---AAAAT-AAG---GAGTCCTTGT---ATCTCGT-CATTTGATG-AT--CTT-CCCT-CTTCCTTTGAAACT---TT--TG---CC-ATG-------TCTA-AA--CTACTATTAAACTAT-----TAAT--CAGTTTA------ATATACT----ACA-ATCTCA-AGGAATTTA---ATGC-CA--TTTtatactcaagaaataaatataggtggatacaaggtaagggaatttttttttttttttaaattttacgtgacgaatgcctatgttcatgttacttgaattgttaatttatgccacttcaaacatgtttttttcttaaaataaaataaggagtccttgtatctcgtcatttgatgatcttccctcttcctttgaaacttttgccatgtctaaactactattaaactattaatcagtttaatatactacaatctcaaggaatttaatgccattt
gi|8 : gttaggccaacaaatcaatatgttgtgtttcctgtttctatactcaagaaataaatataggtggatacaaggtaagggaatttttttttAA----TT-TT-------AGCCAAA-AAAATTTTAG-GGTCG-GGAA-ATTGGC-ATCCAAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAACCAC-A-CA-TAT-T---A------TT-TTGTTTGGCCT
gi|9 : ctactttttttttcatgtgagacaagtagtaaaccgtttgtcagaaattttcCTGT-GCAG-GCTTCAAGTG-GTCAA-ATT---GTTCTGGGGTAACCGAGGCTGAGTTTTTG----GGGGGGTTTTGGTTTTT-TTTT-TT----------CTC-GACGAAA----TTCAC-------A---AGA-AAAATGTTAG-GTTTG-GGAA-ATTGGT-ATCCCAAAAT-TAGATAG---CGTTAG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------catcatcattaatagagtatattttgaaggttttatcattctattgtgtcattgt
Alignments
lowQualScore : 111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111111111111111 1111 1 000000000000000000000000000 111111111 1111111 111 11 1111111 11111111 11111 11111 11111111 11 111 00000000000000000000000000000000000000000000000000000000000000000 22222222222
lowQualScore : 000 7777 3 5 66 888888888888888888 0000 66 0 5 5 5 888 5 000000000000000000000000000 9999 4 111111111 0000000 111 777 66 4 00 66 4 4 0 777 66 777 4 6666666 5 66 88888888 22222 66 77777 77777777 5 5 11 0 333 4 66 5 5 66 2 4 4 4 4 777 66666666666666666666666666666666666666666666666666666666666666666 4 8888 44 44444444444 3 1 3 1 3 4 0 4 3 555 666666 22 2 4 2 2 2 2 8888888888 4
lowQualScore : ... .... . . .. .................. .... .. . . . . ... . ........................... .... . ......... ....... ... ... .. . .. .. . . . ... .. ... . ....... . .. ........ ..... .. ..... ........ . . .. . ... . .. . . .. . . . . . ... ................................................................. . .... .. ........... . . . . . . . . . ... ...... .. . . . . . . .......... .
lowQualScore : 000 9999 2 0 99 222222222222222222 6666 99 0 0 0 0 888 0 444444444444444444444444444 4444 0 000000000 3333333 333 888 11 4 66 11 4 4 9 888 11 888 4 2222222 0 99 11111111 55555 99 11111 22222222 0 0 99 1 999 4 11 0 0 99 2 4 4 4 4 888 22222222222222222222222222222222222222222222222222222222222222222 4 5555 99 33333333333 6 0 6 9 6 0 5 0 3 444 444444 99 2 0 0 0 0 0 0000000000 2
consensus : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT--GGGG------------------TG----GGG-------------T-TTTT-TC----------CCC-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
Reference ( family-234 ) : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT--GGGG------------------TG----GGG-------------T-TTTT-TC----------CCC-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|1 : ------GA--AACAGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTA
