lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111 1111111111111111111111111 222222222222222222222222 222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222
lowQualScore : 11 2 22 222 22 1 11 3333333333333333 111 1 1 111111 11 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 8888888888888888 1 1111 1 7777777777777777777777777777777777777777 11 1111 22222222 222 1 22222 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 44444444 11 11 33333 2 444444444 2222222222222222222222222 444444 1111 888888888888888888888888 1 1 1 22 1 000000000000 111 11 1 9999999999999 1111 11 222222 22 11 2 11 333333333333 11 111 11 222222 1 111 1 333333 1 2222 3333333333333333 111 111 3333333333333 111111 2 222 3333333333333333333 1111 1111 1 1 11 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 111 1 111 3333333 1 444444444444444444444444 1 444444444 33333 111 333333333 1 1 1111111111111111111111111111111111111111111 1111 11 1 1 333333 11 1
lowQualScore : 2 2 88 0 77 3 000 33 3 2 4 5 0 1 4 11 88 0 3 0 6 3 7777777777777777 2 555 0 5 888 6 444444 2 5 11 2 222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 777 6 4444444444444444 5 55 6 1 4 9 11 2222 6 3 3333333333333333333333333333333333333333 88 999 3333 22222222 555 5 44444 2 4 6 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 3 2 1 55555555 77 4 33 3 00 88888 3 2 6 7 2 000000000 5555555555555555555555555 000000 6 8888 6 6 6 6 6 000000000000000000000000 7 6 5 6 5 11 6 5 555555555555 999 77 3 8 0 7777777777777 3333 8 3 11 333333 8 11 2 11 8 0 5 00 3 8 222222222222 5 3 11 5 999 8 55 111111 8 8 8 444 3 0 222222 3 0 0000 9999 6666666666666666 444 0 111 6666666666666 6 666666 6 6 333 6666666666666666666 1111 7777 1 6 2 3 3 11 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 8 2 5 666 2 0 111 2222222 66 888 4 0 333333333333333333333333 2 0 444444444 11111 6 3 333 6 444444444 8 0 0 0 3333333333333333333333333333333333333333333 4 1111 66 0 7 444444 22 0
lowQualScore : . . .. . .. . ... .. . . . . . . . .. .. . . . . . ................ . ... . . ... . ...... . . .. . ... ....................................................................................................... ... . ................ . .. . . . . .. .... . . ........................................ .. ... .... ........ ... . ..... . . . ................................................................................................................................................................................. . . . . ........ .. . .. . .. ..... . . . . . ......... ......................... ...... . .... . . . . . ........................ . . . . . .. . . ............ ... .. . . . ............. .... . . .. ...... . .. . .. . . . .. . . ............ . . .. . ... . .. ...... . . . ... . . ...... . . .... .... ................ ... . ... ............. . ...... . . ... ................... .... .... . . . . . .. ......................................................................................... . . . . ... . . ... ....... .. ... . . ........................ . . ......... ..... . . ... . ......... . . . . ........................................... . .... .. . . ...... .. .
lowQualScore : 5 5 55 0 55 0 555 00 0 5 0 5 7 0 0 77 33 7 7 7 7 7 7777777777777777 5 000 0 0 888 8 222222 5 0 00 5 888 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 0000000000000000 0 55 0 0 7 0 77 7777 7 3 0000000000000000000000000000000000000000 33 777 7777 77777777 000 0 00000 5 0 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 5 5 00000000 00 0 00 0 00 55555 0 5 0 5 5 000000000 5555555555555555555555555 000000 0 0000 0 0 0 0 0 000000000000000000000000 0 0 0 0 0 00 0 0 000000000000 000 22 8 0 8 6666666666666 0000 0 2 00 000000 0 44 2 00 0 8 4 88 2 0 444444444444 0 2 00 2 222 2 88 666666 0 0 2 222 0 5 888888 2 0 5555 4444 4444444444444444 000 8 777 3333333333333 7 222222 7 7 333 0000000000000000000 2222 7777 0 0 5 3 3 55 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 8 2 0 222 2 0 000 5555555 88 000 2 0 222222222222222222222222 2 0 555555555 00000 0 0 000 5 888888888 2 0 2 0 0000000000000000000000000000000000000000000 0 0000 00 0 0 888888 55 0
consensus : AAGGTCTNCTCGCCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGGNCTCTAAGCTCCAAGGAANGCACATAGNTTNAAGTCCCTNCAGGCCCNGATCCGGCGGGAGATCAGNAANNTGCANAACCAGCGGTGGNAAAAGAAGGCTGNAG-GGTCCAAGGCT-T-CGCAGACTNC-AACAAC-TCCAAGNNGCTNTTCAGCGCNATNAAGGCCATNTATGGTC-CTTCACGANCAGGNACNGTCAAAACCTCTGTTGCT-TCNGCNGACGGTACC-TGCTCGTCATTCGTCAAGGACNAAGAGGNAGNCATTTCCGACCNAGGGA-TTGGAAGGAGCACTTCAGCCAGNCGCTTAACCGNCCATCAACT-AGTCGNNCGGTCTGCGCTCGAGCGGATACCCCAACAGCCAG-TC-AC-AAA--GAG---CTAGATGA-CC-TCCANC---C-G-TG--GATGANCTCGAGAAG--GCAGTNAAGCAGATGAANTGTGGCAAGGNCCCNGGNANGGATGG-ANTNCCCGCAGAANTNTNCAGGGCGCTGGGNGACANAGNCTCNCANGCNGGCTTTCCATGGACGTCCTCNNCANCATNTGGGAGGAGGNTG--ATGTATACAGGATTTCTTGGATGTCACCATAGTCGCGCCGTACAAGAACNAGTGGCTGAAANCTGACACACAGACTGACAGTGGGAACTACAGGGGCATNTCNCTGCTTTCNATNGCCNGNAAAATCCNNGCNCGCATCATCCNNAACAGGCTNACTNCGTCCATTGCCNGAGNAGAACCTCCCNGGGTCNCAGTGCCAGCTTCCGCCCCCAGTTGAAAGGCCCACCATTCACATGATCTTCACCGTGAGGCAAATACAAGAGAAGTGATTCGAGC------T---CTACT----AG---TCATAGACCGGACGAAGGCGTTCGATACGGTCAACAGAGAAGCACTGTGGGTCATTC--GGGAAGCTCGGATGCCCTGTAAAGTTTA-CAACACTC--A--CTCATCA--GGC-TGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGG-CGAGCCCTC-AGAGGGCT-TTGCCAT-CTCNA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCC-CCAGTGCTGTTCAACCTCTTCTTCA---CCCA-AGTACTG-CTTCA--CGCTATGANAGACCTAG-ACN-TTGGTGTCCGCA-TCAGCTAACGG--CTGGACGG---CTCACTGTTCGACCT---GC-GGC--------GTCTT-ACN-GCCAAGAC-AAA-ACCAT---GAAAA-G----GCTCATACTT--GAAGCC-C--TA---TTTGCCGACGACTGTGCNCTGATGGCCCAC-AG-GAG-AACC----ACC------TGTAAGTC--------A---------CG--TT------TTCC--G------AAGCGT----CCAGGN---TGCNTTGGTNTCACAATCAGTCT-C-GGG-AA-A-CAGA-------GGTNCTCCTCCAGCCCG-CACCTGAC-AGCA----C-C--CC---CCAGCCA-CCGTGC--TCACCATCGACGGNGTCCAGNTGAANAACGTNGACG--CAGTTTTAAGTA-CCTGGGCAGC-ACAATCTCATCTCC------NGCAG--G-G-----CAC-------TGGNCAAAGAGATTNTNNCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-NGGCA-GACTC
Reference ( gi|2 ) : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGAGCTCTAAGC-CCAA--AATGCACATA-TTTTAAGTCCCTGCAGGCCTTGATTCGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGT-AACAAC-TCGAAACAGCTTTTCACTTCCCTCAAGACAGTCTATGGGC-CTTCATAATCTGGCTCTGTC----C---TGTTGCTATCTGTAGACGGAGCCATGCTCATCATTCATCAAGGACAA---GGCTATCAT---CAA-CGAGAGATTT--ATGGAGCACTTCAGCCAACTTCTCAACCGCCCGTC--CTTGGTAGACCAGTTTGTACTTGAACGAATCCCTCAACAGCCAG-TC-ACTGAT--GAG---CTAGATAA-CC-TTCACC---C-A-TG--GATGAACTCAAGAAG--GCCACCAAGCAGATGGCATGTGGGAAAGTTTCGGGCAAGGACGGCAAT-CCAGCGGAGGTGTACAAAACACTTAGCAACAAGGCCTTACATGCA----TTCCA--GA-GTCTTGACCAATGTTTGGGAAGAGGAAGAAATGCCTGC-TGATATCTAAGACGCAGCGATAGTCGCCCTGAACATGAAGTAG-GGCT----ATTG---CACAAACT----GTTGAAACTATAGGGGTATATCACTGCTTTCCATTGC--------TCCTTGCTCGTATCATCCTGAACAGGCTAATCTCATCCGCTA-CAGAGGAAAATTTCACCGAGTCTTGATG-C-GCTTCCG-CTCCAGTCGAA--GCGCA--GTGGACATGATCTTCTTTGGAAGACAGGTCCAGGAGAAATAACTTGAGCAAAACATGAACCACTGCCGAGTCTTCAAAGACTGCACAAAGGCTTTAAACACTGTCAACAGAGAAG------------TTC--GGGATGCTCGGATGCCCTGAAAAGTTCA-CAACACTCTGAGTCTCATCA--GGC-TGTTCCATGAT--GACATGAC------GG-GTGCGGTTCTGTCTGA--CGG-TGAGCCATC-GGAGGGCT-TTGCAAT-CTCAA---ATGGAGTGAA--ACAAGGTTGTGTGCTTGTC-CCCGTGCTGTTCAATTTCTTTTTCA---ACCA-AGTACTG-CTGCA--CGTTGTGCCAGGCCTAG-ACC-TAGGTGTCCACA-TCACATACCGG--CTGGACGG---CTCACTGTTTGACCT---GC-TGC--------ATCTT-ACT-GTGAAGAC-AAA-ACCAT---GAAAA-G----GTTCATACTT--CAAGCC-C--TA---CTTGCCGGTGACTGTGCCCTGATGGCCCAC-AG-GAG-GATC----ACA------TGTGAA-C--------A---------CA--TT------TTCT--G------AAGCAT----CCAAGA---TG-ACCGGTCTGACAATTATTCT-C-GAG-AA-A-CAGA-------AGTCCTCCTTCAGCCCG-CACCTGAC-AGTA----C-T--CC---CCAGTCA-CCATGC-TTCGCCATCGACGACACACGGATGAAGAACGTCGATG--CA--TTCAAGTA-CTTGGGCAGC-AC-----C------------AGCA-----------CAC-------TGGACAAAGAGATTGCAGCCA-AGATCCA-GATAGCCAG--TC--AAGCACT-GGGCA-AACTC
gi|9 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGAGCTCTAAGC-CCAA--AATGCACATA-TTTTAAGTCCCTGCAGGCCTTGATTCGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGT-AACAAC-TCGAAACAGCTTTTCACTTCCCTCAAGACAGTCTATGGGC-CTTCA
gi|3 : gccatgtcactaaagctatgcgaggaagagaagctgggcagatcaccgtctgatccgctgtactctaaaactgcacattgttccatgtcactcaagacgcaaaacgcttgtccgcacaccctttaaaacaaccagacttcaacagcctctctacctacataagttcctggacaacatggacgaggatttggccgcaaatggaccactgtctggaaatccagaagaaagatggatgcagttcagggaagtggttacagagacaaacaagtcagttctcggtcccaagggtcggaaacgccaggaactgCTCCTTGCCAGAAAGAACAAAGCATTCATGGAGTGGTAGAATGATCTAGTCTCT--GCTCCAAGGAAGG---ATAGGTTGAAATCCCTCCAGACTCAGA-CCAACGCGAGATTAGGAGGGTGCAAAACCAGTGGTGGCGGAAGAAG--TGCAGCGGGC---GGCT-------GA-TATCAACAACATC-AAGCAGTTCTTCAGCTCCATCAAGTCCATCTTTGGCC-CTTCAGAAACAGACACCG-CAAAAC---TGTTG---TCAGCAGACGGTACC--GCTC-----TGGTCAAGGACTA---GACAGGCATTTCCAACCG------TTGGAAGGAGCACTTCAGTCAAACGCTTA----CTCATC-----AGTCGCGCAGTCTGCACTCGACCAGATAGCCCAGCAGCCAATTC-A---ATCCAAA---CTAGATGA-TCATCCAACTATC-G-TG--GAT--ACT-GAGAAA--ACAGTCAAGTAGATGAATTGTGGCAAGGACCCTGACATAGATGG-AGTACCCGCAGAATTGTACAGAGTGCT---CGACAAAGACTCAC-TGCAGGCTTTCCATGAA-GTTCTTACTAACATCT----AAAGGTTG--ATGTATACAGGATTTCTTGGATGTCACCATAGTCGCACCGTACAAGAA-CAGTGGCT----CT-------CAAACTGACAGTGGGAACTACAGAGGCATTTCACTGCTTTCAATAGCCGGCAAAATCCGAGCACGCATCATCCCGAACAAGCTCACTACGTCCA-TACCCGAACAGAACCTCCCAGAATCCCAATA-CAGTTTCTG--TCC---TGAAAGGCCCACCATTCACATGATCTTCACCGTGAGGCAAATACAAGAGAAGTGATTCGAGC------T---CTACT----AG---TCATAGACCGGACGAAGGCGTTCGATACGGTCAACAGAGAAGCACTGTGGGTCATTCTTGGTAAACTAGGCTGCTCGAGGAAGTTCATCAA-ACTTATAAT---AT------C-TGTTTCATAAT--GACCCGAC------AG-GAG-AGTACTGTCAGA--TGGATG-TCCTTC-GGAG----------------AA---AT----T-AA--ATAAGGTTGTGT-CCTGTG-TCAGTGCTGTTCAACCTCTTTTTCA---CCCA-GGTGTTG-CTACA--TGTT
gi|1 : agaaatggaactagtccaaggacattgtgaagtagtcagccgaaacagtactgggaccaaacaatcgcacatatcaagactagttcaatgaaaatgacagcgctgtcgaaaacCAGCGGGAGTTCCGCAACATGCAGAATCAGTGGTGGAAAAGAAAGGCTGAAG---TGCAA--CTATATGCAGACTCC-AACAAC-TCCAAGATGCTGTTCAGTGCAATAAAGGCCATATATGTTC-CCTCA
gi|12 : taaccactgggagtcattagtcacaaacctgcacataggcggctttgggaccagtggtcgtcgtttcttcgaaccaagggcagcggaaaacttcggcagtatcctaggcgactgagcagccttttcaggagcgcactgctcaccctaataaaggagggggctagaaaaggtgccccaaaaaaatgcctgccctacccaatctggccagctaaccgcggctggcaagatctacccatcctgcggtcgaccaaaacagaaaaagaaaatcattgttggaacatggaacgtacgtaaccttttggatcgagacgacgttgcaagacttcggagaaggacggctcttgtagctaaagaactggcaaggtataacattgacattgccgcaatcagtgaaactcggcagtgagtgaatataccttcttctggaagggtaaagcccagaacgaagacaaaatacatggtattgactctgccatcaagacaaaccaaaaaaaaaaacacaaaaaaaaaacaacctccgacagattccgagcctccccactgacaccaacgagaaactcatgaagcttcgtatccctatcagcaacaaccgcttctttaccatcattaccgtctatgccccgactctgactagcacagaggaagtgaaagagcagttttatgttgacctagatgctctgttgcgtactacacccatcaatgacaagcttttagtgttgggtgatttcaacgctagggacagcaaccagtggaaaggggtgatgggaaagcatgggacagggaaaatgaacgggaccgcttgtttctactgagtaaatgtgcccaatacgacttgctgctgaccaatacaaccttcaggcaggttgataagttcaagagaattggatgaacccgcgatctaaacagtggcatcttattgactatatcatcacctgccaacgtgacagcagagatgtcatcttcacaagggcaatgcgaggcgcagattgctggactgatcacagacatgtccgagcaaaactcaacctctgcatcgtcccacaccaccggagacgcccaaagctaattagactcgcattcaacacagcatgccccctctctagcagacaccgccaagatttccaaaccagcagaagaccactcacaggctcgccaaaagaaaagtggagttaattcaaggaagtggtcaccgaaacagccacatcagtattaggcccaaagaagaggtctcaccaagattggtttgacgaaaatgatgcatcagtgcattcactgttagacgagaagaggaaagcttttattgattggcaaaaccacccaaactgctcctccaggcgtgacagatacaaagactacaaagccagaacaGCAGACTCC-AACAAC-TCCAAGATGCTGCTCAGAGCAAAAAAGGCCATATATGGTTTCTCCACG-TCAGGAACAGTC----CCTCTGT-GCT--CTGTTGACGG-----TGCT-GTCAT-CATCAAGGACAAAGAGGGAATCAT---TG--CTAGGGA-------AGAGCACTTCAGCCAGCTACTTAACCGGCCATCAACT--GTCGACCGGGCTGTGCTACAGCAGATACC---ACAG-AAG-TCTACGAAA--GAGGACCT---TGA-CC-TTCCCC---CTACTGAAGACGAGGTCA--GAGCTGCAATAAAACAGATGAAATGTGGCAAAGCCCCAGGGAAGGATGG-ACTCCCCGCAGAAATCTTCAAGGCTCTGGGAGACATAGCTTTTCAAGCC----TTCTAT-GACGTCCTCTGCACTATATGGGAGGAAGAacgtcaggaacagcccctctgtattctgctga
gi|18 : atCAGTCTGCACTTGAGCGAATTCCTCAACAGCCAG-TC-ATCAAA--GAG---ATAGAGAACCC-TCCATC---T-A-TG--GGTGACCTCAAAAAG--GTC
gi|6 : CCTGTACAAGAACAAA-GGCTGAAAACTGACACACAGACT----G--AAAACTATAGGAGTATATCCTTACTTTCCATCGCCTGGAAAATCCTTGCTCGTATCATCCGCAACAGGCTAATTTCATCTATTG-CAGAGGAAAACTTC-CCGGGTCGCAGTGCC-GCTTCCGCCCCCAGT
gi|4 : TC--AGGAAGCTCGGATGCCCTGTAAAGTTTA-CAACACTC--------ATCA--GGT-TGTTC-ATGAT--AACATGAC------GG-ATGATGTTCTGTCCGA--CGG-TGAGCC-TC-AGAGGGCT-TTGCCAT-CTCCA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCAGTGCTGTTCAACCTCTTCTTTA---CCCA-AGTACTG-CTTCA--GGCTATGATGAACCTAG-ACA-TTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGACCT---GC-GGC--------GTCTT-AGA-GCGAAGAC-AAATACCAT---GAAAA-A----GCTCATACGT--GAAGCC-C--TA---TTTGCCGATGACTGTGCACTGATGGTCCACAAG-GAG-AATC----AT-------CCTAAT-C--------A---------GA--CT------AT-T--GGGGGAAAATTAT----CC--GA---TGCATAGGTCTGGCAATTAGTCT-CGGAA-AA-A-CAGC-------AGTCCTCCTTCAGCTTG-AACCTGAC-AGTA----A-C--CC---CCAGCCA-CCATGC-AACACCATCGACG-CACACAGCTGAAGAACGTCGATG--CA--TTGAAGTA-CTTTGGCAGC-GC-----CATCTCCAGCGATAGCA-----------CTC-------TGGACAAAGAGATTGTAGCCA-GGATCCA-GAAAGCCAG---CAAAAGCACA-CGGCA-ACCTCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgagaaacattgtggatcattctcaggaacctcagatgccctgcaaagtttacaacattcatcggactgttccgtgatgatatgacgggcgaagttctgtctgacagcaagccctcagagggctttgccatctccaattgagtgacgcaaagctgtgtgattgctcccgtactgtttaattcttctttacccaagtactgcttcacgctgtgagagacctagaccatggtttctacatcagttaccagcttgacggctcatagtttaacctgcggtgtcttatttccaagatgaagaccatgcaaaggctcatacttgaagccctatttgtcgatgactgcgcactgatggtcctcaaggagaatcatctacagcctattgtagacaagttttccgaagcatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagcctttgacagtaaccctagtctcc
gi|6 : ccTC--AGGAACCTCAGATGCCCTGCAAAGTTTA-CAACATTC--------ATCG--GAC-TGTTCCGTGAT--GATATGAC------GG-GCGAAGTTCTGTCTGA--CAG-CAAGCCCTC-AGAGGGCT-TTGCCAT-CTCCA---ATTGAGTGAC--GCAAAGCTGTGTGATTGCT-CCCGTACTGTTTAA-TTCTTCTTTA---CCCA-AGTACTG-CTTCA--CGCTGTGAGAGACCTAG-ACC-ATGGTTTCTACA-TCAGTTACCAG--CTTGACGG---CTCATAGTTTAACCT---GC-GGT--------GTCTT-ATT-TCCAAGATGAAG-ACCAT---GCAAA-G----GCTCATACTT--GAAGCC-C--TA---TTTGTCGATGACTGCGCACTGATGGTCCTCAAG-GAG-AATCATCTACAGCCTATTGTAGA-C--------A---------AG--TT------TTCC--G------AAGCAT----Ccacaatcaaagtcttgcagcataaggacattctcctcagaaccaaactaaaggtatgcaatgctgtcgtcctctcgttactgctctatggctgtgaaaccggaccctctaccgcagacatatgaagaagatggaacaattccatacgcactctttgtgtgcaatcatgcaaatacgttagcaggaccgcatcactaaccaagaaatcctggacagagcggataccactactagcgttgaagccaaaatcatccaagctcaacttcgataatctggccatgttatccgtatggaggagtttagaattccatgaaagtttttctatggggagctagagtctggcagtgtcgtccgaaaaaagagtataaagacaacctcaaaaccagcctcaaatggacaggccttgaacctaggcagatcgaatctg
gi|14 : cctgtacaagaacaaaggctgaaaactgacacacagactgaaaactataggagtatatccttactttccatcgcctggaaaatccttgctcgtatcatccgcaacaggctaatttcatctattgcagaggaaaacttcccgggtcgcagtgccgcttccgcccccagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgagaaacattgtggatcattcGCTCGGATGCCCTGTAAAGTTTA-CAA-A--------CTCATCA--GGT-TGTT-CATGAT--AACATGA-------GG-ATGATGTCTTGTCCGA--CGG-TGAGCC-TCAAGAGGGCT-TTGCCAT-TCC-----ATGGAGTGAA--ACAAGGCTGCGTGCTTG-C-TCAGTGATGTTCAACCTCTTCTT-----ATCACAGTACTG-CT-CG--AGCTATGAT-GAACTAGTACA-TTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGA--T---GCGGGC--------GT-TT-AGA-GCGAAGAC-AAATACCAT---GAAAA------GCTCATACGT--GAAGCC-C--TA---TTTGCCGATGACTGGTCACTGATGGTCTTC-GG-TAA-GTTC----GTA------TGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagcctttgacagtaaccctagtctcc
gi|8 : aAAATTCA-C--CAC----AGGCTCATTAACGGCCTCTTCCATGACAGGACATGACTGGACAGGTGTGCGGTTTTGT-TGATACGG-AGAACACTT-AAACACCTGTTGTTATACTCATTTTACGGAGTAGAGGAGAAGGATGC-TGTTTGCCGCCTGTGCTCTTCAACCGTTCTATCACGGAGCA-GGTTCTAACTCCATGCGCT-TGAAAGATC--G-GCCGTAGGTTTACGTAATCAGTTAACTGATCTGGAGGGATTCTT-CTTTTTGACCTCGCGC-TGCGTGCGATTATCTTCACTTGTCCGGAC-AAAGACCTTCGAGAAAATG----ATGCGT--TTGCCGAGCG-CATTAAAGTTTGCAGACGACTGTGCCCTCATAGCACAC-AG-AAGAAACC----ACC------TTTGAGTC--------AATCGTTGACCG--TT------TTC---G------CAGCATGCGGCCAGGAGGCTGTATTGGTATCACAATCAGTCTGC-GGGAAA-A-CAGAGGTGTAGGGTGTTCAGCCAGCCCGACAC--AAC-AACATAGCC-T--CTCTGCCAGTCA-TC------TAACCATCGACGGAGTCCAGATGAAT--TGTTG-TGGACAGTTTTAAATACCTTGGGCAGCTACAATCTC------------CGCAATGATGGAAATAAT-------TGGTCAAAGAGATTTTTTCCAGGGATCCATGAAAGCCAGCTTA--AAGCACTCGGGCAGAATTC
gi|5 : TGTCCGC-------TATCGC--CTGGACGG---TTCATTGTTCGACCT---TC-GCC--------GTCTC-ACA-ACTAAAAC-AGA-GACAT---TAAAA-AAACTGCTCAT-CT----AAGTT-T--TG---TTTGCTGATGACTGTGCCCTGATGGCCCAC-AAAGAG-TACA----ACC------TGCAGA-CGATCGTCGA---------TAAGTT------CTCC--G------TGGCGA----CCAAGC---TG-TTTGGTCTTACAATCAGTGT-G-GGG-AAGA-CCGA-------AGTTCTCCTCCAGCCTG-CAC-TGATGAGCG----C-C--CC---ACAGCCG-CCGTGCATTTACCATCGACGATGTTCAGCTGAAGAACGTAGACG--CC--TTTAAGTA-CCTATGAAGT-AC-----CATCTTT------AGCA------------ACGGCCTCTTAGATTAGGAAATAGCAGCCC-GAATCCT-GAAAGCCAG--TC--CGGCAAT-GGAAA-GACT
gi|11 : acttaaacattgatataCTTTTTGACCT---CC-GCC--------GTCTC-ACT-GTCCGGAC-AAAGACCTTCGAGAAAA-T----G---AT-CTT--GGAGGCAT--TG---TTTGCAGACGACTGTGCCCTCATAGCACAC-AGAGAA-AACC----ACC------TGCAAGTC--------AT--------CG--TTGACCGGTTCGCAG------ATGCGG----CCAGAC---TG-TTTGGTATCACAATCAGTCT-C-GGG-AA-AACAGA-------GGTAGT---TCAGCCAG-CCCCGAAC-ACAA----CATGGCC---CCAGCCAGTCAT-----CACCATCGACGGAGTCCAGATGAATTGTGTGGA----CAGTTTTAAATA-CCTGGGCAGC-ACAATCTC------------CGCAGATGGAT----CAA-------TGGTCAAAGAGATTTTTTCCA-GGATCCA-GAAAGCCAG--CT--AAGCACT-CGGCA-GATTCttgctctggaccagagtgttgaaacacaaagacatccgattgtccattaaactcaaaagtgtacaatgcagttgtggtctcttcgctgctgtacggatgtgagacatggaccctctatcgcaagtacatcaagcttttagagcaactccacatgcactctctccgccacatcttgcatatttactggtaggacagaaattccatcctggaggtacacgacacagcggaccctacaaacattgaggcaaaggtgctttgggcacagttacgctggacttgccacatgagccacataaatgattccaggatatccagacaactgttgggctcaacagttgacgggtagtcgcagtcgggtccgaccaaagaagaggtacaaggacaatggcaaggcctacttgtaagtagaccgactttccaccga
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): GTTCACCCGAACAACAAAGACTGCTACAGCAAACCAGGCGGAGGAAATCCATCGAGGGTTCAACGGCTGGTGAGGCGCTGCAGCAAGGCATTAATGAATGCTTAGGGTATTATAGAACACAAAAGACATCATGACCACCCACTGCGGCCAAGGAGGTTACCAGCCGTGACGATTCTCTGTACCAATTGATCAGGGCTTCTGCAGCAGAGAGAGTGGGGTCCCTGTGCAACGGCTTTTCCACTTTAATATCCTTCTCACACAGGATGCGTTGTACGTTCTATAAAGGTCCTGTGGCGACGGGGGATTGGCGAAAGCAACAGGTGGAGGTGACCACTGGGAGTTGTAGTCAGGAACCTGCACGTGGACAGATGTGGTCGCCCCTTCTCTGTACTCAGGGCAGCAGAGAAGTCCGGTAACATCTTTAGGATAGCACTGCTCACCCTAGTAAGGGAGGGACCTAGAAAAGGTGGTCTAAACATTGCCTGTCCTACATTATTTGGCCAATAAGCCGTGGCTGACAGATCTTCCATTCATGCACATGCGGTCGAAGCCAAAGAAGAATAAGGAAACTCTTATGAGGAGCATGGAATGTTCGTACACTTATGGGGCCGAAAACATCACAACAAGACCCCAAAGTAGAACAGTGTATGTTCACAGCAAGACCCCAAAATAGAACAGTAGACACT
Unaligned ( gi|10 ): CTCACTCGAACAACTTGAAAGACTGCTACGGCAGCCCAGGCGGAAGAACCCCAATATCTGGGTCCAACGACTGGGAAGGCGATGCAGCAAGACATTGTGGAATGCTCAGGGCGTAACNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCGTGACAGGAGTATAAAAGACCGCCACGGGCCATCCACTGCAGCCAGAAGAGGTATCAGGCTAATGGTTCTCTTTGCCATTGGGTCAAGGTTTCTTCTGCCGAGAGAGTGGGATTGCCCCCGTGCAACGGTTTCACCTTAATCAAAATCACGCCACAGGTGTCTATAGGACTCAGCTTTCGACCACAATAACGAAGTCTGTGGCAATGGGGGAGTGACAAAGATGGCAGGTGGGAGTAAACACAGGAGTCATTAGTTCACAAGGCCTGCACGTAGGCGCCTTGGACCAGAGGTCGTCGTTTTTCTTTGAACCCAGAG
Unaligned ( gi|13 ): TAATGCTGTTGTCATCTCGTCACTGCTCCATGGCTGTGAAACCTGGACCTTCTACCGCACACACATCAAGCAGCTGCAGAACAGTTCCACACGCGCGCTCTGCGAGCAATCATACGAATACGTTGGCAAGACCAAGTAGTCCTGGACAGAGCGGACACCACTAGCGTTGAAACCAACACCATCCAAGCTCAGTTTTGATGGTCAGTCCACGTTATCCGCATAGAGGAATTCAGAATTCCACGGCAGATTTTCTATGAGTATTTAGCGTCCAGCAGACGCAAAAAGAGGTATAAAGACAACCTCAAAGTCAACAATGAACAATCCCTCAACCTAGGCAGCTAGAATCTGCA
Unaligned ( gi|15 ): ACAGAGGATCCAAGCTCCACCAGCCCGAAACACAACCAGCCAGCCCAGTCACTCGCCAATCGACGGAAGTCCAGCTGAAATAGTCCGTGGAATTTTAAATTGCCACATCTCTCCGCAGATGGATCACTGGAAAAAAGAGATCATTCCAGATCCAGAAAGCAACAAAGATCGGCCAGAGTGCAACAGTCCTACAGCAGATAGGAATCATGCTTGCGACAAGCTGAAGATAATACA
Unaligned ( gi|16 ): TATGCCAGACTCCAATAACACCAAGATGGCTTTGCTTTTCAGTGCAAATAAAGGTCATATTACCGGTTCCCTCAACGTCATGTCACAGCTCCTCTGTGCCTCTGCTGACGGTGCTGCCATCATCAA
Unaligned ( gi|17 ): CCAGGATCACAGAAGCCAAACAAAGCTATCCCAGAGTGAACAGTTTCCTCAGGAGATAGGAAATCATGCTTGCGACAAAGGCTAAGATATACATGTC
Unaligned ( gi|19 ): CTCTCTCACTCTATATGGCGTGTAGACATGGACCCATCAAAACTGGAGCAATTCCACA
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1 22222 22 33 111 3 2222 111111 22222 555555555 222222 33333 111 333 88888888888888888888 555555 1 1 33333333333333333 11 1 33333333 11 11 1 1 11 44444 33333 22 11 1 2222 77777777777 444444 1111 111111 1 222 22 11 11 8888888888888888888 333 22 333333333333333 111111 11111 1111 1 111 11111 111 111111 1111 2 222 1111111 111 2 77777777777777777777777777777777777777777777777 1111 1111 22 1 3333333 11 1111111 111111 22222 1111111 333333 222222222222222222222222222222222222 222222
lowQualScore : 1 0 33 0 00000 33 1 2 2 22 1 3 1 1 777 1 22 1 1 2 1 0 9 2 2 3333 1 22 999999 1 77 1 6 1 1 6 6 88 6 6 22222 44 1 3 666666666 888888 1 1 55555 666 7 0 1 777 2222 33333333333333333333 6666 7 1 333333 22 2 2 4 0 3 0 2 0 55555555555555555 3 3 33 0 1 22222222 2 1 33 3 33 0 1 1 0 1 1 1 1 3 1 4 1 1 1 11 3 88 1 1 1 11 88 44444 22222 555 11 1 999 55 77 3 88 4 4 2 2 0 0 4444 22222222222 0 111111 0 0 0 1 1 1 1 6666 22 1 0 22 1 0 1 0 888888 1 0 0 4 0 1 0 888 11 88 2 77 55 4 3 3 6666666666666666666 4 555 2 2 2 2 999 3 77 4 6 666666666666666 6 1 6 99 999999 6 7 7 99 6 7 1 6 1 6 88888 2 1 99 88 3 1 6 99 4444 6 0 000 6 44 6 1 1 77777 3 77777 2 111 666666 888 2222 5 66 3 5 2 000 7777777 7 8888888 8888 000 1 1 0 6 6 5 44444444444444444444444444444444444444444444444 0 4444 22 5555 44 1 3 8 8 6 3 6 1 5555555 00 6 7777777 6 3 222222 999 88888 6 77 1 1 9999999 1 555555 6 2 6 555555555555555555555555555555555555 1 6 1 88 6 1 6 444444 99
lowQualScore : . . .. . ..... .. . . . .. . . . . ... . .. . . . . . . . . .... . .. ...... . .. . . . . . . .. . . ..... .. . . ......... ...... . . ..... ... . . . ... .... .................... .... . . ...... .. . . . . . . . . ................. . . .. . . ........ . . .. . .. . . . . . . . . . . . . . . .. . .. . . . .. .. ..... ..... ... .. . ... .. .. . .. . . . . . . .... ........... . ...... . . . . . . . .... .. . . .. . . . . ...... . . . . . . . ... .. .. . .. .. . . . ................... . ... . . . . ... . .. . . ............... . . . .. ...... . . . .. . . . . . . ..... . . .. .. . . . .. .... . . ... . .. . . . ..... . ..... . ... ...... ... .... . .. . . . ... ....... . ....... .... ... . . . . . . ............................................... . .... .. .... .. . . . . . . . . ....... .. . ....... . . ...... ... ..... . .. . . ....... . ...... . . . .................................... . . . .. . . . ...... ..
