lowQualScore : 222 11 4444444444444444444444444444444444 111 1 11111 1 3333333333 3333333333333333 1 1 555 1 33 1 1 11 22 222
lowQualScore : 2 0 000 88888 6666666 0 99 1111111111111111111111111111111111 1 2 3 3 8 1 666 11 4 2 3 3 222 777 9999 66 1 1 66 6 44444 3 0 2 5555555555 9999999999999999 3 0 3 555 4 0 3 55 5 5 88 2 77 66 111
lowQualScore : . . ... ..... ....... . .. .................................. . . . . . . ... .. . . . . ... ... .... .. . . .. . ..... . . . .......... ................ . . . ... . . . .. . . .. . .. .. ...
lowQualScore : 5 3 333 00000 1111111 7 55 4444444444444444444444444444444444 6 6 6 6 2 0 444 77 0 5 6 6 666 888 4444 11 4 3 99 6 22222 7 7 0 3333333333 7777777777777777 3 7 3 000 0 5 0 55 0 0 55 5 55 55 555
consensus : NNATAACAGAATGTGACGGTNGAAAATACGGCNCGA--A--TTGTCA-AC--AAAG-TTGTGGA-----CATTGC-----TTAN--ACTTA-----GAACAATGTCACCACGTNAA-CG-GNACGTGTT---TGGANGGATGC-GATC-CGGGN--T---ACCA----G--GGATTAACC-TGCAANGAAAGTAAGTTAGCGTCATNCATCATCGATA----GTNTG-ACCTTGAA-CAAAATGTA-CCTTTCGCGTT-CTTTGTT-CTNGAGTNTNTTNTGCACGAAAATGCTTTATTATGAAGCTGGGACACAACGNATCTTCATATTGNNATTTTATAATAAAATCACATGA
Reference ( gi|3 ) : TCATAACAGAATGTGACGGTCGAAAATATGGCCCGA--A--TTGTCA-AC--AAAT-TTGTGGA-----CATTGC-----TTAT--ACTTA-----GGACAATGCCACCATGTAAA-TG-GTACATGTT---TGGATGGGTGC-GATC-CGGGC--T---ACCA----G--GGATTAACT-TGCAACAAAAGTAAGTCAACATCATGCACCATCGATA----GTTTA-ACCTTGAA-GAAAATGTAGCCTCCCACATT-CTCTGTT-CT---ATATTTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
gi|8 : ATAACAGAGTGTGACAATCGACAATTTGGCAAAA--A--TTGTCA-AC--AGAG-TTGTGGA-----CACTGC-----TTAT--ACTTA-----GGACAATGTCACAATGAAAA-TG-GTACATGTT---TGGATGGATGC-GATC-CGGGC--T---ACCA----G--GGTTTAACC-TGTAACAAAAGTAAG
gi|4 : aatatcagaaataagacatcgtaataaaacgtcaatattgctttaAACAGAATGTGACGGTCGAAAATATGGCCCGA--A--TTGTCA-AC--AAAT-TTGTGGA-----CATTG------TTAT--ACTTA-----GGACAATGC-ACCATGTAAAATG-GTACATGTT---TGG-TGGGTGC-GATC-CGGGC--T---ACCA----G--GG-TTAACT-TGCAACAAAAGTAAGTCAACATCATGCACCATCGATA----GTTTA-ACCTTGAA-GAAAATGTAGC--TCCACATTCCTCTGTT-CTA--ATATGTTTTACACGAAAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
gi|1 : AACAGAATGTGACGATCGCAAATATGGCATGA--G--GTGCGA-GC--AAAG-TTGTGGA-----CACTGT-----TTAA--ATTTA-----GAACAATGCCACCACATAAA-TGCGGACATGCT---TGGAAAGATGC-AATCTCAGGTTAT---ATCA----GGAGGATTAACC-TGTAAGAAAAGTGAGT----GTCATTCATCAT-GAAAAAATGTCT--ATCTTGAATCAAAATCT--TCTTTCACGTT-CTTTATTGCTTGAGTTTCTTGTGCATG--AATG-TTTATTATAAAGCTGGGA-AC--CATATCTTCATATTGACATTTT---ATAAAATCACAT
gi|7 : aaaacaatgtttaagcaaaatacctatattgttttcaaaAACAGAATGTGACGGTCGCAGATATGGCACGA--G--ATGTGA-AC--AAAG-TTGTGGA-----TACTG-------TACGGATTTA-----GAACAATGTCACCACATAAA-TG-GGGCGTGCT---TGGAAGGATGC-AATC-CGGGT--T---ATCA----G--GGATTGACA-TGTAATGAAAGTAAATGAGCTGCATACATGATTCATA----ATGTGTACCTTAAA-CA----GCA-CCTTTCGCATT-CTTTGTT-cat
gi|9 : ttttgctttaaaAACAGCATGCGATGATAGAAAGCACGGC--GA--AGGTTGTCA-AG--AGGA-TTGTGGA-----AATTGT-----GCAG--GTCTG-----GCAGAGTGTCATCACGTCAA-CG-GGACGTGTC---TGGATGGATGTAAACC-CGGAT--TCAAACCA----G--G----AACC-TGTAAAGACCGTAAGTTA
gi|10 : AACAGAGTGTGACGGAAGAAAATACGGT--GATGA--CTGT-A-GT--AAGGACTGTGGA-----GCTTGCCTAGATTAT--ACC----------CAATGCCACCACATAAA-CG-GTACATGTC---TTCCCGGATGT-GATG-CTGGG--T---ATAA----A--GGAttatgttatagatatatca
gi|2 : atatttaaacctatcaagctatttcttaaacaatgatcATAGAATGTGACGGGAGGAAATATGGATTTA--G--CTGTCT-AT--ATGA-CTGTGGATCCTGTATTGA-----TCAC--A----------AACAATGTCACCATATCAA-CG-GATCTTGCC---TTCAAGGATGT-GATG-CGGGga
gi|5 : attaggttttaatggaatgagaccatcttttgctgaaacttaaaaggatgtatcttttctataggaagtgtatactgacaaaaaatgttcatccaatatgtcttaaaggtatcgtgacctttgttgaatttttatttATAGAATGTGACGGGAGGAAATACGGATTTG--G--TTGTCT-TT--ATGA-CTGTGGATCCTGTATTGA-----TCAC--A----------AACAATGTCACCATACCAA-CG----CATCTTGCCTTCAAGGATGT-GATG-CGGGatttgaagaggaactttgtaaaactggtatgacctgacatgattaa
gi|12 : catcttttgctgaaactataaaagatgtatcatttctataggaagtgtatactgacaaaaattttcatccaatatgtgttaaaggtatcgtgacgtttgttgaattttgatttCAGAATGTGATAATCGAACGTATGGAATGA--A--TTGTTC-AG--AAAA-CTGTGGA-----TTTTGC-----T-ATGGACT-A-----GAGCAATGTCACCACGTGAA-CG-GAACCTGTT---TGAATGGGTGC-GATC-CTGGA--T---ACAAAGCTG--GG----GCT-TGCAAGGACCGTAAGTTAatttgaaggggaactttgtaaaactggtatggcctggcatggttaaa
gi|13 : aattcAGAATGTGACGGTGGGATGTACGGTGCGG--A--TTG-CACACTTAGA---TGCGG--------TT-C-----CTGT---CTTGACAACAAACAATGTCACCATGTTAA-CG-GCACGTGTT---CTAATGGCTGT-TCTT-CTGGA--T---ACCA----G--Gt
gi|15 : tct-TTGTGGAG----CAT-GC-----CTAA--ATTTA-----GAACTGTGTCACCATGTGAA-TG-GAACGTGTT---TAAAGGGGTGT-GATC-CGGGA--T----TCA----A--GGGTGAATTGTGCAAGGAAAGTA
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): ATATTTCAATAATACACTGATATGCATAATGAAACTATTTGCTTTAAATGTTGTTTTGGAAGACTGTGACAACAGAAAGTATGGCGAAGGTTGTCAGTATGACTGTGGGAAATGTAGAAACATGGCACAGTGTCATCATATAAACGGGGCGTGTCTGAATGGATGTGAACCAGGATTCAAGGAAGGACAATGTGTAGAACGTAAGTAATGGTATTCCTTCTACATGTAC
Unaligned ( gi|11 ): ATATGGAGCGGGTGTAAACAGAGCTGTGGATCGCTGTCTAAATTTCGGAACAATGTCATGCACGTAAACGGGATCTTGGCTTGGATTGGTTGTAAATCCGGCGCTATCAAGTGTAATATGTCAATGACGGTAAATTAAGATAATTGTATTTTTAAACAGCAT
Unaligned ( gi|14 ): CAGGAACGTATGGCAAAGATTGTGGACATCGCTGCAGCATTCAATGCAGAAACATGACATGTGATCCAATCAACGGATTTTGTCTGGAAGGTTGTGCACCCGGGTATTTGGGAA
Unaligned ( gi|16 ): GTAACCATATAGACGGACGTTGTGAACTTGGATGTGATGATGGATTCCGAGGAAGTAAATGTGGGGAAAGTAAGTGTCCAGTTCTGCATG
Unaligned ( gi|17 ): CTAGCACAGTGTCACCACATTAACGGGACGTGTTTAAATGGATGTGAACCCGGATTCAAACCAGGAACCTGCAAAGACAGTATGTATA
Unaligned ( gi|18 ): TAGAATGTGACGGTGGGATGTACGGTGCGGGCTGCACACAAAGATGTGGTTTCTGTCTTGACA
Unaligned ( gi|19 ): TATAAGGTTTTAATAGGAGTGGGACCATCTTTTGCTGAAACTTAAAAGGATG
Alignments
lowQualScore : 111111 1111111111 1111 1111 11111 2222 22 11 111 1 1 3333 2 33
lowQualScore : 1 0 88 77 0 5 0 5 999999 5555555555 444 0000 2 2 5555 2 2 1 33 2 1 2 33 33 2 2 2 2 666 0000 6666 888 55555 66 3 2 5 444 1 6 1111 1 00 22 3 333 3 2 2 0 0 1111 1 1 1 0 3 6 0 0 6 7 1 0 00 22 7 0
lowQualScore : . . .. .. . . . . ...... .......... ... .... . . .... . . . .. . . . .. .. . . . . ... .... .... ... ..... .. . . . ... . . .... . .. .. . ... . . . . . .... . . . . . . . . . . . . .. .. . .
