lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555555555 11111 11111 11111 11 444444444444444444444444444444444 11111 2222 1 1111111 7777777777777777777777777777777777777777777777 11 111 1111111111 11 33333333 8888888888888 2 55555555 55555555555 11 11 33333333 2222 66666666666666666 2222222222 33333333333333333333333 111111111 22 1 11 66666666666666666666666666666666666666666666666666666666666 11 33
lowQualScore : 3 3 3 1111111111111111 55 3 3 3 44 22222 3 3 4 4 2 00000 55 8 3 66 11111 44 1 22 999999999999999999999999999999999 3 88 3 3 2 3 555 44 44 77777 99 3 3 2222 555 2 2 1 2 5 8888 8888888 2 33 555 5 2 1 2 2 66 2 2 3333333333333333333333333333333333333333333333 3 44 00 3 6 3 3 3 222 44 3 44 7 55 666 3333333333 3 99 3 3 33333333 7777 0000000000000 3 3 44 3 1 7 1 7777 3 44 3 3 3 888 88 44 88888888 3 6 9 3 3 2 55 3 22222222222 00 1 4 4 22 33333333 1111 00000000000000000 777 0 6666666666 666 55555555555555555555555 444444444 55 11 5 55 3 3 3 55 1 8 55 55 4 55 22 1 00000000000000000000000000000000000000000000000000000000000 2 7 4 66 22 0 66 5
lowQualScore : . . . ................ .. . . . .. ..... . . . . . ..... .. . . .. ..... .. . .. ................................. . .. . . . . ... .. .. ..... .. . . .... ... . . . . . .... ....... . .. ... . . . . . .. . . .............................................. . .. .. . . . . . ... .. . .. . .. ... .......... . .. . . ........ .... ............. . . .. . . . . .... . .. . . . ... .. .. ........ . . . . . . .. . ........... .. . . . .. ........ .... ................. ... . .......... ... ....................... ......... .. .. . .. . . . .. . . .. .. . .. .. . ........................................................... . . . .. .. . .. .
lowQualScore : 1 1 1 4444444444444444 11 3 3 3 66 77777 3 6 0 0 5 00000 55 6 3 66 77777 66 2 33 000000000000000000000000000000000 6 66 6 1 5 1 444 66 66 11111 11 6 1 9999 000 9 9 4 9 7 9999 0000000 9 66 000 4 7 0 7 7 33 9 9 1111111111111111111111111111111111111111111111 3 66 11 3 7 3 3 3 555 66 3 66 3 00 444 5555555555 6 44 3 1 00000000 1111 8888888888888 3 3 66 3 1 5 2 1111 3 66 3 1 1 555 55 22 66666666 3 6 2 1 1 3 00 6 22222222222 66 1 4 4 22 00000000 6666 99999999999999999 000 5 4444444444 444 00000000000000000000000 555555555 00 44 7 00 6 6 6 00 2 8 00 00 0 55 77 9 77777777777777777777777777777777777777777777777777777777777 1 3 8 11 77 8 99 0
consensus : CAGGGCT-CGACA-TTAACG-CTTGTCCGC---TTGT------CGGTACCAGCA-GAAACAATT-TAC-G-GACAA--GTT---A-AT-ATTG-C-C-AGTACT-----TG--TCCGACTGGACAAG-TGATAT-TTTTTAGGCATTA-----TGTAG--AAAAGATGT--CTCAAG-----A---------------AG----------TAT-ATAT--AA-AAAT-AAAACCAAGAAAGTA-TT---TTGTCGTTATC--GATG--ATTT-A--AT-CG-TATCTCAA-AGC-T-GGACAAAGGCTG---T-GCG-TCAAAACGA-GAT-C-G--CCG--AC---TAAA-T-CGGG---ATCGAAGTT-CATTAAAA-TT-G--TTCTACTT-T-CAATCTA--A--------G--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-TC-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA-------T-CTTG-TGAAGT-C-TTGTCCAC-C--TG-AA-GCGGATTGAGAA----ATC--ACCGCCG----A-G-C--GC-AGTAAAAC-TTTTTTCAG----TG-CTCA--T-GTCGTCAGT-G-TTTA---GAAGG--C--GCGAAA----AACC-TTTCCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCTT-ATT-TGA--TTTTAGGGGAG-AC-G--GAGA-N-AG--TGATTATAAATGA-T-T-----TTGTT---ACTGTA---AAAG-T------N-TTT---T---A----------T---T----TTTGTT---------TA--CTG-AAACAA--GGACAG-TTCTG-T-TTT--TAATTTTGGTA--CAGT--TA-CA--TTG-ATAAA-------AGTA-CAA-A-AA-C---ATA-GTA---N----T-ATT--------------ATTAANATGTTTATTTTA--ATTGTTTCTTTGGACAAGC-AA-AATTT
Reference ( gi|3 ) : CAGGGCT-CGACA-TTAACG-CTTGTCCGC---TTGT-----CCGGTACCAGCA-AAAACAATT-TAC-G-GACAA--GTT---A-AT-ATTG-C-C-AGTACT-----TG--TCCGACTGGATAAG-TGATAT-TTTTTAGGCATTA-----TGTAG--AAAAGATGT--CTCAAG-----A---------------AT----------TAT-ATAT--AA-AAAT-AAAACCAAGAAAATA-TT---TTGTCGTTATC--GATG--ATTC-A--AT-TG-TATCTCAA-AG--T-GGACAAAGGCTG---T-GCG-TCAAAAGGA-GAT-C-G--CCG--TC---TAAA-T-CGGG---ATCAAAGTT-CATTAAAA-TT-G--TTCTACTT-T-CAATCTA--A--------G--GA---------T--------------------T-TTC--GTTC-C-GGGCAACA-TC-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA-------T-TTTG-TGAAGG-C-TTGTCCAC-C--AG-AC-GCGGATTGAGAA----ATC--AT---------A-G-C--GC-AGTAAAACGTTTTTTCAG----TG-CTCA--T-GTCGTCAGT-G-TTTA---GAAGG--C--GCGAAAAT--AACC-TTTCCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAAGCCTTAATTATGA--TTTTAGGGGAG-AC-G--GAGA-A-AG-TTGATTATAAATAA---------TTG-----ACTGTA---AAAG-T------G-TTT---T---A----------T---T----TTTGTT---------TA--CTG-AAACAA--GGACAG-TTCTG-T-TTT--TAATTTTGGTA--CAGT--TA-CA--TTG-ATAAA-------AG----------------ATA-GTA---G----T-ATT--------------ATTAAAATGTTTATTTTA--ATGTTTTCTTTGGACAAG--AA-AATTT
gi|30 : CAGGGCT-CGACA-TTAACG-CTTGTCCGC---TT
gi|28 : agCAGGGCT-CAACA-TTAACG-TTTGTCCGA---TTGT-----C
gi|4 : taAGGGCT-CGACA-TTAACG-CTTGTCCGC---TTGT-----CCGGTACCAGCA-GAAACAATT-TAC-G-GACAA--GTT---A-AT-ATTG-C-C-AGTA-T-----TG--TCTGACTGGACAAG-TGATAT-TTTTTAGGCATTA-----TGTAG--AAA-GATGT--CTCAAG-----A---------------AG----------TAT-ATATT-AA-AAAT-AAAACCAAGAAAATA-TT---T-GTCATTATC--GATG--ATTT-AT-AT-CG-TATCTCAA-AG--TTGGACAAAGGCTG---T-GCG-TCAAAAGGA-GAA-C-G--CCG--TC---TAAA-T-CGGG---ATCTAAGTT-CATTAAAA-TT-G--TTCTACTT-T-CAATCTA--A--------G--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-TC-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA-------T-CTTG-TGAAGT-C-TTGTCCAC-C------------------AA----ATT--AT---------A-T-C--GC-AGTAAACCGTTTTTTCAG----TG-CGGA--T-TTCGTCAGT-G-TTTA---TAAGG--C--GCGAAA-------C-CTTGCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAACCCTTAATTATGA--TTTTATGGGAG-GT-G--GAGA-A-AG--TGATTAAAAATGATTGT-----TTG-----ACTGTA---TAGGTT------GTTTT---T---A----------T---T----TTTGTT---------TA--CTG--AACAA--GGACAG-TTCGG-T-TTT--TAA-TTTGGTA--CAGT--TA-TA--TTG-ATA-----------------------------A-GCA---T----T-ATT--------------ATTAAAATGTTTATTTTA--TTTGTTTCTTTGGCCAAG--CA-AA
gi|11 : AGGGCT-CGACA-TTAACG-CTTGTCTG----------------GTACCAGCA-GAAACAATT-TACTG-GACAA--G-T---G-AT-ATT
gi|17 : AGGGCT-CGACA-TTAACG-CTTGTCCAC---TT-------------TCAGCA-GAAACAATT-TAC-G-GACAA--GTTCATACAT-ATTGGC-C-AGTACT-----TG--TCCGACTGGACAAG-TGATA--TTTTTAGGC-TTAG----TTTAG--AAAAGATGTC-CTCAAG-----A---------------AG----------TAT-ATAT---A-AAAT-AAAACCAAGAAAGTATTT---TTGTCGTTATC--G-TG--ATTttttaggattaacgcttgtctgatgtctcaagaagtatatataaaaataaaaccaagaaagtattttgttgttatcgatgatttaattgtatctcaaagttggacaaaggctgtgcgtcaaaacgagatcgccgactaaatcgggatcgaagttcattagaattgttctactttcaatctaaggaaatatggattattcgtttcgggctacatcaccttgtcctacactttttggcgccactacagttgcatcttgtgaagtcttttccacatgaagcgtattgagaaatcaccgccgagcgcaggaaaacttttttgcagtgctcatgtcaatgtttagagtgcgcgaaacctttcctcgatagacatctcg
gi|29 : AGGGCT-CAACA-TTAACG-TTTGTCCGA---TTGT-----ttaatc
gi|5 : tatGGGCT-CGACA-TTAACG-CTTGTCCGT---T-------------ACCAGCA-GAAACAATT-TAC-G-GACAA--GTT---A-AT-ATTG-C-C-AGTACT-----TG--TCCGACTGGACAAG-TGATAT-TTTTTAGGCATTA-----TGTAG--AAAAGATGT--CTCAAG-----AAGTATATATAAAAATATAACCAAGGTATAT-ATAT--AA-AAAT-ATAACCAAGAAAGTA-TT---TTGTCGTTATC--GATA--ATTT-A--AT-CG-TATCTCGA-AGT-T-GTACAAAGTCTG---T-GCG-TCAAAACGA-GAT-C----------CAA-TAAA-T-CGGG---ATCGAAGTT-CATT-AAA-TT-G--TTCTACTT-T-CAATCTA--A--------G--GA---------A--------------------T-T---------C-GGGCAACA-TC-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTT---------------------------C-TTATCCAC-C--TG-AA-GTGGATTGAGAA----ATC--ACCGCG-----A-G-C--GC-AGTAAAAC----TTTCTG----TG-CTTT--T-GTTGTCAG--G-TTTA---GAAGG--C--GCGAAA
gi|2 : GGGCT--GACA-TTAATG-CTTGTCCGC---T-GT-----ACAGTACCAGCA-AAAACAATTCTAC-G-GACAG----T---G-AT-ATTT-T-T-AG---T-----TGCATTAGG-TAGAAAAGATGATA-----TAAGACGCTA-----TATAT--AAAATACACA-CCCAAG-----A---------------A----------------------------------------AGTA-TT---TTGTTGTT-TCTGGATG--ATTT-A--AT-CG-TATCTCAA-AGC-T-GGACAAATGTTG---TGGCG-TCAAAACAA-GATGCAA--CCGGATT---AAAA-T-CGGG---AT-GAAGTT-CACTAAAATTT-GGTTTTTACTT-TCCAATCTAT-A--------T--GC---------T--------------------T-TTC--GTTT-TGGGGCAACA-TC-GCC-TTGTTCCTA--A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA-------G-TCTT-TGAAGT-C-TTGTCCAC-CT-AGAAG-GCGGAATGAGAA----ATC--ACTGGCCG---A-G-C--GCTGGTAAAAC-TTTTTTCAGTGCATG-CTCA--CGGTCGTCAGTGG-TTTA---GAAGG--C--GTGAA-----AACC-TTTCC--TGAT-AGA-CATCTCAA--C-TTGCTTGAATTCA--CCTT--T--TGAT-TTTTAGTGGAGAAC-G--GACACACAG--TGATAATAATTGT---------TTG-----ACTGT----AAAG-T------T-TTT---T---T----------TTTAT----TTTGTT---------T---CTG--AACAA--GG-CAG-TTCTG-T-TTT--TAATTT--GTA--CAGT--TAGCA--TT--ATAAA-------AGTAATCAACACAATTTCATA-G-----G----T-ATTAAGATAAATTACTCATTAATATGTT--TTTTAAGATGTTTCTTTTGGACAAGC-AACAATTccttaacagcgatttgaggggagacagaaacagtgattaaataattgtttgacagtaaaagtttttttttgttttttgtttactgaacaaggacagttctgttttttaatttaatagttacattaataaaagtatcaaaacaatcatagtattattattaaaatgttattttaattgtttctttggacaagcaaaattt
gi|12 : GGGCT-CGACA-TTAATG-CTTGTC--------G-------CGGTACCAGCA-AAAACAATT-TAC-G-GACAA--GTT---A-AT-ATTT-C-C-AGTACT-----TG--TCCGACTGGACAAG-TGATAT-TTTTTAGGCATTA-----TGTAG--AAAAGATGT--CTCGAGACATAA---------------AT----------TAT-ATAT--AA-AAAT-AAAACCAAGAAAGTA-TT---TTGTCGTTATC--GATG--ATTT-AATAT-CG-TATCTCAA-AGC-T-GGACAAATGTTG---T-GGC-TCAAAACGA-GAT-C-A--CCG--AC---TAAA-T--GGA---ATCGAAGTT-CACTAAAA-TT-G--TTTTACTT-T-CAATCTAATA--------T--GACT-------T--------------------T-TCC--GTTT-C-GGGCAACA-TCGGCC-TTG-TCCT---A--C-A--CTTTTTa
gi|13 : GGGCTGCGACA-TTAACG-CTTGTCCG----------------GTACCAGCA-GAAACAATT-TAC-G-GACAA--GTT---T-AT-ATTG-C-C-CGTACTTTACTTG--TCCGACTGGAGAAG-TGATAT-TTTTTAGGCATTA-----TGTAG--AAAAGATGT--CTCTAG-----A---------------AG----------TAT-ATAT--AA-ATAT-AAAACCAAGAAAGTA-TT---TTGTCGTTGTC--GATG--ATTT-T--AT-CG-TATATCAA-AGT-T-GGACAAAGGTTT---T-GCG-TCAAAACGA-GAT-C-G--CCG--AC---TAAA-T-CCGG---ATCGATGTT-CATTAAAA-CT-G--
gi|18 : GGCT-CGACA-TTAACGGCTTG-CCAC---TT-------------TCAGCAGAAAACAATT-TAC-GCGACAA--GTT---C-AT-ATTG-C-C-AGTACT-----TG--T-CGACT-GACAAG-TGATA--TTTTTAGG-ATTA-----TTTAT--AAAAGA-GTCGCTCAAGGA---G---------------AG----------TAT-ATA---AA-AAAT-AGAAACAAGAAAGTA-TT---
gi|1 : GCT-CGACAATTAACG-CTTATCCG-----TA-----------ACCAGCA-GAAACAATT-TAC-G-GACAC--GTTAAGA-AT-AGTG-C-CTAGTACT-----T---TCCAAC-GGACAAG-TGCTAT-TTTAT-GGCATTA-----TGTAGAAAAAAGATGT--CTCATT-----A---------------AG----------TAC-ATTT--AAGAAATAAAAACCAAG-AAGTA-TT---TTGTCGTTATC--GATG--ATT--A--ATCCGTTATCTCAACAGTTT-GGACTAAGGATGGCTC-GCG-TCAAAATGA-GATCC-GC-CCG--GCACTTAAA-T-CGGG---ATCAAAGTT-CATTTAAA-TT-GT-TTCTACTTAT-CAATC-A--A--------G--GAAATGTGGCTT--------------------T-TTC--GTTT-C-GGGCAACATTC-GCC-TTG-TCCT---A--C-A--CTTTTTGGCTGC--CACTATAGTTG---CA-------T-CTTG-TGAAGT-CTTTGTCCAC-C--TG-AA-GCGGATTGAGAA----A----ATCCCCGCCCGA-GCC--GC-AGTAAAAC-TTTTTTC------TG-CTCA--T-GTCGTCAGT-G-TTTG---GAAGG--CCGGTGA------AACC-TTTACCCCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCCTGATTTTGA--TTTTAGGGGA--AC-G--GAGA-C-AG--TGAT--TAAATGATTTTTTG--TTG-----ACTGTG---AAAA--------G-TTT---T--------------T---T----TTTGTTAAATTGGTCTA--CTGAAAACAA---GACAG-TTATG---TTT--TAATTT--GTA--CAGT--TA-CA--TTA-ATAAA-------A-----------------ATA-g