gi|1 : TTTTT---TGTTA--CCATGAAGAAAG-G--TTATCTATTAT--------GT----CTCCCA-TGT-AC-TTGAAGT-TG-T---A-TCT---------------------------TGTAT----TTGCAAAA--GT---AAGAT-TAATAGGA----TTGT---ATT--GT-CTTTTGATCAATAGGTTCCCCT-CTTCTTTTGAAACT---GT--TGTGCCT-ATG-------TAAA-TA--CC--------TCTATCCGAATAAC--AAGTTTATTAGATATA-ACTTAACACA-A-CTCCAAGAATCTTTAA-AT-T-TA--TTTT-CAGCCTGTCAAC-CTGT-ACAGAGCA-GAAGTGCGTAAACAAT---GTT--GG---------------------G----AGG-------------TATATT-CC----------CCC-GACCAAATTTCTTCTT-------A---GAC-CAAATG-TAGTATTCG-GAAATACAAGCAATCCAAAAAT-TAGGTAGCGCGTCCGG------GA--AGCCGAATA-CAC-A-CA-TATAT---A------TT-TGGTTatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcttttttgttaccatgaagaaaggttatctattatgtctcccatgtacttgaagttgtatcttgtatttgcaaaagtaagattaataggattgtattgtcttttgatcaataggttcccctcttcttttgaaactgttgtgcctatgtaaatacctctatccgaataacaagtttattagatataacttaacacaactccaagaatctttaaatttattttcagcctgtcaacctgtacagagcagaagtgcgtaaacaatgttgggaggtatattcccccgaccaaatttcttcttagaccaaatgtagtattcggaaatacaagcaatccaaaaattaggtagcgcgtccgggaagccgaatacacacatatatatttggtt
gi|10 : taggccaaacaaaataatatgtgtgtttcctgtttcatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcCTTA--C-GCGAAGAAATAG--T--------AT--------G-----T--CCA-TGT-ACTTTGAAGT-TGTT---A-T---------------------------CATGTAT----CTG-AAAA--G
gi|11 : atgtgtttcctgtttcatactagaaaaaaaatataagtatgtaggtacatgtatagggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAAA--GT---AAAAT-ATA---GA--TCTT-T---ATT--GTTCTTTTGAT------GTT-CCCT-CTTT----GAAATT---TTATTG---CCTATG-------TATA-AAACTT--------ACC-------TGGTGCCAGTTTA-----TATACA-T----ACA-A-CTC--AGGACTTTTGCTATGCACA--TTTTTCA-CCTGTC--TGTTGT-GCAG-GCATGAAG
gi|12 : t-GTAAA-AAT---GTT------------------------TG----GGA-------------T-TTTT-TC----------CCCTGACGAAA----TT--T-------A---AAA-AAAATGTTAG-GTCTG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------TT-TTCTTTGG
gi|13 : T---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-TCATGAAGTT-GTAAA-AAT---GGT--GGGG------------------TG----GGGGTGGGG-------T-TGTTGTT----------GTT-GTTGAAA----TTCTT-------G---AAACAAAATTTTAG-GGTCG-GGAt
gi|14 : -------A---AAA-AAAACTTTAG-GGTCG-GGAA-ATTGCC-ATCCAAAAAT-TAGGTAG---TGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---G------TT-
gi|15 : gaaattttcaattttagccGCTT----TTG-AAAA--GT---AAAAT-AAA---GA--TCTTAT---ATT--GC-CTTCTGAT--AT--GTC-CCCT-ATTCTTTGAAAACT---TT--TG---CC-
gi|16 : AAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|17 : A--AGCAGGAAA-CAA-A-GA-TAT-T----------TT-TTTTTTGGCCTcatctttagttccacttggataagcatctgtgatgcaca
gi|18 : atctg------GA--AATAGGTAA-CAC-A-CA-TAT-T---A------TT-TTGTATGGCTTgcaaggcaaaaaaaaatccagtaggtaggt
gi|19 : AAATATAGGGAA---GGTCGG------GT--AACCGGAAC-CAT-A-CA-TAT-T---T------TTGTTATTTGGCCTataccagaaaaaaataggcagagtactagtagg
gi|2 : ctaaaaatgc------GA--AACAGGAAAACAC-AACA-TAT-T---A------TTATTGTCTGACCTAAta
