lowQualScore : 1111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 55555 2 999999999999999999999999 1 1 555555555 1 7777777777777777777777777 1 11111 66666666666666666666666666666 1 111111 33333333333333333 1111 11 777777777777777777777 1 1 1 11111 11 55555555 1 2 1 111 666666666666666 2222222222222222222222222222 2 2 1 333333333333333 2 6666666 333 2 33 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 555555555 111 1 1 111 1 2 2222222222 22 1 1111111 1 111111 111111 666666666666666666666666 11 1 1 111 1 111 1 11111 11111 11 1111 444444444444444 111 1 1111 1111111 1111111 22 111 33333 1111111 222222222222 1111111 1 111111
lowQualScore : 6 111 00000 0 999999999999999999999999 2 3 7 555555555 3 6666666666666666666666666 99 6 99 66666 77777777777777777777777777777 3 999999 6 6 6 6 77777777777777777 6 4444 3 99 99 999999999999999999999 6 3 3 7 6 6 11 11111 11 8 88888888 5 7 0 777 333333333333333 9999999999999999999999999999 7 5 0 0 6 666666666666666 8 4 8 3333333 111 6 44 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 3 0 3 0 000000000 88 1 777 0 6 4 1 5 777 11 6 0 2 7 0 8888888888 3 6 3 55 3 8888888 1 5 777777 5 111111 2 555555555555555555555555 66 0 4 88 7 5 1 5 7 5 777 0 77 0 5 6 77 1 77 5 5 5 2 88 1 55 444 5 66 00000 22222 55 55 0 0000 3 777777777777777 0 66 333 5 0 5 6666 3333333 55 55 6666666 4 555 666 99 6666 555 000 00000 2 22 9999999 3 3 000000000000 66 55 0000000 2 2 0 3 5 2 777777 1 000000 2 2 5 2 444 1 6666 44 44 6 44 2 77 3 44 8888 3 3
lowQualScore : . ... ..... . ........................ . . . ......... . ......................... .. . .. ..... ............................. . ...... . . . . ................. . .... . .. .. ..................... . . . . . . .. ..... .. . ........ . . . ... ............... ............................ . . . . . ............... . . . ....... ... . .. ..................................................................................... . . . . . ......... .. . ... . . . . . ... .. . . . . . .......... . . . .. . ....... . . ...... . ...... . ........................ .. . . .. . . . . . . ... . .. . . . .. . .. . . . . .. . .. ... . .. ..... ..... .. .. . .... . ............... . .. ... . . . .... ....... .. .. ....... . ... ... .. .... ... ... ..... . .. ....... . . ............ .. .. ....... . . . . . . ...... . ...... . . . . ... . .... .. .. . .. . .. . .. .... . .
lowQualScore : 0 000 00000 0 000000000000000000000000 3 3 3 333333333 3 4444444444444444444444444 44 0 22 77777 55555555555555555555555555555 3 222222 7 7 8 7 22222222222222222 7 2222 7 22 00 222222222222222222222 7 3 3 3 7 0 44 44444 00 0 00000000 5 8 0 555 888888888888888 5555555555555555555555555555 0 2 0 0 0 222222222222222 0 0 0 3333333 000 7 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 4 2 1 222222222 22 4 555 0 1 4 4 7 444 66 0 2 8 3 3 5555555555 7 7 0 00 3 1111111 4 7 333333 7 666666 2 888888888888888888888888 00 6 9 66 1 7 4 7 1 7 222 1 99 6 7 0 33 7 99 0 0 0 5 55 9 11 999 0 99 22222 55555 00 11 4 6666 1 555555555555555 1 99 888 0 0 0 4444 0000000 55 55 5555555 0 888 444 11 2222 444 333 00000 9 99 8888888 1 3 444444444444 22 88 6666666 7 7 0 2 0 5 222222 4 777777 4 4 0 7 777 0 5555 22 22 2 22 4 66 1 22 7777 1 1
consensus : TATTCGACATGCATGTACATGTGCAGTATATACAGTGCATTGGCGAATTCCGAGAGAGGGNNNNGGGGAAGGGGGGGGGGTG-TCCAGGGGTTGGATCCCC--------TTT-CTCTGGGACACCTA---TGTAGTTTTT-TTAAAAACATGTTCAAAAGGTC--TTTGC-----TAT---T--N------------AAA---A---TTAAC-TA------GCACTGAATG-GTG-ATGGGTTTT-CTTTC--------TGTA-C--NAAACTT-TTACG----CATTGC--ATGTACAAT--TTTACCTGAA------CT-TT--TT-AC--AAGACTTACGAGTACATA-TA-TATTTCAAAAATAAAAATGAATAATCAGTATCTTTTCATTAAAT--TC-ATATTCATAAACGAGCCAAGATATTGT-CATATTT-GCATC---AATGGCNA-TTA-----GATTAAGAAAGTTATAAAGCAACC--------------CCGCCCCCAAATACAACCTGCTTCGAAAGTGTGGCCCGCC-AAG-CC-GAGGAAAGGA-AAGTTTTTTTT-C-------GGGGGGGGGGGTCCCGTCTT-ATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTTATAACTT-TTACAG-TTCCGC-TAAT-ATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAAT-A--------ACTAAA-AGTTGTAAANGCGTTTT-AG-ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-------------------T----CANGCGAAAACT-ATATATT-GC-T-TCCAT-TAAAAAAG-GTCATGAAA--TAATG-TCACGTT-CTTTGTAAGC--GG-GGA-AAGCACGCACGAGGTCCGTTTA-ATGTTGCCTTTTGTGTTTAGA-C--C-G-C-CCAC-----TTTG-TT-ATTATTATT----CATGAAAGAGC-A-C--CCTGGCG-AAAAC--TGCTTGATAA---AG-GG-TT-AA--G-AT-------TCAG--CAA--ATT--G----TTC-GGCATT---TCTTG---AGAT-GAAAAAC---AA---AGG-AGACTAA-T-AAAACTAA-TCT-GAAA-----C-C-ATTGTCT-G------------TGGTGTCT-AA-GTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
