lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 3 333 44444444444444444444444444444444444444444444444444 22222222 66666666666666666666666666666666666666666666666666 2 2222 8888888888888888888888888888888888888 3 222222222222 2222222 1 11111111111 222 44 3 11 3333333333333 2222222222 1 11 44444444 666666666666666 22 2 111 444444444 0000000000000000000000000000000000 3333333 4 1111 222222 333 44444444 6666666666666666666666666666666666666666666666666666 11 2 5555555555555555555555555555 22222 1111 22 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1111 11 1 1 2222222 111 2 11 22222 22222 111 3333333 22 11 2222 1 88888888888888888888888 111 9999999999999999999999999 3333333333 11111 11
lowQualScore : 5 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 0 0 888 66 3 5 66 5 66 5 5 999 0 2 55555555555555555555555555555555555555555555555555 5 99999999 6 1 88888888888888888888888888888888888888888888888888 4 3333 6666666666666666666666666666666666666 6 3 0 999999999999 3333333 5 1 99999999999 1 77 555 6 7 33 6 5 5 5 5 66 8888888888888 5 5555555555 0 33 5 77777777 333333333333333 5 22 0 0 3 66 8 0 000 222222222 4 5555555555555555555555555555555555 5 5 6666666 0 5555 5 77 777777 333 1 99999999 4 99 99 2222222222222222222222222222222222222222222222222222 8 8 33 6 6 6 6666666666666666666666666666 99999 0000 5 5 99 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333 6 6 8 2 66 3 3 4444444 8 8 6 777 2 0 2 3 1 3 3 8 11 1 00000 00000 77 77 3 444 999999 5 1 0 7 0000000 6 33 6 00 6 8 8 7 6 2 6666 8 0 33333333333333333333333 3 2 9 8 222 4 3333333333333333333333333 6 8 6 5555555555 6 0 55 11111 11 4 55
lowQualScore : . ................................................................................................ .. . . ... .. . . .. . .. . . ... . . .................................................. . ........ . . .................................................. . .... ..................................... . . . ............ ....... . . ........... . .. ... . . .. . . . . . .. ............. . .......... . .. . ........ ............... . .. . . . .. . . ... ......... . .................................. . . ....... . .... . .. ...... ... . ........ . .. .. .................................................... . . .. . . . ............................ ..... .... . . .. ..................................................................................................................... .... . . . . .. . . ....... . . . ... . . . . . . . . .. . ..... ..... .. .. . ... ...... . . . . ....... . .. . .. . . . . . . .... . . ....................... . . . . ... . ......................... . . . .......... . . .. ..... .. . ..
lowQualScore : 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 44 8 9 888 99 8 0 99 0 99 0 0 444 1 2 33333333333333333333333333333333333333333333333333 7 00000000 7 0 00000000000000000000000000000000000000000000000000 0 4444 0000000000000000000000000000000000000 7 3 7 000000000000 7777777 7 4 11111111111 4 99 777 7 8 33 7 6 7 1 0 99 2222222222222 7 3333333333 0 55 0 44444444 000000000000000 0 55 2 4 3 22 4 6 000 333333333 0 1111111111111111111111111111111111 7 7 4444444 0 3333 7 44 555555 777 7 33333333 8 55 22 3333333333333333333333333333333333333333333333333333 0 0 44 4 7 7 5555555555555555555555555555 44444 6666 0 0 22 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0000 0 4 0 2 99 5 3 0000000 0 0 0 888 2 8 0 0 6 2 5 0 00 0 00000 88888 00 00 2 222 333333 6 4 8 5 6666666 7 00 7 88 7 0 0 0 0 5 8888 8 5 00000000000000000000000 2 0 5 8 555 2 8888888888888888888888888 0 0 8 0000000000 6 8 22 00000 00 0 00
consensus : CCTTTGC-TTCG-CGCT-TGTAAA--AA--TT-----GTT-GCC-TCGTTTGGAAGT-C--TT-GCA-GAGAAC-AC-ATCGCGTGTC-TA-TCTA---CT---GCA-GCGGCA-GC-GACTTTATT---T--T-GGTC-TTTT--GATCC-GT--CT-GT-A-TTAAATATCAATCG-TAGAATGT-TT----TGGCCTG--TTTTNT--TTC---G---AAGA-T-TTTT--G-TT--GA-AACAGCG-GG-ATT--TGTTTCAGATTTCT---TATA-TT----CA-GAA-AGTGA-TGTGTCTACCTTAGG-GTT-TTAT-TAA--AT--------TTC---C-ATG--GCGGGTA-TTTCAGAACA-A-GT----TGTGGTGTTT------T-ACAA-TA-------TC--CAAAGGTAAGTCAGAATCCCGTA--TGTG-T-TTTT-AACTCGTAAACCG-ATTGATTTNA-TACA-TTTCT-TG--TTTTGT--CA-TA-GCATCTTC-A-AA-CT-GC-G-ATGGAA-GA-CGCAGTC-CAAATGCAGGGT-TGTCCG-TGT-TAAGC-TTTTAATT--AAGTATTATATTGTAAAAGGAGTTTTATTCTA---CGTAGA--TCGA-G-AGGTGGTTCGTT---TGC-CTC-A-CAT-ACAAA-ACTGTC----TACAG-G-AGAAGTTCG-AAAGCTC-CTGTG--CAC-AGTCG-AAGACCTT-GGTGATGG--ATTGCATCGAGAGCTTT----TAATATATGAT--GTTCT-T-GCCGCT-CC-AT-AT-AC------T--ATACAAGCCGT-TAGTCCTA-GTTT-AGA-CCG-GATTTAAAGAGC-GA-TACAG---GTGG---------------A-G-AGAGTA-----TT----TTTA-TC-TGC-TCCCCATTTGG--TG-TTCGCT-ACNACTGTT-TTAT-TA-------T--CA-AAGAN-CCTTTGN-ACATTTCTCTTT-G-AGC-A-TTG-CTATA-AT--GA-GTTATG-AACGAAAG----AAAAGTTC--A-TTATCGAAAATGACACC-TAAGAAC-TTAACCTC-TTT-ACAACTTTAATT-GGAG-TCCCATCTAATGCCAGCTGCGGATCATCGTGGTGTTTCCGTTTAGAACAGAAATGCACGCACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAA-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAANAAAGTC--ATCAACATATA--GACTTCCATGGAAGTCGT-----TTT-TTA-TAC-TTTAGCCAGAATGTTTATTTT-TATACTA-GATAATGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATTCTTGTTCGAAATTGTC-GA----GTTGATCCTAAGCATACATTGACATTTCTATTAC-CNAAGAAAT--T-GGATG--------AANT-CTGGTAGA-TGCCCTT----------TGTGGCCAATATAATAAAGATC--TTTTAAGANACNNTATTTC
Reference ( gi|1 ) : CCTTTGC-TTCG-CGCTATGTAAA--AAGCTT-----GTT-GCTATCGTTTGGAAA--C--TA-GCA-GAGAACTACGATCATATGTCGTAGTCTA---CTA--GCAAGCGGCA-GCAGACTTTATT---T--TCGGTC-TTTT--GATCC-GT--CT-GT-AATTAAATATTAATGC-TAGAATGTATT----TGGCCTG--TTATTC--TTC---G---AA---T-TTTT--G-TT--AA-AACAGCG-G--ATTGATGTT-CAGAATT-T---TATA-T-----CA-AAG-A-TGAATGT-TCTACCTTAAG-GTTCTTATATAA--AT--------TTC---C-ATG--GCAGGTA-TT-CAGAGCA-A-GT----TGTGGTGTTC------T-ACAA-TA-------TT--CAAAGGCAAGTCAGAATCCTGTA--TGTG---TTTT-AACTCGTAA--CA-ATTGATTTAA-TACACTTTCT-TG--TTTTGT--CA-TAGGTATCTTC-A-A--CT-GC-G-ATGGAA-GA-CGCAGT--AACA-GCAGGGT-TCTGCA-TGT-TAAGC-TTTTAATT--AAGTATTATATTGCAAAAGGAGTTTTATTCTA---CGTAGA--TCAATA-AGGTGGTTCGTCGTATAC-CTC-A-CAT-TCAAA-ACTGTC--CATACAG-G-AGATTTCTG-AAAGCTCACTGAG--CAC-AGTCA-AAGACATT-GGTGATGGA-ATTGCATCGAGAGCTCT--TGTAATGTATGAT--GTTCTGT-GCAG-T-CC-AT-AT-AC------T--ATACAAGCCGTTTAGTCCTA-GTTT-AGA-CCT-GATCCAAAGAGC-GA-TAC-G---GTGG---------------A-G-AGAGTA----TTT----TTTA-TC-TGCATCCCCATTTGGCTTG-TT-GCT-ACCACTGTT-TTAT-TC-------T--CA-AAGAG-C--TTGA-ACATTTATC-TT-G-AGC-A-TGGCCTATA-AT--GA-GTTATG-AACGAAAGATTTAAAAGTTT--A-TTATCGAAAATGACACC-TAAAAAA-TTAATCTC-TTT-ACAACTTTAATT-GGAG-CCCCATCCAAAGTCAATTGTGGATCATCGTGATGTTTCCGTTTAGAGCAGAAATGCACACACGCAGTTTAAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAGGTCGT-----TTT-TTAGAAC-TTCGGCCAGACTGTTTATTTT-TATACTA-AATAATGTGACCGATAAAATACTTCCTTGAGGAACGCCCATTTCTTGTTCGAAATTGTCTGAAAGTGTTGAACCTAAGCGTACATTGAAATGTCTATTAC-TTAGGAAATTCT-GAATG--------AAGT-TTGGCAGA-TGTCCTT----------TAAGGCCAATATTGTGAAGATC--TTTTAAGATACCGTATTTCC
gi|10 : CCTTTGC-TTCG--GCT--GTAAA--A---TT-----GTT-GCCG-CGTTGAGCAAGTC--T--GCAAGAGAA--------ACATGC--------------------AGCGGCAAGC-GACTTTATTAAAT--T-GGTC-TTTTTCGATCCCGTACCT-GT-A-TTAAGT-TCAATCG-TAGAATGT--T----TGGTCTG--TTTTTTATTTC---G---AAGA-T-GTTT--GGTT--GA-AAAAGCG-GG-ATT--TGTTTCAGATTTCT---TATA-TTTCAGCA-AAGGA-TGA-TGTGTCTACCTTA-G-GTT-TTAT-TAA---T--------ATC---C-ATG--GCGGTTA-TTTCAGAGCATA-AT----TG-GGTGTTT------TTACAAATA-------TT--CAAAG-TAAGTCAGAAGCCCGTA--TGT
gi|16 : CCTTTGC-TTTG--GCTGTATAAG--TAG---------TT-GCC-TCGTTTGGAAGT-C--TT-GTA-GAGAA-TAC----AT-TGT--TAG-CTATTTCT---GCA-GCAGCA-GC-GACTTTATT---T--T-GGTC-TTTT--GATCC-AT--CT-GT-A--TAAATATTAATCG-TAGAATG--TT----TGGCCTGCTTTAT----TTC---G---AATATT-TTTT--GTTT--GA-AAAAGTG-A--AT
gi|22 : CTTTGCCTTCG--GCC-TGGAAA--AA---T-----GTT-GCC-TCATTTGGAAG--C--TT-ACC-GAGAAC-------ACATGTTCTA--TTA---CTT--GCA-GCGGCA-GC-GACTTTATT---T--T-GGTCTTTTT--GATCC-GT--CT-GT-ATTAAAATATCAATTCGTAG-----ATT----T----TA--TTATT---TCC---T---AA---T-TTTT--aacatttgcagttcaaacatccggaggtttgctcatcgcggtgttattaatttgacagtgtagtctttc
gi|2 : TTTGC-TTCG-CTC---GTAAACGAATCTGCGGGGGTCCGCC-TCGTTTGGAAGTGC--TT-GTA-GAGAAC-ACAATCGT--GTC-TA-TTTA---CGT--GCA-GCG-CA-GC-GACTT-ATT---TGGTCGGCC-TT----GAATC-GC--CTCGTTAGTAAAATATCAATCG-TAGAATGTGT-------GCCTG--TTTTTA--TTC---G---AAGAATATTTT--G-TTTGAA-AAC-GCG-GGAATT--TGTT-TCGAATC-TGCTTATA-T-----CA-GAA-AGTGA-TGT-GCTACCTTAGGTGTTGTTA-------AT--------TTC---CTATG---C--GTA-TTTCAGAACA-T-GT----TGAGGTTTTA------C-ATAACTA-------TC--CAAAGGTCAGTCA-AGTCCCATAATTGTG---TTTT-AA-TCGTAAA-CA-ATTTGTTTAAGTACA-TTTCTCTG--TATTGT--CAATAGGTGTCTTC-A-AA-CTCGA-G-ATGGAA-GA-CGCAGT--CAAATGCAGGGTGTCGGTG--GT-TA-GC-GTT-AATTTTAAGTAT-GTATTGTAAAAG-AGTTT-ATTCTA---CGTAGA--TC--TAGAGGTGGTTCGTT---TGC-TCA-A-CAT-ACAAA--CTGTC----TACAG-G-AGAAGTTGA-AAAGCTC-CTGAAGCCACCAGTCGCAAGACCTT-GGTGATGGA--TTGCATCAAG-GCTTTAATATAATATGTGATTGATTCTGCCGC---T-CCCATTATCAC------T--ATACATGCCGTA-AGTC-TACGTTTCAGAACCTAGAATCAAAGAGCAGA-TACAG---GTTG---------------C-G-AGAGTAGATATTC----TTTAATC-T---CTTCCATTTGGTGTT-TT-GCT-ACCACTTTTATTAT-T--------T--CA-AGAAGCC--TTGA-A-ATGTTTCTTT-GCAGC-A-TTG-CTAT--AT--GAGGTTGTG-AACG----------AAGTTCTGG-TTATCGAAAATGACA
gi|9 : TTTAC-TTCGACA----GTAAA--ATG--T-----GTT-GTT-TCGTTTGGAAG--TCGTA--TA-GAGAAC-AC-ATCGTTTGCTAT----TA---CT---GCA-GCGGCT-GCA-ACTTTATT---T--T-GGTC-TTTT--GATCC-AT--CT-GT-A--TAAATATCAATTG-TAACATGT-TTGGAATAGATTG--TTTTAT--TTC---GGAGAA---T-TTTTTCC-TTG-AA-AATAACGAA--ATTCGT-TT-CAGATTTCT---TATATT-----CAGAAA-G-TG-ATGTGTCTACTTT-AG-GTT-TTA-GT-A--GT--------TTC---C-ATG--GT-GGTATTT-CAGAACA----T----CATGATATTT------T-ACAA-TA-------TC--CAAAGGTAAGTTAG--TTCTCTA--TGTGCT-TCTT-AACTCGAAG--CGCA--GATTTCA-TACATTTTTT-----TTTTGT--
gi|20 : TTTGC-TTCG--GCGGTATAAA------TT-----GTT-GCC-TCGTTTGGAAG--T--CGTGTA-GAGAA-TAC-ATCGTGTG--ATA-TC-A---CT---GCT-GTAGCA-GC-GACTTCATT---T--T-GGTC-TTTT--GATCT-AT--CT-AT-A---------TAAT----------TGTT----TGGACTG--TTTTAT--TTCGGAG---AG---T-GTTT--GCTT--GACAACAttt
gi|24 : tTTGC-TTGA-CAGTA-ATAGA--A---TT-----GTT-GCC-TCGTTTGTAAG--C--GC-GCA-GAGAAC-ACG-------GTCGT-GTATA---CT-------GCCGC------ACTTCAAT---C--T--GTC-TTTT--AATCC-AT--CT--T-A--TAAATATCAATCG-TAGAATa
gi|6 : TCGTTTGGAAGT-C--TT-GCA--AGGAC-A-GATCATGT-------TCTA---TTACTGCA-GCGGCA-GC-GACTTTATT---T--T-GGTC-TTTT--GATCC-GT--CT-GT-A--TAAATATCAATCG-TAGAATGT--T----TGGCCTG--TTTTAT--TTC---G---AAGAAT-TTTT--G-TTTGAA-AACAGCG-GG-ATT--TGTTTCAGATTTCT---TATA-TT----CA-GAA-AGTGA-TGTGTCTACCTTA-G-GTT-TTAT-TAA---T--------TTT---C-ATG--GT-GGTA-TTTCAGAGCA-A-GT----TG-AGTGTTT------T-ACAA-TACCCGGTATT--CAAAGGCAAGTCAGAATCCCGTA--TGTG---TTTTGAACTCGTAAACCA-ATTGATTTAA-TATA-TTTCT-TGT-TTTTGT--CA-TA-GTATCTTCAA-A--CT-GCGG-ATGGAA-GA-CGCAGTC-AATT-GCAGGGT-TGTCGG-TGT-T-AGC-TTTTAAtctggacacagcttttgcttgaaaa
gi|17 : G-A-TG--TGT-TCTACTTTAGGAGTTTTGGTAGAAGGATGTAGTCTGTTCGGGC-ATGCGACGGGTG-TTTCAGAATA-ATGTCTAGTGTTGTGTCT------T-A-AA-GA-------CTTCCAAAGGTAAGTTAGACTCCTGTA--TGTGTTTTTTT-AAATTGTAAACCA-ATTGGTTTTA-TACA-TTTCT-TG--TTTTTTACCA-TATAAATCTTC-AGA--CT-GCGG-ATGGAA--A-CGCAGTCAAATA--CAGGGT--------TGT-C-AGC-TTTTGATT--
gi|26 : atagtGGTA-TTTCAGAACA-T-GA----TG-AGTGTTT------T-ACAA-TA-------TC--CAAAAGTAAGTCAGAATCCTGTA--TGTGCT-TCTT-AATTCGAAAGCCC-ATTGCTTTTA-AACA-TTTCT-TGT-TTTTGT--CA-TATACATCTTC-A-t
gi|28 : GTGGTATTTCCAGTTT-ACAA-TA-------TC--CAAAGGCAAGTTAGAATCCTGTA--TGTG---
gi|3 : ttcagatttctcaaatagttcaaaatataactacttttagttttagtaatggtgggatcatttg---TTTT-A-TTTGTAGACCG-ATTGATTTTA-TATA-TTTCT-TAACTTTTG-------AA--ATCTTC-A-AA-CT-GG-GGATAAAA-AAATACAGT--CAAT-GCTAGAT-TGT-CAGTAT-TA-GC-TTTCAATTG-AACTAT-ATATTGTAAGGTAACTGTGATTCCA---TGTAGG--CCGAGA-A-GTGATT-------TTC-TCC-A-CA--TAAAA-ACTACC--TAT-CAGAG-AGG-TTCGA-AAAGCTC-CT------AC-GATAA-AAGACCTT-GATGATGG--ATTACATCAAGAGCTT-----TAATATAAGAT--GTTAT-T-GCCG-CGTC-AT-AC-CC------T--AAAC-AGCTG--TAGTTCTC-GATT-AGA-CCG-GAT-TAGAAAGC-GA-TAC-AAATGTAG---------------A---AGAGTA-----TT----TTTA-TC-TGT-TCCCCATTTTG--TG-TT-TC------CGGTT-TAAT-TTGATCATAT--CA-AAAGC-C--TTCATACATTTCTCATT-A-AGT-ACTG--CTAT--AC--G----TA-G-AATTAAGG-----AAAGTTC--ATTTATCAAAAATTGCAAG-TAAAGAATTTGACCTC-CTT-A
gi|5 : taaAA-TACA-TTTCT-TG--TTTT-------T--GCTTCTTC-A-AAACT-GC-GGATGGAATAA-CGCAGT--CAAATGCAGGGT-CGTCCG-GGG-TA-GA-TTTTAATTT-AAGTAT-ATAT-GCAAAAGGAGTTT-ATTCAA---CGTAGAGATCTAAG-AGGTGATTCGTT-TA-ACGCTC-AACAT-ACAAA--CTGTC----TACAG-GTAGAAGTTCG-AAAGCTC-CTGAG--CAC-AGTCG-AAGACCTTGGGGGATGGATTTTGCATCGAGAGCTTT--TAT-ATAT-TGAT--GTTCTTG-GCCGCT-CC-AT-ATAAC------TAGATAC-AGCCG--TAGT-CTA--TTT-GAC-CCT-GAT-CAAAGAGC-GAGTACAG---GTGG---------------AGG-AAAGTA-----TT----TTTA-TCATGC-TCCCCA-TTGG--TGTTT-GCTAACCAC--TT-TTAT-TA-------T--CATCAGAG-CCTTTGA-ACAATTTTCTTT-G-AGCAA-TGGCTTATA-ATGAGA-GTT-TGAAACGAAAG-TTTA----TCT--A-T----GAAAATGATACCACAAGAAC-TTAAACTCTTTT-ACA--CTTAATTGGGAGTTCCCATCTAAatttgctgccgtaaaacggctgaaattttgccaacaactttacttgggagggacatctcattgcaattgttggattcctctttaatgtatgcggttttatggaaaacgcaaaatcgttaacatcattgcaagtttcctggattatgtctggacatacatgtaacgtaattttcgttcaatggaattca
gi|29 : TTTCT-TG--TTTT-T--CA-AA-----CTCC-A----------G-ATGGAA--A-CGCTGT--CAAATGCAGGGT-TATCCA-TAT-T-AGC-TTTTAATT--t
gi|35 : atta-A--CT-GCAG-ATGGAA-AA-CGTAGT--CAAATGCAGGAT-TGTCCA-T-----AGCATTTTAAtt
gi|7 : -G-ATGGAA-GA-CGCAGTCAAATA--CAGGGT-TGT-CA--GTATCAGC-TTTTGATT--TAACAATGTATTGTAGAAGGAATTTTATTCTT---CGTAAA--TCGA-G-AGGTGGTTCATT---TGC-CTCAA-CAT-AC-AG-TCTGTC----TACAG-G-AGAAGTTTGAAAAGTTC-CTGTG--CAC-AGTCG-AAGACCTT-CGTGATGG--ATTGCATCGAGGGCTT-----TAATATAAGAT--GTTCT-T-GCCGCC-CC-AT-AT-AC------T--ATAC-ATCCA--TAGTCA-A-GTTT-AGA-CCG-GAT-TAGGGAGC-GA-TACAG---ATAC---------------A-G-GAAATT----ATT----TTTA-TC-TGCTACCCAATTTG---TG-TTCGCT-ACCAC--TT-TTAT-TA-------TA-TG-AAGAG-CCTTTGT-ACATTTCTCTTT-G-AGC-A-TCG-CTATattt
gi|25 : TTA-ATTGTAAGAATTTTTTTATTCAA---CCTAAA--TCGA-G-AGGTGATTCGTT---TGA-CTCAA-CATATC--A-ACTATCTTCAGAC---G-AGG-TTCGA-AAAGCTC-CCGTG--CAC-TGTGA-GAGgta
gi|15 : gtattaccttTATTATAAAATGAGTTTTATTCTG---CATTGA-------G-AAGTGGTTTGTT---TGC-CT-----------AA-ACTGTC----TACAG-G-AGAAGTTCA-AAAACTC-CCGTG--CAC-AGTCG-AATACCT----TGATGG--ATTACATTGAGAGC-CT---------TATGAT--GTTCT-T-GCtgcttgatggt
gi|4 : gAGATTTATTCTAGCTCGTAGA--TCAA----GGTA-TTCGTT---TGT-CTC-A--AT-ACACATACTTTT----TAAAG-G-AGAGGTTCG-AATGTTC-CTGTA--CAC-AGTCG-AAGAC---------------TTGCATCGAGAGCTTT-----AATGTA-GAT--GTTCT-T-GCCGCT-CC-AT-AT-ACATGTACT--ATACA-GCCGT--AGTT-TA-ATTT-AGA-CCG-AATTTGAGG-GC-GA-TAC-A---GAGGTACATGTACATGTATA-T-GGGATA----TTTCTTTTTTA--C-TGC-TCCCAATTTTTCTT---T-GCA-ACAAC-GTT-T-AT-TA-------TATCATGAGGT-T--TTGT-ACATTTCTC-TTTG-AGC-A-TTGC-TACATGT--AT-ATCAGG-AATAAAA-----AGAAGTCT--A-TAATT-AAAATGACACC-TAAGAAC-GTAA---C-TCT-A-AACTTTAATT-GGAG-TACCATCTAACTCCAGTTGCGAATCAGCATGGTGTTTCCGTTTACAAGAGAGATGAATGCATGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATTGTCTCAA-ATT--TGAACTGTGTTTATACGTAGCTGTAG-----GTTTTGCTCAATGGAATTCATATATTTTTTTAAATTTATATCGTCAAAGAAAAT---ATCAACA----------TCCATGAAAGTCG-------TT-TTAGAAT-TTTAGTTAAAGTGTTTACTTcgctgagagcgatgcagatgcagtagagtattgtatctgctaccgttttgtgttcgctacaaatattattatatcaagatcctttgtacatttctctttgagcattgctatata
gi|15 : AGAGC-GA-TGCAG---ATGC---------------A-GTAGAGTA------T----TGTA-TC-TGC-TACCGTTTTG---TG-TTCGCT-ACAAATATTATTATATC-------------AAGAT-CCTTTGT-ACATTTCTCTTT-G-AGC-A-TTG-CTATA-
gi|30 : gtattataaaatgagttttattctgcattgagaagtggtttgtttgcctaaactgtctacaggagaagttcaaaaactcccgtgcacagtcgaataccttgatggattacattgagagccttatgatgttcttgccgctg-G---GTGG---------------A-GGAGAGTG----TTT----TTTA-TC-TG-ACCCCCATTTTG--TG-TTCGCT-ACAACTta
gi|36 : ca-G-AGAGTA-----TT----TTTA-TC-TGC-TCCCCATTtgtatt