lowQualScore : 0 7 00 0 22222 88 0 5 5 00 0 2 0 0 888 0 00 0 0 5 0 0 2 5 5 5555 0 00 222222 0 33 0 7 0 0 7 7 22 7 7 77777 88 0 8 000000000 000000 0 0 00000 222 3 7 0 333 3333 00000000000000000000 0000 3 0 777777 00 0 0 2 2 5 5 5 0 00000000000000000 2 2 88 0 0 88888888 5 0 00 2 88 7 0 0 7 0 0 0 0 3 0 0 0 0 0 33 7 77 0 0 0 77 33 77777 00000 777 77 0 333 00 55 0 00 0 0 5 5 5 7 0000 00000000000 7 777777 7 7 7 0 0 0 0 3333 00 0 7 00 0 7 0 7 333333 0 7 7 0 7 0 7 777 77 00 5 55 55 0 0 0 5555555555555555555 0 000 5 5 5 5 333 7 55 0 7 000000000000000 7 0 7 22 222222 7 5 8 22 3 8 0 7 0 7 55555 5 0 22 88 3 0 7 22 2222 7 0 222 8 88 7 0 0 00000 3 33333 5 777 444444 666 1111 7 77 0 7 9 000 6666666 1 7777777 1111 000 4 0 0 7 7 2 00000000000000000000000000000000000000000000000 7 2222 22 0000 22 0 2 0 0 7 3 7 0 8888888 00 7 5555555 7 7 000000 333 55555 7 77 0 0 3333333 0 222222 7 5 7 222222222222222222222222222222222222 0 7 0 55 7 0 7 000000 00
consensus : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGAGCT-CTAAGCTCCAAG-AANGCACATA-TTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GGT-C-CTTC-A-CGATCAGGNACNGTCA-A-C--CTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACAA---GGCAATCATT--CGACCGAGGGATT--A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTCA-CT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAA-GAG---CTAGATGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGCT-GGCGACAAAGCCTTACATGCA----TTCCAT-GA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAAC-AG-GGCT----ACTG---CACAAACTGA---T-GAAACTATAGGGGTATATCACTGCTTTCCATCGCC-G-AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTCCC-GAGTCNCGATGCC-GCTTCCGCCCC-AGTCGAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A--CTCATCG-GGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACN-GCGAAGAC-AAA-ACCAT---GAAAAG----GCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAG-GAGAA-CCACCTGCG---------A------GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-GAA-A-CAGAGG-TCC-------TCC-NCCAGCCC-G-NACCTGAC-AGCA---CC-CCCCAGCCA-CCGT-GC--TCGCCA-TCGACGGC-GTCCAGNTGAA-GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-ACA---TC-TCTCCAGC-A--G----GGA---CA--C-TGGACAAA-GAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
Reference ( family-2329 ) : AAGGTCTNCTCGCCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGGNCT-CTAAGCTCCAAGGAANGCACATAGNTTNAAGTCCCTNCAGGCCCNGATC-CGGCGGGAGATCAGNAANNTGCANAACCAGCGGTGGNAAAAGAAGGCTGNAG-GGTCCAAGGCT-T-CGCAGACTNCAACAACTCCAAGNNG------CTNTTCAGCGCNA-TNAAGGCCATNT-AT-GGT-C-CTTC-A-CGANCAGGNACNGTCAAAAC--CTCTGTTGCT-TCNGCNGACGGTACC-TGCTCGTCATTCGTCAAGGACNAAGAGGNAGNCATTTCCGACCNAGGGATTGGAAGGAGCACTTCAGCCAGNCGCTTAACCGNCCATCAACT-AGTCGNNCGGTCTGCGCTCGAGCGGATACCCCAACAGCCAGT-C-A---C-AAA-GAG---CTAGATGA--CC-TCCANC---C----GTGGATGANCTCGAGAAG--GCAGTNAAGCAGATGAANTGTGGCAAGGNCCCNGGNANGGATGG-ANTNCCCGCAGAANTNTNCAGGGCGCTGGGNGACANAGNCTCNCANGCNGGCTTTCCATGGACGTCCTCNNCANCATNTGGGAGGAGGNTGA--TGTATACAGGATTTCTTGGATGTCACCATAGTCGCGCCGTACAAGAACNAGTGGCTGAAANCTGACACACAGACTGACAGTGGGAACTACAGGGGCATNTCNCTGCTTTCNATNGCCNGNAAAATCCNNGCNCGCATCATCCNNAACAGGCTNACTNCGTCCATTGCCNGAGNAGAACCTCCCNGGGTCNCAGTGCCAGCTTCCGCCCCCAGTTGAAAGGCCCACCATTCACATGATCTTCACCGTGAGGCAAATACAAGAGAAGTGATTCGAGC------T---CTACT----AGTCAT---AGACCGGACGAAGGCGTTCGATACGGTCAACAGAGAAGCACTGTGGGTCATTC--GGGAAGCTCGGATGCCCTGTAAAGTTTA-CAACA--CTC--A--CTCATCA-GGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCAGAGGGCT-TTGCCAT-CTCNA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCC-CCAGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTTCA--CGCTATGANAGACCTAG-ACNTTGGTGTCCGCA-TCAGCTAACGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACN-GCCAAGAC-AAA-ACCAT---GAAAAG----GCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCNCTGATGGCCCAC-AG-GAGAA-CCACCTGTA---------A------GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGN---TGCNTTGGTNTCACAATCAGTCT-CGG-GAA-A-CAGAGG-TNC-------TCC-TCCAGCCC-G-CACCTGAC-AGCA---CC-CCCCAGCCA-CCGT-GC--TCACCA-TCGACGGN-GTCCAGNTGAA-NAA---CGTNGACGCAGTTTTAAGTACC-TGGGCAGC-ACAATCTCATCTCCNGC-A--G----GG----CA--C-TGGNCAAA-GAGATTNTNNCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-NGGCAGACTC
gi|1 : AAGAGGAAAGCTTTTATTGATTGGCAAAACCACCCAAACTGCTC--CTCCAGGCGTGACAGATA---CAAAG--ACTACAAAGCCAGAACACAGCGGGAGTTCCGCAACATGCAGAATCAGTGGTGGAAAAGAAAGGCTGAAG-TG--CAA--CTATATGCAGACTCCAACAACTCCAAGATG------CTGTTCAGTGCAA-TAAAGGCCATAT-AT-GTT-C-CCTCAA-CG-TCAGGAACAGCC----C--CTCTGT--AT-TCTGCTGA
gi|11 : taaccactgggagtcattagtcacaaacctgcacataggcggctttgggaccagtggtcgtcgtttcttcgaaccaagggcagcggaaaacttcggcagtatcctaggcgactgagcagccttttcaggagcgcactgctcaccctaataaaggagggggctagaaaaggtgccccaaaaaaatgcctgccctacccaatctggccagctaaccgcggctggcaagatctacccatcctgcggtcgaccaaaacagaaaaagaaaatcattgttggaacatggaacgtacgtaaccttttggatcgagacgacgttgcaagacttcggagaaggacggctcttgtagctaaagaactggcaaggtataacattgacattgccgcaatcagtgaaactcggcagtgagtgaatataccttcttctggaagggtaaagcccagaacgaagacaaaatacatggtattgactctgccatcaagacaaaccaaaaaaaaaaacacaaaaaaaaaacaacctccgacagattccgagcctccccactgacaccaacgagaaactcatgaagcttcgtatccctatcagcaacaaccgcttctttaccatcattaccgtctatgccccgactctgactagcacagaggaagtgaaagagcagttttatgttgacctagatgctctgttgcgtactacacccatcaatgacaagcttttagtgttgggtgatttcaacgctagggacagcaaccagtggaaaggggtgatgggaaagcatgggacagggaaaatgaacgggaccgcttgtttctactgagtaaatgtgcccaatacgacttgctgctgaccaatacaaccttcaggcaggttgataagttcaagagaattggatgaacccgcgatctaaacagtggcatcttattgactatatcatcacctgccaacgtgacagcagagatgtcatcttcacaagggcaatgcgaggcgcagattgctggactgatcacagacatgtccgagcaaaactcaacctctgcatcgtcccacaccaccggagacgcccaaagctaattagactcgcattcaacacagcatgccccctctctagcagacaccgccaagatttccaaaccagcagaagaccactcacaggctcgccaaaagaaaagtggagttaattcaaggaagtggtcaccgaaacagccacatcagtattaggcccaaagaagaggtctcaccaagattggtttgacgaaaatgatgcatcagtgcattcactgttagacgagCTTTTTGACCT------CCG-C-CG----TCTC-ACT-GTCCGGAC-AAAGACCTTCGAGAAAAT----G---AT-C--TTG--GAGGCAT--TG---TTTGCAGACGACTGTGCCCTCATAGCACAC-AGAGAAAA-CCACCTGCA---------A------GTC---AT-CGTTGACCGGTTCGCAG-----ATGCGG----CCAGAC---TG-TTTGGTATCACAATCAGTCT-CGG-GAA-AACAGAGG-TAG-------TTCAGCCAGCCCCG-AAC---AC-AACA---TGGCCCCAGCCA---GT-CA--TCACCA-TCGACGGA-GTCCAGATGAA-TTG---TGTGGAC--AGTTTTAAATACC-TGGGCAGC-ACAATCTC------CGC-A--GAT--GGAT--CA--A-TGGTCAAA-GAGATTTTTTCCA-GGATCCA-GAAAGCCAG--CT--AAGCACT-CGGCAGATTC
gi|12 : ccGCAGACTCCAACAACTCCAAGATG------CTGCTCAGAGCAA-AAAAGGCCATAT-AT-GGT-TTCTCC-A-CG-TCAGGAACAGTC----C--CTCTGT-GCT--CTGTTGACGGT-----GCT-GTCAT-CATCAAGGACAAAGAGGGAATCATT---G--CTAGGGA------AGAGCACTTCAGCCAGCTACTTAACCGGCCATCAACT--GTCGACCGGGCTGTGCTACAGCAGATACC---ACAGA-AGT-CTA---CGAAA-GAGGACCT---TGA--CC-TTCCCC---CTACTGAAGACGAGGTC-AGA-GCTGCAATAAAACAGATGAAATGTGGCAAAGCCCCAGGGAAGGATGG-ACTCCCCGCAGAAATCTTCAAGGCTCTGGGAGACATAGCTTTTCAAGCC----TTCTAT-GACGTCCTCTGCACTATATGGGAGGAAGagagtgaaagtcctgcagcagaaaggaatcatgcttgcgacaaagttgaagatatacagagctgtagtcctct
gi|14 : atAGCTCGGATGCCCTGTAAAGTTTA-CAA---------A--CTCATCA-GGTTGTTC-ATGAT--AACATGA-------GG-ATGATGTCTTGTCCGA--CGGTGAGCCTCAAGAGGGCT-TTGCCAT-TCC-----ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-C-AGTGATGTTCAACCTCTTCT-TATCAC------AGTACTG-CT-CG--AGCTATGAT-GAACTAGTACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGA--T------GCG-GGCG----T-TT-AGA-GCGAAGAC-AAATACCAT---GAAAAG-----CTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGGTCACTGATGGTCa
gi|15 : -A-CAGAGGATCCAAGC---TCC-ACCAGCCC-G-AAAC--AC-A--A---CC-AGCCAGCC--CAGTCAC--TCGCCAATCGACGGAAGTCCAGCTGAA-ATAGTCCGTGGA----ATTTTAAAT----TG--C--C-ACA---TC-TCTCC-GC-A--GAT--GGAT--CA--C-TGGAAAAAAGAGATCATT-CCA-G-ATCCA-GAAAGCttcggtaagttcgtatgt
gi|16 : CAGACTCCAATAACACCAAGATGGCTTTGCTTTTCAGTGCAAATAAAGGTCATATTACCGGTTC-CCTC-AACG-TCA-----TGTCACAGCTCCTCTGT-GCC-TCTGCTGACGGTG-C-TGC-CATCATaacaaagatcggccagagtgcaacagtcctacagcagataggaatcatgcttgcgacaagctgaagataataca
gi|18 : tatgcCAGTCTGCACTTGAGCGAATTCCTCAACAGCCAGT-C-AT--C-AAA-GAG---ATAGA-GAACCC-TCCATC---T----ATGGGTGACCTCAAAAAG--Gcaa
gi|2 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGAGCT-CTAAGC-CCAA--AATGCACATA-TTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GGG-C-CTTC-A-TAATCTGGCTCTGTC---------CTGTTGCTATCTGTAGACGGAGCCATGCTCATCATTCATCAAGGACAA---GGCTATCAT---CAAC-GAGAGATTT-ATGGAGCACTTCAGCCAACTTCTCAACCGCCCGTC--CTTGGTAGACCAGTTTGTACTTGAACGAATCCCTCAACAGCCAGT-C-A---C-TGATGAG---CTAGATAA--CC-TTCACC---C----ATGGATGAACTCAAGAAG--GCCACCAAGCAGATGGCATGTGGGAAAGTTTCGGGCAAGGACGGCAAT-CCAGCGGAGGTGTACAAAACACTTAGCAACAAGGCCTTACATGCA----TTCCA--GA-GTCTTGACCAATGTTTGGGAAGAGGAAGAAATGCCTGC-TGATATCTAAGACGCAGCGATAGTCGCCCTGAACATGAAGTAG-GGCT----ATTG---CACAAACTG----TTGAAACTATAGGGGTATATCACTGCTTTCCATTGC--------TCCTTGCTCGTATCATCCTGAACAGGCTAATCTCATCCGCTAC-AGAGGAAAATTTCACCGAGTCTTGATGC--GCTTCCGCTCC-AGTCGAA--GCGCA--GTGGACATGATCTTCTTTGGAAGACAGGTCCAGGAGAAATAACTTGAGCAAAACATGAACCACTGCCGAGTCTTCAAAGACTGCACAAAGGCTTTAAACACTGTCAACAGAGAAG------------TTC--GGGATGCTCGGATGCCCTGAAAAGTTCA-CAACA--CTCTGAGTCTCATCA-GGCTGTTCCATGAT--GACATGAC------GG-GTGCGGTTCTGTCTGA--CGGTGAGCCATCGGAGGGCT-TTGCAAT-CTCAA---ATGGAGTGAA--ACAAGGTTGTGTGCTTGTC-CCCGTGCTGTTCAATTTCTTTT-T--CAAC---CAAGTACTG-CTGCA--CGTTGTGCCAGGCCTAG-ACCTAGGTGTCCACA-TCACATACCGG--CTGGACGG---CTCACTGTTTGACCT------GCT-G-CA----TCTT-ACT-GTGAAGAC-AAA-ACCAT---GAAAAG----GTTCATAC--TTC--AAGCC-C--TA---CTTGCCGGTGACTGTGCCCTGATGGCCCAC-AG-GAGGA-TCACATGTG---------A------A-C---A--CATT------TTC-T-G-----AAGCAT----CCAAGA---TG-ACCGGTCTGACAATTATTCT-CGA-GAA-A-CAGAAG-TCC-------TCC-TTCAGCCC-G-CACCTGAC-AGTA---CT-CCCCAGTCA-CCAT-GCT-TCGCCA-TCGACGAC-ACACGGATGAA-GAA---CGTCGATGCA--TTCAAGTACT-TGGGCAGC-A-----------CCAGC-A-------------CA--C-TGGACAAA-GAGATTGCAGCCA-AGATCCA-GATAGCCAG--TC--AAGCACT-GGGCAAACTCtc
gi|3 : CTCCTTGCCAGAAAGAACAAAGCATTCATGGAGTGGTAGAATGATCTAGTCT-CT--GCTCCAAGGAAGG---ATAGGTTGAAATCCCTCCAGACTCAGA-C-CAACGCGAGATTAGGAGGGTGCAAAACCAGTGGTGGCGGAAGAAG--TGCAGCGGGC---GGCT-------GATATCAACAACATCAAGCAG------TTCTTCAGCTCCA-TCAAGTCCATCT-TT-GGC-C-CTTC-A-GAAACAGACACCG-CAAAAC-----TGTTG---TCAGCAGACGGTACC--GCTC-----TGGTCAAGGACTA---GACAGGCATTTCCAACCG-----TTGGAAGGAGCACTTCAGTCAAACGCTTA----CTCATCA-----GTCGCGCAGTCTGCACTCGACCAGATAGCCCAGCAGCCAATTC-AATCC-AAA-------CTAGATGA--TCATCCAACTATC----GTGGAT--ACT-GAGAAA--ACAGTCAAGTAGATGAATTGTGGCAAGGACCCTGACATAGATGG-AGTACCCGCAGAATTGTACAGAGTGCT---CGACAAAGACTCAC-TGCAGGCTTTCCATGAA-GTTCTTACTAACATCTAA----AGGTTGA--TGTATACAGGATTTCTTGGATGTCACCATAGTCGCACCGTACAAGAAC-AGTGGCT-----CT------CAAACTGACAGTGGGAACTACAGAGGCATTTCACTGCTTTCAATAGCCGGCAAAATCCGAGCACGCATCATCCCGAACAAGCTCACTACGTCCA-TACCCGAACAGAACCTCCCAGAATCCCAATA-CAGTTTCTGTCC-----TGAAAGGCCCACCATTCACATGATCTTCACCGTGAGGCAAATACAAGAGAAGTGATTCGAGC------T---CTACT----AGTCAT---AGACCGGACGAAGGCGTTCGATACGGTCAACAGAGAAGCACTGTGGGTCATTCTTGGTAAACTAGGCTGCTCGAGGAAGTTCATCAA---------A--CTTATAATATCTGTTTCATAAT--GACCCGAC------AG-GAGA-GTACTGTCAGA--TGGATGTCCTTCGGAG----------------AA---AT----T-AA--ATAAGGTTGTGT-CCTGTG-TCAGTGCTGTTCAACCTCTTTT-T--CACC---CAGGTGTTG-CTACA--TGTT
gi|4 : agaaatggaactagtccaaggacattgtgaagtagtcagccgaaacagtactgggaccaaacaatcgcacatatcaagactagttcaatgaaaatgacagcgctgtcgaaaacTC--AGGAAGCTCGGATGCCCTGTAAAGTTTA-CAACA--CTC--A------TCA-GGTTGTTC-ATGAT--AACATGAC------GG-ATGATGTTCTGTCCGA--CGGTGAGCC-TCAGAGGGCT-TTGCCAT-CTCCA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCAGTGCTGTTCAACCTCTTCT-T--TACC---CAAGTACTG-CTTCA--GGCTATGATGAACCTAG-ACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-AGA-GCGAAGAC-AAATACCAT---GAAAAA----GCTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGTGCACTGATGGTCCACAAG-GAGAA-TCATCC-TA---------A-------TC---A--GACT------ATT-G-GGGGAAAATTAT----CC--GA---TGCATAGGTCTGGCAATTAGTCT-CGGAAAA-A-CAGCAG-TCC-------TCC-TTCAGCTT-G-AACCTGAC-AGTA---AC-CCCCAGCCA-CCAT-GCA-ACACCA-TCGAC-GC-ACACAGCTGAA-GAA---CGTCGATGCA--TTGAAGTACT-TTGGCAGC-GC-----CATCTCCAGCGA--T----AG----CACTC-TGGACAAA-GAGATTGTAGCCA-GGATCCA-GAAAGCCAG---CAAAAGCACA-CGGCAACCTC
gi|5 : ccACTTAA-ACATTGATATATG---TCCGCTATCGC--CTGGACGG---TTCATTGTTCGACCT------TCG-C-CG----TCTC-ACA-ACTAAAAC-AGA-GACAT---TAAAAAAACTGCTCAT-C--T----AAGTT-T--TG---TTTGCTGATGACTGTGCCCTGATGGCCCACAAA-GAGTA-CAACCTGCA---------GACGATCGTCGATA--AGTT------CTC-C-G-----TGGCGA----CCAAGC---TG-TTTGGTCTTACAATCAGTGT-GGG-GAAGA-CCGAAG-TTC-------TCC-TCCAGCCT-G-CA-CTGATGAGCG---CC-CCACAGCCG-CCGT-GCATTTACCA-TCGACGAT-GTTCAGCTGAA-GAA---CGTAGACGC--CTTTAAGTACC-TATGAAGT-AC-----CATCTTTAGC-AACG----GC----CT--CTTAGATTAG-GAAATAGCAGCCC-GAATCCT-GAAAGCCAG--TC--CGGCAAT-GGAAAGACTcacaatcaaagtcttgcagcataaggacattctcctcagaaccaaactaaaggtatgcaatgctgtcgtcctctcgttactgctctatggctgtgaaaccggaccctctaccgcagacatatgaagaagatggaacaattccatacgcactctttgtgtgcaatcatgcaaatacgttagcaggaccgcatcactaaccaagaaatcctggacagagcggataccactactagcgttgaagccaaaatcatccaagctcaacttcgataatctggccatgttatccgtatggaggagtttagaattccatgaaagtttttctatggggagctagagtctggcagtgtcgtccgaaaaaagagtataaagacaacctcaaaaccagcctcaaatggacaggccttgaacctaggcagatcgaatctg
gi|6 : CTGTACAAGAACAAA-GGCTGAAAACTGACACACAGACTGA------AAACTATAGGAGTATATCCTTACTTTCCATCGCCTGGAAAATCCTTGCTCGTATCATCCGCAACAGGCTAATTTCATCTATTG-CAGAGGAAAACTTCCC-GGGTCGCAGTGCC-GCTTCCGCCCCCAGTttgctctggaccagagtgttgaaacacaaagacatccgattgtccattaaactcaaaagtgtacaatgcagttgtggtctcttcgctgctgtacggatgtgagacatggaccctctatcgcaagtacatcaagcttttagagcaactccacatgcactctctccgccacatcttgcatatttactggtaggacagaaattccatcctggaggtacacgacacagcggaccctacaaacattgaggcaaaggtgctttgggcacagttacgctggacttgccacatgagccacataaatgattccaggatatccagacaactgttgggctcaacagttgacgggtagtcgcagtcgggtccgaccaaagaagaggtacaaggacaatggcaaggcctacttgtaagtagaccgactttccaccga
gi|6 : cACCGAGAAACATTGTGGATCATTCTCAGGAACCTCAGATGCCCTGCAAAGTTTA-CAACA--TTC--A------TCG-GACTGTTCCGTGAT--GATATGAC------GG-GCGAAGTTCTGTCTGA--CAGCAAGCCCTCAGAGGGCT-TTGCCAT-CTCCA---ATTGAGTGAC--GCAAAGCTGTGTGATTGCT-CCCGTACTGTTTAA-TTCTTCT-T--TACC---CAAGTACTG-CTTCA--CGCTGTGAGAGACCTAG-ACCATGGTTTCTACA-TCAGTTACCAG--CTTGACGG---CTCATAGTTTAACCT------GCG-G-TG----TCTT-ATT-TCCAAGATGAAG-ACCAT---GCAAAG----GCTCATAC--TTG--AAGCC-C--TA---TTTGTCGATGACTGCGCACTGATGGTCCTCAAG-GAGAA-TCATCTACAGCCTATTGTA------GAC---A--AGTT------TTC-C-G-----AAGCAT----Cannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgagaaacattgtggatcattctcaggaacctcagatgccctgcaaagtttacaacattcatcggactgttccgtgatgatatgacgggcgaagttctgtctgacagcaagccctcagagggctttgccatctccaattgagtgacgcaaagctgtgtgattgctcccgtactgtttaattcttctttacccaagtactgcttcacgctgtgagagacctagaccatggtttctacatcagttaccagcttgacggctcatagtttaacctgcggtgtcttatttccaagatgaagaccatgcaaaggctcatacttgaagccctatttgtcgatgactgcgcactgatggtcctcaaggagaatcatctacagcctattgtagacaagttttccgaagcatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagcctttgacagtaaccctagtctcc
gi|8 : cctgtacaagaacaaaggctgaaaactgacacacagactgaaaactataggagtatatccttactttccatcgcctggaaaatccttgctcgtatcatccgcaacaggctaatttcatctattgcagaggaaaacttcccgggtcgcagtgccgcttccgcccccagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATTCA-CCACAGGCTC--A--TTAA-CG-GCCTCTTCCATGACAGGACATGACTGGACAGGTGTGCGGTTTTGTT-GATACGGAGAACACTTAAACACCTGTTGTTATACTCATTTTACGGAGTAGAGGAGAAGGATGC-TGTTTGCCGCCTGTGCTCTTCAACCG-TTCTAT--CACGGAGCAGGTTCTAACTCCATGCGCT-TGAAAGATC-GG-CCGTAGGTTTACGTAATCAGTTAACTGATCTGGAGGGATTCTT-CTTTTTGACCTCGCGCTGCGTG-CGATTATCTTCACTTGTCCGGAC-AAAGACCTTCGAGAAAAT----G---ATGCGTTTGCCGAGCG-CATTAAAGTTTGCAGACGACTGTGCCCTCATAGCACAC-AG-AAGAAACCACCTTTG---------A------GTC---AATCGTTGACCGTTTT-C-G-----CAGCATGCGGCCAGGAGGCTGTATTGGTATCACAATCAGTCTGCGG-GAA-AACAGAGG-TGTAGGGTGTTCA-GCCAGCCC-GACAC--AAC-AACATAGCC-TCTCTGCCAGTCAT--C--TAACCA-TCGACGGA-GTCCAGATGAATTGT---TGTGGA--CAGTTTTAAATACCTTGGGCAGCTACAATCT------CCGC-A--ATGATGGAAATAA--T-TGGTCAAA-GAGATTTTTTCCAGGGATCCATGAAAGCCAGCTTA--AAGCACTCGGGCAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagcctttgacagtaaccctagtctcc
gi|9 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGAGCT-CTAAGC-CCAA--AATGCACATA-TTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GGG-C-CTTC-A-attc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GTTCACCCGAACAACAAAGACTGCTACAGCAAACCAGGCGGAGGAAATCCATCGAGGGTTCAACGGCTGGTGAGGCGCTGCAGCAAGGCATTAATGAATGCTTAGGGTATTATAGAACACAAAAGACATCATGACCACCCACTGCGGCCAAGGAGGTTACCAGCCGTGACGATTCTCTGTACCAATTGATCAGGGCTTCTGCAGCAGAGAGAGTGGGGTCCCTGTGCAACGGCTTTTCCACTTTAATATCCTTCTCACACAGGATGCGTTGTACGTTCTATAAAGGTCCTGTGGCGACGGGGGATTGGCGAAAGCAACAGGTGGAGGTGACCACTGGGAGTTGTAGTCAGGAACCTGCACGTGGACAGATGTGGTCGCCCCTTCTCTGTACTCAGGGCAGCAGAGAAGTCCGGTAACATCTTTAGGATAGCACTGCTCACCCTAGTAAGGGAGGGACCTAGAAAAGGTGGTCTAAACATTGCCTGTCCTACATTATTTGGCCAATAAGCCGTGGCTGACAGATCTTCCATTCATGCACATGCGGTCGAAGCCAAAGAAGAATAAGGAAACTCTTATGAGGAGCATGGAATGTTCGTACACTTATGGGGCCGAAAACATCACAACAAGACCCCAAAGTAGAACAGTGTATGTTCACAGCAAGACCCCAAAATAGAACAGTAGACACT
Unaligned ( gi|10 ): CTCACTCGAACAACTTGAAAGACTGCTACGGCAGCCCAGGCGGAAGAACCCCAATATCTGGGTCCAACGACTGGGAAGGCGATGCAGCAAGACATTGTGGAATGCTCAGGGCGTAACNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCGTGACAGGAGTATAAAAGACCGCCACGGGCCATCCACTGCAGCCAGAAGAGGTATCAGGCTAATGGTTCTCTTTGCCATTGGGTCAAGGTTTCTTCTGCCGAGAGAGTGGGATTGCCCCCGTGCAACGGTTTCACCTTAATCAAAATCACGCCACAGGTGTCTATAGGACTCAGCTTTCGACCACAATAACGAAGTCTGTGGCAATGGGGGAGTGACAAAGATGGCAGGTGGGAGTAAACACAGGAGTCATTAGTTCACAAGGCCTGCACGTAGGCGCCTTGGACCAGAGGTCGTCGTTTTTCTTTGAACCCAGAG
Unaligned ( gi|13 ): TAATGCTGTTGTCATCTCGTCACTGCTCCATGGCTGTGAAACCTGGACCTTCTACCGCACACACATCAAGCAGCTGCAGAACAGTTCCACACGCGCGCTCTGCGAGCAATCATACGAATACGTTGGCAAGACCAAGTAGTCCTGGACAGAGCGGACACCACTAGCGTTGAAACCAACACCATCCAAGCTCAGTTTTGATGGTCAGTCCACGTTATCCGCATAGAGGAATTCAGAATTCCACGGCAGATTTTCTATGAGTATTTAGCGTCCAGCAGACGCAAAAAGAGGTATAAAGACAACCTCAAAGTCAACAATGAACAATCCCTCAACCTAGGCAGCTAGAATCTGCA
Unaligned ( gi|17 ): CCAGGATCACAGAAGCCAAACAAAGCTATCCCAGAGTGAACAGTTTCCTCAGGAGATAGGAAATCATGCTTGCGACAAAGGCTAAGATATACATGTC
Unaligned ( gi|19 ): CTCTCTCACTCTATATGGCGTGTAGACATGGACCCATCAAAACTGGAGCAATTCCACA
Alignments
lowQualScore : 111 111111 11 111 2222 111111 111 2222 44444444444444 333333333 222 666666666666666666 444444 1 3333333 2222 11 1 33333333 11 11 1 2 2222 2222 2 11 11 1 2 55555555555 44444 444444 11 11 1 1 33333 11 11 3333333333 1111 111 1111 33333333 111111 1111 1111 111 11111 111 111111 1111 11111 2 222 22222 111 666666666666666666666666666666666666666666666666 1111 1111 11 1 3333333 1111 111111 22222 11 22222222 333333 6666666666666666666666666666666666666 222222
lowQualScore : 0 1 777 777777 55 1 8 3 88 3 0 1 777 0 11 1 0 2 0 9 2 2 3333 1 22 999999 1 1 1 6 1 0 1 6 6 444 6 1111 99 1 55555555555555 1 000000000 9 0 333 7 777777777777777777 1 7 0 444444 4 0 1 7 2 0 8888888 2 8 0000 33 0 0 22222222 2 0 33 3 33 1 3 0 3 1 6 0 1 3 9999 7 8888 7 6 1 1 999 22 88 1 66 1 1 2 1 1 0 3 6 22222222222 00000 3 111111 3 0 22 33 3 3 1 0 6 33333 22 1 22 22 1 1 1 1111111111 6666 1 555 1 1 2 1 999 3 1 6 0000 22222222 2 1 6 99 999999 6 7 7 99 6 7 0 1 6 1 6 5555 2 1 99 6 1 1 6 99 4444 6 1 444 6 44 6 1 1 77777 1 77777 2 111 666666 888 2222 5 88888 5 5 2 000 11111 6 7 8888888 8888 000 1 0 1 6 1 999999999999999999999999999999999999999999999999 0 4444 22 4444 77 1 8 8 6 3 6 1 5555555 77 6 7 1111 6 3 222222 999 88888 0 6 11 1 1 00000000 1 555555 6 2 8888888888888888888888888888888888888 6 1 77 6 1 6 000000 6
lowQualScore : . . ... ...... .. . . . .. . . . ... . .. . . . . . . . .... . .. ...... . . . . . . . . . ... . .... .. . .............. . ......... . . ... . .................. . . . ...... . . . . . . ....... . . .... .. . . ........ . . .. . .. . . . . . . . . . .... . .... . . . . ... .. .. . .. . . . . . . . . ........... ..... . ...... . . .. .. . . . . . ..... .. . .. .. . . . .......... .... . ... . . . . ... . . . .... ........ . . . .. ...... . . . .. . . . . . . . .... . . .. . . . . .. .... . . ... . .. . . . ..... . ..... . ... ...... ... .... . ..... . . . ... ..... . . ....... .... ... . . . . . ................................................ . .... .. .... .. . . . . . . . ....... .. . . .... . . ...... ... ..... . . .. . . ........ . ...... . . ..................................... . . .. . . . ...... .