Reference ( gi|1 ) : TATTCGATATGCATGGAAATGTA-----TATATA-TGCATTGGCGAAT---------GAAATAAAAAAAAAGGGGGGAGGTG-TCCAGGGGTTGGATCCCA--------TTT-CTCTGGGACACCTAGTATGTAGTTTTTTTTAAAAAGATGTTCAAATAGTC--TTTGC-----TAT---T--C------------AAA---A---TTAAC-TA------GCACTGAATG-GTG-ATGGATTTT-CTTTC--------TGTA-T--AAAACTT-TTACG----CATTGC--ATGTACAAT--TTTACCTGA-------CT-TT--TT-AC--AAGACTTACGAGTACATA-TA-TATTTCAAAAATAAAAATCAATAATCAATAT-TTTTCATTAAAT--TC-ATAT--------GAGCCAAGATATTGTTCATATTT-GCATC---AA-GGCAAATTA-----GATTAAGAAA-TTA--------CC--------------CCACCCCCCAATA-AACCTGCT-CGAA-GTGTG--CC--C-AAG--C-GAGGAAAGGA-AAG-TTTTTTT-CGGGGGGGGGGGGGGGGGGTCCCGTC-T-ATTGTTATTTA-GTACATT-TAAGTAT-------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGGTTTGAACG-AAACGTATATTGATGGTTATAACTTTTTACAG-TTCCGCATAAT-ATATTTTCCATATTTA-GT-G-CTACGT-ATAGATCTATAAACCGAATGTGCTTTTAAT-A--------ACTAAA-AGTTGTAAAAGCGTTT--AG-ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-------------------T----CAGGTGAAAACT-ATATATT-GC-T-TC-AT-TAAAAA-G-GTCATGAAA--TAATG-TCACATT-CTTTGTAAGC--GG-G-A-AAGCACGCACGAGGTCAGTTTA-ATGTTGCCTTTTGTGTTTAGA-C--C-G-C-CCAC-----TTTA-TT-ATTATTATT----CATGAAAGAGC-A-C--CCTGGC--AAAAC--TGCTTGATAA---AG-GG-TT-AA--G-AT-------TCAG--CAA--ATT--G----TTC-GGCATT---TCTTG---AGATTGAAAAAC---AA---AGG-AGACTAAAT-AAAACTAA-TCT-GAAA-----A-C-ATTGTCT-G------------TGGTGTCT-AA-GTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTAG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
gi|3 : TATTCGACATGCATGTACATGTACAGTATATATA-TGCATTGGCGAATTCCGAGAGAGAGAGAGAGAGAAGGGGGGGGGGTG-TCCAGGGGTTGGATCCCC--------TTTTCCCTGGGTCACCTA---TGTAGTTTTT---AACAACATTTTCAAAAGGTC--TTTGC-----TAT---A--A------------AAG---A---TTAAC-TA------GCACTGAATG-GTACCCGGGTATT-CTTTT--------TGTACT----AACTT-TTACA----CATAAC--ATGAACAATTATTTACTTGA-------TT-T-------C--AAAACTTACGAGTACATA-TAGTAT
gi|16 : ggctatgtgccgcggcccgtagtatattttttcccgtttcatgctagaatttacatggttcaattcatcatttgtacttttatgatttcaatgctacatggtgcattcattcactacagtctgagtttcagcttggggtttcctcattaactgaaattctcataggcatttggccccgtccacactatcatattatattcgagagaaggtacggttaaataatccaggctgtgtttgtatattattgaaaacttttaaattttgcacagcaatagccgtacgttacagtgtacatcgctgatattttacaatataaatcggaaagaatttcactagaacctctccattattgaactccataacctacctgaaataaaaggttaaatcacgtgatcctattgcattgtccgctgtttttgtaacataaactcgacttcaccatcatgaattttaattaagagtcATGTG-----TATACAGTGTAT------AT---------GGATTCTGAGAAAAGGAAGG--GTT-TCTAGGGGTTGG-CCCCACCCCCCTCTTT-CTCTGGGACATTTA---TGTAGTTTTT------AACATGCTCAAAAGGTC--TTTGT-----TATAAAT--CTTTAATGATTAAAAG---A---TTAAC-TA------GCACTCAATG-GTG-AT-GATCTGAGTTTC--------TCTACT--AGAA-TT-TTAAA----CATTGC--ATGTGCAacatgtacatgcattttcgctgcattgcacatgctttttcaaaaataaaaatgaataatcagtatcttttcattcatat
gi|27 : acGAGGTGGTTCAGGGGTTGGATCCCC--------TTT-CTTTGGAACAC--------------TTTTTAAA---ATG-------AG-C--TTTGC-----TAT---T--A------------AAAAG-A---GTAACTTA------GCACTGAATG-GTG-ATGt
gi|18 : tcatggattttcaggtaaaggtattcgaaaatttcTCTGGGACACCTAGTATGTA--------TATA--GATGT-CAAA-AGTCGTTTTGTGGGCATATG--TAAC------------GAA---AGATTTAAC-TACATGTAGCACTGGATGTGTG-ATGG--TTT-CTTTCATCTCTCCTGTA-CTAAAAACTTATTATGAGATCA--GCTTATGTACAAT--TCTACCTGAAAAATACCT-TTCATTGACTTCAGACTTAC--GTACAAACTA-TAat
gi|40 : tTTTTGTTAAAAATATGTTCAAATGATC--TTTGC-----TAT---T--A------------AAAAATA---TTAACTTA------GCACTG