gi|12 : tacagatgtagAAAGTTC--A-TTATCAAAAATGACACC-TAATATC-TTAACTTC-TTTTACTACTTTAATT-GGAG-CCCCATGTAATGACAGCTGCAGATCATCGTGATGTTTCCGTTCAGAACAAAAATGCACACATGCAGTTTTAATTCTGGAAA-TGTAAACCCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTTGACATAGCTGTAA-----TTTTTGCTCTGTGGAATTCATA----TTTTGGGATTTATAACAGAGAACAAATTC--ATCAACATAGA--TACTTTCATGGAAGTC
gi|19 : acgAAAAAGACGCC-CAAAAAC-ATAACCTCCTTT-ACGACGTTAATT-GGAG-CTCCATCTAATGCCAATTGCGGATCATCGTGATGTTTCCGTTTGGAACAGAAATGCACACACTCGGTTTTAG---TGGAAAATTTAAAACCATTTGCATTAGCCCAG-TTT--TGGATTTCGTTTAGACAT
gi|27 : -TTAACCTC-TTT------------T-GGAG-TCCCATCTAATGTCAACTGTGGATCATCGTGGTGTTTCCGTTTCGAGCAGAAATGCACACACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGC
gi|3 : acATGCGGTTT----TATGGAAAACGCAAAATCGTTAACATCATTGCAAGTTTCCTGGATTATGTCTGGACATACATGTAACGTAATTTTCGTTCAATGGAATTCA
gi|8 : taattttatttgtagaccgattgattttatatatttcttaacttttgaaatcttcaaactggggataaaaaaatacagtcaatgctagattgtcagtattagctttcaattgaactatatattgtaaggtaactgtgattccatgtaggccgagaagtgattttctccacataaaaactacctatcagagaggttcgaaaagctcctacgataaaagaccttgatgatggattacatcaagagctttaatataagatgttattgccgcgtcataccctaaacagctgtagttctcgattagaccggattagaaagcgatacaaatgtagaagagtatttttatctgttccccattttgtgtttccggtttaatttgatcatatcaaaagccttcatacatttctcattaagtactgctatacgtagaattaaggaaagttcatttatcaaaaattgcaagtaaagaatttgacctccttaatttgctgccgtaaaacggctgaaattttgccaacaactttacttgggagggacatctcattgcaattgttggattcctctttaatgtTTCTGGGAATTTTGAAACCATTTACATCAGTCCAA-TTT--TGGATTTTATTTAGACATAGCTGTAG-----TTTTTGCTCAACGGAATTCAT-----TTTTTTTATTTATAACATAAAACAAAGTC--ATCAACATATA--GACTTCCATGGAAATC-T-----TTT-TTAGTAC-TTCAGCCAGACTGTTTATTTT-TATACCA-AATAGTGCAACTGATAAAATACTT------------TCCATTTCTTGTTCGAAATTGTCTGAAAGTGGTGATCCTAAGCGTACTTTGATATGTCTATTGC-TTACGCA--TCTCGAATATAGGTTTCAAGTACTGGTCGATTGTGCTTCTATTTATTCTGAAGCCAA-ATTGT--ATATCTGTTTTAAAAAACGTTATT
gi|23 : TAGCTGTAA-----TTTTCTCTCAATAGAGTTTACG----TTTTTGGATTTATAAGATATCAAGAAGTC--ATCGACATAAAGTGAC--GGATCGATGTCCG-----CTG-TTA-AACATTTTACAATGCTATTTATTTT-CAAACTA-
gi|34 : cacttttccaatttcttgagggtTCAATGGAATTCATA----TTTTTGGATTTATAATAT-GAAT----TTTAATCAATAAATA--GA
gi|13 : TA--GACTTTCA-AGAAGTTGT-----TTTATTA---C-TTTAGCCAGAATGTTTATTGT-TATACTA-GATAATGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATTCTTGTTCAA--------------GTTGATCCTAAGCATACATTAACATTTCTATTAT-CAAAAAAAT-----GATG--------AACT-CTGATAGA-TGCCCTT----------TGTGGCCAATTTAATAAAGATC--TTTT
gi|11 : GGAAGTCGTGTTTTTTT-TTTTTAC-TTTAGCCAGAATGTTTATTTG-CATACTA-GATAAAGTAATCGATAAAATATTTCCTTGTGGAACGCCCAATTCTTGTTCTAAATTATC-GA----GTTTATACTAAGCATACATTGAAACTTCTATTACTTTGGGAAAAAAT-G-ACG--------AAGTCCTGGTAGA-TGCCCTT----------TATAGCCAATACAATAAAGATC--TTTTggtttttttcagtattgcagtgttcgagttcgtgagtatggcaagtgctgctggaaacatggctctgttgagtgta
gi|14 : TT-TTATTAC-TTTAGCCAGAA-GTTTATTGTATATACTAGAATA-TGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATCTTTGTTC-AGATTG--------------ATCT-AGCATACATTAACATTTCTATTAT-CAAAAAAAT-----GAT---------AACT-CTGATAGA-TG-CCTT----------TGTGGCC-ATTTAATAAAGATC--TTTTttttttttttttcagtgttgcagtgttcgagctagtgagtatggcaaatgctgctggaaacatggctctgttgagtgt
gi|33 : gAGA-TGTCCTT----------TAAGGCCAACATTATGTAGATC--TTTTAAGATACCGTATTTCggtttttttcagtattgcagtgtcgaggttctgtaggtatggcaagtgctgctggaaacatggctctgttgagtgt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TTAAGTTTAAGAACATATTATTAGGCTAATTTAATTCTAAAGAGGAGGTTCGTTTGCTCCCACACAAAAAATTGCTGCTGTGGATGGTTGGAACGTTCCAGAGCTAAGCCGTGGACCCTGATGATGGATCGCGTAAAGTGCTTTAAGAACTGACATTCTTACAATATAACCATAATCTAAAATGGGATCAATGACACATAAATAATGTTAATTTCATCTCTACCATTT
Unaligned ( gi|21 ): TTACTTCTTCGGAAGTCGTGTAGAGAAAACGTTGTTTAATTGTGACTTCTAAACTCGACTTTATTTTGGTATTTTGAACCATATGTATACCAATTGTACGGTGTACAATATTTAAACTGTTTTATTTTGGATAACATATCTCTCAATAACAAAC
Unaligned ( gi|31 ): TTTGTACATGTTCTTTTTTGGGACTGTGATTGCGTACAAAAAGGCGAAGATAACATT
Unaligned ( gi|32 ): ATATGTTTCAGATTTCTTATATTCAAATAATATGTCTACTTTTAGTTTTAGTAATT
Alignments
lowQualScore : 4444444 1111111 1 555555555555555555555555 11111 2222 1111111111111 222222 2 1 11111 33333333333333333333 222222222222 111111 1111111 1 11 4444444444444 2 11 33 22222222 11 11 111 11 11111111111 1 111111111 11 222 111111 1 2222222222222222222222 11111 11 22 111111 111 22222 4444444444444444 1 11111 11111 11111 111 111111 2222 111 333333333333333 11 11111 5555 1
lowQualScore : 5 1 2222222 66 66 999 55 4444444 4 4 99 0 4 44 2 333333333333333333333333 4 8 4 5 4 4 777 4 99 55 4 55 00000 6666 4 0 5555555555555 1 1 66 888888 5 2 77 5 88 99 99 5 77 1 5 777 5 55 99999 5 88 3 88888888888888888888 77 6 66 333333333333 5 444444 5 5 66 66 6666666 66 1 999 5 1 44 88 1 5 4 4 55 1111111111111 5 5 2 4 00 4 22 11111111 4 55 5 55 0 4 66 4 88888888 4 4 0 777 777 4 55 4 555 4 66 4 55 8 4 4 7777 4 4 4 0 11 2 99999999999 88 66 5 5 5 6 3 999999999 99 555 666666 6 99 1 9 5 5 7777777777777777777777 9999 11111 55 4 4 1 8888 5 999 5 1 55 5 77 555555 5 111 1 1 1 5 77 5 00000 8 3333333333333333 9999 6 44 999 1 11111 1 6 6 1 0 22 1 6 99 66666 55555 3 22 1 000 3 1 77 3 2 999999 4444 77 000 6 6 1 0 5 1 0 3 777777777777777 11 0 3 0 88888 2 0000 2 1 0 6 1 0 1 1 1 22
lowQualScore : . . ....... .. .. ... .. ....... . . .. . . .. . ........................ . . . . . . ... . .. .. . .. ..... .... . . ............. . . .. ...... . . .. . .. .. .. . .. . . ... . .. ..... . .. . .................... .. . .. ............ . ...... . . .. .. ....... .. . ... . . .. .. . . . . .. ............. . . . . .. . .. ........ . .. . .. . . .. . ........ . . . ... ... . .. . ... . .. . .. . . . .... . . . . .. . ........... .. .. . . . . . ......... .. ... ...... . .. . . . . ...................... .... ..... .. . . . .... . ... . . .. . .. ...... . ... . . . . .. . ..... . ................ .... . .. ... . ..... . . . . . .. . . .. ..... ..... . .. . ... . . .. . . ...... .... .. ... . . . . . . . . ............... .. . . . ..... . .... . . . . . . . . . ..
lowQualScore : 0 4 5555555 99 99 111 44 4444444 0 0 77 6 0 77 0 555555555555555555555555 0 0 0 7 0 0 000 0 55 55 0 55 00000 6666 0 7 6666666666666 4 0 99 000000 7 9 99 7 77 99 22 7 99 4 7 111 0 11 22222 0 00 2 77777777777777777777 99 6 99 222222222222 0 444444 0 0 99 99 2222222 99 4 333 3 7 44 44 0 0 4 4 00 2222222222222 0 0 2 4 99 4 88 99999999 4 00 0 99 9 5 11 8 77777777 4 4 9 888 888 4 66 4 666 4 11 4 00 9 4 4 7777 4 4 4 9 99 2 00000000000 66 99 0 0 7 7 3 333333333 00 777 333333 7 22 0 8 7 0 6666666666666666666666 4444 11111 00 4 4 1 8888 0 111 0 0 11 7 99 111111 7 000 0 4 0 7 99 7 33333 0 0000000000000000 3333 7 77 333 4 22222 5 7 7 4 7 44 7 7 22 77777 88888 2 77 0 222 5 6 99 2 5 222222 0000 99 000 7 4 4 6 4 4 8 2 000000000000000 00 8 2 6 00000 0 2222 5 0 0 4 4 8 4 4 0 00
consensus : CCTTTGC-TTCG-CGCT--GTAA--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CTTGCA-GAGAAC-AC-ATCGT------GTGTC-TA-TCTA--C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA-TT-AAATATCAA-TCGTAGAATGT------TT----TGGCCTGTTTTAT--TTCGAAG-A---T-TTTTG-TT--GA-AA-NAGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTT-AGG-GTT-TTAN-TAAA-----------T-TTC---CATG--GCGGG--TATTTCAGAGCA-A-GT----TGTGGTG-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTCAGAATCCCGTA--TGTG-TTTTT--AACTCGTAAACCG-ATTGATTTNA-TACA-TTTCT-TG--TTTTGT--C-ATA-G-TATCTTC-AAACT-GCGG-ATGGAA-GA-CGCAGTCCAAATGCAGGGTTGTCCGTGTT-AGC-TTTTAA--TT-AAGTATTATATTGTAAAAGG--AGTTTTATTCTA---CGT--AGATC-GA-GAGGTGGTTCGTT---T---GC-CCC-A-CATA-CAAA-ACTGTC--TACAGG-AGA-GGTTCG-AAA-GCTC-CTGNG--CA-CAGTCG-AAGACCTT-GGTGATGGA--TTGCATCGAGAGCTTT----T--AATATA-TGAT--GTTCT-T-GCCGCT-CCA-TAT-AC------T--ATACAAGCCGTT-AGTCCTA-GTTT-AGA--CCGGA-TCAAAGAGC-GA-TACAG--------------GTGNA-G-AGAG----TATTT-----TT--ATC-TGC-TCCCCATTTTG--TG-TT--CGCT-ACNACT-TT-T--TAT--TA--T-CA-AAGAGCCTTTGNACATTTCTCTTTG-AGCATTG--C-TATA-AT--GA-GTTATGAACGAAAGG----AAAGTTC--A-T-TATCGAAAATGACACC-T-AAGAACTTAACCTC-TTT-ACAACTTTAATT-GGAG-CCCCATCTAATGCCAATTGCGGATCATCGTGATGTTTCCGTTTAGAACAGAAATGCACGCACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAAGTCGT------TTTTTA-T-AC--TTTAGCCAGAATG---TTTATTTT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAANGCCCAATTCTTGTTCGAAATTGTCT--GA----GT--TGATCCTAAGCGTACATTGANATTTCTATTACC----GAAAAAAT----GATGAANT-CTGGTAGATGCCCTTTATGGCCAATATAATAAAGATCTTTTAAGATACCGTATTTC
Reference ( family-223 ) : CCTTTGC-TTCG-CGCT-TGTAA--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CTTGCA-GAGAAC-AC-ATCGC------GTGTC-TA-TCTA--C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA-TT-AAATATCAA-TCGTAGAATGT------TT----TGGCCTGTTTTNT--TTCGAAG-A---T-TTTTG-TT--GA-AA-CAGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTT-AGG-GTT-TTAT-TAAA-----------T-TTC---CATG--GCGGG--TATTTCAGAACA-A-GT----TGTGGTG-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTCAGAATCCCGTA--TGTG-TTTTT--AACTCGTAAACCG-ATTGATTTNA-TACA-TTTCT-TG--TTTTGT--C-ATA-G-CATCTTC-AAACT-GC-G-ATGGAA-GA-CGCAGTCCAAATGCAGGGTTGTCCGTGTTAAGC-TTTTAA--TT-AAGTATTATATTGTAAAAGG--AGTTTTATTCTA---CGT--AGATC-GA-GAGGTGGTTCGTT---T---GC-CTC-A-CATA-CAAA-ACTGTC--TACAGG-AGA-AGTTCG-AAA-GCTC-CTGTG--CA-CAGTCG-AAGACCTT-GGTGATGGA--TTGCATCGAGAGCTTT----T--AATATA-TGAT--GTTCT-T-GCCGCT-CCA-TAT-AC------T--ATACAAGCCGTT-AGTCCTA-GTTT-AGA--CCGGATTTAAAGAGC-GA-TACAG--------------GTGGA-G-AGAG----TATTT-----TT--ATC-TGC-TCCCCATTTGG--TG-TT--CGCT-ACNACTGTT-T--TAT--TA--T-CA-AAGANCCTTTGNACATTTCTCTTTG-AGCATTG--C-TATA-AT--GA-GTTATGAACGAAAGA----AAAGTTC--A-T-TATCGAAAATGACACC-T-AAGAACTTAACCTC-TTT-ACAACTTTAATT-GGAG-TCCCATCTAATGCCAGCTGCGGATCATCGTGGTGTTTCCGTTTAGAACAGAAATGCACGCACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAA-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAANAAAGTC--ATCAACATATA--GACTTCCATGGAAGTCGT------TTTTTA-T-AC--TTTAGCCAGAATG---TTTATTTT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATTCTTGTTCGAAATTGTC---GA----GT--TGATCCTAAGCATACATTGACATTTCTATTACC----NAAGAAAT--TGGATGAANT-CTGGTAGATGCCCTTTGTGGCCAATATAATAAAGATCTTTTAAGANACNNTATTTC
gi|1 : CCTTTGC-TTCG-CGCTATGTAA--A--AAGCT-TG-------TTGCTATCGTTTGG-AAA--CTAGCA-GAGAACTACGATCAT------ATGTCGTAGTCTA--C-TAGCAAGCGGCA-GCAGACTTTATT---TTCGGTC--TTTT--GATCC-GT--CT-----GTAATT-AAATATTAA-TGCTAGAATGTA-----TT----TGGCCTGTTATTC--TTCGAA------T-TTTTG-TT--AA-AA-CAGCGG--ATTGATGTT-CAGAATT--TTA--TA-T-CAA-AGA---TGAATGT-T-CTACCTT-AAG-GTTCTTATATAAA-----------T-TTC---CATG--GCAGG--TATT-CAGAGCA-A-GT----TGTGGTG-TTC------TAC-A-A--TA--TTC-------AAAGGCAAGTCAGAATCCTGTA--TGTG-TTTT---AACTCGTAA--CA-ATTGATTTAA-TACACTTTCT-TG--TTTTGT--C-ATA-GGTATCTTC-AA-CT-GC-G-ATGGAA-GA-CGCAGT--AACAGCAGGGTTCTGCATGTTAAGC-TTTTAA--TT-AAGTATTATATTGCAAAAGG--AGTTTTATTCTA---CGT--AGATC-AATAAGGTGGTTCGTCGTAT---AC-CTC-A-CATT-CAAA-ACTGTCCATACAGG-AGA-TTTCTG-AAA-GCTCACTGAG--CA-CAGTCA-AAGACATT-GGTGATGGAA-TTGCATCGAGAGCTCT----TGTAATGTA-TGAT--GTTCTGT-GCAG-T-CCA-TAT-AC------T--ATACAAGCCGTTTAGTCCTA-GTTT-AGA--CCTGATCCAAAGAGC-GA-TAC-G--------------GTGGA-G-AGAG----TATTT-----TTT-ATC-TGCATCCCCATTTGGCTTG-TT---GCT-ACCACTGTT-T--TAT--TC--T-CA-AAGAGC--TTGAACATTTATCTT-G-AGCATGG--CCTATA-AT--GA-GTTATGAACGAAAGATTTAAAAGTTT--A-T-TATCGAAAATGACACC-T-AAAAAATTAATCTC-TTT-ACAACTTTAATT-GGAG-CCCCATCCAAAGTCAATTGTGGATCATCGTGATGTTTCCGTTTAGAGCAGAAATGCACACACGCAGTTTAAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAGGTCGT------TTTTTA-GAAC--TTCGGCCAGACTG---TTTATTTT-TATACTAAATAATGTGACCGATAAAATACTTCCTTGAGGAACGCCCATTTCTTGTTCGAAATTGTCT--GAAAGTGT--TGAACCTAAGCGTACATTGAAATGTCTATTACT----TAGGAAATTCTGAATGAAGT-TTGGCAGATGTCCTTTAAGGCCAATATTGTGAAGATCTTTTAAGATACCGTATTTC
gi|10 : CCTTTGC-TTCG--GCT--GTAA--A--A---T-TG-------TTGCC-GCGTTGAGCAAGT-CT-GCAAGAGAA--AC-AT----------------------------GCA-GCGGCAAGC-GACTTTATTAAATT-GGTC--TTTTTCGATCCCGTACCT-----GTA-TT-AAGT-TCAA-TCGTAGAATGT------TT-----GGTCTGTTTTTTATTTCGAAG-A---T-GTTTGGTT--GA-AA-AAGCGGG-ATT--TGTTTCAGATTT-CTTA--TATTTCAGCAAAGGATGA-TGTGT-CTACCTT-A-G-GTT-TTAT-T-AA-----------T-ATC---CATG--GCGGT--TATTTCAGAGCATA-AT----TG-GGTGTTTT------TACAA-A--TA--TTC-------AAA-GTAAGTCAGAAGCCCGTA--TGTc
gi|11 : GGAAGTCGTGTTTTTTTTTTT-T-AC--TTTAGCCAGAATG---TTTATTTG-CATACTAGATAAAGTAATCGATAAAATATTTCCTTGTGGAACGCCCAATTCTTGTTCTAAATTATC---GA----GT--TTATACTAAGCATACATTGAAACTTCTATTACTTTGGGAAAAAAT----GACGAAGTCCTGGTAGATGCCCTTTATAGCCAATACAATAAAGATCTTTT
gi|12 : ----AAAGTTC--A-T-TATCAAAAATGACACC-T-AATATCTTAACTTC-TTTTACTACTTTAATT-GGAG-CCCCATGTAATGACAGCTGCAGATCATCGTGATGTTTCCGTTCAGAACAAAAATGCACACATGCAGTTTTAATTCTGGAAA-TGTAAACCCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTTGACATAGCTGTAA-----TTTTTGCTCTGTGGAATTCATA----TTTTGGGATTTATAACAGAGAACAAATTC--ATCAACATAGA--TACTTTCATGGAAGTCttttttttttttcagtgttgcagtgttcgagctagtgagtatggcaaatgctgctggaaacatggctctgttgagtgt
gi|13 : acgTA--GACTTTCA-AGAAGTTGT------TTTAT--T-AC--TTTAGCCAGAATG---TTTATTGT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATTCTTGT---------TC---AA----GT--TGATCCTAAGCATACATTAACATTTCTATTATC----AAAAAAAT----GATGAACT-CTGATAGATGCCCTTTGTGGCCAATTTAATAAAGATCTTTT
gi|14 : TTTTA-TTAC--TTTAGCCAGAA-G---TTTATTGTATATACTAGAATATGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATCTTTGTTCAGA----------------T--TGATCT--AGCATACATTAACATTTCTATTATC----AAAAAAAT----GAT-AACT-CTGATAGATG-CCTTTGTGGCC-ATTTAATAAAGATCTTTTggtttttttcagtattgcagtgttcgagttcgtgagtatggcaagtgctgctggaaacatggctctgttgagtgta
gi|15 : gTATTATAAAATG--AGTTTTATTCTG---C------ATT-GA-GAAGTGGTTTGTT---T---GC-CT-----------AA-ACTGTC--TACAGG-AGA-AGTTCA-AAA-ACTC-CCGTG--CA-CAGTCG-AATACCT----TGATGGA--TTACATTGAGAGCCT------------TA-TGAT--GTTCT-T-GCCGCT-ggtttttttcagtattgcagtgtcgaggttctgtaggtatggcaagtgctgctggaaacatggctctgttgagtgt
gi|15 : gAGAGC-GA-TGCAG--------------ATGCA-GTAGAG----TATTG-----T---ATC-TGC-TACC-GTTTTG--TG-TT--CGCT-ACAAATATTAT--TAT---A--T-CA-A-GATCCTTTGTACATTTCTCTTTG-AGCATTG--C-TATA-gagagcgatgcagatgcagtagagtattgtatctgctaccgttttgtgttcgctacaaatattattatatcaagatcctttgtacatttctctttgagcattgctatata
gi|16 : gtattataaaatgagttttattctgcattgagaagtggtttgtttgcctaaactgtctacaggagaagttcaaaaactcccgtgcacagtcgaataccttgatggattacattgagagccttatgatgttcttgccgctgCCTTTGC-TTTG--GCT--GTAT--A--AG--T-AG-------TTGCC-TCGTTTGG-AAGT-CTTGTA-GAGAAT-AC-ATTGT-------TAGC-TA-TTT---C-T-GCA-GCAGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-AT--CT-----GTA--T-AAATATTAA-TCGTAGAATG-------TT----TGGCCTGCTTTAT--TTCGAAT-AT--T-TTTTGTTT--GA-AA-AAGTGta
gi|17 : AG--TGA-TGTGTTCTACTTT-AGGAGTT-TTGG-TAGAAGGATGTAGTCTGTTCGGGCATGCGACGGG--TGTTTCAGAATA-ATGTCTAGTGTTGTG-TCT------TA--A-A--GACTTCC-------AAAGGTAAGTTAGACTCCTGTA--TGTG-TTTTTTTAAATTGTAAACCA-ATTGGTTTTA-TACA-TTTCT-TG--TTTTTTACC-ATATA-AATCTTC-AGACT-GCGG-ATGGAA--A-CGCAGT-CAAATACAGGGTTGTC-------AGC-TTTTGA--TT-aataacatttgcagttcaaacatccggaggtttgctcatcgcggtgttattaatttgacagtgtagtctttc
gi|18 : atTTAAGTTT-AAGAAC-ATATTATTA--GGCTAATTTAATTCTA--------------AA-GAGGAGGTTCGTT---T---GCTCCC-A-CACA-AAAA-ATTG-C--TGCTGT-GGATGGTTGG-AAC-GTTC-CAGAG--CT-AAGCCG-TGGACCCT-GATGATGGA--TCGCGTAAAGTGC-TT----T--AAGAAC-TGAC--ATTCT-T-ACt
gi|19 : AAAAAGACGCC-C-AAAAACATAACCTCCTTT-ACGACGTTAATT-GGAG-CTCCATCTAATGCCAATTGCGGATCATCGTGATGTTTCCGTTTGGAACAGAAATGCACACACTCGGTTTTAG---TGGAAAATTTAAAACCATTTGCATTAGCCCAG-TTT--TGGATTTCGTTTAGACATaatataaccataatctaaaatgggatcaatgacacataaataatgttaatttcatctctaccattt