gi|4 : -CAATA-TTAAC---TTGTCCGTAAATTGTTTCTGCTGGTACCGG------ACAA----GC-G-GACAAGCGTT---A-AT-GTCG-tcaacactcacaatcatagttaattgtgttgttagctctattgcaatggctgctt
gi|6 : agggctCCGC---TTGT-----CCGGTACCAGCA-GAAACAATT-TAC-G-GACA---GTT---A-AT-ATGG-C-C-AGTA-T-----TG--TCTGACTGGACAAG-TGA-ATATTTTTAGGCATT------TGTAG--AAA-GATGT--CTCAAG-----A---------------AG----------TAT-ATATTAAA-AAAT-AAAACCAAGAAAATA-TTGTTTTGTCATTTAC--GATG--ATTT-A--AT-CG-TATCTCAA-GT--T-GGACAAAGGCTG---T-GCG-TCAAAAGGA-GAA-C-G--CCG--TC---TAAA-T-CGGG---ATCTAAG-T-CATTAAAA-TT-G--TTCTACTT-T-CAATCTA--A--------G--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-TC-GCC-TTG-TCCTA--A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA-------T-CTTG-TGAAGT-C-TTGTCCAC-C-------------------A----ATC--AG---------AGG-C--G--AGTAAACCTTTTTTTCAG----TG-CTTA--T-GTCGTCAGT-G-TTTA---GAAGG--C--GCG-------AACC-TTT-CCTCGAT-AGA-CATCTCG---CTTTGCTTG-ATTCAA-CCTT-ATTATGA--TTTTAGGGGAG-ATGG--GAGA-A-AG--TGATTA-AAATAATTGT-----TTG-----ACTGTATATAAGT-T------GTTTT---T---A----------T---TC---TTTGTT---------TA--CTG--AACAA--GGACAG-TTCTG-T-TTT--TTAATTTGGTA--CAGTAGTT-CA--TTG-ATA-----------------------------A-GCA---T----T-ATT--------------ATT-AAATGTTTATTTTA--ATTGTTTCTTTGGACAAGC-AA-AATTccagtattgtctgactggacaagtgatattttttaggcattatgtagaaagatgtctcaagaagtatatattaaaaataaaaccaagaaaatatttgtcattatcgatgatttatatcgtatctcaaagttggacaaaggctgtgcgtcaaaaggagaacgccgtctaaatcgggatctaagttcattaaaattgttctactttcaatctaaggattttcgtttcgggcaacatcgccttgtcctacactttttggcgccactacagttgcatcttgtgaagtcttgtccaccaaattatatcgcagtaaaccgttttttcagtgcggatttcgtcagtgtttataaggcgcgaaaccttgcctcgatagacatctcgactttgcttgattcaacccttaattatgattttatgggaggtggagaaagtgattaaaaatgattgtttgactgtataggttgtttttatttttgtttactgaacaaggacagttcggtttttaatttggtacagttatattgataagcattattattaaaatgtttattttatttgtttctttggccaagcaaa
gi|16 : A-AAAATA-TT-CAC-A--ACAA--GAA---A-ATTATTG-CAT-AGTACT-----TT--TCCGACTGGAAAAA-TGAT-T-TTGTCA--CATT------TCAAA--AAAAGAgt
gi|11 : ACTGGACAAG-TGATAT-TTTTTAGG-ATTAACGCTTGTCT------GATGT--CTCAAG-----A---------------AG----------TAT-ATAT--AA-AAAT-AAAACCAAGAAAGTA-TT---TTGTTGTTATC--GATG--ATTT-A--AT-TG-TATCTCAA-AG--TTGGACAAAGGCTG---T-GCG-TCAAAACGA-GAT-C-G--CCG--AC---TAAA-T-CGGG---ATCGAAGTT-CATTAGAA-TT-G--TTCTACTT-T-CAATCTA--AGGAAATATG--GA---------T--------------------TATTC--GTTT-C-GGGCTACA-TC-ACC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA-------T-CTTG-TGAAGT-C-TTTTCCAC-A--TG-AA-GCGTATTGAGAA----ATC--ACCGCCG----A-G-C--GC-AGGAAAACTTTTTTGCAG----TG-CTCA--T----GTCAAT-G-TTTA---GAGTG--C--GCGA------AACC-TTT-CCTCGAT-AGA-CATCTCGatactttgttattatctatataattttatgaaatctcaaagttgagactgtgcagatgagcgcgattaaatcgggatcgaaattcattttaagtgttctatttcgatct
gi|21 : agggctcgacattaacgcttgtctggtaccagcagaaacaatttGGACAAG-TGATAT-TTTTTAGGCATTA-----TATAG--AATAGATGT--TTCAAG-----A---------------AG----------TATAATAT--AA-AAAT-AAAACCAAGAAA
gi|7 : AT-AAAACCAAGAAAGTA-TT---TTGTCGTTATC--GATG--ATTTTA--AT-CG-TATCTCAA-AGC-T-GGACAAATGTTG---T-GCA-TCAAAACGA-GAT-C-A--CCG--AC---TAAA-T--GGA---ATCGAAGTT-CACTAAAA-TT-G--TTTTACTT-T-CAATCTA--A--------TATGACT-------T--------------------T-TTC--GTTT-C-GG-CAACA-TC-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA-------T-CTTG-CGAAGT-C-TTGTCCAC-C--TG-AA-GCGGATTGAGAA----ATC--ACCGCCA----A-G-C--GC-TGTTAAAC-TTTTTTCAG----TG-CTCA--T-GTCATCAGT-G-TTTA---GAAGG--C--GCGAAA------CC-TTTCC-TCGAT-AGA-CATCTCAA--CTTTGCTTG-ATTCAACCCTTA----TGA--TTTTAGTGGAG-AC-A--G----------TGATTA--AATAA---------TTGTTG--ACTGTT---TAAG-T------T-TTT---TTTTA----------T---T----TTTGTT---------TA--CTG-AA-CAA--GGACAG-TTCTG-T-TTT--TAATTT-GGTA--CAGT--TA-CA--TTA-TTAAA-------AGTATCAACACAAAC---ATA-GTATTAG----TTATC--------------ATTAATATGTT-ATTTTA--ATTGCTTCTTTGGACAAGC-AA-AATTTg
gi|14 : T-AAAACCAAGAAAGTA-TT---TTGTCGTTATC--GATG--ATTT-A--AT-CG-TATCTCAA-AGC-T-GGACAAATGTTG---T-GCA-TCAAAACGA-GAT-C-A--CCG--AC---TAAA-T--GGA---ATCGAAGTT-CACTAAAA-TT-G--TTTTACTT-T-CAATCTAATA--------T--GACT-------T--------------------T-TTC--GTTT-C-GGGCAACA-TC-GCC-TTG-TCCT---A--CAA--CTTTTTGGC-GC--CACTACAGTTG---CA-------T-CTTG-CGAAGT-C-TTGTCCAC-g
gi|16 : AAAAGAATA-CT---TTGTTATTATC--TATATAATTT-T--AT-GA-AATCTCAA-AG--T-TGA----GACTG---T-GC-----AGATGA-G---C-G--CGA--T----TAAA-T-CGGG---ATCGAAATT-CATTTTAA-GT-G--TTCTA-TT-T-CGATCT
gi|9 : aaaaatattcacaacaagaaaattattgcatagtacttttccgactggaaaaatgattttgtcacatttcaaaTCGA-AG--TTGGACAAAGGCTG---T-GTGGTCAAAACGA-GAT-C-GGGCCG--AC---TAAA-TGCGGGGAGATCGAAGTTGCATTAAAA-TT-G--TTCTATCT-T-CA-TCTA--A--------G--GAAATATGGCTT--------------------T-TTC--GTTTGC-GGGCAACA-TC-GC--TTG-TCCT---AAAC-A--CTTTTTGGC-GCGACACAACAGTTGGGGCA-------T-CTTG-TTAAGTTC-TTATCCAC-C--TG-AA-GCGGATTGAGAA----ATC--CCCGCCG----A-G-T--GC-AGTAAA-CTTTTTTTCAG----TG-CTCAAGT-GTTGTCCAT-G-TTTAA--GAAAGAAC--GC----ATTAAACC-TTTCC-TCGAT-AGA-CA---------TTTG----------------------GA--TTTTAGGGGAG-AC-GTGGAGA-C-AG-T-GATTA--AATAA---------TTGTTGG-ACTGTA---AATT-TTTTTTGG-TTT---T---T----------T---T----TTGGTT---------TAAGCTG-AAGCAA--GGACA--TTCTG-T-TTT--TA-TTTTGGTGAGCAGT--TG-CA--TTA-ATAAAGTATCAAAA----------------ATC-ATA---GCTATT-ATC--------------ATTAACATGTTAATTTTA--TTGGTTTCTTTGGCAAAGCAAA-AATTT
gi|10 : CGA-AG--T-GGACAAAGGCT----T-GTG-TCAAAACGC-GAT-C-G--CCG--AC---TAAACT-CG-----ATCGA-GTT-CAATAAAA-TTTG--TTCTACTT-C-TAA-CTA--A--------G--AAACTATG---T--------------------T-TTC--GTTT-C-GG-CAAC--TC-GCCGTTG-TCCT---A--C-A--CTTTTTGGC-GC--CACAACAGTTC---AA-------TCTTTG-TTAAGGTC-TTATCCACGCTGAG-A--GCGGATTGAGAA----ATCCGCG---------A-G-T--GC-AGTAAAAC--TTTTTCAG----TGCCTCA--T-GTTGTCATT-GTTTTA---GAAGA--C--GCAAAA-------C-TTTCCCTCGAT-AGA-CA--------------TTG-ATT---------------------TAG-GGAG-AC-G--GAGG-ACAG--TGAT--TAAATAT---------TTGTTGGAACTGTA---AA---T------T-TTT---T---GGTTT------T---T----TTTGGT---------TA--CTG--AACAA--GGACAGTTTCTG-T-TTTTCTAA--TTGGTA--CAGT--TG-CA--TT--ATAAA-------AGTATCAAAAAAATC---ATAGGTA--------T-ATC--------------ATTAACATG--TATTTAA--TTGTTT--CTTGGAAAAGC-AA-AATT
gi|23 : cAGAGGTTG---T-GTG-T-------ATGAT-C-A--CTG--AT---TAAA-T-CGGA---ATCAAAATT-CATT-ATG-TC-A--TTCTACTT-T-CA
gi|8 : AAGTT-CATTAAAA-TT-G--TTTTTCTT-T-CAATCTA--A--------G--GA---------TATGGCCCTTTCTCTTCTCTTT-TTCTGGTTT-C-GGGCAACAATC-GC--TTG-TCCCCTAA--C-AACTTTTTTGGCTGC--CAGT----TTG---CAATCCTCTT-TTTGGTGAAGT-T-TTGTCCAC-C--TG-AAAGCGGATTGAGAACTCTACC--GTCG-------A-G-CTTGC-ACTAA--CTTTTTTTCAG----TG-CTCT--G-GTCGTCAGT-G-TTTATTCGAGGGTCC--GTGA------AACCGCTTTCCTCGATAAGA-CA-CTCGACTCTTTGCTTG-ATCCA--CCC---TTATGATTTTTTA-GGGAG-AC-GCCGAGC-C-AGCCTGATTTTTAATGAGTTTTTTTGTTG-----ACTGTA---AAAGTT------G-TTTTTCT---ATCTTTATTTTT---T----TTTGTT---------TA--CTG--AACAG--GGACAG-TTCTT-TATTT--TAATTTTGGTA--C-GT--TA-CAACATGTATAAAG------AGTACAAACACATC----ATA--TA---G----T-ATTAATTG---------ATTTAAATG-TTATTCTT--ATATTTGCTTT
gi|19 : -C-TTGTCCAC-C--AG-AA-GCGGATTGAGAA----ATT--ACAGCCG----A-G-C--GC-AGTAAAAC-TTT-------------------T-ATCGTCAGT-G-TTTA---GAACA--C--GCGA------AACC-TTT-CCTCGAT-AGA-CATCTCGttcttgcgacaagcatcaat
gi|26 : tCAC-C--AG-AA-GCGGATTGAGAA----ATC--ACAGTCG----A-G-C--GC-AGTAAAAC-TTT-------------------T-GTCGTCAGT-G-T
gi|20 : T-G-TTTA---GAGGG--C--GCGAAA------CC-TTTCC-TCGAC-AGA-CATCTTGA--CTCTGCTTG-
gi|15 : TTA---GAGGG--C--GCGAAA------CC-TGTCG-TCGAT-AGAACATCTTGA--CTTTGCTTG-Aggggaaaggaagaatgaagcaacaaacagtagttcagaaacttttgaaa
gi|27 : TCCCTCGGT-AGG-CATCTTGA--TTTTGCTTG-Aaggagaggaagattgaagcaacaagcagtggttcagacaattttaaaaactgaaccgtattcactaaattcgctcatgtttccgtcgtttaaacgcagctgtgtacttaaatgtaggtcttaggtaatgatgtggattacgcgaattc
gi|5 : aaaccaAAACCTTAACAGCGA--TTTGAGGGGAG-AC-A--GAAA-C-AG-T-GATTA--AATAA---------TTGTTTG-ACAGTA---AAAG-T------T-TTT---T---T----------T---TGTTTTTTGTT---------TA--CTG-AA-CAA--GGACAG-TTCTGTT-TTT--TAATTT---AA--TAGT--TA-CA--TTA-ATAAA-------AGTATCAAAACAATC---ATA-GTA---T----T-ATT--------------ATTAAAATG-TTATTTTA--ATTGTTTCTTTGGACAAGC-AA-AATTTggacaaggaagaattaa
gi|24 : gggctcgacattaacgcttgtccgttaccagcagaaacaatttacggacaagttaatattgccagtacttgtccgactggacaagtgatattttttaggcattatgtagaaaagatgtctcaagaagtatatataaaaatataaccaaggtatatatataaaaatataaccaagaaagtattttgtcgttatcgataatttaatcgtatctcgaagttgtacaaagtctgtgcgtcaaaacgagatccaataaatcgggatcgaagttcattaaattgttctactttcaatctaaggaattcgggcaacatcgccttgtcctacactttttggcgccactacagttcttatccacctgaagtggattgagaaatcaccgcgagcgcagtaaaactttctgtgcttttgttgtcaggtttagaaggcgcgA---AAAG-T------T-TTT---T---A----------T---T----TTTGCT---------TA--CTG--AACAACTGGGCAG-TTCTG-T-TTT--TAA-TTTGGTA--CAGT--T
gi|25 : AAG-T--------TTT---T---A----------C---T----TTTGTT---------TA--CTG-AA-CAT--GGACTG-TTCTG-T-TTT--TAA-TTTGATA--CAGT--TA-TA--
gi|22 : TA---T----T-ATT--------------ATTAAAATGTTTATTTTG--ATTGTTTCTTTGGACAAGC-AA-AATTT
Alignments
lowQualScore : 333333333 111111 1111111111 222222222222222 11111 11 777777777777777777777777777777 111 1111 222222222 1 4444444444 11111 111 333333333333333 11111111 33333333333333333333333 11 11 777777777777777777777777777777 2222222222222222222
lowQualScore : 3 3 3 666666666 3 3 3 3 66666 555 3 3 3 3 1 99999 3 0 1 111111 3333333333 44 77 000000000000000 22222 3 3 3 44 3 3 2 2 555 44 44 3 3 77 3 3 2 6 2 444 2 2 2 6666 5 444 2 2 2 444 2 0 2 2 33 2 2 2 11 44 777777777777777777777777777777 3 44 3 3 3 3 3 3 3 111 44 3 44 6 44 555 0000 3 7777 3 3 3 2 77 3 6 3 3 9999 3 77 6 9 3 3 0 6666 3 44 3 2 2 2 555 555555555 2 2 0 2 2 1 44 3 88 3333333333 99 4 11111 55 4 2 99 999 888888888888888 555 3 77777777 44444444444444444444444 88888 44 88 4 44 3 3 44 3 9 5 44 44 3 55 00 0 4 0 666666666666666666666666666666 8 7 2222222222222222222 3 4 55 2 3 666 3 4 4
lowQualScore : . . . ......... . . . . ..... ... . . . . . ..... . . . ...... .......... .. .. ............... ..... . . . .. . . . . ... .. .. . . .. . . . . . ... . . . .... . ... . . . ... . . . . .. . . . .. .. .............................. . .. . . . . . . . ... .. . .. . .. ... .... . .... . . . . .. . . . . .... . .. . . . . . .... . .. . . . . ... ......... . . . . . . .. . .. .......... .. . ..... .. . . .. ... ............... ... . ........ ....................... ..... .. .. . .. . . .. . . . .. .. . .. .. . . . .............................. . . ................... . . .. . . ... . . .