gi|2 : gAGTC--TTTGC-----TTA---G--C------------AAA---A---TTAAC-TA------GCACTGAATG-GTG-ATGGATTTT-CTTTC--------TGAA-A--TAAACTT-TTACG----CATTGC--ATGTACAGGA-TTTACCTGAA------CTATT--TT-AC--AAGACTTACGAGTACATA-TA-TATTTCAAAAATAAAAATCAATAATCAATAT-TT--CATTA--T--TCTATAT--------GAGCCAAGATATTGT-CATATTTTGCATC---AA-GACAA--TA-----GATTAAGAAA-TTAAC------CC--------------CCCCCCCCCAATA-AACCTGCT-CGAA-GTGTG--CC--CCAAG--CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGAGGGTCCCGTC-TTATTATTATTTA-GTACATT--ATGTATGN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGAGTTTGAACG-AAACGTATATTAATGGT-ATAACTTATTACAG-TTC-GCATA-T-ATATTTTCCATATTTGTGT-GGCTACGT-ATAGATCTATAA-CCGAGTGTGCTTTTATT-A--------A-TAAATAGTTGTAAAAGCGTTTT-AG-ATATT------TGC-AATG-TCACTACG---AATAAAT--AA-CATGTATATT--------------T----CAGTTGAAAACT-ATATATT-GC-TCTT-AT-T-AAAA-G-GTCATG-AA--TAATGTTCACGTT-CTTTGTAATC--GG-G-AGAAGCA-GCACGAGGTCAGTTTA-ATGTTGCCTTTTGTG---ATA-C--C-G-C-CCAC-----TTTA-TT--TTATT-TT----CATG-AAGAGCAA-C--CCTGGCG-AAAAC--TGCTTGATAA---AG-GG-TT-AAAGA-AT-------TCAG--CAA--ATT--G----TTC-GGCATT---TCTTG---AGAT--GAAAAC---AA---AGA-GAACTAAAT-AAAACTAA-TCT-GAAA-----C-C-ATTGTCT-G------------TGGTGTCT-AA-GT--------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGCTTTTT---ATTAG----CAACGG--G--AAAAG-GGGCTAA--CCACAATGTG-TTGTT--T----AA-CT-CAT
gi|15 : CTGAATG-GTG-TTGTGTTTT-CTTTC--------TGAA-C--CATACTT-TTATT----CATTAT--ATGCATATT--TTT
gi|4 : -CTTTC--------TGTA-C--TAAACTT-TTACG----CATACC--ACGTAC-AT--TCTACCTGA-------A--AT--TT-AT--AAGCCTggttcattatttttcctgcaatttaattaacgtaaaataaaagacatatgcgtatagagtacacgtattttacagcattgcatgtgcgttttcaaagctaaaaatgaattaataataagtgtttcttcataaataattataccagcccaaaa
gi|3 : TTTCAAAAATAAAAATGAATAATCAGTATCTTTTC-----AT--TC-ATAT--------aaaagatttcaagacttggcaatacatagatgcacatgtacatgtattttcactgcatcgcaagtgcttttttcaaaaataaaatgaataatcgatgtcttttcgtacatgattatacaagcccagatttttgtcatattttgattacgaaaataatttaaaaatgatttaaaaactgtctannnnnnnnnnnnnnnnnnnnnnnnnaacctgtctaaaatgtggccccgagcccgaaaaaatgaacgattttttttatttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataatcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|4 : ggctatgtgccgcggcccgtagtatattttttcccgtttcatgctagaatttacatggttcaattcatcatttgtacttttatgatttcaatgctacatggtgcattcattcactacagtctgagtttcagcttggggtttcctcattaactgaaattctcataggcatttggccccgtccacactatcatattatattcgagagaaggtacggttaaataatccaggctgtgtttgtatattattgaaaacttttaaattttgcacagcaatagccgtacgttacagtgtacatcgctgatattttacaatataaatcggaaagaatttcactagaacctctccattattgaactccataacctacctgaaataaaaggttaaatcacgtgatcctattgcattgtccgctgtttttgtaacataaactcgacttcaccatcatgaattttaattaagagtctattcgacatgcatgtacatgtacagtatatatatgcattggcgaattccgagagagagagagagagaaggggggggggtgtccaggggttggatccccttttccctgggtcacctatgtagtttttaacaacattttcaaaaggtctttgctataaaagattaactagcactgaatggtacccgggtattctttttgtactaacttttacacataacatgaacaattatttacttgatttcaaaacttacgagtacatatagtatacatgtacatgcattttcgctgcattgcacatgcttTTTCAAAAATAAAA-TGAATAATCGATGTCTTTTCG-TACATGATT-ATAC--------AAGCCCAGATTTTTGTCATATTT-TGATTACGAA-AATAATTTAAAAATGATTTAAAAA-CTG--------TCTANNNNNNNNNNNNNNNNNNNNNNNNN-AACCTGTC-TAAA-ATGTGGCCC--C-GAGCCC-GAAAAAATGA-ACGATTTTTTT-
gi|6 : ctttctgtactaaacttttacgcataccacgtacattctacctgaaatttataagcctaaaagatttcaagacttggcaatacatagatgcacatgtacatgtattttcactgcatcgcaagtgctttAATCAGTAT-TGTTCATTAAAT--TC-ATATTCATAAACGAGCCA-GATATTGT-CATATTT-GCATC---AATGGCTA-TT------GATTAAGAAAGTTATAAAGCAACC--------------CCGCCCCCAAATACAACCTGCTTCGAAAGTGTG--CCGCC-AGC--C-GAGGAAAGGA-AAGTTTTTTTT-C-------GGGGGGGGGGGTCCCGTCTT-ATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACG--TATTGATGGTTATAACTTATTACAG--TCCGCATAATAATA-TTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAATAA--------ACTAAA-AGTTGTAAAAGCGTTTTAAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT-------------------TA---CACTCGTACACTAATA-ATT-GCTT-TT-AT-TAtatttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataatcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|5 : AATCAGTAT-TGTTCATTAAAT--TC-ATATTCATAAACGAGCCA-GATATTGT-CATATTT-GCATC---AATGGCTA-TT------GATTAAGAAAGTTATAAAGCAACC--------------CCGCCCCCAAATACAACCTGCTTCGAAAGTGTG--CCGCC-AGC--C-GAGGAAAGGA-AAGTTTTTTTT-C-------GGGGGGGGGGGTCCCGTCTT-ATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACG--TATTGATGGTTATAACTTATTACAG--TCCGCATAATAATA-TTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAATAA--------ACTAAA-AGTTGTAAAAGCGTTTTAAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT-------------------TA---CACTCGTACACTAATA-ATT-GCTT-TT-AT-TA