gi|2 : TTTGC-TT---CGCT-CGTAA--ACGAA--TCTGCGGGGGTCCGCC-TCGTTTGG-AAGTGCTTGTA-GAGAAC-ACAAT--C------GTGTC-TA-TTTA--CGT-GCA-GC-GCA-GC-GAC-TTA-T---TT-GGTCGGCCTT--GAATC-GC--CTCGTTAGTA----AAATATCAA-TCGTAGAATGT------GT------GCCTGTTTTTA--TTCGAAGAA---TATTTTGTTT--GA-AA-ACGCGGGAATT--TGTTTCGAATCTGCTTA--TA--TCAG-AAAG--TGA-TGTG--CTACCTT-A-G-GTG-TTGT-TAAT-----------T-TCC---TAT---GC--G--TATTTCAGAACA-T-GT----TGAG--G-TTT------TAC-ATAACTA--TCC-------AAAGGTCAGTCA-AGTCCCATAATTGTG--TTTT--AA-TCGTAAA-CA-ATTTGTTTAAGTACA-TTTCTCTG--TATTGT--CAATAGG-TGTCTTC-AAACTCGA-G-ATGGAA-GA-CGCAGT-CAAATGCAGGG-TGTCGGTGGTTAGC--GTTAATTTT-AAGTA-TGTATTGTAAAA-G--AG-TTTATTCTA---CGT--AGATC-TA-GAGGTGGTTCGTT---T---GC-TCA-A-CATA-C-AA-ACTGTC--TACAGG-AGA-AGTTGA-AAA-GCTC-CTGAAGCCACCAGTCGCAAGACCTT-GGTGATGGA--TTGCATCAAG-GCTTTAATAT--AATATG-TGATTGATTC--T-GCCGCTCCCATTATCAC------T--ATACATGCCGTA-AGT-CTACGTTTCAGAACCTAGAATCAAAGAGCAGA-TACAG--------------GTTGC-G-AGAGTAGATATTC-----TTTAATC-T-C-T-TCCATTTGG--TGTTT--TGCT-ACCAC--TT-T--TAT--TATTT-CA-AGAAGCC-TTGAA-ATGTTTCTTTGCAGCATTG--C-TAT--AT--GAGGTTGTGAACG----------AAGTTCTGG-T-TATCGAAAATGACA
gi|20 : TTTGC-TTCGGCG----GTAT--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CGTGTA-GAGAAT-AC-ATCGT------GTG-A-TA-TC-A--C-T-GCT-GTAGCA-GC-GACTTCATT---TT-GGTC--TTTT--GATCT-AT--CT-----ATA-T---------AA-TTG--------------TT----TGGACTGTTTTAT--TTCGGAG-AG--T-GTTTGCTT--GACAA-CA
gi|21 : t-------TTACT-TC-TTCGG-AAGT-CGTGTA-GAGAAA-AC-GTTGTTTAATTGTGAC-T--TCTAAAC-T-------------C-GACTTTATT---TT-GGTA--TTTT--GAACC-AT--AT-----GT-------ATACCAA-TTGTACGGTGTACAATATT----TAAACTGTTTTAT--TTTGGAa
gi|22 : CTTTGCCTTCG--GCC-TGGAA--A--AA--T--G-------TTGCC-TCATTTGG-AAG--CTTACC-GAGAAC-AC-AT---------GT-TC-TA-T-TA--C-TTGCA-GCGGCA-GC-GACTTTATT---TT-GGTCT-TTTT--GATCC-GT--CT-----GTA-TTAAAATATCAATTCGTAGA---T------TT----Ttaacatatctctcaataacaaac
gi|23 : TAGCTGTAA-----TTTTCTCTCAATAGAGTTTACG----TTTTTGGATTTATAAGATATCAAGAAGTC--ATCGACATAAAGTGAC--GGATCGATGTCCG------CTGTTA-A-ACATTTTA-C---AATGCTATTTATTTT-CAAACTAattatttcctaattttt
gi|24 : cacttttccaatttcttgagggtTTGC-TTGA-CA----GTAATAG--AA--T-TG-------TTGCC-TCGTTTGT-AAG--CGCGCA-GAGAAC-ACGGTCGT------GTA--------TA--C-T-GCC-GC---------ACTTCAAT---CT--GTC--TTTT--AATCC-AT--CT------TA--T-AAATATCAA-TCGTAGAA--T------TC----TGG
gi|25 : TTA-ATTGTAAGAAT--TTTTTTATTCAA---CCT--AAATC-GA-GAGGTGATTCGTT---T---GA-CTCAA-CATATC--A-ACTATC--TTCAGA-CGA-GGTTCGAAAA-GCTC-CCGTG--CA-CTGTGA-GAGTGCTT-GATGGTacacagcttttgcttgaaaa
gi|26 : gtattaccttGG--TATTTCAGAACA-T-GA----TG-AGTG-TTT------TAC-A-A--TA--TCC-------AAAAGTAAGTCAGAATCCTGTA--TGTGCTTCTT--AATTCGAAAGCCC-ATTGCTTTTA-AACA-TTTCT-TGT-TTTTGT--C-ATATA-CATCTTC-A
gi|27 : ACTTAACCTC-TTT------------T-GGAG-TCCCATCTAATGTCAACTGTGGATCATCGTGGTGTTTCCGTTTCGAGCAGAAATGCACACACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGC
gi|28 : TTCAGATTT-CTCAAATAGTTCAA-AATA--TAA-------CTACTTTTAG---TT-TTAG-TAA----------------------TG--GTGGGATCATTT----------G------GTGGTA-TTTCCAGTTTAC-A-A--TA--TCC-------AAAGGCAAGTTAGAATCCTGTA--TGTG-
gi|29 : A-TTTCT-TG--TTTT-----------------TC-AAACT-CCAG-ATGGAA--A-CGCTGTC-AAATGCAGGGTTATCCATATT-AGC-TTTTAA--TT-
gi|3 : attTTTT--A-TTTGTAGACCG-ATTGATTTTA-TATA-TTTCT-TAACTTTTG-------A-A--ATCTTC-AAACT-GG-GGATAAAA-AAATACAGTC--AATGCTAGATTGTCAGTATTA-GC-TTTCAA--TTGAACTAT-ATATTGTAAGGTA--ACTGTGATTCCA---TGT--AGGCC-GA-GAAGTGATT---T---T----C-TCC-A-CATA--AAA-ACTACC--TATCAG-AGA-GGTTCG-AAAAGCTC-CT------A-CGATAA-AAGACCTT-GATGATGGA--TTACATCAAGAGC-TT----T--AATATA-AGAT--GTTAT-T-GCCGCG-TCA-TAC-CC------T--AAAC-AGCTG-T-AGTTCTC-GATT-AGA--CCGGA-TTAGAAAGC-GA-TACAA--------------ATGTA-GAAGAG----TATTT-----TT--ATC-TGT-TCCCCATTTTG--TG-TTTCCGGT-TTAA---TT-T--GATCATA--T-CA-AA-AGCCTTCATACATTTCTCATTA-AGTACTG--C-TATACGTA-GA-ATT--------AAGG----AAAGTTC--ATT-TATCAAAAATTGCAAG-TAAAGAATTTGACCTC-CTT-Att
gi|3 : taaATGTATGCGGTTTTA----TGGAAAACGCAAAATCGTTAACATCATTGCAAGTTTCCTGGATTATGTCTGGACATACATGTAACGTAATTTTCGTTCAATGGAATTCAatttgctgccgtaaaacggctgaaattttgccaacaactttacttgggagggacatctcattgcaattgttggattcctctttaatgtatgcggttttatggaaaacgcaaaatcgttaacatcattgcaagtttcctggattatgtctggacatacatgtaacgtaattttcgttcaatggaattca
gi|30 : taattttatttgtagaccgattgattttatatatttcttaacttttgaaatcttcaaactggggataaaaaaatacagtcaatgctagattgtcagtattagctttcaattgaactatatattgtaaggtaactgtgattccatgtaggccgagaagtgattttctccacataaaaactacctatcagagaggttcgaaaagctcctacgataaaagaccttgatgatggattacatcaagagctttaatataagatgttattgccgcgtcataccctaaacagctgtagttctcgattagaccggattagaaagcgatacaaatgtagaagagtatttttatctgttccccattttgtgtttccggtttaatttgatcatatcaaaagccttcatacatttctcattaagtactgctatacgtagaattaaggaaagttcatttatcaaaaattgcaagtaaagaatttgacctccttaatttgctgccgtaaaacggctgaaattttgccaacaactttacttgggagggacatctcattgcaattgttggattcctctttaCAG--------------GTGGA-GGAGAG----TGTTT-----TTT-ATC-TGA-CCCCCATTTTG--TG-TT--CGCT-ACAACT
gi|32 : -ATA--TGTTTCAGATTT-CTTA--TA-TTC----AAA--TAA-TATGT-CTACTTT--TA-GTT-TTAG-TAAtgtatt
gi|33 : AGATGTCCTTTAAGGCCAACATTATGTAGATCTTTTAAGATACCGTATTTCtt
gi|34 : TCAATGGAATTCATA----TTTTTGGATTTATAATAT-GAAT----TTTAATCAATAAATA--GAtat
gi|35 : ACT-GCAG-ATGGAA-AA-CGTAGTC-AAATGCAGGATTGTCCAT----AGCATTTTAA--
gi|36 : -TACAG--------------ATGTA-GGAGAG----TATTT-----TT--ATC-TGC-TCCCCATTattt
gi|4 : --AGATTTATTCTAGCTCGT--AGATC-AA-G--GTA-TTCGTT---T---GT-CTC-A--ATA-CACATACTTTT--TAAAGG-AGA-GGTTCG-AAT-GTTC-CTGTA--CA-CAGTCG-AAGAC---------------TTGCATCGAGAGCTTT-------AATGTA--GAT--GTTCT-T-GCCGCT-CCA-TAT-ACATGTACT--ATACA-GCCGT--AGTT-TA-ATTT-AGA--CCGAATTTGAGG-GC-GA-TACAGAGGTACATGTACATGTATA-T-GGGA----TATTTCTTTTTT--A-C-TGC-TCCCAATTTT---TC-TT--TGCA-ACAAC-GTT-TATTAT---A--T-CA-T-GAGGTTTTGTACATTTCTCTTTG-AGCATTG--C-TACATGT--AT-ATCAGGAATAAAA-A----GAAGTCT--A-T-AATT-AAAATGACACC-T-AAGAACGTAAC----TCT-A-AACTTTAATT-GGAG-TACCATCTAACTCCAGTTGCGAATCAGCATGGTGTTTCCGTTTACAAGAGAGATGAATGCATGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATTGTCTCAA-ATT--TGAACTGTGTTTATACGTAGCTGTAG-----GTTTTGCTCAATGGAATTCATATATTTTTTTAAATTTATATCGTCAAAGAAAAT---ATCAACA----------TCCATGAAAGTCGT------TTTAGA---AT--TTTAGTTAAAGTG---TTTACTT
gi|5 : A-TACA-TTTCT-TG--TTTT-T--------G-CTTCTTCAAAACT-GCGG-ATGGAATAA-CGCAGT-CAAATGCAGGGTCGTCCGGGGT-AGA-TTTTAAT-TT-AAGTA-TATA-TGCAAAAGG--AG-TTTATTCAA---CGTAGAGATCTAA-GAGGTGATTCGTT---TAACGC-TCA-A-CATA-C-AA-ACTGTC--TACAGGTAGA-AGTTCG-AAA-GCTC-CTGAG--CA-CAGTCG-AAGACCTTGGGGGATGGATTTTGCATCGAGAGCTTT----T---ATATATTGAT--GTTCT-TGGCCGCT-CCA-TATAAC------TAGATAC-AGCCG-T-AGT-CTA--TTT-GAC--CCTGA-TCAAAGAGC-GAGTACAG--------------GTGGAGG-AAAG----TATTT-----TT--ATCATGC-TCCCCA-TTGG--TG-TT--TGCTAACCAC--TT-T--TAT--TA--T-CATCAGAGCCTTTGAACAATTTTCTTTG-AGCAATGGCT-TATA-ATGAGA-GTT-----TGAAACG----AAAGTTT--A-TCTAT-GAAAATGATACCAC-AAGAACTTAAACTCTTTT-ACA--CTTAATTGGGAGTTCCCATCTAAT
gi|6 : a-TCGTTTGG-AAGT-CTTGCA--AGGAC-AG-ATCAT------GT-TC-TA-T-TA--C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA-T--AAATATCAA-TCGTAGAATGT------TT-----GGCCTGTTTTAT--TTCGAAG-AA--T-TTTTG-TTTGAA-AA-CAGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTT-AGG--TT-TTAT-TAA------------T-TTT---CATG--GTGG---TATTTCAGAGCA-A-GT----TG-AGTG-TTT------TAC-A-A--TA--CCCGGTATTCAAAGGCAAGTCAGAATCCCGTA--TGTG-TTTTG--AACTCGTAAACCA-ATTGATTTAA-TATA-TTTCT-TGT-TTTTGT--C-ATA-G-TATCTTC-AAACT-GCGG-ATGGAA-GA-CGCAGT-CAATTGCAGGGTTGTCGGTGTT-AGC-TTTTAA--
gi|7 : -G-ATGGAA-GA-CGCAGTC-AAATACAGGGTTGTCAGTATCA-GC-TTTTGA--TT-TAACAATGTATTGTAGAAGG--AATTTTATTCTT---CGT--AAATC-GA-GAGGTGGTTCATT---T---GC-CTC-AACATA-CAGT--CTGTC--TACAGG-AGA-AGTTTGAAAA-GTTC-CTGTG--CA-CAGTCG-AAGACCTT-CGTGATGGA--TTGCATCGAGGGC-TT----T--AATATA-AGAT--GTTCT-T-GCCGCC-CCA-TAT-AC------T--ATAC-ATCCA-T-AGTCA-A-GTTT-AGA--CCGGA-TTAGGGAGC-GA-TACAG--------------ATACAGG-AAAT----TATTT-----TT--ATC-TGC-TACCCAATTTG--TG-TT--CGCT-ACCAC--TT-T--TAT--TA--TATG-AAGAGCCTTTGTACATTTCTCTTTG-AGCATCG--C-TAT
gi|8 : TTCTGGGAATTTTGAAACCATTTACATCAGTCCAA-TTT--TGGATTTTATTTAGACATAGCTGTAG-----TTTTTGCTCAACGGAATTCAT-----TTTTTTTATTTATAACATAAAACAAAGTC--ATCAACATATA--GACTTCCATGGAAATC-T------TTTTTAGT-AC--TTCAGCCAGACTG---TTTATTTT-TATACCAAATAGTGCAACTGATAAAATAC-----TTT-------CCATTTCTTGTTCGAAATTGTCTGAAA----GTGGTGATCCTAAGCGTACTTTGATATGTCTATTGCT----TAgta
gi|9 : TTTAC-TTCGACA----GTAA--A--AT--G-TG-------TTGTT-TCGTTTGG-AAGT-CGTATA-GAGAAC-AC-ATCGT------TTG-C-TA-T-TA--C-T-GCA-GCGGCT-GC-AACTTTATT---TT-GGTC--TTTT--GATCC-AT--CT-----GTA-T--AAATATCAA-TTGTAACATGT------TTGGAATAGATTGTTTTAT--TTCGGAG-AATTT-TTTCC-TT--GA-AAATAACGAA-ATT--CGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACTTT-A-G-GTT-TTAG-T-AG-----------T-TTC---CATG--GT-GG--TATTTCAGAACA----T----CATGATA-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTTAG--TTCTCTA--TGTGCTTCTT--AACTCG--AAGCGCA--GATTTCA-TACA-TTTTT-T---TTTTGT--cgcatctcgaatataggtttcaagtactggtcgattgtgcttctatttattctgaagccaaattgtatatctgttttaaaaaacgttatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|31 ): TTTGTACATGTTCTTTTTTGGGACTGTGATTGCGTACAAAAAGGCGAAGATAACATT
Alignments
lowQualScore : 222222 1111111 1 444444444444444444444444 11111 2222 1111111111111 222222 2 1 11111 33333333333333333333 222222222222 111111 1111111 1 11 4444444444444444 11 33 11111 11 11 1111111 222 1 11 11111111111 1 111111111 11 222 111111 22222222222222 111 11111 11 222 1 22222 3333333333333333 1 11111 11111 111 111111 2222 111 4444444444444444 11 22222 2222 1
lowQualScore : 5 777777 66 66 999 55 4444444 4 4 99 0 4 44 2 333333333333333333333333 4 8 4 5 4 4 777 4 99 55 4 55 00000 6666 4 0 5555555555555 2 66 888888 5 2 77 5 66 99 99 5 77 1 5 777 5 55 99999 5 66 3 88888888888888888888 77 6 66 1 333333333333 5 444444 5 5 66 66 6666666 66 1 999 5 1 44 88 1 5 4 4 55 1111111111111111 5 4 00 4 22 11111 4 4 55 5 55 0 4 66 4 88888888 4 4 0 2222222 4 4 88 111 4 66 4 4 3 4 2 66 4 4 4 0 11 2 99999999999 88 66 5 5 5 6 3 999999999 99 555 666666 6 6 99 6 5 5 66666666666666 1 999 9999 11111 55 4 4 1 66 5 999 5 1 777 1 888888 5 55 0 1 1 5 77 5 00000 8 1111111111111111 9999 6 44 999 1 5 222 5 5 66 3 6 2 0 22 1 6 99 66666 55555 3 22 1 000 3 1 77 3 2 999999 4444 77 000 6 6 1 0 3 1 5555555555555555 11 0 1 0 55555 1111 2 1 0 6 1 0 1 1
lowQualScore : . ...... .. .. ... .. ....... . . .. . . .. . ........................ . . . . . . ... . .. .. . .. ..... .... . . ............. . .. ...... . . .. . .. .. .. . .. . . ... . .. ..... . .. . .................... .. . .. . ............ . ...... . . .. .. ....... .. . ... . . .. .. . . . . .. ................ . . .. . .. ..... . . .. . .. . . .. . ........ . . . ....... . . .. ... . .. . . . . . .. . . . . .. . ........... .. .. . . . . . ......... .. ... ...... . . .. . . . .............. . ... .... ..... .. . . . .. . ... . . ... . ...... . .. . . . . .. . ..... . ................ .... . .. ... . . ... . . .. . . . . .. . . .. ..... ..... . .. . ... . . .. . . ...... .... .. ... . . . . . . ................ .. . . . ..... .... . . . . . . . .
lowQualScore : 0 999999 99 99 111 44 4444444 0 0 77 6 0 77 0 000000000000000000000000 0 0 0 7 0 0 000 0 55 55 0 55 00000 6666 0 7 6666666666666 9 11 444444 0 9 99 7 77 99 22 7 99 4 7 111 0 11 22222 0 00 2 77777777777777777777 99 6 99 1 222222222222 0 444444 0 0 99 99 2222222 99 4 333 3 7 44 44 0 0 4 4 00 4444444444444444 0 4 99 4 88 99999 4 4 00 0 99 9 5 11 8 77777777 4 4 9 0000000 4 4 33 000 4 11 4 4 3 4 6 11 4 4 4 9 99 2 00000000000 66 99 0 0 7 7 3 333333333 00 777 333333 7 7 22 7 7 0 11111111111111 0 444 4444 11111 00 4 4 1 99 0 111 0 0 444 4 111111 7 99 1 4 0 7 99 7 33333 0 2222222222222222 3333 7 77 333 4 0 444 7 7 11 7 7 5 7 44 7 7 22 77777 88888 2 77 0 222 5 6 99 2 5 222222 0000 99 000 7 4 4 6 8 4 8888888888888888 00 8 0 6 55555 2222 5 0 0 4 4 8 4 4
consensus : CCTTTGC-TTCGCGCT--GTAA--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CTTGCA-GAGAAC-AC-ATCGT------GTGTC-TA-TCTA--C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA-TT-AAATATCAA-TCGTAGAATGT------TT----TGGCCTGTTTT--ATTTCGAAG-A---T-TTTTG-TT--GA-AAA-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTT-AGG-GTT-TTAN-TAAA-----------T-TTC---CATG--GCGGG--TATTTCAGAGCA-A-GT----TGTGGTG-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTCAGAATCCCGTA--TGTG-TTTTT--AACTCGTAAACCG-ATTGATTTNA-TACA-TTTCT-TG--TTTTGT--C-ATA-G-T--ATCTTC-AAACTGCG-GATGGAA-GA-CGCAGT-CAAATGCAGGGTTGTCCGT-GTTA-GC-TTTTAA--TT-AAGTATTATATTGTAAAAGG--AGTTTTATTCTA---CGT--AGATC-GA-GAGGTGGTTCGTT---T---G-C-CCC-ACATA-CAAA-ACTGTC--TACAGG-AGA-GGTTCG-AAAGCTC-CTGNG--CA-CAGTCG-AAGACCTT-GGTGATGGA--TTGCATCGAGAGCTTT----T--AATATA-TGAT--GTTCT-T-GCCGCT-CCA-TAT-AC------T--ATACAAGCCGTT-AGTCCTA-GTTT-AG-ACC--GGATC-AGAGAGC-GA-TACAG--------------GTGNA-G-AGAG----TATTT-----TT--ATC-TGC-TCCCCATTTTG--TG-TT--CGCT-ACNAC-T-TT-TTAT--TA--T-CA-AAGAGCCTTTGNACATTTCTCTTTG-AGCATTG--C-TATA-AT--GA-GTTATGAACGAAAGG----AAAGTTC--A-T-TATCGAAAATGACACC-T-AAGAACTTAACCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCTAATGNCAATTGC-GGATCATCGTGATGTTTCCGTTTAGAACAGAAATGCACGCACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAAGTCGT------TTTTTA-T-AC--TTTAGCCAGAATG---TTTATTTT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAANGCCCAATTCTTGTTCGAAATTGTCTGAAA--GT--TGATCCTAAGCGTACATTGANATTTCTATTACC----GAAAAAAT----GATGAANT-CTGGTAGATGCCCTTTATGGCCAATATAATAAAGATCTTTTAAGATACCGTATTTC
Reference ( family-223 ) : CCTTTGC-TTCGCGCT--GTAA--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CTTGCA-GAGAAC-AC-ATCGT------GTGTC-TA-TCTA--C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA-TT-AAATATCAA-TCGTAGAATGT------TT----TGGCCTGTTTT--ATTTCGAAG-A---T-TTTTG-TT--GA-AAN-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTT-AGG-GTT-TTAN-TAAA-----------T-TTC---CATG--GCGGG--TATTTCAGAGCA-A-GT----TGTGGTG-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTCAGAATCCCGTA--TGTG-TTTTT--AACTCGTAAACCG-ATTGATTTNA-TACA-TTTCT-TG--TTTTGT--C-ATA-G-T--ATCTTC-AAACTGCG-GATGGAA-GA-CGCAGTCCAAATGCAGGGTTGTCCGT-GTTA-GC-TTTTAA--TT-AAGTATTATATTGTAAAAGG--AGTTTTATTCTA---CGT--AGATC-GA-GAGGTGGTTCGTT---T---G-C-CCC-ACATA-CAAA-ACTGTC--TACAGG-AGA-GGTTCG-AAAGCTC-CTGNG--CA-CAGTCG-AAGACCTT-GGTGATGGA--TTGCATCGAGAGCTTT----T--AATATA-TGAT--GTTCT-T-GCCGCT-CCA-TAT-AC------T--ATACAAGCCGTT-AGTCCTA-GTTT-AG-ACC--GGATC-AAAGAGC-GA-TACAG--------------GTGNA-G-AGAG----TATTT-----TT--ATC-TGC-TCCCCATTTTG--TG-TT--CGCT-ACNAC-T-TT-TTAT--TA--T-CA-AAGAGCCTTTGNACATTTCTCTTTG-AGCATTG--C-TATA-AT--GA-GTTATGAACGAAAGG----AAAGTTC--A-T-TATCGAAAATGACACC-T-AAGAACTTAACCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCTAATGCCAATTGC-GGATCATCGTGATGTTTCCGTTTAGAACAGAAATGCACGCACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAAGTCGT------TTTTTA-T-AC--TTTAGCCAGAATG---TTTATTTT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAANGCCCAATTCTTGTTCGAAATTGTCTGA----GT--TGATCCTAAGCGTACATTGANATTTCTATTACC----GAAAAAAT----GATGAANT-CTGGTAGATGCCCTTTATGGCCAATATAATAAAGATCTTTTAAGATACCGTATTTC