lowQualScore : 1 1 1 555555555 6 3 3 3 88888 888 3 6 6 6 4 11111 1 4 5 222222 5555555555 22 99 888888888888888 99999 3 3 3 66 3 1 7 9 000 22 22 1 1 33 1 3 9 3 9 777 7 7 7 0000 3 777 7 7 7 777 5 4 5 5 44 7 7 7 55 22 111111111111111111111111111111 1 22 1 1 1 1 1 1 1 555 22 1 22 7 66 888 4444 3 1111 3 1 1 9 66 1 2 1 1 5555 1 33 2 2 1 1 3 5555 1 22 1 9 9 9 000 222222222 7 6 7 9 9 5 66 3 77 2222222222 55 0 66666 55 0 4 55 888 555555555555555 111 3 33333333 11111111111111111111111 33333 66 88 5 66 3 3 66 3 5 4 66 66 6 00 44 8 0 7 888888888888888888888888888888 0 3 9999999999999999999 6 5 00 3 6 444 6 0 4
consensus : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGT-C-GGTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGTT-GGACAAAGGCTG---T-GCG-TCAAAACGAGAT-C-G--CC-GAC---T-AAA-T-CGGG---ATCGAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGTAAAAC-TTTT-TT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGGCGCG--A--A--AACC-TTTCCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCTT--A--TTA-TGA--TTTTAGGGGAG-AC--G--G--A-GACAG--TGATTATAAATAA----TTTTGTTG--ACTGT-A-A-AAG----T--TTTTT-A----------T---T------TTT-----GTTTA--CTG-AAACAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AGTAT-CAA-------A-AA---C-----A----TA-G-TA----TT-A-----------TT-ATTAANATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
Reference ( family-2238 ) : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGT-C-GGTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGCT-GGACAAAGGCTG---T-GCG-TCAAAACGAGAT-C-G--CC-GAC---T-AAA-T-CGGG---ATCGAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGTAAAAC-TTTT-TT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGGCGCGA-A--A--AACC-TTTCCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCTT--A--TT--TGA--TTTTAGGGGAG-AC--G--G--A-GANAG--TGATTATAAATGA----TTTTGTT---ACTGT-A-A-AAG----T--NTTTT-A----------T---T------TTT-----GTTTA--CTG-AAACAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AGTA--CAA-------A-AA---C-----A----TA-G-TA----NT-A-----------TT-ATTAANATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
gi|1 : GCT-CGACAATTAACG-CTTATCCG--TA-------ACCAGCAGAAA-CAATT-TAC-G-GACACGTT---A-AGAAT-AGTG-C-CTAGTACT-----T-TCCAAC-GGACAAGTGC-TATTTTAT-GGCATTA-----TGTAGAA----------AAAAGATGT--CT---------------CATT-----AAG-TAC-ATT-T--AAGAA-ATAAAAACCAAGAA-GTA-TT---TTGTCGTTATC--GATG--A-TT--A--ATCCGTTATCTCAACAGTTTGGACTAAGGATGGCTC-GCG-TCAAAATGAGAT-CCG--CCCGGCACTT-AAA-T-CGGG---ATCAAAGTT-CATTTAAA-TT-G--TTTCTACTTAT-CAATC-A--AG--GAAATGTGGCTT--------------------T-TTC--GTTT-C-GGGCAACA-TTC-GCC-TTG-TCCT---A--C-A--CTTTTTGGCTGC--CACTATAGTTG---CA----TC-TT----GTGAA-GT-CTTTGTCCAC-CT-GA-A-GCGGATTGAGAAAATC-CCC-GCCCGAGCC-GC-AGTAAAAC-TTTT-TT-C------TG-CTCA--T-GTCGTCAGT-G-TTT-G---GAAGGC-CGGTG--A--AACC-TTTACCCCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCCT--GATTT--TGA--TTTTAGGGGA--AC--G--G--A-GACAG--TGAT--TAAATGATT--TTTTGTTG--ACTGTGA-A-AAG----T--TTTTT-T----------T---TGTTAAATTG-----GTCTA--CTGAAAACAA---GACAG-TTATG--TTT--T-AATTT--GT--ACAGT--TA-CA--TTA-ATAAA-AATAT-CAACACTCACA-AT---C-----A----TA-GTTAATT-GT-G-----------TT-GTTAGC---T--CTATTGCAAT-GG---CTGC-TT
gi|10 : CGA-AG-T-GGACAAAGGCT----T-GTG-TCAAAACGCGAT-C-G--CC-GAC---T-AAACT-CG-----ATCGA-GTT-CAATAAAA-TTTG--TT-CTACTT-C-TAA-CTA--AG--AAACTATG---T--------------------T-TTC--GTTT-C-GG-CAAC--T-C-GCCGTTG-TCCT---A--C-A--CTTTTTGGC-GC--CACAACAGTTC---AA----TCTTT----GTTAAGGT-CTT-ATCCACGCT-GAGA-GCGGATTGAGAAA-T---CC-G-C-GAGT--GC-AGTAAAAC--TTT-TT-CAG----TGCCTCA--T-GTTGTCATT-GTTTT-A---GAAGACGCAA-A--A-----C-TTTCCCTCGAT-AGA-CA--------------TTG-ATTTA--------------------------GGGAG-AC--G--G--AGGACAG--TGAT--TAAATA------TTTGTTGGAACTGT-A-A-A------T--TTTTT-GGTTT------T---T------TTT-----GGTTA--CTG--AACAA--GGACAGTTTCTGT-TTTTCT-AA--TTGGT--ACAGT--TG-CA--TT--ATAAA-AGTAT-CAA-------A-AAAATC-----A----TAGG-TA-----T-A-----------TC-ATTAACATG----TA-TTTAAT-TG---TTTC--TTGGAAAAGC-AA-AATT
gi|11 : cAGGGCT-CGACA-TTAACG-CTTGTC--------T-GGTACCAGCAGAAA-CAATT-TACTG-GACAAG-T---G-A---T-ATT
gi|11 : ACTGGACAAGTGA-TATTTTTTAGG-ATTAACGCTTGTCT----------------GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTTGTTATC--GATG--A-TTT-A--ATT-GT-ATCTCAA-AGTT-GGACAAAGGCTG---T-GCG-TCAAAACGAGAT-C-G--CC-GAC---T-AAA-T-CGGG---ATCGAAGTT-CATTAGAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GAAATATGGA-T--------------------TATTC--GTTT-C-GGGCTACA-T-C-ACC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-TTCCAC-AT-GA-A-GCGTATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGGAAAAC-TTTT-TTGCAG----TG-CTCA--T----GTCAAT-G-TTT-A---GAGTGCGCG-----A--AACC-TTT-CCTCGAT-AGA-CATCTCGttttaggattaacgcttgtctgatgtctcaagaagtatatataaaaataaaaccaagaaagtattttgttgttatcgatgatttaattgtatctcaaagttggacaaaggctgtgcgtcaaaacgagatcgccgactaaatcgggatcgaagttcattagaattgttctactttcaatctaaggaaatatggattattcgtttcgggctacatcaccttgtcctacactttttggcgccactacagttgcatcttgtgaagtcttttccacatgaagcgtattgagaaatcaccgccgagcgcaggaaaacttttttgcagtgctcatgtcaatgtttagagtgcgcgaaacctttcctcgatagacatctcg
gi|12 : agggctcgacattaacgcttgtctggtaccagcagaaacaatttGGGCT-CGACA-TTAATG-CTTGTC-----G--C-GGTACCAGCAAAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTT-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CGAGACATAAAT-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-AATATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---T-GGC-TCAAAACGAGAT-C-A--CC-GAC---T-AAA-T--GGA---ATCGAAGTT-CACTAAAA-TT-G--TT-TTACTT-T-CAATCTAATAT--GACT-------T--------------------T-TCC--GTTT-C-GGGCAACA-T-CGGCC-TTG-TCCT---A--C-A--CTTTTT
gi|13 : GGGCTGCGACA-TTAACG-CTTGTCCG---------GTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---T-A---T-ATTG-C-C-CGTACTTTACTTGTCCGACTGGAGAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CTAG-----AAG-TAT-ATA-T--AA-AT-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTGTC--GATG--A-TTT-T--ATC-GT-ATATCAA-AGTT-GGACAAAGGTTT---T-GCG-TCAAAACGAGAT-C-G--CC-GAC---T-AAA-T-CCGG---ATCGATGTT-CATTAAAA-CT-G--
gi|14 : TAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---T-GCA-TCAAAACGAGAT-C-A--CC-GAC---T-AAA-T--GGA---ATCGAAGTT-CACTAAAA-TT-G--TT-TTACTT-T-CAATCTAATAT--GACT-------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--CAA--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GCGAA-GT-CTT-GTCCAC-
gi|15 : TT-A---GAGGGCGCGA-A--A----CC-TGTCG-TCGAT-AGAACATCTTGA--CTTTGCTTG-A
gi|16 : ATT-CAC-A--ACAAGAA---A-A---TTATTG-CAT-AGTACT-----TTTCCGACTGGAAAAATGA-T-TTTGTCA--CATT------TCAAAAA----------AA--GAaggagaggaagattgaagcaacaagcagtggttcagacaattttaaaaactgaaccgtattcactaaattcgctcatgtttccgtcgtttaaacgcagctgtgtacttaaatgtaggtcttaggtaatgatgtggattacgcgaattc
gi|16 : aaaaatAAAA---AAGAA--TA-CT---TTGTTATTATC--TATATAA-TTT-T--ATG-AA-ATCTCAA-AGTT-G-----AGACTG---T-GC-----AGATGAG---C-G--C--GAT---T-AAA-T-CGGG---ATCGAAATT-CATTTTAA-GT-G--TT-CTA-TT-T-CGATCTatactttgttattatctatataattttatgaaatctcaaagttgagactgtgcagatgagcgcgattaaatcgggatcgaaattcattttaagtgttctatttcgatct
gi|17 : aaaaatattcacaacaagaaaattattgcatagtacttttccgactggaaaaatgattttgtcacatttcaAGGGCT-CGACA-TTAACG-CTTGTCCACTT---------TCAGCAGAAA-CAATT-TAC-G-GACAAGTTCATACA---T-ATTGGC-C-AGTACT-----TGTCCGACTGGACAAGTGA-TA-TTTTTAGGC-TTAG----TTTAGAA----------AA--GATGTC-CT---------------CAAG-----AAG-TAT-ATA-T---A-AA-ATAAAA-CCAAGAAAGTATTT---TTGTCGTTATC--G-TG--ATTTT-A--ATC-
gi|18 : GGCT-CGACA-TTAACGGCTTG-CCACTT---------TCAGCAGAAAACAATT-TAC-GCGACAAGTT---C-A---T-ATTG-C-C-AGTACT-----TGT-CGACT-GACAAGTGA-TA-TTTTTAGG-ATTA-----TTTATAA----------AA--GA-GTCGCT---------------CAAGGA---GAG-TAT-ATA----AA-AA-ATAGAA-ACAAGAAAGTA-TT---
gi|19 : T-CTT-GTCCAC-CA-GA-A-GCGGATTGAGAAA-TT-ACA-GCC-GAGC--GC-AGTAAAAC-TTTT----------------------ATCGTCAGT-G-TTT-A---GAACACGCG-----A--AACC-TTT-CCTCGAT-AGA-CATCTCGg
gi|2 : GGGCT--GACA-TTAATG-CTTGTCCGC-TGTAC-AGTACCAGCAAAAA-CAATTCTAC-G-GACAG--T---G-A---T-ATTT-T-T-AG---T-----TG----------CA------------TTAGG------------TAGAA----------AA--GATGA--TA---------------TAAG-----ACGCTAT-ATA-T--AA-AATACACAC-CCAAGAAAGTA-TT---TTGTTGTT-TCTGGATG--A-TTT-A--ATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---TGGCG-TCAAAACAAGATGCAA--CCGGAT---TAAAA-T-CGGG---AT-GAAGTT-CACTAAAATTT-GGTTT-TTACTT-TCCAATCTAT-AT--GC---------T--------------------T-TTC--GTTT-TGGGGCAACA-T-C-GCC-TTGTTCCTA--A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CAG---TC-TT-----TGAA-GT-CTT-GTCCAC-CTAGA-AGGCGGAATGAGAAA-TC-ACTGGCC-GAGC--GCTGGTAAAAC-TTTT-TT-CAGTGCATG-CTCA--CGGTCGTCAGTGG-TTT-A---GAAGGCGTG--A--A--AACC-TTTCC--TGAT-AGA-CATCTCAA--C-TTGCTTGAATTC-A-CCT------TT--TGAT-TTTTAGTGGAGAAC--G--GACA-CACAG--TGATAATAATTG------TTTG-----ACTGT---A-AAG----T--TTTTT-T----------TTTAT------TTT-----GTTT---CTG--AACAA--GG-CAG-TTCTGT-TTT--T-AATTT--GT--ACAGT--TAGCA--TT--ATAAA-AGTAATCAAC------ACAATTTC-----A----TAGG-TA----TT-AAGATAAATTACTC-ATTAATATGT--T--TTTTAAGATG---TTTCTTTTGGACAAGC-AACAATT
gi|20 : T-G-TTT-A---GAGGGCGCGA-A--A----CC-TTTCC-TCGAC-AGA-CATCTTGA--CTCTGCTTG-a
gi|21 : GGACAAGTGA-TATTTTTTAGGCATTA-----TATAGAA----------TA--GATGT--TT---------------CAAG-----AAG-TATAATA-T--AA-AA-ATAAAA-CCAAGAAAGggggaaaggaagaatgaagcaacaaacagtagttcagaaacttttgaaa
gi|22 : -TA----TT-A-----------TT-ATTAAAATGT--TTATTTTGAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
gi|23 : taaatcatgtactAGAGGTTG---T-GTG-T----ATGA--T-C-A--CT-GAT---T-AAA-T-CGGA---ATCAAAATT-CATT-ATG-TC-A--TT-CTACTT-T-CAgtg
gi|24 : -A-A-AAG----T--TTTTT-A----------T---T------TTT-----GCTTA--CTG-AA-CAACTGGGCAG-TTCTGT-TTT--T-AATTT-GGT--ACAGT--T
gi|25 : -AAG----T---TTTT-A----------C---T------TTT-----GTTTA--CTG-AA-CAT--GGACTG-TTCTGT-TTT--T-AA-TTTGAT--ACAGT--TA-TA--
gi|26 : CAC-CA-GA-A-GCGGATTGAGAAA-TC-ACA-GTC-GAGC--GC-AGTAAAAC-TTT---------------------T-GTCGTCAGT-G-T
gi|27 : --A--AACC-AT-CCCTCGGT-AGG-CATCTTGA--TTTTGCTTG-A
gi|28 : CAGGGCT-CAACA-TTAACG-TTTGTCCGATTGT-C-ggacaaggaagaattaa
gi|29 : taAGGGCT-CAACA-TTAACG-TTTGTCCGATTGT-
gi|3 : tatCAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGT-CCGGTACCAGCAAAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGATAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAT-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAATA-TT---TTGTCGTTATC--GATG--A-TTC-A--ATT-GT-ATCTCAA-AG-T-GGACAAAGGCTG---T-GCG-TCAAAAGGAGAT-C-G--CC-GTC---T-AAA-T-CGGG---ATCAAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTC-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TT-TT----GTGAA-GG-CTT-GTCCAC-CA-GA-C-GCGGATTGAGAAA-TC-AT-------AGC--GC-AGTAAAACGTTTT-TT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGGCGCGA-A--AATAACC-TTTCCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAAGCCTTA-A--TTA-TGA--TTTTAGGGGAG-AC--G--G--A-GAAAGT-TGATTATAAATAA------TTG-----ACTGT-A-A-AAG----T--GTTTT-A----------T---T------TTT-----GTTTA--CTG-AAACAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AG---------------------------A----TA-G-TA----GT-A-----------TT-ATTAAAATGT--TTATTTTAAT-GT---TTTC-TTTGGACAAG--AA-AATTT
gi|30 : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTT
gi|4 : agAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGT-CCGGTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTA-T-----TGTCTGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAG-A----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATATT--AA-AA-ATAAAA-CCAAGAAAATA--T---TTGTCATTATC--GATG--A-TTT-AT-ATC-GT-ATCTCAA-AGTT-GGACAAAGGCTG---T-GCG-TCAAAAGGAGAA-C-G--CC-GTC---T-AAA-T-CGGG---ATCTAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-C-----------------AAA-TT-AT-------ATC--GC-AGTAAACCGTTTT-TT-CAG----TG-CGGA--T-TTCGTCAGT-G-TTT-A---TAAGGCGCGA-A--A-----C-CTTGCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCCTTAA--TTA-TGA--TTTTATGGGAG-GT--G--G--A-GAAAG--TGATTAAAAATGA----TTGTTTG---ACTGT-A-T-AGG----TTGTTTTT-A----------T---T------TTT-----GTTTA--CTG--AACAA--GGACAG-TTCGGT-TTT--T-AA-TTTGGT--ACAGT--TA-TA--TTG-ATA--------------------------------------A-G-CA----TT-A-----------TT-ATTAAAATGT--TTATTTTATT-TG---TTTC-TTTGGCCAAGC-AA-
gi|5 : GGGCT-CGACA-TTAACG-CTTGTCCGTT---------ACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAAAAGATGTCTCAA--GAAGT--ATATATAAAAATATAACCAAG-----GTA-TAT-ATA-T--AA-AA-ATATAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATA--A-TTT-A--ATC-GT-ATCTCGA-AGTT-GTACAAAGTCTG---T-GCG-TCAAAACGAGAT------CC-AA----T-AAA-T-CGGG---ATCGAAGTT-CATT-AAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA--------------------------------------ATT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGT---------------------------T-CTT-ATCCAC-CT-GA-A-GTGGATTGAGAAA-TC-ACC-G-C-GAGC--GC-AGTAAAAC-TTTC-T----G----TG-CTTT--T-GTTGTCAG--G-TTT-A---GAAGGCGCG-----A--AACC-TT
gi|5 : AA-CCTT--A--ACAGCGA--TTTGAGGGGAG-AC--A--G--A-AACAG--TGATTA--AATAA----TTGTTTG---ACAGT-A-A-AAG----T--TTTTT-T----------T---TGTTT--TTT-----GTTTA--CTG-AA-CAA--GGACAG-TTCTGT-TTT--TTAATTTA-----ATAGT--TA-CA--TTA-ATAAA-AGTA--TCA-------A-AA---C-----AATCATA-G-TA----TT-A-----------TT-ATTAAAATGT--T-ATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTTaacagcgatttgaggggagacagaaacagtgattaaataattgtttgacagtaaaagtttttttttgttttttgtttactgaacaaggacagttctgttttttaatttaatagttacattaataaaagtatcaaaacaatcatagtattattattaaaatgttattttaattgtttctttggacaagcaaaattt
gi|6 : gggctcgacattaacgcttgtccgttaccagcagaaacaatttacggacaagttaatattgccagtacttgtccgactggacaagtgatattttttaggcattatgtagaaaagatgtctcaagaagtatatataaaaatataaccaaggtatatatataaaaatataaccaagaaagtattttgtcgttatcgataatttaatcgtatctcgaagttgtacaaagtctgtgcgtcaaaacgagatccaataaatcgggatcgaagttcattaaattgttctactttcaatctaaggaattcgggcaacatcgccttgtcctacactttttggcgccactacagttcttatccacctgaagtggattgagaaatcaccgcgagcgcagtaaaactttctgtgcttttgttgtcaggtttagaaggcgcgaCCGCTTGT-CCGGTACCAGCAGAAA-CAATT-TAC-G-GACA-GTT---A-A---T-ATGG-C-C-AGTA-T-----TGTCTGACTGGACAAGTGAATATTTTT-AGGCATT------TGTAGAA----------A---GATGT--CT---------------CAAG-----AAG-TAT-ATA-TTAAA-AA-ATAAAA-CCAAGAAAATA-TTGTTTTGTCATTTAC--GATG--A-TTT-A--ATC-GT-ATCTCAA--GTT-GGACAAAGGCTG---T-GCG-TCAAAAGGAGAA-C-G--CC-GTC---T-AAA-T-CGGG---ATCTAAG-T-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCTA--A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-C------------------AA-TC-A-------GAG---GCGAGTAAACCTTTTT-TT-CAG----TG-CTTA--T-GTCGTCAGT-G-TTT-A---GAAGGCGCG--------AACC-TTT-CCTCGAT-AGA-CATCTCG---CTTTGCTTG-ATTCAA-CCTT--A--TTA-TGA--TTTTAGGGGAG-ATG-G--G--A-GAAAG--TGATTA-AAATAA----TTGTTTG---ACTGT-ATATAAG----TTGTTTTT-A----------T---TC-----TTT-----GTTTA--CTG--AACAA--GGACAG-TTCTGT-TTT--T-TAATTTGGT--ACAGTAGTT-CA--TTG-ATA--------------------------------------A-G-CA----TT-A-----------TT-ATTAA-ATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATT
gi|7 : -ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTTTA--ATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---T-GCA-TCAAAACGAGAT-C-A--CC-GAC---T-AAA-T--GGA---ATCGAAGTT-CACTAAAA-TT-G--TT-TTACTT-T-CAATCTA--ATATGACT-------T--------------------T-TTC--GTTT-C-GG-CAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GCGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-AAGC--GC-TGTTAAAC-TTTT-TT-CAG----TG-CTCA--T-GTCATCAGT-G-TTT-A---GAAGGCGCG-----A--AACC-TTT-CCTCGAT-AGA-CATCTCAA--CTTTGCTTG-ATTCAACCCTT--A------TGA--TTTTAGTGGAG-AC-------------AG--TGAT--TAAATAA------TTGTTG--ACTGT-T-T-AAGTTT-T--TTTTT-A----------T---T------TTT-----GTTTA--CTG--AACAA--GGACAG-TTCTGT-TTT--T-AA-TTTGGT--ACAGT--TA-CA--TTA-TTAAA-AGTAT-CAACAC----A-AA---C-----A----TA-G-TATTAGTT-A-----------TC-ATTAATATG---TTATTTTAAT-TG---CTTC-TTTGGACAAGC-AA-AATTTgt
gi|8 : AAGTT-CATTAAAA-TT-G--TT-TTTCTT-T-CAATCTA--AG--GA---------TATGGCCCTTTCTCTTCTCTTT-TTCTGGTTT-C-GGGCAACAAT-C-GC--TTG-TCCCCTAA--C-AACTTTTTTGGCTGC--CAGT----TTG---CAATCCTC-TTTTTGGTGAA-GT-TTT-GTCCAC-CT-GA-AAGCGGATTGAGAAC-TCTACC-GTC-GAGCTTGC-ACTAA--C-TTTTTTT-CAG----TG-CTCT--G-GTCGTCAGT-G-TTT-ATTCGAGGGTCCGT-G--A--AACCGCTTTCCTCGATAAGA-CA-CTCGACTCTTTGCTTG-ATCCAC-CCTT--A------TGATTTTTTA-GGGAG-AC--GCCG--A-GCCAGCCTGATTTTTAATGAGTTTTTTTGTTG--ACTGT-A-A-AAGTTGTT--TTTCT-ATCTTTATTTTT---T------TTT-----GTTTA--CTG--AACAG--GGACAG-TTCTTTATTT--T-AATTTTGGT--AC-GT--TA-CAACATGTATAAAGAGTA--CAA-------A-CA---CATCATA----TA-G-TA----TTAA-----------TTGATTTAAATGTTATTCTTATATT-TGCTTTTTC-TTGCGACAAGC-Ag
gi|9 : TCGA-AGTT-GGACAAAGGCTG---T-GTGGTCAAAACGAGAT-C-GGGCC-GAC---T-AAA-TGCGGGGAGATCGAAGTTGCATTAAAA-TT-G--TT-CTATCT-T-CA-TCTA--AG--GAAATATGGCTT--------------------T-TTC--GTTTGC-GGGCAACA-T-C-GC--TTG-TCCT---AAAC-A--CTTTTTGGC-GCGACACAACAGTTGGGGCA----TC-TT----GTTAA-GTTCTT-ATCCAC-CT-GA-A-GCGGATTGAGAAA-TC-CCC-GCC-GAGT--GC-AGTAAACT-TTTT-TT-CAG----TG-CTCAAGT-GTTGTCCAT-G-TTTAA---GAAAGAACGC-ATTA--AACC-TTT-CCTCGAT-AGA-CA---------TTTG--------------------------GA--TTTTAGGGGAG-ACGTG--G--A-GACAG--TGAT--TAAATAA------TTGTTGG-ACTGT-A-A-ATT----T--TTTTTGG----------T---T------TTTTTTTGGTTTAAGCTG-AAGCAA--GGACA--TTCTGT-TTT--T--ATTTTGGTGAGCAGT--TG-CA--TTA-AT-AA-AGTAT-CAA-------A-AAT--C-----A----TA-GCTA----TT-A-----------TC-ATTAACATGT--TAATTTTATT-GG---TTTC-TTTGGCAAAGCAAA-AATTTtcaat
Alignments
lowQualScore : 333333333 111111 1111111111 222222222222222 11111 11 777777777777777777777777777777 111 1111 111 1 111111111 222 222222222 1111111 33333333333333333333333 22 1 11 6666666666666666666666 1111111 11111111111
lowQualScore : 3 3 3 666666666 3 3 3 3 66666 555 3 3 3 3 1 99999 3 0 1 111111 3333333333 44 77 000000000000000 22222 3 3 3 44 3 3 2 2 555 44 44 3 3 77 3 3 2 2 444 2 2 2 6666 5 444 2 2 2 444 2 0 2 2 33 2 2 2 11 44 777777777777777777777777777777 3 44 3 3 3 3 3 3 3 111 44 3 44 6 44 555 0000 3 7777 3 3 3 2 77 3 6 3 3 9999 3 77 6 9 3 3 0 6666 3 44 3 2 2 2 555 77 33 222 444 8 2 0 2 2 1 44 3 44 888888888 2 4 99 55 55 4 99 666 999999999 4 55 555 3 3333333 44444444444444444444444 88888 44 22 0 44 3 3 44 3 3 1 44 44 3 55 00 0 4 6666 2222222222222222222222 8 3 55 0000000 3 77777777777 3 4 55 2 3 666 3 4 4
lowQualScore : . . . ......... . . . . ..... ... . . . . . ..... . . . ...... .......... .. .. ............... ..... . . . .. . . . . ... .. .. . . .. . . . . ... . . . .... . ... . . . ... . . . . .. . . . .. .. .............................. . .. . . . . . . . ... .. . .. . .. ... .... . .... . . . . .. . . . . .... . .. . . . . . .... . .. . . . . ... .. .. ... ... . . . . . . .. . .. ......... . . .. .. .. . .. ... ......... . .. ... . ....... ....................... ..... .. .. . .. . . .. . . . .. .. . .. .. . . .... ...................... . . .. ....... . ........... . . .. . . ... . . .