gi|2 : TTTTT---TCTTATAC-GTGTAAAAAT-G--T--------AT--------GTATGCT--CCAATGT-AC-TTGAAGT-TGTT---A-T---------------------------CATGTTT----CTG-AGAAACGTTTAAGAATCAAG---GAC-TCTTATTTAATT--GT-CTTCTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATGGCCCATGTATA-AA--CT--------AGTAT-----TAAT--CAGTTTA----ATATA--CT----ACA-A-CTC--AGG------------C-CA--TTTT-TA-CCTGTC--CACTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT------------------------TA----GAG-------------T-TTTT-TC----------CCC-AACGAAA----TTCTT-------T---TAA-AAAATGTTGG-GTTCG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAC---GGTCAG------GA--AACCGGAA---AC-A-CA-TGT-T---A------TT-TTtatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtattttttcttatacgtgtaaaaatgtatgtatgctccaatgtacttgaagttgttatcatgtttctgagaaacgtttaagaatcaaggactcttatttaattgtcttctgatatgttccctcttctttggaaacttttgccatggcccatgtataaactagtattaatcagtttaatatactacaactcaggccatttttacctgtccactgtgcaggcatgaagtggtaaaaatgtttagagttttttccccaacgaaattcttttaaaaaatgttgggttcgggaaatcagcatcccaaaattaggtacggtcaggaaaccggaaacacatgttatttt
gi|20 : ttaggtcagacaataataatatgttgtgttttcctgtttctatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtaAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC------TAT-TTTCA------TT-TTGTTTG
gi|21 : ------GA--AACGGGAAG-CAC-A-TA-TAT-T---A------TT-TTGTTTG
gi|22 : t---GGTCGG------GT--AACCGGAAA-CAC-A-CA-TAT-T----------TG-TT-TTTGGCCTAataccagag
gi|3 : aTTCTTT---TTTTA--T-GCAAAGAAAT-G--C--------AT--------GT----T--ACA-TGT-AC-TCATAGT-TGTT---A-TTTCATGCACTTTTAA------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---A----GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAACT---CT--TG---CC-ATA-------TATA-A--------------CTGT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--ATGACTTTT---ATGC-CA--TTTT-CA-CCGGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AATNCAGTA--AAGA------------------TGTTTTGGA-------------T-TTTT-TT----------CTT-AACGAAA----TTCGT-------G---AAA-AAAATTTTAG-GGTCA-GGAA-ATTGGC-ATTCCAAAAT-TAGGTAG---GGTCAG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|4 : gccTTTTT---TCTTA--C-ATGAAAAAAT-G--T--------ATCAGCCTATGT----T--CCAATG--AC-TTGAAGT-TGTT---A-TT-------------A-------------ATGTTT----CTG-AA----GT---AAAAT-AAA---GA--TCTTGT---ATT--G--CTTTTGAT--AT--GTC-CCCTTCTTCTTTGGAAACTCCTTT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATA--CT----ACA-A-CTC--AAGACTT-----ATGT-CAGTTTTC-CA-CCT-TC--AACTGTTGCAG-GCATGAAGTG-GTAAA-AAT---GTT--TGGG-------------------------GG-------------T-TTT--------------CCC-AACGAAA----TTCTTTAAAAAAA---AAA-AAAAGCTTCG-ATTCGAGGAA-ATCAG--ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGG-AA-CAC-A-CATTAT-G---A------TT-TTGTTTGGC
gi|5 : TTTTT---TCTTA--T-GCAAAGAA-T-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGTATATT---A-T---------------------------CATGTTT----CTG-A----------------------GA--TCTTGT---ATT---T-CTTCTGAC--AT--GT---CCT-CTTCTTTG-AGACT---TT---G---AC-ATA-------CATATAA--CT--------ACTAT------AAT--CA-TTTA----ATATGTACT----ACATA-CTC--AGGACTTTT---ATGC-CA---TTT-CA--CTGTC--CACTGT-GCA--GTATGAAGTG-G-AAA-AAT---GTT----------------------------------------------T-CCCC-CCCCCCCCCCCCCCC-G-CAAAA----TCTTT-------AAT-AAA-AAAATGTTAG-GTTTA-GG-A-ATCAGC-ATCTCAAAAT-TAGGTA----GGTTGGACACCAGAACAGCCAGAAA-CAT-A-CA-TAT-T---A------TT-TTGTT