gi|1 : CCTTTGC-TTCGCGCTATGTAA--A--AAGCT-TG-------TTGCTATCGTTTGG-AAA--CTAGCA-GAGAACTACGATCAT------ATGTCGTAGTCTA--C-TAGCAAGCGGCA-GCAGACTTTATT---TTCGGTC--TTTT--GATCC-GT--CT-----GTAATT-AAATATTAA-TGCTAGAATGTA-----TT----TGGCCTGTTAT--TCTTCGAA------T-TTTTG-TT--AA-AAC-AGCGG--ATTGATGTT-CAGAATT--TTA--TA-T-CAA-AGA---TGAATGT-T-CTACCTT-AAG-GTTCTTATATAAA-----------T-TTC---CATG--GCAGG--TATT-CAGAGCA-A-GT----TGTGGTG-TTC------TAC-A-A--TA--TTC-------AAAGGCAAGTCAGAATCCTGTA--TGTG-TTTT---AACTCGTAA--CA-ATTGATTTAA-TACACTTTCT-TG--TTTTGT--C-ATA-GGT--ATCTTC-AA-CTGCG--ATGGAA-GA-CGCAGT--AACAGCAGGGTTCTGCAT-GTTAAGC-TTTTAA--TT-AAGTATTATATTGCAAAAGG--AGTTTTATTCTA---CGT--AGATC-AATAAGGTGGTTCGTCGTAT---A-C-CTC-ACATT-CAAA-ACTGTCCATACAGG-AGA-TTTCTG-AAAGCTCACTGAG--CA-CAGTCA-AAGACATT-GGTGATGGAA-TTGCATCGAGAGCTCT----TGTAATGTA-TGAT--GTTCTGT-GCAG-T-CCA-TAT-AC------T--ATACAAGCCGTTTAGTCCTA-GTTT-AG-ACC--TGATCCAAAGAGC-GA-TAC-G--------------GTGGA-G-AGAG----TATTT-----TTT-ATC-TGCATCCCCATTTGGCTTG-TT---GCT-ACCAC-TGTT-TTAT--TC--T-CA-AAGAGC--TTGAACATTTATCTT-G-AGCATGG--CCTATA-AT--GA-GTTATGAACGAAAGATTTAAAAGTTT--A-T-TATCGAAAATGACACC-T-AAAAAATTAATCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCCAAAGTCAATTGT-GGATCATCGTGATGTTTCCGTTTAGAGCAGAAATGCACACACGCAGTTTAAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAGGTCGT------TTTTTA-GAAC--TTCGGCCAGACTG---TTTATTTT-TATACTAAATAATGTGACCGATAAAATACTTCCTTGAGGAACGCCCATTTCTTGTTCGAAATTGTCTGAAAGTGT--TGAACCTAAGCGTACATTGAAATGTCTATTACT----TAGGAAATTCTGAATGAAGT-TTGGCAGATGTCCTTTAAGGCCAATATTGTGAAGATCTTTTAAGATACCGTATTTC
gi|10 : CCTTTGC-TTCG-GCT--GTAA--A--A---T-TG-------TTGCC-GCGTTGAGCAAGT-CT-GCAAGAGAA--AC-AT----------------------------GCA-GCGGCAAGC-GACTTTATTAAATT-GGTC--TTTTTCGATCCCGTACCT-----GTA-TT-AAGT-TCAA-TCGTAGAATGT------TT-----GGTCTGTTTTTTATTTCGAAG-A---T-GTTTGGTT--GA-AAA-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TATTTCAGCAAAGGATGA-TGTGT-CTACCTT-A-G-GTT-TTAT-T-AA-----------T-ATC---CATG--GCGGT--TATTTCAGAGCATA-AT----TG-GGTGTTTT------TACAA-A--TA--TTC-------AAA-GTAAGTCAGAAGCCCGTA--TGTc
gi|11 : GGAAGTCGTGTTTTTTTTTTT-T-AC--TTTAGCCAGAATG---TTTATTTG-CATACTAGATAAAGTAATCGATAAAATATTTCCTTGTGGAACGCCCAATTCTTGTTCTAAATTATC-GA----GT--TTATACTAAGCATACATTGAAACTTCTATTACTTTGGGAAAAAAT----GACGAAGTCCTGGTAGATGCCCTTTATAGCCAATACAATAAAGATCTTTT
gi|12 : G----AAAGTTC--A-T-TATCAAAAATGACACC-T-AATATCTTAACTTC-TTTTACTACTTTAATT-GG-AG-CCCCATGTAATGACAGCTGC-AGATCATCGTGATGTTTCCGTTCAGAACAAAAATGCACACATGCAGTTTTAATTCTGGAAA-TGTAAACCCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTTGACATAGCTGTAA-----TTTTTGCTCTGTGGAATTCATA----TTTTGGGATTTATAACAGAGAACAAATTC--ATCAACATAGA--TACTTTCATGGAAGTCttttttttttttcagtgttgcagtgttcgagctagtgagtatggcaaatgctgctggaaacatggctctgttgagtgt
gi|13 : acTA--GACTTTCA-AGAAGTTGT------TTTAT--T-AC--TTTAGCCAGAATG---TTTATTGT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATTCTTGTTC----------AA----GT--TGATCCTAAGCATACATTAACATTTCTATTATC----AAAAAAAT----GATGAACT-CTGATAGATGCCCTTTGTGGCCAATTTAATAAAGATCTTTT
gi|14 : TTTTA-TTAC--TTTAGCCAGAA-G---TTTATTGTATATACTAGAATATGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATCTTTGTTCAGA--------------T--TGATCT--AGCATACATTAACATTTCTATTATC----AAAAAAAT----GAT-AACT-CTGATAGATG-CCTTTGTGGCC-ATTTAATAAAGATCTTTTggtttttttcagtattgcagtgttcgagttcgtgagtatggcaagtgctgctggaaacatggctctgttgagtgta
gi|15 : gTATTATAAAATG--AGTTTTATTCTG---C------ATT-GA-GAAGTGGTTTGTT---T---G-C-CT----------AA-ACTGTC--TACAGG-AGA-AGTTCA-AAAACTC-CCGTG--CA-CAGTCG-AATACCT----TGATGGA--TTACATTGAGAGCCT------------TA-TGAT--GTTCT-T-GCCGCT-ggtttttttcagtattgcagtgtcgaggttctgtaggtatggcaagtgctgctggaaacatggctctgttgagtgt
gi|15 : gAGAGC-GA-TGCAG--------------ATGCA-GTAGAG----TATTG-----T---ATC-TGC-TACC-GTTTTG--TG-TT--CGCT-ACAAA-TATTATTA---TA--T-C--AAGATCCTTTGTACATTTCTCTTTG-AGCATTG--C-TATA-gagagcgatgcagatgcagtagagtattgtatctgctaccgttttgtgttcgctacaaatattattatatcaagatcctttgtacatttctctttgagcattgctatata
gi|16 : gtattataaaatgagttttattctgcattgagaagtggtttgtttgcctaaactgtctacaggagaagttcaaaaactcccgtgcacagtcgaataccttgatggattacattgagagccttatgatgttcttgccgctgCCTTTGC-TTTG-GCT--GTAT--A--AG--T-AG-------TTGCC-TCGTTTGG-AAGT-CTTGTA-GAGAAT-AC-ATTGT-------TAGC-TA-TTT---C-T-GCA-GCAGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-AT--CT-----GTA--T-AAATATTAA-TCGTAGAATG-------TT----TGGCCTGCTTT--ATTTCGAAT-AT--T-TTTTGTTT--GA-AAA-AGTGta
gi|17 : AG--TGA-TGTGTTCTACTTT-AGGAGTT-TTGG-TAGAAGGATGTAGTCTGTTCGGGCATGCGACGGG--TGTTTCAGAATA-ATGTCTAGTGTTGTG-TCT------TA--A-A--GACTTCC-------AAAGGTAAGTTAGACTCCTGTA--TGTG-TTTTTTTAAATTGTAAACCA-ATTGGTTTTA-TACA-TTTCT-TG--TTTTTTACC-ATA---TAAATCTTC-AGACTGCG-GATGGAA--A-CGCAGT-CAAATACAGGGTTGTC-------A-GC-TTTTGA--TT-aataacatttgcagttcaaacatccggaggtttgctcatcgcggtgttattaatttgacagtgtagtctttc
gi|18 : atTTAAGTTT-AAGAAC-ATATTATTA--GGCTAATTTAATTCTA--------------AA-GAGGAGGTTCGTT---T---G-CTCCC-ACACA-AAAA-ATTG-C--TGCTGT-GGATGGTTGG-AACGTTC-CAGAG--CT-AAGCCG-TGGACCCT-GATGATGGA--TCGCGTAAAGTGC-TT----T--AAGAAC-TGAC--ATTCT-T-ACt
gi|19 : AAAAAGACGCC-C-AAAAACATAACCTCCTTT-ACGACGTTAATT-GG-AG-CTCCATCTAATGCCAATTGC-GGATCATCGTGATGTTTCCGTTTGGAACAGAAATGCACACACTCGGTTTTAG---TGGAAAATTTAAAACCATTTGCATTAGCCCAG-TTT--TGGATTTCGTTTAGACATaatataaccataatctaaaatgggatcaatgacacataaataatgttaatttcatctctaccattt
gi|2 : TTTGC-TTCGCTC---GTAA--ACGAA--TCTGCGGGGGTCCGCC-TCGTTTGG-AAGTGCTTGTA-GAGAAC-ACAATC--------GTGTC-TA-TTTA--CGT-GCA-GC-GCA-GC-GAC-TTA-T---TT-GGTCGGCCTT--GAATC-GC--CTCGTTAGTA----AAATATCAA-TCGTAGAATGT------GT------GCCTGTTTT--TATTCGAAGAA---TATTTTGTTT--GA-AAA-CGCGGGAATT--TGTTTCGAATCTGCTTA--TA--TCAG-AAAG--TGA-TGTG--CTACCTT-A-G-GTG-TTGT-TAAT-----------T-TCC---TAT---GC--G--TATTTCAGAACA-T-GT----TGAG--G-TTT------TAC-ATAACTA--TCC-------AAAGGTCAGTCA-AGTCCCATAATTGTG--TTTT--AA-TCGTAAA-CA-ATTTGTTTAAGTACA-TTTCTCTG--TATTGT--CAATAGG-T--GTCTTC-AAACT-CGAGATGGAA-GA-CGCAGT-CAAATGCAGGG-TGTCGGTGGTTA-GC--GTTAATTTT-AAGTA-TGTATTGTAAAA-G--AG-TTTATTCTA---CGT--AGATC-TA-GAGGTGGTTCGTT---T---G-C-TCA-ACATA-C-AA-ACTGTC--TACAGG-AGA-AGTTGA-AAAGCTC-CTGAAGCCACCAGTCGCAAGACCTT-GGTGATGGA--TTGCATCAAG-GCTTTAATAT--AATATG-TGATTGATTC--T-GCCGCTCCCATTATCAC------T--ATACATGCCGTA-AGT-CTACGTTTCAGAACCTAGAATC-AAAGAGCAGA-TACAG--------------GTTGC-G-AGAGTAGATATTC-----TTTAATC-T-C-T-TCCATTTGG--TGTTT--TGCT-ACCAC---TT-TTAT--TATTT-CA-AGAAGCC-TTGAA-ATGTTTCTTTGCAGCATTG--C-TAT--AT--GAGGTTGTGAACG----------AAGTTCTGG-T-TATCGAAAATGACA
gi|20 : TTTGC-TTCG-GCG--GTAT--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CGTGTA-GAGAAT-AC-ATCGT------GTG-A-TA-TC-A--C-T-GCT-GTAGCA-GC-GACTTCATT---TT-GGTC--TTTT--GATCT-AT--CT-----ATA-T---------AA-TTG--------------TT----TGGACTGTTTT--ATTTCGGAG-AG--T-GTTTGCTT--GACAAC-A
gi|21 : t-------TTACT-TC-TTCGG-AAGT-CGTGTA-GAGAAA-AC-GTTGTTTAATTGTGAC-T--TCTAAAC-T-------------C-GACTTTATT---TT-GGTA--TTTT--GAACC-AT--AT-----GT-------ATACCAA-TTGTACGGTGTACAATATT----TAAACTGTTTT--ATTTTGGAa
gi|22 : CTTTGCCTTCGGCCT--GGAA--A--AA--T--G-------TTGCC-TCATTTGG-AAG--CTTACC-GAGAAC-AC-AT---------GT-TC-TA-T-TA--C-TTGCA-GCGGCA-GC-GACTTTATT---TT-GGTCT-TTTT--GATCC-GT--CT-----GTA-TTAAAATATCAATTCGTAGA---T------TT----TA-------TT--ATTTCCTA--A---T-TTTTtaacatatctctcaataacaaac
gi|23 : TAGCTGTAA-----TTTTCTCTCAATAGAGTTTACG----TTTTTGGATTTATAAGATATCAAGAAGTC--ATCGACATAAAGTGAC--GGATCGATGTCCG------CTGTTA-A-ACATTTTA-C---AATGCTATTTATTTT-CAAACTA
gi|24 : cacttttccaatttcttgagggtTTGC-TTGACA----GTAATAG--AA--T-TG-------TTGCC-TCGTTTGT-AAG--CGCGCA-GAGAAC-ACGGTCGT------GTA--------TA--C-T-GCC-GC---------ACTTCAAT---CT--GTC--TTTT--AATCC-AT--CT------TA--T-AAATATCAA-TCGTAGAA--T------TC----TGG
gi|25 : TTA-ATTGTAAGAAT--TTTTTTATTCAA---CCT--AAATC-GA-GAGGTGATTCGTT---T---GAC-TCA-ACATATC--A-ACTATC--TTCAGA-CGA-GGTTCGAAAAGCTC-CCGTG--CA-CTGTGA-GAGTGCTT-GATGGTacacagcttttgcttgaaaa
gi|26 : gtattaccttGG--TATTTCAGAACA-T-GA----TG-AGTG-TTT------TAC-A-A--TA--TCC-------AAAAGTAAGTCAGAATCCTGTA--TGTGCTTCTT--AATTCGAAAGCCC-ATTGCTTTTA-AACA-TTTCT-TGT-TTTTGT--C-ATATA-C--ATCTTC-A
gi|27 : ACTTAACCTC-TTT------------T-GG-AG-TCCCATCTAATGTCAACTGT-GGATCATCGTGGTGTTTCCGTTTCGAGCAGAAATGCACACACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGC
gi|28 : TTCAGATTT-CTCAAATAGTTCAA-AATA--TAA-------CTACTTTTAG---TT-TTAG-TAA----------------------TG--GTGGGATCATTT----------G------GTGGTA-TTTCCAGTTTAC-A-A--TA--TCC-------AAAGGCAAGTTAGAATCCTGTA--TGTG-
gi|29 : A-TTTCT-TG--TTTT-------------------TC-AAACTCCA-GATGGAA--A-CGCTGTC-AAATGCAGGGTTATCCAT-ATTA-GC-TTTTAA--TT-
gi|3 : attTTTT--A-TTTGTAGACCG-ATTGATTTTA-TATA-TTTCT-TAACTTTTG-------A-A----ATCTTC-AAACTGGG-GATAAAA-AAATACAGTC--AATGCTAGATTGTCAGT-ATTA-GC-TTTCAA--TTGAACTAT-ATATTGTAAGGTA--ACTGTGATTCCA---TGT--AGGCC-GA-GAAGTGATT--TT---------C-TCC-ACATA--AAA-ACTACC--TATCAG-AGA-GGTTCGAAAAGCTC-CT------A-CGATAA-AAGACCTT-GATGATGGA--TTACATCAAGAGC-TT----T--AATATA-AGAT--GTTAT-T-GCCGCG-TCA-TAC-CC------T--AAAC-AGCTG-T-AGTTCTC-GATT-AG-ACC--GGATT-AGAAAGC-GA-TACAA--------------ATGTA-GAAGAG----TATTT-----TT--ATC-TGT-TCCCCATTTTG--TG-TTTCCGGT-TTAA----TT-TGATCATA--T-CA-AA-AGCCTTCATACATTTCTCATTA-AGTACTG--C-TATACGTA-GA-ATT--------AAGG----AAAGTTC--ATT-TATCAAAAATTGCAAG-TAAAGAATTTGACCTC-CTT-Att
gi|3 : taa-ACAACTTTACTT-GGGAG-GGACATCTCATTGCAATTGTTGGAT-----------TCCTCTTTA------------ATGTATGCGGTTTTA----TGGAAAACGCAAAATCGTTAACATCATTGCAAGTTTCCTGGATTATGTCTGGACATACATGTAACGTAATTTTCGTTCAATGGAATTCAatttgctgccgtaaaacggctgaaattttgccaacaactttacttgggagggacatctcattgcaattgttggattcctctttaatgtatgcggttttatggaaaacgcaaaatcgttaacatcattgcaagtttcctggattatgtctggacatacatgtaacgtaattttcgttcaatggaattca
gi|30 : taattttatttgtagaccgattgattttatatatttcttaacttttgaaatcttcaaactggggataaaaaaatacagtcaatgctagattgtcagtattagctttcaattgaactatatattgtaaggtaactgtgattccatgtaggccgagaagtgattttctccacataaaaactacctatcagagaggttcgaaaagctcctacgataaaagaccttgatgatggattacatcaagagctttaatataagatgttattgccgcgtcataccctaaacagctgtagttctcgattagaccggattagaaagcgatacaaatgtagaagagtatttttatctgttccccattttgtgtttccggtttaatttgatcatatcaaaagccttcatacatttctcattaagtactgctatacgtagaattaaggaaagttcatttatcaaaaattgcaagtaaagaatttgacctccttaatttgctgccgtaaaacggctgaaattttgccaCAG--------------GTGGA-GGAGAG----TGTTT-----TTT-ATC-TGA-CCCCCATTTTG--TG-TT--CGCT-ACAAC-T-T
gi|32 : -ATA--TGTTTCAGATTT-CTTA--TA-TTC----AAA--TAA-TATGT-CTACTTT--TA-GTT-TTAG-TAAgtatt
gi|33 : AGATGTCCTTTAAGGCCAACATTATGTAGATCTTTTAAGATACCGTATTTCtt
gi|34 : TCAATGGAATTCATA----TTTTTGGATTTATAATAT-GAAT----TTTAATCAATAAATA--GAtat
gi|35 : ACTGCA-GATGGAA-AA-CGTAGT-CAAATGCAGGATTGTCCA----TA-GCATTTTAA--
gi|36 : -TACAG--------------ATGTA-GGAGAG----TATTT-----TT--ATC-TGC-TCCCCATTattt
gi|4 : --AGATTTATTCTAGCTCGT--AGATC-AA-G--GTA-TTCGTT---T---G-T-CTC-A-ATA-CACATACTTTT--TAAAGG-AGA-GGTTCG-AATGTTC-CTGTA--CA-CAGTCG-AAGAC---------------TTGCATCGAGAGCTTT-------AATGTA--GAT--GTTCT-T-GCCGCT-CCA-TAT-ACATGTACT--ATACA-GCCGT--AGTT-TA-ATTT-AG-ACC--GAATT-TGAGGGC-GA-TACAGAGGTACATGTACATGTATA-T-GGGA----TATTTCTTTTTT--A-C-TGC-TCCCAATTTT---TC-TT--TGCA-ACAACGT-TTATTAT---A--T-CA-T-GAGGTTTTGTACATTTCTCTTTG-AGCATTG--C-TACATGT--AT-ATCAGGAATAAAAAG----AA-GTCT--A-T-AATT-AAAATGACACC-T-AAGAACGTAAC----TCT-A-AACTTTAATT-GG-AG-TACCATCTAACTCCAGTTGC-GAATCAGCATGGTGTTTCCGTTTACAAGAGAGATGAATGCATGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATTGTCTCAA-ATT--TGAACTGTGTTTATACGTAGCTGTAG-----GTTTTGCTCAATGGAATTCATATATTTTTTTAAATTTATATCGTCAAAGAAAAT---ATCAACA----------TCCATGAAAGTCGT------TTTAGA---AT--TTTAGTTAAAGTG---TTTACTT
gi|5 : A-TACA-TTTCT-TG--TTTT-------TG-C-T---TCTTCAAAACTGCG-GATGGAATAA-CGCAGT-CAAATGCAGGGTCGTCCGG-GGTA-GA-TTTTAAT-TT-AAGTA-TATA-TGCAAAAGG--AG-TTTATTCAA---CGTAGAGATCTAA-GAGGTGATTCGTT---TAACG-C-TCA-ACATA-C-AA-ACTGTC--TACAGGTAGA-AGTTCG-AAAGCTC-CTGAG--CA-CAGTCG-AAGACCTTGGGGGATGGATTTTGCATCGAGAGCTTT----T---ATATATTGAT--GTTCT-TGGCCGCT-CCA-TATAAC------TAGATAC-AGCCG-T-AGT-CTA--TTT-GA-CCC--TGATC-AAAGAGC-GAGTACAG--------------GTGGAGG-AAAG----TATTT-----TT--ATCATGC-TCCCCA-TTGG--TG-TT--TGCTAACCAC---TT-TTAT--TA--T-CATCAGAGCCTTTGAACAATTTTCTTTG-AGCAATGGCT-TATA-ATGAGA-GTT-----TGAAACG----AAAGTTT--A-TCTAT-GAAAATGATACCAC-AAGAACTTAAACTCTTTT-ACA--CTTAATTGGG-AGTTCCCATCTAAT
gi|6 : a-TCGTTTGG-AAGT-CTTGCA--AGGAC-AG-ATCAT------GT-TC-TA-T-TA--C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA-T--AAATATCAA-TCGTAGAATGT------TT-----GGCCTGTTTT--ATTTCGAAG-AA--T-TTTTG-TTTGAA-AAC-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTT-AGG--TT-TTAT-TAA------------T-TTT---CATG--GTGG---TATTTCAGAGCA-A-GT----TG-AGTG-TTT------TAC-A-A--TA--CCCGGTATTCAAAGGCAAGTCAGAATCCCGTA--TGTG-TTTTG--AACTCGTAAACCA-ATTGATTTAA-TATA-TTTCT-TGT-TTTTGT--C-ATA-G-T--ATCTTC-AAACTGCG-GATGGAA-GA-CGCAGT-CAATTGCAGGGTTGTCGGT-GTTA-GC-TTTTAA--
gi|7 : -GATGGAA-GA-CGCAGTC-AAATACAGGGTTGTCAGT-ATCA-GC-TTTTGA--TT-TAACAATGTATTGTAGAAGG--AATTTTATTCTT---CGT--AAATC-GA-GAGGTGGTTCATT---T---G-C-CTCAACATA-C-AG-TCTGTC--TACAGG-AGA-AGTTTGAAAAGTTC-CTGTG--CA-CAGTCG-AAGACCTT-CGTGATGGA--TTGCATCGAGGGC-TT----T--AATATA-AGAT--GTTCT-T-GCCGCC-CCA-TAT-AC------T--ATAC-ATCCA-T-AGTCA-A-GTTT-AG-ACC--GGATT-AGGGAGC-GA-TACAG--------------ATACAGG-AAAT----TATTT-----TT--ATC-TGC-TACCCAATTTG--TG-TT--CGCT-ACCAC---TT-TTAT--TA--TATG-AAGAGCCTTTGTACATTTCTCTTTG-AGCATCG--C-TAT
gi|8 : TTCTGGGAATTTTGAAACCATTTACATCAGTCCAA-TTT--TGGATTTTATTTAGACATAGCTGTAG-----TTTTTGCTCAACGGAATTCAT-----TTTTTTTATTTATAACATAAAACAAAGTC--ATCAACATATA--GACTTCCATGGAAATC-T------TTTTTAGT-AC--TTCAGCCAGACTG---TTTATTTT-TATACCAAATAGTGCAACTGATAAAATAC-----TTT-------CCATTTCTTGTTCGAAATTGTCTGAAA--GTGGTGATCCTAAGCGTACTTTGATATGTCTATTGCgta
gi|9 : TTTAC-TTCG-ACA--GTAA--A--AT--G-TG-------TTGTT-TCGTTTGG-AAGT-CGTATA-GAGAAC-AC-ATCGT------TTG-C-TA-T-TA--C-T-GCA-GCGGCT-GC-AACTTTATT---TT-GGTC--TTTT--GATCC-AT--CT-----GTA-T--AAATATCAA-TTGTAACATGT------TTGGAATAGATTGTTTT--ATTTCGGAG-AATTT-TTTCC-TT--GA-AAATAACGAA-ATT--CGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACTTT-A-G-GTT-TTAG-T-AG-----------T-TTC---CATG--GT-GG--TATTTCAGAACA----T----CATGATA-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTTAG--TTCTCTA--TGTGCTTCTT--AACTCG--AAGCGCA--GATTTCA-TACA-TTTTT-T---TTTTGT--ttacgcatctcgaatataggtttcaagtactggtcgattgtgcttctatttattctgaagccaaattgtatatctgttttaaaaaacgttatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|31 ): TTTGTACATGTTCTTTTTTGGGACTGTGATTGCGTACAAAAAGGCGAAGATAACATT
Alignments
lowQualScore : 222222 1111111 1 444444444444444444444444 11111 2222 1111111111111 222222 2 1 1 11111 33333333333333333333 222222222222 111111 1111111 1 11 44444444444444444 11 11111 11 1 11 1111111 111 1 11 11111111111 1 111111111 11 222 111111 22222222222222 111 11111 11 222 1 22222 3333333333333333 1 11111 11111 111 111111 2222 111 3333333333333333 11 22222 2222 1
lowQualScore : 5 777777 66 66 999 55 4444444 4 4 99 0 4 44 2 333333333333333333333333 4 8 4 5 4 4 777 4 99 55 4 55 00000 6666 4 0 5555555555555 2 66 888888 5 2 5 1 99 99 5 77 1 5 777 5 55 99999 5 66 3 88888888888888888888 77 6 66 1 333333333333 5 444444 5 5 66 66 6666666 66 1 999 5 1 44 88 1 5 4 4 00 55555555555555555 5 4 4 00 11111 4 4 11 0 55 0 4 66 2 777 1 66 4 4 0 2222222 4 4 88 555 4 66 4 4 3 4 2 66 4 4 4 0 11 2 99999999999 88 66 5 5 5 6 3 999999999 99 555 666666 6 6 99 6 5 5 66666666666666 1 999 9999 11111 55 4 4 1 66 5 999 5 1 777 1 888888 5 55 0 1 1 5 77 5 00000 8 1111111111111111 9999 6 44 999 1 5 222 5 5 66 1 6 2 0 22 1 6 99 66666 55555 3 22 1 000 3 1 77 3 2 999999 4444 77 000 6 6 1 0 3 1 9999999999999999 11 0 1 0 55555 1111 2 1 0 6 1 0 1 1
lowQualScore : . ...... .. .. ... .. ....... . . .. . . .. . ........................ . . . . . . ... . .. .. . .. ..... .... . . ............. . .. ...... . . . . .. .. . .. . . ... . .. ..... . .. . .................... .. . .. . ............ . ...... . . .. .. ....... .. . ... . . .. .. . . . . .. ................. . . . .. ..... . . .. . .. . . .. . ... . .. . . . ....... . . .. ... . .. . . . . . .. . . . . .. . ........... .. .. . . . . . ......... .. ... ...... . . .. . . . .............. . ... .... ..... .. . . . .. . ... . . ... . ...... . .. . . . . .. . ..... . ................ .... . .. ... . . ... . . .. . . . . .. . . .. ..... ..... . .. . ... . . .. . . ...... .... .. ... . . . . . . ................ .. . . . ..... .... . . . . . . . .