lowQualScore : 0 3 99 99 1 7 9 0 000000 1111111111 777 2222 5 5 3333 5 5 1 55 5 0 8 44 55 5 5 5 5 999 6666 1111 999 00000 33 6 3 7 888 0 5 2222 0 55 55 2 555 2 0 0 0 0 7777 0 0 0 7 7 7 7 7 7 3 0 7 77 00 3 7
consensus : NNATAACAGAATGTGACGGTNGAAAATACGGCGCGAG--TTGTCA-ACAAAG-CTGTGGA-----CATTG-CT-------TA--NACTT-AGA-A-CA----ATGTCA-C-CACGT-NAACG-GNACGT--GTTTGGA-TGGATGC-G-ATC-CGG-G--AT----ACCA----G---G-GATTAACC-TG-CAACGAAAGTAAGTTAACGTCATGCACCATCGATA----GTTTA-ACCTTGAA-NAAAATGTA-CCTTCCACATT-CTCTGTT-CT--AGTATNTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
Reference ( family-2297 ) : NNATAACAGAATGTGACGGTNGAAAATACGGCNCGAA--TTGTCA-ACAAAG-TTGTGGA-----CATTG-CT-------TA--NACTT-AGA-A-CA----ATGTCA-C-CACGT-NAACG-GNACGT--GTTTGGA-NGGATGC-G-ATC-CGG-G--NT----ACCA----G---G-GATTAACC-TG-CAANGAAAGTAAGTTAGCGTCATNCATCATCGATA----GTNTG-ACCTTGAA-CAAAATGTA-CCTTTCGCGTT-CTTTGTT-CTNGAGTNTNTTNTGCACGAAAATGCTTTATTATGAAGCTGGGACACAACGNATCTTCATATTGNNATTTTATAATAAAATCACATGA
gi|1 : AACAGAATGTGACGATCGCAAATATGGCATGAG--GTGCGA-GCAAAG-TTGTGGA-----CACTG-TT-------TA--AATTT-AGA-A-CA----ATGCCA-C-CACAT-AAATGCGGACAT--GCTTGGA-AAGATGC-A-ATCTCAG-GTTAT----ATCA----GGA-G-GATTAACC-TG-TAAGAAAAGTGAGT----GTCATTCATCAT-GAAAAAATGTCT--ATCTTGAATCAAAATCT--TCTTTCACGTT-CTTTATTGCTTGAGTTTCTTGTGCATG--AATG-TTTATTATAAAGCTGGGA-AC--CATATCTTCATATTGACATTTT---ATAAAATCACAT
gi|10 : aaaacaatgtttaagcaaaatacctatattgttttcaaaAACAGAGTGTGACGGAAGAAAATACGGTGATGA--CTGT-A-GTAAGGACTGTGGA-----GCTTG-CC-------TA--GA-TT-ATACC-CA----ATGCCA-C-CACAT-AAACG-GTACAT--GTCTTCC-CGGATGT-G-ATG-CTG-G--GT----ATAA----A---G-GAcat
gi|11 : atatttaaacctatcaagctatttcttaaacaatgatcATATGGAGCGGG--T-GTAA-ACAGAG-CTGTGGAT----CGCTG-TC-------TA--AATTTCGGA-A-CA----ATGTCA-TGCACGT-AAACG-GGATCTTGGCTTGGATTGGTTGTAA-ATC-CGGCG--CT----ATCA----A---GTG--TAATA-TGTCAATGACGGTAAATTAga
gi|12 : CAGAATGTGATAATCGAACGTATGGAATGAA--TTGTTC-AGAAAA-CTGTGGA-----TTTTG-CTA------TG--GACT--AGA-G-CA----ATGTCA-C-CACGT-GAACG-GAACCT--GTTTGAA-TGGGTGC-G-ATC-CTG-G--AT----ACAAAGCTG---G-G----GCT-TG-CAAGGACCGTAAGTTAagataattgtatttttaaacagcat
gi|13 : aattcAGAATGTGACGGTGGGATGTACGGTGCGGA--TTG-CACACTTAG-ATGCGGT-----TCCTGTCT-------TGACAAC----AA-A-CA----ATGTCA-C-CATGT-TAACG-GCACGT--GTTCTAA-TGGCTGT-T-CTT-CTG-G--AT----ACCA----G---G-t
gi|14 : tctCAAAGATTGTGGA-----CATCG-CTGCAGCATTC--AATGC-AGA-AACATGACATGTGATC-CA-AT-CAACG-GATTTT--GTCTGGA-AGGTTGT-GCACC-CGG-G---T----ATTT----G---G-GA
gi|15 : caggaacgtatgg-TTGTGGAG----CAT-G-CC-------TA--AATTT-AGA-A-CT----GTGTCA-C-CATGT-GAATG-GAACGT--GTTTAAA-GGGGTGT-G-ATC-CGG-G--AT-----TCA----A---G-GGTGAATTGTG-CAAGGAAAGTAa
gi|17 : T-AGC-A-CA----GTGTCA-C-CACAT-TAACG-GGACGT--GTTTAAA-TGGATGT-G-AAC-CCG-G--ATTCAAACCA----G---G-----AACC-TG-CAAAGACAGTATGTt
gi|18 : cAGAATGTGACGGTGGGATGTACGGTGCGGG--CTG-CACACAAAG-ATGTGGata
gi|2 : tATAGAATGTGACGGGAGGAAATATGGATTTAG--CTGTCT-ATATGA-CTGTGGATCCTGTATTG-AT-------CA--CA------A-A-CA----ATGTCA-C-CATAT-CAACG-GATCTT--GCCTTCA-AGGATGT-G-ATG-CGG-G--AT----tttctgtcttgaca
gi|3 : attaggttttaatggaatgagaccatcttttgctgaaacttaaaaggatgtatcttttctataggaagtgtatactgacaaaaaatgttcatccaatatgtcttaaaggtatcgtgacctttgttgaatttttatttATAACAGAATGTGACGGTCGAAAATATGGCCCGAA--TTGTCA-ACAAAT-TTGTGGA-----CATTG-CT-------TA--TACTT-AGG-A-CA----ATGCCA-C-CATGT-AAATG-GTACAT--GTTTGGA-TGGGTGC-G-ATC-CGG-G--CT----ACCA----G---G-GATTAACT-TG-CAACAAAAGTAAGTCAACATCATGCACCATCGATA----GTTTA-ACCTTGAA-GAAAATGTAGCCTCCCACATT-CTCTGTT-CTA---TATTTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGAttgaagaggaactttgtaaaactggtatgacctgacatgattaa
gi|4 : tcAACAGAATGTGACGGTCGAAAATATGGCCCGAA--TTGTCA-ACAAAT-TTGTGGA-----CATTG--T-------TA--TACTT-AGG-A-CA----ATG-CA-C-CATGTAAAATG-GTACAT--GTTTGG--TGGGTGC-G-ATC-CGG-G--CT----ACCA----G---G-G-TTAACT-TG-CAACAAAAGTAAGTCAACATCATGCACCATCGATA----GTTTA-ACCTTGAA-GAAAATGTA-GC-TCCACATTCCTCTGTT-CT--AATATGTTTTACACGAAAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