gi|6 : ttgc---TTTTA--T-TTGAAGATAT-G--T--------AT--------GT----T--AAA-TTT-AC-TTGAAGT-TGTTGTTA-TTT------------AATGCACTTTGAACATGTTT----CTG-AA---------------------------CTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAAC-----------------------------A-AA--CT--------ACTAT-----TAAT--CAGTTTA----TTATACA------ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCAGTC--CGCTGT-GCAG-GCGTGAAGTG-GTAAA-AAT---GTT--GGGG-------------------G----G------------------TTT-TC----------CCT-GATGAAA----TTGGTAA-----A---AAA-AAAAATTTAG-GGTCG-GGAA-ATTGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AAC-----A-CAC-A-TA-TAT-T---ATGTAGTTC-TTGTTTGGCC
gi|7 : ------GA--AACAGGAAA-CACAA-CA-TAT-T---G------AT-TTG-TTGGCCTAA
gi|7 : gTTTTTTAAATTTTA--C-GTGACGAA-T-GCCT--------AT--------GT----T--C-A-TGTTAC-TTGAA-T-TGTT---AATTT------------ATGCCACTTCAAACATGTTTTTTTCTT-AAAA---T---AAAAT-AAG---GAGTCCTTGT---ATCTCGT-CATTTGATG-AT--CTT-CCCT-CTTCCTTTGAAACT---TT--TG---CC-ATG-------TCTA-AA--CTACTATTAAACTAT-----TAAT--CAGTTTA------ATATACT----ACA-ATCTCA-AGGAATTTA---ATGC-CA--TTTtatactcaagaaataaatataggtggatacaaggtaagggaatttttttttttttttaaattttacgtgacgaatgcctatgttcatgttacttgaattgttaatttatgccacttcaaacatgtttttttcttaaaataaaataaggagtccttgtatctcgtcatttgatgatcttccctcttcctttgaaacttttgccatgtctaaactactattaaactattaatcagtttaatatactacaatctcaaggaatttaatgccattt
gi|8 : gttaggccaacaaatcaatatgttgtgtttcctgtttctatactcaagaaataaatataggtggatacaaggtaagggaatttttttttAA----TT-TT-------AGCCAAA-AAAATTTTAG-GGTCG-GGAA-ATTGGC-ATCCAAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAACCAC-A-CA-TAT-T---A------TT-TTGTTTGGCCT
gi|9 : ctactttttttttcatgtgagacaagtagtaaaccgtttgtcagaaattttcCTGT-GCAG-GCTTCAAGTG-GTCAA-ATT---GTTCTGGGGTAACCGAGGCTGAGTTTTTG----GGGGGGTTTTGGTTTTT-TTTT-TT----------CTC-GACGAAA----TTCAC-------A---AGA-AAAATGTTAG-GTTTG-GGAA-ATTGGT-ATCCCAAAAT-TAGATAG---CGTTAG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------catcatcattaatagagtatattttgaaggttttatcattctattgtgtcattgt
blockSeqs : AAA TAC A A CC ATCAGCCTAT ATGC . A T T A GTT A TTCATGCACTTTTAA TTTT . AAACGTTTA CAAG GTC TTA TC T G . . T CCT AT . T GCCCATG T AC ACTATTAA . GC A TACT T T A GCT A GT T . . G T . . . NCA CTGGGGTAACCGAGGCTGAGTTTTTGGGGGGGTTTTGGTTTTTTTTTTT T . CT TAAAAAAA C G . T A . . A . ACACCA AC C A A A T A ATGTAGT G
blockSeqs : . C A . . AT . . A . . . . . TTAATGCACTTTGAA . . AAGT ATA CT . . . . . . . . . . . . . . . . . A TACT . . . . . . . . . G . . . . . GGGGTGGGGGTGGGGTTGTTGTT . . CT AGCC . T . G . . . . . . . T C . . . . TTCA A
blockSeqs : . T A . . AT . . . . . . . . TTATGCCACTTCAAA . . AAGT AAA T . . . . . . . . . . . . . . . . . A TACT . . . . . . . . . A . . . . . AAGATGTTTTGGATTTTTTT . . CG AAT . T . G . . . . . . . C . . . . . A .
blockSeqs : . C A . . AT . . . . . . . . TA . . AAGT AAA T . . . . . . . . . . . . . . . . . A CAT . . . . . . . . . G . . . . . TCCCCCCCCCCCCCCCC . . CT AAA . G . T . . . . . . . A . . . . . A .
blockSeqs : . T A . . AT . . . . . . . . . . . AAT AAA T . . . . . . . . . . . . . . . . . T CT . . . . . . . . . A . . . . . TGGGATTTTTTC . . TT A . T . G . . . . . . . A . . . . . G .