lowQualScore : 2 2 555 222222 88 0 8 0 00 2 2 0 888 8 88 0 2 5 2 2 5 5 5555 0 00 222222 5 0 0 7 0 7 0 7 7 888 7 7777 00 0 00000000000000 4 555555555 2 7 333 3 000000000000000000 0 3 7 777777 2 2 0 0 5 0 5555555 5 8 8888 88 0 2 88888888 5 8 00 2 88 0 7 7 3 0 7 7 0 7 7777 3 3333 3 7 0 0 333 00 55 0 55 0 0 5 0 0 7 3 7 00000000000 77777 7 777777 7 7 77 33 3 3 0 7 7 00000 77 0 33 00 0 0 0 3333333333 3333 0 000 0 0 0 0 333 7 0 7 8888 77777777 2 0 7 22 222222 7 5 8 22 3 8 7 0 7 0 7 2222 5 0 22 7 0 0 7 22 2222 7 0 333 4 88 7 5 0 00000 0 33333 5 777 444444 666 1111 7 33333 0 7 9 000 00000 6 1 7777777 1111 000 4 7 7 7 0 555555555555555555555555555555555555555555555555 7 2222 22 6666 44 0 0 0 7 3 7 0 8888888 77 7 5 7777 7 7 000000 333 55555 7 7 88 0 0 33333333 0 222222 7 5 2222222222222222222222222222222222222 7 0 77 7 0 7 888888 7
consensus : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAATGCACANATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTC-A-CGATCAGGN-ACAGCC--CCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CGA-CGAGGGA---A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAC----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGT-GAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A--CT-ATCGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACN-G--CGAAGAC-AAA-ACCAT---GAAAAN----GCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-GAA-A-CAGAGG-TCC-------TCCN-CCAGCCC-GAACCCGAC-AGCA---CC-CCCCAGCCA-CCGT-GC--TCGCCA-TCGACGGC-GTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-A-CA-C-TCTCCAGCA--A--GGA-C-------AC-TGGACAAA-GAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
Reference ( family-2329 ) : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAANGCACATATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTC-A-CGATCAGGN-ACNGTCAACCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CGACCGAGGGA-TTA-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAT----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGTCGAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A--CTCATCGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACN-G--CGAAGAC-AAA-ACCAT---GAAAAG----GCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-GAA-A-CAGAGG-TCC-------TCCN-CCAGCCC-GNACCTGAC-AGCA---CC-CCCCAGCCA-CCGT-GC--TCGCCA-TCGACGGC-GTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-A-CATC-TCTCCAGCA--G--GGA-C-------AC-TGGACAAA-GAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
gi|1 : CTGTTAGACGAGAAGAGGAAAGCTTTTATTGATTGGCAAAACCACCCAAACTGCTC----CTCCAGGCGTG-ACAGATACAAAG--ACTACAAAGCCAGAACACAGCGGGAGTTCCGCAACATGCAGAATCAGTGGTGGAAAAGAAAGGCTGAAG---TGCAA--CTATATGCAGACTCCAACAACTCCAAGATG------CTGTTCAGTGCAA-TAAAGGCCATAT-AT-GT-T-CCCTCAA-CG-TCAGGA-ACAGCC--CCTCTGT--AT-TCTGCTGA
gi|11 : taaccactgggagtcattagtcacaaacctgcacataggcggctttgggaccagtggtcgtcgtttcttcgaaccaagggcagcggaaaacttcggcagtatcctaggcgactgagcagccttttcaggagcgcactgctcaccctaataaaggagggggctagaaaaggtgccccaaaaaaatgcctgccctacccaatctggccagctaaccgcggctggcaagatctacccatcctgcggtcgaccaaaacagaaaaagaaaatcattgttggaacatggaacgtacgtaaccttttggatcgagacgacgttgcaagacttcggagaaggacggctcttgtagctaaagaactggcaaggtataacattgacattgccgcaatcagtgaaactcggcagtgagtgaatataccttcttctggaagggtaaagcccagaacgaagacaaaatacatggtattgactctgccatcaagacaaaccaaaaaaaaaaacacaaaaaaaaaacaacctccgacagattccgagcctccccactgacaccaacgagaaactcatgaagcttcgtatccctatcagcaacaaccgcttctttaccatcattaccgtctatgccccgactctgactagcacagaggaagtgaaagagcagttttatgttgacctagatgctctgttgcgtactacacccatcaatgacaagcttttagtgttgggtgatttcaacgctagggacagcaaccagtggaaaggggtgatgggaaagcatgggacagggaaaatgaacgggaccgcttgtttctactgagtaaatgtgcccaatacgacttgctgctgaccaatacaaccttcaggcaggttgataagttcaagagaattggatgaacccgcgatctaaacagtggcatcttattgactatatcatcacctgccaacgtgacagcagagatgtcatcttcacaagggcaatgcgaggcgcagattgctggactgatcacagacatgtccgagcaaaactcaacctctgcatcgtcccacaccaccggagacgcccaaagctaattagactcgcattcaacacagcatgccccctctctagcagacaccgccaagatttccaaaccagcagaagaccactcacaggctcgccaaaagaaaagtggagttaattcaaggaagtggtcaccgaaacagccacatcagtattaggcccaaagaagaggtctcaccaagattggtttgacgaaaatgatgcatcagtgcattcaCTTTTTGACCT------CCG-C-CG----TCTC-ACT-GTCCG--GAC-AAAGACCTTCGAGAAAAT----G---AT-C--TTG--GAGGCAT--TG---TTTGCAGACGACTGTGCCCTCATAGCACACAGAGAAAA-CCACCTGC-A---------A-----GTC---AT-CGTTGACCGGTTCGCAG-----ATGCGG----CCAGAC---TG-TTTGGTATCACAATCAGTCT-CGG-GAA-AACAGAGG-TAG-------TTCAGCCAGCCCCGAAC---AC-AACA---TGGCCCCAGCCA---GT-CA--TCACCA-TCGACGGA-GTCCAGATGAA--TTG---TGTGGAC--AGTTTTAAATACC-TGGGCAGC-A-CA-A-TCTCC-GCA--GATGGATC-------AA-TGGTCAAA-GAGATTTTTTCCA-GGATCCA-GAAAGCCAG--CT--AAGCACT-CGGCAGATTC
gi|12 : ccGCAGACTCCAACAACTCCAAGATG------CTGCTCAGAGCAA-AAAAGGCCATAT-AT-GGTT-TCTCC-A-CG-TCAGGA-ACAGTC--CCTCTG-TGC--TCTGTTGACGGTGC------TGTCA-TCATCAAGGACAAAGAGGGAATCATT---G--CTAGGG----A-AGAGCACTTCAGCCAGCTACTTAACCGGCCATCAACT--GTCGACCGGGCTGTGCTACAGCAGATACC---ACAG-AAGT-CTA---CGAAAGAG---GACCTTGA--CC-TTCCCC---CTACTGAAGACGAGGTC-AG-AGCTGCAATAAAACAGATGAAATGTGGCAAAGCCCCAGGGAAGGATGG-ACTCCCCGCAGAAATCTTCAAGGCTC-TGGGAGACATAGCTTTTCAAGCC----TTCTATGACGTCCTCTGCACTATATGGGAGGAAGagagtgaaagtcctgcagcagaaaggaatcatgcttgcgacaaagttgaagatatacagagctgtagtcctct
gi|14 : atAGCTCGGATGCCCTGTAAAGTTTA-CAA---------A--CTCATCAGGTTGTTC-ATGAT--AACATGA-------GG-ATGATGTCTTGTCCGA--CGGTGAGCCTCAAGAGGGCT-TTGCCAT-TCCA-----TGGAGTGAA--ACAAGGCTGCGTGCTTGCT-C-AGTGATGTTCAACCTCTTCT-TATCAC------AGTACTG-CTCGA---GCTATGAT-GAACTAGTACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGA--T------GCG-GGCG----T-TT-AGA-G--CGAAGAC-AAATACCAT---GAAAA-----GCTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGGTCACTGATGGTCa
gi|15 : -A-CAGAGGATCCAAGC---TCCA-CCAGCCC-GAAAC--AC-A--A---CC-AGCCAGCC--CAGTCAC--TCGCCAATCGACGGAAGTCCAGCTGAA--ATAGTCCGTGGA----ATTTTAAAT----TG--C--C-A-CATC-TCTCC-GCA--GATGGATC-------AC-TGGAAAAAAGAGATCATT-CCA-G-ATCCA-GAAAGCAA----C--AAAGATC-GGCCAGAttcggtaagttcgtatgt
gi|16 : CAGACTCCAATAACACCAAGATGGCTTTGCTTTTCAGTGCAAATAAAGGTCATATTACCGG-TTCCCTC-AACG-TCATGTCACAGCT--CCTCTGT-GCC-TCTGCTGACGGTG-C-TGC-CATCATgtgcaacagtcctacagcagataggaatcatgcttgcgacaagctgaagataataca
gi|18 : tatgcCAGTCTGCACTTGAGCGAATTCCTCAACAGCCAGT-C-AT--C-AAAGAGATAGA----GAACCC-TCCATC---T----ATGGGTGACCTCAAAAAG--Gcaa
gi|2 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGC-CCAA-AATGCACATATTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GG-G-CCTTC-A-TAATCTGGC-TCTGTC-----CTGTTGCTATCTGTAGACGGAGCCATGCTCATCATTCATCAAGGACA---AGGCTATCA-T--CAA-CGAGAGATTTATGGAGCACTTCAGCCAACTTCTCAACCGCCCGTC--CTTGGTAGACCAGTTTGTACTTGAACGAATCCCTCAACAGCCAGT-C-A---CTGATGAGCTAGA---TAA--CC-TTCACC---C----ATGGATGAACTCAAGAAG--GCCACCAAGCAGATGGCATGTGGGAAAGTTTCGGGCAAGGACGGCAAT-CCAGCGGAGGTGTACAAAACACTT-AGCAACAAGGCCTTACATGCA----TTCCA-GA-GTCTTGACCAATGTTTGGGAAGAGGAAGAAATGCCTGC-TGATATCTAAGACGCAGCGATAGTCGCCCTGAACATGAAGTAG-GGCT----ATTG---CACAAACTGTT----GAAACTATAGGGGTATATCACTGCTTTCCATTGC----------TCCTTGCTCGTATCATCCTGAACAGGCTAATCTCATCCGCTA-CAGAGGAAAATTTCACC-GAGTCTTGATG-CGCTTCCGCTCC-AGTCGAA--GCGCA--GTGGACATGATCTTCTTTGGAAGACAGGTCCAGGAGAAATAACTTGAGCAAAACATGAACCACTGCCGAGTCTTCAAAGACTGCACAAAGGCTTTAAACACTGTCAACAGAGAAG--------------TTCGGGATGCTCGGATGCCCTGAAAAGTTCA-CAACA--CTCTGAGTCTCATCAGGCTGTTCCATGAT--GACATGAC------GG-GTGCGGTTCTGTCTGA--CGGTGAGCCATCGGAGGGCT-TTGCAAT-CTCAA---ATGGAGTGAA--ACAAGGTTGTGTGCTTGTC-CCCGTGCTGTTCAATTTCTTTT-T--CAAC---CAAGTACTG-CTGCA--CGTTGTGCCAGGCCTAG-ACCTAGGTGTCCACA-TCACATACCGG--CTGGACGG---CTCACTGTTTGACCT------GCT-G-CA----TCTT-ACT-G--TGAAGAC-AAA-ACCAT---GAAAAG----GTTCATAC--TTC--AAGCC-C--TA---CTTGCCGGTGACTGTGCCCTGATGGCCCAC-AGGAGGA-TCACATGT-G---------A-----A-C---A--CATT------TTC-T-G-----AAGCAT----CCAAGA---TG-ACCGGTCTGACAATTATTCT-CGA-GAA-A-CAGAAG-TCC-------TCCT-TCAGCCC-GCACCTGAC-AGTA---CT-CCCCAGTCA-CCAT-GCT-TCGCCA-TCGACGAC-ACACGGATGAA--GAA---CGTCGATGCA--TTCAAGTACT-TGGGCAGC-A---------CCAGC--------A-C-------AC-TGGACAAA-GAGATTGCAGCCA-AGATCCA-GATAGCCAG--TC--AAGCACT-GGGCAAACTCtc
gi|3 : CTCCTTGCCAGAAAGAACAAAGCATTCATGGAGTGGTAGAATGATCTAG---TCTCT--GCTCCAAGGAAGGATAGGTT-GAAATCCCTCCAGACTCAGA-C-CAACGCGAGATTAGGAGGGTGCAAAACCAGTGGTGGCGGAAGAAG--TGCAGCGGGC---GGCT-------GATATCAACAACATCAAGCAG------TTCTTCAGCTCCA-TCAAGTCCATCT-TT-GG-C-CCTTC-A-GAAACAGAC-ACCGCAAAACT--GTTG---TCAGCAGACGGTACC--GCTC-----TGGTCAAGGACT---AGACAGGCATTTCCAACCGTTGGA---A-GGAGCACTTCAGTCAAACGCTTA----CTCATC-A----GTCGCGCAGTCTGCACTCGACCAGATAGCCCAGCAGCCAATTC-AATCC-AAA---CTAGA---TGA--TCATCCAACTATC----GTGGAT--ACT-GAGAAA--ACAGTCAAGTAGATGAATTGTGGCAAGGACCCTGACATAGATGG-AGTACCCGCAGAATTGTACAGAGTGC-T---CGACAAAGACTCAC-TGCAGGCTTTCCATGAAGTTCTTACTAACATCTAA----AGGTTGA--TGTATACAGGATTTCTTGGATGTCACCATAGTCGCACCGTACAAGAA-CAGTGGCT-----CT------CAAACTGACAGTGGGAACTACAGAGGCATTTCACTGCTTTCAATAGCC--GGCAAAATCCGAGCACGCATCATCCCGAACAAGCTCACTACGTCCA-TACCCGAACAGAACCTC-CCAGAATCCCAATACAGTTTCTGTCCT-----GAAAGGCCCACCATTCACATGATCTTCACCGTGAGGCAAATACAAGAGAAGTGATTCGAGC------T---CTACT----AGTCAT---AGACCGGACGAAGGCGTTCGATACGGTCAACAGAGAAGCACTGTGGGTCATTCTTGGTAAACTAGGCTGCTCGAGGAAGTTCATCAA-A--CTT--A---TAAT--ATCTGTTTCATAAT--GACCCGAC------AG-GAGA-GTACTGTCAGA--TGGATGTCCTTCGGAG----------------AA---AT----T-AA--ATAAGGTTGTGT-CCTGTG-TCAGTGCTGTTCAACCTCTTTT-T--CACC---CAGGTGTTG-CTACA--TGTT
gi|4 : agaaatggaactagtccaaggacattgtgaagtagtcagccgaaacagtactgggaccaaacaatcgcacatatcaagactagttcaatgaaaatgacagcgctgtcgaaaacCTCAGGAAGCTCGGATGCCCTGTAAAGTTTA-CAACA--CTC--A------TCAGGTTGTTC-ATGAT--AACATGAC------GG-ATGATGTTCTGTCCGA--CGGTGAGCC-TCAGAGGGCT-TTGCCAT-CTCCA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCAGTGCTGTTCAACCTCTTCT-T--TACC---CAAGTACTG-CTTCA--GGCTATGATGAACCTAG-ACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-AGA-G--CGAAGAC-AAATACCAT---GAAAAA----GCTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGTGCACTGATGGTCCACAAGGAGAA-TCATC--C-T---------A-----ATC---A--GACT------ATT-G-GGGGAAAATTAT----CC--GA---TGCATAGGTCTGGCAATTAGTCT-CGGAAAA-A-CAGCAG-TCC-------TCCT-TCAGCTT-GAACCTGAC-AGTA---AC-CCCCAGCCA-CCAT-GCA-ACACCA-TCGAC-GC-ACACAGCTGAA--GAA---CGTCGATGCA--TTGAAGTACT-TTGGCAGC-G-C--CATCTCCAGCGATA--GCA-C-------TC-TGGACAAA-GAGATTGTAGCCA-GGATCCA-GAAAGCCAG---CAAAAGCACA-CGGCAACCTC
gi|5 : cACTTAA-ACATTGATATATG---TCCGCTATCGC--CTGGACGG---TTCATTGTTCGACCT------TCG-C-CG----TCTC-ACA-A--CTAAAAC-AGA-GACAT---TAAAAAAACTGCTCAT-C--T----AAGTT-T--TG---TTTGCTGATGACTGTGCCCTGATGGCCCACAAAGAGTA-CAACCTGCAG---------ACGATCGTCGATA--AGTT------CTC-C-G-----TGGCGA----CCAAGC---TG-TTTGGTCTTACAATCAGTGT-GGG-GAAGA-CCGAAG-TTC-------TCCT-CCAGCCT-GCA-CTGATGAGCG---CC-CCACAGCCG-CCGT-GCATTTACCA-TCGACGAT-GTTCAGCTGAA--GAA---CGTAGACGC--CTTTAAGTACC-TATGAAGT-ACCATC-TTT--AGCA--AC-GGC-C-------TCTTAGATTAG-GAAATAGCAGCCC-GAATCCT-GAAAGCCAG--TC--CGGCAAT-GGAAAGACTcacaatcaaagtcttgcagcataaggacattctcctcagaaccaaactaaaggtatgcaatgctgtcgtcctctcgttactgctctatggctgtgaaaccggaccctctaccgcagacatatgaagaagatggaacaattccatacgcactctttgtgtgcaatcatgcaaatacgttagcaggaccgcatcactaaccaagaaatcctggacagagcggataccactactagcgttgaagccaaaatcatccaagctcaacttcgataatctggccatgttatccgtatggaggagtttagaattccatgaaagtttttctatggggagctagagtctggcagtgtcgtccgaaaaaagagtataaagacaacctcaaaaccagcctcaaatggacaggccttgaacctaggcagatcgaatctg
gi|6 : CTGTACAAGAA-CAAAGGCTGAAAACTGACACACAGACTGA------AAACTATAGGAGTATATCCTTACTTTCCATCGCCTGG--AAAATCCTTGCTCGTATCATCCGCAACAGGCTAATTTCATCTATTGC-AGAGGAAAACTTC-CC-GGGTCGCAGTGCCGCTTCCGCCCCCAGT-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGAGAAACATTGTGGATCATTCTCAGGAACCTCAGATGCCCTGCAAAGTTTA-CAACA--TTC--A------TCGGACTGTTCCGTGAT--GATATGAC------GG-GCGAAGTTCTGTCTGA--CAGCAAGCCCTCAGAGGGCT-TTGCCAT-CTCCA---ATTGAGTGAC--GCAAAGCTGTGTGATTGCT-CCCGTACTGTTTAA-TTCTTCT-T--TACC---CAAGTACTG-CTTCA--CGCTGTGAGAGACCTAG-ACCATGGTTTCTACA-TCAGTTACCAG--CTTGACGG---CTCATAGTTTAACCT------GCG-G-TG----TCTT-ATT-T--CCAAGATGAAG-ACCAT---GCAAAG----GCTCATAC--TTG--AAGCC-C--TA---TTTGTCGATGACTGCGCACTGATGGTCCTCAAGGAGAA-TCATCTAC-AGCCTATTGTA-----GAC---A--AGTT------TTC-C-G-----AAGCAT----Cttgctctggaccagagtgttgaaacacaaagacatccgattgtccattaaactcaaaagtgtacaatgcagttgtggtctcttcgctgctgtacggatgtgagacatggaccctctatcgcaagtacatcaagcttttagagcaactccacatgcactctctccgccacatcttgcatatttactggtaggacagaaattccatcctggaggtacacgacacagcggaccctacaaacattgaggcaaaggtgctttgggcacagttacgctggacttgccacatgagccacataaatgattccaggatatccagacaactgttgggctcaacagttgacgggtagtcgcagtcgggtccgaccaaagaagaggtacaaggacaatggcaaggcctacttgtaagtagaccgactttccaccga
gi|8 : cAAATTCA-CCACAGGCTC--A--TTAA-CGGCCTCTTCCATGACAGGACATGACTGGACAGGTGTGCGGTTTTGTT-GATACGGAGAACACTTAAACACCTGTTGTTATACTCATTTTACGGAGTAGAGGAGAAGGATGC-TGTTTGCCGCCTGTGCTCTTCAACCG-TTCTAT--CACGGAGCAGGTTCTAACTCCATGCGCT-TGAAAGATC-GG-CCGTAGGTTTACGTAATCAGTTAACTGATCTGGAGGGATTCTT-CTTTTTGACCTCGCGCTGCGTG-CGATTATCTTCACTTGTCCG--GAC-AAAGACCTTCGAGAAAAT----G---ATGCGTTTGCCGAGCG-CATTAAAGTTTGCAGACGACTGTGCCCTCATAGCACACA-GAAGAAACCACCTTT-G---------A-----GTC---AATCGTTGACCGTTTT-C-G-----CAGCATGCGGCCAGGAGGCTGTATTGGTATCACAATCAGTCTGCGG-GAA-AACAGAGG-TGTAGGGTGTTCAG-CCAGCCC-G-ACACAAC-AACATAGCC-TCTCTGCCAGTCAT--C--TAACCA-TCGACGGA-GTCCAGATGAATTGT----TGTGGA--CAGTTTTAAATACCTTGGGCAGCTA-CA-A-TCTCC-GCA--A--TGA-TGGAAATAAT-TGGTCAAA-GAGATTTTTTCCAGGGATCCATGAAAGCCAGCTTA--AAGCACTCGGGCAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagcctttgacagtaaccctagtctcc
gi|9 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGC-CCAA-AATGCACATATTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GG-G-CCTTC-A-attc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GTTCACCCGAACAACAAAGACTGCTACAGCAAACCAGGCGGAGGAAATCCATCGAGGGTTCAACGGCTGGTGAGGCGCTGCAGCAAGGCATTAATGAATGCTTAGGGTATTATAGAACACAAAAGACATCATGACCACCCACTGCGGCCAAGGAGGTTACCAGCCGTGACGATTCTCTGTACCAATTGATCAGGGCTTCTGCAGCAGAGAGAGTGGGGTCCCTGTGCAACGGCTTTTCCACTTTAATATCCTTCTCACACAGGATGCGTTGTACGTTCTATAAAGGTCCTGTGGCGACGGGGGATTGGCGAAAGCAACAGGTGGAGGTGACCACTGGGAGTTGTAGTCAGGAACCTGCACGTGGACAGATGTGGTCGCCCCTTCTCTGTACTCAGGGCAGCAGAGAAGTCCGGTAACATCTTTAGGATAGCACTGCTCACCCTAGTAAGGGAGGGACCTAGAAAAGGTGGTCTAAACATTGCCTGTCCTACATTATTTGGCCAATAAGCCGTGGCTGACAGATCTTCCATTCATGCACATGCGGTCGAAGCCAAAGAAGAATAAGGAAACTCTTATGAGGAGCATGGAATGTTCGTACACTTATGGGGCCGAAAACATCACAACAAGACCCCAAAGTAGAACAGTGTATGTTCACAGCAAGACCCCAAAATAGAACAGTAGACACT
Unaligned ( gi|10 ): CTCACTCGAACAACTTGAAAGACTGCTACGGCAGCCCAGGCGGAAGAACCCCAATATCTGGGTCCAACGACTGGGAAGGCGATGCAGCAAGACATTGTGGAATGCTCAGGGCGTAACNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCGTGACAGGAGTATAAAAGACCGCCACGGGCCATCCACTGCAGCCAGAAGAGGTATCAGGCTAATGGTTCTCTTTGCCATTGGGTCAAGGTTTCTTCTGCCGAGAGAGTGGGATTGCCCCCGTGCAACGGTTTCACCTTAATCAAAATCACGCCACAGGTGTCTATAGGACTCAGCTTTCGACCACAATAACGAAGTCTGTGGCAATGGGGGAGTGACAAAGATGGCAGGTGGGAGTAAACACAGGAGTCATTAGTTCACAAGGCCTGCACGTAGGCGCCTTGGACCAGAGGTCGTCGTTTTTCTTTGAACCCAGAG
Unaligned ( gi|13 ): TAATGCTGTTGTCATCTCGTCACTGCTCCATGGCTGTGAAACCTGGACCTTCTACCGCACACACATCAAGCAGCTGCAGAACAGTTCCACACGCGCGCTCTGCGAGCAATCATACGAATACGTTGGCAAGACCAAGTAGTCCTGGACAGAGCGGACACCACTAGCGTTGAAACCAACACCATCCAAGCTCAGTTTTGATGGTCAGTCCACGTTATCCGCATAGAGGAATTCAGAATTCCACGGCAGATTTTCTATGAGTATTTAGCGTCCAGCAGACGCAAAAAGAGGTATAAAGACAACCTCAAAGTCAACAATGAACAATCCCTCAACCTAGGCAGCTAGAATCTGCA
Unaligned ( gi|17 ): CCAGGATCACAGAAGCCAAACAAAGCTATCCCAGAGTGAACAGTTTCCTCAGGAGATAGGAAATCATGCTTGCGACAAAGGCTAAGATATACATGTC
Unaligned ( gi|19 ): CTCTCTCACTCTATATGGCGTGTAGACATGGACCCATCAAAACTGGAGCAATTCCACA
Alignments
lowQualScore : 111 111111 11 111 2222 111111 111 2222 222222 333333333 222 4444444444444444444 444444 1 3333333 2222 11 1 33333333 11 11 1 2 2222 2222 2 11 11 1 2 55555555555 44444 444444 11 11 1 1 222222 11 11 3333333333 1111 111 55555555555 111111 1111 1111 111 11111 111 111111 1111 11111 2 222 11111 111 666666666666666666666666666666666666666666666666 1111 1111 11 3333333333 1111 11111 22222 11 22222222 222222 222 1 555555555555555555555 222222
lowQualScore : 0 1 777 777777 55 8 1 88 3 0 1 777 0 11 1 0 2 0 9 2 2 3333 1 22 999999 1 1 1 6 1 0 1 6 6 444 6 1111 99 1 666 888888 1 000000000 9 0 333 7 0000000000000000000 1 7 0 444444 4 0 1 7 2 0 8888888 2 8 0000 33 0 0 22222222 2 0 33 3 33 1 3 0 3 1 6 0 1 3 9999 7 8888 7 6 1 1 999 22 88 1 66 1 1 2 1 1 0 3 6 22222222222 00000 3 111111 3 0 22 33 3 3 1 0 6 111111 22 1 22 22 1 1 1 1111111111 6666 1 555 1 1 2 1 999 3 1 6 6 99 11111111111 2 1 6 99 999999 6 7 7 99 6 7 0 1 6 1 6 5555 2 1 99 6 1 1 6 99 4444 6 1 444 6 44 6 1 1 77777 1 77777 2 111 666666 888 2222 5 88888 5 5 2 000 88888 6 7 8888888 8888 000 1 0 1 6 1 999999999999999999999999999999999999999999999999 0 4444 22 4444 77 1 8 999 6 6 6 8888888888 1 6 6666 6 3 55555 999 88888 0 6 11 1 1 00000000 1 777777 6 5 6 000 5 888888888888888888888 6 1 77 77 6 000000 6
lowQualScore : . . ... ...... .. . . .. . . . ... . .. . . . . . . . .... . .. ...... . . . . . . . . . ... . .... .. . ... ...... . ......... . . ... . ................... . . . ...... . . . . . . ....... . . .... .. . . ........ . . .. . .. . . . . . . . . . .... . .... . . . . ... .. .. . .. . . . . . . . . ........... ..... . ...... . . .. .. . . . . . ...... .. . .. .. . . . .......... .... . ... . . . . ... . . . . .. ........... . . . .. ...... . . . .. . . . . . . . .... . . .. . . . . .. .... . . ... . .. . . . ..... . ..... . ... ...... ... .... . ..... . . . ... ..... . . ....... .... ... . . . . . ................................................ . .... .. .... .. . . ... . . . .......... . . .... . . ..... ... ..... . . .. . . ........ . ...... . . . ... . ..................... . . .. .. . ...... .