gi|5 : ATAGAATGTGACGGGAGGAAATACGGATTTGG--TTGTCT-TTATGA-CTGTGGATCCTGTATTG-AT-------CA--CA------A-A-CA----ATGTCA-C-CATAC-CAACG-CATCTT--GCCTTCA-AGGATGT-G-ATG-CGG-G--AT----
gi|6 : catcttttgctgaaactataaaagatgtatcatttctataggaagtgtatactgacaaaaattttcatccaatatgtgttaaaggtatcgtgacgtttgttgaattttgatttAGACTGTGACAACAGAAAGTATGG--CGAAGGTTGTCA-GTATGA-CTGTGGG-----AAATG-TA-------GA--AACAT-GGC-A-CA----GTGTCA-T-CATAT-AAACG-GGGCGT--GTCTGAA-TGGATGT-G-AAC-CAG-G--AT----TCAA----GGAAG-GA-CAATG-TG-TA--GAACGTAAGTttgaaggggaactttgtaaaactggtatggcctggcatggttaaa
gi|7 : atatttcaataatacactgatatgcataatgaaactatttgctttaaatgttgttttggaAACAGAATGTGACGGTCGCAGATATGGCACGAG--ATGTGA-ACAAAG-TTGTGGA-----TACTG-TA-------CG--GATTT-AGA-A-CA----ATGTCA-C-CACAT-AAATG-GGGCGT--GCTTGGA-AGGATGC-A-ATC-CGG-G--TT----ATCA----G---G-GATTGACA-TG-TAATGAAAGTAAATGAGCTGCATACATGATTCATA----ATGTGTACCTTAAA-CA----GCA-CCTTTCGCATT-CTTTGTT-aatggtattccttctacatgtac
gi|8 : ttttgctttaaaATAACAGAGTGTGACAATCGACAATTTGGCAAAAA--TTGTCA-ACAGAG-TTGTGGA-----CACTG-CT-------TA--TACTT-AGG-A-CA----ATGTCA-C-AATGA-AAATG-GTACAT--GTTTGGA-TGGATGC-G-ATC-CGG-G--CT----ACCA----G---G-GTTTAACC-TG-TAACAAAAGTAAG
gi|9 : aatatcagaaataagacatcgtaataaaacgtcaatattgctttaAACAGCATGCGATGATAGAAAGCACGGC--GAAGGTTGTCA-AGAGGA-TTGTGGA-----AATTG-TG-------CA--GGTCT-GGC-A-GA----GTGTCA-T-CACGT-CAACG-GGACGT--GTCTGGA-TGGATGT-A-AAC-CCG-G--ATTCAAACCA----G---G-----AACC-TG-TAAAGACCGTAAGTTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTAACCATATAGACGGACGTTGTGAACTTGGATGTGATGATGGATTCCGAGGAAGTAAATGTGGGGAAAGTAAGTGTCCAGTTCTGCATG
Unaligned ( gi|19 ): TATAAGGTTTTAATAGGAGTGGGACCATCTTTTGCTGAAACTTAAAAGGATG
Alignments
lowQualScore : 222222 1111 11111 2222 11 11 111 1 1 2222 22 11
lowQualScore : 1 0 6666 0 5 1 33 111111 8888 444 9999 2 2 1 2 2 1 2 33 0 33 2 2 0 2 333 1111 99999999 77777 66 3 6 8888 1 0 6 1111 0 77 11 3 333 3 0 0 1111 1 00 6 6 7 88 7
lowQualScore : . . .... . . . .. ...... .... ... .... . . . . . . . .. . .. . . . . ... .... ........ ..... .. . . .... . . . .... . .. .. . ... . . . .... . .. . . . .. .
lowQualScore : 0 3 2222 1 7 6 33 111111 2222 999 0000 7 7 0 7 7 0 0 77 3 22 7 7 5 7 888 3333 88888888 33333 33 6 5 0000 4 2 5 2222 8 00 00 2 555 2 0 0 3333 0 77 7 7 3 33 3
consensus : NNATAACAGAATGTGACGGTNGAAAATACGGCG-CGGGTTGTCA-ACANAG-CTGTGGA-----CATTG-CT-TA--NACTT-AGA-ACAATGTCAC-CACGTAAA-CG-GNACGT--GTTTGGA-TGGATGC-GATC-CGG-G--AT----ACCA----G---G-GATTAACC-TG-CAACGAAAGTAAGTTA--ACGTCATGCACCATCGATA----GTTTA-ACCTTGAA-NAAAATGTA-CCTTCCACATT-CTCTGTT-CT--AGTATNTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
Reference ( family-2297 ) : NNATAACAGAATGTGACGGTNGAAAATACGGCG-CGAGTTGTCA-ACAAAG-CTGTGGA-----CATTG-CT-TA--NACTT-AGA-ACAATGTCAC-CACGTNAA-CG-GNACGT--GTTTGGA-TGGATGC-GATC-CGG-G--AT----ACCA----G---G-GATTAACC-TG-CAACGAAAGTAAGTTA--ACGTCATGCACCATCGATA----GTTTA-ACCTTGAA-NAAAATGTA-CCTTCCACATT-CTCTGTT-CT--AGTATNTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
gi|1 : AACAGAATGTGACGATCGCAAATATGGCA-TGAGGTGCGA-GCAAAG-TTGTGGA-----CACTG-TT-TA--AATTT-AGA-ACAATGCCAC-CACATAAA-TGCGGACAT--GCTTGGA-AAGATGC-AATCTCAG-GTTAT----ATCA----GGA-G-GATTAACC-TG-TAAGAAAAGTGAGT------GTCATTCATCAT-GAAAAAATGTCT--ATCTTGAATCAAAATCT--TCTTTCACGTT-CTTTATTGCTTGAGTTTCTTGTGCATG--AATG-TTTATTATAAAGCTGGGA-AC--CATATCTTCATATTGACATTTT---ATAAAATCACAT
gi|10 : aaaacaatgtttaagcaaaatacctatattgttttcaaaAACAGAGTGTGACGGAAGAAAATACGGTGATGA-CTGT-A-GTAAGGACTGTGGA-----GCTTG-CC-TA--GA-TT-ATACCCAATGCCAC-CACATAAA-CG-GTACAT--GTCTTCC-CGGATGT-GATG-CTG-G--GT----ATAA----A---G-GAcat
gi|11 : atatttaaacctatcaagctatttcttaaacaatgatcATATGGAG-CGGGT-GTAA-ACAGAG-CTGTGGAT----CGCTG-TC-TA--AATTTCGGA-ACAATGTCATGCACGTAAA-CG-GGATCTTGGCTTGGATTGGTTGTAAATC-CGGCG--CT----ATCA----A---GTG--TAATA-TGTCAATGACGGTAAATTA--Aga