blockSeqs : . T . . . AT . . . . . . . . . . . GT AAG T . . . . . . . . . . . . . . . . . . CT . . . . . . . . . A . . . . . TAGAGTTTTTTC . . GG G . C . T . . . . . . . C . . . . . A .
blockSeqs : C . . . AT . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . CA . . . . . . . . . G . . . . . GGGGGGTTTTC . . CA A . G . T . . . . . . . A . . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . TGGGGGTTTT . . T T . T . G . . . . . . . C . . . . . T .
blockSeqs : . . . G . T . G . . . . . . . C . . . . . A .
blockSeqs : A . G . T . . . . . G . . . . . A .
blockSeqs : . . . . C . . . . . A .
blockSeqs : . . . C . . . . . A .
blockSeqs : . . C . . . . . A .
blockSeqs : . . C . . . . . A .
blockSeqs : . . A . . . . . G .
blockSeqs : . . C . . . . . A .
blockSeqs : . . T . . . . . A .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : C*** AT**************** ** TA************************* AAA**** T** ** ** *** ***** A**** CACT**** ** *** ** **** ***
originalCons : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTT------------A------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT--GGGG------------------TG----GGG-------------T-TTTT-TC----------CCC-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
finalCons : NNNTTTTTT---TCTTAC---GCGAAGAAAT-G--TAT----------------GT----T--CCA-TGT-AC-TTGAAGT-TGTT---A-TTA-------------------------CATGTTT----CTG-AAAA--GT---AAAATAAA----GAT--CTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTAA----TATACACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT--GGGG------------------TG----GGG-------------T-TTTT-TC----------CCC-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111111111111111111 1111 1 0000000000000000000000000000000000000000000 111111111 1111111 111 11 1111111 11111111 11111 11111 22222222 11 111 00000000000000000000000000000000000000000000000000000000000000000 22222222222
lowQualScore : 000 7777 3 5 66 888888888888888888 0000 66 0 5 5 5 2222222222222222222222222222222222222222222 9999 4 111111111 0000000 111 777 66 4 00 66 4 4 0 777 66 777 4 6666666 55 66 88888888 22222 66 11111 00000000 5 5 11 0 333 4 66 5 5 66 2 4 4 4 4 777 66666666666666666666666666666666666666666666666666666666666666666 4 8888 44 44444444444 3 1 3 1 3 4 0 4 3 555 666666 22 2 4 2 2 2 2 8888888888 4
lowQualScore : ... .... . . .. .................. .... .. . . . . ........................................... .... . ......... ....... ... ... .. . .. .. . . . ... .. ... . ....... .. .. ........ ..... .. ..... ........ . . .. . ... . .. . . .. . . . . . ... ................................................................. . .... .. ........... . . . . . . . . . ... ...... .. . . . . . . .......... .
lowQualScore : 000 9999 2 0 99 222222222222222222 6666 99 0 0 0 0 6666666666666666666666666666666666666666666 4444 0 000000000 3333333 333 888 11 4 66 11 4 4 9 888 11 888 4 2222222 44 99 11111111 55555 99 00000 00000000 0 0 99 1 999 4 11 0 0 99 2 4 4 4 4 888 22222222222222222222222222222222222222222222222222222222222222222 4 5555 99 33333333333 6 0 6 9 6 0 5 0 3 444 444444 99 2 0 0 0 0 0 0000000000 2