lowQualScore : 2 2 555 222222 88 8 0 00 2 2 0 888 8 88 0 2 5 2 2 5 5 5555 0 00 222222 5 0 0 7 0 7 0 7 7 888 7 7777 00 0 000 000000 4 555555555 2 7 333 3 3333333333333333333 0 3 7 777777 2 2 0 0 5 0 5555555 5 8 8888 88 0 2 88888888 5 8 00 2 88 0 7 7 3 0 7 7 0 7 7777 3 3333 3 7 0 0 333 00 55 0 55 0 0 5 0 0 7 3 7 00000000000 33333 7 777777 7 7 77 33 3 3 0 7 7 777777 77 0 33 00 0 0 0 3333333333 3333 0 000 0 0 0 0 333 7 0 7 7 22 55555555555 2 0 7 22 222222 7 5 8 22 3 8 7 0 7 0 7 2222 5 0 22 7 0 0 7 22 2222 7 0 333 4 88 7 5 0 00000 0 33333 5 777 444444 666 1111 7 33333 0 7 9 000 77777 6 1 7777777 1111 000 4 7 7 7 0 555555555555555555555555555555555555555555555555 7 2222 22 6666 44 0 0 222 7 7 7 8888888888 0 7 5555 7 7 22222 333 55555 7 7 88 0 0 33333333 0 000000 7 2 7 555 5 333333333333333333333 7 0 77 77 7 888888 7
consensus : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAATGCACANATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTC-A-CGATCAGGN-ACAGCCCCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CAAC-GAGGGA---A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAC----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGT-GAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A--T--T-ATCGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACN-G--CGAAGAC-AAA-ACCAT---GAAAAN----GCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-G-AA-A-CAGAGG-T-CC-------TCCNCCAG-CCCGAACCCGAC-AGCA---C-CCCCCAGCCA-CCGT-GC--TCGCC-ATCGACGG-CGTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-ACA-ATCTCCAGCA--A--GGA-C-------AC-TGG-ACAAAGAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
Reference ( family-2329 ) : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAATGCACANATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTC-A-CGATCAGGN-ACAGCCCCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CGAC-GAGGGA---A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAC----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGT-GAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A--C--T-ATCGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACN-G--CGAAGAC-AAA-ACCAT---GAAAAN----GCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-G-AA-A-CAGAGG-T-CC-------TCCNCCAG-CCCGAACCCGAC-AGCA---C-CCCCCAGCCA-CCGT-GC--TCGCC-ATCGACGG-CGTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-ACA-CTCTCCAGCA--A--GGA-C-------AC-TGG-ACAAAGAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
gi|1 : CTGTTAGACGAGAAGAGGAAAGCTTTTATTGATTGGCAAAACCACCCAAACTGCTC----CTCCAGGCGTG-ACAGATACAAAG--ACTACAAAGCCAGAACACAGCGGGAGTTCCGCAACATGCAGAATCAGTGGTGGAAAAGAAAGGCTGAAG---TGCAA--CTATATGCAGACTCCAACAACTCCAAGATG------CTGTTCAGTGCAA-TAAAGGCCATAT-AT-GT-T-CCCTCAA-CG-TCAGGA-ACAGCCCCTCTGT--AT-TCTGCTGA
gi|11 : taaccactgggagtcattagtcacaaacctgcacataggcggctttgggaccagtggtcgtcgtttcttcgaaccaagggcagcggaaaacttcggcagtatcctaggcgactgagcagccttttcaggagcgcactgctcaccctaataaaggagggggctagaaaaggtgccccaaaaaaatgcctgccctacccaatctggccagctaaccgcggctggcaagatctacccatcctgcggtcgaccaaaacagaaaaagaaaatcattgttggaacatggaacgtacgtaaccttttggatcgagacgacgttgcaagacttcggagaaggacggctcttgtagctaaagaactggcaaggtataacattgacattgccgcaatcagtgaaactcggcagtgagtgaatataccttcttctggaagggtaaagcccagaacgaagacaaaatacatggtattgactctgccatcaagacaaaccaaaaaaaaaaacacaaaaaaaaaacaacctccgacagattccgagcctccccactgacaccaacgagaaactcatgaagcttcgtatccctatcagcaacaaccgcttctttaccatcattaccgtctatgccccgactctgactagcacagaggaagtgaaagagcagttttatgttgacctagatgctctgttgcgtactacacccatcaatgacaagcttttagtgttgggtgatttcaacgctagggacagcaaccagtggaaaggggtgatgggaaagcatgggacagggaaaatgaacgggaccgcttgtttctactgagtaaatgtgcccaatacgacttgctgctgaccaatacaaccttcaggcaggttgataagttcaagagaattggatgaacccgcgatctaaacagtggcatcttattgactatatcatcacctgccaacgtgacagcagagatgtcatcttcacaagggcaatgcgaggcgcagattgctggactgatcacagacatgtccgagcaaaactcaacctctgcatcgtcccacaccaccggagacgcccaaagctaattagactcgcattcaacacagcatgccccctctctagcagacaccgccaagatttccaaaccagcagaagaccactcacaggctcgccaaaagaaaagtggagttaattcaaggaagtggtcaccgaaacagccacatcagtattaggcccaaagaagaggtctcaccaagattggtttgacgaaaatgatgcatcagtgcattcaCTTTTTGACCT------CCG-C-CG----TCTC-ACT-GTCCG--GAC-AAAGACCTTCGAGAAAAT----G---AT-C--TTG--GAGGCAT--TG---TTTGCAGACGACTGTGCCCTCATAGCACACAGAGAAAA-CCACCTGC-A---------A-----GTC---AT-CGTTGACCGGTTCGCAG-----ATGCGG----CCAGAC---TG-TTTGGTATCACAATCAGTCT-CGG-GAAA-A-CAGAGG-TAGT-------TCAGCCAGCCCCGAAC---AC-AACA---TGGCCCCAGCCA---GT-CA--TCACC-ATCGACGG-AGTCCAGATGAA--TTG---TGTGGA--CAGTTTTAAATACC-TGGGCAGC-ACA-ATCTCC-GCA--GATGGATC-------AA-TGG-TCAAAGAGATTTTTTCCA-GGATCCA-GAAAGCCAG--CT--AAGCACT-CGGCAGATTC
gi|12 : ccGCAGACTCCAACAACTCCAAGATG------CTGCTCAGAGCAA-AAAAGGCCATAT-AT-GGTT-TCTCC-A-CG-TCAGGA-ACAGTCCCTCTG-TGC--TCTGTTGACGGTGC------TGTCA-TCATCAAGGACAAAGAGGGAATCATT----GC-TAGGGA---A--GAGCACTTCAGCCAGCTACTTAACCGGCCATCAACT--GTCGACCGGGCTGTGCTACAGCAGATACC---ACAG-AAGT-CTA---CGAAAGAG---GACCTTGA--CC-TTCCCC---CTACTGAAGACGAGGTC-AG-AGCTGCAATAAAACAGATGAAATGTGGCAAAGCCCCAGGGAAGGATGG-ACTCCCCGCAGAAATCTTCAAGGCTC-TGGGAGACATAGCTTTTCAAGCC----TTCTATGACGTCCTCTGCACTATATGGGAGGAAGagagtgaaagtcctgcagcagaaaggaatcatgcttgcgacaaagttgaagatatacagagctgtagtcctct
gi|14 : atAGCTCGGATGCCCTGTAAAGTTTA-CAA-A--CTC--A--------TCAGGTTGTTC-ATGAT--AACATGA-------GG-ATGATGTCTTGTCCGA--CGGTGAGCCTCAAGAGGGCT-TTGCCAT-TCCA-----TGGAGTGAA--ACAAGGCTGCGTGCTTGCT-C-AGTGATGTTCAACCTCTTCT-TATCAC------AGTACTG-CTCGA---GCTATGAT-GAACTAGTACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGA--T------GCG-GGCG----T-TT-AGA-G--CGAAGAC-AAATACCAT---GAAAA-----GCTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGGTCACTGATGGTCa
gi|15 : -A-CAGAGGAT-CCAAGC---TCCACCAG-CCCGAAAC--AC-A--A---C-CAGCCAGCC--CAGTCAC--TCGCCAATCGACGGAAGTCCAGCTGAA--ATAGTCCGTGG----AATTTTAAAT----T--GC--C-ACATCTCTCC-GCA--GATGGATC-------AC-TGGAAAAAAGAGATCATT-CCA--GATCCA-GAAAGCAA----C--AAAGATC-GGCCAGAttcggtaagttcgtatgt
gi|16 : CAGACTCCAATAACACCAAGATGGCTTTGCTTTTCAGTGCAAATAAAGGTCATATTACCGG-TTCCCTC-AACG-TCATGTCACAGCTCCTCTGT-GCC-TCTGCTGACGGTG-C-TGC-CATCATgtgcaacagtcctacagcagataggaatcatgcttgcgacaagctgaagataataca
gi|18 : tatgcCAGTCTGCACTTGAGCGAATTCCTCAACAGCCAGT-C-AT--C-AAAGAGATAGA----GAACCC-TCCATC---T----ATGGGTGACCTCAAAAAG--Gcaa
gi|2 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGC-CCAA-AATGCACATATTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GG-G-CCTTC-A-TAATCTGGC-TCTGTC---CTGTTGCTATCTGTAGACGGAGCCATGCTCATCATTCATCAAGGACA---AGGCTATCA-T--CAAC-GAGAGATTTATGGAGCACTTCAGCCAACTTCTCAACCGCCCGTC--CTTGGTAGACCAGTTTGTACTTGAACGAATCCCTCAACAGCCAGT-C-A---CTGATGAGCTAGA---TAA--CC-TTCACC---C----ATGGATGAACTCAAGAAG--GCCACCAAGCAGATGGCATGTGGGAAAGTTTCGGGCAAGGACGGCAAT-CCAGCGGAGGTGTACAAAACACTT-AGCAACAAGGCCTTACATGCA----TTCCA-GA-GTCTTGACCAATGTTTGGGAAGAGGAAGAAATGCCTGC-TGATATCTAAGACGCAGCGATAGTCGCCCTGAACATGAAGTAG-GGCT----ATTG---CACAAACTGTT----GAAACTATAGGGGTATATCACTGCTTTCCATTGC----------TCCTTGCTCGTATCATCCTGAACAGGCTAATCTCATCCGCTA-CAGAGGAAAATTTCACC-GAGTCTTGATG-CGCTTCCGCTCC-AGTCGAA--GCGCA--GTGGACATGATCTTCTTTGGAAGACAGGTCCAGGAGAAATAACTTGAGCAAAACATGAACCACTGCCGAGTCTTCAAAGACTGCACAAAGGCTTTAAACACTGTCAACAGAGAAG--------------TTCGGGATGCTCGGATGCCCTGAAAAGTTCA-CAACA--CTCTGAGTC--TCATCAGGCTGTTCCATGAT--GACATGAC------GG-GTGCGGTTCTGTCTGA--CGGTGAGCCATCGGAGGGCT-TTGCAAT-CTCAA---ATGGAGTGAA--ACAAGGTTGTGTGCTTGTC-CCCGTGCTGTTCAATTTCTTTT-T--CAAC---CAAGTACTG-CTGCA--CGTTGTGCCAGGCCTAG-ACCTAGGTGTCCACA-TCACATACCGG--CTGGACGG---CTCACTGTTTGACCT------GCT-G-CA----TCTT-ACT-G--TGAAGAC-AAA-ACCAT---GAAAAG----GTTCATAC--TTC--AAGCC-C--TA---CTTGCCGGTGACTGTGCCCTGATGGCCCAC-AGGAGGA-TCACATGT-G---------A-----A-C---A--CATT------TTC-T-G-----AAGCAT----CCAAGA---TG-ACCGGTCTGACAATTATTCT-CGA-G-AA-A-CAGAAG-T-CC-------TCCTTCAG-CCCGCACCTGAC-AGTA---C-TCCCCAGTCA-CCAT-GCT-TCGCC-ATCGACGA-CACACGGATGAA--GAA---CGTCGATGCA--TTCAAGTACT-TGGGCAGC-A-------CCAGC--------A-C-------AC-TGG-ACAAAGAGATTGCAGCCA-AGATCCA-GATAGCCAG--TC--AAGCACT-GGGCAAACTCtc
gi|3 : CTCCTTGCCAGAAAGAACAAAGCATTCATGGAGTGGTAGAATGATCTAG---TCTCT--GCTCCAAGGAAGGATAGGTT-GAAATCCCTCCAGACTCAGA-C-CAACGCGAGATTAGGAGGGTGCAAAACCAGTGGTGGCGGAAGAAG--TGCAGCGGGC---GGCT-------GATATCAACAACATCAAGCAG------TTCTTCAGCTCCA-TCAAGTCCATCT-TT-GG-C-CCTTC-A-GAAACAGAC-ACCGCAAAACTGTTG---TCAGCAGACGGTACC--GCTC-----TGGTCAAGGACT---AGACAGGCATTTCCAACCGTTGGA---A-GGAGCACTTCAGTCAAACGCTTA----CTCATC-A----GTCGCGCAGTCTGCACTCGACCAGATAGCCCAGCAGCCAATTC-AATCC-AAA---CTAGA---TGA--TCATCCAACTATC----GTGGAT--ACT-GAGAAA--ACAGTCAAGTAGATGAATTGTGGCAAGGACCCTGACATAGATGG-AGTACCCGCAGAATTGTACAGAGTGC-T---CGACAAAGACTCAC-TGCAGGCTTTCCATGAAGTTCTTACTAACATCTAA----AGGTTGA--TGTATACAGGATTTCTTGGATGTCACCATAGTCGCACCGTACAAGAA-CAGTGGCT-----CT------CAAACTGACAGTGGGAACTACAGAGGCATTTCACTGCTTTCAATAGCC--GGCAAAATCCGAGCACGCATCATCCCGAACAAGCTCACTACGTCCA-TACCCGAACAGAACCTC-CCAGAATCCCAATACAGTTTCTGTCC----T-GAAAGGCCCACCATTCACATGATCTTCACCGTGAGGCAAATACAAGAGAAGTGATTCGAGC------T---CTACT----AGTCAT---AGACCGGACGAAGGCGTTCGATACGGTCAACAGAGAAGCACTGTGGGTCATTCTTGGTAAACTAGGCTGCTCGAGGAAGTTCATCAA-A--CTT--A--TAAT-AT----CTGTTTCATAAT--GACCCGAC------AG-GAGA-GTACTGTCAGA--TGGATGTCCTTCGGAG----------------AA---AT----T-AA--ATAAGGTTGTGT-CCTGTG-TCAGTGCTGTTCAACCTCTTTT-T--CACC---CAGGTGTTG-CTACA--TGTT
gi|4 : agaaatggaactagtccaaggacattgtgaagtagtcagccgaaacagtactgggaccaaacaatcgcacatatcaagactagttcaatgaaaatgacagcgctgtcgaaaacCTCAGGAAGCTCGGATGCCCTGTAAAGTTTA-CAACA--CTC--A--------TCAGGTTGTTC-ATGAT--AACATGAC------GG-ATGATGTTCTGTCCGA--CGGTGAGCC-TCAGAGGGCT-TTGCCAT-CTCCA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCAGTGCTGTTCAACCTCTTCT-T--TACC---CAAGTACTG-CTTCA--GGCTATGATGAACCTAG-ACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-AGA-G--CGAAGAC-AAATACCAT---GAAAAA----GCTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGTGCACTGATGGTCCACAAGGAGAA-TCATC--C-T---------A-----ATC---A--GACT------ATT-G-GGGGAAAATTAT----CC--GA---TGCATAGGTCTGGCAATTAGTCT-CGGAA-AA-A-CAGCAG-T-CC-------TCCTTCAG-CTTGAACCTGAC-AGTA---A-CCCCCAGCCA-CCAT-GCA-ACACC-ATCGAC-G-CACACAGCTGAA--GAA---CGTCGATGCA--TTGAAGTACT-TTGGCAGC-GCC-ATCTCCAGCGATA--GCA-C-------TC-TGG-ACAAAGAGATTGTAGCCA-GGATCCA-GAAAGCCAG---CAAAAGCACA-CGGCAACCTC
gi|5 : cACTTAA-ACATTGATATATG---TCCGCTATCGC--CTGGACGG---TTCATTGTTCGACCT------TCG-C-CG----TCTC-ACA-A--CTAAAAC-AGA-GACAT---TAAAAAAACTGCTCAT-C--T----AAGTT-T--TG---TTTGCTGATGACTGTGCCCTGATGGCCCACAAAGAGTA-CAACCTGCAG---------ACGATCGTCGATA--AGTT------CTC-C-G-----TGGCGA----CCAAGC---TG-TTTGGTCTTACAATCAGTGT-GGG-G-AAGA-CCGAAG-T-TC-------TCCTCCAG-CCTGCA-CTGATGAGCG---C-CCCACAGCCG-CCGT-GCATTTACC-ATCGACGA-TGTTCAGCTGAA--GAA---CGTAGACGC--CTTTAAGTACC-TATGAAGT-ACC-ATCTTTAGCA--AC-GGC-C-------TCTTAG-ATTAGGAAATAGCAGCCC-GAATCCT-GAAAGCCAG--TC--CGGCAAT-GGAAAGACTcacaatcaaagtcttgcagcataaggacattctcctcagaaccaaactaaaggtatgcaatgctgtcgtcctctcgttactgctctatggctgtgaaaccggaccctctaccgcagacatatgaagaagatggaacaattccatacgcactctttgtgtgcaatcatgcaaatacgttagcaggaccgcatcactaaccaagaaatcctggacagagcggataccactactagcgttgaagccaaaatcatccaagctcaacttcgataatctggccatgttatccgtatggaggagtttagaattccatgaaagtttttctatggggagctagagtctggcagtgtcgtccgaaaaaagagtataaagacaacctcaaaaccagcctcaaatggacaggccttgaacctaggcagatcgaatctg
gi|6 : CTGTACAAGAA-CAAAGGCTGAAAACTGACACACAGACTGA------AAACTATAGGAGTATATCCTTACTTTCCATCGCCTGG--AAAATCCTTGCTCGTATCATCCGCAACAGGCTAATTTCATCTATTGC-AGAGGAAAACTTC-CC-GGGTCGCAGTGCCGCTTCCGCCCCCAGT-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGAGAAACATTGTGGATCATTCTCAGGAACCTCAGATGCCCTGCAAAGTTTA-CAACA--TTC--A--------TCGGACTGTTCCGTGAT--GATATGAC------GG-GCGAAGTTCTGTCTGA--CAGCAAGCCCTCAGAGGGCT-TTGCCAT-CTCCA---ATTGAGTGAC--GCAAAGCTGTGTGATTGCT-CCCGTACTGTTTAA-TTCTTCT-T--TACC---CAAGTACTG-CTTCA--CGCTGTGAGAGACCTAG-ACCATGGTTTCTACA-TCAGTTACCAG--CTTGACGG---CTCATAGTTTAACCT------GCG-G-TG----TCTT-ATT-T--CCAAGATGAAG-ACCAT---GCAAAG----GCTCATAC--TTG--AAGCC-C--TA---TTTGTCGATGACTGCGCACTGATGGTCCTCAAGGAGAA-TCATCTAC-AGCCTATTGTA-----GAC---A--AGTT------TTC-C-G-----AAGCAT----Cttgctctggaccagagtgttgaaacacaaagacatccgattgtccattaaactcaaaagtgtacaatgcagttgtggtctcttcgctgctgtacggatgtgagacatggaccctctatcgcaagtacatcaagcttttagagcaactccacatgcactctctccgccacatcttgcatatttactggtaggacagaaattccatcctggaggtacacgacacagcggaccctacaaacattgaggcaaaggtgctttgggcacagttacgctggacttgccacatgagccacataaatgattccaggatatccagacaactgttgggctcaacagttgacgggtagtcgcagtcgggtccgaccaaagaagaggtacaaggacaatggcaaggcctacttgtaagtagaccgactttccaccga
gi|8 : cAAATTCA-CCACAGGCTC--A--T--T-AACGGCCTCTTCCATGACAGGACATGACTGGACAGGTGTGCGGTTTTGTT-GATACGGAGAACACTTAAACACCTGTTGTTATACTCATTTTACGGAGTAGAGGAGAAGGATGC-TGTTTGCCGCCTGTGCTCTTCAACCG-TTCTAT--CACGGAGCAGGTTCTAACTCCATGCGCT-TGAAAGATC-GG-CCGTAGGTTTACGTAATCAGTTAACTGATCTGGAGGGATTCTT-CTTTTTGACCTCGCGCTGCGTG-CGATTATCTTCACTTGTCCG--GAC-AAAGACCTTCGAGAAAAT----G---ATGCGTTTGCCGAGCG-CATTAAAGTTTGCAGACGACTGTGCCCTCATAGCACACA-GAAGAAACCACCTTT-G---------A-----GTC---AATCGTTGACCGTTTT-C-G-----CAGCATGCGGCCAGGAGGCTGTATTGGTATCACAATCAGTCTGCGG-G-AA-AACAGAGG-T-GTAGGGTGTTCAGCCAG-CCCGA-CACAAC-AACATAGC-CTCTCTGCCAGTCAT--C--TAACC-ATCGACGG-AGTCCAGATGAATTGT----TGTGGA--CAGTTTTAAATACCTTGGGCAGCTACA-ATCTCC-GCA--A--TGA-TGGAAATAAT-TGG-TCAAAGAGATTTTTTCCAGGGATCCATGAAAGCCAGCTTA--AAGCACTCGGGCAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagcctttgacagtaaccctagtctcc
gi|9 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGC-CCAA-AATGCACATATTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GG-G-CCTTC-A-attc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GTTCACCCGAACAACAAAGACTGCTACAGCAAACCAGGCGGAGGAAATCCATCGAGGGTTCAACGGCTGGTGAGGCGCTGCAGCAAGGCATTAATGAATGCTTAGGGTATTATAGAACACAAAAGACATCATGACCACCCACTGCGGCCAAGGAGGTTACCAGCCGTGACGATTCTCTGTACCAATTGATCAGGGCTTCTGCAGCAGAGAGAGTGGGGTCCCTGTGCAACGGCTTTTCCACTTTAATATCCTTCTCACACAGGATGCGTTGTACGTTCTATAAAGGTCCTGTGGCGACGGGGGATTGGCGAAAGCAACAGGTGGAGGTGACCACTGGGAGTTGTAGTCAGGAACCTGCACGTGGACAGATGTGGTCGCCCCTTCTCTGTACTCAGGGCAGCAGAGAAGTCCGGTAACATCTTTAGGATAGCACTGCTCACCCTAGTAAGGGAGGGACCTAGAAAAGGTGGTCTAAACATTGCCTGTCCTACATTATTTGGCCAATAAGCCGTGGCTGACAGATCTTCCATTCATGCACATGCGGTCGAAGCCAAAGAAGAATAAGGAAACTCTTATGAGGAGCATGGAATGTTCGTACACTTATGGGGCCGAAAACATCACAACAAGACCCCAAAGTAGAACAGTGTATGTTCACAGCAAGACCCCAAAATAGAACAGTAGACACT
Unaligned ( gi|10 ): CTCACTCGAACAACTTGAAAGACTGCTACGGCAGCCCAGGCGGAAGAACCCCAATATCTGGGTCCAACGACTGGGAAGGCGATGCAGCAAGACATTGTGGAATGCTCAGGGCGTAACNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCGTGACAGGAGTATAAAAGACCGCCACGGGCCATCCACTGCAGCCAGAAGAGGTATCAGGCTAATGGTTCTCTTTGCCATTGGGTCAAGGTTTCTTCTGCCGAGAGAGTGGGATTGCCCCCGTGCAACGGTTTCACCTTAATCAAAATCACGCCACAGGTGTCTATAGGACTCAGCTTTCGACCACAATAACGAAGTCTGTGGCAATGGGGGAGTGACAAAGATGGCAGGTGGGAGTAAACACAGGAGTCATTAGTTCACAAGGCCTGCACGTAGGCGCCTTGGACCAGAGGTCGTCGTTTTTCTTTGAACCCAGAG
Unaligned ( gi|13 ): TAATGCTGTTGTCATCTCGTCACTGCTCCATGGCTGTGAAACCTGGACCTTCTACCGCACACACATCAAGCAGCTGCAGAACAGTTCCACACGCGCGCTCTGCGAGCAATCATACGAATACGTTGGCAAGACCAAGTAGTCCTGGACAGAGCGGACACCACTAGCGTTGAAACCAACACCATCCAAGCTCAGTTTTGATGGTCAGTCCACGTTATCCGCATAGAGGAATTCAGAATTCCACGGCAGATTTTCTATGAGTATTTAGCGTCCAGCAGACGCAAAAAGAGGTATAAAGACAACCTCAAAGTCAACAATGAACAATCCCTCAACCTAGGCAGCTAGAATCTGCA
Unaligned ( gi|17 ): CCAGGATCACAGAAGCCAAACAAAGCTATCCCAGAGTGAACAGTTTCCTCAGGAGATAGGAAATCATGCTTGCGACAAAGGCTAAGATATACATGTC
Unaligned ( gi|19 ): CTCTCTCACTCTATATGGCGTGTAGACATGGACCCATCAAAACTGGAGCAATTCCACA
Alignments
lowQualScore : 111 111111 11 111 2222 111111 111 2222 222222 333333333 222 222 1 333333 444444 1 3333333 2222 11 1 33333333 11 11 1 2 2222 2222 2 11 11 1 2 55555555555 44444 444444 11 11 1 1 222222 11 11 3333333333 1111 111 44444444444444 111111 1111 1111 111 11111 111 111111 1111 11111 2 222 11111 111 666666666666666666666666666666666666666666666666 1111 1111 11 3333333333 1111 11111 22222 11 22222222 222222 1 1 555555555555555555555 222222
lowQualScore : 0 1 777 777777 55 8 1 88 3 0 1 777 0 11 1 0 2 0 9 2 2 3333 1 22 999999 1 1 1 6 1 0 1 6 6 444 6 1111 99 1 666 888888 1 000000000 9 0 333 7 555 3 444444 1 7 0 444444 4 0 1 7 2 0 8888888 2 8 0000 33 0 0 22222222 2 0 33 3 33 1 3 0 3 1 6 0 1 3 9999 7 8888 7 6 1 1 999 22 88 1 66 1 1 2 1 1 0 3 6 22222222222 00000 3 111111 3 0 22 33 3 3 1 0 6 111111 22 1 22 22 1 1 1 1111111111 6666 1 555 1 1 2 1 999 3 1 6 6 99 00000000000000 1 6 99 999999 6 7 7 99 6 7 0 1 6 1 6 5555 2 1 99 6 1 1 6 99 4444 6 1 444 6 44 6 1 1 77777 1 77777 2 111 666666 888 2222 5 88888 5 5 2 000 88888 6 7 8888888 8888 000 1 0 1 6 1 999999999999999999999999999999999999999999999999 0 4444 22 4444 77 1 8 999 6 6 6 8888888888 1 6 6666 6 3 55555 999 88888 0 6 11 1 1 00000000 1 777777 6 5 6 1 6 1 888888888888888888888 6 1 77 77 6 000000 6
lowQualScore : . . ... ...... .. . . .. . . . ... . .. . . . . . . . .... . .. ...... . . . . . . . . . ... . .... .. . ... ...... . ......... . . ... . ... . ...... . . . ...... . . . . . . ....... . . .... .. . . ........ . . .. . .. . . . . . . . . . .... . .... . . . . ... .. .. . .. . . . . . . . . ........... ..... . ...... . . .. .. . . . . . ...... .. . .. .. . . . .......... .... . ... . . . . ... . . . . .. .............. . . .. ...... . . . .. . . . . . . . .... . . .. . . . . .. .... . . ... . .. . . . ..... . ..... . ... ...... ... .... . ..... . . . ... ..... . . ....... .... ... . . . . . ................................................ . .... .. .... .. . . ... . . . .......... . . .... . . ..... ... ..... . . .. . . ........ . ...... . . . . . . ..................... . . .. .. . ...... .