gi|12 : CAGAATGTGATAATCGAACGTATGGAA-TGAATTGTTC-AGAAAA-CTGTGGA-----TTTTG-CTATG--GACT--AGA-GCAATGTCAC-CACGTGAA-CG-GAACCT--GTTTGAA-TGGGTGC-GATC-CTG-G--AT----ACAAAGCTG---G-G----GCT-TG-CAAGGACCGTAAGTTA--gataattgtatttttaaacagcat
gi|13 : aattcAGAATGTGACGGTGGGATGTACGGTG-CGGATTG-CACACTTAG-ATGCGGT-----TCCTGTCT-TGACAAC----AA-ACAATGTCAC-CATGTTAA-CG-GCACGT--GTTCTAA-TGGCTGT-TCTT-CTG-G--AT----ACCA----G---G-t
gi|15 : tctTGTGGAG----CAT-G-CC-TA--AATTT-AGA-ACTGTGTCAC-CATGTGAA-TG-GAACGT--GTTTAAA-GGGGTGT-GATC-CGG-G--AT-----TCA----A---G-GGTGAATTGTG-CAAGGAAAGTA
gi|17 : tT-AGC-ACAGTGTCAC-CACATTAA-CG-GGACGT--GTTTAAA-TGGATGT-GAAC-CCG-G--ATTCAAACCA----G---G-----AACC-TG-CAAAGACAGTATGTt
gi|18 : cAGAATGTGACGGTGGGATGTACGGTG-CGGGCTG-CACACAAAG-ATGTGGata
gi|2 : tATAGAATGTGACGGGAGGAAATATGGAT-TTAGCTGTCT-ATATGA-CTGTGGATCCTGTATTG-AT-CA--CA------A-ACAATGTCAC-CATATCAA-CG-GATCTT--GCCTTCA-AGGATGT-GATG-CGG-G--AT----tttctgtcttgaca
gi|3 : attaggttttaatggaatgagaccatcttttgctgaaacttaaaaggatgtatcttttctataggaagtgtatactgacaaaaaatgttcatccaatatgtcttaaaggtatcgtgacctttgttgaatttttatttATAACAGAATGTGACGGTCGAAAATATGGCC-CGAATTGTCA-ACAAAT-TTGTGGA-----CATTG-CT-TA--TACTT-AGG-ACAATGCCAC-CATGTAAA-TG-GTACAT--GTTTGGA-TGGGTGC-GATC-CGG-G--CT----ACCA----G---G-GATTAACT-TG-CAACAAAAGTAAGTCA--ACATCATGCACCATCGATA----GTTTA-ACCTTGAA-GAAAATGTAGCCTCCCACATT-CTCTGTT-CT--A-TATTTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGAttgaagaggaactttgtaaaactggtatgacctgacatgattaa
gi|4 : tcAACAGAATGTGACGGTCGAAAATATGGCC-CGAATTGTCA-ACAAAT-TTGTGGA-----CATTG--T-TA--TACTT-AGG-ACAATG-CAC-CATGTAAAATG-GTACAT--GTTTGG--TGGGTGC-GATC-CGG-G--CT----ACCA----G---G-G-TTAACT-TG-CAACAAAAGTAAGTCA--ACATCATGCACCATCGATA----GTTTA-ACCTTGAA-GAAAATGTA-GC-TCCACATTCCTCTGTT-CT--AATATGTTTTACACGAAAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
gi|5 : ATAGAATGTGACGGGAGGAAATACGGAT-TTGGTTGTCT-TTATGA-CTGTGGATCCTGTATTG-AT-CA--CA------A-ACAATGTCAC-CATACCAA-CG-CATCTT--GCCTTCA-AGGATGT-GATG-CGG-G--AT----
gi|6 : catcttttgctgaaactataaaagatgtatcatttctataggaagtgtatactgacaaaaattttcatccaatatgtgttaaaggtatcgtgacgtttgttgaattttgatttAGACTGTGACAACAGAAAGTATGGCG-AAGGTTGTCA-GTATGA-CTGTGGG-----AAATG-TA-GA--AACAT-GGC-ACAGTGTCAT-CATATAAA-CG-GGGCGT--GTCTGAA-TGGATGT-GAAC-CAG-G--AT----TCAA----GGAAG-GA-CAATG-TG-TA--GAACGTAAGTttgaaggggaactttgtaaaactggtatggcctggcatggttaaa
gi|7 : atatttcaataatacactgatatgcataatgaaactatttgctttaaatgttgttttggaAACAGAATGTGACGGTCGCAGATATGGCA-CGAGATGTGA-ACAAAG-TTGTGGA-----TACTG-TA-CG--GATTT-AGA-ACAATGTCAC-CACATAAA-TG-GGGCGT--GCTTGGA-AGGATGC-AATC-CGG-G--TT----ATCA----G---G-GATTGACA-TG-TAATGAAAGTAAATGA--GCTGCATACATGATTCATA----ATGTGTACCTTAAA-CA----GCA-CCTTTCGCATT-CTTTGTT-aatggtattccttctacatgtac
gi|8 : ttttgctttaaaATAACAGAGTGTGACAATCGACAATTTGGCA-AAAATTGTCA-ACAGAG-TTGTGGA-----CACTG-CT-TA--TACTT-AGG-ACAATGTCAC-AATGAAAA-TG-GTACAT--GTTTGGA-TGGATGC-GATC-CGG-G--CT----ACCA----G---G-GTTTAACC-TG-TAACAAAAGTAAG
gi|9 : aatatcagaaataagacatcgtaataaaacgtcaatattgctttaAACAGCATGCGATGATAGAAAGCACGGCG-AAGGTTGTCA-AGAGGA-TTGTGGA-----AATTG-TG-CA--GGTCT-GGC-AGAGTGTCAT-CACGTCAA-CG-GGACGT--GTCTGGA-TGGATGT-AAAC-CCG-G--ATTCAAACCA----G---G-----AACC-TG-TAAAGACCGTAAGTTATTATGTTAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAGGAACGTATGGCAAAGATTGTGGACATCGCTGCAGCATTCAATGCAGAAACATGACATGTGATCCAATCAACGGATTTTGTCTGGAAGGTTGTGCACCCGGGTATTTGGGAA
Unaligned ( gi|16 ): GTAACCATATAGACGGACGTTGTGAACTTGGATGTGATGATGGATTCCGAGGAAGTAAATGTGGGGAAAGTAAGTGTCCAGTTCTGCATG
Unaligned ( gi|19 ): TATAAGGTTTTAATAGGAGTGGGACCATCTTTTGCTGAAACTTAAAAGGATG
Alignments
lowQualScore : 222222 1111 11111 2222 11 11 111 1 1 2222 22 11
lowQualScore : 1 0 444 0 5 1 33 111111 8888 444 9999 2 2 1 2 2 1 2 33 0 33 2 2 0 2 333 1111 99999999 77777 66 3 6 8888 1 0 6 1111 0 77 11 3 333 3 0 0 1111 1 00 6 6 7 88 7
lowQualScore : . . ... . . . .. ...... .... ... .... . . . . . . . .. . .. . . . . ... .... ........ ..... .. . . .... . . . .... . .. .. . ... . . . .... . .. . . . .. .