lowQualScore : 0 999999 99 99 111 44 4444444 0 0 77 6 0 77 0 000000000000000000000000 0 0 0 7 0 0 000 0 55 55 0 55 00000 6666 0 7 6666666666666 9 11 444444 0 9 7 4 99 22 7 99 4 7 111 0 11 22222 0 00 2 77777777777777777777 99 6 99 1 222222222222 0 444444 0 0 99 99 2222222 99 4 333 3 7 44 44 0 0 4 4 66 88888888888888888 0 4 4 99 99999 4 4 00 0 99 9 5 11 0 888 1 11 4 4 9 0000000 4 4 33 666 4 11 4 4 3 4 6 11 4 4 4 9 99 2 00000000000 66 99 0 0 7 7 3 333333333 00 777 333333 7 7 22 7 7 0 11111111111111 0 444 4444 11111 00 4 4 1 99 0 111 0 0 444 4 111111 7 99 1 4 0 7 99 7 33333 0 2222222222222222 3333 7 77 333 4 0 444 7 7 11 0 7 5 7 44 7 7 22 77777 88888 2 77 0 222 5 6 99 2 5 222222 0000 99 000 7 4 4 6 8 4 8888888888888888 00 8 0 6 55555 2222 5 0 0 4 4 8 4 4
consensus : CCTTTGC-TTCGCGCT--GTAA--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CTTGCA-GAGAAC-AC-ATCGT------GTGTC-TA-TCTA--C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA-TT-AAATATCAA-TCGTAGAATGT------TT----TGGCCTGTTTT--ATTTCGAAG-A---T-TTTTG-TT-GAAAA-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTT-AGG-GTT-TTAN-TAAA-----------T-TTC---CATG--GCGGG--TATTTCAGAGCA-A-GT----TGTGGTG-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTCAGAATCCCGTA--TGTG-TTTTT--AACTCGTAAACCG-ATTGATTTNA-TACA-TTTCT-TG--TTTT-GT--C-ATA-G-T--ATCTTCAAA-CTGCG-GAT-GGAA-GACGCAGTCAAATGCAGGGTTGTCCGT-GTTA-GC-TTTTAA--TT-AAGTATTATATTGTAAAAGG--AGTTTTATTCTA---CGTAGA--TC-GA-GAGGTGGTTCGTT---T---G-C-CCC-ACATA-CAAA-ACTGTC--TACAGG-AGA-GGTTCG-AAAGCTC-CTGNG--CA-CAGTCG-AAGACCTT-GGTGATGGA--TTGCATCGAGAGCTTT----T--AATATA-TGAT--GTTCT-T-GCCGCT-CCA-TAT-AC------T--ATACAAGCCGTT-AGTCCTA-GTTT-AG-ACC--GGATC-AGAGAGC-GA-TACAG--------------GTGNA-G-AGAG----TATTT-----TT--ATC-TGC-TCCCCATTTTG--TG-TT--CGCT-ACNAC-T-TT-TTAT--TA--T-CA-AAGAGCCTTTGNACATTTCTCTTTG-AGCATTG--C-TATA-AT--GA-GTTATGAACGAAAGG----AAAGTTC--A-T-TATCGAAAATGACACC-T-AAGAACTTAACCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCTAATGNCAATTGC-GGATCATCGTGATGTTTCCGTTTAGAACAGAAATGCACGCACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAAGTCGT------TTTTTA-T-AC--TTTAGCCAGAATG---TTTATTTT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAANGCCCAATTCTTGTTCGAAATTGTCTGAAA--GT--TGATCCTAAGCGTACATTGANATTTCTATTACC----GAAAAAAT----GATGAANT-CTGGTAGATGCCCTTTATGGCCAATATAATAAAGATCTTTTAAGATACCGTATTTC
Reference ( family-223 ) : CCTTTGC-TTCGCGCT--GTAA--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CTTGCA-GAGAAC-AC-ATCGT------GTGTC-TA-TCTA--C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA-TT-AAATATCAA-TCGTAGAATGT------TT----TGGCCTGTTTT--ATTTCGAAG-A---T-TTTTG-TT-GAAAA-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTT-AGG-GTT-TTAN-TAAA-----------T-TTC---CATG--GCGGG--TATTTCAGAGCA-A-GT----TGTGGTG-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTCAGAATCCCGTA--TGTG-TTTTT--AACTCGTAAACCG-ATTGATTTNA-TACA-TTTCT-TG--TTTT-GT--C-ATA-G-T--ATCTTCAAA-CTGCG-GAT-GGAA-GACGCAGTCAAATGCAGGGTTGTCCGT-GTTA-GC-TTTTAA--TT-AAGTATTATATTGTAAAAGG--AGTTTTATTCTA---CGTAGA--TC-GA-GAGGTGGTTCGTT---T---G-C-CCC-ACATA-CAAA-ACTGTC--TACAGG-AGA-GGTTCG-AAAGCTC-CTGNG--CA-CAGTCG-AAGACCTT-GGTGATGGA--TTGCATCGAGAGCTTT----T--AATATA-TGAT--GTTCT-T-GCCGCT-CCA-TAT-AC------T--ATACAAGCCGTT-AGTCCTA-GTTT-AG-ACC--GGATC-AGAGAGC-GA-TACAG--------------GTGNA-G-AGAG----TATTT-----TT--ATC-TGC-TCCCCATTTTG--TG-TT--CGCT-ACNAC-T-TT-TTAT--TA--T-CA-AAGAGCCTTTGNACATTTCTCTTTG-AGCATTG--C-TATA-AT--GA-GTTATGAACGAAAGG----AAAGTTC--A-T-TATCGAAAATGACACC-T-AAGAACTTAACCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCTAATGNCAATTGC-GGATCATCGTGATGTTTCCGTTTAGAACAGAAATGCACGCACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAAGTCGT------TTTTTA-T-AC--TTTAGCCAGAATG---TTTATTTT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAANGCCCAATTCTTGTTCGAAATTGTCTGAAA--GT--TGATCCTAAGCGTACATTGANATTTCTATTACC----GAAAAAAT----GATGAANT-CTGGTAGATGCCCTTTATGGCCAATATAATAAAGATCTTTTAAGATACCGTATTTC
gi|1 : CCTTTGC-TTCGCGCTATGTAA--A--AAGCT-TG-------TTGCTATCGTTTGG-AAA--CTAGCA-GAGAACTACGATCAT------ATGTCGTAGTCTA--C-TAGCAAGCGGCA-GCAGACTTTATT---TTCGGTC--TTTT--GATCC-GT--CT-----GTAATT-AAATATTAA-TGCTAGAATGTA-----TT----TGGCCTGTTAT--TCTTCGAA------T-TTTTG-TT-AAAAC-AGCGG--ATTGATGTT-CAGAATT--TTA--TA-T-CAA-AGA---TGAATGT-T-CTACCTT-AAG-GTTCTTATATAAA-----------T-TTC---CATG--GCAGG--TATT-CAGAGCA-A-GT----TGTGGTG-TTC------TAC-A-A--TA--TTC-------AAAGGCAAGTCAGAATCCTGTA--TGTG-TTTT---AACTCGTAA--CA-ATTGATTTAA-TACACTTTCT-TG--TTTT-GT--C-ATA-GGT--ATCTTCAA--CTGCG--AT-GGAA-GACGCAGTAACA-GCAGGGTTCTGCAT-GTTAAGC-TTTTAA--TT-AAGTATTATATTGCAAAAGG--AGTTTTATTCTA---CGTAGA--TC-AATAAGGTGGTTCGTCGTAT---A-C-CTC-ACATT-CAAA-ACTGTCCATACAGG-AGA-TTTCTG-AAAGCTCACTGAG--CA-CAGTCA-AAGACATT-GGTGATGGAA-TTGCATCGAGAGCTCT----TGTAATGTA-TGAT--GTTCTGT-GCAG-T-CCA-TAT-AC------T--ATACAAGCCGTTTAGTCCTA-GTTT-AG-ACC--TGATCCAAAGAGC-GA-TAC-G--------------GTGGA-G-AGAG----TATTT-----TTT-ATC-TGCATCCCCATTTGGCTTG-TT---GCT-ACCAC-TGTT-TTAT--TC--T-CA-AAGAGC--TTGAACATTTATCTT-G-AGCATGG--CCTATA-AT--GA-GTTATGAACGAAAGATTTAAAAGTTT--A-T-TATCGAAAATGACACC-T-AAAAAATTAATCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCCAAAGTCAATTGT-GGATCATCGTGATGTTTCCGTTTAGAGCAGAAATGCACACACGCAGTTTAAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAGGTCGT------TTTTTA-GAAC--TTCGGCCAGACTG---TTTATTTT-TATACTAAATAATGTGACCGATAAAATACTTCCTTGAGGAACGCCCATTTCTTGTTCGAAATTGTCTGAAAGTGT--TGAACCTAAGCGTACATTGAAATGTCTATTACT----TAGGAAATTCTGAATGAAGT-TTGGCAGATGTCCTTTAAGGCCAATATTGTGAAGATCTTTTAAGATACCGTATTTC
gi|10 : CCTTTGC-TTCG-GCT--GTAA--A--A---T-TG-------TTGCC-GCGTTGAGCAAGT-CT-GCAAGAGAA--AC-AT----------------------------GCA-GCGGCAAGC-GACTTTATTAAATT-GGTC--TTTTTCGATCCCGTACCT-----GTA-TT-AAGT-TCAA-TCGTAGAATGT------TT-----GGTCTGTTTTTTATTTCGAAG-A---T-GTTTGGTT-GAAAA-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TATTTCAGCAAAGGATGA-TGTGT-CTACCTT-A-G-GTT-TTAT-T-AA-----------T-ATC---CATG--GCGGT--TATTTCAGAGCATA-AT----TG-GGTGTTTT------TACAA-A--TA--TTC-------AAA-GTAAGTCAGAAGCCCGTA--TGTc
gi|11 : GGAAGTCGTGTTTTTTTTTTT-T-AC--TTTAGCCAGAATG---TTTATTTG-CATACTAGATAAAGTAATCGATAAAATATTTCCTTGTGGAACGCCCAATTCTTGTTCTAAATTATC---GA--GT--TTATACTAAGCATACATTGAAACTTCTATTACTTTGGGAAAAAAT----GACGAAGTCCTGGTAGATGCCCTTTATAGCCAATACAATAAAGATCTTTT
gi|12 : G----AAAGTTC--A-T-TATCAAAAATGACACC-T-AATATCTTAACTTC-TTTTACTACTTTAATT-GG-AG-CCCCATGTAATGACAGCTGC-AGATCATCGTGATGTTTCCGTTCAGAACAAAAATGCACACATGCAGTTTTAATTCTGGAAA-TGTAAACCCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTTGACATAGCTGTAA-----TTTTTGCTCTGTGGAATTCATA----TTTTGGGATTTATAACAGAGAACAAATTC--ATCAACATAGA--TACTTTCATGGAAGTCttttttttttttcagtgttgcagtgttcgagctagtgagtatggcaaatgctgctggaaacatggctctgttgagtgt
gi|13 : acTA--GACTTTCA-AGAAGTTGT------TTTAT--T-AC--TTTAGCCAGAATG---TTTATTGT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATTCTTGTTC------------AA--GT--TGATCCTAAGCATACATTAACATTTCTATTATC----AAAAAAAT----GATGAACT-CTGATAGATGCCCTTTGTGGCCAATTTAATAAAGATCTTTT
gi|14 : TTTTA-TTAC--TTTAGCCAGAA-G---TTTATTGTATATACTAGAATATGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATCTTTGTTCAGA--------------T--TGATCT--AGCATACATTAACATTTCTATTATC----AAAAAAAT----GAT-AACT-CTGATAGATG-CCTTTGTGGCC-ATTTAATAAAGATCTTTTggtttttttcagtattgcagtgttcgagttcgtgagtatggcaagtgctgctggaaacatggctctgttgagtgta
gi|15 : gTATTATAAAATG--AGTTTTATTCTG---C----A--TT-GA-GAAGTGGTTTGTT---T---G-C-CT----------AA-ACTGTC--TACAGG-AGA-AGTTCA-AAAACTC-CCGTG--CA-CAGTCG-AATACCT----TGATGGA--TTACATTGAGAGCCT------------TA-TGAT--GTTCT-T-GCCGCT-ggtttttttcagtattgcagtgtcgaggttctgtaggtatggcaagtgctgctggaaacatggctctgttgagtgt
gi|15 : gGAGAGC-GA-TGCAG--------------ATGCA-GTAGAG----TATTG-----T---ATC-TGC-TACC-GTTTTG--TG-TT--CGCT-ACAAA-TATTATTA---TA--T-C--AAGATCCTTTGTACATTTCTCTTTG-AGCATTG--C-TATA-gagagcgatgcagatgcagtagagtattgtatctgctaccgttttgtgttcgctacaaatattattatatcaagatcctttgtacatttctctttgagcattgctatata
gi|16 : gtattataaaatgagttttattctgcattgagaagtggtttgtttgcctaaactgtctacaggagaagttcaaaaactcccgtgcacagtcgaataccttgatggattacattgagagccttatgatgttcttgccgctCCTTTGC-TTTG-GCT--GTAT--A--AG--T-AG-------TTGCC-TCGTTTGG-AAGT-CTTGTA-GAGAAT-AC-ATTGT-------TAGC-TA-TTT---C-T-GCA-GCAGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-AT--CT-----GTA--T-AAATATTAA-TCGTAGAATG-------TT----TGGCCTGCTTT--ATTTCGAAT-AT--T-TTTTGTTT-GAAAA-AGTGta
gi|17 : AG--TGA-TGTGTTCTACTTT-AGGAGTT-TTGG-TAGAAGGATGTAGTCTGTTCGGGCATGCGACGGG--TGTTTCAGAATA-ATGTCTAGTGTTGTG-TCT------TA--A-A--GACTTCC-------AAAGGTAAGTTAGACTCCTGTA--TGTG-TTTTTTTAAATTGTAAACCA-ATTGGTTTTA-TACA-TTTCT-TG--TTTT-TTACC-ATA---TAAATCTTCAGA-CTGCG-GAT-GGAA--ACGCAGTCAAATACAGGGTTGTC-------A-GC-TTTTGA--TT-aataacatttgcagttcaaacatccggaggtttgctcatcgcggtgttattaatttgacagtgtagtctttc
gi|18 : atTTAAGTTT-AAGAAC-ATATTATTA--GGCTAATTTAATTCTA--------------AA-GAGGAGGTTCGTT---T---G-CTCCC-ACACA-AAAA-ATTG-C--TGCTGT-GGATGGTTGG-AACGTTC-CAGAG--CT-AAGCCG-TGGACCCT-GATGATGGA--TCGCGTAAAGTGC-TT----T--AAGAAC-TGAC--ATTCT-T-ACt
gi|19 : AAAAAGACGCC-C-AAAAACATAACCTCCTTT-ACGACGTTAATT-GG-AG-CTCCATCTAATGCCAATTGC-GGATCATCGTGATGTTTCCGTTTGGAACAGAAATGCACACACTCGGTTTTAG---TGGAAAATTTAAAACCATTTGCATTAGCCCAG-TTT--TGGATTTCGTTTAGACATaatataaccataatctaaaatgggatcaatgacacataaataatgttaatttcatctctaccattt
gi|2 : TTTGC-TTCGCTC---GTAA--ACGAA--TCTGCGGGGGTCCGCC-TCGTTTGG-AAGTGCTTGTA-GAGAAC-ACAATC--------GTGTC-TA-TTTA--CGT-GCA-GC-GCA-GC-GAC-TTA-T---TT-GGTCGGCCTT--GAATC-GC--CTCGTTAGTA----AAATATCAA-TCGTAGAATGT------GT------GCCTGTTTT--TATTCGAAGAA---TATTTTGTTT-GAAAA-CGCGGGAATT--TGTTTCGAATCTGCTTA--TA--TCAG-AAAG--TGA-TGTG--CTACCTT-A-G-GTG-TTGT-TAAT-----------T-TCC---TAT---GC--G--TATTTCAGAACA-T-GT----TGAG--G-TTT------TAC-ATAACTA--TCC-------AAAGGTCAGTCA-AGTCCCATAATTGTG--TTTT--AA-TCGTAAA-CA-ATTTGTTTAAGTACA-TTTCTCTG--TATT-GT--CAATAGG-T--GTCTTCAAA-CT-CGAGAT-GGAA-GACGCAGTCAAATGCAGGG-TGTCGGTGGTTA-GC--GTTAATTTT-AAGTA-TGTATTGTAAAA-G--AG-TTTATTCTA---CGTAGA--TC-TA-GAGGTGGTTCGTT---T---G-C-TCA-ACATA-C-AA-ACTGTC--TACAGG-AGA-AGTTGA-AAAGCTC-CTGAAGCCACCAGTCGCAAGACCTT-GGTGATGGA--TTGCATCAAG-GCTTTAATAT--AATATG-TGATTGATTC--T-GCCGCTCCCATTATCAC------T--ATACATGCCGTA-AGT-CTACGTTTCAGAACCTAGAATC-AAAGAGCAGA-TACAG--------------GTTGC-G-AGAGTAGATATTC-----TTTAATC-T-C-T-TCCATTTGG--TGTTT--TGCT-ACCAC---TT-TTAT--TATTT-CA-AGAAGCC-TTGAA-ATGTTTCTTTGCAGCATTG--C-TAT--AT--GAGGTTGTGAACG----------AAGTTCTGG-T-TATCGAAAATGACA
gi|20 : TTTGC-TTCG-GCG--GTAT--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CGTGTA-GAGAAT-AC-ATCGT------GTG-A-TA-TC-A--C-T-GCT-GTAGCA-GC-GACTTCATT---TT-GGTC--TTTT--GATCT-AT--CT-----ATA-T---------AA-TTG--------------TT----TGGACTGTTTT--ATTTCGGAG-AG--T-GTTTGCTT-GACAA-
gi|21 : t-------TTACT-TC-TTCGG-AAGT-CGTGTA-GAGAAA-AC-GTTGTTTAATTGTGAC-T--TCTAAAC-T-------------C-GACTTTATT---TT-GGTA--TTTT--GAACC-AT--AT-----GT-------ATACCAA-TTGTACGGTGTACAATATT----TAAACTGTTTT--ATTTTGGAcaa
gi|22 : CTTTGCCTTCGGCCT--GGAA--A--AA--T--G-------TTGCC-TCATTTGG-AAG--CTTACC-GAGAAC-AC-AT---------GT-TC-TA-T-TA--C-TTGCA-GCGGCA-GC-GACTTTATT---TT-GGTCT-TTTT--GATCC-GT--CT-----GTA-TTAAAATATCAATTCGTAGA---T------TT----TA-------TT--ATTTCCTA--A---T-TTTTtaacatatctctcaataacaaac
gi|23 : TAGCTGTAA-----TTTTCTCTCAATAGAGTTTACG----TTTTTGGATTTATAAGATATCAAGAAGTC--ATCGACATAAAGTGAC--GGATCGATGTCCG------CTGTTA-A-ACATTTTA-C---AATGCTATTTATTTT-CAAACTA
gi|24 : cacttttccaatttcttgagggtTTGC-TTGACA----GTAATAG--AA--T-TG-------TTGCC-TCGTTTGT-AAG--CGCGCA-GAGAAC-ACGGTCGT------GTA--------TA--C-T-GCC-GC---------ACTTCAAT---CT--GTC--TTTT--AATCC-AT--CT------TA--T-AAATATCAA-TCGTAGAA--T------TC----TGG
gi|25 : TTA-ATTGTAAGAAT--TTTTTTATTCAA---CCTAAA--TC-GA-GAGGTGATTCGTT---T---GAC-TCA-ACATATC--A-ACTATC--TTCAGA-CGA-GGTTCGAAAAGCTC-CCGTG--CA-CTGTGA-GAGTGCTT-GATGGTacacagcttttgcttgaaaa
gi|26 : gtattaccttGG--TATTTCAGAACA-T-GA----TG-AGTG-TTT------TAC-A-A--TA--TCC-------AAAAGTAAGTCAGAATCCTGTA--TGTGCTTCTT--AATTCGAAAGCCC-ATTGCTTTTA-AACA-TTTCT-TGT-TTTT-GT--C-ATATA-C--ATCTTCA
gi|27 : ACTTAACCTC-TTT------------T-GG-AG-TCCCATCTAATGTCAACTGT-GGATCATCGTGGTGTTTCCGTTTCGAGCAGAAATGCACACACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGC
gi|28 : TTCAGATTT-CTCAAATAGTTCAA-AATA--TAA-------CTACTTTTAG---TT-TTAG-TAA----------------------TG--GTGGGATCATTT----------G------GTGGTA-TTTCCAGTTTAC-A-A--TA--TCC-------AAAGGCAAGTTAGAATCCTGTA--TGTG-
gi|29 : A-TTTCT-TG--TTTT--------------------TCAAA-CTCCA-GAT-GGAA--ACGCTGTCAAATGCAGGGTTATCCAT-ATTA-GC-TTTTAA--TT-
gi|3 : attTTTT--A-TTTGTAGACCG-ATTGATTTTA-TATA-TTTCT-TAACTTTT-G-------A-A----ATCTTCAAA-CTGGG-GATAAAAA-AATACAGTC-AATGCTAGATTGTCAGT-ATTA-GC-TTTCAA--TTGAACTA-TATATTGTAAGGTA--ACTGTGATTCCA---TGTAGG--CC-GA-GAAGTGATT--TT---------C-TCC-ACATA--AAA-ACTACC--TATCAG-AGA-GGTTCGAAAAGCTC-CT------A-CGATAA-AAGACCTT-GATGATGGA--TTACATCAAGAGC-TT----T--AATATA-AGAT--GTTAT-T-GCCGCG-TCA-TAC-CC------T--AAAC-AGCTG-T-AGTTCTC-GATT-AG-ACC--GGATT-AGAAAGC-GA-TACAA--------------ATGTA-GAAGAG----TATTT-----TT--ATC-TGT-TCCCCATTTTG--TG-TTTCCGGT-TTAA----TT-TGATCATA--T-CA-AA-AGCCTTCATACATTTCTCATTA-AGTACTG--C-TATACGTA-GA-ATT--------AAGG----AAAGTTC--ATT-TATCAAAAATTGCAAG-TAAAGAATTTGACCTC-CTT-Att
gi|3 : taa-ACAACTTTACTT-GGGAG-GGACATCTCATTGCAATTGTTGGAT-----------TCCTCTTTA------------ATGTATGCGGTTTTA----TGGAAAACGCAAAATCGTTAACATCATTGCAAGTTTCCTGGATTATGTCTGGACATACATGTAACGTAATTTTCGTTCAATGGAATTCAatttgctgccgtaaaacggctgaaattttgccaacaactttacttgggagggacatctcattgcaattgttggattcctctttaatgtatgcggttttatggaaaacgcaaaatcgttaacatcattgcaagtttcctggattatgtctggacatacatgtaacgtaattttcgttcaatggaattca
gi|30 : taattttatttgtagaccgattgattttatatatttcttaacttttgaaatcttcaaactggggataaaaaaatacagtcaatgctagattgtcagtattagctttcaattgaactatatattgtaaggtaactgtgattccatgtaggccgagaagtgattttctccacataaaaactacctatcagagaggttcgaaaagctcctacgataaaagaccttgatgatggattacatcaagagctttaatataagatgttattgccgcgtcataccctaaacagctgtagttctcgattagaccggattagaaagcgatacaaatgtagaagagtatttttatctgttccccattttgtgtttccggtttaatttgatcatatcaaaagccttcatacatttctcattaagtactgctatacgtagaattaaggaaagttcatttatcaaaaattgcaagtaaagaatttgacctccttaatttgctgccgtaaaacggctgaaattttgccaCAG--------------GTGGA-GGAGAG----TGTTT-----TTT-ATC-TGA-CCCCCATTTTG--TG-TT--CGCT-ACAAC-T-T
gi|32 : -ATA--TGTTTCAGATTT-CTTA--TA-TTC----AAA--TAA-TATGT-CTACTTT--TA-GTT-TTAG-TAAgtatt
gi|33 : AGATGTCCTTTAAGGCCAACATTATGTAGATCTTTTAAGATACCGTATTTCtt
gi|34 : TCAATGGAATTCATA----TTTTTGGATTTATAATAT-GAAT----TTTAATCAATAAATA--GAtat
gi|35 : A-CTGCA-GAT-GGAA-AACGTAGTCAAATGCAGGATTGTCCA----TA-GCATTTTAA--
gi|36 : -TACAG--------------ATGTA-GGAGAG----TATTT-----TT--ATC-TGC-TCCCCATTattt
gi|4 : --AGATTTATTCTAGCTCGTAGA--TC-AA-G--GTA-TTCGTT---T---G-T-CTC-A-ATA-CACATACTTTT--TAAAGG-AGA-GGTTCG-AATGTTC-CTGTA--CA-CAGTCG-AAGAC---------------TTGCATCGAGAGCTTT-------AATGTA--GAT--GTTCT-T-GCCGCT-CCA-TAT-ACATGTACT--ATACA-GCCGT--AGTT-TA-ATTT-AG-ACC--GAATT-TGAGGGC-GA-TACAGAGGTACATGTACATGTATA-T-GGGA----TATTTCTTTTTT--A-C-TGC-TCCCAATTTT---TC-TT--TGCA-ACAACGT-TTATTAT---A--T-CA-T-GAGGTTTTGTACATTTCTCTTTG-AGCATTG--C-TACATGT--AT-ATCAGGAATAAAAAG----AA-GTCT--A-T-AATT-AAAATGACACC-T-AAGAACGTAAC----TCT-A-AACTTTAATT-GG-AG-TACCATCTAACTCCAGTTGC-GAATCAGCATGGTGTTTCCGTTTACAAGAGAGATGAATGCATGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATTGTCTCAA-ATT--TGAACTGTGTTTATACGTAGCTGTAG-----GTTTTGCTCAATGGAATTCATATATTTTTTTAAATTTATATCGTCAAAGAAAAT---ATCAACA----------TCCATGAAAGTCGT------TTTAGA---AT--TTTAGTTAAAGTG---TTTACTT
gi|5 : A-TACA-TTTCT-TG--TTTT--------TG-C-T---TCTTCAAAACTGCG-GAT-GGAATAACGCAGTCAAATGCAGGGTCGTCCGG-GGTA-GA-TTTTAA--TTTAAGTAT-ATAT-GCAAAAGG--AGTTT-ATTCAA---CGTAGAGATCTAA-GAGGTGATTCGTT---TAACG-C-TCA-ACATA-CAAA--CTGTC--TACAGGTAGA-AGTTCG-AAAGCTC-CTGAG--CA-CAGTCG-AAGACCTTGGGGGATGGATTTTGCATCGAGAGCTTT----T---ATATATTGAT--GTTCT-TGGCCGCT-CCA-TATAAC------TAGATAC-AGCCG-T-AGT-CTA--TTT-GA-CCC--TGATC-AAAGAGC-GAGTACAG--------------GTGGAGG-AAAG----TATTT-----TT--ATCATGC-TCCCCA-TTGG--TG-TT--TGCTAACCAC---TT-TTAT--TA--T-CATCAGAGCCTTTGAACAATTTTCTTTG-AGCAATGGCT-TATA-ATGAGA-GTT-----TGAAACG----AAAGTTT--A-TCTAT-GAAAATGATACCAC-AAGAACTTAAACTCTTTT-ACA--CTTAATTGGG-AGTTCCCATCTAAT
gi|6 : a-TCGTTTGG-AAGT-CTTGCA--AGGAC-AG-ATCAT------GT-TC-TA-T-TA--C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA-T--AAATATCAA-TCGTAGAATGT------TT-----GGCCTGTTTT--ATTTCGAAG-AA--T-TTTTG-TTTGAAAACAGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTT-AGG--TT-TTAT-TAA------------T-TTT---CATG--GTGG---TATTTCAGAGCA-A-GT----TG-AGTG-TTT------TAC-A-A--TA--CCCGGTATTCAAAGGCAAGTCAGAATCCCGTA--TGTG-TTTTG--AACTCGTAAACCA-ATTGATTTAA-TATA-TTTCT-TG--TTTTTGT--C-ATA-G-T--ATCTTCAAA-CTGCG-GAT-GGAA-GACGCAGTCAATTGCAGGGTTGTCGGT-GTTA-GC-TTTTAA--
gi|7 : -GAT-GGAA-GACGCAGTCAAATACAGGGTTGTCAGT-ATCA-GC-TTTTGA--TT-TAACAATGTATTGTAGAAGG--AATTTTATTCTT---CGTAAA--TC-GA-GAGGTGGTTCATT---T---G-C-CTCAACATA-C-AG-TCTGTC--TACAGG-AGA-AGTTTGAAAAGTTC-CTGTG--CA-CAGTCG-AAGACCTT-CGTGATGGA--TTGCATCGAGGGC-TT----T--AATATA-AGAT--GTTCT-T-GCCGCC-CCA-TAT-AC------T--ATAC-ATCCA-T-AGTCA-A-GTTT-AG-ACC--GGATT-AGGGAGC-GA-TACAG--------------ATACAGG-AAAT----TATTT-----TT--ATC-TGC-TACCCAATTTG--TG-TT--CGCT-ACCAC---TT-TTAT--TA--TATG-AAGAGCCTTTGTACATTTCTCTTTG-AGCATCG--C-TAT
gi|8 : TTCTGGGAATTTTGAAACCATTTACATCAGTCCAA-TTT--TGGATTTTATTTAGACATAGCTGTAG-----TTTTTGCTCAACGGAATTCAT-----TTTTTTTATTTATAACATAAAACAAAGTC--ATCAACATATA--GACTTCCATGGAAATC-T------TTTTTAGT-AC--TTCAGCCAGACTG---TTTATTTT-TATACCAAATAGTGCAACTGATAAAATAC-----TTT-------CCATTTCTTGTTCGAAATTGTCTGAAA--GTGGTGATCCTAAGCGTACTTTGATATGTCTATTGCgta
gi|9 : TTTAC-TTCG-ACA--GTAA--A--AT--G-TG-------TTGTT-TCGTTTGG-AAGT-CGTATA-GAGAAC-AC-ATCGT------TTG-C-TA-T-TA--C-T-GCA-GCGGCT-GC-AACTTTATT---TT-GGTC--TTTT--GATCC-AT--CT-----GTA-T--AAATATCAA-TTGTAACATGT------TTGGAATAGATTGTTTT--ATTTCGGAG-AATTT-TTTCC-TT-GAAAATAACGAA-ATT--CGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACTTT-A-G-GTT-TTAG-T-AG-----------T-TTC---CATG--GT-GG--TATTTCAGAACA----T----CATGATA-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTTAG--TTCTCTA--TGTGCTTCTT--AACTCG--AAGCGCA--GATTTCA-TACA-TTTTT-T---TTTT-GT--ttacgcatctcgaatataggtttcaagtactggtcgattgtgcttctatttattctgaagccaaattgtatatctgttttaaaaaacgttatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|31 ): TTTGTACATGTTCTTTTTTGGGACTGTGATTGCGTACAAAAAGGCGAAGATAACATT
Alignments
lowQualScore : 222222 1111111 1 444444444444444444444444 11111 2222 1111111111111 222222 2 1 1 11111 33333333333333333333 222222222222 111111 1111111 1 11 44444444444444444 11 11111 11 1 11 1111111 111 1 11 11111111111 1 111111111 11 222 111111 22222222222222 111 11111 11 222 1 22222 3333333333333333 1 11111 11111 111 111111 2222 111 3333333333333333 11 22222 2222 1
lowQualScore : 5 777777 66 66 999 55 4444444 4 4 99 0 4 44 2 333333333333333333333333 4 8 4 5 4 4 777 4 99 55 4 55 00000 6666 4 0 5555555555555 2 66 888888 5 2 5 1 99 99 5 77 1 5 777 5 55 99999 5 66 3 88888888888888888888 77 6 66 1 333333333333 5 444444 5 5 66 66 6666666 66 1 999 5 1 44 88 1 5 4 4 00 55555555555555555 5 4 4 00 11111 4 4 11 0 55 0 4 66 2 777 1 66 4 4 0 2222222 4 4 88 555 4 66 4 4 3 4 2 66 4 4 4 0 11 2 99999999999 88 66 5 5 5 6 3 999999999 99 555 666666 6 6 99 6 5 5 66666666666666 1 999 9999 11111 55 4 4 1 66 5 999 5 1 777 1 888888 5 55 0 1 1 5 77 5 00000 8 1111111111111111 9999 6 44 999 1 5 222 5 5 66 1 6 2 0 22 1 6 99 66666 55555 3 22 1 000 3 1 77 3 2 999999 4444 77 000 6 6 1 0 3 1 9999999999999999 11 0 1 0 55555 1111 2 1 0 6 1 0 1 1
lowQualScore : . ...... .. .. ... .. ....... . . .. . . .. . ........................ . . . . . . ... . .. .. . .. ..... .... . . ............. . .. ...... . . . . .. .. . .. . . ... . .. ..... . .. . .................... .. . .. . ............ . ...... . . .. .. ....... .. . ... . . .. .. . . . . .. ................. . . . .. ..... . . .. . .. . . .. . ... . .. . . . ....... . . .. ... . .. . . . . . .. . . . . .. . ........... .. .. . . . . . ......... .. ... ...... . . .. . . . .............. . ... .... ..... .. . . . .. . ... . . ... . ...... . .. . . . . .. . ..... . ................ .... . .. ... . . ... . . .. . . . . .. . . .. ..... ..... . .. . ... . . .. . . ...... .... .. ... . . . . . . ................ .. . . . ..... .... . . . . . . . .