lowQualScore : 2 2 555 222222 88 8 0 00 2 2 0 888 8 88 0 2 5 2 2 5 5 5555 0 00 222222 5 0 0 7 0 7 0 7 7 888 7 7777 00 0 000 000000 4 555555555 2 7 333 3 000 3 333333 0 3 7 777777 2 2 0 0 5 0 5555555 5 8 8888 88 0 2 88888888 5 8 00 2 88 0 7 7 3 0 7 7 0 7 7777 3 3333 3 7 0 0 333 00 55 0 55 0 0 5 0 0 7 3 7 00000000000 33333 7 777777 7 7 77 33 3 3 0 7 7 777777 77 0 33 00 0 0 0 3333333333 3333 0 000 0 0 0 0 333 7 0 7 7 22 88888888888888 0 7 22 222222 7 5 8 22 3 8 7 0 7 0 7 2222 5 0 22 7 0 0 7 22 2222 7 0 333 4 88 7 5 0 00000 0 33333 5 777 444444 666 1111 7 33333 0 7 9 000 77777 6 1 7777777 1111 000 4 7 7 7 0 555555555555555555555555555555555555555555555555 7 2222 22 6666 44 0 0 222 7 7 7 8888888888 0 7 5555 7 7 22222 333 55555 7 7 88 0 0 33333333 0 000000 7 2 7 2 7 3 333333333333333333333 7 0 77 77 7 888888 7
consensus : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAATGCACANATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTC-A-CGATCAGGN-ACAGCCCCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CAAC-GAGGGA---A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAC----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGT-GAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A---T--TA-CGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACN-G--CGAAGAC-AAA-ACCAT---GAAAAN----GCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-G-AA-A-CAGAGG-T-CC-------TCCNCCAG-CCCGAACCCGAC-AGCA---C-CCCCCAGCCA-CCGT-GC--TCGCC-ATCGACGG-CGTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-AC-ATCTC-CAGCA--A--GGA-C-------AC-TGG-ACAAAGAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
Reference ( family-2329 ) : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAATGCACANATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTC-A-CGATCAGGN-ACAGCCCCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CAAC-GAGGGA---A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAC----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGT-GAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A---T--TATCGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACN-G--CGAAGAC-AAA-ACCAT---GAAAAN----GCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-G-AA-A-CAGAGG-T-CC-------TCCNCCAG-CCCGAACCCGAC-AGCA---C-CCCCCAGCCA-CCGT-GC--TCGCC-ATCGACGG-CGTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-ACAATCTC-CAGCA--A--GGA-C-------AC-TGG-ACAAAGAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
gi|1 : CTGTTAGACGAGAAGAGGAAAGCTTTTATTGATTGGCAAAACCACCCAAACTGCTC----CTCCAGGCGTG-ACAGATACAAAG--ACTACAAAGCCAGAACACAGCGGGAGTTCCGCAACATGCAGAATCAGTGGTGGAAAAGAAAGGCTGAAG---TGCAA--CTATATGCAGACTCCAACAACTCCAAGATG------CTGTTCAGTGCAA-TAAAGGCCATAT-AT-GT-T-CCCTCAA-CG-TCAGGA-ACAGCCCCTCTGT--AT-TCTGCTGA
gi|11 : taaccactgggagtcattagtcacaaacctgcacataggcggctttgggaccagtggtcgtcgtttcttcgaaccaagggcagcggaaaacttcggcagtatcctaggcgactgagcagccttttcaggagcgcactgctcaccctaataaaggagggggctagaaaaggtgccccaaaaaaatgcctgccctacccaatctggccagctaaccgcggctggcaagatctacccatcctgcggtcgaccaaaacagaaaaagaaaatcattgttggaacatggaacgtacgtaaccttttggatcgagacgacgttgcaagacttcggagaaggacggctcttgtagctaaagaactggcaaggtataacattgacattgccgcaatcagtgaaactcggcagtgagtgaatataccttcttctggaagggtaaagcccagaacgaagacaaaatacatggtattgactctgccatcaagacaaaccaaaaaaaaaaacacaaaaaaaaaacaacctccgacagattccgagcctccccactgacaccaacgagaaactcatgaagcttcgtatccctatcagcaacaaccgcttctttaccatcattaccgtctatgccccgactctgactagcacagaggaagtgaaagagcagttttatgttgacctagatgctctgttgcgtactacacccatcaatgacaagcttttagtgttgggtgatttcaacgctagggacagcaaccagtggaaaggggtgatgggaaagcatgggacagggaaaatgaacgggaccgcttgtttctactgagtaaatgtgcccaatacgacttgctgctgaccaatacaaccttcaggcaggttgataagttcaagagaattggatgaacccgcgatctaaacagtggcatcttattgactatatcatcacctgccaacgtgacagcagagatgtcatcttcacaagggcaatgcgaggcgcagattgctggactgatcacagacatgtccgagcaaaactcaacctctgcatcgtcccacaccaccggagacgcccaaagctaattagactcgcattcaacacagcatgccccctctctagcagacaccgccaagatttccaaaccagcagaagaccactcacaggctcgccaaaagaaaagtggagttaattcaaggaagtggtcaccgaaacagccacatcagtattaggcccaaagaagaggtctcaccaagattggtttgacgaaaatgatgcatcagtgcattcaCTTTTTGACCT------CCG-C-CG----TCTC-ACT-GTCCG--GAC-AAAGACCTTCGAGAAAAT----G---AT-C--TTG--GAGGCAT--TG---TTTGCAGACGACTGTGCCCTCATAGCACACAGAGAAAA-CCACCTGC-A---------A-----GTC---AT-CGTTGACCGGTTCGCAG-----ATGCGG----CCAGAC---TG-TTTGGTATCACAATCAGTCT-CGG-GAAA-A-CAGAGG-TAGT-------TCAGCCAGCCCCGAAC---AC-AACA---TGGCCCCAGCCA---GT-CA--TCACC-ATCGACGG-AGTCCAGATGAA--TTG---TGTGGA--CAGTTTTAAATACC-TGGGCAGC-ACAATCTC-C-GCA--GATGGATC-------AA-TGG-TCAAAGAGATTTTTTCCA-GGATCCA-GAAAGCCAG--CT--AAGCACT-CGGCAGATTC
gi|12 : ccGCAGACTCCAACAACTCCAAGATG------CTGCTCAGAGCAA-AAAAGGCCATAT-AT-GGTT-TCTCC-A-CG-TCAGGA-ACAGTCCCTCTG-TGC--TCTGTTGACGGTGC------TGTCA-TCATCAAGGACAAAGAGGGAATCATT----GC-TAGGGA---A--GAGCACTTCAGCCAGCTACTTAACCGGCCATCAACT--GTCGACCGGGCTGTGCTACAGCAGATACC---ACAG-AAGT-CTA---CGAAAGAG---GACCTTGA--CC-TTCCCC---CTACTGAAGACGAGGTC-AG-AGCTGCAATAAAACAGATGAAATGTGGCAAAGCCCCAGGGAAGGATGG-ACTCCCCGCAGAAATCTTCAAGGCTC-TGGGAGACATAGCTTTTCAAGCC----TTCTATGACGTCCTCTGCACTATATGGGAGGAAGagagtgaaagtcctgcagcagaaaggaatcatgcttgcgacaaagttgaagatatacagagctgtagtcctct
gi|14 : atAGCTCGGATGCCCTGTAAAGTTTA-CAA-A--CTC--A---T-----CAGGTTGTTC-ATGAT--AACATGA-------GG-ATGATGTCTTGTCCGA--CGGTGAGCCTCAAGAGGGCT-TTGCCAT-TCCA-----TGGAGTGAA--ACAAGGCTGCGTGCTTGCT-C-AGTGATGTTCAACCTCTTCT-TATCAC------AGTACTG-CTCGA---GCTATGAT-GAACTAGTACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGA--T------GCG-GGCG----T-TT-AGA-G--CGAAGAC-AAATACCAT---GAAAA-----GCTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGGTCACTGATGGTCa
gi|15 : -A-CAGAGGAT-CCAAGC---TCCACCAG-CCCGAAAC--AC-A--A---C-CAGCCAGCC--CAGTCAC--TCGCCAATCGACGGAAGTCCAGCTGAA--ATAGTCCGTGG----AATTTTAAAT----T--GC--C-AC-ATCTCTCCGCA--GATGGATC-------AC-TGGAAAAAAGAGATCATT-CCA--GATCCA-GAAAGCAA----C--AAAGATC-GGCCAGAttcggtaagttcgtatgt
gi|16 : CAGACTCCAATAACACCAAGATGGCTTTGCTTTTCAGTGCAAATAAAGGTCATATTACCGG-TTCCCTC-AACG-TCATGTCACAGCTCCTCTGT-GCC-TCTGCTGACGGTG-C-TGC-CATCATgtgcaacagtcctacagcagataggaatcatgcttgcgacaagctgaagataataca
gi|18 : tatgcCAGTCTGCACTTGAGCGAATTCCTCAACAGCCAGT-C-AT--C-AAAGAGATAGA----GAACCC-TCCATC---T----ATGGGTGACCTCAAAAAG--Gcaa
gi|2 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGC-CCAA-AATGCACATATTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GG-G-CCTTC-A-TAATCTGGC-TCTGTC---CTGTTGCTATCTGTAGACGGAGCCATGCTCATCATTCATCAAGGACA---AGGCTATCA-T--CAAC-GAGAGATTTATGGAGCACTTCAGCCAACTTCTCAACCGCCCGTC--CTTGGTAGACCAGTTTGTACTTGAACGAATCCCTCAACAGCCAGT-C-A---CTGATGAGCTAGA---TAA--CC-TTCACC---C----ATGGATGAACTCAAGAAG--GCCACCAAGCAGATGGCATGTGGGAAAGTTTCGGGCAAGGACGGCAAT-CCAGCGGAGGTGTACAAAACACTT-AGCAACAAGGCCTTACATGCA----TTCCA-GA-GTCTTGACCAATGTTTGGGAAGAGGAAGAAATGCCTGC-TGATATCTAAGACGCAGCGATAGTCGCCCTGAACATGAAGTAG-GGCT----ATTG---CACAAACTGTT----GAAACTATAGGGGTATATCACTGCTTTCCATTGC----------TCCTTGCTCGTATCATCCTGAACAGGCTAATCTCATCCGCTA-CAGAGGAAAATTTCACC-GAGTCTTGATG-CGCTTCCGCTCC-AGTCGAA--GCGCA--GTGGACATGATCTTCTTTGGAAGACAGGTCCAGGAGAAATAACTTGAGCAAAACATGAACCACTGCCGAGTCTTCAAAGACTGCACAAAGGCTTTAAACACTGTCAACAGAGAAG--------------TTCGGGATGCTCGGATGCCCTGAAAAGTTCA-CAACA--CTCTGAGTCT--CATCAGGCTGTTCCATGAT--GACATGAC------GG-GTGCGGTTCTGTCTGA--CGGTGAGCCATCGGAGGGCT-TTGCAAT-CTCAA---ATGGAGTGAA--ACAAGGTTGTGTGCTTGTC-CCCGTGCTGTTCAATTTCTTTT-T--CAAC---CAAGTACTG-CTGCA--CGTTGTGCCAGGCCTAG-ACCTAGGTGTCCACA-TCACATACCGG--CTGGACGG---CTCACTGTTTGACCT------GCT-G-CA----TCTT-ACT-G--TGAAGAC-AAA-ACCAT---GAAAAG----GTTCATAC--TTC--AAGCC-C--TA---CTTGCCGGTGACTGTGCCCTGATGGCCCAC-AGGAGGA-TCACATGT-G---------A-----A-C---A--CATT------TTC-T-G-----AAGCAT----CCAAGA---TG-ACCGGTCTGACAATTATTCT-CGA-G-AA-A-CAGAAG-T-CC-------TCCTTCAG-CCCGCACCTGAC-AGTA---C-TCCCCAGTCA-CCAT-GCT-TCGCC-ATCGACGA-CACACGGATGAA--GAA---CGTCGATGCA--TTCAAGTACT-TGGGCAGC-A------C-CAGC--------A-C-------AC-TGG-ACAAAGAGATTGCAGCCA-AGATCCA-GATAGCCAG--TC--AAGCACT-GGGCAAACTCtc
gi|3 : CTCCTTGCCAGAAAGAACAAAGCATTCATGGAGTGGTAGAATGATCTAG---TCTCT--GCTCCAAGGAAGGATAGGTT-GAAATCCCTCCAGACTCAGA-C-CAACGCGAGATTAGGAGGGTGCAAAACCAGTGGTGGCGGAAGAAG--TGCAGCGGGC---GGCT-------GATATCAACAACATCAAGCAG------TTCTTCAGCTCCA-TCAAGTCCATCT-TT-GG-C-CCTTC-A-GAAACAGAC-ACCGCAAAACTGTTG---TCAGCAGACGGTACC--GCTC-----TGGTCAAGGACT---AGACAGGCATTTCCAACCGTTGGA---A-GGAGCACTTCAGTCAAACGCTTA----CTCATC-A----GTCGCGCAGTCTGCACTCGACCAGATAGCCCAGCAGCCAATTC-AATCC-AAA---CTAGA---TGA--TCATCCAACTATC----GTGGAT--ACT-GAGAAA--ACAGTCAAGTAGATGAATTGTGGCAAGGACCCTGACATAGATGG-AGTACCCGCAGAATTGTACAGAGTGC-T---CGACAAAGACTCAC-TGCAGGCTTTCCATGAAGTTCTTACTAACATCTAA----AGGTTGA--TGTATACAGGATTTCTTGGATGTCACCATAGTCGCACCGTACAAGAA-CAGTGGCT-----CT------CAAACTGACAGTGGGAACTACAGAGGCATTTCACTGCTTTCAATAGCC--GGCAAAATCCGAGCACGCATCATCCCGAACAAGCTCACTACGTCCA-TACCCGAACAGAACCTC-CCAGAATCCCAATACAGTTTCTGTCC----T-GAAAGGCCCACCATTCACATGATCTTCACCGTGAGGCAAATACAAGAGAAGTGATTCGAGC------T---CTACT----AGTCAT---AGACCGGACGAAGGCGTTCGATACGGTCAACAGAGAAGCACTGTGGGTCATTCTTGGTAAACTAGGCTGCTCGAGGAAGTTCATCAA-A--CTT--A---TAATAT----CTGTTTCATAAT--GACCCGAC------AG-GAGA-GTACTGTCAGA--TGGATGTCCTTCGGAG----------------AA---AT----T-AA--ATAAGGTTGTGT-CCTGTG-TCAGTGCTGTTCAACCTCTTTT-T--CACC---CAGGTGTTG-CTACA--TGTT
gi|4 : agaaatggaactagtccaaggacattgtgaagtagtcagccgaaacagtactgggaccaaacaatcgcacatatcaagactagttcaatgaaaatgacagcgctgtcgaaaacCTCAGGAAGCTCGGATGCCCTGTAAAGTTTA-CAACA--CTC--A---T-----CAGGTTGTTC-ATGAT--AACATGAC------GG-ATGATGTTCTGTCCGA--CGGTGAGCC-TCAGAGGGCT-TTGCCAT-CTCCA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCAGTGCTGTTCAACCTCTTCT-T--TACC---CAAGTACTG-CTTCA--GGCTATGATGAACCTAG-ACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-AGA-G--CGAAGAC-AAATACCAT---GAAAAA----GCTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGTGCACTGATGGTCCACAAGGAGAA-TCATC--C-T---------A-----ATC---A--GACT------ATT-G-GGGGAAAATTAT----CC--GA---TGCATAGGTCTGGCAATTAGTCT-CGGAA-AA-A-CAGCAG-T-CC-------TCCTTCAG-CTTGAACCTGAC-AGTA---A-CCCCCAGCCA-CCAT-GCA-ACACC-ATCGAC-G-CACACAGCTGAA--GAA---CGTCGATGCA--TTGAAGTACT-TTGGCAGC-GCCATCTC-CAGCGATA--GCA-C-------TC-TGG-ACAAAGAGATTGTAGCCA-GGATCCA-GAAAGCCAG---CAAAAGCACA-CGGCAACCTC
gi|5 : cACTTAA-ACATTGATATATG---TCCGCTATCGC--CTGGACGG---TTCATTGTTCGACCT------TCG-C-CG----TCTC-ACA-A--CTAAAAC-AGA-GACAT---TAAAAAAACTGCTCAT-C--T----AAGTT-T--TG---TTTGCTGATGACTGTGCCCTGATGGCCCACAAAGAGTA-CAACCTGCAG---------ACGATCGTCGATA--AGTT------CTC-C-G-----TGGCGA----CCAAGC---TG-TTTGGTCTTACAATCAGTGT-GGG-G-AAGA-CCGAAG-T-TC-------TCCTCCAG-CCTGCA-CTGATGAGCG---C-CCCACAGCCG-CCGT-GCATTTACC-ATCGACGA-TGTTCAGCTGAA--GAA---CGTAGACGC--CTTTAAGTACC-TATGAAGT-ACCATCTT-TAGCA--AC-GGC-C-------TCTTAG-ATTAGGAAATAGCAGCCC-GAATCCT-GAAAGCCAG--TC--CGGCAAT-GGAAAGACTcacaatcaaagtcttgcagcataaggacattctcctcagaaccaaactaaaggtatgcaatgctgtcgtcctctcgttactgctctatggctgtgaaaccggaccctctaccgcagacatatgaagaagatggaacaattccatacgcactctttgtgtgcaatcatgcaaatacgttagcaggaccgcatcactaaccaagaaatcctggacagagcggataccactactagcgttgaagccaaaatcatccaagctcaacttcgataatctggccatgttatccgtatggaggagtttagaattccatgaaagtttttctatggggagctagagtctggcagtgtcgtccgaaaaaagagtataaagacaacctcaaaaccagcctcaaatggacaggccttgaacctaggcagatcgaatctg
gi|6 : CTGTACAAGAA-CAAAGGCTGAAAACTGACACACAGACTGA------AAACTATAGGAGTATATCCTTACTTTCCATCGCCTGG--AAAATCCTTGCTCGTATCATCCGCAACAGGCTAATTTCATCTATTGC-AGAGGAAAACTTC-CC-GGGTCGCAGTGCCGCTTCCGCCCCCAGT-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGAGAAACATTGTGGATCATTCTCAGGAACCTCAGATGCCCTGCAAAGTTTA-CAACA--TTC--A---T-----CGGACTGTTCCGTGAT--GATATGAC------GG-GCGAAGTTCTGTCTGA--CAGCAAGCCCTCAGAGGGCT-TTGCCAT-CTCCA---ATTGAGTGAC--GCAAAGCTGTGTGATTGCT-CCCGTACTGTTTAA-TTCTTCT-T--TACC---CAAGTACTG-CTTCA--CGCTGTGAGAGACCTAG-ACCATGGTTTCTACA-TCAGTTACCAG--CTTGACGG---CTCATAGTTTAACCT------GCG-G-TG----TCTT-ATT-T--CCAAGATGAAG-ACCAT---GCAAAG----GCTCATAC--TTG--AAGCC-C--TA---TTTGTCGATGACTGCGCACTGATGGTCCTCAAGGAGAA-TCATCTAC-AGCCTATTGTA-----GAC---A--AGTT------TTC-C-G-----AAGCAT----Cttgctctggaccagagtgttgaaacacaaagacatccgattgtccattaaactcaaaagtgtacaatgcagttgtggtctcttcgctgctgtacggatgtgagacatggaccctctatcgcaagtacatcaagcttttagagcaactccacatgcactctctccgccacatcttgcatatttactggtaggacagaaattccatcctggaggtacacgacacagcggaccctacaaacattgaggcaaaggtgctttgggcacagttacgctggacttgccacatgagccacataaatgattccaggatatccagacaactgttgggctcaacagttgacgggtagtcgcagtcgggtccgaccaaagaagaggtacaaggacaatggcaaggcctacttgtaagtagaccgactttccaccga
gi|8 : cAAATTCA-CCACAGGCTC--A---T--TAACGGCCTCTTCCATGACAGGACATGACTGGACAGGTGTGCGGTTTTGTT-GATACGGAGAACACTTAAACACCTGTTGTTATACTCATTTTACGGAGTAGAGGAGAAGGATGC-TGTTTGCCGCCTGTGCTCTTCAACCG-TTCTAT--CACGGAGCAGGTTCTAACTCCATGCGCT-TGAAAGATC-GG-CCGTAGGTTTACGTAATCAGTTAACTGATCTGGAGGGATTCTT-CTTTTTGACCTCGCGCTGCGTG-CGATTATCTTCACTTGTCCG--GAC-AAAGACCTTCGAGAAAAT----G---ATGCGTTTGCCGAGCG-CATTAAAGTTTGCAGACGACTGTGCCCTCATAGCACACA-GAAGAAACCACCTTT-G---------A-----GTC---AATCGTTGACCGTTTT-C-G-----CAGCATGCGGCCAGGAGGCTGTATTGGTATCACAATCAGTCTGCGG-G-AA-AACAGAGG-T-GTAGGGTGTTCAGCCAG-CCCGA-CACAAC-AACATAGC-CTCTCTGCCAGTCAT--C--TAACC-ATCGACGG-AGTCCAGATGAATTGT----TGTGGA--CAGTTTTAAATACCTTGGGCAGCTACAATCTC-C-GCA--A--TGA-TGGAAATAAT-TGG-TCAAAGAGATTTTTTCCAGGGATCCATGAAAGCCAGCTTA--AAGCACTCGGGCAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagcctttgacagtaaccctagtctcc
gi|9 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGC-CCAA-AATGCACATATTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GG-G-CCTTC-A-attc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GTTCACCCGAACAACAAAGACTGCTACAGCAAACCAGGCGGAGGAAATCCATCGAGGGTTCAACGGCTGGTGAGGCGCTGCAGCAAGGCATTAATGAATGCTTAGGGTATTATAGAACACAAAAGACATCATGACCACCCACTGCGGCCAAGGAGGTTACCAGCCGTGACGATTCTCTGTACCAATTGATCAGGGCTTCTGCAGCAGAGAGAGTGGGGTCCCTGTGCAACGGCTTTTCCACTTTAATATCCTTCTCACACAGGATGCGTTGTACGTTCTATAAAGGTCCTGTGGCGACGGGGGATTGGCGAAAGCAACAGGTGGAGGTGACCACTGGGAGTTGTAGTCAGGAACCTGCACGTGGACAGATGTGGTCGCCCCTTCTCTGTACTCAGGGCAGCAGAGAAGTCCGGTAACATCTTTAGGATAGCACTGCTCACCCTAGTAAGGGAGGGACCTAGAAAAGGTGGTCTAAACATTGCCTGTCCTACATTATTTGGCCAATAAGCCGTGGCTGACAGATCTTCCATTCATGCACATGCGGTCGAAGCCAAAGAAGAATAAGGAAACTCTTATGAGGAGCATGGAATGTTCGTACACTTATGGGGCCGAAAACATCACAACAAGACCCCAAAGTAGAACAGTGTATGTTCACAGCAAGACCCCAAAATAGAACAGTAGACACT
Unaligned ( gi|10 ): CTCACTCGAACAACTTGAAAGACTGCTACGGCAGCCCAGGCGGAAGAACCCCAATATCTGGGTCCAACGACTGGGAAGGCGATGCAGCAAGACATTGTGGAATGCTCAGGGCGTAACNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCGTGACAGGAGTATAAAAGACCGCCACGGGCCATCCACTGCAGCCAGAAGAGGTATCAGGCTAATGGTTCTCTTTGCCATTGGGTCAAGGTTTCTTCTGCCGAGAGAGTGGGATTGCCCCCGTGCAACGGTTTCACCTTAATCAAAATCACGCCACAGGTGTCTATAGGACTCAGCTTTCGACCACAATAACGAAGTCTGTGGCAATGGGGGAGTGACAAAGATGGCAGGTGGGAGTAAACACAGGAGTCATTAGTTCACAAGGCCTGCACGTAGGCGCCTTGGACCAGAGGTCGTCGTTTTTCTTTGAACCCAGAG
Unaligned ( gi|13 ): TAATGCTGTTGTCATCTCGTCACTGCTCCATGGCTGTGAAACCTGGACCTTCTACCGCACACACATCAAGCAGCTGCAGAACAGTTCCACACGCGCGCTCTGCGAGCAATCATACGAATACGTTGGCAAGACCAAGTAGTCCTGGACAGAGCGGACACCACTAGCGTTGAAACCAACACCATCCAAGCTCAGTTTTGATGGTCAGTCCACGTTATCCGCATAGAGGAATTCAGAATTCCACGGCAGATTTTCTATGAGTATTTAGCGTCCAGCAGACGCAAAAAGAGGTATAAAGACAACCTCAAAGTCAACAATGAACAATCCCTCAACCTAGGCAGCTAGAATCTGCA
Unaligned ( gi|17 ): CCAGGATCACAGAAGCCAAACAAAGCTATCCCAGAGTGAACAGTTTCCTCAGGAGATAGGAAATCATGCTTGCGACAAAGGCTAAGATATACATGTC
Unaligned ( gi|19 ): CTCTCTCACTCTATATGGCGTGTAGACATGGACCCATCAAAACTGGAGCAATTCCACA
Alignments
lowQualScore : 111 111111 11 111 2222 111111 111 2222 222222 333333333 222 222 1 333333 444444 1 3333333 2222 11 1 33333333 11 11 1 2 2222 2222 2 11 11 1 2 55555555555 44444 444444 11 11 1 1 222222 11 11 3333333333 1111 111 444444444444 111111 1111 1111 111 11111 111 111111 1111 11111 2 222 11111 111 666666666666666666666666666666666666666666666666 1111 1111 11 3333333333 1111 11111 22222 11 22222222 222222 22222 1 555555555555555555555 222222
lowQualScore : 0 1 777 777777 55 8 1 88 3 0 1 777 0 11 1 0 2 0 9 2 2 3333 1 22 999999 1 1 1 6 1 0 1 6 6 444 6 1111 99 1 666 888888 1 000000000 9 0 333 7 555 3 444444 1 7 0 444444 4 0 1 7 2 0 8888888 2 8 0000 33 0 0 22222222 2 0 33 3 33 1 3 0 3 1 6 0 1 3 9999 7 8888 7 6 1 1 999 22 88 1 66 1 1 2 1 1 0 3 6 22222222222 00000 3 111111 3 0 22 33 3 3 1 0 6 111111 22 1 22 22 1 1 1 1111111111 6666 1 555 1 1 2 1 999 3 1 6 6 99 666666666666 6 1 6 99 999999 6 7 7 99 6 7 0 1 6 1 6 5555 2 1 99 6 1 1 6 99 4444 6 1 444 6 44 6 1 1 77777 1 77777 2 111 666666 888 2222 5 88888 5 5 2 000 88888 6 7 8888888 8888 000 1 0 1 6 1 999999999999999999999999999999999999999999999999 0 4444 22 4444 77 1 8 999 6 6 6 8888888888 1 6 6666 6 3 55555 999 88888 0 6 11 1 1 00000000 1 777777 6 5 55555 6 1 888888888888888888888 6 1 77 77 6 000000 6
lowQualScore : . . ... ...... .. . . .. . . . ... . .. . . . . . . . .... . .. ...... . . . . . . . . . ... . .... .. . ... ...... . ......... . . ... . ... . ...... . . . ...... . . . . . . ....... . . .... .. . . ........ . . .. . .. . . . . . . . . . .... . .... . . . . ... .. .. . .. . . . . . . . . ........... ..... . ...... . . .. .. . . . . . ...... .. . .. .. . . . .......... .... . ... . . . . ... . . . . .. ............ . . . .. ...... . . . .. . . . . . . . .... . . .. . . . . .. .... . . ... . .. . . . ..... . ..... . ... ...... ... .... . ..... . . . ... ..... . . ....... .... ... . . . . . ................................................ . .... .. .... .. . . ... . . . .......... . . .... . . ..... ... ..... . . .. . . ........ . ...... . . ..... . . ..................... . . .. .. . ...... .