lowQualScore : 0 3 000 1 7 0 33 111111 2222 999 0000 7 7 3 7 7 0 0 77 3 22 7 7 5 7 888 3333 88888888 33333 33 6 5 0000 4 2 5 2222 8 00 00 2 555 2 0 0 3333 0 77 7 7 3 33 3
consensus : NNATAACAGAATGTGACGGTNGAAAATACGGCGCGGGTTGTCA-ACANAG-CTGTGGA-----CATTG-CT-TA--NACTT-AGA-ACAATGTCAC-CACGTAAA-CG-GNACGT--GTTTGGA-TGGATGC-GATC-CGG-G--AT----ACCA----G---G-GATTAACC-TG-CAACGAAAGTAAGTTA--ACGTCATGCACCATCGATA----GTTTA-ACCTTGAA-NAAAATGTA-CCTTCCACATT-CTCTGTT-CT--AGTATNTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
Reference ( family-2297 ) : NNATAACAGAATGTGACGGTNGAAAATACGGCGCGGGTTGTCA-ACANAG-CTGTGGA-----CATTG-CT-TA--NACTT-AGA-ACAATGTCAC-CACGTAAA-CG-GNACGT--GTTTGGA-TGGATGC-GATC-CGG-G--AT----ACCA----G---G-GATTAACC-TG-CAACGAAAGTAAGTTA--ACGTCATGCACCATCGATA----GTTTA-ACCTTGAA-NAAAATGTA-CCTTCCACATT-CTCTGTT-CT--AGTATNTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
gi|1 : AACAGAATGTGACGATCGCAAATATGGCATGAGGTGCGA-GCAAAG-TTGTGGA-----CACTG-TT-TA--AATTT-AGA-ACAATGCCAC-CACATAAA-TGCGGACAT--GCTTGGA-AAGATGC-AATCTCAG-GTTAT----ATCA----GGA-G-GATTAACC-TG-TAAGAAAAGTGAGT------GTCATTCATCAT-GAAAAAATGTCT--ATCTTGAATCAAAATCT--TCTTTCACGTT-CTTTATTGCTTGAGTTTCTTGTGCATG--AATG-TTTATTATAAAGCTGGGA-AC--CATATCTTCATATTGACATTTT---ATAAAATCACAT
gi|10 : aaaacaatgtttaagcaaaatacctatattgttttcaaaAACAGAGTGTGACGGAAGAAAATACGGTGATGACTGT-A-GTAAGGACTGTGGA-----GCTTG-CC-TA--GA-TT-ATACCCAATGCCAC-CACATAAA-CG-GTACAT--GTCTTCC-CGGATGT-GATG-CTG-G--GT----ATAA----A---G-GAcat
gi|11 : atatttaaacctatcaagctatttcttaaacaatgatcATATGGAGCGGGT-GTAA-ACAGAG-CTGTGGAT----CGCTG-TC-TA--AATTTCGGA-ACAATGTCATGCACGTAAA-CG-GGATCTTGGCTTGGATTGGTTGTAAATC-CGGCG--CT----ATCA----A---GTG--TAATA-TGTCAATGACGGTAAATTA--Aga
gi|12 : CAGAATGTGATAATCGAACGTATGGAATGAATTGTTC-AGAAAA-CTGTGGA-----TTTTG-CTATG--GACT--AGA-GCAATGTCAC-CACGTGAA-CG-GAACCT--GTTTGAA-TGGGTGC-GATC-CTG-G--AT----ACAAAGCTG---G-G----GCT-TG-CAAGGACCGTAAGTTA--gataattgtatttttaaacagcat
gi|13 : aattcAGAATGTGACGGTGGGATGTACGGTGCGGATTG-CACACTTAG-ATGCGGT-----TCCTGTCT-TGACAAC----AA-ACAATGTCAC-CATGTTAA-CG-GCACGT--GTTCTAA-TGGCTGT-TCTT-CTG-G--AT----ACCA----G---G-t
gi|15 : tctTGTGGAG----CAT-G-CC-TA--AATTT-AGA-ACTGTGTCAC-CATGTGAA-TG-GAACGT--GTTTAAA-GGGGTGT-GATC-CGG-G--AT-----TCA----A---G-GGTGAATTGTG-CAAGGAAAGTA
gi|17 : tT-AGC-ACAGTGTCAC-CACATTAA-CG-GGACGT--GTTTAAA-TGGATGT-GAAC-CCG-G--ATTCAAACCA----G---G-----AACC-TG-CAAAGACAGTATGTt
gi|18 : cAGAATGTGACGGTGGGATGTACGGTGCGGGCTG-CACACAAAG-ATGTGGata
gi|2 : tATAGAATGTGACGGGAGGAAATATGGATTTAGCTGTCT-ATATGA-CTGTGGATCCTGTATTG-AT-CA--CA------A-ACAATGTCAC-CATATCAA-CG-GATCTT--GCCTTCA-AGGATGT-GATG-CGG-G--AT----tttctgtcttgaca
gi|3 : attaggttttaatggaatgagaccatcttttgctgaaacttaaaaggatgtatcttttctataggaagtgtatactgacaaaaaatgttcatccaatatgtcttaaaggtatcgtgacctttgttgaatttttatttATAACAGAATGTGACGGTCGAAAATATGGCCCGAATTGTCA-ACAAAT-TTGTGGA-----CATTG-CT-TA--TACTT-AGG-ACAATGCCAC-CATGTAAA-TG-GTACAT--GTTTGGA-TGGGTGC-GATC-CGG-G--CT----ACCA----G---G-GATTAACT-TG-CAACAAAAGTAAGTCA--ACATCATGCACCATCGATA----GTTTA-ACCTTGAA-GAAAATGTAGCCTCCCACATT-CTCTGTT-CT--A-TATTTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGAttgaagaggaactttgtaaaactggtatgacctgacatgattaa
gi|4 : tcAACAGAATGTGACGGTCGAAAATATGGCCCGAATTGTCA-ACAAAT-TTGTGGA-----CATTG--T-TA--TACTT-AGG-ACAATG-CAC-CATGTAAAATG-GTACAT--GTTTGG--TGGGTGC-GATC-CGG-G--CT----ACCA----G---G-G-TTAACT-TG-CAACAAAAGTAAGTCA--ACATCATGCACCATCGATA----GTTTA-ACCTTGAA-GAAAATGTA-GC-TCCACATTCCTCTGTT-CT--AATATGTTTTACACGAAAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
gi|5 : ATAGAATGTGACGGGAGGAAATACGGATTTGGTTGTCT-TTATGA-CTGTGGATCCTGTATTG-AT-CA--CA------A-ACAATGTCAC-CATACCAA-CG-CATCTT--GCCTTCA-AGGATGT-GATG-CGG-G--AT----
gi|6 : catcttttgctgaaactataaaagatgtatcatttctataggaagtgtatactgacaaaaattttcatccaatatgtgttaaaggtatcgtgacgtttgttgaattttgatttAGACTGTGACAACAGAAAGTATGGCGAAGGTTGTCA-GTATGA-CTGTGGG-----AAATG-TA-GA--AACAT-GGC-ACAGTGTCAT-CATATAAA-CG-GGGCGT--GTCTGAA-TGGATGT-GAAC-CAG-G--AT----TCAA----GGAAG-GA-CAATG-TG-TA--GAACGTAAGTttgaaggggaactttgtaaaactggtatggcctggcatggttaaa
gi|7 : atatttcaataatacactgatatgcataatgaaactatttgctttaaatgttgttttggaAACAGAATGTGACGGTCGCAGATATGGCACGAGATGTGA-ACAAAG-TTGTGGA-----TACTG-TA-CG--GATTT-AGA-ACAATGTCAC-CACATAAA-TG-GGGCGT--GCTTGGA-AGGATGC-AATC-CGG-G--TT----ATCA----G---G-GATTGACA-TG-TAATGAAAGTAAATGA--GCTGCATACATGATTCATA----ATGTGTACCTTAAA-CA----GCA-CCTTTCGCATT-CTTTGTT-aatggtattccttctacatgtac
gi|8 : ttttgctttaaaATAACAGAGTGTGACAATCGACAATTTGGCAAAAATTGTCA-ACAGAG-TTGTGGA-----CACTG-CT-TA--TACTT-AGG-ACAATGTCAC-AATGAAAA-TG-GTACAT--GTTTGGA-TGGATGC-GATC-CGG-G--CT----ACCA----G---G-GTTTAACC-TG-TAACAAAAGTAAG
gi|9 : aatatcagaaataagacatcgtaataaaacgtcaatattgctttaAACAGCATGCGATGATAGAAAGCACGGCGAAGGTTGTCA-AGAGGA-TTGTGGA-----AATTG-TG-CA--GGTCT-GGC-AGAGTGTCAT-CACGTCAA-CG-GGACGT--GTCTGGA-TGGATGT-AAAC-CCG-G--ATTCAAACCA----G---G-----AACC-TG-TAAAGACCGTAAGTTATTATGTTAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAGGAACGTATGGCAAAGATTGTGGACATCGCTGCAGCATTCAATGCAGAAACATGACATGTGATCCAATCAACGGATTTTGTCTGGAAGGTTGTGCACCCGGGTATTTGGGAA
Unaligned ( gi|16 ): GTAACCATATAGACGGACGTTGTGAACTTGGATGTGATGATGGATTCCGAGGAAGTAAATGTGGGGAAAGTAAGTGTCCAGTTCTGCATG
Unaligned ( gi|19 ): TATAAGGTTTTAATAGGAGTGGGACCATCTTTTGCTGAAACTTAAAAGGATG
Alignments
lowQualScore : 222222 1111 11111 2222 11 11 111 1 1 2222 22 11
lowQualScore : 1 0 444 0 5 1 33 111111 8888 444 9999 2 2 1 2 2 1 2 33 0 33 2 2 0 2 333 1111 99999999 77777 66 3 6 8888 1 0 6 1111 0 77 11 3 333 3 0 0 1111 1 00 6 6 7 88 7
lowQualScore : . . ... . . . .. ...... .... ... .... . . . . . . . .. . .. . . . . ... .... ........ ..... .. . . .... . . . .... . .. .. . ... . . . .... . .. . . . .. .