consensus : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTTA-----------TT-------------A----------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATACACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT--GGGG------------------TG----GGG-------------T-TTTT-TC----------CCC-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
Reference ( family-234 ) : NNNTTTTTT---TCTTA--C-GCGAAGAAAT-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGT-TGTTA-----------TT-------------A----------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATACACT----ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT--GGGG------------------TG----GGG-------------T-TTTT-TC----------CCC-GACGAAA----TTCTT-------A---AAA-AAAATNTTAG-GTTCG-GGAA-ATCGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|1 : ------GA--AACAGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTA
gi|1 : TTTTT---TGTTA--CCATGAAGAAAG-G--TTATCTATTAT--------GT----CTCCCA-TGT-AC-TTGAAGT-TG-TA-----------T-------------------------------CTTGTAT----TTGCAAAA--GT---AAGAT-TAATAGGA----TTGT---ATT--GT-CTTTTGATCAATAGGTTCCCCT-CTTCTTTTGAAACT---GT--TGTGCCT-ATG-------TAAA-TA--CC--------TCTATCCGAATAAC--AAGTTTATTAGATATA-ACTTAACACA-A-CTCCAAGAATCTTTAA-AT-T-TA--TTTT-CAGCCTGTCAAC-CTGT-ACAGAGCA-GAAGTGCGTAAACAAT---GTT--GG---------------------G----AGG-------------TATATT-CC----------CCC-GACCAAATTTCTTCTT-------A---GAC-CAAATG-TAGTATTCG-GAAATACAAGCAATCCAAAAAT-TAGGTAGCGCGTCCGG------GA--AGCCGAATA-CAC-A-CA-TATAT---A------TT-TGGTTatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcttttttgttaccatgaagaaaggttatctattatgtctcccatgtacttgaagttgtatcttgtatttgcaaaagtaagattaataggattgtattgtcttttgatcaataggttcccctcttcttttgaaactgttgtgcctatgtaaatacctctatccgaataacaagtttattagatataacttaacacaactccaagaatctttaaatttattttcagcctgtcaacctgtacagagcagaagtgcgtaaacaatgttgggaggtatattcccccgaccaaatttcttcttagaccaaatgtagtattcggaaatacaagcaatccaaaaattaggtagcgcgtccgggaagccgaatacacacatatatatttggtt
gi|10 : taggccaaacaaaataatatgtgtgtttcctgtttcatatccaaaacaaaatatagtaagggtaggtagaaattattttgtctttttattattttttattttttaatttgctatttgttgcCTTA--C-GCGAAGAAATAG--T--------AT--------G-----T--CCA-TGT-ACTTTGAAGT-TGTTA-----------T-------------------------------CATGTAT----CTG-AAAA--G
gi|11 : atgtgtttcctgtttcatactagaaaaaaaatataagtatgtaggtacatgtatagggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-AAAA--GT---AAAAT-ATA---GA--TCTT-T---ATT--GTTCTTTTGAT------GTT-CCCT-CTTT----GAAATT---TTATTG---CCTATG-------TATA-AAACTT--------ACC-------TGGTGCCAGTTTA-----TATACA-T----ACA-A-CTC--AGGACTTTTGCTATGCACA--TTTTTCA-CCTGTC--TGTTGT-GCAG-GCATGAAG
gi|12 : t-GTAAA-AAT---GTT------------------------TG----GGA-------------T-TTTT-TC----------CCCTGACGAAA----TT--T-------A---AAA-AAAATGTTAG-GTCTG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------TT-TTCTTTGG