lowQualScore : 2 2 555 222222 88 8 0 00 2 2 0 888 8 88 0 2 5 2 2 5 5 5555 0 00 222222 5 0 0 7 0 7 0 7 7 888 7 7777 00 0 000 000000 4 555555555 2 7 333 3 000 3 333333 0 3 7 777777 2 2 0 0 5 0 5555555 5 8 8888 88 0 2 88888888 5 8 00 2 88 0 7 7 3 0 7 7 0 7 7777 3 3333 3 7 0 0 333 00 55 0 55 0 0 5 0 0 7 3 7 00000000000 33333 7 777777 7 7 77 33 3 3 0 7 7 777777 77 0 33 00 0 0 0 3333333333 3333 0 000 0 0 0 0 333 7 0 7 7 22 333333333333 3 0 7 22 222222 7 5 8 22 3 8 7 0 7 0 7 2222 5 0 22 7 0 0 7 22 2222 7 0 333 4 88 7 5 0 00000 0 33333 5 777 444444 666 1111 7 33333 0 7 9 000 77777 6 1 7777777 1111 000 4 7 7 7 0 555555555555555555555555555555555555555555555555 7 2222 22 6666 44 0 0 222 7 7 7 8888888888 0 7 5555 7 7 22222 333 55555 7 7 88 0 0 33333333 0 000000 7 2 22222 7 3 333333333333333333333 7 0 77 77 7 888888 7
consensus : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAATGCACANATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTC-A-CGATCAGGN-ACAGCCCCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CAAC-GAGGGA---A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAC----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGT-GAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A---T--TA-CGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACN-G--CGAAGAC-AAA-ACCAT---GAAAAN----GCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-G-AA-A-CAGAGG-T-CC-------TCCNCCAG-CCCGAACCCGAC-AGCA---C-CCCCCAGCCA-CCGT-GC--TCGCC-ATCGACGG-CGTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-A-C-ATCTC-CAGCA--A--GGA-C-------AC-TGG-ACAAAGAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
Reference ( family-2329 ) : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAATGCACANATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTC-A-CGATCAGGN-ACAGCCCCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CAAC-GAGGGA---A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAC----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGT-GAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A---T--TA-CGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACN-G--CGAAGAC-AAA-ACCAT---GAAAAN----GCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-G-AA-A-CAGAGG-T-CC-------TCCNCCAG-CCCGAACCCGAC-AGCA---C-CCCCCAGCCA-CCGT-GC--TCGCC-ATCGACGG-CGTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-A-C-ATCTC-CAGCA--A--GGA-C-------AC-TGG-ACAAAGAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
gi|1 : CTGTTAGACGAGAAGAGGAAAGCTTTTATTGATTGGCAAAACCACCCAAACTGCTC----CTCCAGGCGTG-ACAGATACAAAG--ACTACAAAGCCAGAACACAGCGGGAGTTCCGCAACATGCAGAATCAGTGGTGGAAAAGAAAGGCTGAAG---TGCAA--CTATATGCAGACTCCAACAACTCCAAGATG------CTGTTCAGTGCAA-TAAAGGCCATAT-AT-GT-T-CCCTCAA-CG-TCAGGA-ACAGCCCCTCTGT--AT-TCTGCTGA
gi|11 : taaccactgggagtcattagtcacaaacctgcacataggcggctttgggaccagtggtcgtcgtttcttcgaaccaagggcagcggaaaacttcggcagtatcctaggcgactgagcagccttttcaggagcgcactgctcaccctaataaaggagggggctagaaaaggtgccccaaaaaaatgcctgccctacccaatctggccagctaaccgcggctggcaagatctacccatcctgcggtcgaccaaaacagaaaaagaaaatcattgttggaacatggaacgtacgtaaccttttggatcgagacgacgttgcaagacttcggagaaggacggctcttgtagctaaagaactggcaaggtataacattgacattgccgcaatcagtgaaactcggcagtgagtgaatataccttcttctggaagggtaaagcccagaacgaagacaaaatacatggtattgactctgccatcaagacaaaccaaaaaaaaaaacacaaaaaaaaaacaacctccgacagattccgagcctccccactgacaccaacgagaaactcatgaagcttcgtatccctatcagcaacaaccgcttctttaccatcattaccgtctatgccccgactctgactagcacagaggaagtgaaagagcagttttatgttgacctagatgctctgttgcgtactacacccatcaatgacaagcttttagtgttgggtgatttcaacgctagggacagcaaccagtggaaaggggtgatgggaaagcatgggacagggaaaatgaacgggaccgcttgtttctactgagtaaatgtgcccaatacgacttgctgctgaccaatacaaccttcaggcaggttgataagttcaagagaattggatgaacccgcgatctaaacagtggcatcttattgactatatcatcacctgccaacgtgacagcagagatgtcatcttcacaagggcaatgcgaggcgcagattgctggactgatcacagacatgtccgagcaaaactcaacctctgcatcgtcccacaccaccggagacgcccaaagctaattagactcgcattcaacacagcatgccccctctctagcagacaccgccaagatttccaaaccagcagaagaccactcacaggctcgccaaaagaaaagtggagttaattcaaggaagtggtcaccgaaacagccacatcagtattaggcccaaagaagaggtctcaccaagattggtttgacgaaaatgatgcatcagtgcattcaCTTTTTGACCT------CCG-C-CG----TCTC-ACT-GTCCG--GAC-AAAGACCTTCGAGAAAAT----G---AT-C--TTG--GAGGCAT--TG---TTTGCAGACGACTGTGCCCTCATAGCACACAGAGAAAA-CCACCTGC-A---------A-----GTC---AT-CGTTGACCGGTTCGCAG-----ATGCGG----CCAGAC---TG-TTTGGTATCACAATCAGTCT-CGG-GAAA-A-CAGAGG-TAGT-------TCAGCCAGCCCCGAAC---AC-AACA---TGGCCCCAGCCA---GT-CA--TCACC-ATCGACGG-AGTCCAGATGAA--TTG---TGTGGA--CAGTTTTAAATACC-TGGGCAGC-A-CAATCTC-C-GCA--GATGGATC-------AA-TGG-TCAAAGAGATTTTTTCCA-GGATCCA-GAAAGCCAG--CT--AAGCACT-CGGCAGATTC
gi|12 : ccGCAGACTCCAACAACTCCAAGATG------CTGCTCAGAGCAA-AAAAGGCCATAT-AT-GGTT-TCTCC-A-CG-TCAGGA-ACAGTCCCTCTG-TGC--TCTGTTGACGGTGC------TGTCA-TCATCAAGGACAAAGAGGGAATCATT----GC-TAGGGA---A--GAGCACTTCAGCCAGCTACTTAACCGGCCATCAACT--GTCGACCGGGCTGTGCTACAGCAGATACC---ACAG-AAGT-CTA---CGAAAGAG---GACCTTGA--CC-TTCCCC---CTACTGAAGACGAGGTC-AG-AGCTGCAATAAAACAGATGAAATGTGGCAAAGCCCCAGGGAAGGATGG-ACTCCCCGCAGAAATCTTCAAGGCTC-TGGGAGACATAGCTTTTCAAGCC----TTCTATGACGTCCTCTGCACTATATGGGAGGAAGagagtgaaagtcctgcagcagaaaggaatcatgcttgcgacaaagttgaagatatacagagctgtagtcctct
gi|14 : atAGCTCGGATGCCCTGTAAAGTTTA-CAA-A--CTC--A---T-----CAGGTTGTTC-ATGAT--AACATGA-------GG-ATGATGTCTTGTCCGA--CGGTGAGCCTCAAGAGGGCT-TTGCCAT-TCCA-----TGGAGTGAA--ACAAGGCTGCGTGCTTGCT-C-AGTGATGTTCAACCTCTTCT-TATCAC------AGTACTG-CTCGA---GCTATGAT-GAACTAGTACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGA--T------GCG-GGCG----T-TT-AGA-G--CGAAGAC-AAATACCAT---GAAAA-----GCTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGGTCACTGATGGTCa
gi|15 : -A-CAGAGGAT-CCAAGC---TCCACCAG-CCCGAAAC--AC-A--A---C-CAGCCAGCC--CAGTCAC--TCGCCAATCGACGGAAGTCCAGCTGAA--ATAGTCCGTGG----AATTTTAAAT----T--GC--C-A-C-ATCTCTCCGCA--GATGGATC-------AC-TGGAAAAAAGAGATCATT-CCA--GATCCA-GAAAGCAA----C--AAAGATC-GGCCAGAttcggtaagttcgtatgt
gi|16 : CAGACTCCAATAACACCAAGATGGCTTTGCTTTTCAGTGCAAATAAAGGTCATATTACCGG-TTCCCTC-AACG-TCATGTCACAGCTCCTCTGT-GCC-TCTGCTGACGGTG-C-TGC-CATCATgtgcaacagtcctacagcagataggaatcatgcttgcgacaagctgaagataataca
gi|18 : tatgcCAGTCTGCACTTGAGCGAATTCCTCAACAGCCAGT-C-AT--C-AAAGAGATAGA----GAACCC-TCCATC---T----ATGGGTGACCTCAAAAAG--Gcaa
gi|2 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGC-CCAA-AATGCACATATTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GG-G-CCTTC-A-TAATCTGGC-TCTGTC---CTGTTGCTATCTGTAGACGGAGCCATGCTCATCATTCATCAAGGACA---AGGCTATCA-T--CAAC-GAGAGATTTATGGAGCACTTCAGCCAACTTCTCAACCGCCCGTC--CTTGGTAGACCAGTTTGTACTTGAACGAATCCCTCAACAGCCAGT-C-A---CTGATGAGCTAGA---TAA--CC-TTCACC---C----ATGGATGAACTCAAGAAG--GCCACCAAGCAGATGGCATGTGGGAAAGTTTCGGGCAAGGACGGCAAT-CCAGCGGAGGTGTACAAAACACTT-AGCAACAAGGCCTTACATGCA----TTCCA-GA-GTCTTGACCAATGTTTGGGAAGAGGAAGAAATGCCTGC-TGATATCTAAGACGCAGCGATAGTCGCCCTGAACATGAAGTAG-GGCT----ATTG---CACAAACTGTT----GAAACTATAGGGGTATATCACTGCTTTCCATTGC----------TCCTTGCTCGTATCATCCTGAACAGGCTAATCTCATCCGCTA-CAGAGGAAAATTTCACC-GAGTCTTGATG-CGCTTCCGCTCC-AGTCGAA--GCGCA--GTGGACATGATCTTCTTTGGAAGACAGGTCCAGGAGAAATAACTTGAGCAAAACATGAACCACTGCCGAGTCTTCAAAGACTGCACAAAGGCTTTAAACACTGTCAACAGAGAAG--------------TTCGGGATGCTCGGATGCCCTGAAAAGTTCA-CAACA--CTCTGAGTCT--CATCAGGCTGTTCCATGAT--GACATGAC------GG-GTGCGGTTCTGTCTGA--CGGTGAGCCATCGGAGGGCT-TTGCAAT-CTCAA---ATGGAGTGAA--ACAAGGTTGTGTGCTTGTC-CCCGTGCTGTTCAATTTCTTTT-T--CAAC---CAAGTACTG-CTGCA--CGTTGTGCCAGGCCTAG-ACCTAGGTGTCCACA-TCACATACCGG--CTGGACGG---CTCACTGTTTGACCT------GCT-G-CA----TCTT-ACT-G--TGAAGAC-AAA-ACCAT---GAAAAG----GTTCATAC--TTC--AAGCC-C--TA---CTTGCCGGTGACTGTGCCCTGATGGCCCAC-AGGAGGA-TCACATGT-G---------A-----A-C---A--CATT------TTC-T-G-----AAGCAT----CCAAGA---TG-ACCGGTCTGACAATTATTCT-CGA-G-AA-A-CAGAAG-T-CC-------TCCTTCAG-CCCGCACCTGAC-AGTA---C-TCCCCAGTCA-CCAT-GCT-TCGCC-ATCGACGA-CACACGGATGAA--GAA---CGTCGATGCA--TTCAAGTACT-TGGGCAGC-A-------C-CAGC--------A-C-------AC-TGG-ACAAAGAGATTGCAGCCA-AGATCCA-GATAGCCAG--TC--AAGCACT-GGGCAAACTCtc
gi|3 : CTCCTTGCCAGAAAGAACAAAGCATTCATGGAGTGGTAGAATGATCTAG---TCTCT--GCTCCAAGGAAGGATAGGTT-GAAATCCCTCCAGACTCAGA-C-CAACGCGAGATTAGGAGGGTGCAAAACCAGTGGTGGCGGAAGAAG--TGCAGCGGGC---GGCT-------GATATCAACAACATCAAGCAG------TTCTTCAGCTCCA-TCAAGTCCATCT-TT-GG-C-CCTTC-A-GAAACAGAC-ACCGCAAAACTGTTG---TCAGCAGACGGTACC--GCTC-----TGGTCAAGGACT---AGACAGGCATTTCCAACCGTTGGA---A-GGAGCACTTCAGTCAAACGCTTA----CTCATC-A----GTCGCGCAGTCTGCACTCGACCAGATAGCCCAGCAGCCAATTC-AATCC-AAA---CTAGA---TGA--TCATCCAACTATC----GTGGAT--ACT-GAGAAA--ACAGTCAAGTAGATGAATTGTGGCAAGGACCCTGACATAGATGG-AGTACCCGCAGAATTGTACAGAGTGC-T---CGACAAAGACTCAC-TGCAGGCTTTCCATGAAGTTCTTACTAACATCTAA----AGGTTGA--TGTATACAGGATTTCTTGGATGTCACCATAGTCGCACCGTACAAGAA-CAGTGGCT-----CT------CAAACTGACAGTGGGAACTACAGAGGCATTTCACTGCTTTCAATAGCC--GGCAAAATCCGAGCACGCATCATCCCGAACAAGCTCACTACGTCCA-TACCCGAACAGAACCTC-CCAGAATCCCAATACAGTTTCTGTCC----T-GAAAGGCCCACCATTCACATGATCTTCACCGTGAGGCAAATACAAGAGAAGTGATTCGAGC------T---CTACT----AGTCAT---AGACCGGACGAAGGCGTTCGATACGGTCAACAGAGAAGCACTGTGGGTCATTCTTGGTAAACTAGGCTGCTCGAGGAAGTTCATCAA-A--CTT--A---TAATA-T---CTGTTTCATAAT--GACCCGAC------AG-GAGA-GTACTGTCAGA--TGGATGTCCTTCGGAG----------------AA---AT----T-AA--ATAAGGTTGTGT-CCTGTG-TCAGTGCTGTTCAACCTCTTTT-T--CACC---CAGGTGTTG-CTACA--TGTT
gi|4 : agaaatggaactagtccaaggacattgtgaagtagtcagccgaaacagtactgggaccaaacaatcgcacatatcaagactagttcaatgaaaatgacagcgctgtcgaaaacCTCAGGAAGCTCGGATGCCCTGTAAAGTTTA-CAACA--CTC--A---T-----CAGGTTGTTC-ATGAT--AACATGAC------GG-ATGATGTTCTGTCCGA--CGGTGAGCC-TCAGAGGGCT-TTGCCAT-CTCCA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCAGTGCTGTTCAACCTCTTCT-T--TACC---CAAGTACTG-CTTCA--GGCTATGATGAACCTAG-ACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-AGA-G--CGAAGAC-AAATACCAT---GAAAAA----GCTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGTGCACTGATGGTCCACAAGGAGAA-TCATC--C-T---------A-----ATC---A--GACT------ATT-G-GGGGAAAATTAT----CC--GA---TGCATAGGTCTGGCAATTAGTCT-CGGAA-AA-A-CAGCAG-T-CC-------TCCTTCAG-CTTGAACCTGAC-AGTA---A-CCCCCAGCCA-CCAT-GCA-ACACC-ATCGAC-G-CACACAGCTGAA--GAA---CGTCGATGCA--TTGAAGTACT-TTGGCAGC-GCC-ATCTC-CAGCGATA--GCA-C-------TC-TGG-ACAAAGAGATTGTAGCCA-GGATCCA-GAAAGCCAG---CAAAAGCACA-CGGCAACCTC
gi|5 : cACTTAA-ACATTGATATATG---TCCGCTATCGC--CTGGACGG---TTCATTGTTCGACCT------TCG-C-CG----TCTC-ACA-A--CTAAAAC-AGA-GACAT---TAAAAAAACTGCTCAT-C--T----AAGTT-T--TG---TTTGCTGATGACTGTGCCCTGATGGCCCACAAAGAGTA-CAACCTGCAG---------ACGATCGTCGATA--AGTT------CTC-C-G-----TGGCGA----CCAAGC---TG-TTTGGTCTTACAATCAGTGT-GGG-G-AAGA-CCGAAG-T-TC-------TCCTCCAG-CCTGCA-CTGATGAGCG---C-CCCACAGCCG-CCGT-GCATTTACC-ATCGACGA-TGTTCAGCTGAA--GAA---CGTAGACGC--CTTTAAGTACC-TATGAAGT-ACC-ATCTT-TAGCA--AC-GGC-C-------TCTTAG-ATTAGGAAATAGCAGCCC-GAATCCT-GAAAGCCAG--TC--CGGCAAT-GGAAAGACTcacaatcaaagtcttgcagcataaggacattctcctcagaaccaaactaaaggtatgcaatgctgtcgtcctctcgttactgctctatggctgtgaaaccggaccctctaccgcagacatatgaagaagatggaacaattccatacgcactctttgtgtgcaatcatgcaaatacgttagcaggaccgcatcactaaccaagaaatcctggacagagcggataccactactagcgttgaagccaaaatcatccaagctcaacttcgataatctggccatgttatccgtatggaggagtttagaattccatgaaagtttttctatggggagctagagtctggcagtgtcgtccgaaaaaagagtataaagacaacctcaaaaccagcctcaaatggacaggccttgaacctaggcagatcgaatctg
gi|6 : CTGTACAAGAA-CAAAGGCTGAAAACTGACACACAGACTGA------AAACTATAGGAGTATATCCTTACTTTCCATCGCCTGG--AAAATCCTTGCTCGTATCATCCGCAACAGGCTAATTTCATCTATTGC-AGAGGAAAACTTC-CC-GGGTCGCAGTGCCGCTTCCGCCCCCAGT-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGAGAAACATTGTGGATCATTCTCAGGAACCTCAGATGCCCTGCAAAGTTTA-CAACA--TTC--A---T-----CGGACTGTTCCGTGAT--GATATGAC------GG-GCGAAGTTCTGTCTGA--CAGCAAGCCCTCAGAGGGCT-TTGCCAT-CTCCA---ATTGAGTGAC--GCAAAGCTGTGTGATTGCT-CCCGTACTGTTTAA-TTCTTCT-T--TACC---CAAGTACTG-CTTCA--CGCTGTGAGAGACCTAG-ACCATGGTTTCTACA-TCAGTTACCAG--CTTGACGG---CTCATAGTTTAACCT------GCG-G-TG----TCTT-ATT-T--CCAAGATGAAG-ACCAT---GCAAAG----GCTCATAC--TTG--AAGCC-C--TA---TTTGTCGATGACTGCGCACTGATGGTCCTCAAGGAGAA-TCATCTAC-AGCCTATTGTA-----GAC---A--AGTT------TTC-C-G-----AAGCAT----Cttgctctggaccagagtgttgaaacacaaagacatccgattgtccattaaactcaaaagtgtacaatgcagttgtggtctcttcgctgctgtacggatgtgagacatggaccctctatcgcaagtacatcaagcttttagagcaactccacatgcactctctccgccacatcttgcatatttactggtaggacagaaattccatcctggaggtacacgacacagcggaccctacaaacattgaggcaaaggtgctttgggcacagttacgctggacttgccacatgagccacataaatgattccaggatatccagacaactgttgggctcaacagttgacgggtagtcgcagtcgggtccgaccaaagaagaggtacaaggacaatggcaaggcctacttgtaagtagaccgactttccaccga
gi|8 : cAAATTCA-CCACAGGCTC--A---T--TAACGGCCTCTTCCATGACAGGACATGACTGGACAGGTGTGCGGTTTTGTT-GATACGGAGAACACTTAAACACCTGTTGTTATACTCATTTTACGGAGTAGAGGAGAAGGATGC-TGTTTGCCGCCTGTGCTCTTCAACCG-TTCTAT--CACGGAGCAGGTTCTAACTCCATGCGCT-TGAAAGATC-GG-CCGTAGGTTTACGTAATCAGTTAACTGATCTGGAGGGATTCTT-CTTTTTGACCTCGCGCTGCGTG-CGATTATCTTCACTTGTCCG--GAC-AAAGACCTTCGAGAAAAT----G---ATGCGTTTGCCGAGCG-CATTAAAGTTTGCAGACGACTGTGCCCTCATAGCACACA-GAAGAAACCACCTTT-G---------A-----GTC---AATCGTTGACCGTTTT-C-G-----CAGCATGCGGCCAGGAGGCTGTATTGGTATCACAATCAGTCTGCGG-G-AA-AACAGAGG-T-GTAGGGTGTTCAGCCAG-CCCGA-CACAAC-AACATAGC-CTCTCTGCCAGTCAT--C--TAACC-ATCGACGG-AGTCCAGATGAATTGT----TGTGGA--CAGTTTTAAATACCTTGGGCAGCTA-CAATCTC-C-GCA--A--TGA-TGGAAATAAT-TGG-TCAAAGAGATTTTTTCCAGGGATCCATGAAAGCCAGCTTA--AAGCACTCGGGCAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagcctttgacagtaaccctagtctcc
gi|9 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGC-CCAA-AATGCACATATTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GG-G-CCTTC-A-attc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GTTCACCCGAACAACAAAGACTGCTACAGCAAACCAGGCGGAGGAAATCCATCGAGGGTTCAACGGCTGGTGAGGCGCTGCAGCAAGGCATTAATGAATGCTTAGGGTATTATAGAACACAAAAGACATCATGACCACCCACTGCGGCCAAGGAGGTTACCAGCCGTGACGATTCTCTGTACCAATTGATCAGGGCTTCTGCAGCAGAGAGAGTGGGGTCCCTGTGCAACGGCTTTTCCACTTTAATATCCTTCTCACACAGGATGCGTTGTACGTTCTATAAAGGTCCTGTGGCGACGGGGGATTGGCGAAAGCAACAGGTGGAGGTGACCACTGGGAGTTGTAGTCAGGAACCTGCACGTGGACAGATGTGGTCGCCCCTTCTCTGTACTCAGGGCAGCAGAGAAGTCCGGTAACATCTTTAGGATAGCACTGCTCACCCTAGTAAGGGAGGGACCTAGAAAAGGTGGTCTAAACATTGCCTGTCCTACATTATTTGGCCAATAAGCCGTGGCTGACAGATCTTCCATTCATGCACATGCGGTCGAAGCCAAAGAAGAATAAGGAAACTCTTATGAGGAGCATGGAATGTTCGTACACTTATGGGGCCGAAAACATCACAACAAGACCCCAAAGTAGAACAGTGTATGTTCACAGCAAGACCCCAAAATAGAACAGTAGACACT
Unaligned ( gi|10 ): CTCACTCGAACAACTTGAAAGACTGCTACGGCAGCCCAGGCGGAAGAACCCCAATATCTGGGTCCAACGACTGGGAAGGCGATGCAGCAAGACATTGTGGAATGCTCAGGGCGTAACNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCGTGACAGGAGTATAAAAGACCGCCACGGGCCATCCACTGCAGCCAGAAGAGGTATCAGGCTAATGGTTCTCTTTGCCATTGGGTCAAGGTTTCTTCTGCCGAGAGAGTGGGATTGCCCCCGTGCAACGGTTTCACCTTAATCAAAATCACGCCACAGGTGTCTATAGGACTCAGCTTTCGACCACAATAACGAAGTCTGTGGCAATGGGGGAGTGACAAAGATGGCAGGTGGGAGTAAACACAGGAGTCATTAGTTCACAAGGCCTGCACGTAGGCGCCTTGGACCAGAGGTCGTCGTTTTTCTTTGAACCCAGAG
Unaligned ( gi|13 ): TAATGCTGTTGTCATCTCGTCACTGCTCCATGGCTGTGAAACCTGGACCTTCTACCGCACACACATCAAGCAGCTGCAGAACAGTTCCACACGCGCGCTCTGCGAGCAATCATACGAATACGTTGGCAAGACCAAGTAGTCCTGGACAGAGCGGACACCACTAGCGTTGAAACCAACACCATCCAAGCTCAGTTTTGATGGTCAGTCCACGTTATCCGCATAGAGGAATTCAGAATTCCACGGCAGATTTTCTATGAGTATTTAGCGTCCAGCAGACGCAAAAAGAGGTATAAAGACAACCTCAAAGTCAACAATGAACAATCCCTCAACCTAGGCAGCTAGAATCTGCA
Unaligned ( gi|17 ): CCAGGATCACAGAAGCCAAACAAAGCTATCCCAGAGTGAACAGTTTCCTCAGGAGATAGGAAATCATGCTTGCGACAAAGGCTAAGATATACATGTC
Unaligned ( gi|19 ): CTCTCTCACTCTATATGGCGTGTAGACATGGACCCATCAAAACTGGAGCAATTCCACA
Alignments
lowQualScore : 111 111111 11 111 2222 111111 111 2222 222222 333333333 222 222 1 333333 444444 1 3333333 2222 11 1 33333333 11 11 1 2 2222 2222 2 11 11 1 2 55555555555 44444 444444 11 11 1 1 222222 11 11 3333333333 1111 111 444444444444 111111 1111 1111 111 11111 111 111111 1111 11111 2 222 11111 111 666666666666666666666666666666666666666666666666 1111 1111 11 3333333333 1111 11111 22222 11 22222222 222222 22222 1 555555555555555555555 222222
lowQualScore : 0 1 777 777777 55 8 1 88 3 0 1 777 0 11 1 0 2 0 9 2 2 3333 1 22 999999 1 1 1 6 1 0 1 6 6 444 6 1111 99 1 666 888888 1 000000000 9 0 333 7 555 3 444444 1 7 0 444444 4 0 1 7 2 0 8888888 2 8 0000 33 0 0 22222222 2 0 33 3 33 1 3 0 3 1 6 0 1 3 9999 7 8888 7 6 1 1 999 22 88 1 66 1 1 2 1 1 0 3 6 22222222222 00000 3 111111 3 0 22 33 3 3 1 0 6 111111 22 1 22 22 1 1 1 1111111111 6666 1 555 1 1 2 1 999 3 1 6 6 99 666666666666 6 1 6 99 999999 6 7 7 99 6 7 0 1 6 1 6 5555 2 1 99 6 1 1 6 99 4444 6 1 444 6 44 6 1 1 77777 1 77777 2 111 666666 888 2222 5 88888 5 5 2 000 88888 6 7 8888888 8888 000 1 0 1 6 1 999999999999999999999999999999999999999999999999 0 4444 22 4444 77 1 8 999 6 6 6 8888888888 1 6 6666 6 3 55555 999 88888 0 6 11 1 1 00000000 1 777777 6 5 55555 6 1 888888888888888888888 6 1 77 77 6 000000 6
lowQualScore : . . ... ...... .. . . .. . . . ... . .. . . . . . . . .... . .. ...... . . . . . . . . . ... . .... .. . ... ...... . ......... . . ... . ... . ...... . . . ...... . . . . . . ....... . . .... .. . . ........ . . .. . .. . . . . . . . . . .... . .... . . . . ... .. .. . .. . . . . . . . . ........... ..... . ...... . . .. .. . . . . . ...... .. . .. .. . . . .......... .... . ... . . . . ... . . . . .. ............ . . . .. ...... . . . .. . . . . . . . .... . . .. . . . . .. .... . . ... . .. . . . ..... . ..... . ... ...... ... .... . ..... . . . ... ..... . . ....... .... ... . . . . . ................................................ . .... .. .... .. . . ... . . . .......... . . .... . . ..... ... ..... . . .. . . ........ . ...... . . ..... . . ..................... . . .. .. . ...... .