lowQualScore : 0 3 000 1 7 0 33 111111 2222 999 0000 7 7 3 7 7 0 0 77 3 22 7 7 5 7 888 3333 88888888 33333 33 6 5 0000 4 2 5 2222 8 00 00 2 555 2 0 0 3333 0 77 7 7 3 33 3
consensus : NNATAACAGAATGTGACGGTNGAAAATACGGCGCGGGTTGTCA-ACANAG-CTGTGGA-----CATTG-CT-TA--NACTT-AGA-ACAATGTCAC-CACGTAAA-CG-GNACGT--GTTTGGA-TGGATGC-GATC-CGG-G--AT----ACCA----G---G-GATTAACC-TG-CAACGAAAGTAAGTTA--ACGTCATGCACCATCGATA----GTTTA-ACCTTGAA-NAAAATGTA-CCTTCCACATT-CTCTGTT-CT--AGTATNTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
Reference ( family-2297 ) : NNATAACAGAATGTGACGGTNGAAAATACGGCGCGGGTTGTCA-ACANAG-CTGTGGA-----CATTG-CT-TA--NACTT-AGA-ACAATGTCAC-CACGTAAA-CG-GNACGT--GTTTGGA-TGGATGC-GATC-CGG-G--AT----ACCA----G---G-GATTAACC-TG-CAACGAAAGTAAGTTA--ACGTCATGCACCATCGATA----GTTTA-ACCTTGAA-NAAAATGTA-CCTTCCACATT-CTCTGTT-CT--AGTATNTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
gi|1 : AACAGAATGTGACGATCGCAAATATGGCATGAGGTGCGA-GCAAAG-TTGTGGA-----CACTG-TT-TA--AATTT-AGA-ACAATGCCAC-CACATAAA-TGCGGACAT--GCTTGGA-AAGATGC-AATCTCAG-GTTAT----ATCA----GGA-G-GATTAACC-TG-TAAGAAAAGTGAGT------GTCATTCATCAT-GAAAAAATGTCT--ATCTTGAATCAAAATCT--TCTTTCACGTT-CTTTATTGCTTGAGTTTCTTGTGCATG--AATG-TTTATTATAAAGCTGGGA-AC--CATATCTTCATATTGACATTTT---ATAAAATCACAT
gi|10 : aaaacaatgtttaagcaaaatacctatattgttttcaaaAACAGAGTGTGACGGAAGAAAATACGGTGATGACTGT-A-GTAAGGACTGTGGA-----GCTTG-CC-TA--GA-TT-ATACCCAATGCCAC-CACATAAA-CG-GTACAT--GTCTTCC-CGGATGT-GATG-CTG-G--GT----ATAA----A---G-GAcat
gi|11 : atatttaaacctatcaagctatttcttaaacaatgatcATATGGAGCGGGT-GTAA-ACAGAG-CTGTGGAT----CGCTG-TC-TA--AATTTCGGA-ACAATGTCATGCACGTAAA-CG-GGATCTTGGCTTGGATTGGTTGTAAATC-CGGCG--CT----ATCA----A---GTG--TAATA-TGTCAATGACGGTAAATTA--Aga
gi|12 : CAGAATGTGATAATCGAACGTATGGAATGAATTGTTC-AGAAAA-CTGTGGA-----TTTTG-CTATG--GACT--AGA-GCAATGTCAC-CACGTGAA-CG-GAACCT--GTTTGAA-TGGGTGC-GATC-CTG-G--AT----ACAAAGCTG---G-G----GCT-TG-CAAGGACCGTAAGTTA--gataattgtatttttaaacagcat
gi|13 : aattcAGAATGTGACGGTGGGATGTACGGTGCGGATTG-CACACTTAG-ATGCGGT-----TCCTGTCT-TGACAAC----AA-ACAATGTCAC-CATGTTAA-CG-GCACGT--GTTCTAA-TGGCTGT-TCTT-CTG-G--AT----ACCA----G---G-t
gi|15 : tctTGTGGAG----CAT-G-CC-TA--AATTT-AGA-ACTGTGTCAC-CATGTGAA-TG-GAACGT--GTTTAAA-GGGGTGT-GATC-CGG-G--AT-----TCA----A---G-GGTGAATTGTG-CAAGGAAAGTA
gi|17 : tT-AGC-ACAGTGTCAC-CACATTAA-CG-GGACGT--GTTTAAA-TGGATGT-GAAC-CCG-G--ATTCAAACCA----G---G-----AACC-TG-CAAAGACAGTATGTt
gi|18 : cAGAATGTGACGGTGGGATGTACGGTGCGGGCTG-CACACAAAG-ATGTGGata
gi|2 : tATAGAATGTGACGGGAGGAAATATGGATTTAGCTGTCT-ATATGA-CTGTGGATCCTGTATTG-AT-CA--CA------A-ACAATGTCAC-CATATCAA-CG-GATCTT--GCCTTCA-AGGATGT-GATG-CGG-G--AT----tttctgtcttgaca
gi|3 : attaggttttaatggaatgagaccatcttttgctgaaacttaaaaggatgtatcttttctataggaagtgtatactgacaaaaaatgttcatccaatatgtcttaaaggtatcgtgacctttgttgaatttttatttATAACAGAATGTGACGGTCGAAAATATGGCCCGAATTGTCA-ACAAAT-TTGTGGA-----CATTG-CT-TA--TACTT-AGG-ACAATGCCAC-CATGTAAA-TG-GTACAT--GTTTGGA-TGGGTGC-GATC-CGG-G--CT----ACCA----G---G-GATTAACT-TG-CAACAAAAGTAAGTCA--ACATCATGCACCATCGATA----GTTTA-ACCTTGAA-GAAAATGTAGCCTCCCACATT-CTCTGTT-CT--A-TATTTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGAttgaagaggaactttgtaaaactggtatgacctgacatgattaa
gi|4 : tcAACAGAATGTGACGGTCGAAAATATGGCCCGAATTGTCA-ACAAAT-TTGTGGA-----CATTG--T-TA--TACTT-AGG-ACAATG-CAC-CATGTAAAATG-GTACAT--GTTTGG--TGGGTGC-GATC-CGG-G--CT----ACCA----G---G-G-TTAACT-TG-CAACAAAAGTAAGTCA--ACATCATGCACCATCGATA----GTTTA-ACCTTGAA-GAAAATGTA-GC-TCCACATTCCTCTGTT-CT--AATATGTTTTACACGAAAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
gi|5 : ATAGAATGTGACGGGAGGAAATACGGATTTGGTTGTCT-TTATGA-CTGTGGATCCTGTATTG-AT-CA--CA------A-ACAATGTCAC-CATACCAA-CG-CATCTT--GCCTTCA-AGGATGT-GATG-CGG-G--AT----