lowQualScore : 1 1 1 555555555 6 3 3 3 88888 888 3 6 6 6 4 11111 1 4 5 222222 5555555555 22 99 888888888888888 99999 3 3 3 66 3 1 7 9 000 22 22 1 1 33 1 3 9 9 777 7 7 7 0000 3 777 7 7 7 777 5 4 5 5 44 7 7 7 55 22 111111111111111111111111111111 1 22 1 1 1 1 1 1 1 555 22 1 22 7 66 888 4444 3 1111 3 1 1 9 66 1 2 1 1 5555 1 33 2 2 1 1 3 5555 1 22 1 9 9 9 000 99 99 222 777 9 6 7 9 9 5 66 3 77 222222222 5 0 55 55 55 0 55 999 222222222 0 55 111 3 1111111 11111111111111111111111 33333 66 99 4 66 3 3 66 3 6 3 66 66 6 00 44 8 0 0000 6666666666666666666666 0 6 00 4444444 6 33333333333 6 5 00 3 6 444 6 0 4
consensus : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGT-C-GGTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGTT-GGACAAAGGCTG---T-GCG-TCAAAACGAGAT-C-G--CC-GAC---T-AAA-T-CGGG---ATCGAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGTAAAAC-TTTT-TT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCGA--A---AACCTTTCCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCTT--ATTA-TGATTTTAGGGGAG-AC--G--G--A-GACAG--TGATTATAAATAA----TTTTGTT-G--ACTGT-A-A-AAG----T--TTTTT-A----------T---T------TTT-----GTTTA--CTG-AAACAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AGT-ATCAA-------A-A--A---C-----ATA-G-T--A----T--T-A-----------TT-ATTAANATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
Reference ( family-2238 ) : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGT-C-GGTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGTT-GGACAAAGGCTG---T-GCG-TCAAAACGAGAT-C-G--CC-GAC---T-AAA-T-CGGG---ATCGAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGTAAAAC-TTTT-TT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCGA--A---AACCTTTCCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCTT--ATTA-TGATTTTAGGGGAG-AC--G--G--A-GACAG--TGATTATAAATAA----TTTTGTT-G--ACTGT-A-A-AAG----T--TTTTT-A----------T---T------TTT-----GTTTA--CTG-AAACAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AGT-ATCAA-------A-A--A---C-----ATA-G-T--A----T--T-A-----------TT-ATTAANATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
gi|1 : GCT-CGACAATTAACG-CTTATCCG--TA-------ACCAGCAGAAA-CAATT-TAC-G-GACACGTT---A-AGAAT-AGTG-C-CTAGTACT-----T-TCCAAC-GGACAAGTGC-TATTTTAT-GGCATTA-----TGTAGAA----------AAAAGATGT--CT---------------CATT-----AAG-TAC-ATT-T--AAGAA-ATAAAAACCAAGAA-GTA-TT---TTGTCGTTATC--GATG--A-TT--A--ATCCGTTATCTCAACAGTTTGGACTAAGGATGGCTC-GCG-TCAAAATGAGAT-CCG--CCCGGCACTT-AAA-T-CGGG---ATCAAAGTT-CATTTAAA-TT-G--TTTCTACTTAT-CAATC-A--AG--GAAATGTGGCTT--------------------T-TTC--GTTT-C-GGGCAACA-TTC-GCC-TTG-TCCT---A--C-A--CTTTTTGGCTGC--CACTATAGTTG---CA----TC-TT----GTGAA-GT-CTTTGTCCAC-CT-GA-A-GCGGATTGAGAAAATC-CCC-GCCCGAGCC-GC-AGTAAAAC-TTTT-TT-C------TG-CTCA--T-GTCGTCAGT-G-TTT-G---GAAGG--CCGGTGA--A---A-CCTTTACCCCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCCTG-ATTT-TGATTTTAGGGGA--AC--G--G--A-GACAG--TGAT--TAAATGATT--TTTTGTT-G--ACTGTGA-A-AAG----T--TTTTT-T----------T---TGTTAAATTG-----GTCTA--CTGAAAACAA---GACAG-TTATG--TTT--T-AATTT--GT--ACAGT--TA-CA--TTA-ATAAA-AAT-ATCAACACTCACA-A--T---C-----ATA-G-TTAA----TTGT-G-----------TT-GTTAGC---T--CTATTGCAAT-GG---CTGC-TT
gi|10 : CGA-AGT--GGACAAAGGCT----T-GTG-TCAAAACGCGAT-C-G--CC-GAC---T-AAACT-CG-----ATCGA-GTT-CAATAAAA-TTTG--TT-CTACTT-C-TAA-CTA--AG--AAACTATG---T--------------------T-TTC--GTTT-C-GG-CAAC--T-C-GCCGTTG-TCCT---A--C-A--CTTTTTGGC-GC--CACAACAGTTC---AA----TCTTT----GTTAAGGT-CTT-ATCCACGCT-GAGA-GCGGATTGAGAAA-T---CC-G-C-GAGT--GC-AGTAAAAC--TTT-TT-CAG----TGCCTCA--T-GTTGTCATT-GTTTT-A---GAAGA--C--GCAA--A---A--CTTTCCCTCGAT-AGA-CA--------------TTG-ATTTA----------------------GGGAG-AC--G--G--AGGACAG--TGAT--TAAATA------TTTGTT-GGAACTGT-A-A-A------T--TTTTT-GGTTT------T---T------TTT-----GGTTA--CTG--AACAA--GGACAGTTTCTGT-TTTTCT-AA--TTGGT--ACAGT--TG-CA--TT--ATAAA-AGT-ATCAA-------A-A--AAATC-----ATAGG-T--A-------T-A-----------TC-ATTAACATG----TA-TTTAAT-TG---TTTC--TTGGAAAAGC-AA-AATT
gi|11 : cAGGGCT-CGACA-TTAACG-CTTGTC--------T-GGTACCAGCAGAAA-CAATT-TACTG-GACAAG-T---G-A---T-ATT
gi|11 : ACTGGACAAGTGA-TATTTTTTAGG-ATTAACGCTTGTCT----------------GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTTGTTATC--GATG--A-TTT-A--ATT-GT-ATCTCAA-AGTT-GGACAAAGGCTG---T-GCG-TCAAAACGAGAT-C-G--CC-GAC---T-AAA-T-CGGG---ATCGAAGTT-CATTAGAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GAAATATGGA-T--------------------TATTC--GTTT-C-GGGCTACA-T-C-ACC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-TTCCAC-AT-GA-A-GCGTATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGGAAAAC-TTTT-TTGCAG----TG-CTCA--T----GTCAAT-G-TTT-A---GAGTG--C--GCG---A---AACCTTT-CCTCGAT-AGA-CATCTCGttttaggattaacgcttgtctgatgtctcaagaagtatatataaaaataaaaccaagaaagtattttgttgttatcgatgatttaattgtatctcaaagttggacaaaggctgtgcgtcaaaacgagatcgccgactaaatcgggatcgaagttcattagaattgttctactttcaatctaaggaaatatggattattcgtttcgggctacatcaccttgtcctacactttttggcgccactacagttgcatcttgtgaagtcttttccacatgaagcgtattgagaaatcaccgccgagcgcaggaaaacttttttgcagtgctcatgtcaatgtttagagtgcgcgaaacctttcctcgatagacatctcg
gi|12 : agggctcgacattaacgcttgtctggtaccagcagaaacaatttGGGCT-CGACA-TTAATG-CTTGTC-----G--C-GGTACCAGCAAAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTT-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CGAGACATAAAT-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-AATATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---T-GGC-TCAAAACGAGAT-C-A--CC-GAC---T-AAA-T--GGA---ATCGAAGTT-CACTAAAA-TT-G--TT-TTACTT-T-CAATCTAATAT--GACT-------T--------------------T-TCC--GTTT-C-GGGCAACA-T-CGGCC-TTG-TCCT---A--C-A--CTTTTT
gi|13 : GGGCTGCGACA-TTAACG-CTTGTCCG---------GTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---T-A---T-ATTG-C-C-CGTACTTTACTTGTCCGACTGGAGAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CTAG-----AAG-TAT-ATA-T--AA-AT-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTGTC--GATG--A-TTT-T--ATC-GT-ATATCAA-AGTT-GGACAAAGGTTT---T-GCG-TCAAAACGAGAT-C-G--CC-GAC---T-AAA-T-CCGG---ATCGATGTT-CATTAAAA-CT-G--
gi|14 : TAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---T-GCA-TCAAAACGAGAT-C-A--CC-GAC---T-AAA-T--GGA---ATCGAAGTT-CACTAAAA-TT-G--TT-TTACTT-T-CAATCTAATAT--GACT-------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--CAA--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GCGAA-GT-CTT-GTCCAC-
gi|15 : TT-A---GAGGG--C--GCGA--A---A-CCTGTCG-TCGAT-AGAACATCTTGA--CTTTGCTTG-A
gi|16 : ATT-CAC-A--ACAAGAA---A-A---TTATTG-CAT-AGTACT-----TTTCCGACTGGAAAAATGA-T-TTTGTCA--CATT------TCAAAAA----------AA--GAaggagaggaagattgaagcaacaagcagtggttcagacaattttaaaaactgaaccgtattcactaaattcgctcatgtttccgtcgtttaaacgcagctgtgtacttaaatgtaggtcttaggtaatgatgtggattacgcgaattc
gi|16 : aaaaatAAAA---AAGAA--TA-CT---TTGTTATTATC--TATATAA-TTT-T--ATG-AA-ATCTCAA-AGTT-G-----AGACTG---T-GC-----AGATGAG---C-G--C--GAT---T-AAA-T-CGGG---ATCGAAATT-CATTTTAA-GT-G--TT-CTA-TT-T-CGATCTatactttgttattatctatataattttatgaaatctcaaagttgagactgtgcagatgagcgcgattaaatcgggatcgaaattcattttaagtgttctatttcgatct
gi|17 : aaaaatattcacaacaagaaaattattgcatagtacttttccgactggaaaaatgattttgtcacatttcaAGGGCT-CGACA-TTAACG-CTTGTCCACTT---------TCAGCAGAAA-CAATT-TAC-G-GACAAGTTCATACA---T-ATTGGC-C-AGTACT-----TGTCCGACTGGACAAGTGA-TA-TTTTTAGGC-TTAG----TTTAGAA----------AA--GATGTC-CT---------------CAAG-----AAG-TAT-ATA-T---A-AA-ATAAAA-CCAAGAAAGTATTT---TTGTCGTTATC--G-TG--ATTTT-A--ATC-
gi|18 : GGCT-CGACA-TTAACGGCTTG-CCACTT---------TCAGCAGAAAACAATT-TAC-GCGACAAGTT---C-A---T-ATTG-C-C-AGTACT-----TGT-CGACT-GACAAGTGA-TA-TTTTTAGG-ATTA-----TTTATAA----------AA--GA-GTCGCT---------------CAAGGA---GAG-TAT-ATA----AA-AA-ATAGAA-ACAAGAAAGTA-TT---
gi|19 : T-CTT-GTCCAC-CA-GA-A-GCGGATTGAGAAA-TT-ACA-GCC-GAGC--GC-AGTAAAAC-TTTT----------------------ATCGTCAGT-G-TTT-A---GAACA--C--GCG---A---AACCTTT-CCTCGAT-AGA-CATCTCGg
gi|2 : GGGCT--GACA-TTAATG-CTTGTCCGC-TGTAC-AGTACCAGCAAAAA-CAATTCTAC-G-GACAG--T---G-A---T-ATTT-T-T-AG---T-----TG----------CA------------TTAGG------------TAGAA----------AA--GATGA--TA---------------TAAG-----ACGCTAT-ATA-T--AA-AATACACAC-CCAAGAAAGTA-TT---TTGTTGTT-TCTGGATG--A-TTT-A--ATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---TGGCG-TCAAAACAAGATGCAA--CCGGAT---TAAAA-T-CGGG---AT-GAAGTT-CACTAAAATTT-GGTTT-TTACTT-TCCAATCTAT-AT--GC---------T--------------------T-TTC--GTTT-TGGGGCAACA-T-C-GCC-TTGTTCCTA--A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CAG---TC-TT-----TGAA-GT-CTT-GTCCAC-CTAGA-AGGCGGAATGAGAAA-TC-ACTGGCC-GAGC--GCTGGTAAAAC-TTTT-TT-CAGTGCATG-CTCA--CGGTCGTCAGTGG-TTT-A---GAAGG--C--GTGA--A---AACCTTTCC--TGAT-AGA-CATCTCAA--C-TTGCTTGAATTC-A-CCTT--TTGA-T--TTTTAGTGGAGAAC--G--GACA-CACAG--TGAT----AATAA----TTGT-TT-G--ACTGT---A-AAG----T--TTTTT-T----------TTTAT------TTT-----GTTT---CTG--AACAA--GG-CAG-TTCTGT-TTT--T-AATTT--GT--ACAGT--TAGCA--TT--ATAAA-AGTAATCAAC------ACA--ATTTC-----ATAGG-T--A----T--T-AAGATAAATTACTC-ATTAATATGT--T--TTTTAAGATG---TTTCTTTTGGACAAGC-AACAATT
gi|20 : T-G-TTT-A---GAGGG--C--GCGA--A---A-CCTTTCC-TCGAC-AGA-CATCTTGA--CTCTGCTTG-a
gi|21 : GGACAAGTGA-TATTTTTTAGGCATTA-----TATAGAA----------TA--GATGT--TT---------------CAAG-----AAG-TATAATA-T--AA-AA-ATAAAA-CCAAGAAAGggggaaaggaagaatgaagcaacaaacagtagttcagaaacttttgaaa
gi|22 : -T--A----T--T-A-----------TT-ATTAAAATGT--TTATTTTGAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
gi|23 : taaatcatgtactAGAGGTTG---T-GTG-T----ATGA--T-C-A--CT-GAT---T-AAA-T-CGGA---ATCAAAATT-CATT-ATG-TC-A--TT-CTACTT-T-CAgtg
gi|24 : -A-A-AAG----T--TTTTT-A----------T---T------TTT-----GCTTA--CTG--AACAACTGGGCAG-TTCTGT-TTT--T-AA-TTTGGT--ACAGT--T
gi|25 : -AAG----T--TTTT--A----------C---T------TTT-----GTTTA--CTG-AA-CAT--GGACTG-TTCTGT-TTT--T-AA-TTTGAT--ACAGT--TA-TA--
gi|26 : CAC-CA-GA-A-GCGGATTGAGAAA-TC-ACA-GTC-GAGC--GC-AGTAAAAC-TTT---------------------T-GTCGTCAGT-G-T
gi|27 : --A---AACCAT-CCCTCGGT-AGG-CATCTTGA--TTTTGCTTG-A
gi|28 : CAGGGCT-CAACA-TTAACG-TTTGTCCGATTGT-C-ggacaaggaagaattaa
gi|29 : taAGGGCT-CAACA-TTAACG-TTTGTCCGATTGT-
gi|3 : tatCAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGT-CCGGTACCAGCAAAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGATAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAT-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAATA-TT---TTGTCGTTATC--GATG--A-TTC-A--ATT-GT-ATCTCAA-AGT--GGACAAAGGCTG---T-GCG-TCAAAAGGAGAT-C-G--CC-GTC---T-AAA-T-CGGG---ATCAAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTC-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TT-TT----GTGAA-GG-CTT-GTCCAC-CA-GA-C-GCGGATTGAGAAA-TC-AT-------AGC--GC-AGTAAAACGTTTT-TT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCGA--AAATAACCTTTCCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAAGCCTTA-ATTA-TGATTTTAGGGGAG-AC--G--G--A-GAAAGT-TGATTATAAATAA---------TT-G--ACTGT-A-A-AAG----T--GTTTT-A----------T---T------TTT-----GTTTA--CTG-AAACAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AG-----------------------------ATA-G-T--A----G--T-A-----------TT-ATTAAAATGT--TTATTTTAAT-GT---TTTC-TTTGGACAAG--AA-AATTT
gi|30 : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTT
gi|4 : agAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGT-CCGGTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTA-T-----TGTCTGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAG-A----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATATT--AA-AA-ATAAAA-CCAAGAAAATA--T---TTGTCATTATC--GATG--A-TTT-AT-ATC-GT-ATCTCAA-AGTT-GGACAAAGGCTG---T-GCG-TCAAAAGGAGAA-C-G--CC-GTC---T-AAA-T-CGGG---ATCTAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-C-----------------AAA-TT-AT-------ATC--GC-AGTAAACCGTTTT-TT-CAG----TG-CGGA--T-TTCGTCAGT-G-TTT-A---TAAGG--C--GCGA--A---A--CCTTGCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCCTTAATTA-TGATTTTATGGGAG-GT--G--G--A-GAAAG--TGATTAAAAATGA----TTGT-TT-G--ACTGT-A-T-AGG----TTGTTTTT-A----------T---T------TTT-----GTTTA--CTG--AACAA--GGACAG-TTCGGT-TTT--T-AA-TTTGGT--ACAGT--TA-TA--TTG-ATA------------------------------------A-G-C--A----T--T-A-----------TT-ATTAAAATGT--TTATTTTATT-TG---TTTC-TTTGGCCAAGC-AA-