lowQualScore : 0 999999 99 99 111 44 4444444 0 0 77 6 0 77 0 000000000000000000000000 0 0 0 7 0 0 000 0 55 55 0 55 00000 6666 0 7 6666666666666 9 11 444444 0 9 7 4 99 22 7 99 4 7 111 0 11 22222 0 00 2 77777777777777777777 99 6 99 1 222222222222 0 444444 0 0 99 99 2222222 99 4 333 3 7 44 44 0 0 4 4 66 88888888888888888 0 4 4 99 99999 4 4 00 0 99 9 5 11 0 888 1 11 4 4 9 0000000 4 4 33 666 4 11 4 4 3 4 6 11 4 4 4 9 99 2 00000000000 66 99 0 0 7 7 3 333333333 00 777 333333 7 7 22 7 7 0 11111111111111 0 444 4444 11111 00 4 4 1 99 0 111 0 0 444 4 111111 7 99 1 4 0 7 99 7 33333 0 2222222222222222 3333 7 77 333 4 0 444 7 7 11 0 7 5 7 44 7 7 22 77777 88888 2 77 0 222 5 6 99 2 5 222222 0000 99 000 7 4 4 6 8 4 8888888888888888 00 8 0 6 55555 2222 5 0 0 4 4 8 4 4
consensus : CCTTTGC-TTCGCGCT--GTAA--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CTTGCA-GAGAAC-AC-ATCGT------GTGTC-TA-TCTA--C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA-TT-AAATATCAA-TCGTAGAATGT------TT----TGGCCTGTTTT--ATTTCGAAG-A---T-TTTTG-TT-GAAAA-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTT-AGG-GTT-TTAN-TAAA-----------T-TTC---CATG--GCGGG--TATTTCAGAGCA-A-GT----TGTGGTG-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTCAGAATCCCGTA--TGTG-TTTTT--AACTCGTAAACCG-ATTGATTTNA-TACA-TTTCT-TG--TTTT-GT--C-ATA-G-T--ATCTTCAAA-CTGCG-GAT-GGAA-GACGCAGTCAAATGCAGGGTTGTCCGT-GTTA-GC-TTTTAA--TT-AAGTATTATATTGTAAAAGG--AGTTTTATTCTA---CGTAGA--TC-GA-GAGGTGGTTCGTT---T---G-C-CCC-ACATA-CAAA-ACTGTC--TACAGG-AGA-GGTTCG-AAAGCTC-CTGNG--CA-CAGTCG-AAGACCTT-GGTGATGGA--TTGCATCGAGAGCTTT----T--AATATA-TGAT--GTTCT-T-GCCGCT-CCA-TAT-AC------T--ATACAAGCCGTT-AGTCCTA-GTTT-AG-ACC--GGATC-AGAGAGC-GA-TACAG--------------GTGNA-G-AGAG----TATTT-----TT--ATC-TGC-TCCCCATTTTG--TG-TT--CGCT-ACNAC-T-TT-TTAT--TA--T-CA-AAGAGCCTTTGNACATTTCTCTTTG-AGCATTG--C-TATA-AT--GA-GTTATGAACGAAAGG----AAAGTTC--A-T-TATCGAAAATGACACC-T-AAGAACTTAACCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCTAATGNCAATTGC-GGATCATCGTGATGTTTCCGTTTAGAACAGAAATGCACGCACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAAGTCGT------TTTTTA-T-AC--TTTAGCCAGAATG---TTTATTTT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAANGCCCAATTCTTGTTCGAAATTGTCTGAAA--GT--TGATCCTAAGCGTACATTGANATTTCTATTACC----GAAAAAAT----GATGAANT-CTGGTAGATGCCCTTTATGGCCAATATAATAAAGATCTTTTAAGATACCGTATTTC
Reference ( family-223 ) : CCTTTGC-TTCGCGCT--GTAA--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CTTGCA-GAGAAC-AC-ATCGT------GTGTC-TA-TCTA--C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA-TT-AAATATCAA-TCGTAGAATGT------TT----TGGCCTGTTTT--ATTTCGAAG-A---T-TTTTG-TT-GAAAA-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTT-AGG-GTT-TTAN-TAAA-----------T-TTC---CATG--GCGGG--TATTTCAGAGCA-A-GT----TGTGGTG-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTCAGAATCCCGTA--TGTG-TTTTT--AACTCGTAAACCG-ATTGATTTNA-TACA-TTTCT-TG--TTTT-GT--C-ATA-G-T--ATCTTCAAA-CTGCG-GAT-GGAA-GACGCAGTCAAATGCAGGGTTGTCCGT-GTTA-GC-TTTTAA--TT-AAGTATTATATTGTAAAAGG--AGTTTTATTCTA---CGTAGA--TC-GA-GAGGTGGTTCGTT---T---G-C-CCC-ACATA-CAAA-ACTGTC--TACAGG-AGA-GGTTCG-AAAGCTC-CTGNG--CA-CAGTCG-AAGACCTT-GGTGATGGA--TTGCATCGAGAGCTTT----T--AATATA-TGAT--GTTCT-T-GCCGCT-CCA-TAT-AC------T--ATACAAGCCGTT-AGTCCTA-GTTT-AG-ACC--GGATC-AGAGAGC-GA-TACAG--------------GTGNA-G-AGAG----TATTT-----TT--ATC-TGC-TCCCCATTTTG--TG-TT--CGCT-ACNAC-T-TT-TTAT--TA--T-CA-AAGAGCCTTTGNACATTTCTCTTTG-AGCATTG--C-TATA-AT--GA-GTTATGAACGAAAGG----AAAGTTC--A-T-TATCGAAAATGACACC-T-AAGAACTTAACCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCTAATGNCAATTGC-GGATCATCGTGATGTTTCCGTTTAGAACAGAAATGCACGCACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAAGTCGT------TTTTTA-T-AC--TTTAGCCAGAATG---TTTATTTT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAANGCCCAATTCTTGTTCGAAATTGTCTGAAA--GT--TGATCCTAAGCGTACATTGANATTTCTATTACC----GAAAAAAT----GATGAANT-CTGGTAGATGCCCTTTATGGCCAATATAATAAAGATCTTTTAAGATACCGTATTTC
gi|1 : CCTTTGC-TTCGCGCTATGTAA--A--AAGCT-TG-------TTGCTATCGTTTGG-AAA--CTAGCA-GAGAACTACGATCAT------ATGTCGTAGTCTA--C-TAGCAAGCGGCA-GCAGACTTTATT---TTCGGTC--TTTT--GATCC-GT--CT-----GTAATT-AAATATTAA-TGCTAGAATGTA-----TT----TGGCCTGTTAT--TCTTCGAA------T-TTTTG-TT-AAAAC-AGCGG--ATTGATGTT-CAGAATT--TTA--TA-T-CAA-AGA---TGAATGT-T-CTACCTT-AAG-GTTCTTATATAAA-----------T-TTC---CATG--GCAGG--TATT-CAGAGCA-A-GT----TGTGGTG-TTC------TAC-A-A--TA--TTC-------AAAGGCAAGTCAGAATCCTGTA--TGTG-TTTT---AACTCGTAA--CA-ATTGATTTAA-TACACTTTCT-TG--TTTT-GT--C-ATA-GGT--ATCTTCAA--CTGCG--AT-GGAA-GACGCAGTAACA-GCAGGGTTCTGCAT-GTTAAGC-TTTTAA--TT-AAGTATTATATTGCAAAAGG--AGTTTTATTCTA---CGTAGA--TC-AATAAGGTGGTTCGTCGTAT---A-C-CTC-ACATT-CAAA-ACTGTCCATACAGG-AGA-TTTCTG-AAAGCTCACTGAG--CA-CAGTCA-AAGACATT-GGTGATGGAA-TTGCATCGAGAGCTCT----TGTAATGTA-TGAT--GTTCTGT-GCAG-T-CCA-TAT-AC------T--ATACAAGCCGTTTAGTCCTA-GTTT-AG-ACC--TGATCCAAAGAGC-GA-TAC-G--------------GTGGA-G-AGAG----TATTT-----TTT-ATC-TGCATCCCCATTTGGCTTG-TT---GCT-ACCAC-TGTT-TTAT--TC--T-CA-AAGAGC--TTGAACATTTATCTT-G-AGCATGG--CCTATA-AT--GA-GTTATGAACGAAAGATTTAAAAGTTT--A-T-TATCGAAAATGACACC-T-AAAAAATTAATCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCCAAAGTCAATTGT-GGATCATCGTGATGTTTCCGTTTAGAGCAGAAATGCACACACGCAGTTTAAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAGGTCGT------TTTTTA-GAAC--TTCGGCCAGACTG---TTTATTTT-TATACTAAATAATGTGACCGATAAAATACTTCCTTGAGGAACGCCCATTTCTTGTTCGAAATTGTCTGAAAGTGT--TGAACCTAAGCGTACATTGAAATGTCTATTACT----TAGGAAATTCTGAATGAAGT-TTGGCAGATGTCCTTTAAGGCCAATATTGTGAAGATCTTTTAAGATACCGTATTTC
gi|10 : CCTTTGC-TTCG-GCT--GTAA--A--A---T-TG-------TTGCC-GCGTTGAGCAAGT-CT-GCAAGAGAA--AC-AT----------------------------GCA-GCGGCAAGC-GACTTTATTAAATT-GGTC--TTTTTCGATCCCGTACCT-----GTA-TT-AAGT-TCAA-TCGTAGAATGT------TT-----GGTCTGTTTTTTATTTCGAAG-A---T-GTTTGGTT-GAAAA-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TATTTCAGCAAAGGATGA-TGTGT-CTACCTT-A-G-GTT-TTAT-T-AA-----------T-ATC---CATG--GCGGT--TATTTCAGAGCATA-AT----TG-GGTGTTTT------TACAA-A--TA--TTC-------AAA-GTAAGTCAGAAGCCCGTA--TGTc
gi|11 : GGAAGTCGTGTTTTTTTTTTT-T-AC--TTTAGCCAGAATG---TTTATTTG-CATACTAGATAAAGTAATCGATAAAATATTTCCTTGTGGAACGCCCAATTCTTGTTCTAAATTATC---GA--GT--TTATACTAAGCATACATTGAAACTTCTATTACTTTGGGAAAAAAT----GACGAAGTCCTGGTAGATGCCCTTTATAGCCAATACAATAAAGATCTTTT
gi|12 : G----AAAGTTC--A-T-TATCAAAAATGACACC-T-AATATCTTAACTTC-TTTTACTACTTTAATT-GG-AG-CCCCATGTAATGACAGCTGC-AGATCATCGTGATGTTTCCGTTCAGAACAAAAATGCACACATGCAGTTTTAATTCTGGAAA-TGTAAACCCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTTGACATAGCTGTAA-----TTTTTGCTCTGTGGAATTCATA----TTTTGGGATTTATAACAGAGAACAAATTC--ATCAACATAGA--TACTTTCATGGAAGTCttttttttttttcagtgttgcagtgttcgagctagtgagtatggcaaatgctgctggaaacatggctctgttgagtgt
gi|13 : acTA--GACTTTCA-AGAAGTTGT------TTTAT--T-AC--TTTAGCCAGAATG---TTTATTGT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATTCTTGTTC------------AA--GT--TGATCCTAAGCATACATTAACATTTCTATTATC----AAAAAAAT----GATGAACT-CTGATAGATGCCCTTTGTGGCCAATTTAATAAAGATCTTTT
gi|14 : TTTTA-TTAC--TTTAGCCAGAA-G---TTTATTGTATATACTAGAATATGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATCTTTGTTCAGA--------------T--TGATCT--AGCATACATTAACATTTCTATTATC----AAAAAAAT----GAT-AACT-CTGATAGATG-CCTTTGTGGCC-ATTTAATAAAGATCTTTTggtttttttcagtattgcagtgttcgagttcgtgagtatggcaagtgctgctggaaacatggctctgttgagtgta
gi|15 : gTATTATAAAATG--AGTTTTATTCTG---C----A--TT-GA-GAAGTGGTTTGTT---T---G-C-CT----------AA-ACTGTC--TACAGG-AGA-AGTTCA-AAAACTC-CCGTG--CA-CAGTCG-AATACCT----TGATGGA--TTACATTGAGAGCCT------------TA-TGAT--GTTCT-T-GCCGCT-ggtttttttcagtattgcagtgtcgaggttctgtaggtatggcaagtgctgctggaaacatggctctgttgagtgt
gi|15 : gGAGAGC-GA-TGCAG--------------ATGCA-GTAGAG----TATTG-----T---ATC-TGC-TACC-GTTTTG--TG-TT--CGCT-ACAAA-TATTATTA---TA--T-C--AAGATCCTTTGTACATTTCTCTTTG-AGCATTG--C-TATA-gagagcgatgcagatgcagtagagtattgtatctgctaccgttttgtgttcgctacaaatattattatatcaagatcctttgtacatttctctttgagcattgctatata
gi|16 : gtattataaaatgagttttattctgcattgagaagtggtttgtttgcctaaactgtctacaggagaagttcaaaaactcccgtgcacagtcgaataccttgatggattacattgagagccttatgatgttcttgccgctCCTTTGC-TTTG-GCT--GTAT--A--AG--T-AG-------TTGCC-TCGTTTGG-AAGT-CTTGTA-GAGAAT-AC-ATTGT-------TAGC-TA-TTT---C-T-GCA-GCAGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-AT--CT-----GTA--T-AAATATTAA-TCGTAGAATG-------TT----TGGCCTGCTTT--ATTTCGAAT-AT--T-TTTTGTTT-GAAAA-AGTGta
gi|17 : AG--TGA-TGTGTTCTACTTT-AGGAGTT-TTGG-TAGAAGGATGTAGTCTGTTCGGGCATGCGACGGG--TGTTTCAGAATA-ATGTCTAGTGTTGTG-TCT------TA--A-A--GACTTCC-------AAAGGTAAGTTAGACTCCTGTA--TGTG-TTTTTTTAAATTGTAAACCA-ATTGGTTTTA-TACA-TTTCT-TG--TTTT-TTACC-ATA---TAAATCTTCAGA-CTGCG-GAT-GGAA--ACGCAGTCAAATACAGGGTTGTC-------A-GC-TTTTGA--TT-aataacatttgcagttcaaacatccggaggtttgctcatcgcggtgttattaatttgacagtgtagtctttc
gi|18 : atTTAAGTTT-AAGAAC-ATATTATTA--GGCTAATTTAATTCTA--------------AA-GAGGAGGTTCGTT---T---G-CTCCC-ACACA-AAAA-ATTG-C--TGCTGT-GGATGGTTGG-AACGTTC-CAGAG--CT-AAGCCG-TGGACCCT-GATGATGGA--TCGCGTAAAGTGC-TT----T--AAGAAC-TGAC--ATTCT-T-ACt
gi|19 : AAAAAGACGCC-C-AAAAACATAACCTCCTTT-ACGACGTTAATT-GG-AG-CTCCATCTAATGCCAATTGC-GGATCATCGTGATGTTTCCGTTTGGAACAGAAATGCACACACTCGGTTTTAG---TGGAAAATTTAAAACCATTTGCATTAGCCCAG-TTT--TGGATTTCGTTTAGACATaatataaccataatctaaaatgggatcaatgacacataaataatgttaatttcatctctaccattt
gi|2 : TTTGC-TTCGCTC---GTAA--ACGAA--TCTGCGGGGGTCCGCC-TCGTTTGG-AAGTGCTTGTA-GAGAAC-ACAATC--------GTGTC-TA-TTTA--CGT-GCA-GC-GCA-GC-GAC-TTA-T---TT-GGTCGGCCTT--GAATC-GC--CTCGTTAGTA----AAATATCAA-TCGTAGAATGT------GT------GCCTGTTTT--TATTCGAAGAA---TATTTTGTTT-GAAAA-CGCGGGAATT--TGTTTCGAATCTGCTTA--TA--TCAG-AAAG--TGA-TGTG--CTACCTT-A-G-GTG-TTGT-TAAT-----------T-TCC---TAT---GC--G--TATTTCAGAACA-T-GT----TGAG--G-TTT------TAC-ATAACTA--TCC-------AAAGGTCAGTCA-AGTCCCATAATTGTG--TTTT--AA-TCGTAAA-CA-ATTTGTTTAAGTACA-TTTCTCTG--TATT-GT--CAATAGG-T--GTCTTCAAA-CT-CGAGAT-GGAA-GACGCAGTCAAATGCAGGG-TGTCGGTGGTTA-GC--GTTAATTTT-AAGTA-TGTATTGTAAAA-G--AG-TTTATTCTA---CGTAGA--TC-TA-GAGGTGGTTCGTT---T---G-C-TCA-ACATA-C-AA-ACTGTC--TACAGG-AGA-AGTTGA-AAAGCTC-CTGAAGCCACCAGTCGCAAGACCTT-GGTGATGGA--TTGCATCAAG-GCTTTAATAT--AATATG-TGATTGATTC--T-GCCGCTCCCATTATCAC------T--ATACATGCCGTA-AGT-CTACGTTTCAGAACCTAGAATC-AAAGAGCAGA-TACAG--------------GTTGC-G-AGAGTAGATATTC-----TTTAATC-T-C-T-TCCATTTGG--TGTTT--TGCT-ACCAC---TT-TTAT--TATTT-CA-AGAAGCC-TTGAA-ATGTTTCTTTGCAGCATTG--C-TAT--AT--GAGGTTGTGAACG----------AAGTTCTGG-T-TATCGAAAATGACA
gi|20 : TTTGC-TTCG-GCG--GTAT--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CGTGTA-GAGAAT-AC-ATCGT------GTG-A-TA-TC-A--C-T-GCT-GTAGCA-GC-GACTTCATT---TT-GGTC--TTTT--GATCT-AT--CT-----ATA-T---------AA-TTG--------------TT----TGGACTGTTTT--ATTTCGGAG-AG--T-GTTTGCTT-GACAA-
gi|21 : t-------TTACT-TC-TTCGG-AAGT-CGTGTA-GAGAAA-AC-GTTGTTTAATTGTGAC-T--TCTAAAC-T-------------C-GACTTTATT---TT-GGTA--TTTT--GAACC-AT--AT-----GT-------ATACCAA-TTGTACGGTGTACAATATT----TAAACTGTTTT--ATTTTGGAcaa
gi|22 : CTTTGCCTTCGGCCT--GGAA--A--AA--T--G-------TTGCC-TCATTTGG-AAG--CTTACC-GAGAAC-AC-AT---------GT-TC-TA-T-TA--C-TTGCA-GCGGCA-GC-GACTTTATT---TT-GGTCT-TTTT--GATCC-GT--CT-----GTA-TTAAAATATCAATTCGTAGA---T------TT----TA-------TT--ATTTCCTA--A---T-TTTTtaacatatctctcaataacaaac
gi|23 : TAGCTGTAA-----TTTTCTCTCAATAGAGTTTACG----TTTTTGGATTTATAAGATATCAAGAAGTC--ATCGACATAAAGTGAC--GGATCGATGTCCG------CTGTTA-A-ACATTTTA-C---AATGCTATTTATTTT-CAAACTA
gi|24 : cacttttccaatttcttgagggtTTGC-TTGACA----GTAATAG--AA--T-TG-------TTGCC-TCGTTTGT-AAG--CGCGCA-GAGAAC-ACGGTCGT------GTA--------TA--C-T-GCC-GC---------ACTTCAAT---CT--GTC--TTTT--AATCC-AT--CT------TA--T-AAATATCAA-TCGTAGAA--T------TC----TGG
gi|25 : TTA-ATTGTAAGAAT--TTTTTTATTCAA---CCTAAA--TC-GA-GAGGTGATTCGTT---T---GAC-TCA-ACATATC--A-ACTATC--TTCAGA-CGA-GGTTCGAAAAGCTC-CCGTG--CA-CTGTGA-GAGTGCTT-GATGGTacacagcttttgcttgaaaa
gi|26 : gtattaccttGG--TATTTCAGAACA-T-GA----TG-AGTG-TTT------TAC-A-A--TA--TCC-------AAAAGTAAGTCAGAATCCTGTA--TGTGCTTCTT--AATTCGAAAGCCC-ATTGCTTTTA-AACA-TTTCT-TGT-TTTT-GT--C-ATATA-C--ATCTTCA
gi|27 : ACTTAACCTC-TTT------------T-GG-AG-TCCCATCTAATGTCAACTGT-GGATCATCGTGGTGTTTCCGTTTCGAGCAGAAATGCACACACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGC
gi|28 : TTCAGATTT-CTCAAATAGTTCAA-AATA--TAA-------CTACTTTTAG---TT-TTAG-TAA----------------------TG--GTGGGATCATTT----------G------GTGGTA-TTTCCAGTTTAC-A-A--TA--TCC-------AAAGGCAAGTTAGAATCCTGTA--TGTG-
gi|29 : A-TTTCT-TG--TTTT--------------------TCAAA-CTCCA-GAT-GGAA--ACGCTGTCAAATGCAGGGTTATCCAT-ATTA-GC-TTTTAA--TT-
gi|3 : attTTTT--A-TTTGTAGACCG-ATTGATTTTA-TATA-TTTCT-TAACTTTT-G-------A-A----ATCTTCAAA-CTGGG-GATAAAAA-AATACAGTC-AATGCTAGATTGTCAGT-ATTA-GC-TTTCAA--TTGAACTA-TATATTGTAAGGTA--ACTGTGATTCCA---TGTAGG--CC-GA-GAAGTGATT--TT---------C-TCC-ACATA--AAA-ACTACC--TATCAG-AGA-GGTTCGAAAAGCTC-CT------A-CGATAA-AAGACCTT-GATGATGGA--TTACATCAAGAGC-TT----T--AATATA-AGAT--GTTAT-T-GCCGCG-TCA-TAC-CC------T--AAAC-AGCTG-T-AGTTCTC-GATT-AG-ACC--GGATT-AGAAAGC-GA-TACAA--------------ATGTA-GAAGAG----TATTT-----TT--ATC-TGT-TCCCCATTTTG--TG-TTTCCGGT-TTAA----TT-TGATCATA--T-CA-AA-AGCCTTCATACATTTCTCATTA-AGTACTG--C-TATACGTA-GA-ATT--------AAGG----AAAGTTC--ATT-TATCAAAAATTGCAAG-TAAAGAATTTGACCTC-CTT-Att
gi|3 : taa-ACAACTTTACTT-GGGAG-GGACATCTCATTGCAATTGTTGGAT-----------TCCTCTTTA------------ATGTATGCGGTTTTA----TGGAAAACGCAAAATCGTTAACATCATTGCAAGTTTCCTGGATTATGTCTGGACATACATGTAACGTAATTTTCGTTCAATGGAATTCAatttgctgccgtaaaacggctgaaattttgccaacaactttacttgggagggacatctcattgcaattgttggattcctctttaatgtatgcggttttatggaaaacgcaaaatcgttaacatcattgcaagtttcctggattatgtctggacatacatgtaacgtaattttcgttcaatggaattca