lowQualScore : 2 2 555 222222 88 8 0 00 2 2 0 888 8 88 0 2 5 2 2 5 5 5555 0 00 222222 5 0 0 7 0 7 0 7 7 888 7 7777 00 0 000 000000 4 555555555 2 7 333 3 000 3 333333 0 3 7 777777 2 2 0 0 5 0 5555555 5 8 8888 88 0 2 88888888 5 8 00 2 88 0 7 7 3 0 7 7 0 7 7777 3 3333 3 7 0 0 333 00 55 0 55 0 0 5 0 0 7 3 7 00000000000 33333 7 777777 7 7 77 33 3 3 0 7 7 777777 77 0 33 00 0 0 0 3333333333 3333 0 000 0 0 0 0 333 7 0 7 7 22 333333333333 3 0 7 22 222222 7 5 8 22 3 8 7 0 7 0 7 2222 5 0 22 7 0 0 7 22 2222 7 0 333 4 88 7 5 0 00000 0 33333 5 777 444444 666 1111 7 33333 0 7 9 000 77777 6 1 7777777 1111 000 4 7 7 7 0 555555555555555555555555555555555555555555555555 7 2222 22 6666 44 0 0 222 7 7 7 8888888888 0 7 5555 7 7 22222 333 55555 7 7 88 0 0 33333333 0 000000 7 2 22222 7 3 333333333333333333333 7 0 77 77 7 888888 7
consensus : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAATGCACANATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTC-A-CGATCAGGN-ACAGCCCCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CAAC-GAGGGA---A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAC----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGT-GAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A---T--TA-CGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACN-G--CGAAGAC-AAA-ACCAT---GAAAAN----GCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-G-AA-A-CAGAGG-T-CC-------TCCNCCAG-CCCGAACCCGAC-AGCA---C-CCCCCAGCCA-CCGT-GC--TCGCC-ATCGACGG-CGTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-A-C-ATCTC-CAGCA--A--GGA-C-------AC-TGG-ACAAAGAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
Reference ( family-2329 ) : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAATGCACANATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTC-A-CGATCAGGN-ACAGCCCCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CAAC-GAGGGA---A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAC----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGT-GAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A---T--TA-CGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACN-G--CGAAGAC-AAA-ACCAT---GAAAAN----GCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-G-AA-A-CAGAGG-T-CC-------TCCNCCAG-CCCGAACCCGAC-AGCA---C-CCCCCAGCCA-CCGT-GC--TCGCC-ATCGACGG-CGTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-A-C-ATCTC-CAGCA--A--GGA-C-------AC-TGG-ACAAAGAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
gi|1 : CTGTTAGACGAGAAGAGGAAAGCTTTTATTGATTGGCAAAACCACCCAAACTGCTC----CTCCAGGCGTG-ACAGATACAAAG--ACTACAAAGCCAGAACACAGCGGGAGTTCCGCAACATGCAGAATCAGTGGTGGAAAAGAAAGGCTGAAG---TGCAA--CTATATGCAGACTCCAACAACTCCAAGATG------CTGTTCAGTGCAA-TAAAGGCCATAT-AT-GT-T-CCCTCAA-CG-TCAGGA-ACAGCCCCTCTGT--AT-TCTGCTGA
gi|11 : taaccactgggagtcattagtcacaaacctgcacataggcggctttgggaccagtggtcgtcgtttcttcgaaccaagggcagcggaaaacttcggcagtatcctaggcgactgagcagccttttcaggagcgcactgctcaccctaataaaggagggggctagaaaaggtgccccaaaaaaatgcctgccctacccaatctggccagctaaccgcggctggcaagatctacccatcctgcggtcgaccaaaacagaaaaagaaaatcattgttggaacatggaacgtacgtaaccttttggatcgagacgacgttgcaagacttcggagaaggacggctcttgtagctaaagaactggcaaggtataacattgacattgccgcaatcagtgaaactcggcagtgagtgaatataccttcttctggaagggtaaagcccagaacgaagacaaaatacatggtattgactctgccatcaagacaaaccaaaaaaaaaaacacaaaaaaaaaacaacctccgacagattccgagcctccccactgacaccaacgagaaactcatgaagcttcgtatccctatcagcaacaaccgcttctttaccatcattaccgtctatgccccgactctgactagcacagaggaagtgaaagagcagttttatgttgacctagatgctctgttgcgtactacacccatcaatgacaagcttttagtgttgggtgatttcaacgctagggacagcaaccagtggaaaggggtgatgggaaagcatgggacagggaaaatgaacgggaccgcttgtttctactgagtaaatgtgcccaatacgacttgctgctgaccaatacaaccttcaggcaggttgataagttcaagagaattggatgaacccgcgatctaaacagtggcatcttattgactatatcatcacctgccaacgtgacagcagagatgtcatcttcacaagggcaatgcgaggcgcagattgctggactgatcacagacatgtccgagcaaaactcaacctctgcatcgtcccacaccaccggagacgcccaaagctaattagactcgcattcaacacagcatgccccctctctagcagacaccgccaagatttccaaaccagcagaagaccactcacaggctcgccaaaagaaaagtggagttaattcaaggaagtggtcaccgaaacagccacatcagtattaggcccaaagaagaggtctcaccaagattggtttgacgaaaatgatgcatcagtgcattcaCTTTTTGACCT------CCG-C-CG----TCTC-ACT-GTCCG--GAC-AAAGACCTTCGAGAAAAT----G---AT-C--TTG--GAGGCAT--TG---TTTGCAGACGACTGTGCCCTCATAGCACACAGAGAAAA-CCACCTGC-A---------A-----GTC---AT-CGTTGACCGGTTCGCAG-----ATGCGG----CCAGAC---TG-TTTGGTATCACAATCAGTCT-CGG-GAAA-A-CAGAGG-TAGT-------TCAGCCAGCCCCGAAC---AC-AACA---TGGCCCCAGCCA---GT-CA--TCACC-ATCGACGG-AGTCCAGATGAA--TTG---TGTGGA--CAGTTTTAAATACC-TGGGCAGC-A-CAATCTC-C-GCA--GATGGATC-------AA-TGG-TCAAAGAGATTTTTTCCA-GGATCCA-GAAAGCCAG--CT--AAGCACT-CGGCAGATTC
gi|12 : ccGCAGACTCCAACAACTCCAAGATG------CTGCTCAGAGCAA-AAAAGGCCATAT-AT-GGTT-TCTCC-A-CG-TCAGGA-ACAGTCCCTCTG-TGC--TCTGTTGACGGTGC------TGTCA-TCATCAAGGACAAAGAGGGAATCATT----GC-TAGGGA---A--GAGCACTTCAGCCAGCTACTTAACCGGCCATCAACT--GTCGACCGGGCTGTGCTACAGCAGATACC---ACAG-AAGT-CTA---CGAAAGAG---GACCTTGA--CC-TTCCCC---CTACTGAAGACGAGGTC-AG-AGCTGCAATAAAACAGATGAAATGTGGCAAAGCCCCAGGGAAGGATGG-ACTCCCCGCAGAAATCTTCAAGGCTC-TGGGAGACATAGCTTTTCAAGCC----TTCTATGACGTCCTCTGCACTATATGGGAGGAAGagagtgaaagtcctgcagcagaaaggaatcatgcttgcgacaaagttgaagatatacagagctgtagtcctct
gi|14 : atAGCTCGGATGCCCTGTAAAGTTTA-CAA-A--CTC--A---T-----CAGGTTGTTC-ATGAT--AACATGA-------GG-ATGATGTCTTGTCCGA--CGGTGAGCCTCAAGAGGGCT-TTGCCAT-TCCA-----TGGAGTGAA--ACAAGGCTGCGTGCTTGCT-C-AGTGATGTTCAACCTCTTCT-TATCAC------AGTACTG-CTCGA---GCTATGAT-GAACTAGTACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGA--T------GCG-GGCG----T-TT-AGA-G--CGAAGAC-AAATACCAT---GAAAA-----GCTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGGTCACTGATGGTCa
gi|15 : -A-CAGAGGAT-CCAAGC---TCCACCAG-CCCGAAAC--AC-A--A---C-CAGCCAGCC--CAGTCAC--TCGCCAATCGACGGAAGTCCAGCTGAA--ATAGTCCGTGG----AATTTTAAAT----T--GC--C-A-C-ATCTCTCCGCA--GATGGATC-------AC-TGGAAAAAAGAGATCATT-CCA--GATCCA-GAAAGCAA----C--AAAGATC-GGCCAGAttcggtaagttcgtatgt
gi|16 : CAGACTCCAATAACACCAAGATGGCTTTGCTTTTCAGTGCAAATAAAGGTCATATTACCGG-TTCCCTC-AACG-TCATGTCACAGCTCCTCTGT-GCC-TCTGCTGACGGTG-C-TGC-CATCATgtgcaacagtcctacagcagataggaatcatgcttgcgacaagctgaagataataca
gi|18 : tatgcCAGTCTGCACTTGAGCGAATTCCTCAACAGCCAGT-C-AT--C-AAAGAGATAGA----GAACCC-TCCATC---T----ATGGGTGACCTCAAAAAG--Gcaa
gi|2 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGC-CCAA-AATGCACATATTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GG-G-CCTTC-A-TAATCTGGC-TCTGTC---CTGTTGCTATCTGTAGACGGAGCCATGCTCATCATTCATCAAGGACA---AGGCTATCA-T--CAAC-GAGAGATTTATGGAGCACTTCAGCCAACTTCTCAACCGCCCGTC--CTTGGTAGACCAGTTTGTACTTGAACGAATCCCTCAACAGCCAGT-C-A---CTGATGAGCTAGA---TAA--CC-TTCACC---C----ATGGATGAACTCAAGAAG--GCCACCAAGCAGATGGCATGTGGGAAAGTTTCGGGCAAGGACGGCAAT-CCAGCGGAGGTGTACAAAACACTT-AGCAACAAGGCCTTACATGCA----TTCCA-GA-GTCTTGACCAATGTTTGGGAAGAGGAAGAAATGCCTGC-TGATATCTAAGACGCAGCGATAGTCGCCCTGAACATGAAGTAG-GGCT----ATTG---CACAAACTGTT----GAAACTATAGGGGTATATCACTGCTTTCCATTGC----------TCCTTGCTCGTATCATCCTGAACAGGCTAATCTCATCCGCTA-CAGAGGAAAATTTCACC-GAGTCTTGATG-CGCTTCCGCTCC-AGTCGAA--GCGCA--GTGGACATGATCTTCTTTGGAAGACAGGTCCAGGAGAAATAACTTGAGCAAAACATGAACCACTGCCGAGTCTTCAAAGACTGCACAAAGGCTTTAAACACTGTCAACAGAGAAG--------------TTCGGGATGCTCGGATGCCCTGAAAAGTTCA-CAACA--CTCTGAGTCT--CATCAGGCTGTTCCATGAT--GACATGAC------GG-GTGCGGTTCTGTCTGA--CGGTGAGCCATCGGAGGGCT-TTGCAAT-CTCAA---ATGGAGTGAA--ACAAGGTTGTGTGCTTGTC-CCCGTGCTGTTCAATTTCTTTT-T--CAAC---CAAGTACTG-CTGCA--CGTTGTGCCAGGCCTAG-ACCTAGGTGTCCACA-TCACATACCGG--CTGGACGG---CTCACTGTTTGACCT------GCT-G-CA----TCTT-ACT-G--TGAAGAC-AAA-ACCAT---GAAAAG----GTTCATAC--TTC--AAGCC-C--TA---CTTGCCGGTGACTGTGCCCTGATGGCCCAC-AGGAGGA-TCACATGT-G---------A-----A-C---A--CATT------TTC-T-G-----AAGCAT----CCAAGA---TG-ACCGGTCTGACAATTATTCT-CGA-G-AA-A-CAGAAG-T-CC-------TCCTTCAG-CCCGCACCTGAC-AGTA---C-TCCCCAGTCA-CCAT-GCT-TCGCC-ATCGACGA-CACACGGATGAA--GAA---CGTCGATGCA--TTCAAGTACT-TGGGCAGC-A-------C-CAGC--------A-C-------AC-TGG-ACAAAGAGATTGCAGCCA-AGATCCA-GATAGCCAG--TC--AAGCACT-GGGCAAACTCtc
gi|3 : CTCCTTGCCAGAAAGAACAAAGCATTCATGGAGTGGTAGAATGATCTAG---TCTCT--GCTCCAAGGAAGGATAGGTT-GAAATCCCTCCAGACTCAGA-C-CAACGCGAGATTAGGAGGGTGCAAAACCAGTGGTGGCGGAAGAAG--TGCAGCGGGC---GGCT-------GATATCAACAACATCAAGCAG------TTCTTCAGCTCCA-TCAAGTCCATCT-TT-GG-C-CCTTC-A-GAAACAGAC-ACCGCAAAACTGTTG---TCAGCAGACGGTACC--GCTC-----TGGTCAAGGACT---AGACAGGCATTTCCAACCGTTGGA---A-GGAGCACTTCAGTCAAACGCTTA----CTCATC-A----GTCGCGCAGTCTGCACTCGACCAGATAGCCCAGCAGCCAATTC-AATCC-AAA---CTAGA---TGA--TCATCCAACTATC----GTGGAT--ACT-GAGAAA--ACAGTCAAGTAGATGAATTGTGGCAAGGACCCTGACATAGATGG-AGTACCCGCAGAATTGTACAGAGTGC-T---CGACAAAGACTCAC-TGCAGGCTTTCCATGAAGTTCTTACTAACATCTAA----AGGTTGA--TGTATACAGGATTTCTTGGATGTCACCATAGTCGCACCGTACAAGAA-CAGTGGCT-----CT------CAAACTGACAGTGGGAACTACAGAGGCATTTCACTGCTTTCAATAGCC--GGCAAAATCCGAGCACGCATCATCCCGAACAAGCTCACTACGTCCA-TACCCGAACAGAACCTC-CCAGAATCCCAATACAGTTTCTGTCC----T-GAAAGGCCCACCATTCACATGATCTTCACCGTGAGGCAAATACAAGAGAAGTGATTCGAGC------T---CTACT----AGTCAT---AGACCGGACGAAGGCGTTCGATACGGTCAACAGAGAAGCACTGTGGGTCATTCTTGGTAAACTAGGCTGCTCGAGGAAGTTCATCAA-A--CTT--A---TAATA-T---CTGTTTCATAAT--GACCCGAC------AG-GAGA-GTACTGTCAGA--TGGATGTCCTTCGGAG----------------AA---AT----T-AA--ATAAGGTTGTGT-CCTGTG-TCAGTGCTGTTCAACCTCTTTT-T--CACC---CAGGTGTTG-CTACA--TGTT
gi|4 : agaaatggaactagtccaaggacattgtgaagtagtcagccgaaacagtactgggaccaaacaatcgcacatatcaagactagttcaatgaaaatgacagcgctgtcgaaaacCTCAGGAAGCTCGGATGCCCTGTAAAGTTTA-CAACA--CTC--A---T-----CAGGTTGTTC-ATGAT--AACATGAC------GG-ATGATGTTCTGTCCGA--CGGTGAGCC-TCAGAGGGCT-TTGCCAT-CTCCA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCAGTGCTGTTCAACCTCTTCT-T--TACC---CAAGTACTG-CTTCA--GGCTATGATGAACCTAG-ACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-AGA-G--CGAAGAC-AAATACCAT---GAAAAA----GCTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGTGCACTGATGGTCCACAAGGAGAA-TCATC--C-T---------A-----ATC---A--GACT------ATT-G-GGGGAAAATTAT----CC--GA---TGCATAGGTCTGGCAATTAGTCT-CGGAA-AA-A-CAGCAG-T-CC-------TCCTTCAG-CTTGAACCTGAC-AGTA---A-CCCCCAGCCA-CCAT-GCA-ACACC-ATCGAC-G-CACACAGCTGAA--GAA---CGTCGATGCA--TTGAAGTACT-TTGGCAGC-GCC-ATCTC-CAGCGATA--GCA-C-------TC-TGG-ACAAAGAGATTGTAGCCA-GGATCCA-GAAAGCCAG---CAAAAGCACA-CGGCAACCTC
gi|5 : cACTTAA-ACATTGATATATG---TCCGCTATCGC--CTGGACGG---TTCATTGTTCGACCT------TCG-C-CG----TCTC-ACA-A--CTAAAAC-AGA-GACAT---TAAAAAAACTGCTCAT-C--T----AAGTT-T--TG---TTTGCTGATGACTGTGCCCTGATGGCCCACAAAGAGTA-CAACCTGCAG---------ACGATCGTCGATA--AGTT------CTC-C-G-----TGGCGA----CCAAGC---TG-TTTGGTCTTACAATCAGTGT-GGG-G-AAGA-CCGAAG-T-TC-------TCCTCCAG-CCTGCA-CTGATGAGCG---C-CCCACAGCCG-CCGT-GCATTTACC-ATCGACGA-TGTTCAGCTGAA--GAA---CGTAGACGC--CTTTAAGTACC-TATGAAGT-ACC-ATCTT-TAGCA--AC-GGC-C-------TCTTAG-ATTAGGAAATAGCAGCCC-GAATCCT-GAAAGCCAG--TC--CGGCAAT-GGAAAGACTcacaatcaaagtcttgcagcataaggacattctcctcagaaccaaactaaaggtatgcaatgctgtcgtcctctcgttactgctctatggctgtgaaaccggaccctctaccgcagacatatgaagaagatggaacaattccatacgcactctttgtgtgcaatcatgcaaatacgttagcaggaccgcatcactaaccaagaaatcctggacagagcggataccactactagcgttgaagccaaaatcatccaagctcaacttcgataatctggccatgttatccgtatggaggagtttagaattccatgaaagtttttctatggggagctagagtctggcagtgtcgtccgaaaaaagagtataaagacaacctcaaaaccagcctcaaatggacaggccttgaacctaggcagatcgaatctg
gi|6 : CTGTACAAGAA-CAAAGGCTGAAAACTGACACACAGACTGA------AAACTATAGGAGTATATCCTTACTTTCCATCGCCTGG--AAAATCCTTGCTCGTATCATCCGCAACAGGCTAATTTCATCTATTGC-AGAGGAAAACTTC-CC-GGGTCGCAGTGCCGCTTCCGCCCCCAGT-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGAGAAACATTGTGGATCATTCTCAGGAACCTCAGATGCCCTGCAAAGTTTA-CAACA--TTC--A---T-----CGGACTGTTCCGTGAT--GATATGAC------GG-GCGAAGTTCTGTCTGA--CAGCAAGCCCTCAGAGGGCT-TTGCCAT-CTCCA---ATTGAGTGAC--GCAAAGCTGTGTGATTGCT-CCCGTACTGTTTAA-TTCTTCT-T--TACC---CAAGTACTG-CTTCA--CGCTGTGAGAGACCTAG-ACCATGGTTTCTACA-TCAGTTACCAG--CTTGACGG---CTCATAGTTTAACCT------GCG-G-TG----TCTT-ATT-T--CCAAGATGAAG-ACCAT---GCAAAG----GCTCATAC--TTG--AAGCC-C--TA---TTTGTCGATGACTGCGCACTGATGGTCCTCAAGGAGAA-TCATCTAC-AGCCTATTGTA-----GAC---A--AGTT------TTC-C-G-----AAGCAT----Cttgctctggaccagagtgttgaaacacaaagacatccgattgtccattaaactcaaaagtgtacaatgcagttgtggtctcttcgctgctgtacggatgtgagacatggaccctctatcgcaagtacatcaagcttttagagcaactccacatgcactctctccgccacatcttgcatatttactggtaggacagaaattccatcctggaggtacacgacacagcggaccctacaaacattgaggcaaaggtgctttgggcacagttacgctggacttgccacatgagccacataaatgattccaggatatccagacaactgttgggctcaacagttgacgggtagtcgcagtcgggtccgaccaaagaagaggtacaaggacaatggcaaggcctacttgtaagtagaccgactttccaccga
gi|8 : cAAATTCA-CCACAGGCTC--A---T--TAACGGCCTCTTCCATGACAGGACATGACTGGACAGGTGTGCGGTTTTGTT-GATACGGAGAACACTTAAACACCTGTTGTTATACTCATTTTACGGAGTAGAGGAGAAGGATGC-TGTTTGCCGCCTGTGCTCTTCAACCG-TTCTAT--CACGGAGCAGGTTCTAACTCCATGCGCT-TGAAAGATC-GG-CCGTAGGTTTACGTAATCAGTTAACTGATCTGGAGGGATTCTT-CTTTTTGACCTCGCGCTGCGTG-CGATTATCTTCACTTGTCCG--GAC-AAAGACCTTCGAGAAAAT----G---ATGCGTTTGCCGAGCG-CATTAAAGTTTGCAGACGACTGTGCCCTCATAGCACACA-GAAGAAACCACCTTT-G---------A-----GTC---AATCGTTGACCGTTTT-C-G-----CAGCATGCGGCCAGGAGGCTGTATTGGTATCACAATCAGTCTGCGG-G-AA-AACAGAGG-T-GTAGGGTGTTCAGCCAG-CCCGA-CACAAC-AACATAGC-CTCTCTGCCAGTCAT--C--TAACC-ATCGACGG-AGTCCAGATGAATTGT----TGTGGA--CAGTTTTAAATACCTTGGGCAGCTA-CAATCTC-C-GCA--A--TGA-TGGAAATAAT-TGG-TCAAAGAGATTTTTTCCAGGGATCCATGAAAGCCAGCTTA--AAGCACTCGGGCAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagcctttgacagtaaccctagtctcc
gi|9 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGC-CCAA-AATGCACATATTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GG-G-CCTTC-A-attc
blockSeqs : T . TAAGC GG C T TT T T TT AT T G A C G TC C AT GCTTTG G G A A A A T C TT . ACG TC A CCT TTGCTA T CCATGCTCA T . T TCC C TTTATG T A CTTG T T T C T AATCC G A T AC A TATC G CA A . T G C A A G A TTA A GGCT T A G T GAA TT . A AG T T C C A . T GAAAACTGACA CAGTG A CGGC C AT CC . A C C CCAGT AG C CC TC A T A NNNNNNNNNN NNNN A NNN G G C G CAC G A T C GG TGAGTCTCAT A G C AG TGGACA T G T TA T A G G A A TTTT G G GG G C T A . GGAG A G TGC G CA . C G CGTAA C ATCTG C ATT CGCGCT GG ATTA C TTGTC A G T CGA AAACT C A GTTTGCC CAT AAG T A A G AGACGATCGTCGATAAGTTCTCCG GCGG AA AGGC CA G G AA G A A GTAGGGTGT A . CCTG G G TAGC AGT GCAT A AA C C ATAGTC G TGCA T G TACA T C AATGATGGAAATAAT A A AG GG T CTTA C
blockSeqs : C . TAAGC A G G TT T A TT GG A G C C G TC C AT . T G A . A A . . TT . TAA A A CCT TGCC T CTGCCA T . . C . AG G . A T C T C . ATC G C T . . T G CA A . A T . G . T G T . . . . T C . . A CT . C CTGG G A C . . G C T NN N NN NN N N N T . N . N N N N CAT A G . C . ATAATA A G C . . . T A . A T G . C . A G G . . A C . . C . A C A TG . A G CACA A CTG C . . TG . . AG A . T . G T A GTG C . T A . G AGCCTATTGTAGACAAGTTTTCCG . AA A TA G . G . . . CCAAGC T . CCTG . G C AC CAC . C A A TTGT C TGCA . T GCC . A AGATGGATCAC . G AG A . CAA .
blockSeqs : T . TGCT A C T G T T C AT T . A . G . G CA . T T C . C C . . G . GAA C T AAA TGC A CCGCTC . C A C C . ACT . C . . . C . G A . T . C . ATTAA G A C . . . A C . T C G . C . A T G . . A C . . C . T T G GA . A A TTCA T CTG C . . G . . TG A . G . A C A TTC C . T A . A GAGTCAATCGTTGACCGTTTTCG . AG A A T . G . . . CC T . CACA . G C AC GCT . C A C GAA C CGCC . A ACC . A GATAGCACTC . G AG G . TC .
blockSeqs : T CA . C T C . C C . . C . CG C C . TTG A C . C . AT G C C . . . G T . C C A . T . A G A . . C C . . C . T G . AA . C T TACA C CTT G . . G . . AG A . . . G C A GTG C . T A . T TAATCAGACTATTGGGGGAA . . C T C . G . . . CC T . CTG . A A GC GCA . T T C GAA A CAGT . G AC . A AACGGCCTCT . G TT G . TC .
blockSeqs : G CA . T T C . C C . . G . . . . AT . . . . . . . . . A . . . . . A . . . . T . . . C . C C . G T TG A . . . . C . . AA A . . . T C G TTG T . T . . . GAACACATTTTCTG . . . . TC G . AC . . C C C . A C A GAA G AAT . . A . . ACAC . T T . . C .
blockSeqs : . G . . TT . . . . . . . T C . C
blockSeqCons : NAA* A*** ** C*** C** NA CTG** AG*** *** C*** G** CC******** CCCG C**** AC* GCN** AGACGGCNCNC**********
originalCons : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAATGCACANATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTC-A-CGATCAGGN-ACAGCCCCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CAAC-GAGGGA---A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAC----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGT-GAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A---T--TA-CGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACN-G--CGAAGAC-AAA-ACCAT---GAAAAN----GCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-G-AA-A-CAGAGG-T-CC-------TCCNCCAG-CCCGAACCCGAC-AGCA---C-CCCCCAGCCA-CCGT-GC--TCGCC-ATCGACGG-CGTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-A-C-ATCTC-CAGCA--A--GGA-C-------AC-TGG-ACAAAGAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
finalCons : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAATGCACANATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTC-ANAA-TCAGGN-ACAGCCCCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CAAC-GAGGGA---A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAC----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGT-GAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A---T--TA-CGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCAC--GCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGGCTG--GACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTT-ACAG---CGAAGAC-AAA-ACCAT---GAAAAN----GCTCATAC--TTG--AAGCCC---TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGGG--AA-A-CAGAGG-TCC--------TCCNCCAG-CCCGAACCCGAC-AGCAC----CCCCCAGCCAC-CGTGCN--TCGCC-ATCGACGG-CGTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-A-C-ATCTC-CAGCAGACGGCNCNC----------TGG-ACAAAGAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GTTCACCCGAACAACAAAGACTGCTACAGCAAACCAGGCGGAGGAAATCCATCGAGGGTTCAACGGCTGGTGAGGCGCTGCAGCAAGGCATTAATGAATGCTTAGGGTATTATAGAACACAAAAGACATCATGACCACCCACTGCGGCCAAGGAGGTTACCAGCCGTGACGATTCTCTGTACCAATTGATCAGGGCTTCTGCAGCAGAGAGAGTGGGGTCCCTGTGCAACGGCTTTTCCACTTTAATATCCTTCTCACACAGGATGCGTTGTACGTTCTATAAAGGTCCTGTGGCGACGGGGGATTGGCGAAAGCAACAGGTGGAGGTGACCACTGGGAGTTGTAGTCAGGAACCTGCACGTGGACAGATGTGGTCGCCCCTTCTCTGTACTCAGGGCAGCAGAGAAGTCCGGTAACATCTTTAGGATAGCACTGCTCACCCTAGTAAGGGAGGGACCTAGAAAAGGTGGTCTAAACATTGCCTGTCCTACATTATTTGGCCAATAAGCCGTGGCTGACAGATCTTCCATTCATGCACATGCGGTCGAAGCCAAAGAAGAATAAGGAAACTCTTATGAGGAGCATGGAATGTTCGTACACTTATGGGGCCGAAAACATCACAACAAGACCCCAAAGTAGAACAGTGTATGTTCACAGCAAGACCCCAAAATAGAACAGTAGACACT
Unaligned ( gi|10 ): CTCACTCGAACAACTTGAAAGACTGCTACGGCAGCCCAGGCGGAAGAACCCCAATATCTGGGTCCAACGACTGGGAAGGCGATGCAGCAAGACATTGTGGAATGCTCAGGGCGTAACNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCGTGACAGGAGTATAAAAGACCGCCACGGGCCATCCACTGCAGCCAGAAGAGGTATCAGGCTAATGGTTCTCTTTGCCATTGGGTCAAGGTTTCTTCTGCCGAGAGAGTGGGATTGCCCCCGTGCAACGGTTTCACCTTAATCAAAATCACGCCACAGGTGTCTATAGGACTCAGCTTTCGACCACAATAACGAAGTCTGTGGCAATGGGGGAGTGACAAAGATGGCAGGTGGGAGTAAACACAGGAGTCATTAGTTCACAAGGCCTGCACGTAGGCGCCTTGGACCAGAGGTCGTCGTTTTTCTTTGAACCCAGAG
Unaligned ( gi|13 ): TAATGCTGTTGTCATCTCGTCACTGCTCCATGGCTGTGAAACCTGGACCTTCTACCGCACACACATCAAGCAGCTGCAGAACAGTTCCACACGCGCGCTCTGCGAGCAATCATACGAATACGTTGGCAAGACCAAGTAGTCCTGGACAGAGCGGACACCACTAGCGTTGAAACCAACACCATCCAAGCTCAGTTTTGATGGTCAGTCCACGTTATCCGCATAGAGGAATTCAGAATTCCACGGCAGATTTTCTATGAGTATTTAGCGTCCAGCAGACGCAAAAAGAGGTATAAAGACAACCTCAAAGTCAACAATGAACAATCCCTCAACCTAGGCAGCTAGAATCTGCA
Unaligned ( gi|17 ): CCAGGATCACAGAAGCCAAACAAAGCTATCCCAGAGTGAACAGTTTCCTCAGGAGATAGGAAATCATGCTTGCGACAAAGGCTAAGATATACATGTC
Unaligned ( gi|19 ): CTCTCTCACTCTATATGGCGTGTAGACATGGACCCATCAAAACTGGAGCAATTCCACA
Alignments
lowQualScore : 111 111111 11 111 2222 111111 111 11 222222 333333333 222 222 1 333333 444444 1 3333333 2222 11 1 33333333 11 11 1 2 2222 2222 2 11 11 1 2 55555555555 44444 444444 11 11 1 1 222222 11 11 3333333333 1111 111 444444444444 111111 1111 1111 111 11111 111 111111 1111 2222222 2 222 11111 111 666666666666666666666666666666666666666666666666 1111 1111 11 1 3333333 1111 111111 111 1111 11 22222222 222222 2222222 1 22222222222 222222
lowQualScore : 0 1 777 777777 55 8 1 88 3 0 1 777 0 11 1 0 2 0 9 2 2 3333 1 22 999999 1 1 1 6 1 0 1 6 6 444 11 99 1 666 888888 1 000000000 9 0 333 7 555 3 444444 1 7 0 444444 4 0 1 7 2 0 8888888 2 8 0000 33 0 0 22222222 2 0 33 3 33 1 3 0 3 1 6 0 1 3 9999 7 8888 7 6 1 1 999 22 88 1 66 1 1 2 1 1 0 3 6 22222222222 00000 3 111111 3 0 22 33 3 3 1 0 6 111111 22 1 22 22 1 1 1 1111111111 6666 1 555 1 1 2 1 999 3 1 6 6 99 666666666666 6 1 6 99 999999 6 7 7 99 6 7 0 1 6 1 6 5555 2 1 99 6 1 1 6 99 4444 6 1 444 6 44 6 1 1 77777 1 77777 2 111 666666 888 2222 3333333 5 5 2 000 88888 6 7 8888888 8888 000 1 0 1 6 1 999999999999999999999999999999999999999999999999 0 4444 22 4444 77 1 8 8 6 3 6 1 5555555 77 6 6666 6 3 222222 000 2222 999 6 11 1 1 00000000 1 777777 6 5 0000000 6 1 55555555555 1 6 1 77 77 6 000000 6
lowQualScore : . . ... ...... .. . . .. . . . ... . .. . . . . . . . .... . .. ...... . . . . . . . . . ... .. .. . ... ...... . ......... . . ... . ... . ...... . . . ...... . . . . . . ....... . . .... .. . . ........ . . .. . .. . . . . . . . . . .... . .... . . . . ... .. .. . .. . . . . . . . . ........... ..... . ...... . . .. .. . . . . . ...... .. . .. .. . . . .......... .... . ... . . . . ... . . . . .. ............ . . . .. ...... . . . .. . . . . . . . .... . . .. . . . . .. .... . . ... . .. . . . ..... . ..... . ... ...... ... .... ....... . . . ... ..... . . ....... .... ... . . . . . ................................................ . .... .. .... .. . . . . . . . ....... .. . .... . . ...... ... .... ... . .. . . ........ . ...... . . ....... . . ........... . . . .. .. . ...... .