gi|5 : GGGCT-CGACA-TTAACG-CTTGTCCGTT---------ACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAAAAGATGTCTCAA--GAAGT--ATATATAAAAATATAACCAAG-----GTA-TAT-ATA-T--AA-AA-ATATAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATA--A-TTT-A--ATC-GT-ATCTCGA-AGTT-GTACAAAGTCTG---T-GCG-TCAAAACGAGAT------CC-AA----T-AAA-T-CGGG---ATCGAAGTT-CATT-AAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA--------------------------------------ATT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGT---------------------------T-CTT-ATCCAC-CT-GA-A-GTGGATTGAGAAA-TC-ACC-G-C-GAGC--GC-AGTAAAAC-TTTC-T----G----TG-CTTT--T-GTTGTCAG--G-TTT-A---GAAGG--C--GCG---A---AACCTT
gi|5 : AA-CCTT--AACAGCGATTTGAGGGGAG-AC--A--G--A-AACAG--TGATTA--AATAA----TTGT-TT-G--ACAGT-A-A-AAG----T--TTTTT-T----------T---TGTTT--TTT-----GTTTA--CTG-AA-CAA--GGACAG-TTCTGT-TTT--TTAATTTA-----ATAGT--TA-CA--TTA-ATAAA-AGT-ATCAA-------A-ACAAT--C-----ATA-G-T--A----T--T-A-----------TT-ATTAAAATGT--T-ATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTTaacagcgatttgaggggagacagaaacagtgattaaataattgtttgacagtaaaagtttttttttgttttttgtttactgaacaaggacagttctgttttttaatttaatagttacattaataaaagtatcaaaacaatcatagtattattattaaaatgttattttaattgtttctttggacaagcaaaattt
gi|6 : gggctcgacattaacgcttgtccgttaccagcagaaacaatttacggacaagttaatattgccagtacttgtccgactggacaagtgatattttttaggcattatgtagaaaagatgtctcaagaagtatatataaaaatataaccaaggtatatatataaaaatataaccaagaaagtattttgtcgttatcgataatttaatcgtatctcgaagttgtacaaagtctgtgcgtcaaaacgagatccaataaatcgggatcgaagttcattaaattgttctactttcaatctaaggaattcgggcaacatcgccttgtcctacactttttggcgccactacagttcttatccacctgaagtggattgagaaatcaccgcgagcgcagtaaaactttctgtgcttttgttgtcaggtttagaaggcgcgaCCGCTTGT-CCGGTACCAGCAGAAA-CAATT-TAC-G-GACA-GTT---A-A---T-ATGG-C-C-AGTA-T-----TGTCTGACTGGACAAGTGAATATTTTT-AGGCATT------TGTAGAA----------A---GATGT--CT---------------CAAG-----AAG-TAT-ATA-TTAAA-AA-ATAAAA-CCAAGAAAATA-TTGTTTTGTCATTTAC--GATG--A-TTT-A--ATC-GT-ATCTCAA--GTT-GGACAAAGGCTG---T-GCG-TCAAAAGGAGAA-C-G--CC-GTC---T-AAA-T-CGGG---ATCTAAG-T-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCTA--A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-C------------------AA-TC-A-------GAG---GCGAGTAAACCTTTTT-TT-CAG----TG-CTTA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCG-------AACCTTT-CCTCGAT-AGA-CATCTCG---CTTTGCTTG-ATTCAA-CCTT--ATTA-TGATTTTAGGGGAG-ATG-G--G--A-GAAAG--TGATTA-AAATAA----TTGT-TT-G--ACTGT-ATATAAG----TTGTTTTT-A----------T---TC-----TTT-----GTTTA--CTG--AACAA--GGACAG-TTCTGT-TTT--T-TAATTTGGT--ACAGTAGTT-CA--TTG-ATA------------------------------------A-G-C--A----T--T-A-----------TT-ATTAA-ATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATT
gi|7 : -ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTTTA--ATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---T-GCA-TCAAAACGAGAT-C-A--CC-GAC---T-AAA-T--GGA---ATCGAAGTT-CACTAAAA-TT-G--TT-TTACTT-T-CAATCTA--ATATGACT-------T--------------------T-TTC--GTTT-C-GG-CAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GCGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-AAGC--GC-TGTTAAAC-TTTT-TT-CAG----TG-CTCA--T-GTCATCAGT-G-TTT-A---GAAGG--C--GCG---A---AACCTTT-CCTCGAT-AGA-CATCTCAA--CTTTGCTTG-ATTCAA-CCC----TTA-TGATTTTAG-------T--G--G--A-GACAG--TGAT--TAAATAA------TTGTT-G--ACTGT-T-T-AAGTTT-T--TTTTT-A----------T---T------TTT-----GTTTA--CTG--AACAA--GGACAG-TTCTGT-TTT--T-AA-TTTGGT--ACAGT--TA-CA--TTA-TTAAA-AGT-ATCAACAC----A-A--A---C-----ATA-G-T--ATTAGT--T-A-----------TC-ATTAATATG---TTATTTTAAT-TG---CTTC-TTTGGACAAGC-AA-AATTTgt
gi|8 : AAGTT-CATTAAAA-TT-G--TT-TTTCTT-T-CAATCTA--AG--GA---------TATGGCCCTTTCTCTTCTCTTT-TTCTGGTTT-C-GGGCAACAAT-C-GC--TTG-TCCCCTAA--C-AACTTTTTTGGCTGC--CAGT----TTG---CAATCCTC-TTTTTGGTGAA-GT-TTT-GTCCAC-CT-GA-AAGCGGATTGAGAAC-TCTACC-GTC-GAGCTTGC-ACTAA--C-TTTTTTT-CAG----TG-CTCT--G-GTCGTCAGT-G-TTT-ATTCGAGGGTCC--GTGA--A---ACCGCTTTCCTCGATAAGA-CA-CTCGACTCTTTGCTTG-ATCCAC-CCTT--ATGA-T--TTTTTAGGGAG-AC--GCCG--A-GCCAGCCTGATTTTTAATGAGTTTTTTTGTT-G--ACTGT-A-A-AAGTTGTT--TTTCT-ATCTTTATTTTT---T------TTT-----GTTTA--CTG--AACAG--GGACAG-TTCTTTATTT--T-AATTTTGGT--AC-GT--TA-CAACATGTATAAAGAGT-A-CAA-------A-C--A---CATCATATA-G-T--A----T--TAA-----------TTGATTTAAATGTTATTCTTATATT-TGCTTTTTC-TTGCGACAAGC-Ag
gi|9 : TCGA-AGTT-GGACAAAGGCTG---T-GTGGTCAAAACGAGAT-C-GGGCC-GAC---T-AAA-TGCGGGGAGATCGAAGTTGCATTAAAA-TT-G--TT-CTATCT-T-CA-TCTA--AG--GAAATATGGCTT--------------------T-TTC--GTTTGC-GGGCAACA-T-C-GC--TTG-TCCT---AAAC-A--CTTTTTGGC-GCGACACAACAGTTGGGGCA----TC-TT----GTTAA-GTTCTT-ATCCAC-CT-GA-A-GCGGATTGAGAAA-TC-CCC-GCC-GAGT--GC-AGTAAACT-TTTT-TT-CAG----TG-CTCAAGT-GTTGTCCAT-G-TTTAA---GAAAGAAC--GC-ATTA---AACCTTT-CCTCGAT-AGA-CA---------TTTG------------------------GATTTTAGGGGAG-ACGTG--G--A-GACAG--TGAT--TAAATAA------TTGTTGG--ACTGT-A-A-ATT----T--TTTTTGG----------T---T------TTTTTTTGGTTTAAGCTG-AAGCAA--GGACA--TTCTGT-TTT--T--ATTTTGGTGAGCAGT--TG-CA--TTA-AT-AA-AGT-ATCAA-------A-A--AT--C-----ATA-GCT--A----T--T-A-----------TC-ATTAACATGT--TAATTTTATT-GG---TTTC-TTTGGCAAAGCAAA-AATTTtcaat
Alignments
lowQualScore : 333333333 111111 1111111111 222222222222222 11111 11 777777777777777777777777777777 111 1111 111 1 111111111 222 222222222 1111111 33333333333333333333333 22 1 11 6666666666666666666666 1111111 11111111111
lowQualScore : 3 3 3 666666666 3 3 3 3 66666 555 3 3 3 3 1 99999 3 0 1 111111 3333333333 44 77 000000000000000 22222 3 3 3 44 3 3 2 2 555 44 44 3 3 77 3 3 2 2 444 2 2 2 6666 5 444 2 2 2 444 2 0 2 2 33 2 2 2 11 44 777777777777777777777777777777 3 44 3 3 3 3 3 3 3 111 44 3 44 6 44 555 0000 3 7777 3 3 3 2 77 3 6 3 3 9999 3 77 6 9 3 3 0 6666 3 44 3 2 2 2 555 77 33 222 444 8 2 0 2 2 1 44 3 44 888888888 2 4 99 55 55 4 99 666 999999999 4 55 555 3 3333333 44444444444444444444444 88888 44 22 0 44 3 3 44 3 3 1 44 44 3 55 00 0 4 6666 2222222222222222222222 8 3 55 0000000 3 77777777777 3 4 55 2 3 666 3 4 4
lowQualScore : . . . ......... . . . . ..... ... . . . . . ..... . . . ...... .......... .. .. ............... ..... . . . .. . . . . ... .. .. . . .. . . . . ... . . . .... . ... . . . ... . . . . .. . . . .. .. .............................. . .. . . . . . . . ... .. . .. . .. ... .... . .... . . . . .. . . . . .... . .. . . . . . .... . .. . . . . ... .. .. ... ... . . . . . . .. . .. ......... . . .. .. .. . .. ... ......... . .. ... . ....... ....................... ..... .. .. . .. . . .. . . . .. .. . .. .. . . .... ...................... . . .. ....... . ........... . . .. . . ... . . .
lowQualScore : 1 1 1 555555555 6 3 3 3 88888 888 3 6 6 6 4 11111 1 4 5 222222 5555555555 22 99 888888888888888 99999 3 3 3 66 3 1 7 9 000 22 22 1 1 33 1 3 9 9 777 7 7 7 0000 3 777 7 7 7 777 5 4 5 5 44 7 7 7 55 22 111111111111111111111111111111 1 22 1 1 1 1 1 1 1 555 22 1 22 7 66 888 4444 3 1111 3 1 1 9 66 1 2 1 1 5555 1 33 2 2 1 1 3 5555 1 22 1 9 9 9 000 99 99 222 777 9 6 7 9 9 5 66 3 77 222222222 5 0 55 55 55 0 55 999 222222222 0 55 111 3 1111111 11111111111111111111111 33333 66 99 4 66 3 3 66 3 6 3 66 66 6 00 44 8 0 0000 6666666666666666666666 0 6 00 4444444 6 33333333333 6 5 00 3 6 444 6 0 4
consensus : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGT-C-GGTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGTT-GGACAAAGGCTG---T-GCG-TCAAAACGAGAT-C-G--CC-GAC---T-AAA-T-CGGG---ATCGAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGTAAAAC-TTTT-TT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCGA--A---AACCTTTCCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCTT--ATTA-TGATTTTAGGGGAG-AC--G--G--A-GACAG--TGATTATAAATAA----TTTTGTT-G--ACTGT-A-A-AAG----T--TTTTT-A----------T---T------TTT-----GTTTA--CTG-AAACAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AGT-ATCAA-------A-A--A---C-----ATA-G-T--A----T--T-A-----------TT-ATTAANATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
Reference ( family-2238 ) : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGT-C-GGTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGTT-GGACAAAGGCTG---T-GCG-TCAAAACGAGAT-C-G--CC-GAC---T-AAA-T-CGGG---ATCGAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGTAAAAC-TTTT-TT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCGA--A---AACCTTTCCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCTT--ATTA-TGATTTTAGGGGAG-AC--G--G--A-GACAG--TGATTATAAATAA----TTTTGTT-G--ACTGT-A-A-AAG----T--TTTTT-A----------T---T------TTT-----GTTTA--CTG-AAACAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AGT-ATCAA-------A-A--A---C-----ATA-G-T--A----T--T-A-----------TT-ATTAANATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
gi|1 : GCT-CGACAATTAACG-CTTATCCG--TA-------ACCAGCAGAAA-CAATT-TAC-G-GACACGTT---A-AGAAT-AGTG-C-CTAGTACT-----T-TCCAAC-GGACAAGTGC-TATTTTAT-GGCATTA-----TGTAGAA----------AAAAGATGT--CT---------------CATT-----AAG-TAC-ATT-T--AAGAA-ATAAAAACCAAGAA-GTA-TT---TTGTCGTTATC--GATG--A-TT--A--ATCCGTTATCTCAACAGTTTGGACTAAGGATGGCTC-GCG-TCAAAATGAGAT-CCG--CCCGGCACTT-AAA-T-CGGG---ATCAAAGTT-CATTTAAA-TT-G--TTTCTACTTAT-CAATC-A--AG--GAAATGTGGCTT--------------------T-TTC--GTTT-C-GGGCAACA-TTC-GCC-TTG-TCCT---A--C-A--CTTTTTGGCTGC--CACTATAGTTG---CA----TC-TT----GTGAA-GT-CTTTGTCCAC-CT-GA-A-GCGGATTGAGAAAATC-CCC-GCCCGAGCC-GC-AGTAAAAC-TTTT-TT-C------TG-CTCA--T-GTCGTCAGT-G-TTT-G---GAAGG--CCGGTGA--A---A-CCTTTACCCCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCCTG-ATTT-TGATTTTAGGGGA--AC--G--G--A-GACAG--TGAT--TAAATGATT--TTTTGTT-G--ACTGTGA-A-AAG----T--TTTTT-T----------T---TGTTAAATTG-----GTCTA--CTGAAAACAA---GACAG-TTATG--TTT--T-AATTT--GT--ACAGT--TA-CA--TTA-ATAAA-AAT-ATCAACACTCACA-A--T---C-----ATA-G-TTAA----TTGT-G-----------TT-GTTAGC---T--CTATTGCAAT-GG---CTGC-TT
gi|10 : CGA-AGT--GGACAAAGGCT----T-GTG-TCAAAACGCGAT-C-G--CC-GAC---T-AAACT-CG-----ATCGA-GTT-CAATAAAA-TTTG--TT-CTACTT-C-TAA-CTA--AG--AAACTATG---T--------------------T-TTC--GTTT-C-GG-CAAC--T-C-GCCGTTG-TCCT---A--C-A--CTTTTTGGC-GC--CACAACAGTTC---AA----TCTTT----GTTAAGGT-CTT-ATCCACGCT-GAGA-GCGGATTGAGAAA-T---CC-G-C-GAGT--GC-AGTAAAAC--TTT-TT-CAG----TGCCTCA--T-GTTGTCATT-GTTTT-A---GAAGA--C--GCAA--A---A--CTTTCCCTCGAT-AGA-CA--------------TTG-ATTTA----------------------GGGAG-AC--G--G--AGGACAG--TGAT--TAAATA------TTTGTT-GGAACTGT-A-A-A------T--TTTTT-GGTTT------T---T------TTT-----GGTTA--CTG--AACAA--GGACAGTTTCTGT-TTTTCT-AA--TTGGT--ACAGT--TG-CA--TT--ATAAA-AGT-ATCAA-------A-A--AAATC-----ATAGG-T--A-------T-A-----------TC-ATTAACATG----TA-TTTAAT-TG---TTTC--TTGGAAAAGC-AA-AATT
gi|11 : cAGGGCT-CGACA-TTAACG-CTTGTC--------T-GGTACCAGCAGAAA-CAATT-TACTG-GACAAG-T---G-A---T-ATT
gi|11 : ACTGGACAAGTGA-TATTTTTTAGG-ATTAACGCTTGTCT----------------GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTTGTTATC--GATG--A-TTT-A--ATT-GT-ATCTCAA-AGTT-GGACAAAGGCTG---T-GCG-TCAAAACGAGAT-C-G--CC-GAC---T-AAA-T-CGGG---ATCGAAGTT-CATTAGAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GAAATATGGA-T--------------------TATTC--GTTT-C-GGGCTACA-T-C-ACC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-TTCCAC-AT-GA-A-GCGTATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGGAAAAC-TTTT-TTGCAG----TG-CTCA--T----GTCAAT-G-TTT-A---GAGTG--C--GCG---A---AACCTTT-CCTCGAT-AGA-CATCTCGttttaggattaacgcttgtctgatgtctcaagaagtatatataaaaataaaaccaagaaagtattttgttgttatcgatgatttaattgtatctcaaagttggacaaaggctgtgcgtcaaaacgagatcgccgactaaatcgggatcgaagttcattagaattgttctactttcaatctaaggaaatatggattattcgtttcgggctacatcaccttgtcctacactttttggcgccactacagttgcatcttgtgaagtcttttccacatgaagcgtattgagaaatcaccgccgagcgcaggaaaacttttttgcagtgctcatgtcaatgtttagagtgcgcgaaacctttcctcgatagacatctcg
gi|12 : agggctcgacattaacgcttgtctggtaccagcagaaacaatttGGGCT-CGACA-TTAATG-CTTGTC-----G--C-GGTACCAGCAAAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTT-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CGAGACATAAAT-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-AATATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---T-GGC-TCAAAACGAGAT-C-A--CC-GAC---T-AAA-T--GGA---ATCGAAGTT-CACTAAAA-TT-G--TT-TTACTT-T-CAATCTAATAT--GACT-------T--------------------T-TCC--GTTT-C-GGGCAACA-T-CGGCC-TTG-TCCT---A--C-A--CTTTTT
gi|13 : GGGCTGCGACA-TTAACG-CTTGTCCG---------GTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---T-A---T-ATTG-C-C-CGTACTTTACTTGTCCGACTGGAGAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CTAG-----AAG-TAT-ATA-T--AA-AT-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTGTC--GATG--A-TTT-T--ATC-GT-ATATCAA-AGTT-GGACAAAGGTTT---T-GCG-TCAAAACGAGAT-C-G--CC-GAC---T-AAA-T-CCGG---ATCGATGTT-CATTAAAA-CT-G--