gi|30 : taattttatttgtagaccgattgattttatatatttcttaacttttgaaatcttcaaactggggataaaaaaatacagtcaatgctagattgtcagtattagctttcaattgaactatatattgtaaggtaactgtgattccatgtaggccgagaagtgattttctccacataaaaactacctatcagagaggttcgaaaagctcctacgataaaagaccttgatgatggattacatcaagagctttaatataagatgttattgccgcgtcataccctaaacagctgtagttctcgattagaccggattagaaagcgatacaaatgtagaagagtatttttatctgttccccattttgtgtttccggtttaatttgatcatatcaaaagccttcatacatttctcattaagtactgctatacgtagaattaaggaaagttcatttatcaaaaattgcaagtaaagaatttgacctccttaatttgctgccgtaaaacggctgaaattttgccaCAG--------------GTGGA-GGAGAG----TGTTT-----TTT-ATC-TGA-CCCCCATTTTG--TG-TT--CGCT-ACAAC-T-T
gi|32 : -ATA--TGTTTCAGATTT-CTTA--TA-TTC----AAA--TAA-TATGT-CTACTTT--TA-GTT-TTAG-TAAgtatt
gi|33 : AGATGTCCTTTAAGGCCAACATTATGTAGATCTTTTAAGATACCGTATTTCtt
gi|34 : TCAATGGAATTCATA----TTTTTGGATTTATAATAT-GAAT----TTTAATCAATAAATA--GAtat
gi|35 : A-CTGCA-GAT-GGAA-AACGTAGTCAAATGCAGGATTGTCCA----TA-GCATTTTAA--
gi|36 : -TACAG--------------ATGTA-GGAGAG----TATTT-----TT--ATC-TGC-TCCCCATTattt
gi|4 : --AGATTTATTCTAGCTCGTAGA--TC-AA-G--GTA-TTCGTT---T---G-T-CTC-A-ATA-CACATACTTTT--TAAAGG-AGA-GGTTCG-AATGTTC-CTGTA--CA-CAGTCG-AAGAC---------------TTGCATCGAGAGCTTT-------AATGTA--GAT--GTTCT-T-GCCGCT-CCA-TAT-ACATGTACT--ATACA-GCCGT--AGTT-TA-ATTT-AG-ACC--GAATT-TGAGGGC-GA-TACAGAGGTACATGTACATGTATA-T-GGGA----TATTTCTTTTTT--A-C-TGC-TCCCAATTTT---TC-TT--TGCA-ACAACGT-TTATTAT---A--T-CA-T-GAGGTTTTGTACATTTCTCTTTG-AGCATTG--C-TACATGT--AT-ATCAGGAATAAAAAG----AA-GTCT--A-T-AATT-AAAATGACACC-T-AAGAACGTAAC----TCT-A-AACTTTAATT-GG-AG-TACCATCTAACTCCAGTTGC-GAATCAGCATGGTGTTTCCGTTTACAAGAGAGATGAATGCATGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATTGTCTCAA-ATT--TGAACTGTGTTTATACGTAGCTGTAG-----GTTTTGCTCAATGGAATTCATATATTTTTTTAAATTTATATCGTCAAAGAAAAT---ATCAACA----------TCCATGAAAGTCGT------TTTAGA---AT--TTTAGTTAAAGTG---TTTACTT
gi|5 : A-TACA-TTTCT-TG--TTTT--------TG-C-T---TCTTCAAAACTGCG-GAT-GGAATAACGCAGTCAAATGCAGGGTCGTCCGG-GGTA-GA-TTTTAA--TTTAAGTAT-ATAT-GCAAAAGG--AGTTT-ATTCAA---CGTAGAGATCTAA-GAGGTGATTCGTT---TAACG-C-TCA-ACATA-CAAA--CTGTC--TACAGGTAGA-AGTTCG-AAAGCTC-CTGAG--CA-CAGTCG-AAGACCTTGGGGGATGGATTTTGCATCGAGAGCTTT----T---ATATATTGAT--GTTCT-TGGCCGCT-CCA-TATAAC------TAGATAC-AGCCG-T-AGT-CTA--TTT-GA-CCC--TGATC-AAAGAGC-GAGTACAG--------------GTGGAGG-AAAG----TATTT-----TT--ATCATGC-TCCCCA-TTGG--TG-TT--TGCTAACCAC---TT-TTAT--TA--T-CATCAGAGCCTTTGAACAATTTTCTTTG-AGCAATGGCT-TATA-ATGAGA-GTT-----TGAAACG----AAAGTTT--A-TCTAT-GAAAATGATACCAC-AAGAACTTAAACTCTTTT-ACA--CTTAATTGGG-AGTTCCCATCTAAT
gi|6 : a-TCGTTTGG-AAGT-CTTGCA--AGGAC-AG-ATCAT------GT-TC-TA-T-TA--C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA-T--AAATATCAA-TCGTAGAATGT------TT-----GGCCTGTTTT--ATTTCGAAG-AA--T-TTTTG-TTTGAAAACAGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTT-AGG--TT-TTAT-TAA------------T-TTT---CATG--GTGG---TATTTCAGAGCA-A-GT----TG-AGTG-TTT------TAC-A-A--TA--CCCGGTATTCAAAGGCAAGTCAGAATCCCGTA--TGTG-TTTTG--AACTCGTAAACCA-ATTGATTTAA-TATA-TTTCT-TG--TTTTTGT--C-ATA-G-T--ATCTTCAAA-CTGCG-GAT-GGAA-GACGCAGTCAATTGCAGGGTTGTCGGT-GTTA-GC-TTTTAA--
gi|7 : -GAT-GGAA-GACGCAGTCAAATACAGGGTTGTCAGT-ATCA-GC-TTTTGA--TT-TAACAATGTATTGTAGAAGG--AATTTTATTCTT---CGTAAA--TC-GA-GAGGTGGTTCATT---T---G-C-CTCAACATA-C-AG-TCTGTC--TACAGG-AGA-AGTTTGAAAAGTTC-CTGTG--CA-CAGTCG-AAGACCTT-CGTGATGGA--TTGCATCGAGGGC-TT----T--AATATA-AGAT--GTTCT-T-GCCGCC-CCA-TAT-AC------T--ATAC-ATCCA-T-AGTCA-A-GTTT-AG-ACC--GGATT-AGGGAGC-GA-TACAG--------------ATACAGG-AAAT----TATTT-----TT--ATC-TGC-TACCCAATTTG--TG-TT--CGCT-ACCAC---TT-TTAT--TA--TATG-AAGAGCCTTTGTACATTTCTCTTTG-AGCATCG--C-TAT
gi|8 : TTCTGGGAATTTTGAAACCATTTACATCAGTCCAA-TTT--TGGATTTTATTTAGACATAGCTGTAG-----TTTTTGCTCAACGGAATTCAT-----TTTTTTTATTTATAACATAAAACAAAGTC--ATCAACATATA--GACTTCCATGGAAATC-T------TTTTTAGT-AC--TTCAGCCAGACTG---TTTATTTT-TATACCAAATAGTGCAACTGATAAAATAC-----TTT-------CCATTTCTTGTTCGAAATTGTCTGAAA--GTGGTGATCCTAAGCGTACTTTGATATGTCTATTGCgta
gi|9 : TTTAC-TTCG-ACA--GTAA--A--AT--G-TG-------TTGTT-TCGTTTGG-AAGT-CGTATA-GAGAAC-AC-ATCGT------TTG-C-TA-T-TA--C-T-GCA-GCGGCT-GC-AACTTTATT---TT-GGTC--TTTT--GATCC-AT--CT-----GTA-T--AAATATCAA-TTGTAACATGT------TTGGAATAGATTGTTTT--ATTTCGGAG-AATTT-TTTCC-TT-GAAAATAACGAA-ATT--CGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACTTT-A-G-GTT-TTAG-T-AG-----------T-TTC---CATG--GT-GG--TATTTCAGAACA----T----CATGATA-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTTAG--TTCTCTA--TGTGCTTCTT--AACTCG--AAGCGCA--GATTTCA-TACA-TTTTT-T---TTTT-GT--ttacgcatctcgaatataggtttcaagtactggtcgattgtgcttctatttattctgaagccaaattgtatatctgttttaaaaaacgttatt
blockSeqs : C GCCT TA CG G CT CGGGGGT . C TG A T A TGTTTAATTGTGACTTCTAAA G T . G A . AAA . GG TC C AC CGTTA TTA T ACAATATTT T TT GAATT A G T C GA . G AA T C GGA . TT AGGA . T A AAGGATGTAGTCTGTTCGGG CG G AT G ATGTCTAGTGT T CCAGTT A T AC CT GGTATTC AT C TTT A T AC GC T G . C AC TTACCATATAAA A A A TA GGTGG . A GT G TT T CT T GCT G GA T . TAAC A T CA AA T . T T A . T GC C C G TT A TTTAATATA TT TG . G C T C ATGTACT AT TA CTACG C A TA . A G AGGTACATGTACAT C GT TAGA CTTTT TA A . A . T TCC A A TA A TATT A AT T T C GC . CGTA G AGGAATAAAAAG TGG C CA TA C T CTA G G TT A T G AT A G CC CGTAA ATATT A CA T TTA T G GT T G GTTTTT ATT AT CTA A T T C A GAAATTGTCTGAAA GG A TTGGG . G G C C T A A
blockSeqs : . GCT . . A T . . . T . C G TGTTAGCTATTT . . . A . . . . T . . . . TT . TTGGAAT C . TAT . T . T G . . . G . G . T TAG . G A ATATC . G . A TAATTG . . . . . . . . C T T T GC A A . . . T GTCAATAGGTG . . . G CATA . . TT T AT G . A . C . . . T . . C TC . . . . A . A . . . . . T TTTA T . . . . . A TAG A T TCTCG . . . . . . . G GA . . T . . C . . C . C GT A CATA . A T A . . . ATGA . GTGAACG AT . CG AC T . CGA . . C C . G GT A . . . A A AG G C T T . T G . AGT . . . C C A A TAAATTATCGA . C A . G C . C T T A
blockSeqs : . GCT . . A A . . . T . T . CGTGTCTATTTA . . . A . . . . . . . . . T . TTT C . GAA . T . . G . . . . . G . T AGG . T A TTTCC . G . A TGTTGA . . . . . . . . . T T A AC A T . . . . GTCATATACA . . . A AGTA . . . . C A . T . G . . . T . . A CA . . . . A . A . . . . . A TTTA T . . . . . . T A T TTAA . . . . . . . T GG . . . . . C . . T . A T . TA . A T T . . . TGT . TGAAACG A . CA T . . CAA . . C T . G GT A . . . G C GA A C A A . T C . TT . . . C C A A AGA . C A . . C . T T T A
blockSeqs : . CTC . . A T . . . T . A . CGTGTGATATCA . . . G . . . . . . . . . T . TTT A . GAG . C . . A . . . . . A . T AG . G A GTTTC . G . A TGATG . . . . . . . . . T C T AC C T . . . . TGTCATAGTA . . . A CGGG . . . . T T . T . G . . . T . . A CA . . . . . . T . . . . . A TTTA T . . . . . . T A T CAAG . . . . . . . G GG . . . . . C . . C . A . . TA . A T T . . . AT . AAGG A . T C . . AA . . T G . C G A . . . A A CA G C T T . . G . AA . . . . . . T AA . T . A A T
blockSeqs : . GCG . . A T . . . T . C . CATGTTCTATTA . . . G . . . . . . . . . T . TTT A . GAA . . . . . . . . . A . T AG . G A TTTT . . . G AGTTG . . . . . . . . . G C T AG G A . . . . GAAA . . . G GGTG . . . . T G . G . G . . . T . . C C . . . . . . T . . . . . A TTTT A . . . . . . T A T CTA . . . . . . . T GG . . . . . C . . T . A . . TA . G T A . . . A . G T . . CA . . G C . . . T . . . . . T . . . T . . . . T . . .
blockSeqs : . ACA . . T T . . . T . C . CGTTTGCTATTA . . . G . . . . . . . . . T . TCT C . GA . . . . . . . . G . . TA . T . . . . . A TCAT . . . . . . . . . T . . A A C . . . . TGCT . . . G AGTA . . . . T G . T . G . . . T . . C A . . . . . . A . . . . . G TTTA A . . . . . . . T GG . . . . . C . . T . C . . A . . . T . . . . . . . . T . . . A . .
blockSeqs : . CA . . . . . . . T . C . GTTCTATTA . . . . . . . . . . . . . T . TT A . A . G . . AG . G . . . GGT . . . . . . . . . . . . . . . . . CA . . . . . . T . . . . . T . . A C . . . . . . T . . . . . . CT . . . . . . G G . . . . . A . . C . C . .
blockSeqs : . . . . . C . CGTGTATA . . . . . . . . . . . . . . . GT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C T . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . TT .
blockSeqCons : GCN*** A** T* C* CGTGTGCTATTA************ T*** TTT********** GAA*** G* ** G** AG*** G* TGNTG******* T** AC T* T****** ** ** TTTA******* A* T** GG* ** ** C** *** CGT** GTGAAANG******** AT** GAA*************
originalCons : CCTTTGC-TTCGCGCT--GTAA--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CTTGCA-GAGAAC-AC-ATCGT------GTGTC-TA-TCTA--C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA-TT-AAATATCAA-TCGTAGAATGT------TT----TGGCCTGTTTT--ATTTCGAAG-A---T-TTTTG-TT-GAAAA-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTT-AGG-GTT-TTAN-TAAA-----------T-TTC---CATG--GCGGG--TATTTCAGAGCA-A-GT----TGTGGTG-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTCAGAATCCCGTA--TGTG-TTTTT--AACTCGTAAACCG-ATTGATTTNA-TACA-TTTCT-TG--TTTT-GT--C-ATA-G-T--ATCTTCAAA-CTGCG-GAT-GGAA-GACGCAGTCAAATGCAGGGTTGTCCGT-GTTA-GC-TTTTAA--TT-AAGTATTATATTGTAAAAGG--AGTTTTATTCTA---CGTAGA--TC-GA-GAGGTGGTTCGTT---T---G-C-CCC-ACATA-CAAA-ACTGTC--TACAGG-AGA-GGTTCG-AAAGCTC-CTGNG--CA-CAGTCG-AAGACCTT-GGTGATGGA--TTGCATCGAGAGCTTT----T--AATATA-TGAT--GTTCT-T-GCCGCT-CCA-TAT-AC------T--ATACAAGCCGTT-AGTCCTA-GTTT-AG-ACC--GGATC-AGAGAGC-GA-TACAG--------------GTGNA-G-AGAG----TATTT-----TT--ATC-TGC-TCCCCATTTTG--TG-TT--CGCT-ACNAC-T-TT-TTAT--TA--T-CA-AAGAGCCTTTGNACATTTCTCTTTG-AGCATTG--C-TATA-AT--GA-GTTATGAACGAAAGG----AAAGTTC--A-T-TATCGAAAATGACACC-T-AAGAACTTAACCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCTAATGNCAATTGC-GGATCATCGTGATGTTTCCGTTTAGAACAGAAATGCACGCACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAAGTCGT------TTTTTA-T-AC--TTTAGCCAGAATG---TTTATTTT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAANGCCCAATTCTTGTTCGAAATTGTCTGAAA--GT--TGATCCTAAGCGTACATTGANATTTCTATTACC----GAAAAAAT----GATGAANT-CTGGTAGATGCCCTTTATGGCCAATATAATAAAGATCTTTTAAGATACCGTATTTC
finalCons : CCTTTGC-TTCGGCN---GTAA--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CTTGCA-GAGAAC-AC-ATCGTGTGCTATTA------------C-T-GCA-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTAT---AAATATCAA-TCGTAGAATGTTTT----------GGCCTGTTTT--ATTTCGAAGAA---T-TTTTG-TT-GAAAA-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTTAG---GTT-TTAG-TAAA-----------T-TTC---CATG--GCGGG--TATTTCAGAGCATGNTG-------GGTG-TTT------TAC-A-A--TA--TCC-------AAAGGTAAGTCAGAATCCCGTA--TGTG-TTTTT--AACTCGTAAACCG-ATTGATTTNA-TACA-TTTCT-TG--TTTT-GT--C-ATA-G-T--ATCTTCAAA-CTGCG-GAT-GGAA-GACGCAGTCAAATGCAGGGTTGTCCGT-GTTA-GC-TTTTAA--TT-AAGTAT-ATATTGTAAAAGG--AGTTTTATTCTA---CGTAGA--TC-GA-GAGGTGGTTCGTTT------G-C-CCC-ACATA-CAAA-ACTGTC--TACAGG-AGA-GGTTCG-AAAGCTC-CTGNG--CA-CAGTCG-AAGACCTT-GGTGATGGA--TTGCATCGAGAGCTTTA-------ATATA-TGAT--GTTCT-T-GCCGCT-CCA-TAT-AC------T--ATACA-GCCGT--AGTCCTA-GTTT-AG-ACC--GGATC-AGAGAGC-GA-TACAG--------------GTGNAGG-AGAG----TATTT-----TT--ATC-TGC-TCCCCATTTTG--TG-TTC--GCT-ACNAC---TT-TTAT--TA--T-CA-AAGAGCCTTTGNACATTTCTCTTTG-AGCATTG--C-TATACGT--GA-GTTGTGAAANG--------AAAGTTC--A-T-TATCGAAAATGACACC-T-AAGAACTTAACCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCTAATGNCAATTGC-GGATCATCGTGATGTTTCCGTTTAGAACAGAAATGCACGCACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAAGTCGT------TTTTTAT--AC--TTTAGCCAGAATG---TTTATTTT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAANGCCCAATTCTTGTTCGAA-------------GT--TGATCCTAAGCGTACATTGANATTTCTATTACC----GAAAAAAT----GATGAANT-CTGGTAGATGCCCTTTATGGCCAATATAATAAAGATCTTTTAAGATACCGTATTTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|31 ): TTTGTACATGTTCTTTTTTGGGACTGTGATTGCGTACAAAAAGGCGAAGATAACATT
Alignments
lowQualScore : 111 1111111 11111111111 11111 11111 1111111 2222 1 1 3333333333333333 111 1 11111111111111 111111 1111111 1 11 4444444444444444 11 11111 11 11 111 11 222222 1 111111111 1 111111 2222222222222222 11111 11 11 11 3333333333333333333333 11111 1 11111 11111 111 111111 1111 111 99999999999999999999999999999999999999999 22222 2222 1
lowQualScore : 5 5 222 66 66 999 55 4444444 4 4 99 0 4 44 8 4 3 1 77777777777 4 8 55 4 5 4 4 777 4 99 55 4 55 00000 33333 4 0 8888888 99999 2 66 3 1 5 3333 1 99 99 5 77 1 5 777 5 55 5 66 5 5 2222222222222222 000 5 77 3 66 1 22222222222222 5 444444 5 5 66 66 6666666 66 1 999 5 1 44 88 1 5 4 4 55 1111111111111111 5 4 00 4 00000 4 4 00 99 2 88 0 777777 2 777 1 66 4 4 0 777 99999 4 3 4 000 66 66 4 4 4 8 4 2 66 4 4 4 0 11 2 888 111111 66 5 5 5 6 3 999999999 3 99 000000 6 6 99 6 5 5 7777777777777777 1 0 4 4 11111 55 4 4 1 66 5 999 5 1 66 33 77 33 55 0 1 1 5 77 5 5 1111111111111111111111 1 66666 9999 6 44 999 1 5 222 5 5 66 1 6 2 0 22 1 6 99 66666 55555 3 22 1 000 3 1 77 3 2 999999 8888 5 77 000 6 6 1 0 3 1 00000000000000000000000000000000000000000 0 1 0 55555 1111 2 1 0 6 1 0 1 1
lowQualScore : . . ... .. .. ... .. ....... . . .. . . .. . . . . ........... . . .. . . . . ... . .. .. . .. ..... ..... . . ....... ..... . .. . . . .... . .. .. . .. . . ... . .. . .. . . ................ ... . .. . .. . .............. . ...... . . .. .. ....... .. . ... . . .. .. . . . . .. ................ . . .. . ..... . . .. .. . .. . ...... . ... . .. . . . ... ..... . . . ... .. .. . . . . . . .. . . . . .. . ... ...... .. . . . . . ......... . .. ...... . . .. . . . ................ . . . . ..... .. . . . .. . ... . . .. .. .. .. .. . . . . .. . . ...................... . ..... .... . .. ... . . ... . . .. . . . . .. . . .. ..... ..... . .. . ... . . .. . . ...... .... . .. ... . . . . . . ......................................... . . . ..... .... . . . . . . . .