gi|13 : T---ATGC-CA--TTTT-CA-CCTGTC--CGCTGT-GCAG-TCATGAAGTT-GTAAA-AAT---GGT--GGGG------------------TG----GGGGTGGGG-------T-TGTTGTT----------GTT-GTTGAAA----TTCTT-------G---AAACAAAATTTTAG-GGTCG-GGAt
gi|14 : -------A---AAA-AAAACTTTAG-GGTCG-GGAA-ATTGCC-ATCCAAAAAT-TAGGTAG---TGTCGG------GA--AACCGGAAA-CAC-A-CA-TAT-T---G------TT-
gi|15 : gaaattttcaattttagccGCTT----TTG-AAAA--GT---AAAAT-AAA---GA--TCTTAT---ATT--GC-CTTCTGAT--AT--GTC-CCCT-ATTCTTTGAAAACT---TT--TG---CC-
gi|16 : AAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|17 : A--AGCAGGAAA-CAA-A-GA-TAT-T----------TT-TTTTTTGGCCTcatctttagttccacttggataagcatctgtgatgcaca
gi|18 : atctg------GA--AATAGGTAA-CAC-A-CA-TAT-T---A------TT-TTGTATGGCTTgcaaggcaaaaaaaaatccagtaggtaggt
gi|19 : AAATATAGGGAA---GGTCGG------GT--AACCGGAAC-CAT-A-CA-TAT-T---T------TTGTTATTTGGCCTataccagaaaaaaataggcagagtactagtagg
gi|2 : ctaaaaatgc------GA--AACAGGAAAACAC-AACA-TAT-T---A------TTATTGTCTGACCTAAta
gi|2 : TTTTT---TCTTATAC-GTGTAAAAAT-G--T--------AT--------GTATGCT--CCAATGT-AC-TTGAAGT-TGTTA-----------T-------------------------------CATGTTT----CTG-AGAAACGTTTAAGAATCAAG---GAC-TCTTATTTAATT--GT-CTTCTGAT--AT--GTT-CCCT-CTTCTTTGGAAACT---TT--TG---CC-ATGGCCCATGTATA-AA--CT--------AGTAT-----TAAT--CAGTTTA----ATATAC--T----ACA-A-CTC--AGG------------C-CA--TTTT-TA-CCTGTC--CACTGT-GCAG-GCATGAAGTG-GTAAA-AAT---GTT------------------------TA----GAG-------------T-TTTT-TC----------CCC-AACGAAA----TTCTT-------T---TAA-AAAATGTTGG-GTTCG-GGAA-ATCAGC-ATCCCAAAAT-TAGGTAC---GGTCAG------GA--AACCGGAA---AC-A-CA-TGT-T---A------TT-TTtatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtattttttcttatacgtgtaaaaatgtatgtatgctccaatgtacttgaagttgttatcatgtttctgagaaacgtttaagaatcaaggactcttatttaattgtcttctgatatgttccctcttctttggaaacttttgccatggcccatgtataaactagtattaatcagtttaatatactacaactcaggccatttttacctgtccactgtgcaggcatgaagtggtaaaaatgtttagagttttttccccaacgaaattcttttaaaaaatgttgggttcgggaaatcagcatcccaaaattaggtacggtcaggaaaccggaaacacatgttatttt
gi|20 : ttaggtcagacaataataatatgttgtgttttcctgtttctatacgctagaaaaaaaaaataggtagggtgagctaggtgaattggttgttgttggttgtaAAT-TAGGTAG---GGTCGG------GA--AACCGGAAA-CAC------TAT-TTTCA------TT-TTGTTTG
gi|21 : ------GA--AACGGGAAG-CAC-A-TA-TAT-T---A------TT-TTGTTTG
gi|22 : t---GGTCGG------GT--AACCGGAAA-CAC-A-CA-TAT-T----------TG-TT-TTTGGCCTAataccagag
gi|3 : aTTCTTT---TTTTA--T-GCAAAGAAAT-G--C--------AT--------GT----T--ACA-TGT-AC-TCATAGT-TGTTA-----------TTTCATGCACTTTTAA----------------CATGTTT----CTG-AAAA--GT---AAAAT-AAA---GA--TCTTGT---A----GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAACT---CT--TG---CC-ATA-------TATA---------------ACTGT-----TAAT--CAGTTTA----ATATATACT----ACA-A-CTC--ATGACTTTT---ATGC-CA--TTTT-CA-CCGGTC--CGCTGT-GCAG-GCATGAAGTG-GTAAA-AATNCAGTA--AAGA------------------TGTTTTGGA-------------T-TTTT-TT----------CTT-AACGAAA----TTCGT-------G---AAA-AAAATTTTAG-GGTCA-GGAA-ATTGGC-ATTCCAAAAT-TAGGTAG---GGTCAG------GA--AACCGGAAA-CAC-A-CA-TAT-T---A------TT-TTGTTTGGCCTAAA