gi|35 : A-GTGCGGCCC--C-AAGGCT-GAGAAAAGGACAGG-TTTTTTT-
gi|7 : TCAGGGTTTGAACG-AAACGTATGC--AAAGTTA---------ACAG-TTCCGC---AT-ATAATTTCCGTATTTA-GT-ttattttgtgagcataatccaattgtgacatatatat
gi|4 : TCAGGGTTTGAACG-AAACGTATGC--AAAGTTA---------ACAG-TTCCGC---AT-ATAATTTCCGTATTTA-GT-tgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtccgaatgtgcttttgataattaaaagctgtatacgtgtttaaatattaaattaacagtatatgcaacatatttattcatgtggaaatcatgcattgcttccattaaaaaaagtcatggaataatgtcccgtactttgtaactgggaaagctcgcaagaggtccattgaatgctgtcctttggtttagacccgccccaatttgtttattattattcatgcaaaaactgcttgataaagggttcaatattcaattaatttttcggcctttctcgagaagaaaaacagaggactatgaaaactcttcagaaaccattgcctgtggtgactaagtata
gi|22 : ctttctgtactaaacttttacgcataccacgtacattctacctgaaatttataagcctaaaagatttcaagacttggcaatacatagatgcacatgtacatgtattttcactgcatcgcaagtgcttttttcaaaaataaaatgaataatcgatgtcttttcgtacatgattatacaagcccagatttttgtcatattttgattacgaaaataatttaaaaatgatttaaaaactgtctannnnnnnnnnnnnnnnnnnnnnnnnaacctgtctaaaatgtggccccgagcccgaaaaaatgaacgattttttttatttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataaTCAGTGTTTGAACG-AAACATATGTTGATGATTAtgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|29 : tgtgacctatattgtatattatatattatacTTAGGGTTTGAACA-AAACATATGCTGATGATTA---------ATAG-TTCTACTTAAT-GTacggatttctgtatttatttgagaaaacccccacaaacctattagattaagaaataaaatttgtaccgatttctggtttttttggggtttttttccagtagt
gi|28 : tatgctgggcacttgtgacatatattttgtacataataatataaTTAGGATTTCAACG-AAACGTATGCTGACGG---TAA------AGGA-TTCAGC---AT-ATATTATCCGT-CTAA-GT-G-C-ATGT-Attgaagtactatt
gi|17 : ataaTTTGTACAGATTTC---TGAT-ATAATTTCT---TTCA-GC-GTCT--GT-ATAAAT------ACCGAACTTGCTTTTTAT-A--------ATT-AA-AGTTTTAAACGTGTTA--AG-GTATTTAATAATGC-ATTA-TCACGACG---A--ATTT--AA-ctaagtattcaaatagcagtaagctttatactgatttctaatttcattttt
gi|30 : aagaATCTATAA-CCGATTGTGCTTTTGAT-ACACATGTAACTAAA-A-TTGTAAACGTGTTC--AG-GTGCT------AGC-AGTG-TCGCTACGA--A-TTTAT--AA-CATGT-------------------attagcattaaaaaaacccgatcacatacattatatgtattcagtgaaaaccatgcatactagtttccatttgataaaaaa
gi|7 : tCCGAATGTGCTTTTGAT-A--------ATTAAA-AGCTGTATACGTGTTT--AA-ATATT----------AA-A-TTA--ACA---G-TATATGCAA-CATAT-------------------TTATTCATGTGGAAATC-ATGCATT-GC-T-TCCAT-TAAAAA-AAGTCATGGAA--TAATG-TCCCGTA-CTTTGTAACT--GG-G-A-AAGCTCGCAAGAGGTCCATTGA-ATGCTGTCCTTTG-GTTTAGACC--C-GCC-CCAA-----TTTGTTT-ATTATTATT----CAT------GC-A------------AAAAC--TGCTTGATAA---AG-GG-TTCAA--T-AT-------TCAA--TTA--ATT--T----TTC-GGCCTT---TCTCG---AGA-AGAAAAAC---AG---AG---GACT--ATGAAAACTCT-TCA-GAAA-----C-C-ATTGCCT-G------------TGGTGACT-AA-GTA-------TAa
gi|9 : tcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtATT------TGC-AATGGTCACTACGGACA-TAAAT--AAGCATGTGTATATGCAGCAAATATTAT----CAGGTTAA--CT-ATGTATTTGT-T-CC-ATATAAGAA-G-GTCATGAAAAATAAAG-TCACGTTTCTTTGTAAGCCGGG-G-A-AAGCACGCACGAGGT-------------G---TTTGTGTTTAGA-CGCC-G-C-CCACAGTTGTTTA-TT-AAAATATTT----CATGAAAGAAC-A-GAGCCTGGCGAAAAACCTTGCTTGATAAT--AG-GGCTT-AA--G-AT-------TCAGAACAAGAATT--------TCAGGCATT---TCTTG---AGAACGAAAAA----AA---AGG-AGACCTACTGAAAATTAATTCT-GAAATCCGCA-C-TCTGTCT-GTATGTCCGCTTCTGATGT-T-AA--TC-------TAT-ACTATATA-ACTTTCGATAGC------ACT----A-TAGA-T-AGC--TTT---ATTGGATAATAGCGA--GATAAAAG-GGGCCAG--CTACTATA-GTTTGTTGATCCATAA-CTACATC
gi|11 : --AG-CATAT-------------------T----TCAGTGAAAAC----ATATT-GC-T-TCCAT-TAAAAAAG-GTCATGAAA--ATATG-TCAAGTT-CTTTGTAAGC--GG-GGA-AAGCACGCACGAGGTCAGTTTA-ATGTTGC-TTTTGTGTTTAGA-C--C-C-CGCCAC-----TTAT-TT-ATTATTATT----CATGAAAGAGC-AAC--CCTGGCG-AAAAC--TGCTTGATAA---AG-GG-TT-AAA-G-AT-------TCAG--CAA--ATT--G----TTC-GGCATT---TCTTG---AGAT-GAAAAAC---AA---AGG--GACTAA-T-AAAACTAA-TCT-GAAC-------C-ATT---------------------TGTCT-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CAc