gi|6 : catcttttgctgaaactataaaagatgtatcatttctataggaagtgtatactgacaaaaattttcatccaatatgtgttaaaggtatcgtgacgtttgttgaattttgatttAGACTGTGACAACAGAAAGTATGGCGAAGGTTGTCA-GTATGA-CTGTGGG-----AAATG-TA-GA--AACAT-GGC-ACAGTGTCAT-CATATAAA-CG-GGGCGT--GTCTGAA-TGGATGT-GAAC-CAG-G--AT----TCAA----GGAAG-GA-CAATG-TG-TA--GAACGTAAGTttgaaggggaactttgtaaaactggtatggcctggcatggttaaa
gi|7 : atatttcaataatacactgatatgcataatgaaactatttgctttaaatgttgttttggaAACAGAATGTGACGGTCGCAGATATGGCACGAGATGTGA-ACAAAG-TTGTGGA-----TACTG-TA-CG--GATTT-AGA-ACAATGTCAC-CACATAAA-TG-GGGCGT--GCTTGGA-AGGATGC-AATC-CGG-G--TT----ATCA----G---G-GATTGACA-TG-TAATGAAAGTAAATGA--GCTGCATACATGATTCATA----ATGTGTACCTTAAA-CA----GCA-CCTTTCGCATT-CTTTGTT-aatggtattccttctacatgtac
gi|8 : ttttgctttaaaATAACAGAGTGTGACAATCGACAATTTGGCAAAAATTGTCA-ACAGAG-TTGTGGA-----CACTG-CT-TA--TACTT-AGG-ACAATGTCAC-AATGAAAA-TG-GTACAT--GTTTGGA-TGGATGC-GATC-CGG-G--CT----ACCA----G---G-GTTTAACC-TG-TAACAAAAGTAAG
gi|9 : aatatcagaaataagacatcgtaataaaacgtcaatattgctttaAACAGCATGCGATGATAGAAAGCACGGCGAAGGTTGTCA-AGAGGA-TTGTGGA-----AATTG-TG-CA--GGTCT-GGC-AGAGTGTCAT-CACGTCAA-CG-GGACGT--GTCTGGA-TGGATGT-AAAC-CCG-G--ATTCAAACCA----G---G-----AACC-TG-TAAAGACCGTAAGTTATTATGTTAT
blockSeqs : A TGA C A AC TCCTGT CTA ACA TTTC C G A A . T A TG TT A . C G TCAA AGCTG GGTG TG T T TATT A C . GT G A AGC T C . AA T AA C C A . A
blockSeqs : C AGC C G C TCCTGT TCT G TTT . . A . . G C . C . . . C TCAA GGAA GATT A . G TA A C . A G A AG T . . A G A C C A . A
blockSeqs : G AAT . A C TC CC A CTT . . G . . A C . T . . . A . A GATT T . G TA T T . A C . AC . . .
blockSeqs : G TGC . T A GC TC G CTT . . T . . C G . T . . . A . A GTTT C . A CA G
blockSeqs : A TGC . A A G CC A CAT . . G . . A G . G . . . A . G TGT T . C CA
blockSeqs : C ATT . T C T AT C TTT . . T . . G G . T . . . A . A GTT T . C GA
blockSeqs : C CCC . A T T CT T CTT . . C . . A T . A . . . A . G GAC G . T
blockSeqs : A CCC . A T C AT T TCT . . A . . T A . T . . . C . G G A . C
blockSeqs : A ATT . T C C TA C TT . . A . . T A . T . . . C . G . C . A
blockSeqs : C CGA . T C A TA A CT . . C . . A T . A . . . A . G . C . .
blockSeqs : C CAC . A T T CT G C . . A . . G G . T . . . A . G
blockSeqs : A CAA . G T C TG T . . . A . . G G . A . . . T . G
blockSeqs : CGA . G T A T G . . . A . . T A . T . . . C .
blockSeqs : . . C . . G G . T . . . A .
blockSeqCons : A** G******* CA**
originalCons : NNATAACAGAATGTGACGGTNGAAAATACGGCGCGGGTTGTCA-ACANAG-CTGTGGA-----CATTG-CT-TA--NACTT-AGA-ACAATGTCAC-CACGTAAA-CG-GNACGT--GTTTGGA-TGGATGC-GATC-CGG-G--AT----ACCA----G---G-GATTAACC-TG-CAACGAAAGTAAGTTA--ACGTCATGCACCATCGATA----GTTTA-ACCTTGAA-NAAAATGTA-CCTTCCACATT-CTCTGTT-CT--AGTATNTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
finalCons : NNATAACAGAATGTGACGGTNGAAAATACGGCGCGGGTTGTCA-ACANAG-CTGTGGA-----CATTG-CT-TA--NACTT-AGA-ACAATGTCAC-CACGTAAA-CG-GNACGT--GTTTGGA-TGGATGC-GATC-CGG-GA--T----ACCAG-------G-GATTAACC-TG-CAACGAAAGTAAGTCA--ACGTCATGCACCATCGATA----GTTTA-ACCTTGAA-NAAAATGTA-CCTTCCACATT-CTCTGTT-CT--AGTATNTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAGGAACGTATGGCAAAGATTGTGGACATCGCTGCAGCATTCAATGCAGAAACATGACATGTGATCCAATCAACGGATTTTGTCTGGAAGGTTGTGCACCCGGGTATTTGGGAA
Unaligned ( gi|16 ): GTAACCATATAGACGGACGTTGTGAACTTGGATGTGATGATGGATTCCGAGGAAGTAAATGTGGGGAAAGTAAGTGTCCAGTTCTGCATG
Unaligned ( gi|19 ): TATAAGGTTTTAATAGGAGTGGGACCATCTTTTGCTGAAACTTAAAAGGATG
Alignments
lowQualScore : 222222 1111 11111 2222 11 11 111 1 1 2222 22 11
lowQualScore : 1 0 444 0 5 1 33 111111 8888 444 9999 2 2 1 2 2 1 2 33 0 33 2 2 0 2 333 1111 99999999 77777 66 3 6 9999 1 0 6 1111 0 77 11 3 333 3 0 0 1111 1 00 6 6 7 88 7
lowQualScore : . . ... . . . .. ...... .... ... .... . . . . . . . .. . .. . . . . ... .... ........ ..... .. . . .... . . . .... . .. .. . ... . . . .... . .. . . . .. .