gi|14 : TAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---T-GCA-TCAAAACGAGAT-C-A--CC-GAC---T-AAA-T--GGA---ATCGAAGTT-CACTAAAA-TT-G--TT-TTACTT-T-CAATCTAATAT--GACT-------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--CAA--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GCGAA-GT-CTT-GTCCAC-
gi|15 : TT-A---GAGGG--C--GCGA--A---A-CCTGTCG-TCGAT-AGAACATCTTGA--CTTTGCTTG-A
gi|16 : ATT-CAC-A--ACAAGAA---A-A---TTATTG-CAT-AGTACT-----TTTCCGACTGGAAAAATGA-T-TTTGTCA--CATT------TCAAAAA----------AA--GAaggagaggaagattgaagcaacaagcagtggttcagacaattttaaaaactgaaccgtattcactaaattcgctcatgtttccgtcgtttaaacgcagctgtgtacttaaatgtaggtcttaggtaatgatgtggattacgcgaattc
gi|16 : aaaaatAAAA---AAGAA--TA-CT---TTGTTATTATC--TATATAA-TTT-T--ATG-AA-ATCTCAA-AGTT-G-----AGACTG---T-GC-----AGATGAG---C-G--C--GAT---T-AAA-T-CGGG---ATCGAAATT-CATTTTAA-GT-G--TT-CTA-TT-T-CGATCTatactttgttattatctatataattttatgaaatctcaaagttgagactgtgcagatgagcgcgattaaatcgggatcgaaattcattttaagtgttctatttcgatct
gi|17 : aaaaatattcacaacaagaaaattattgcatagtacttttccgactggaaaaatgattttgtcacatttcaAGGGCT-CGACA-TTAACG-CTTGTCCACTT---------TCAGCAGAAA-CAATT-TAC-G-GACAAGTTCATACA---T-ATTGGC-C-AGTACT-----TGTCCGACTGGACAAGTGA-TA-TTTTTAGGC-TTAG----TTTAGAA----------AA--GATGTC-CT---------------CAAG-----AAG-TAT-ATA-T---A-AA-ATAAAA-CCAAGAAAGTATTT---TTGTCGTTATC--G-TG--ATTTT-A--ATC-
gi|18 : GGCT-CGACA-TTAACGGCTTG-CCACTT---------TCAGCAGAAAACAATT-TAC-GCGACAAGTT---C-A---T-ATTG-C-C-AGTACT-----TGT-CGACT-GACAAGTGA-TA-TTTTTAGG-ATTA-----TTTATAA----------AA--GA-GTCGCT---------------CAAGGA---GAG-TAT-ATA----AA-AA-ATAGAA-ACAAGAAAGTA-TT---
gi|19 : T-CTT-GTCCAC-CA-GA-A-GCGGATTGAGAAA-TT-ACA-GCC-GAGC--GC-AGTAAAAC-TTTT----------------------ATCGTCAGT-G-TTT-A---GAACA--C--GCG---A---AACCTTT-CCTCGAT-AGA-CATCTCGg
gi|2 : GGGCT--GACA-TTAATG-CTTGTCCGC-TGTAC-AGTACCAGCAAAAA-CAATTCTAC-G-GACAG--T---G-A---T-ATTT-T-T-AG---T-----TG----------CA------------TTAGG------------TAGAA----------AA--GATGA--TA---------------TAAG-----ACGCTAT-ATA-T--AA-AATACACAC-CCAAGAAAGTA-TT---TTGTTGTT-TCTGGATG--A-TTT-A--ATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---TGGCG-TCAAAACAAGATGCAA--CCGGAT---TAAAA-T-CGGG---AT-GAAGTT-CACTAAAATTT-GGTTT-TTACTT-TCCAATCTAT-AT--GC---------T--------------------T-TTC--GTTT-TGGGGCAACA-T-C-GCC-TTGTTCCTA--A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CAG---TC-TT-----TGAA-GT-CTT-GTCCAC-CTAGA-AGGCGGAATGAGAAA-TC-ACTGGCC-GAGC--GCTGGTAAAAC-TTTT-TT-CAGTGCATG-CTCA--CGGTCGTCAGTGG-TTT-A---GAAGG--C--GTGA--A---AACCTTTCC--TGAT-AGA-CATCTCAA--C-TTGCTTGAATTC-A-CCTT--TTGA-T--TTTTAGTGGAGAAC--G--GACA-CACAG--TGAT----AATAA----TTGT-TT-G--ACTGT---A-AAG----T--TTTTT-T----------TTTAT------TTT-----GTTT---CTG--AACAA--GG-CAG-TTCTGT-TTT--T-AATTT--GT--ACAGT--TAGCA--TT--ATAAA-AGTAATCAAC------ACA--ATTTC-----ATAGG-T--A----T--T-AAGATAAATTACTC-ATTAATATGT--T--TTTTAAGATG---TTTCTTTTGGACAAGC-AACAATT
gi|20 : T-G-TTT-A---GAGGG--C--GCGA--A---A-CCTTTCC-TCGAC-AGA-CATCTTGA--CTCTGCTTG-a
gi|21 : GGACAAGTGA-TATTTTTTAGGCATTA-----TATAGAA----------TA--GATGT--TT---------------CAAG-----AAG-TATAATA-T--AA-AA-ATAAAA-CCAAGAAAGggggaaaggaagaatgaagcaacaaacagtagttcagaaacttttgaaa
gi|22 : -T--A----T--T-A-----------TT-ATTAAAATGT--TTATTTTGAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
gi|23 : taaatcatgtactAGAGGTTG---T-GTG-T----ATGA--T-C-A--CT-GAT---T-AAA-T-CGGA---ATCAAAATT-CATT-ATG-TC-A--TT-CTACTT-T-CAgtg
gi|24 : -A-A-AAG----T--TTTTT-A----------T---T------TTT-----GCTTA--CTG--AACAACTGGGCAG-TTCTGT-TTT--T-AA-TTTGGT--ACAGT--T
gi|25 : -AAG----T--TTTT--A----------C---T------TTT-----GTTTA--CTG-AA-CAT--GGACTG-TTCTGT-TTT--T-AA-TTTGAT--ACAGT--TA-TA--
gi|26 : CAC-CA-GA-A-GCGGATTGAGAAA-TC-ACA-GTC-GAGC--GC-AGTAAAAC-TTT---------------------T-GTCGTCAGT-G-T
gi|27 : --A---AACCAT-CCCTCGGT-AGG-CATCTTGA--TTTTGCTTG-A
gi|28 : CAGGGCT-CAACA-TTAACG-TTTGTCCGATTGT-C-ggacaaggaagaattaa
gi|29 : taAGGGCT-CAACA-TTAACG-TTTGTCCGATTGT-
gi|3 : tatCAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGT-CCGGTACCAGCAAAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGATAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAT-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAATA-TT---TTGTCGTTATC--GATG--A-TTC-A--ATT-GT-ATCTCAA-AGT--GGACAAAGGCTG---T-GCG-TCAAAAGGAGAT-C-G--CC-GTC---T-AAA-T-CGGG---ATCAAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTC-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TT-TT----GTGAA-GG-CTT-GTCCAC-CA-GA-C-GCGGATTGAGAAA-TC-AT-------AGC--GC-AGTAAAACGTTTT-TT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCGA--AAATAACCTTTCCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAAGCCTTA-ATTA-TGATTTTAGGGGAG-AC--G--G--A-GAAAGT-TGATTATAAATAA---------TT-G--ACTGT-A-A-AAG----T--GTTTT-A----------T---T------TTT-----GTTTA--CTG-AAACAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AG-----------------------------ATA-G-T--A----G--T-A-----------TT-ATTAAAATGT--TTATTTTAAT-GT---TTTC-TTTGGACAAG--AA-AATTT
gi|30 : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTT
gi|4 : agAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGT-CCGGTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTA-T-----TGTCTGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAG-A----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATATT--AA-AA-ATAAAA-CCAAGAAAATA--T---TTGTCATTATC--GATG--A-TTT-AT-ATC-GT-ATCTCAA-AGTT-GGACAAAGGCTG---T-GCG-TCAAAAGGAGAA-C-G--CC-GTC---T-AAA-T-CGGG---ATCTAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-C-----------------AAA-TT-AT-------ATC--GC-AGTAAACCGTTTT-TT-CAG----TG-CGGA--T-TTCGTCAGT-G-TTT-A---TAAGG--C--GCGA--A---A--CCTTGCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCCTTAATTA-TGATTTTATGGGAG-GT--G--G--A-GAAAG--TGATTAAAAATGA----TTGT-TT-G--ACTGT-A-T-AGG----TTGTTTTT-A----------T---T------TTT-----GTTTA--CTG--AACAA--GGACAG-TTCGGT-TTT--T-AA-TTTGGT--ACAGT--TA-TA--TTG-ATA------------------------------------A-G-C--A----T--T-A-----------TT-ATTAAAATGT--TTATTTTATT-TG---TTTC-TTTGGCCAAGC-AA-
gi|5 : GGGCT-CGACA-TTAACG-CTTGTCCGTT---------ACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAAAAGATGTCTCAA--GAAGT--ATATATAAAAATATAACCAAG-----GTA-TAT-ATA-T--AA-AA-ATATAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATA--A-TTT-A--ATC-GT-ATCTCGA-AGTT-GTACAAAGTCTG---T-GCG-TCAAAACGAGAT------CC-AA----T-AAA-T-CGGG---ATCGAAGTT-CATT-AAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA--------------------------------------ATT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGT---------------------------T-CTT-ATCCAC-CT-GA-A-GTGGATTGAGAAA-TC-ACC-G-C-GAGC--GC-AGTAAAAC-TTTC-T----G----TG-CTTT--T-GTTGTCAG--G-TTT-A---GAAGG--C--GCG---A---AACCTT
gi|5 : AA-CCTT--AACAGCGATTTGAGGGGAG-AC--A--G--A-AACAG--TGATTA--AATAA----TTGT-TT-G--ACAGT-A-A-AAG----T--TTTTT-T----------T---TGTTT--TTT-----GTTTA--CTG-AA-CAA--GGACAG-TTCTGT-TTT--TTAATTTA-----ATAGT--TA-CA--TTA-ATAAA-AGT-ATCAA-------A-ACAAT--C-----ATA-G-T--A----T--T-A-----------TT-ATTAAAATGT--T-ATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTTaacagcgatttgaggggagacagaaacagtgattaaataattgtttgacagtaaaagtttttttttgttttttgtttactgaacaaggacagttctgttttttaatttaatagttacattaataaaagtatcaaaacaatcatagtattattattaaaatgttattttaattgtttctttggacaagcaaaattt
gi|6 : gggctcgacattaacgcttgtccgttaccagcagaaacaatttacggacaagttaatattgccagtacttgtccgactggacaagtgatattttttaggcattatgtagaaaagatgtctcaagaagtatatataaaaatataaccaaggtatatatataaaaatataaccaagaaagtattttgtcgttatcgataatttaatcgtatctcgaagttgtacaaagtctgtgcgtcaaaacgagatccaataaatcgggatcgaagttcattaaattgttctactttcaatctaaggaattcgggcaacatcgccttgtcctacactttttggcgccactacagttcttatccacctgaagtggattgagaaatcaccgcgagcgcagtaaaactttctgtgcttttgttgtcaggtttagaaggcgcgaCCGCTTGT-CCGGTACCAGCAGAAA-CAATT-TAC-G-GACA-GTT---A-A---T-ATGG-C-C-AGTA-T-----TGTCTGACTGGACAAGTGAATATTTTT-AGGCATT------TGTAGAA----------A---GATGT--CT---------------CAAG-----AAG-TAT-ATA-TTAAA-AA-ATAAAA-CCAAGAAAATA-TTGTTTTGTCATTTAC--GATG--A-TTT-A--ATC-GT-ATCTCAA--GTT-GGACAAAGGCTG---T-GCG-TCAAAAGGAGAA-C-G--CC-GTC---T-AAA-T-CGGG---ATCTAAG-T-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCTA--A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-C------------------AA-TC-A-------GAG---GCGAGTAAACCTTTTT-TT-CAG----TG-CTTA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCG-------AACCTTT-CCTCGAT-AGA-CATCTCG---CTTTGCTTG-ATTCAA-CCTT--ATTA-TGATTTTAGGGGAG-ATG-G--G--A-GAAAG--TGATTA-AAATAA----TTGT-TT-G--ACTGT-ATATAAG----TTGTTTTT-A----------T---TC-----TTT-----GTTTA--CTG--AACAA--GGACAG-TTCTGT-TTT--T-TAATTTGGT--ACAGTAGTT-CA--TTG-ATA------------------------------------A-G-C--A----T--T-A-----------TT-ATTAA-ATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATT
gi|7 : -ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTTTA--ATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---T-GCA-TCAAAACGAGAT-C-A--CC-GAC---T-AAA-T--GGA---ATCGAAGTT-CACTAAAA-TT-G--TT-TTACTT-T-CAATCTA--ATATGACT-------T--------------------T-TTC--GTTT-C-GG-CAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GCGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-AAGC--GC-TGTTAAAC-TTTT-TT-CAG----TG-CTCA--T-GTCATCAGT-G-TTT-A---GAAGG--C--GCG---A---AACCTTT-CCTCGAT-AGA-CATCTCAA--CTTTGCTTG-ATTCAA-CCC----TTA-TGATTTTAG-------T--G--G--A-GACAG--TGAT--TAAATAA------TTGTT-G--ACTGT-T-T-AAGTTT-T--TTTTT-A----------T---T------TTT-----GTTTA--CTG--AACAA--GGACAG-TTCTGT-TTT--T-AA-TTTGGT--ACAGT--TA-CA--TTA-TTAAA-AGT-ATCAACAC----A-A--A---C-----ATA-G-T--ATTAGT--T-A-----------TC-ATTAATATG---TTATTTTAAT-TG---CTTC-TTTGGACAAGC-AA-AATTTgt
gi|8 : AAGTT-CATTAAAA-TT-G--TT-TTTCTT-T-CAATCTA--AG--GA---------TATGGCCCTTTCTCTTCTCTTT-TTCTGGTTT-C-GGGCAACAAT-C-GC--TTG-TCCCCTAA--C-AACTTTTTTGGCTGC--CAGT----TTG---CAATCCTC-TTTTTGGTGAA-GT-TTT-GTCCAC-CT-GA-AAGCGGATTGAGAAC-TCTACC-GTC-GAGCTTGC-ACTAA--C-TTTTTTT-CAG----TG-CTCT--G-GTCGTCAGT-G-TTT-ATTCGAGGGTCC--GTGA--A---ACCGCTTTCCTCGATAAGA-CA-CTCGACTCTTTGCTTG-ATCCAC-CCTT--ATGA-T--TTTTTAGGGAG-AC--GCCG--A-GCCAGCCTGATTTTTAATGAGTTTTTTTGTT-G--ACTGT-A-A-AAGTTGTT--TTTCT-ATCTTTATTTTT---T------TTT-----GTTTA--CTG--AACAG--GGACAG-TTCTTTATTT--T-AATTTTGGT--AC-GT--TA-CAACATGTATAAAGAGT-A-CAA-------A-C--A---CATCATATA-G-T--A----T--TAA-----------TTGATTTAAATGTTATTCTTATATT-TGCTTTTTC-TTGCGACAAGC-Ag
gi|9 : TCGA-AGTT-GGACAAAGGCTG---T-GTGGTCAAAACGAGAT-C-GGGCC-GAC---T-AAA-TGCGGGGAGATCGAAGTTGCATTAAAA-TT-G--TT-CTATCT-T-CA-TCTA--AG--GAAATATGGCTT--------------------T-TTC--GTTTGC-GGGCAACA-T-C-GC--TTG-TCCT---AAAC-A--CTTTTTGGC-GCGACACAACAGTTGGGGCA----TC-TT----GTTAA-GTTCTT-ATCCAC-CT-GA-A-GCGGATTGAGAAA-TC-CCC-GCC-GAGT--GC-AGTAAACT-TTTT-TT-CAG----TG-CTCAAGT-GTTGTCCAT-G-TTTAA---GAAAGAAC--GC-ATTA---AACCTTT-CCTCGAT-AGA-CA---------TTTG------------------------GATTTTAGGGGAG-ACGTG--G--A-GACAG--TGAT--TAAATAA------TTGTTGG--ACTGT-A-A-ATT----T--TTTTTGG----------T---T------TTTTTTTGGTTTAAGCTG-AAGCAA--GGACA--TTCTGT-TTT--T--ATTTTGGTGAGCAGT--TG-CA--TTA-AT-AA-AGT-ATCAA-------A-A--AT--C-----ATA-GCT--A----T--T-A-----------TC-ATTAACATGT--TAATTTTATT-GG---TTTC-TTTGGCAAAGCAAA-AATTTtcaat
blockSeqs : G . G CTTGTCCG A C T C CATAC . T G A . C TTACT A C AACGCT AAGATGTCTC . CG ATATAAAAATATAAC ACATA C A T TA . T . T GTT TG TA T T AT . . . . . G G G GGG G . A C G GAG G T T GT . . C AT AT TATGGCCCTTTCTCTTCTCTT A TG G G A . G G T CTA AA A AC T GA GGG ATCC T TTTG G T . G TA G G . T TGGC . TT T G T G TGCA C AG G G T A TTC TC . ATT AAT A C A A T CT A AG CTTAATTA G A GT CC AC G CC TAT GTTTTTTTG G GA AT T TTGTT ATCTTTATTTTTT TTTTG AG A CT T A TC T T T GA AG G AC GT G TAAT CACAATTTC G C . TTAGT A AGATAAATTAC G C TA T A CTT T A C
blockSeqs : . . . CTTGTCCG . . . . G . . . . . C . . C AG . . C . GA . . . . . . . . . . . . . T . . . . . . . . AA . . . . . . . . . . . . . AT . AATATGGCTT . . . . . . . . . A . . . . . . G . . . . . . T . A . . CGC . . G G . . . . . . . . . . AA . A . A C . . T . . A TTAATTA G . G . . . T TAA TTTG . . A . TTTT GGTTTTT . . A . . . . . T T . . . . G . TAT ACACATCAT G . . T . . . T . T . . . . .