gi|10 : --AG-CATAT-------------------T----TCAGTGAAAAC----ATATT-GC-T-TCCAT-TAAAAAAG-GTCATGAAA--ATATG-TCAAGTT-CTTTGTAAGC--GG-GGA-AAGCACGCACGAGGTCAGTTTA-ATGTTGC-TTTTGTGTTTAGA-C--C-C-CGCCAC-----TTAT-TT-ATTATTATT----CATGAAAGAGC-AAC--CCTGGCG-AAAAC--TGCTTGATAA---AG-GG-TT-AAA-G-AT-------TCAG--CAA--ATT--G----TTC-GGCATT---TCTTG---AGAT-GAAAAAC---AA---AGG--GACTAA-T-AAAACTAA-TCT-GAAC-------C-ATT---------------------TGTCT-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CAct
gi|14 : TCATGAAA--TAATG-TCATGTG-CTGTATAAAC--GG-GGA-AAGCACGAAAGAGGTCCATTGA-AGGTTGTCTTCTGTGTTTAGATC--C-G-T-CCAC-----TTTGTTT-ATTATTATTCATGCATGAAATAAT-A-C--CATAGCG-AAAAC--TGCTTGATAA---AATGG-TT-AA--ATAC-------CCAG--TTA--ATT--T----TTC-GGCATT---TCct
gi|13 : tccaaaaataatCATTAAT--TGATG-TCACGTG-CTTTATAAAC--AGAG-A-AAGTA-G---GATATCTCTTCATATGTTGTCCTTTGTTTCTAGA-C--CTG-T-CCAT-----ATTG-TTTACCATTATT----CATGAAGGAA--------TTGG---A------TGC----TAA---AG-AATTT-AA--A-AA-------TCAG--CCT--ACT--T----TTC-GGCATTCCATCTTG-------------AC---AA---AG---AACT--ATCAAAACTAT-TCA-TAAA-----A-C-ATacgttacgaaataaaaagatgattatagacagttttcag
gi|25 : gaaaataaaatatatgtaatgattctaacgcaatttagaatttccG-G-A-AATCACGCACGAGGTCCATTTA--------------TATTTAGACC--C-G-C-CCAT-----TTTG-T---TTATTAT---------------------------------AC--TGCTTTATAAACTAT-AT-TT-AA--A-ATATACCTCTCA----AA--ATTCAGTTTTTTC-CACATT---TCTCG---AGA-CGAAAAA-----------------------AAAACTAA-TCT-GAAA-----c
gi|20 : A--G-AT-------TCAG--CAA--ATT--G----TTC-GGCATT---TCTTG---AGAT-GAAAAAC---AA---AGG-AGACTAA-T-AAAACTAA-TCT-GAAA-----C-C-ATTGTTT-G------------TGGTGTCT-AA-GTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAACGG--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATC
gi|21 : A--G-AT-------TCAG--CAA--ATT--G----TT--GGCATT---TCTTG---AGGATGAAAAAC---AA---AGG-AGACTAA-T-AAAACTAA-TCT-GAAA-----C-C-ATTGTTT-G------------TGGTGTCT-AA-GTA-------TAT-AAT-TTTA-ACTTTTGTTA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAAC-G--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATCctt
gi|19 : cATT---TGTTGTGAAGAT-GAAAGACTCTAAGTGAGG-AGTCTAT-T-AAAACTAA-TCTGGAGA-----A-C-ACTGTCT-GT-----------TGGTGTCTAAA-GTAT------TCT-AAT-ATTA-ACTTTCG-TG-CTTGACAACTA---A-TA-AGTATGC-TTTT---ACCGA----GAACGGCTG--AAAAG-GGGCCAG--AC-CAATG-G-TTGTT--TT---AATCT-CAct
gi|23 : tT---TCTCG---A-----AAAAAT---AA---TCG-GAACTATTT-AAAGT--A-TCT-AAAA-----A-TGATGGTCT-A------------TAGCGTGT-AC-ATA-------TAA-AAT-TTTA-ACTTTTG-TT-C------AGT----A--G-A-TATGC-TTTG---GTTGA----CCACGG--A--AAAAC-GGA-TAGAATC-CAATC-G-TTATT--TC---AC-TT-CATCat
gi|31 : TGAAAATG---GA---AGGCAGAC--AAT-AAA-CTAT-TC--GAGA-----ATC-ATTGTCT-G------------TGGTGTT---A-TTA-------TATCAAT-TTTA-ACTTTTG-TA-C------A-T----A-TA-A-T-Tct
gi|24 : ataC---AA---AGG-AGACTTC-T-GAACCTAT-TCA-GTAA-----C-C-ATTGTCTTG------------TAGTGCCA-AA-GTACAATGTATAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-T-TGC-TTGT---ATTGG----CAACGG--G--AAAAG-GGGTCAG--CTACAACA-T-ATGTT--TT---AA-CT-CATCag
gi|37 : AAATTAA-TCT-GAAA-----C-C-ATTGTTT-G------------TGGTGTCT-AC-GTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-ctt
gi|6 : TGTC---A-CTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTA
gi|5 : aatcagtattgttcattaaattcatattcataaacgagccagatattgtcatatttgcatcaatggctattgattaagaaagttataaagcaaccccgcccccaaatacaacctgcttcgaaagtgtgccgccagccgaggaaaggaaagttttttttcgggggggggggtcccgtcttattgttatttaggtacattataagtatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgaaaacgtattgatggttataacttattacagtccgcataataatatttccatatttagtggctacgtaatggatctataacgcgagtgtgctttaataaactaaaagttgtaaaagcgttttaagcatatttgcaaaTGTC---A-CTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTA
gi|33 : aatcagtattgttcattaaattcatattcataaacgagccagatattgtcatatttgcatcaatggctattgattaagaaagttataaagcaaccccgcccccaaatacaacctgcttcgaaagtgtgccgccagccgaggaaaggaaagttttttttcgggggggggggtcccgtcttattgttatttaggtacattataagtatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgaaaacgtattgatggttataacttattacagtccgcataataatatttccatatttagtggctacgtaatggatctataacgcgagtgtgctttaataaactaaaagttgtaaaagcgttttaagcatatttgcaaaTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATC
gi|32 : acTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATCct
gi|34 : acA-ACTTTTG-TA-C------AATTGATA-TG-A-T-TAC-TTTTCTTATTGA----CAACAG--G--AAAAG-GGGCCAG--CTCCATCA-G-TCGTT--TT---AA-AT-CAct
gi|36 : -A-T-TGC-TTTC---ATTGG----CAACTG--G--AAAAG-GGACAAG--CTTCAATA-G-TTCTT--TG---AG-TT-CATCacct
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TAGGTCTGAGTTTAGCTTGGTGTTCCTCAGAAATTGGAGATCCTATAGGCATTTGGTCCCGCCCAATATATGATACAATCTAGAAACGTGTGTCTCGACAGAAGGTTATGGGTTTAAATAATTAGAGCATTTTTATATATAATTGAAAACTTCCATTTTCGTATAGAGAAACCGTACATATTCATAATCCAATAAGAAAATATCAGCAAAATGTCAGTAAACCTCTCTATTAATGGAAACCTGTTTTTGTACTCATTGACCTATCTGAATAAGCTTGGTGTTAGGCAAAAGTATATCAACGTGATACGAAGCACTTGTCCATCTTTTAGACATGATTACGCTTTCAGACGTCACAGACTTTAAGACAAGTGTATTTGGAGTAATGTTGGCTGAGTATAGTATGTACAGCTACATGGCGGAATCTCAAAGAACAGGAAAATGGGGGGAGGGGTTGGATC
Unaligned ( gi|12 ): TTTTGTTAATTGATGACAAACATAATCTTTCATGAAGAATTATCAATCCTTGATGTTTATAATCAAATTCTATTAAAAAATAACAAATCTAAACCTGCCCGAAGCTAGTGTAATCCAAAGCGCGAGAATATATACTTTATTTTTGTGAGCACAATCCATTTGTGACATGTTTAATACATTTATAGTATCTCGGTTTGAACCAAACGTGCATATAATTTCGGTATTTAATTGAATACACTCTATTTGATTAAATTTAAAAATTGTACTGATTTTTTTTTCCAG
Unaligned ( gi|26 ): GCATATGCAGCATTTACATTCAGTGAATATCACACATTTATTTCTCCATTCATAGAAAAAGAAATAATGATAATGGCACGTGCTTTGACAACAAGGAAAACATCAAACCAATTCATATCCGAAATTGAATGTTGTCCT
Unaligned ( gi|38 ): CCCCCCCCCCCCCCCGGTTACGGCCTTGTATGCTATACATATGTTATGCGAAAGGGAAGGGGG
Unaligned ( gi|39 ): TATGTCTCTGCTGTAATCAACTAGCGTAAGGGTGACTGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|41 ): TGCTGTAATCAATAGCGTAAGGGTGACTGGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|42 ): CTATGGGTGTATATGTATATATTATGGGTATAGAAGATTCGGTTTT
Unaligned ( gi|43 ): ATACTTTTCATAGGATATTTTAATATTTTGTGCCAGGTACAT
Unaligned ( gi|44 ): CATCTACGTAGTTTTTAACGTGTTCAAAAAGTTTTTGTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 2222 11 77777777777777 1111 111 1 1111 222222 444444444444444444444444444444 111111 22222222 1111 11111 1111111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 222222222 333333333 22222222222 2 333333 1 11 1 333333333 3333333333333333 1 1 44444 1 6666666 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222222 333 1 1 111 2222222222 1 11 1111111 1 111 33333333333333333333333333333333333 111 1 1 1 1 111111 22222222 111 1 1111111 1111111 111111111111 1111111
lowQualScore : 3 6666 2222 33 2 0 3 4 0 55555555555555 6 8 7777 777 0 1 7777 0 333333 3 11 66 5 66 5 000000000000000000000000000000 5 5 666666 5 5 7 00000000 1 77 5 2222 44444 77 8888888 77 6 99 6 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 555555555 222222222 88888888888 0 3 88 8 000000 0 8 8 8 11 5 1 888888888 5555555555555555 0 2 2 0 7 11111 7 3 1 6 6 5555555 3 5 3 3 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 8 777 4 3 6666666 88 222 0 4 0 5 0 3 222 4 0 5 3333333333 1 5 1 5 0 55 4444444 0 5 3 333 5 888 4 0 99999999999999999999999999999999999 111 0 0 33 777 5 55 3 5 1 66 0 4 4 3 66 4 4 8 4 3 4 222222 9999 3 33333333 0 0 777 222 4 8 3 88 1111111 55 55 4444444 3 555 5555555 2 5555 444 999 2 2 66 2 33 2 2 0 2 3 6666 3 3 0 555555555555 3 6 1111111 2 2 5 5 2 777777 2 8888 5 2 2 5 2 555 6666 33 33 5 33 1 66 2 33 7777 2 2
lowQualScore : . .... .... .. . . . . . .............. . . .... ... . . .... . ...... . .. .. . .. . .............................. . . ...... . . . ........ . .. . .... ..... .. ....... .. . .. . ......................................................................................................................... ......... ......... ........... . . .. . ...... . . . . .. . . ......... ................ . . . . . ..... . . . . . ....... . . . . .................................................................................... . ... . . ....... .. ... . . . . . . ... . . . .......... . . . . . .. ....... . . . ... . ... . . ................................... ... . . .. ... . .. . . . .. . . . . .. . . . . . . ...... .... . ........ . . ... ... . . . .. ....... .. .. ....... . ... ....... . .... ... ... . . .. . .. . . . . . .... . . . ............ . . ....... . . . . . ...... . .... . . . . . ... .... .. .. . .. . .. . .. .... . .