gi|4 : gccTTTTT---TCTTA--C-ATGAAAAAAT-G--T--------ATCAGCCTATGT----T--CCAATG--AC-TTGAAGT-TGTTA-----------TT-------------A-----------------ATGTTT----CTG-AA----GT---AAAAT-AAA---GA--TCTTGT---ATT--G--CTTTTGAT--AT--GTC-CCCTTCTTCTTTGGAAACTCCTTT--TG---CC-ATG-------TATA-AA--CT--------ACTAT-----TAAT--CAGTTTA----ATATAC--T----ACA-A-CTC--AAGACTT-----ATGT-CAGTTTTC-CA-CCT-TC--AACTGTTGCAG-GCATGAAGTG-GTAAA-AAT---GTT--TGGG-------------------------GG-------------T-TTT--------------CCC-AACGAAA----TTCTTTAAAAAAA---AAA-AAAAGCTTCG-ATTCGAGGAA-ATCAG--ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AACCGG-AA-CAC-A-CATTAT-G---A------TT-TTGTTTGGC
gi|5 : TTTTT---TCTTA--T-GCAAAGAA-T-G--T--------AT--------GT----T--CCA-TGT-AC-TTGAAGTATATTA-----------T-------------------------------CATGTTT----CTG-A----------------------GA--TCTTGT---ATT---T-CTTCTGAC--AT--GT---CCT-CTTCTTTG-AGACT---TT---G---AC-ATA-------CATATAA--CT--------ACTAT------AAT--CA-TTTA----ATATGTACT----ACATA-CTC--AGGACTTTT---ATGC-CA---TTT-CA--CTGTC--CACTGT-GCA--GTATGAAGTG-G-AAA-AAT---GTT----------------------------------------------T-CCCC-CCCCCCCCCCCCCCC-G-CAAAA----TCTTT-------AAT-AAA-AAAATGTTAG-GTTTA-GG-A-ATCAGC-ATCTCAAAAT-TAGGTA----GGTTGGACACCAGAACAGCCAGAAA-CAT-A-CA-TAT-T---A------TT-TTGTT
gi|6 : ttgc---TTTTA--T-TTGAAGATAT-G--T--------AT--------GT----T--AAA-TTT-AC-TTGAAGT-TGTTG-----------TT-------------ATTTAATGCACTTTGAACATGTTT----CTG-AA---------------------------CTGT---ATT--GT-CTTTTGAT--AT--GTT-CCCT-CTTCTTTGAAAAC-----------------------------A-AA--CT--------ACTAT-----TAAT--CAGTTTA----TTATACA------ACA-A-CTC--AGGACTTTT---ATGC-CA--TTTT-CA-CCAGTC--CGCTGT-GCAG-GCGTGAAGTG-GTAAA-AAT---GTT--GGGG-------------------G----G------------------TTT-TC----------CCT-GATGAAA----TTGGTAA-----A---AAA-AAAAATTTAG-GGTCG-GGAA-ATTGGC-ATCCCAAAAT-TAGGTAG---GGTCGG------GA--AAC-----A-CAC-A-TA-TAT-T---ATGTAGTTC-TTGTTTGGCC
gi|7 : ------GA--AACAGGAAA-CACAA-CA-TAT-T---G------AT-TTG-TTGGCCTAA
gi|7 : gTTTTTTAAATTTTA--C-GTGACGAA-T-GCCT--------AT--------GT----T--C-A-TGTTAC-TTGAA-T-TGTTAATTTATGCCACTTCAA----------A----------------CATGTTTTTTTCTT-AAAA---T---AAAAT-AAG---GAGTCCTTGT---ATCTCGT-CATTTGATG-AT--CTT-CCCT-CTTCCTTTGAAACT---TT--TG---CC-ATG-------TCTA-AA--CTACTATTAAACTAT-----TAAT--CAGTTTA----ATAT--ACT----ACA-ATCTCA-AGGAATTTA---ATGC-CA--TTTtatactcaagaaataaatataggtggatacaaggtaagggaatttttttttttttttaaattttacgtgacgaatgcctatgttcatgttacttgaattgttaatttatgccacttcaaacatgtttttttcttaaaataaaataaggagtccttgtatctcgtcatttgatgatcttccctcttcctttgaaacttttgccatgtctaaactactattaaactattaatcagtttaatatactacaatctcaaggaatttaatgccattt
gi|8 : gttaggccaacaaatcaatatgttgtgtttcctgtttctatactcaagaaataaatataggtggatacaaggtaagggaatttttttttAA----TT-TT-------AGCCAAA-AAAATTTTAG-GGTCG-GGAA-ATTGGC-ATCCAAAAAT-TAGGTAG---GGTCGG------GA--AACCGGAAACCAC-A-CA-TAT-T---A------TT-TTGTTTGGCCT
gi|9 : ctactttttttttcatgtgagacaagtagtaaaccgtttgtcagaaattttcCTGT-GCAG-GCTTCAAGTG-GTCAA-ATT---GTTCTGGGGTAACCGAGGCTGAGTTTTTG----GGGGGGTTTTGGTTTTT-TTTT-TT----------CTC-GACGAAA----TTCAC-------A---AGA-AAAATGTTAG-GTTTG-GGAA-ATTGGT-ATCCCAAAAT-TAGATAG---CGTTAG------GA--AACTGGAAA-CAC-A-CA-TAT-T---A------catcatcattaatagagtatattttgaaggttttatcattctattgtgtcattgt