blockSeqs : . . . CTTGTCCG . . . . A . . . . . C . . C A . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . T . AATATGGAT . . . . . . . . . A . . . . . . . . . . . . . T . . . . AGC . . . T . . . . . . . . . . . . A . A C . . T . . A TTAACAG G . . . . . . TTT TTGT . . A . TTG TTTGTTT . . A . . . . . T T . . . . G . TAT AAAAATC . . . T . . . A . T . . . . .
blockSeqs : . . . CTGTACA . . . . T . . . . . C . . C A . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . ACTATGT . . . . . . . . . . . . . . . . . . . . . . . A . . . . AGT . . . . . . . . . . . . . . . . A . A C . . T . . A TTTTGA G . . . . . . TA TTGT . . A . TTG TTTTAT . . A . . . . . A T . . . . A . TAT AACAATC . . . G . . . A . T . . . . .
blockSeqs : . . . GCG . . . . A . . . . . C . . C A . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . CTT . . . . . . . . . . . . . . . . . . . . . . . A . . . . CGC . . . . . . . . . . . . . . . . A . A C . . T . . A TTATTA G . . . . . . TA TTGT . . A . T ATTC . . . . . . . . T T . . . . G . TAT CACAAAC . . . T . . . A . T . . . . .
blockSeqs : . . . CTT . . . . C . . . . . C . . C A . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . CTT . . . . . . . . . . . . . . . . . . . . . . . A . . . . CGT . . . . . . . . . . . . . . . . A . A C . . T . . A TTATGA G . . . . . . T TTGT . . A . T GGTT . . . . . . . . T A . . . . A . TA AAATC . . . T . . . A . T . . . . .
blockSeqs : . . . CTT . . . . G . . . . . C . . C A . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . CTT . . . . . . . . . . . . . . . . . . . . . . . T . . . . CGC . . . . . . . . . . . . . . . . A . A G . . T . . C CTTA . . . . . . . T TTG . . T . T ATT . . . . . . . . . T . . . . A . . . . . . T . . . T . T . . . . .
blockSeqs : . . . TG . . . . A . . . . . . . . C A . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . T . . . . CG . . . . . . . . . . . . . . . . A . A T . . T . . . . . . . . . . . T TTG . . A . T ACT . . . . . . . . . T . . . . . . . . . . . T . . . A . A . . . . .
blockSeqs : . . . TT . . . . A . . . . . . . . C A . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . T . . . . CG . . . . . . . . . . . . . . . . . . C . . . T . . . . . . . . . . . . . . . A . T ATT . . . . . . . . . T . . . . . . . . . . . T . . . C . . . . . .
blockSeqs : . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . A . . . T . . . . T ATT . . . . . . . . . T . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T ATT . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : CTTGCG*** *** ** *** G*** *** CTT*************************** ** ** TTATTA*** TA* TTGT***** A** ATT******************** ** AACAATC*************** ** T******
originalCons : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGT-C-GGTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGTT-GGACAAAGGCTG---T-GCG-TCAAAACGAGAT-C-G--CC-GAC---T-AAA-T-CGGG---ATCGAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GA---------T--------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGTAAAAC-TTTT-TT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCGA--A---AACCTTTCCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCTT--ATTA-TGATTTTAGGGGAG-AC--G--G--A-GACAG--TGATTATAAATAA----TTTTGTT-G--ACTGT-A-A-AAG----T--TTTTT-A----------T---T------TTT-----GTTTA--CTG-AAACAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AGT-ATCAA-------A-A--A---C-----ATA-G-T--A----T--T-A-----------TT-ATTAANATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
finalCons : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGCG---GTACCAGCAGAAA-CAATT-TAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAGGCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGTT-GGACAAAGGCTG---T-GCG-TCAAAACGAGAT-CG---CC-GAC---T-AAA-T-CGGG---ATCGAAGTT-CATTAAAA-TT-G--TT-CTACTT-T-CAATCTA--AG--GACTT---------------------------T-TTC--GTTT-C-GGGCAACA-T-C-GCC-TTG-TCCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGTAAAAC-TTTT-TT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCGA--A---AACCTTTCCCTCGAT-AGA-CATCTCGA--CTTTGCTTG-ATTCAA-CCTTATTA---TGATTTTAGGGGAG-AC--G--G--A-GACAG--TGATTA-AAATAATTGT-----TT-G--ACTGTA--A-AAG----T--TTTTTATT--------------------TTT-----GTTTA--CTG--AACAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AGT-ATCAAAACAATC---------------ATA-G-T--AT------T-A-----------TT-ATTAANATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
Alignments
lowQualScore : 33333333 11111 1111111111 222222222222222 11111 11 666666666666666666666666666666 11 1111 111 1 111111111 222 111111 1111111111111 111111 222222 1 11 33333333333333333333333 1111111 11111111111
lowQualScore : 3 3 3 44444444 3 3 3 77777 555 3 3 3 3 1 99999 3 44 00000 3333333333 44 77 000000000000000 22222 3 3 3 44 3 3 2 2 555 44 44 3 3 77 3 3 2 2 444 2 2 2 2 66 2 2 444 5 2 444 2 0 55 2 2 2 2 55 999999999999999999999999999999 44 3 3 3 3 3 3 3 555 00 3 44 6 44 555 0000 3 7777 3 3 3 2 77 3 6 3 3 9999 3 77 6 9 6 0 6666 3 44 3 2 2 2 555 77 33 222 444 8 2 0 2 2 1 44 3 44 888888888 2 4 99 55 55 4 99 333 4 111111 777 0 4 555 3 555 6666666666666 000000 555 000000 8888888888 44 77 3 44 3 3 44 3 3 1 44 44 3 55 00 0 4 33333333333333333333333 8 3 55 0000000 3 77777777777 3 4 999 3 666 3 4 4
lowQualScore : . . . ........ . . . ..... ... . . . . . ..... . .. ..... .......... .. .. ............... ..... . . . .. . . . . ... .. .. . . .. . . . . ... . . . . .. . . ... . . ... . . .. . . . . .. .............................. .. . . . . . . . ... .. . .. . .. ... .... . .... . . . . .. . . . . .... . .. . . . . .... . .. . . . . ... .. .. ... ... . . . . . . .. . .. ......... . . .. .. .. . .. ... . ...... ... . . ... . ... ............. ...... ... ...... .......... .. .. . .. . . .. . . . .. .. . .. .. . . ....................... . . .. ....... . ........... . . ... . ... . . .
lowQualScore : 1 1 1 33333333 6 3 3 66666 888 3 6 6 6 4 11111 1 22 88888 5555555555 22 99 888888888888888 99999 3 3 3 66 3 1 7 9 000 22 22 1 1 33 1 3 9 9 777 7 7 7 7 33 7 7 777 3 7 777 5 4 99 7 7 7 7 88 999999999999999999999999999999 22 1 1 1 1 1 1 1 444 44 1 22 7 66 888 4444 3 1111 3 1 1 9 66 1 2 1 1 5555 1 33 2 2 2 3 5555 1 22 1 9 9 9 000 99 99 222 777 9 6 7 9 9 5 66 3 77 222222222 5 0 55 55 55 0 55 666 0 555555 000 7 0 111 3 888 8888888888888 444444 888 000000 4444444444 66 99 3 66 3 3 66 3 6 3 66 66 6 00 44 8 0 22222222222222222222222 0 6 00 4444444 6 33333333333 6 5 444 6 444 6 0 4
consensus : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTTG--CGGTACCAGCAGAAA-CAATTTAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAG--GCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGTT-GGACAAAGGCTG---TG-CG-TCAAAACGAGAT-C-G--CC-G-AC---TAAA-T-CGGG---ATCGAAGTT-CATTAAAATT--GTT-CT-ACTT-TC-AATCTA--AGGA------------------C-------T---TTTTC--GTTT-CGGG-CAACA-T-C-GCC-TTGT-CCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGTAAAAC-TTTTTT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCGA--A---AACCTTTCCCTCGATA-GA-CATCTCGACT--TTGCTTG-ATTCAA-CCTT--ATTA-TGATTTTAGGGGAG-AC--G--G--A-GACAG--TGATT-A-A-AATAA------TTGT---TTG-ACTGT-A-A-AAG---T--T----------TTTT-A----T---T------TT----T-----GTTTA--CTG--AA-CAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AGT-ATCAA-A---ACA-A--TC--ATA-G-T--A----T--T-A-----------TT-ATTAANATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
Reference ( family-2238 ) : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTTG--CGGTACCAGCAGAAA-CAATTTAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAG--GCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGTT-GGACAAAGGCTG---TG-CG-TCAAAACGAGAT-C-G--CC-G-AC---TAAA-T-CGGG---ATCGAAGTT-CATTAAAATT--GTT-CT-ACTT-TC-AATCTA--AGGA------------------C-------T---TTTTC--GTTT-CGGG-CAACA-T-C-GCC-TTGT-CCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGTAAAAC-TTTTTT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCGA--A---AACCTTTCCCTCGATA-GA-CATCTCGACT--TTGCTTG-ATTCAA-CCTT--ATTA-TGATTTTAGGGGAG-AC--G--G--A-GACAG--TGATT-A-A-AATAA------TTGT---TTG-ACTGT-A-A-AAG---T--T----------TTTT-A----T---T------TT----T-----GTTTA--CTG--AA-CAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AGT-ATCAA-A---ACA-A--TC--ATA-G-T--A----T--T-A-----------TT-ATTAANATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
gi|1 : GCT-CGACAATTAACG-CTTATCCG--TA------ACCAGCAGAAA-CAATTTAC-G-GACACGTT---A-AGAAT-AGTG-C-CTAGTACT-----T-TCCAAC-GGACAAGTGC-TATTTTAT-G--GCATTA-----TGTAGAA----------AAAAGATGT--CT---------------CATT-----AAG-TAC-ATT-T--AAGAA-ATAAAAACCAAGAA-GTA-TT---TTGTCGTTATC--GATG--A-TT--A--ATCCGTTATCTCAACAGTTTGGACTAAGGATGGCTCG-CG-TCAAAATGAGAT-CCG--CCCG-GCACTTAAA-T-CGGG---ATCAAAGTT-CATTTAAATT--GTTTCT-ACTTATC-AATC-A--AGGAAATGTGG-----------C-------T---TTTTC--GTTT-CGGG-CAACA-TTC-GCC-TTGT-CCT---A--C-A--CTTTTTGGCTGC--CACTATAGTTG---CA----TC-TT----GTGAA-GT-CTTTGTCCAC-CT-GA-A-GCGGATTGAGAAAATC-CCC-GCCCGAGCC-GC-AGTAAAAC-TTTTTT-C------TG-CTCA--T-GTCGTCAGT-G-TTT-G---GAAGG--CCGGTGA--A---A-CCTTTACCCCGATA-GA-CATCTCGACT--TTGCTTG-ATTCAA-CCCTG-ATTT-TGATTTTAGGGGA--AC--G--G--A-GACAG--TGATT---A-AATGA------TTTTTTGTTG-ACTGTGA-A-AAG---T--T----------TTTT-T----T---TGTTAAATT----G-----GTCTA--CTGAAAA-CAA---GACAG-TTATG--TTT--T-AATTT--GT--ACAGT--TA-CA--TTA-ATAAA-AAT-ATCAACACTCACA-A--TC--ATA-G-TTAA----TTGT-G-----------TT-GTTAGC---T--CTATTGCAAT-GG---CTGC-TT
gi|10 : CGA-AGT--GGACAAAGGCT----TG-TG-TCAAAACGCGAT-C-G--CC-G-AC---TAAACT-CG-----ATCGA-GTT-CAATAAAATTT-GTT-CT-ACTT-CT-AA-CTA--AGAAA-----------------C-------TATGTTTTC--GTTT-CGG--CAAC--T-C-GCCGTTGT-CCT---A--C-A--CTTTTTGGC-GC--CACAACAGTTC---AA----TCTTT----GTTAAGGT-CTT-ATCCACGCT-GAGA-GCGGATTGAGAAA-T---CC-G-C-GAGT--GC-AGTAAAAC--TTTTT-CAG----TGCCTCA--T-GTTGTCATT-GTTTT-A---GAAGA--C--GCAA--A---A--CTTTCCCTCGATA-GA-CA--------------TTG-ATTTA----------------------GGGAG-AC--G--G--AGGACAG--TGATT---A-AATAT------TTGT---TGGAACTGT-A-A-A-----T--T----------TTTT-GGTTTT---T------TT----T-----GGTTA--CTG--AA-CAA--GGACAGTTTCTGT-TTTTCT-AA--TTGGT--ACAGT--TG-CA--TT--ATAAA-AGT-ATCAA-A---AAA-A--TC--ATAGG-T--A-------T-A-----------TC-ATTAACATG----TA-TTTAAT-TG---TTTC--TTGGAAAAGC-AA-AATT
gi|11 : cAGGGCT-CGACA-TTAACG-CTTGTC--------TGGTACCAGCAGAAA-CAATTTACTG-GACAAG-T---G-A---T-ATT
gi|11 : ACTGGACAAGTGA-TATTTTTTAG--G-ATTAACGCTTGTCT----------------GATGT--CT---------------CAAG-----AAG-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTTGTTATC--GATG--A-TTT-A--ATT-GT-ATCTCAA-AGTT-GGACAAAGGCTG---TG-CG-TCAAAACGAGAT-C-G--CC-G-AC---TAAA-T-CGGG---ATCGAAGTT-CATTAGAATT--GTT-CT-ACTT-TC-AATCTA--AGGA------------------AATATGGAT---TATTC--GTTT-CGGG-CTACA-T-C-ACC-TTGT-CCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-TTCCAC-AT-GA-A-GCGTATTGAGAAA-TC-ACC-GCC-GAGC--GC-AGGAAAAC-TTTTTTGCAG----TG-CTCA--T----GTCAAT-G-TTT-A---GAGTG--C--GCG---A---AACCTTT-CCTCGATA-GA-CATCTCGttttaggattaacgcttgtctgatgtctcaagaagtatatataaaaataaaaccaagaaagtattttgttgttatcgatgatttaattgtatctcaaagttggacaaaggctgtgcgtcaaaacgagatcgccgactaaatcgggatcgaagttcattagaattgttctactttcaatctaaggaaatatggattattcgtttcgggctacatcaccttgtcctacactttttggcgccactacagttgcatcttgtgaagtcttttccacatgaagcgtattgagaaatcaccgccgagcgcaggaaaacttttttgcagtgctcatgtcaatgtttagagtgcgcgaaacctttcctcgatagacatctcg
gi|12 : agggctcgacattaacgcttgtctggtaccagcagaaacaatttGGGCT-CGACA-TTAATG-CTTGTC-----G--CGGTACCAGCAAAAA-CAATTTAC-G-GACAAGTT---A-A---T-ATTT-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAG--GCATTA-----TGTAGAA----------AA--GATGT--CT---------------CGAGACATAAAT-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-AATATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---TG-GC-TCAAAACGAGAT-C-A--CC-G-AC---TAAA-T--GGA---ATCGAAGTT-CACTAAAATT--GTT-TT-ACTT-TC-AATCTAATATGA------------------C-------T---TTTCC--GTTT-CGGG-CAACA-T-CGGCC-TTGT-CCT---A--C-A--CTTTTT