lowQualScore : 0 3 000 1 7 0 33 111111 2222 999 0000 7 7 3 7 7 0 0 77 3 22 7 7 5 7 888 3333 88888888 33333 33 6 5 9999 4 2 5 2222 8 00 00 2 555 2 0 0 3333 0 77 7 7 3 33 3
consensus : NNATAACAGAATGTGACGGTNGAAAATACGGCGCGGGTTGTCA-ACANAG-CTGTGGA-----CATTG-CT-TA--NACTT-AGA-ACAATGTCAC-CACGTAAA-CG-GNACGT--GTTTGGA-TGGATGC-GATC-CGG-G--AT----ACCA----G---G-GATTAACC-TG-CAACGAAAGTAAGTTA--ACGTCATGCACCATCGATA----GTTTA-ACCTTGAA-NAAAATGTA-CCTTCCACATT-CTCTGTT-CT--AGTATNTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
Reference ( family-2297 ) : NNATAACAGAATGTGACGGTNGAAAATACGGCGCGGGTTGTCA-ACANAG-CTGTGGA-----CATTG-CT-TA--NACTT-AGA-ACAATGTCAC-CACGTAAA-CG-GNACGT--GTTTGGA-TGGATGC-GATC-CGG-G--AT----ACCA----G---G-GATTAACC-TG-CAACGAAAGTAAGTCA--ACGTCATGCACCATCGATA----GTTTA-ACCTTGAA-NAAAATGTA-CCTTCCACATT-CTCTGTT-CT--AGTATNTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
gi|1 : AACAGAATGTGACGATCGCAAATATGGCATGAGGTGCGA-GCAAAG-TTGTGGA-----CACTG-TT-TA--AATTT-AGA-ACAATGCCAC-CACATAAA-TGCGGACAT--GCTTGGA-AAGATGC-AATCTCAG-GTTAT----ATCA----GGA-G-GATTAACC-TG-TAAGAAAAGTGAGT------GTCATTCATCAT-GAAAAAATGTCT--ATCTTGAATCAAAATCT--TCTTTCACGTT-CTTTATTGCTTGAGTTTCTTGTGCATG--AATG-TTTATTATAAAGCTGGGA-AC--CATATCTTCATATTGACATTTT---ATAAAATCACAT
gi|10 : aaaacaatgtttaagcaaaatacctatattgttttcaaaAACAGAGTGTGACGGAAGAAAATACGGTGATGACTGT-A-GTAAGGACTGTGGA-----GCTTG-CC-TA--GA-TT-ATACCCAATGCCAC-CACATAAA-CG-GTACAT--GTCTTCC-CGGATGT-GATG-CTG-G--GT----ATAA----A---G-GAcat
gi|11 : atatttaaacctatcaagctatttcttaaacaatgatcATATGGAGCGGGT-GTAA-ACAGAG-CTGTGGAT----CGCTG-TC-TA--AATTTCGGA-ACAATGTCATGCACGTAAA-CG-GGATCTTGGCTTGGATTGGTTGTAAATC-CGGCG--CT----ATCA----A---GTG--TAATA-TGTCAATGACGGTAAATTA--Aga
gi|12 : CAGAATGTGATAATCGAACGTATGGAATGAATTGTTC-AGAAAA-CTGTGGA-----TTTTG-CTATG--GACT--AGA-GCAATGTCAC-CACGTGAA-CG-GAACCT--GTTTGAA-TGGGTGC-GATC-CTG-G--AT----ACAAAGCTG---G-G----GCT-TG-CAAGGACCGTAAGTTA--gataattgtatttttaaacagcat
gi|13 : aattcAGAATGTGACGGTGGGATGTACGGTGCGGATTG-CACACTTAG-ATGCGGT-----TCCTGTCT-TGACAAC----AA-ACAATGTCAC-CATGTTAA-CG-GCACGT--GTTCTAA-TGGCTGT-TCTT-CTG-G--AT----ACCA----G---G-t
gi|15 : tctTGTGGAG----CAT-G-CC-TA--AATTT-AGA-ACTGTGTCAC-CATGTGAA-TG-GAACGT--GTTTAAA-GGGGTGT-GATC-CGG-G--AT-----TCA----A---G-GGTGAATTGTG-CAAGGAAAGTA
gi|17 : tT-AGC-ACAGTGTCAC-CACATTAA-CG-GGACGT--GTTTAAA-TGGATGT-GAAC-CCG-G--ATTCAAACCA----G---G-----AACC-TG-CAAAGACAGTATGTt
gi|18 : cAGAATGTGACGGTGGGATGTACGGTGCGGGCTG-CACACAAAG-ATGTGGata
gi|2 : tATAGAATGTGACGGGAGGAAATATGGATTTAGCTGTCT-ATATGA-CTGTGGATCCTGTATTG-AT-CA--CA------A-ACAATGTCAC-CATATCAA-CG-GATCTT--GCCTTCA-AGGATGT-GATG-CGG-G--AT----tttctgtcttgaca
gi|3 : attaggttttaatggaatgagaccatcttttgctgaaacttaaaaggatgtatcttttctataggaagtgtatactgacaaaaaatgttcatccaatatgtcttaaaggtatcgtgacctttgttgaatttttatttATAACAGAATGTGACGGTCGAAAATATGGCCCGAATTGTCA-ACAAAT-TTGTGGA-----CATTG-CT-TA--TACTT-AGG-ACAATGCCAC-CATGTAAA-TG-GTACAT--GTTTGGA-TGGGTGC-GATC-CGG-G--CT----ACCA----G---G-GATTAACT-TG-CAACAAAAGTAAGTCA--ACATCATGCACCATCGATA----GTTTA-ACCTTGAA-GAAAATGTAGCCTCCCACATT-CTCTGTT-CT--A-TATTTTTTACACG-AAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGAttgaagaggaactttgtaaaactggtatgacctgacatgattaa
gi|4 : tcAACAGAATGTGACGGTCGAAAATATGGCCCGAATTGTCA-ACAAAT-TTGTGGA-----CATTG--T-TA--TACTT-AGG-ACAATG-CAC-CATGTAAAATG-GTACAT--GTTTGG--TGGGTGC-GATC-CGG-G--CT----ACCA----G---G-G-TTAACT-TG-CAACAAAAGTAAGTCA--ACATCATGCACCATCGATA----GTTTA-ACCTTGAA-GAAAATGTA-GC-TCCACATTCCTCTGTT-CT--AATATGTTTTACACGAAAATGCTTTATTATGAAGTTGGAACACAACGGATTTTC--ATTGTGATTTTATAATAAAATTACATGA
gi|5 : ATAGAATGTGACGGGAGGAAATACGGATTTGGTTGTCT-TTATGA-CTGTGGATCCTGTATTG-AT-CA--CA------A-ACAATGTCAC-CATACCAA-CG-CATCTT--GCCTTCA-AGGATGT-GATG-CGG-G--AT----
gi|6 : catcttttgctgaaactataaaagatgtatcatttctataggaagtgtatactgacaaaaattttcatccaatatgtgttaaaggtatcgtgacgtttgttgaattttgatttAGACTGTGACAACAGAAAGTATGGCGAAGGTTGTCA-GTATGA-CTGTGGG-----AAATG-TA-GA--AACAT-GGC-ACAGTGTCAT-CATATAAA-CG-GGGCGT--GTCTGAA-TGGATGT-GAAC-CAG-G--AT----TCAA----GGAAG-GA-CAATG-TG-TA--GAACGTAAGTttgaaggggaactttgtaaaactggtatggcctggcatggttaaa
gi|7 : atatttcaataatacactgatatgcataatgaaactatttgctttaaatgttgttttggaAACAGAATGTGACGGTCGCAGATATGGCACGAGATGTGA-ACAAAG-TTGTGGA-----TACTG-TA-CG--GATTT-AGA-ACAATGTCAC-CACATAAA-TG-GGGCGT--GCTTGGA-AGGATGC-AATC-CGG-G--TT----ATCA----G---G-GATTGACA-TG-TAATGAAAGTAAATGA--GCTGCATACATGATTCATA----ATGTGTACCTTAAA-CA----GCA-CCTTTCGCATT-CTTTGTT-aatggtattccttctacatgtac
gi|8 : ttttgctttaaaATAACAGAGTGTGACAATCGACAATTTGGCAAAAATTGTCA-ACAGAG-TTGTGGA-----CACTG-CT-TA--TACTT-AGG-ACAATGTCAC-AATGAAAA-TG-GTACAT--GTTTGGA-TGGATGC-GATC-CGG-G--CT----ACCA----G---G-GTTTAACC-TG-TAACAAAAGTAAG
gi|9 : aatatcagaaataagacatcgtaataaaacgtcaatattgctttaAACAGCATGCGATGATAGAAAGCACGGCGAAGGTTGTCA-AGAGGA-TTGTGGA-----AATTG-TG-CA--GGTCT-GGC-AGAGTGTCAT-CACGTCAA-CG-GGACGT--GTCTGGA-TGGATGT-AAAC-CCG-G--ATTCAAACCA----G---G-----AACC-TG-TAAAGACCGTAAGTTATTATGTTAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAGGAACGTATGGCAAAGATTGTGGACATCGCTGCAGCATTCAATGCAGAAACATGACATGTGATCCAATCAACGGATTTTGTCTGGAAGGTTGTGCACCCGGGTATTTGGGAA
Unaligned ( gi|16 ): GTAACCATATAGACGGACGTTGTGAACTTGGATGTGATGATGGATTCCGAGGAAGTAAATGTGGGGAAAGTAAGTGTCCAGTTCTGCATG
Unaligned ( gi|19 ): TATAAGGTTTTAATAGGAGTGGGACCATCTTTTGCTGAAACTTAAAAGGATG