lowQualScore : 0 5555 2222 22 5 8 2 2 2 55555555555555 4 0 0000 555 0 0 3333 7 111111 0 66 99 0 99 0 444444444444444444444444444444 7 7 444444 7 7 8 77777777 0 99 7 1111 00000 99 6666666 99 7 22 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 000000000 000000000 00000000000 9 4 66 4 888888 6 0 0 0 00 8 0 444444444 2222222222222222 4 6 2 6 3 77777 3 3 0 7 7 0000000 2 0 2 2 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 9 444 4 2 6666666 22 888 8 2 1 0 0 3 888 3 4 0 1111111111 7 7 0 0 9 77 8888888 0 0 2 888 0 888 0 9 66666666666666666666666666666666666 444 0 9 11 222 0 22 4 0 1 66 7 4 8 3 11 4 4 9 4 3 6 888888 4444 4 33333333 1 1 888 222 4 9 3 66 8888888 00 00 1111111 6 444 8888888 9 7777 777 222 7 7 44 9 99 7 7 3 7 1 5555 1 1 2 888888888888 1 2 3333333 9 9 3 3 7 777777 1 3333 3 5 5 3 9 000 1111 99 99 7 99 6 44 9 99 4444 9 9
consensus : TATTCGACATGCATGNACATGTACAGTATATACAG-TGCAT-TGGCGAATTCCGAGAGAAAGAA-GGGAGAANGGGGGGGGGTG-TCCAGGGGTTGG----ATCCCC---TTT-CTCTGGGACACCTA---TGTAGTTTTTTT-AAAAACATGTTCAAAAG--GTCTT-TG--C-TAT-------------TAA--AA---A---T--TAAC-T-A------GCACTGAATG-GTGAT-GGGTTTTCTTTC--------TGTACTAAA--CTT-TTACG----CATT----GC--AT-------GTACA--AT-T--TTACCTG-AA------CT-T--T--------------T---------T-AC--AAG-AC------T------TAC---G-------A-------GTACATG-TAT----------------ATG------TTCA----A----AAAT---------AAAAA-----TG----AATAATCAGTAT-TTTTCATTAAATTCATATTCATAAACGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCAA-TTA-----GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCNAATACAACCTGCTTCGAAAGTGTG--CC-CCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTT-ATAACTT-TT-ACAG-TTCCGCATAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGTTTTAG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAN-----GCGAA------------AACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGTCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTG-TTATTATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---CTGCTTGATAA---AG-GG-TT-AAG--AT-------TCAG--CAA--ATT--G----TTC-GGCATT---TCTCG---A-G-AT-GAAAAAC---AA---AGG-AGA-CT-AN-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
Reference ( family-2210 ) : TATTCGACATGCATGTACATGTGCAGTATATACAG-TGCAT-TGGCGAATTCCGAGAGAGGGNNNNGGGGAAGGGGGGGGGGTG-TCCAGGGGTTGG----ATCCCC---TTT-CTCTGGGACACCTA---TGTAGTTTTTTT-AAAAACATGTTCAAAAG--GTCTT-TG--C-TAT-------------TNA--AA---A---T--TAAC-T-A------GCACTGAATG-GTGAT-GGGTTTTCTTTC--------TGTACNAAA--CTT-TTACG----CATT----GC--AT-------GTACA--AT-T--TTACCTG-AA------CT-T--T--------------T---------T-AC--AAG-AC------T------TAC---G-------A-------GTACATA-TAT----------------AT-------TTCA----A----AAAT---------AAAAA-----TG----AATAATCAGTATCTTTTCATTAAATTCATATTCATAAACGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCNA-TTA-----GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCAAATACAACCTGCTTCGAAAGTGTGGCCCGCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGG-------TCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTT-ATAACTT-TT-ACAG-TTCCGC-TAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAANGCGTTTTAG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAN-----GCGAA------------AACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGCCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTG-TTATTATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---CTGCTTGATAA---AG-GG-TT-AAG--AT-------TCAG--CAA--ATT--G----TTC-GGCATT---TCTTG---A-G-AT-GAAAAAC---AA---AGG-AGA-CT-AA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
gi|1 : TATTCGATATGCATGGAAATGTA---TATATA----TGCAT-TGGCGAAT---GAAATAAAAAA------AAAGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCA---TTT-CTCTGGGACACCTAGTATGTAGTTTTTTTTAAAAAGATGTTCAAATA--GTCTT-TG--C-TAT-------------TCA--AA---A---T--TAAC-T-A------GCACTGAATG-GTGAT-GGATTTTCTTTC--------TGTATAAAA--CTT-TTACG----CATT----GC--AT-------GTACA--AT-T--TTACCTG-A-------CT-T--T--------------T---------T-AC--AAG-AC------T------TAC---G-------A-------GTACATA-TAT----------------AT-------TTCA----A----AAAT---------AAAAA-----TC----AATAATCAATAT-TTTTCATTAAATTCATAT--------GAGCCAAGA-TATTGTTCATATTT-GCAT--CAA-GGCAAATTA-----GATTAAGAAA---T-TA---------CCCCACCCCCCAATA-AACCTGCT-CGAA-GTGTG---C-CCAAG-C-GAGGAAAGGA-AAG-TTTTTTT-CGGGGGGGGGGGGGGGGGGTCCCGTCT-ATTGTTATTTAG-TACATT-TAAGTAT-------