gi|13 : GGGCTGCGACA-TTAACG-CTTGTCCG--------GTACCAGCAGAAA-CAATTTAC-G-GACAAGTT---T-A---T-ATTG-C-C-CGTACTTTACTTGTCCGACTGGAGAAGTGA-TATTTTTTAG--GCATTA-----TGTAGAA----------AA--GATGT--CT---------------CTAG-----AAG-TAT-ATA-T--AA-AT-ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTGTC--GATG--A-TTT-T--ATC-GT-ATATCAA-AGTT-GGACAAAGGTTT---TG-CG-TCAAAACGAGAT-C-G--CC-G-AC---TAAA-T-CCGG---ATCGATGTT-CATTAAAACT--G
gi|14 : TAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTT-A--ATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---TG-CA-TCAAAACGAGAT-C-A--CC-G-AC---TAAA-T--GGA---ATCGAAGTT-CACTAAAATT--GTT-TT-ACTT-TC-AATCTAATATGA------------------C-------T---TTTTC--GTTT-CGGG-CAACA-T-C-GCC-TTGT-CCT---A--CAA--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GCGAA-GT-CTT-GTCCAC-
gi|15 : TT-A---GAGGG--C--GCGA--A---A-CCTGTCG-TCGATA-GAACATCTTGACT--TTGCTTG-A
gi|16 : ATTCAC-A--ACAAGAA---A-A---TTATTG-CAT-AGTACT-----TTTCCGACTGGAAAAATGA-T-TTTGTCA----CATT------TCAAAAA----------AA--GAaggagaggaagattgaagcaacaagcagtggttcagacaattttaaaaactgaaccgtattcactaaattcgctcatgtttccgtcgtttaaacgcagctgtgtacttaaatgtaggtcttaggtaatgatgtggattacgcgaattc
gi|16 : aaaaatAAAA---AAGAA--TA-CT---TTGTTATTATC--TATATAA-TTT-T--ATG-AA-ATCTCAA-AGTT-G-----AGACTG---TG-C-----AGATGAG---C-G--C--G-AT---TAAA-T-CGGG---ATCGAAATT-CATTTTAAGT--GTT-CT-A-TT-TC-GATCTatactttgttattatctatataattttatgaaatctcaaagttgagactgtgcagatgagcgcgattaaatcgggatcgaaattcattttaagtgttctatttcgatct
gi|17 : aaaaatattcacaacaagaaaattattgcatagtacttttccgactggaaaaatgattttgtcacatttcaAGGGCT-CGACA-TTAACG-CTTGTCCACTT--------TCAGCAGAAA-CAATTTAC-G-GACAAGTTCATACA---T-ATTGGC-C-AGTACT-----TGTCCGACTGGACAAGTGA-TA-TTTTTAG--GC-TTAG----TTTAGAA----------AA--GATGTC-CT---------------CAAG-----AAG-TAT-ATA-T---A-AA-ATAAAA-CCAAGAAAGTATTT---TTGTCGTTATC--G-TG--ATTTT-A--ATC-
gi|18 : GGCT-CGACA-TTAACGGCTTG-CCACTT--------TCAGCAGAAAACAATTTAC-GCGACAAGTT---C-A---T-ATTG-C-C-AGTACT-----TGT-CGACT-GACAAGTGA-TA-TTTTTAG--G-ATTA-----TTTATAA----------AA--GA-GTCGCT---------------CAAGGA---GAG-TAT-ATA----AA-AA-ATAGAA-ACAAGAAAGTA-TT---
gi|19 : T-CTT-GTCCAC-CA-GA-A-GCGGATTGAGAAA-TT-ACA-GCC-GAGC--GC-AGTAAAAC-TTTT---------------------ATCGTCAGT-G-TTT-A---GAACA--C--GCG---A---AACCTTT-CCTCGATA-GA-CATCTCGg
gi|2 : GGGCT--GACA-TTAATG-CTTGTCC----G--CTGTAC-AGTACCAG-CAA------A-AACAA------------------------------------TTCTAC-GGACA-GTGA-TATTTTT-AGTTGCATTA-----GGTAGAA----------AA--GATGA--TA---------------TAAG-----ACGCTAT-ATA-T--AA-AATACACAC-CCAAGAAAGTA-TT---TTGTTGTT-TCTGGATG--A-TTT-A--ATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---TGGCG-TCAAAACAAGATGC-AA-CC-GGAT---TAAAAT-CGGG---AT-GAAGTT-CACTAAAATTTGGTT-TTTACTT-TCCAATCTAT-ATG---------------------------C---TTTTC--GTTT-TGGGGCAACA-T-C-GCC-TTGTTCCT---AA-C-A--CTTTTTGGC-GC--CACTACAGTTG---CAG---TC-TT-----TGAA-GT-CTT-GTCCAC-CTAGA-AGGCGGAATGAGAAA-TC-ACTGGCC-GAGC--GCTGGTAAAAC-TTTTTT-CAGTGCATG-CTCA--CGGTCGTCAGTGG-TTT-A---GAAGG--C--GTGA--A---AACCTTTCC--TGATA-GA-CATCTCAAC---TTGCTTGAATTC-A-CCTT--TTGA-T--TTTTAGTGGAGAAC--G--GACA-CACAG--TGAT------AATAA------TTGT---TTG-ACTGT---A-AAG---T--T----------TTTT-T----TTTAT------TT----T-----GTTT---CTG--AA-CAA--GG-CAG-TTCTGT-TTT--T-AATTT--GT--ACAGT--TAGCA--TT--ATAAA-AGTAATCAA-C---ACA-ATTTC--ATAGG-T--A----T--T-AAGATAAATTACTC-ATTAATATGT--T--TTTTAAGATG---TTTCTTTTGGACAAGC-AACAATT
gi|20 : T-G-TTT-A---GAGGG--C--GCGA--A---A-CCTTTCC-TCGACA-GA-CATCTTGACT--CTGCTTG-a
gi|21 : GGACAAGTGA-TATTTTTTAG--GCATTA-----TATAGAA----------TA--GATGT--TT---------------CAAG-----AAG-TATAATA-T--AA-AA-ATAAAA-CCAAGAAAGggggaaaggaagaatgaagcaacaaacagtagttcagaaacttttgaaa
gi|22 : -T--A----T--T-A-----------TT-ATTAAAATGT--TTATTTTGAT-TG---TTTC-TTTGGACAAGC-AA-AATTT
gi|23 : taaatcatgtactAGAGGTTG---TG-TG-T----ATGA--T-C-A--CT-G-AT---TAAA-T-CGGA---ATCAAAATT-CATT-ATGTC--ATT-CT-ACTT-TC-Agtg
gi|24 : -A-A-AAG---T--T----------TTTT-A----T---T------TT----T-----GCTTA--CTG--AA-CAACTGGGCAG-TTCTGT-TTT--T-AA-TTTGGT--ACAGT--T
gi|25 : -AAG---T--T----------TTT--A----C---T------TT----T-----GTTTA--CTG--AA-CAT--GGACTG-TTCTGT-TTT--T-AA-TTTGAT--ACAGT--TA-TA--
gi|26 : CAC-CA-GA-A-GCGGATTGAGAAA-TC-ACA-GTC-GAGC--GC-AGTAAAAC-TTT--------------------T-GTCGTCAGT-G-T
gi|27 : --A---AACCAT-CCCTCGGTA-GG-CATCTTGATT--TTGCTTG-A
gi|28 : CAGGGCT-CAACA-TTAACG-TTTGTCCGATTG--ggacaaggaagaattaa
gi|29 : taAGGGCT-CAACA-TTAACG-TTTGTCCGATTG--tc
gi|3 : tatCAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGTCCGGTACCAGCAAAAA-CAATTTAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGATAAGTGA-TATTTTTTAG--GCATTA-----TGTAGAA----------AA--GATGT--CT---------------CAAG-----AAT-TAT-ATA-T--AA-AA-ATAAAA-CCAAGAAAATA-TT---TTGTCGTTATC--GATG--A-TTC-A--ATT-GT-ATCTCAA-AG-T-GGACAAAGGCTG---TG-CG-TCAAAAGGAGAT-C-G--CC-G-TC---TAAA-T-CGGG---ATCAAAGTT-CATTAAAATT--GTT-CT-ACTT-TC-AATCTA--AGGA------------------------------TTTTC--GTTC-CGGG-CAACA-T-C-GCC-TTGT-CCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TT-TT----GTGAA-GG-CTT-GTCCAC-CA-GA-C-GCGGATTGAGAAA-TC-AT-------AGC--GC-AGTAAAACGTTTTTT-CAG----TG-CTCA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCGA--AAATAACCTTTCCCTCGATA-GA-CATCTCGACT--TTGCTTG-ATTCAAGCCTTA-ATTA-TGATTTTAGGGGAG-AC--G--G--A-GAAAGT-TGATT-ATA-AATAA-------------TTG-ACTGT-A-A-AAG---T--G----------TTTT-A----T---T------TT----T-----GTTTA--CTGA-AA-CAA--GGACAG-TTCTGT-TTT--T-AATTTTGGT--ACAGT--TA-CA--TTG-ATAAA-AG-----------------------ATA-G-T--A----G--T-A-----------TT-ATTAAAATGT--TTATTTTAAT-GT---TTTC-TTTGGACAAG--AA-AATTTt
gi|30 : CAGGGCT-CGACA-TTAACG-CTTGTCCGCTT
gi|4 : agAGGGCT-CGACA-TTAACG-CTTGTCCGCTTGTCCGGTACCAGCAGAAA-CAATTTAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTA-T-----TGTCTGACTGGACAAGTGA-TATTTTTTAG--GCATTA-----TGTAG-A----------AA--GATGT--CT---------------CAAG-----AAG-TAT-ATATT--AA-AA-ATAAAA-CCAAGAAAATA--T---TTGTCATTATC--GATG--A-TTT-AT-ATC-GT-ATCTCAA-AGTT-GGACAAAGGCTG---TG-CG-TCAAAAGGAGAA-C-G--CC-G-TC---TAAA-T-CGGG---ATCTAAGTT-CATTAAAATT--GTT-CT-ACTT-TC-AATCTA--AGGA------------------------------TTTTC--GTTT-CGGG-CAACA-T-C-GCC-TTGT-CCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-C-----------------AAA-TT-AT-------ATC--GC-AGTAAACCGTTTTTT-CAG----TG-CGGA--T-TTCGTCAGT-G-TTT-A---TAAGG--C--GCGA--A---A--CCTTGCCTCGATA-GA-CATCTCGACT--TTGCTTG-ATTCAA-CCCTTAATTA-TGATTTTATGGGAG-GT--G--G--A-GAAAG--TGATTAA-A-AATGA------TTGT---TTG-ACTGT-A-T-AGG---TTGT----------TTTT-A----T---T------TT----T-----GTTTA--CTG--AA-CAA--GGACAG-TTCGGT-TTT--T-AA-TTTGGT--ACAGT--TA-TA--TTG-ATA------------------------------A-G-C--A----T--T-A-----------TT-ATTAAAATGT--TTATTTTATT-TG---TTTC-TTTGGCCAAGC-AA-
gi|5 : GGGCT-CGACA-TTAACG-CTTGTCCGTT--------ACCAGCAGAAA-CAATTTAC-G-GACAAGTT---A-A---T-ATTG-C-C-AGTACT-----TGTCCGACTGGACAAGTGA-TATTTTTTAG--GCATTA-----TGTAGAAAAGATGTCTCAA--GAAGT--ATATATAAAAATATAACCAAG-----GTA-TAT-ATA-T--AA-AA-ATATAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATA--A-TTT-A--ATC-GT-ATCTCGA-AGTT-GTACAAAGTCTG---TG-CG-TCAAAACGAGAT------CC-A-A----TAAA-T-CGGG---ATCGAAGTT-CATT-AAATT--GTT-CT-ACTT-TC-AATCTA--AGGA------------------A--------------------TT-CGGG-CAACA-T-C-GCC-TTGT-CCT---A--C-A--CTTTTTGGC-GC--CACTACAGT---------------------------T-CTT-ATCCAC-CT-GA-A-GTGGATTGAGAAA-TC-ACC-G-C-GAGC--GC-AGTAAAAC-TTTCT----G----TG-CTTT--T-GTTGTCAG--G-TTT-A---GAAGG--C--GCG---A---AACCTT
gi|5 : AA-CCTT--AACAGCGATTTGAGGGGAG-AC--A--G--A-AACAG--TGATT-A-A-A-TAA------TTGT---TTG-ACAGT-A-A-AAG---T--T----------TTTT-T----T---TGTTT--TT----T-----GTTTA--CTG--AA-CAA--GGACAG-TTCTGT-TTT--TTAATTTA-----ATAGT--TA-CA--TTA-ATAAA-AGT-ATCAA-A---ACA-A--TC--ATA-G-T--A----T--T-A-----------TT-ATTAAAATG---TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATTTaacagcgatttgaggggagacagaaacagtgattaaataattgtttgacagtaaaagtttttttttgttttttgtttactgaacaaggacagttctgttttttaatttaatagttacattaataaaagtatcaaaacaatcatagtattattattaaaatgttattttaattgtttctttggacaagcaaaattt
gi|6 : gggctcgacattaacgcttgtccgttaccagcagaaacaatttacggacaagttaatattgccagtacttgtccgactggacaagtgatattttttaggcattatgtagaaaagatgtctcaagaagtatatataaaaatataaccaaggtatatatataaaaatataaccaagaaagtattttgtcgttatcgataatttaatcgtatctcgaagttgtacaaagtctgtgcgtcaaaacgagatccaataaatcgggatcgaagttcattaaattgttctactttcaatctaaggaattcgggcaacatcgccttgtcctacactttttggcgccactacagttcttatccacctgaagtggattgagaaatcaccgcgagcgcagtaaaactttctgtgcttttgttgtcaggtttagaaggcgcgaCCGCTTGTCCGGTACCAGCAGAAA-CAATTTAC-G-GACA-GTT---A-A---T-ATGG-C-C-AGTA-T-----TGTCTGACTGGACAAGTGAATATTTTT-AG--GCATT------TGTAGAA----------A---GATGT--CT---------------CAAG-----AAG-TAT-ATA-TTAAA-AA-ATAAAA-CCAAGAAAATA-TTGTTTTGTCATTTAC--GATG--A-TTT-A--ATC-GT-ATCTCAA--GTT-GGACAAAGGCTG---TG-CG-TCAAAAGGAGAA-C-G--CC-G-TC---TAAA-T-CGGG---ATCTAAGT--CATTAAAATT--GTT-CT-ACTT-TC-AATCTA--AGGA------------------------------TTTTC--GTTT-CGGG-CAACA-T-C-GCC-TTGT-CCT---AA-C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GTGAA-GT-CTT-GTCCAC-C------------------AA-TC-A-------GAG---GCGAGTAAACCTTTTTTT-CAG----TG-CTTA--T-GTCGTCAGT-G-TTT-A---GAAGG--C--GCG-------AACCTTT-CCTCGATA-GA-CATCTCG-CT--TTGCTTG-ATTCAA-CCTT--ATTA-TGATTTTAGGGGAG-ATG-G--G--A-GAAAG--TGATT-A-A-AATAA------TTGT---TTG-ACTGT-ATATAAG---TTGT----------TTTT-A----T---TC-----TT----T-----GTTTA--CTG--AA-CAA--GGACAG-TTCTGT-TTT--T-TAATTTGGT--ACAGTAGTT-CA--TTG-ATA------------------------------A-G-C--A----T--T-A-----------TT-ATTAA-ATGT--TTATTTTAAT-TG---TTTC-TTTGGACAAGC-AA-AATT
gi|7 : -ATAAAA-CCAAGAAAGTA-TT---TTGTCGTTATC--GATG--A-TTTTA--ATC-GT-ATCTCAA-AGCT-GGACAAATGTTG---TG-CA-TCAAAACGAGAT-C-A--CC-G-AC---TAAA-T--GGA---ATCGAAGTT-CACTAAAATT--GTT-TT-ACTT-TC-AATCTAATATGA------------------C-------T---TTTTC--GTTT-C-GG-CAACA-T-C-GCC-TTGT-CCT---A--C-A--CTTTTTGGC-GC--CACTACAGTTG---CA----TC-TT----GCGAA-GT-CTT-GTCCAC-CT-GA-A-GCGGATTGAGAAA-TC-ACC-GCC-AAGC--GC-TGTTAAAC-TTTTTT-CAG----TG-CTCA--T-GTCATCAGT-G-TTT-A---GAAGG--C--GCG---A---AACCTTT-CCTCGATA-GA-CATCTCAACT--TTGCTTG-ATTCAA-CCC----TTA-TGATTTTAG-------T--G--G--A-GACAG--TGATT---A-AATAA------TTG----TTG-ACTGT-T-T-AAGTTTT--T----------TTTT-A----T---T------TT----T-----GTTTA--CTG--AA-CAA--GGACAG-TTCTGT-TTT--T-AA-TTTGGT--ACAGT--TA-CA--TTA-TTAAA-AGT-ATCAA-C---ACA-A--AC--ATA-G-T--ATTAGT--T-A-----------TC-ATTAATATG---TTATTTTAAT-TG---CTTC-TTTGGACAAGC-AA-AATTTgt
gi|8 : AAGTT-CATTAAAATT--GTT-TT-TCTT-TC-AATCTA--AGGATATGGCCCTTTCTCTTCTC-------T---TTTTCTGGTTT-CGGG-CAACAAT-C-GC--TTGT-CCCCTAA--C-AACTTTTTTGGCTGC--CAGT----TTG---CAATCCTC-TTTTTGGTGAA-GT-TTT-GTCCAC-CT-GA-AAGCGGATTGAGAAC-TCTACC-GTC-GAGCTTGC-ACTAA--C-TTTTTTTCAG----TG-CTCT--G-GTCGTCAGT-G-TTT-ATTCGAGGGTCC--GTGA--A---ACCGCTTTCCTCGATAAGA-CA-CTCGACTCTTTGCTTG-ATCCAC-CCTT--ATGA-T--TTTTTAGGGAG-AC--GCCG--A-GCCAGCCTGATT-T-TTAATGAGTTTTTTTGT---T-G-ACTGT-A-A-AAG---T--TGTTTTTCTATCTTT-A----T---T------TTTTTTT-----GTTTA--CTG--AA-CAG--GGACAG-TTCTTTATTT--T-AATTTTGGT--AC-GT--TA-CAACATGTATAAAGAGT-AC--A-A---ACACA--TCATATA-G-T--A----T--TAA-----------TTGATTTAAATGTTATTCTTATATT-TGCTTTTTC-TTGCGACAAGC-Ag
gi|9 : TCGA-AGTT-GGACAAAGGCTG---TG-TGGTCAAAACGAGAT-C-GGGCC-G-AC---TAAA-TGCGGGGAGATCGAAGTTGCATTAAAATT--GTT-CT-ATCT-TC-A-TCTA--AGGAAATATGG-----------C-------T---TTTTC--GTTTGCGGG-CAACA-T-C-GC--TTGT-CCT---AAAC-A--CTTTTTGGC-GCGACACAACAGTTGGGGCA----TC-TT----GTTAA-GTTCTT-ATCCAC-CT-GA-A-GCGGATTGAGAAA-TC-CCC-GCC-GAGT--GC-AGTAAACT-TTTTTT-CAG----TG-CTCAAGT-GTTGTCCAT-G-TTTAA---GAAAGAAC--GC-ATTA---AACCTTT-CCTCGATA-GA-CA-------T--TTG------------------------GATTTTAGGGGAG-ACGTG--G--A-GACAG--TGATT---A-AATAA------TTGT---TGG-ACTGT-A-A-ATT---T--T----------TTTTGG----T---T------TT----TTTTTGGTTTAAGCTG--AAGCAA--GGACA--TTCTGT-TTT--T--ATTTTGGTGAGCAGT--TG-CA--TTA-AT-AA-AGT-ATCAA-A-----A-A--TC--ATA-GCT--A----T--T-A-----------TC-ATTAACATGT--TAATTTTATT-GG---TTTC-TTTGGCAAAGCAAA-AATTTtcaat