lowQualScore : 2 2 555 222222 88 8 0 00 2 2 0 888 8 88 0 2 5 2 2 5 5 5555 0 00 222222 5 0 0 7 0 7 0 7 7 888 44 00 0 000 000000 4 555555555 2 7 333 3 000 3 333333 0 3 7 777777 2 2 0 0 5 0 5555555 5 8 8888 88 0 2 88888888 5 8 00 2 88 0 7 7 3 0 7 7 0 7 7777 3 3333 3 7 0 0 333 00 55 0 55 0 0 5 0 0 7 3 7 00000000000 33333 7 777777 7 7 77 33 3 3 0 7 7 777777 77 0 33 00 0 0 0 3333333333 3333 0 000 0 0 0 0 333 7 0 7 7 22 333333333333 3 0 7 22 222222 7 5 8 22 3 8 7 0 7 0 7 2222 5 0 22 7 0 0 7 22 2222 7 0 333 4 88 7 5 0 00000 0 33333 5 777 444444 666 1111 7777777 0 7 9 000 77777 6 1 7777777 1111 000 4 7 7 7 0 555555555555555555555555555555555555555555555555 7 2222 22 6666 44 0 0 0 7 3 7 0 8888888 77 7 5555 7 7 000000 888 7777 888 7 88 0 0 33333333 0 000000 7 2 2222222 7 3 88888888888 0 7 0 77 77 7 888888 7
consensus : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAATGCACANATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTCANCGTCAGGN-ACAGCCCCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CAAC-GAGGGA---A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAC----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGT-GAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A---T--TA-CGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTTACN---G--CGAAGAC-AAA-ACCAT---GAAAA----NGCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-GAA-A-CAGAGG-TCC-------TCCN-CCAGCCC-GAACCCGAC-AGCA---CC-CCCCAGCCACCGTGC-NTC--GCC-ATCGACGG-CGTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-A-C-A-TCTC-CAGCA--GATGG--ATCACTGG-ACAAAGAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
Reference ( family-2329 ) : AAGGTCTGCTCGTCAGAAAGAACAAGGCATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGCTCCAAGAATGCACANATTTNAAGTCCCTGCAGGCCCNGATC-CGGCGGGAGATCAGAAAANTGCANGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTCCAACAACTCCAAGNNG------CTTTTCAGTNCNA-TNAAGGCCGTNT-AT-GG-T-CCTTCANAATCAGGN-ACAGCCCCTCTGTTGCT-TCTGCTGACGGTGCC-TGCTCGTCATTCGTCAAGGACA---AGGCAATCATT--CAAC-GAGGGA---A-GGAGCACTTCAGCCAACTNCTTAACCGCCCGTC-ACT--GTCGACCAGTCTGCACTCGAGCGGATNCCTCAACAGCCAGT-C-A---C-AAAGAGCTAGA---TGA--CC-TCCACC---C----GTGGATGAACTCGAGAAG--GCAATCAAGCAGATGAAATGTGGCAAAGNCCCGGGCAAGGACGG-ANT-CCCGCGGAANTGTACAAAGCGC-T-GGCGACAAAGCCTTACATGCA----TTCCATGA-GTCCTNACCAATATNTGGGAGGAGGNNGAAATGCNTGCANGATNTCTNGGACGCCGCNATAGTCGCNCCGTACAAGAA-CAG-GGCT----ACTG---CACAAACTGAC----GAAACTATAGGGGTATATCACTGCTTTCCATCGCC--G--AAAATCCTTGCTCGTATCATCCCGAACAGGCTAATTTCGTCCGCTACCAGAGGAAAACTTC-CC-GAGTCNCGATGCCGCTTCCGCCCC-AGT-GAAAGGCNCACCGTNNACATGATCTTCNCCGNGAGGCAGGTNCAGGAGAAGTGACTCGAGCAAAACATGAACCACTGCCGAGTCNTCAAAGACCGNACGAAGGCNTTCGACACNGTCAACAGAGAAGCACTGTGGGTCATTCTCGGGAAGCTCGGATGCCCTGNAAAGTTCA-CAACA--CTC--A---T--TA-CGGGCTGTTCCATGAT--GACATGAC------GG-GTGANGTTCTGTCCGA--CGGCGAGCCCTCGGAGGGCT-TTGCCAT-CTCAA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCNGTGCTGTTCAACCTCTTCT-T--CACC---CAAGTACTG-CTNCA--CGCTGTGANAGACCTAG-ACATTGGTGTCCGCA-TCAGCTANCGG--CTGGACGG---CTCACTGTTCGACCT------GCG-G-CG----TCTTACA---G--CGAAGAC-AAA-ACCAT---GAAAA----NGCTCATAC--TTG--AAGCC-C--TA---TTTGCCGACGACTGTGCCCTGATGGCCCACAAGGAGAA-CCACCTGC-G---------A-----GTC---A--CGTT------TTC-C-G-----AAGCGT----CCAGGA---TG-ATTGGTCTNACAATCAGTCT-CGG-GAA-A-CAGAGG-TCC-------TCCN-CCAGCCC-GAACCCGAC-AGCA---CC-CCCCAGCCACCGTGC-NTC--GCC-ATCGACGG-CGTCCAGNTGAA--GNA---CGTGGACGCAGTTTTAAGTACC-TGGGCAGC-A-C-A-TCTC-CAGCA--GACGG--CNCNCTGG-ACAAAGAGATTGTNGCCA-GGATCCA-GAAAGCCAG--TC--AAGCACT-GGGCAGACTC
gi|1 : CTGTTAGACGAGAAGAGGAAAGCTTTTATTGATTGGCAAAACCACCCAAACTGCTC----CTCCAGGCGTG-ACAGATACAAAG--ACTACAAAGCCAGAACACAGCGGGAGTTCCGCAACATGCAGAATCAGTGGTGGAAAAGAAAGGCTGAAG---TGCAA--CTATATGCAGACTCCAACAACTCCAAGATG------CTGTTCAGTGCAA-TAAAGGCCATAT-AT-GT-T-CCCTCAACGTCAGGA-ACAGCCCCTCTGT--AT-TCTGCTGA
gi|11 : taaccactgggagtcattagtcacaaacctgcacataggcggctttgggaccagtggtcgtcgtttcttcgaaccaagggcagcggaaaacttcggcagtatcctaggcgactgagcagccttttcaggagcgcactgctcaccctaataaaggagggggctagaaaaggtgccccaaaaaaatgcctgccctacccaatctggccagctaaccgcggctggcaagatctacccatcctgcggtcgaccaaaacagaaaaagaaaatcattgttggaacatggaacgtacgtaaccttttggatcgagacgacgttgcaagacttcggagaaggacggctcttgtagctaaagaactggcaaggtataacattgacattgccgcaatcagtgaaactcggcagtgagtgaatataccttcttctggaagggtaaagcccagaacgaagacaaaatacatggtattgactctgccatcaagacaaaccaaaaaaaaaaacacaaaaaaaaaacaacctccgacagattccgagcctccccactgacaccaacgagaaactcatgaagcttcgtatccctatcagcaacaaccgcttctttaccatcattaccgtctatgccccgactctgactagcacagaggaagtgaaagagcagttttatgttgacctagatgctctgttgcgtactacacccatcaatgacaagcttttagtgttgggtgatttcaacgctagggacagcaaccagtggaaaggggtgatgggaaagcatgggacagggaaaatgaacgggaccgcttgtttctactgagtaaatgtgcccaatacgacttgctgctgaccaatacaaccttcaggcaggttgataagttcaagagaattggatgaacccgcgatctaaacagtggcatcttattgactatatcatcacctgccaacgtgacagcagagatgtcatcttcacaagggcaatgcgaggcgcagattgctggactgatcacagacatgtccgagcaaaactcaacctctgcatcgtcccacaccaccggagacgcccaaagctaattagactcgcattcaacacagcatgccccctctctagcagacaccgccaagatttccaaaccagcagaagaccactcacaggctcgccaaaagaaaagtggagttaattcaaggaagtggtcaccgaaacagccacatcagtattaggcccaaagaagaggtctcaccaagattggtttgacgaaaatgatgcatcagtgcattcaCTTTTTGACCT------CCG-C-CG----TCTCACT---GTCCG--GAC-AAAGACCTTCGAGAAAA----TG---AT-C--TTG--GAGGCAT--TG---TTTGCAGACGACTGTGCCCTCATAGCACACAGAGAAAA-CCACCTGC-A---------A-----GTC---AT-CGTTGACCGGTTCGCAG-----ATGCGG----CCAGAC---TG-TTTGGTATCACAATCAGTCT-CGG-GAA-AACAGAGG-TAG-------TTCAGCCAGCCCCGAAC---AC-AACA---TGGCCCCAGCCA--GT-C-ATC--ACC-ATCGACGG-AGTCCAGATGAA--TTG---TGTGGAC--AGTTTTAAATACC-TGGGCAGC-A-C-AATCTC-C-GCA--GATGG--ATCAATGG-TCAAAGAGATTTTTTCCA-GGATCCA-GAAAGCCAG--CT--AAGCACT-CGGCAGATTC
gi|12 : ccGCAGACTCCAACAACTCCAAGATG------CTGCTCAGAGCAA-AAAAGGCCATAT-AT-GGTT-TCTCCAC-GTCAGGA-ACAGTCCCTCTG-TGC--TCTGTTGACGGTGC------TGTCA-TCATCAAGGACAAAGAGGGAATCATT----GC-TAGGGA---A--GAGCACTTCAGCCAGCTACTTAACCGGCCATCAACT--GTCGACCGGGCTGTGCTACAGCAGATACC---ACAG-AAGT-CTA---CGAAAGAG---GACCTTGA--CC-TTCCCC---CTACTGAAGACGAGGTC-AG-AGCTGCAATAAAACAGATGAAATGTGGCAAAGCCCCAGGGAAGGATGG-ACTCCCCGCAGAAATCTTCAAGGCTC-TGGGAGACATAGCTTTTCAAGCC----TTCTATGACGTCCTCTGCACTATATGGGAGGAAGagagtgaaagtcctgcagcagaaaggaatcatgcttgcgacaaagttgaagatatacagagctgtagtcctct
gi|14 : atAGCTCGGATGCCCTGTAAAGTTTA-CAA-A--CTC--A---T-----CAGGTTGTTC-ATGAT--AACATGA-------GG-ATGATGTCTTGTCCGA--CGGTGAGCCTCAAGAGGGCT-TTGCCAT-TCCA-----TGGAGTGAA--ACAAGGCTGCGTGCTTGCT-C-AGTGATGTTCAACCTCTTCT-TATCAC------AGTACTG-CTCGA---GCTATGAT-GAACTAGTACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGA--T------GCG-GGCG----T-TTAGA---G--CGAAGAC-AAATACCAT---GAAAA-----GCTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGGTCACTGATGGTCa
gi|15 : -A-CAGAGGATCCAAGC---TCCA-CCAGCCC-GAAAC--AC-A--A---CC-AGCCAGCC-CAGTCA-CTC--GCCAATCGACGGAAGTCCAGCTGAA--ATAGTCCGTGG----AATTTTAAAT----T--GC--C-A-C-A-TCTCTCCGCA--GATGG--ATCACTGGAAAAAAGAGATCATT-CCA--GATCCA-GAAAGCAA----C--AAAGATC-GGCCAGAttcggtaagttcgtatgt
gi|16 : CAGACTCCAATAACACCAAGATGGCTTTGCTTTTCAGTGCAAATAAAGGTCATATTACCGG-TTCCCTCAACGTCATGTCACAGCTCCTCTGT-GCC-TCTGCTGACGGTG-C-TGC-CATCATgtgcaacagtcctacagcagataggaatcatgcttgcgacaagctgaagataataca
gi|18 : tatgcCAGTCTGCACTTGAGCGAATTCCTCAACAGCCAGT-C-AT--C-AAAGAGATAGA----GAACCC-TCCATC---T----ATGGGTGACCTCAAAAAG--Gcaa
gi|2 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGC-CCAA-AATGCACATATTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GG-G-CCTTCATAATCTGGC-TCTGTC---CTGTTGCTATCTGTAGACGGAGCCATGCTCATCATTCATCAAGGACA---AGGCTATCA-T--CAAC-GAGAGATTTATGGAGCACTTCAGCCAACTTCTCAACCGCCCGTC--CTTGGTAGACCAGTTTGTACTTGAACGAATCCCTCAACAGCCAGT-C-A---CTGATGAGCTAGA---TAA--CC-TTCACC---C----ATGGATGAACTCAAGAAG--GCCACCAAGCAGATGGCATGTGGGAAAGTTTCGGGCAAGGACGGCAAT-CCAGCGGAGGTGTACAAAACACTT-AGCAACAAGGCCTTACATGCA----TTCCA-GA-GTCTTGACCAATGTTTGGGAAGAGGAAGAAATGCCTGC-TGATATCTAAGACGCAGCGATAGTCGCCCTGAACATGAAGTAG-GGCT----ATTG---CACAAACTGTT----GAAACTATAGGGGTATATCACTGCTTTCCATTGC----------TCCTTGCTCGTATCATCCTGAACAGGCTAATCTCATCCGCTA-CAGAGGAAAATTTCACC-GAGTCTTGATG-CGCTTCCGCTCC-AGTCGAA--GCGCA--GTGGACATGATCTTCTTTGGAAGACAGGTCCAGGAGAAATAACTTGAGCAAAACATGAACCACTGCCGAGTCTTCAAAGACTGCACAAAGGCTTTAAACACTGTCAACAGAGAAG--------------TTCGGGATGCTCGGATGCCCTGAAAAGTTCA-CAACA--CTCTGAGTCT--CATCAGGCTGTTCCATGAT--GACATGAC------GG-GTGCGGTTCTGTCTGA--CGGTGAGCCATCGGAGGGCT-TTGCAAT-CTCAA---ATGGAGTGAA--ACAAGGTTGTGTGCTTGTC-CCCGTGCTGTTCAATTTCTTTT-T--CAAC---CAAGTACTG-CTGCA--CGTTGTGCCAGGCCTAG-ACCTAGGTGTCCACA-TCACATACCGG--CTGGACGG---CTCACTGTTTGACCT------GCT-G-CA----TCTTACT---G--TGAAGAC-AAA-ACCAT---GAAAA----GGTTCATAC--TTC--AAGCC-C--TA---CTTGCCGGTGACTGTGCCCTGATGGCCCAC-AGGAGGA-TCACATGT-G---------A-----A-C---A--CATT------TTC-T-G-----AAGCAT----CCAAGA---TG-ACCGGTCTGACAATTATTCT-CGA-GAA-A-CAGAAG-TCC-------TCCT-TCAGCCC-GCACCTGAC-AGTA---CT-CCCCAGTCACCATGC-TTC--GCC-ATCGACGA-CACACGGATGAA--GAA---CGTCGATGCA--TTCAAGTACT-TGGGCAGC-A--------C-CAGCA-----------CACTGG-ACAAAGAGATTGCAGCCA-AGATCCA-GATAGCCAG--TC--AAGCACT-GGGCAAACTCtc
gi|3 : CTCCTTGCCAGAAAGAACAAAGCATTCATGGAGTGGTAGAATGATCTAG---TCTCT--GCTCCAAGGAAGGATAGGTT-GAAATCCCTCCAGACTCAGA-C-CAACGCGAGATTAGGAGGGTGCAAAACCAGTGGTGGCGGAAGAAG--TGCAGCGGGC---GGCT-------GATATCAACAACATCAAGCAG------TTCTTCAGCTCCA-TCAAGTCCATCT-TT-GG-C-CCTTCAGAAACAGAC-ACCGCAAAACTGTTG---TCAGCAGACGGTACC--GCTC-----TGGTCAAGGACT---AGACAGGCATTTCCAACCGTTGGA---A-GGAGCACTTCAGTCAAACGCTTA----CTCATC-A----GTCGCGCAGTCTGCACTCGACCAGATAGCCCAGCAGCCAATTC-AATCC-AAA---CTAGA---TGA--TCATCCAACTATC----GTGGAT--ACT-GAGAAA--ACAGTCAAGTAGATGAATTGTGGCAAGGACCCTGACATAGATGG-AGTACCCGCAGAATTGTACAGAGTGC-T---CGACAAAGACTCAC-TGCAGGCTTTCCATGAAGTTCTTACTAACATCTAA----AGGTTGA--TGTATACAGGATTTCTTGGATGTCACCATAGTCGCACCGTACAAGAA-CAGTGGCT-----CT------CAAACTGACAGTGGGAACTACAGAGGCATTTCACTGCTTTCAATAGCC--GGCAAAATCCGAGCACGCATCATCCCGAACAAGCTCACTACGTCCA-TACCCGAACAGAACCTC-CCAGAATCCCAATACAGTTTCTGTCC----T-GAAAGGCCCACCATTCACATGATCTTCACCGTGAGGCAAATACAAGAGAAGTGATTCGAGC------T---CTACT----AGTCAT---AGACCGGACGAAGGCGTTCGATACGGTCAACAGAGAAGCACTGTGGGTCATTCTTGGTAAACTAGGCTGCTCGAGGAAGTTCATCAA-A--CTT--A---TAATA-T---CTGTTTCATAAT--GACCCGAC------AG-GAGA-GTACTGTCAGA--TGGATGTCCTTCGGAG----------------AA---AT----T-AA--ATAAGGTTGTGT-CCTGTG-TCAGTGCTGTTCAACCTCTTTT-T--CACC---CAGGTGTTG-CTACA--TGTT
gi|4 : agaaatggaactagtccaaggacattgtgaagtagtcagccgaaacagtactgggaccaaacaatcgcacatatcaagactagttcaatgaaaatgacagcgctgtcgaaaacCTCAGGAAGCTCGGATGCCCTGTAAAGTTTA-CAACA--CTC--A---T-----CAGGTTGTTC-ATGAT--AACATGAC------GG-ATGATGTTCTGTCCGA--CGGTGAGCC-TCAGAGGGCT-TTGCCAT-CTCCA---ATGGAGTGAA--ACAAGGCTGCGTGCTTGCT-CCAGTGCTGTTCAACCTCTTCT-T--TACC---CAAGTACTG-CTTCA--GGCTATGATGAACCTAG-ACATTGGTGTCTTCA-TCAGCTAACGG--------GG---CTCACTGTTCGACCT------GCG-G-CG----TCTTAGA---G--CGAAGAC-AAATACCAT---GAAAA----AGCTCATAC--GTG--AAGCC-C--TA---TTTGCCGATGACTGTGCACTGATGGTCCACAAGGAGAA-TCATC--C-T---------A-----ATC---A--GACT------ATT-G-GGGGAAAATTAT----CC--GA---TGCATAGGTCTGGCAATTAGTCT-CGGAAAA-A-CAGCAG-TCC-------TCCT-TCAGCTT-GAACCTGAC-AGTA---AC-CCCCAGCCACCATGC-AAC--ACC-ATCGAC-G-CACACAGCTGAA--GAA---CGTCGATGCA--TTGAAGTACT-TTGGCAGC-GCC-A-TCTC-CAGC---GATAG--CACTCTGG-ACAAAGAGATTGTAGCCA-GGATCCA-GAAAGCCAG---CAAAAGCACA-CGGCAACCTC
gi|5 : cACTTAA-ACATTGATATATG---TCCGCTATCGC--CTGGACGG---TTCATTGTTCGACCT------TCG-C-CG----TCTCACA---A--CTAAAAC-AGA-GACAT---TAAAAAAACTGCTCAT-C--T----AAGTT-T--TG---TTTGCTGATGACTGTGCCCTGATGGCCCACAAAGAGTA-CAACCTGCAG---------ACGATCGTCGATA--AGTT------CTC-C-G-----TGGCGA----CCAAGC---TG-TTTGGTCTTACAATCAGTGT-GGG-GAAGA-CCGAAG-TTC-------TCCT-CCAGCCT-GCA-CTGATGAGCG---CC-CCACAGCCGCCGTGCATTT--ACC-ATCGACGA-TGTTCAGCTGAA--GAA---CGTAGACGC--CTTTAAGTACC-TATGAAGT-ACC-A-TCTT-TAGCA---ACGG--CCTCTTAG-ATTAGGAAATAGCAGCCC-GAATCCT-GAAAGCCAG--TC--CGGCAAT-GGAAAGACTcacaatcaaagtcttgcagcataaggacattctcctcagaaccaaactaaaggtatgcaatgctgtcgtcctctcgttactgctctatggctgtgaaaccggaccctctaccgcagacatatgaagaagatggaacaattccatacgcactctttgtgtgcaatcatgcaaatacgttagcaggaccgcatcactaaccaagaaatcctggacagagcggataccactactagcgttgaagccaaaatcatccaagctcaacttcgataatctggccatgttatccgtatggaggagtttagaattccatgaaagtttttctatggggagctagagtctggcagtgtcgtccgaaaaaagagtataaagacaacctcaaaaccagcctcaaatggacaggccttgaacctaggcagatcgaatctg
gi|6 : CTGTACAAGAA-CAAAGGCTGAAAACTGACACACAGACTGA------AAACTATAGGAGTATATCCTTACTTTCCATCGCCTGG--AAAATCCTTGCTCGTATCATCCGCAACAGGCTAATTTCATCTATTGC-AGAGGAAAACTTC-CC-GGGTCGCAGTGCCGCTTCCGCCCCCAGT-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGAGAAACATTGTGGATCATTCTCAGGAACCTCAGATGCCCTGCAAAGTTTA-CAACA--TTC--A---T-----CGGACTGTTCCGTGAT--GATATGAC------GG-GCGAAGTTCTGTCTGA--CAGCAAGCCCTCAGAGGGCT-TTGCCAT-CTCCA---ATTGAGTGAC--GCAAAGCTGTGTGATTGCT-CCCGTACTGTTTAA-TTCTTCT-T--TACC---CAAGTACTG-CTTCA--CGCTGTGAGAGACCTAG-ACCATGGTTTCTACA-TCAGTTACCAG--CTTGACGG---CTCATAGTTTAACCT------GCG-G-TG----TCTTATT---T--CCAAGATGAAG-ACCAT---GCAAA----GGCTCATAC--TTG--AAGCC-C--TA---TTTGTCGATGACTGCGCACTGATGGTCCTCAAGGAGAA-TCATCTAC-AGCCTATTGTA-----GAC---A--AGTT------TTC-C-G-----AAGCAT----Cttgctctggaccagagtgttgaaacacaaagacatccgattgtccattaaactcaaaagtgtacaatgcagttgtggtctcttcgctgctgtacggatgtgagacatggaccctctatcgcaagtacatcaagcttttagagcaactccacatgcactctctccgccacatcttgcatatttactggtaggacagaaattccatcctggaggtacacgacacagcggaccctacaaacattgaggcaaaggtgctttgggcacagttacgctggacttgccacatgagccacataaatgattccaggatatccagacaactgttgggctcaacagttgacgggtagtcgcagtcgggtccgaccaaagaagaggtacaaggacaatggcaaggcctacttgtaagtagaccgactttccaccga
gi|8 : cAAATTCA-CCACAGGCTC--A---T--TAACGGCCTCTTCCATGACAGGACATGACTGGACAGGTGTGCGGTTTTGTT-GATACGGAGAACACTTAAACACCTGTTGTTATACTCATTTTACGGAGTAGAGGAGAAGGATGC-TGTTTGCCGCCTGTGCTCTTCAACCG-TTCTAT--CACGGAGCAGGTTCTAACTCCATGCGCT-TGAAAGATC-GG-CCGTAGGTTTACGTAATCAGTTAACTGATCTGGAGGGATTCTT-CTTTTTGACCTCGCGCTGCGTG-CGATTATCTT-CACTTGTCCG--GAC-AAAGACCTTCGAGAAAA----TG---ATGCGTTTGCCGAGCG-CATTAAAGTTTGCAGACGACTGTGCCCTCATAGCACACA-GAAGAAACCACCTTT-G---------A-----GTC---AATCGTTGACCGTTTT-C-G-----CAGCATGCGGCCAGGAGGCTGTATTGGTATCACAATCAGTCTGCGG-GAA-AACAGAGG-TGTAGGGTGTTCAG-CCAGCCC-GA-CACAAC-AACATAGCC-TCTCTGCCA--GT-C-ATCTAACC-ATCGACGG-AGTCCAGATGAATTGT----TGTGGA--CAGTTTTAAATACCTTGGGCAGCTA-CAA-TCTC-C-GCAATGATGGAAATAATTGG-TCAAAGAGATTTTTTCCAGGGATCCATGAAAGCCAGCTTA--AAGCACTCGGGCAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagcctttgacagtaaccctagtctcc
gi|9 : AAGGTCTGCTCGTCAGAAAAAACAAGGTATTCATGGAGTGGCAGAATGACCTGA---GCTCTAAGC-CCAA-AATGCACATATTTTAAGTCCCTGCAGGCCTTGATT-CGGCGGGAAATCAGAAAATTGCATGACCAGCGGTGGGAAAAGAGGGCTGGAGAGGTCCAAGGCT-T-CGCAGACTGTAACAACTCGAAACAG------CTTTTCACTTCCC-TCAAGACAGTCT-AT-GG-G-CCTTCAattc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GTTCACCCGAACAACAAAGACTGCTACAGCAAACCAGGCGGAGGAAATCCATCGAGGGTTCAACGGCTGGTGAGGCGCTGCAGCAAGGCATTAATGAATGCTTAGGGTATTATAGAACACAAAAGACATCATGACCACCCACTGCGGCCAAGGAGGTTACCAGCCGTGACGATTCTCTGTACCAATTGATCAGGGCTTCTGCAGCAGAGAGAGTGGGGTCCCTGTGCAACGGCTTTTCCACTTTAATATCCTTCTCACACAGGATGCGTTGTACGTTCTATAAAGGTCCTGTGGCGACGGGGGATTGGCGAAAGCAACAGGTGGAGGTGACCACTGGGAGTTGTAGTCAGGAACCTGCACGTGGACAGATGTGGTCGCCCCTTCTCTGTACTCAGGGCAGCAGAGAAGTCCGGTAACATCTTTAGGATAGCACTGCTCACCCTAGTAAGGGAGGGACCTAGAAAAGGTGGTCTAAACATTGCCTGTCCTACATTATTTGGCCAATAAGCCGTGGCTGACAGATCTTCCATTCATGCACATGCGGTCGAAGCCAAAGAAGAATAAGGAAACTCTTATGAGGAGCATGGAATGTTCGTACACTTATGGGGCCGAAAACATCACAACAAGACCCCAAAGTAGAACAGTGTATGTTCACAGCAAGACCCCAAAATAGAACAGTAGACACT
Unaligned ( gi|10 ): CTCACTCGAACAACTTGAAAGACTGCTACGGCAGCCCAGGCGGAAGAACCCCAATATCTGGGTCCAACGACTGGGAAGGCGATGCAGCAAGACATTGTGGAATGCTCAGGGCGTAACNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCGTGACAGGAGTATAAAAGACCGCCACGGGCCATCCACTGCAGCCAGAAGAGGTATCAGGCTAATGGTTCTCTTTGCCATTGGGTCAAGGTTTCTTCTGCCGAGAGAGTGGGATTGCCCCCGTGCAACGGTTTCACCTTAATCAAAATCACGCCACAGGTGTCTATAGGACTCAGCTTTCGACCACAATAACGAAGTCTGTGGCAATGGGGGAGTGACAAAGATGGCAGGTGGGAGTAAACACAGGAGTCATTAGTTCACAAGGCCTGCACGTAGGCGCCTTGGACCAGAGGTCGTCGTTTTTCTTTGAACCCAGAG
Unaligned ( gi|13 ): TAATGCTGTTGTCATCTCGTCACTGCTCCATGGCTGTGAAACCTGGACCTTCTACCGCACACACATCAAGCAGCTGCAGAACAGTTCCACACGCGCGCTCTGCGAGCAATCATACGAATACGTTGGCAAGACCAAGTAGTCCTGGACAGAGCGGACACCACTAGCGTTGAAACCAACACCATCCAAGCTCAGTTTTGATGGTCAGTCCACGTTATCCGCATAGAGGAATTCAGAATTCCACGGCAGATTTTCTATGAGTATTTAGCGTCCAGCAGACGCAAAAAGAGGTATAAAGACAACCTCAAAGTCAACAATGAACAATCCCTCAACCTAGGCAGCTAGAATCTGCA
Unaligned ( gi|17 ): CCAGGATCACAGAAGCCAAACAAAGCTATCCCAGAGTGAACAGTTTCCTCAGGAGATAGGAAATCATGCTTGCGACAAAGGCTAAGATATACATGTC
Unaligned ( gi|19 ): CTCTCTCACTCTATATGGCGTGTAGACATGGACCCATCAAAACTGGAGCAATTCCACA