lowQualScore : 0 0 999 99 99 111 44 4444444 0 0 77 6 0 77 0 0 2 6 33333333333 0 0 55 0 7 0 0 000 0 55 55 0 55 00000 33333 0 7 7777777 33333 9 11 9 1 0 3333 4 99 22 7 99 4 7 111 0 11 0 99 0 0 9999999999999999 000 7 99 7 99 1 55555555555555 0 444444 0 0 99 99 2222222 99 4 333 3 7 44 44 0 0 4 4 00 4444444444444444 0 4 99 4 11111 0 0 00 44 1 00 2 777777 0 888 1 11 4 4 9 888 66666 4 9 4 111 33 11 4 4 4 9 4 6 11 4 4 4 9 99 2 888 111111 99 0 0 7 7 3 333333333 3 22 777777 7 7 22 7 7 0 7777777777777777 0 1 4 4 11111 00 4 4 1 99 0 111 0 0 99 88 99 66 99 1 4 0 7 99 7 7 9999999999999999999999 0 77777 3333 7 77 333 4 0 444 7 7 11 0 7 5 7 44 7 7 22 77777 88888 2 77 0 222 5 6 99 2 5 222222 3333 7 99 000 7 4 4 6 8 4 44444444444444444444444444444444444444444 8 0 6 55555 2222 5 0 0 4 4 8 4 4
consensus : CCTTTGC-TTCG-GCN--GTAA--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CTTGCA-GAGAAC-AC-A-TCGTGTG-CTA-T----TAC-T-GC--A-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA--T--AAATATCAA-TCGTAGAATGT------TT----TGGCCTGTTTT--ATTTCGAAGAAT-TTTT--GTTTGAAAA-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTTA-GG--TT-TTA-GTAAA-----------T-TTC---C-ATG--GCGGG--TATTTCAGAGCA-T-GT-TG-G----GTG-TTT------TAC-A-A--TA--TC-------CAAAGGTAAGTCAGAATCCCGTA--TGTG-TTTTT--AACTCGTAAACCG-ATTGATTTNA-TACA-TTTCT-TG--TTTTGT--C-ATA-G-T--ATCTTCAAA-CTGCG-GATGGAA-GA-CGCAGTCAAATGCAGGGTTGTCCGT-GTTA-GC-TTTTAA--TT--AAGNAT-ATATTGTAAAAGG--AGTTTTATTCTA---CGTAGA--TC-GA-GAGGTGGTTCGTT---T---G-C-CCCA-CATA-CAAA-ACTGTC--TACAGG-AGA-GGTTCG-AAA-GCTC-CTGNG--CA-CAGTCG-AAGACCTT-GGTGATGGA--TTGCATCGAGAGCTTT---AATATA-----TGAT--GTTCT-T-GCCGCT-CCA-TAT-AC------T--ATACA-GCCGT--AGTTCTA-GTTT-AG-ACC--GGATC-AGAGAGC-GA-TACAG--------------G-TGNAGGAG-AG-TATTT-----TT--ATC-TGC-TCCCCATTTTG--TG-TT--CGCT-ACCACT--TTTAT--TA--T--CA-AAGAGCCTTTGNACATTTCTCTTTG-AGCATTG--C-TAT-ACGT-G----A-GTTATGAA---ANGA-----AAGTTC--A-T-TATCGAAAATGACACC-T-AAGAACTTAACCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCTAATGNCAATTGC-GGATCATCGTGATGTTTCCGTTTAGAACAGAAATGCACGCACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAAGTCGT------TTTTTA-T-A-C--TTTAGCCAGAATG---TTTATTTT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAANGCCCAATTCTTGTTCGA--------A-------------GTTG-------------ATCCTAAGCGTACATTGANATTTCTATTACC----GAAAAAAT----GATGAANT-CTGGTAGATGCCCTTTATGGCCAATATAATAAAGATCTTTTAAGATACCGTATTTC
Reference ( family-223 ) : CCTTTGC-TTCG-GCN--GTAA--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CTTGCA-GAGAAC-AC-A-TCGTGTG-CTA-T----TAC-T-GC--A-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA--T--AAATATCAA-TCGTAGAATGT------TT----TGGCCTGTTTT--ATTTCGAAGAAT-TTTT--G-TTGAAAA-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTTA-GG--TT-TTA-GTAAA-----------T-TTC---C-ATG--GCGGG--TATTTCAGAGCA-T-GN-TG-G----GTG-TTT------TAC-A-A--TA--TC-------CAAAGGTAAGTCAGAATCCCGTA--TGTG-TTTTT--AACTCGTAAACCG-ATTGATTTNA-TACA-TTTCT-TG--TTTTGT--C-ATA-G-T--ATCTTCAAA-CTGCG-GATGGAA-GA-CGCAGTCAAATGCAGGGTTGTCCGT-GTTA-GC-TTTTAA--TT--AAGTAT-ATATTGTAAAAGG--AGTTTTATTCTA---CGTAGA--TC-GA-GAGGTGGTTCGTT---T---G-C-CCCA-CATA-CAAA-ACTGTC--TACAGG-AGA-GGTTCG-AAA-GCTC-CTGNG--CA-CAGTCG-AAGACCTT-GGTGATGGA--TTGCATCGAGAGCTTT---AATATA-----TGAT--GTTCT-T-GCCGCT-CCA-TAT-AC------T--ATACA-GCCGT--AGTCCTA-GTTT-AG-ACC--GGATC-AGAGAGC-GA-TACAG--------------G-TGNAGGAG-AG-TATTT-----TT--ATC-TGC-TCCCCATTTTG--TG-TT--CGCT-ACNACT--TTTAT--TA--T--CA-AAGAGCCTTTGNACATTTCTCTTTG-AGCATTG--C-TAT-ACGT-G----A-GTTGTGAA---ANGA-----AAGTTC--A-T-TATCGAAAATGACACC-T-AAGAACTTAACCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCTAATGNCAATTGC-GGATCATCGTGATGTTTCCGTTTAGAACAGAAATGCACGCACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAAGTCGT------TTTTTA-T-A-C--TTTAGCCAGAATG---TTTATTTT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAANGCCCAATTCTTGTTCGA--------A-------------GTTG-------------ATCCTAAGCGTACATTGANATTTCTATTACC----GAAAAAAT----GATGAANT-CTGGTAGATGCCCTTTATGGCCAATATAATAAAGATCTTTTAAGATACCGTATTTC
gi|1 : CCTTTGC-TTCGCGCTATGTAA--A--AAGCT-TG-------TTGCTATCGTTTGG-AAA--CTAGCA-GAGAACTACGA-TCATATG-TCG-TAGTCTAC-TAGC--AAGCGGCA-GCAGACTTTATT---TTCGGTC--TTTT--GATCC-GT--CT-----GTAATT--AAATATTAA-TGCTAGAATGTA-----TT----TGGCCTGTTAT--TCTTCGAA---T-TTTT--G-TTAAAAC-AGCGG--ATTGATGTT-CAGAATT--TTA--TA-T-CAA-AGA---TGAATGT-T-CTACCTTAAGG--TTCTTATATAAA-----------T-TTC---C-ATG--GCAGG--TATT-CAGAGCA-A-GT-TGTG----GTG-TTC------TAC-A-A--TA--TT-------CAAAGGCAAGTCAGAATCCTGTA--TGTG-TTTT---AACTCGTAA--CA-ATTGATTTAA-TACACTTTCT-TG--TTTTGT--C-ATA-GGT--ATCTTCAA--CTGCG--ATGGAA-GA-CGCAGTAACA-GCAGGGTTCTGCAT-GTTAAGC-TTTTAA--TT--AAGTATTATATTGCAAAAGG--AGTTTTATTCTA---CGTAGA--TC-AATAAGGTGGTTCGTCGTAT---A-C-CTCA-CATT-CAAA-ACTGTCCATACAGG-AGA-TTTCTG-AAA-GCTCACTGAG--CA-CAGTCA-AAGACATT-GGTGATGGAA-TTGCATCGAGAGCTCTTGTAATGTA-----TGAT--GTTCTGT-GCAG-T-CCA-TAT-AC------T--ATACAAGCCGTTTAGTCCTA-GTTT-AG-ACC--TGATCCAAAGAGC-GA-TAC-G--------------G-TGGAG-AG-AG-TATTT-----TTT-ATC-TGCATCCCCATTTGGCTTG-TT---GCT-ACCACTGTTTTAT--TC--T--CA-AAGAGC--TTGAACATTTATCTT-G-AGCATGG--CCTAT-A-AT-G----A-GTTATGAACGAAAGATTTAAAAGTTT--A-T-TATCGAAAATGACACC-T-AAAAAATTAATCTC-TTT-ACAACTTTAATT-GG-AG-CCCCATCCAAAGTCAATTGT-GGATCATCGTGATGTTTCCGTTTAGAGCAGAAATGCACACACGCAGTTTAAGTTCTGGAAAATTTAAAACCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTAGACATAGCTGTAG-----TTTTCGCTCAATGGAATTCATA----TTTTTGGATTTATAACATAGAACAAAGTC--ATCAACATATA--GACTTCCATGGAGGTCGT------TTTTTA-G-AAC--TTCGGCCAGACTG---TTTATTTT-TATACTAAATAATGTGACCGATAAAATACTTCCTTGAGGAACGCCCATTTCTTGTTCGA--------AATTGTCTGAAAGTGTTG-------------AACCTAAGCGTACATTGAAATGTCTATTACT----TAGGAAATTCTGAATGAAGT-TTGGCAGATGTCCTTTAAGGCCAATATTGTGAAGATCTTTTAAGATACCGTATTTC
gi|10 : CCTTTGC-TTCG-GCT--GTAA--A--A---T-TG-------TTGCC-GCGTTGAGCAAGT-CT-GCAAGAGAA--AC-A-T----------------------GC--A-GCGGCAAGC-GACTTTATTAAATT-GGTC--TTTTTCGATCCCGTACCT-----GTA--TT-AAGT-TCAA-TCGTAGAATGT------TT-----GGTCTGTTTTTTATTTCGAAGATG-TTTG--G-TTGAAAA-AGCGGG-ATT--TGTTTCAGATTT-CTTA--TATTTCAGCAAAGGATGA-TGTGT-CTACCTTA-GG--TT-TTA-TT-AA-----------T-ATC---C-ATG--GCGGT--TATTTCAGAGCA-TAAT-TG-G----GTGTTTT------TACAA-A--TA--TT-------CAAA-GTAAGTCAGAAGCCCGTA--TGTc
gi|11 : GGAAGTCGTGTTTTTTTTTTT-T-A-C--TTTAGCCAGAATG---TTTATTTG-CATACTAGATAAAGTAATCGATAAAATATTTCCTTGTGGAACGCCCAATTCTTGTTCTAAATTATCGA-------------GTTT-------------ATACTAAGCATACATTGAAACTTCTATTACTTTGGGAAAAAAT----GACGAAGTCCTGGTAGATGCCCTTTATAGCCAATACAATAAAGATCTTTT
gi|12 : ---ACGA-----AAGTTC--A-T-TATCAAAAATGACACC-T-AATATCTTAACTTC-TTTTACTACTTTAATT-GG-AG-CCCCATGTAATGACAGCTGC-AGATCATCGTGATGTTTCCGTTCAGAACAAAAATGCACACATGCAGTTTTAATTCTGGAAA-TGTAAACCCATTTACATCAGCCCAA-TTT--TGGATTTTGTTTTGACATAGCTGTAA-----TTTTTGCTCTGTGGAATTCATA----TTTTGGGATTTATAACAGAGAACAAATTC--ATCAACATAGA--TACTTTCATGGAAGTCttttttttttttcagtgttgcagtgttcgagctagtgagtatggcaaatgctgctggaaacatggctctgttgagtgt
gi|13 : TA--GACTTTCA-AGAAGTTGT------TTTAT--T-A-C--TTTAGCCAGAATG---TTTATTGT-TATACTAGATAATGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATTCTTGTTC-A--------A-------------GTTG-------------ATCCTAAGCATACATTAACATTTCTATTATC----AAAAAAAT----GATGAACT-CTGATAGATGCCCTTTGTGGCCAATTTAATAAAGATCTTTT
gi|14 : TTTTA-TTA-C--TTTAGCCAGAA-G---TTTATTGTATATACTAGAATATGTAACCGATAAAATACCTCCCTTTGGAAAGCCCAATCTTTGTTC-A--------G-------------ATTG-------------ATCT--AGCATACATTAACATTTCTATTATC----AAAAAAAT----GAT-AACT-CTGATAGATG-CCTTTGTGGCC-ATTTAATAAAGATCTTTTggtttttttcagtattgcagtgttcgagttcgtgagtatggcaagtgctgctggaaacatggctctgttgagtgta
gi|15 : gTATTATAAAATG--AGTTTTATTCTG---C----A--TT-GA-GAAGTGGTTTGTT---T---G-C-CT----------AA-ACTGTC--TACAGG-AGA-AGTTCA-AAA-ACTC-CCGTG--CA-CAGTCG-AATACCT----TGATGGA--TTACATTGAGAGCCT--------TA-----TGAT--GTTCT-T-GCCGCT-ggtttttttcagtattgcagtgtcgaggttctgtaggtatggcaagtgctgctggaaacatggctctgttgagtgt
gi|15 : gGAGAGC-GA-TGCAG--------------A-TGCAGTAG-AG-TATTG-----T---ATC-TGC-TACC-GTTTTG--TG-TT--CGCT-ACAAAT--ATTATTATA--T--C--AAGATCCTTTGTACATTTCTCTTTG-AGCATTG--C-TAT-Agagagcgatgcagatgcagtagagtattgtatctgctaccgttttgtgttcgctacaaatattattatatcaagatcctttgtacatttctctttgagcattgctatata
gi|16 : gtattataaaatgagttttattctgcattgagaagtggtttgtttgcctaaactgtctacaggagaagttcaaaaactcccgtgcacagtcgaataccttgatggattacattgagagccttatgatgttcttgccgctCCTTTGC-TTTG-GCT--GTAT--A--AG--T-AG-------TTGCC-TCGTTTGG-AAGT-CTTGTA-GAGAAT-AC-A-TTGTTAG-CTA-T----TTC-T-GC--A-GCAGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-AT--CT-----GTA--T--AAATATTAA-TCGTAGAATG-------TT----TGGCCTGCTTT--ATTTCGAATATT-TTTT--GTTTGAAAA-AGTGta
gi|17 : AG--TGA-TGTGTTCTACTTTA-GGAGTT-TTG-GTAGAAGGATGTAGTCTGTTCGGGC-ATGCGACGGG--TGTTTCAGAATAAT-GTCTA-GTGTTGTG-TCT------TA--A-A--GACTTC-------CAAAGGTAAGTTAGACTCCTGTA--TGTG-TTTTTTTAAATTGTAAACCA-ATTGGTTTTA-TACA-TTTCT-TG--TTTTTTACC-ATA---TAAATCTTCAGA-CTGCG-GATGGAA--A-CGCAGTCAAATACAGGGTTGTC-------A-GC-TTTTGA--TT--aataacatttgcagttcaaacatccggaggtttgctcatcgcggtgttattaatttgacagtgtagtctttc
gi|18 : atTTAAGTTT--AAGAAC-ATATTATTA--GGCTAATTTAATTCTA--------------AA-GAGGAGGTTCGTT---T---G-CTCCCA-CACA-AAAA-ATTG-C--TGCTGT-GGATGGTTGG-AAC-GTTC-CAGAG--CT-AAGCCG-TGGACCCT-GATGATGGA--TCGCGTAAAGTGCTTT---AAGAAC-----TGAC--ATTCT-T-ACt
gi|19 : AAAAAGACGCC-C-AAAAACATAACCTCCTTT-ACGACGTTAATT-GG-AG-CTCCATCTAATGCCAATTGC-GGATCATCGTGATGTTTCCGTTTGGAACAGAAATGCACACACTCGGTTTTAG---TGGAAAATTTAAAACCATTTGCATTAGCCCAG-TTT--TGGATTTCGTTTAGACATaatataaccataatctaaaatgggatcaatgacacataaataatgttaatttcatctctaccattt
gi|2 : TTTGC-TTCG-CTC--GTAA--ACGAA--TCTGCGGGGGTCCGCC-TCGTTTGG-AAGTGCTTGTA-GAGAAC-ACAA-TCGTGT--CTATT----TACGT-GC--A-GC-GCA-GC-GAC-TTA-T---TT-GGTCGGCCTT--GAATC-GC--CTCGTTAGTA-----AAATATCAA-TCGTAGAATGT------GT------GCCTGTTTT--TATTCGAAGAATATTTT--GTTTGAAAA-CGCGGGAATT--TGTTTCGAATCTGCTTA--TA--TCAG-AAAG--TGA-TGTG--CTACCTTA-GG--TG-TT--GTTAA-----------T-TTC---CTAT---GC--G--TATTTCAGAACA-T-GT-TG-A----G-G-TTT------TAC-ATAACTA--TC-------CAAAGGTCAGTCA-AGTCCCATAATTGTG--TTTT--AA-TCGTAAA-CA-ATTTGTTTAAGTACA-TTTCTCTG--TATTGT--CAATAGG-T--GTCTTCAAA-CT-CGAGATGGAA-GA-CGCAGTCAAATGCAGGG-TGTCGGTGGTTA-GC--GTTAATTTT--AAGTAT-GTATTGTAAAA-G--AG-TTTATTCTA---CGTAGA--TC-TA-GAGGTGGTTCGTT---T---G-C-TCAA-CATA-C-AA-ACTGTC--TACAGG-AGA-AGTTGA-AAA-GCTC-CTGAAGCCACCAGTCGCAAGACCTT-GGTGATGGA--TTGCATCAAG-GCTTT---AATATAATATGTGATTGATTC--T-GCCGCTCCCATTATCAC------T--ATACATGCCGT--AAGTCTACGTTTCAGAACCTAGAATC-AAAGAGCAGA-TACAG--------------GTTGCGAGAGTAGATATTC-----TTTAATC-T-C-T-TCCATTTGG--TGTTT--TGCT-ACCACT--TTTAT--TATTT--CA-AGAAGCC-TTGAA-ATGTTTCTTTGCAGCATTG--C-TAT-A--T-G----AGGTTGTG-A---ACG------AAGTTCTGG-T-TATCGAAAATGACA
gi|20 : TTTGC-TTCG-GCG--GTAT--A--AA--T-TG-------TTGCC-TCGTTTGG-AAGT-CGTGTA-GAGAAT-AC-A-TCGTGTG-ATA-T----CAC-T-GC--T-GTAGCA-GC-GACTTCATT---TT-GGTC--TTTT--GATCT-AT--CT-----ATA--T---------AA-TTG--------------TT----TGGACTGTTTT--ATTTCGGAGAGT-GTTT--GCTTGACAA-
gi|21 : t-------TTACT-TC-TTCGG-AAGT-CGTGTA-GAGAAA-AC-G-TTGTTTAATTG-T----GAC-T-TCTAA-ACT-----C-GACTTTATT---TT-GGTA--TTTT--GAACC-AT--AT-----GT--------ATACCAA-TTGTACGGTGTACAATATT----TAAACTGTTTT--ATTTTGGATAAcaa
gi|22 : CTTTGCCTTCG-GCCT-GGAA--A--AA--T--G-------TTGCC-TCATTTGG-AAG--CTTACC-GAGAAC-AC-A-T---GTT-CTA-T----TAC-TTGC--A-GCGGCA-GC-GACTTTATT---TT-GGTCT-TTTT--GATCC-GT--CT-----GTA--TTAAAATATCAATTCGTAGA---T------TT----TA-------TT--ATTTC--CTAAT-TTTT--catatctctcaataacaaac
gi|23 : TAGCTGTAA-----TTTTCTCTCAATAGAGTTTACG----TTTTTGGATTTATAAGATATCAAGAAGTC--ATCGACATAAAGTGAC--GGATCGATGTCCG------CTGTTA-A-A-CATTTTA-C---AATGCTATTTATTTT-CAAACTA
gi|24 : cacttttccaatttcttgagggtTTGC-TT-G-ACA--GTAATAG--AA--T-TG-------TTGCC-TCGTTTGT-AAG--CGCGCA-GAGAAC-AC-GGTCGTGTA----------TAC-T-GC--C-GC---------ACTTCAAT---CT-G-TC--TTTT--AATCC-AT--CT------TA--T--AAATATCAA-TCGTAGAA--T------TC----TGG
gi|25 : GT-ATTA-CC-TTTTAA--TTGTAAGAAT----TT------------TTTTATTCAA---CCTAAA--TC-GA-GAGGTGATTCGTT---T---GAC-TCAA-CATATC--A-ACTATC--TTCAGA-CGA-GGTTCGAAAA-GCTC-CCGTG--CA-CTGTGA-GAGTGCTT-GATGGTacacagcttttgcttgaaaa
gi|26 : GG--TATTTCAGAACA-T-GA-TG-A----GTG-TTT------TAC-A-A--TA--TC-------CAAAAGTAAGTCAGAATCCTGTA--TGTGCTTCTT--AATTCGAAAGCCC-ATTGCTTTTA-AACA-TTTCT-TGT-TTTTGT--C-ATATA-C--ATCTTCA
gi|27 : ACTTAACCTC-TTT------------T-GG-AG-TCCCATCTAATGTCAACTGT-GGATCATCGTGGTGTTTCCGTTTCGAGCAGAAATGCACACACGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATCAGC
gi|28 : TTCAGATTT-CTCAAATAGTTCAA-AATA--TAA-------CTACTTTT-AG--TT-TTA-GTAA-----------------------TG--GTGGGATCATTT----------GG-TG-G-----TA-TTTCCAGTTTAC-A-A--TA--TC-------CAAAGGCAAGTTAGAATCCTGTA--TGTG-
gi|29 : A-TTTCT-TG--TTTT-------------------TCAAA-CTCCA-GATGGAA--A-CGCTGTCAAATGCAGGGTTATCCAT-ATTA-GC-TTTTAA--TT--
gi|3 : attTTTT--A-TTTGTAGACCG-ATTGATTTTA-TATA-TTTCT-TAACTTTTG-------A-A----ATCTTCAAA-CTGGG-GATAAAA-AAATACAGTCAA-TGCTAGATTGTCAGT-ATTA-GC-TTTCAA--TTG-AACTAT-ATATTGTAAGGTA--ACTGTGATTCCA---TGTAGG--CC-GA-GAAGTGATT---T---T-----C-TCCA-CATA--AAA-ACTACC--TATCAG-AGA-GGTTCG-AAAAGCTC-CT------A-CGATAA-AAGACCTT-GATGATGGA--TTACATCAAGAGCTTT---AATATA-----AGAT--GTTAT-T-GCCGCG-TCA-TAC-CC------T--AAACA-GCTGT--AGTTCTC-GATT-AG-ACC--GGATT-AGAAAGC-GA-TACAA--------------A-TGTAGAAG-AG-TATTT-----TT--ATC-TGT-TCCCCATTTTG--TG-TTTCCGGT--TTAAT--TTGATCATA--T--CA-AA-AGCCTTCATACATTTCTCATTA-AGTACTG--C-TAT-ACGTAG----A-ATT----A---AGGA-----AAGTTC--ATT-TATCAAAAATTGCAAG-TAAAGAATTTGACCTC-CTT-Att
gi|3 : taa-ACAACTTTACTT-GGGAG-GGACATCTCATTGCAATTGTTGGAT-----------TCCTCTTTA------------ATGTATGCGGTTTTA----TGGAAAACGCAAAATCGTTAACATCATTGCAAGTTTCCTGGATTATGTCTGGACATACATGTAACGTAATTTTCGTTCAATGGAATTCAatttgctgccgtaaaacggctgaaattttgccaacaactttacttgggagggacatctcattgcaattgttggattcctctttaatgtatgcggttttatggaaaacgcaaaatcgttaacatcattgcaagtttcctggattatgtctggacatacatgtaacgtaattttcgttcaatggaattca
gi|30 : taattttatttgtagaccgattgattttatatatttcttaacttttgaaatcttcaaactggggataaaaaaatacagtcaatgctagattgtcagtattagctttcaattgaactatatattgtaaggtaactgtgattccatgtaggccgagaagtgattttctccacataaaaactacctatcagagaggttcgaaaagctcctacgataaaagaccttgatgatggattacatcaagagctttaatataagatgttattgccgcgtcataccctaaacagctgtagttctcgattagaccggattagaaagcgatacaaatgtagaagagtatttttatctgttccccattttgtgtttccggtttaatttgatcatatcaaaagccttcatacatttctcattaagtactgctatacgtagaattaaggaaagttcatttatcaaaaattgcaagtaaagaatttgacctccttaatttgctgccgtaaaacggctgaaattttgccaCAG--------------G-TGGAGGAG-AG-TGTTT-----TTT-ATC-TGA-CCCCCATTTTG--TG-TT--CGCT-ACAACT--TGTAT--T
gi|32 : -ATA--TGTTTCAGATTT-CTTA--TA-TTC----AAA--TAA-TATGT-CTACTTTT-AG--TT-TTA-GTAA
gi|33 : AGATGTCCTTTAAGGCCAACATTATGTAGATCTTTTAAGATACCGTATTTCtt
gi|34 : TCAATGGAATTCATA----TTTTTGGATTTATAATAT-GAAT----TTTAATCAATAAATA--GAtat
gi|35 : A-CTGCA-GATGGAA-AA-CGTAGTCAAATGCAGGATTGTCCA----TA-GCATTTTAA--
gi|36 : -TACAG--------------A-TGTAGGAG-AG-TATTT-----TT--ATC-TGC-TCCCCATTattt
gi|4 : --AGATTTATTCTAGCTCGTAGA--TC-AA-G--GTA-TTCGTT---T---G-T-CTCA--ATA-CACATACTTTT--TAAAGG-AGA-GGTTCG-AAT-GTTC-CTGTA--CA-CAGTCG-AAGAC---------------TTGCATCGAGAGCTTT---AATGTA------GAT--GTTCT-T-GCCGCT-CCA-TAT-ACATGTACT--ATACA-GCCGT--AGTT-TA-ATTT-AG-ACC--GAATT-TGAGGGC-GA-TACAGAGGTACATGTACATG-TATATGGG-A--TATTTCTTTTTT--A-C-TGC-TCCCAATTTT---TC-TT--TGCA-ACAACG--TTTAT--TA--TATCA-T-GAGGTTTTGTACATTTCTCTTTG-AGCATTG--C-TAC-ATGT-ATATCA-GGAATAAA---AAGA-----A-GTCT--A-T-AATT-AAAATGACACC-T-AAGAACGTAAC----TCT-A-AACTTTAATT-GG-AG-TACCATCTAACTCCAGTTGC-GAATCAGCATGGTGTTTCCGTTTACAAGAGAGATGAATGCATGCGGTTTTAGTTCTGGAAAATTTAAAACCATTTACATTGTCTCAA-ATT--TGAACTGTGTTTATACGTAGCTGTAG-----GTTTTGCTCAATGGAATTCATATATTTTTTTAAATTTATATCGTCAAAGAAAAT---ATCAACA----------TCCATGAAAGTCGT------TTTAGA---A-T--TTTAGTTAAAGTG---TTTACTT
gi|5 : A-TACA-TTTCT-TG--TTTT-------TG-C-T---TCTTCAAAACTGCG-GATGGAATAA-CGCAGTCAAATGCAGGGTCGTCCGG-GGTA-GA-TTTTAA--TTT-AAGTAT-ATAT-GCAAAAGG--AGTTT-ATTCAA---CGTAGAGATCTAA-GAGGTGATTCGTT---TAACG-C-TCAA-CATA-CAAA--CTGTC--TACAGGTAGA-AGTTCG-AAA-GCTC-CTGAG--CA-CAGTCG-AAGACCTTGGGGGATGGATTTTGCATCGAGAGCTTT---TATATAT----TGAT--GTTCT-TGGCCGCT-CCA-TATAAC------TAGATACA-GCCGT--AGT-CTA--TTT-GA-CCC--TGATC-AAAGAGC-GAGTACAG--------------G-TGGAGGAA-AG-TATTT-----TT--ATCATGC-TCCCCA-TTGG--TG-TT--TGCTAACCACT--TTTAT--TA--T--CATCAGAGCCTTTGAACAATTTTCTTTG-AGCAATGGCT-TATAATGA-G----A-GTT-TGAA---ACGA-----AAGTTT--A-TCTAT-GAAAATGATACCAC-AAGAACTTAAACTCTTTT-ACA--CTTAATTGGG-AGTTCCCATCTAAT
gi|6 : a-TCGTTTGG-AAGT-CTTGCA--AGGAC-AG-A-TCATGTT-CTA-T----TAC-T-GC--A-GCGGCA-GC-GACTTTATT---TT-GGTC--TTTT--GATCC-GT--CT-----GTA--T--AAATATCAA-TCGTAGAATG-------TT----TGGCCTGTTTT--ATTTCGAAGAAT-TTTT--GTTTGAAAACAGCGGG-ATT--TGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACCTTA-GG--TT-TTA-TT-AA-----------T-TTT---C-ATG--GT-GG--TATTTCAGAGCA-A-GT-TG-A----GTG-TTT------TAC-A-A--TA--CCCGGTATTCAAAGGCAAGTCAGAATCCCGTA--TGTG-TTTTG--AACTCGTAAACCA-ATTGATTTAA-TATA-TTTCT-TGT-TTTTGT--C-ATA-G-T--ATCTTCAAA-CTGCG-GATGGAA-GA-CGCAGTCAATTGCAGGGTTGTCGGT-GTTA-GC-TTTTAA--
gi|7 : -GATGGAA-GA-CGCAGTCAAATACAGGGTTGTCAGT-ATCA-GC-TTTTGA--TTT-AACAAT-GTATTGTAGAAGG--AATTTTATTCTT---CGTAAA--TC-GA-GAGGTGGTTCATT---T---G-C-CTCAACATA-CAGT--CTGTC--TACAGG-AGA-AGTTTG-AAAAGTTC-CTGTG--CA-CAGTCG-AAGACCTT-CGTGATGGA--TTGCATCGAGGGCTTT---AATATA-----AGAT--GTTCT-T-GCCGCC-CCA-TAT-AC------T--ATACA-TCCAT--AGTCA-A-GTTT-AG-ACC--GGATT-AGGGAGC-GA-TACAG--------------A-TACAGGAA-AT-TATTT-----TT--ATC-TGC-TACCCAATTTG--TG-TT--CGCT-ACCACT--TTTAT--TA--TA-TG-AAGAGCCTTTGTACATTTCTCTTTG-AGCATCG--C-TAT-
gi|8 : TTCTGGGAATTTTGAAACCATTTACATCAGTCCAA-TTT--TGGATTTTATTTAGACATAGCTGTAG-----TTTTTGCTCAACGGAATTCAT-----TTTTTTTATTTATAACATAAAACAAAGTC--ATCAACATATA--GACTTCCATGGAAATC-T------TTTTTAGT-A-C--TTCAGCCAGACTG---TTTATTTT-TATACCAAATAGTGCAACTGATAAAATAC-----TTT-------CCATTTCTTGTTCGA--------A-------------ATTGTCTGAAAGTGGTGATCCTAAGCGTACTTTGATATGTCTATTGCgta
gi|9 : TTTAC-TTCG-ACA--GTAA--A--AT--G-TG-------TTGTT-TCGTTTGG-AAGT-CGTATA-GAGAAC-AC-A-TCGTTTG-CTA-T----TAC-T-GC--A-GCGGCT-GC-AACTTTATT---TT-GGTC--TTTT--GATCC-AT--CT-----GTA--T--AAATATCAA-TTGTAACATGT------TTGGAATAGATTGTTTT--ATTTCGGAGAAT-TTTTTCC-TTGAAAATAACGAA-ATT--CGTTTCAGATTT-CTTA--TA-TTCAG-AAAG--TGA-TGTGT-CTACTTTA-GG--TT-TTA-GT-AG-----------T-TTC---C-ATG--GT-GG--TATTTCAGAACA-T-CA-T--G----ATA-TTT------TAC-A-A--TA--TC-------CAAAGGTAAGTTAG--TTCTCTA--TGTGCTTCTT--AACTCG--AAGCGCA--GATTTCA-TACA-TTTTT-T---TTTTGT--ttacgcatctcgaatataggtttcaagtactggtcgattgtgcttctatttattctgaagccaaattgtatatctgttttaaaaaacgttatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|31 ): TTTGTACATGTTCTTTTTTGGGACTGTGATTGCGTACAAAAAGGCGAAGATAACATT