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGGTTTGAACG-AAACGTATATTGATGGTT-ATAACTT-TTTACAG-TTCCGCATAATATATTTTCCATATTTA-GT-G-CTACGTA-TAGATCTATAAACCGAATGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGTTT-AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAG-----GTGAA------------AACTATAT-ATTGCTTC-ATTAAAAA-GGTCATGAAA--TAATGT-CACATT-CTTTGTAAGC-GGG-AAAGCACGCACGAGGTCAGTTTA-ATGTTGCCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTA-TTATTATTA------TT----CATGAAAGAGC-A-C--CCTGGC-AAAA---CTGCTTGATAA---AG-GG-TT-AAG--AT-------TCAG--CAA--ATT--G----TTC-GGCATT---TCTTG---A-G-ATTGAAAAAC---AA---AGG-AGA-CT-AAAT-AAAACTAA-TC-T-GAAA-AC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTAG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
gi|10 : --AG-CATAT-----T----TCA-----GTGAA------------AAC---AT-ATTGCTTCCATTAAAAAAGGTCATGAAA--ATATGT-CAAGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCAGTTTA-ATGTTG-CTTTTGTGTTTAGA-C--C-C-CGCCAC-TTAT-TTATTATTA------TT----CATGAAAGAGCAA-C--CCTGGCGAAAA---CTGCTTGATAA---AG-GG-TTAAAG--AT-------TCAG--CAA--ATT--G----TTC-GGCATT---TCTTG---A-G-AT-GAAAAAC---AA---AGG--GA-CT-AA-T-AAAACTAA-TC-T-G-AA-CC-A----TT----------TGTC------------T-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CA
gi|11 : --AG-CATAT-----T----TCA-----GTGAA------------AAC---AT-ATTGCTTCCATTAAAAAAGGTCATGAAA--ATATGT-CAAGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCAGTTTA-ATGTTG-CTTTTGTGTTTAGA-C--C-C-CGCCAC-TTAT-TTATTATTA------TT----CATGAAAGAGCAA-C--CCTGGCGAAAA---CTGCTTGATAA---AG-GG-TTAAAG--AT-------TCAG--CAA--ATT--G----TTC-GGCATT---TCTTG---A-G-AT-GAAAAAC---AA---AGG--GA-CT-AA-T-AAAACTAA-TC-T-G-AA-CC-A----TT----------TGTC------------T-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CAct
gi|13 : CATTAAT--TGATGT-CACGTG-CTTTATAAAC-AGAGAAAGTA-G---GATATCTCTTCATATGTTGTCCTTTGTTTCTAGA-C--CTG-T-CCAT-ATTGTTTACCATTA------TT----CATGAAGGAA--------TTG--GA-------TGC----TAA---AG-AATTT-AAA--AA-------TCAG--CCT--ACT--T----TTC-GGCATTCCATCTTG---------------AC---AA---AG---AA-CT-AT-C-AAAACTAT-TCAT-AAAA-Cct
gi|14 : gaaaataaaatatatgtaatgattctaacgcaatttagaatttccTCCA--AAAATAATTCATGAAA--TAATGT-CATGTG-CTGTATAAAC-GGGGAAAGCACGAAAGAGGTCCATTGA-AGGTTGTCTTCTGTGTTTAGATC--C-G-T-CCAC-TTTGTTTATTATTA------TTCATGCATGAAATAAT-A-C--CATAGCGAAAA---CTGCTTGATAA---AATGG-TT-AAAT-AC-------CCAG--TTA--ATT--T----TTC-GGCATT---TCACG---T-T-AC-GAAATAA---AA---AGA-TGA-TT-Aatc
gi|15 : CTGAATG-GTGTT-GTGTTTTCTTTC--------TGAACCATA--CTT-TTATT----CATTATATGC--ATATTTTTGGTTCATTAT-T--TTTCCTGCAA------TT-TAAT--------------TAACGTAAAAT-AA--AAG-AC------A------TAT---GCGTATAGA-------GTACACG-TATTTTACAGCATTGC---ATGTGCGTTTTCA----A----AGCT---------AAAAA-----TGAATTAATAATAAGTGTTTCTTCA-TAAATtagacagttttcag
gi|16 : ACATGTG-----TATACAG-TGTATATGG---ATTCTGAGAAAAGGAA---------------GGGTT-TCTAGGGGTTGGCCCCACCCCCCTCTTT-CTCTGGGACATTTA---TGTAGTTTTT------AACATGCTCAAAAG--GTCTT-TG--T-TATAAATCTTTAATGATTA--AAAG-A---T--TAAC-T-A------GCACTCAATG-GTGAT-GATCTGAGTTTC--------TCTACTAGA--ATT-TTAAA----CATT----GC--AT-------GTGCA--aattataccagcccaaaa
gi|17 : ATTT-GT-ACAGATTTC---TGATATAATTTCT---TTCA-GC-GTCTGTATAA-------ATA--CCGAACTTGCTTTTTA--------T-AATT-AA-AGTTTTAAACGTG-TTAAG--GTATTTAATAATGC-ATTA-TCACGACG---A--ATTT--AA-t
gi|18 : aagTCTGGGACACCTA----GTA-----TGT-ATATAGATGT-CAAAAGTCGTTTTGTGGGCATATG------------TAACGAA---AGATT--TAAC-T-ACATGTAGCACTGGATGTGTGAT-GG--TTTCTTTCATCTCTCCTGTACTAAAAACTTATTATGAGATCA------GCTTAT-------GTACA--AT-T--CTACCTG-AAAAATACCT-T--TCA------------T---------TGACTTCAG-AC------T------TAC-------------------GTACAAACTAT----------------Aattagcattaaaaaaacccgatcacatacattatatgtattcagtgaaaaccatgcatactagtttccatttgataaaaaa
gi|19 : tATT---TGTTGTGAA-G-AT-GAAAGACTCTAAGTGAGG-AGT-CT-AT-T-AAAACTAA-TC-TGGAGA-AC-A----CTGTCT-GTTGGTGTC------------TAA-AGTAT------TCT-AAT-ATTA-ACTTTCG-TG-CTTGACAACTA---A-TA-AGTATGC-TTTT---ACCGA----GAACGGCTG--AAAAG-GGGCCAG--AC-CAATG-G-TTGTT--TT---AATCT-CA
gi|2 : t--GTCTT-TG--C-TTA-------------GCA--AA---A---T--TAAC-T-A------GCACTGAATG-GTGAT-GGATTTTCTTTC--------TGAAATAAA--CTT-TTACG----CATT----GC--AT-------GTACA--GGAT--TTACCTG-AA------CTAT--T--------------T---------T-AC--AAG-AC------T------TAC---G-------A-------GTACATA-TAT----------------AT-------TTCA----A----AAAT---------AAAAA-----TC----AATAATCAATAT---TTCATTA--TTC-TAT------ATGAGCCAAGA-TATTGT-CATATTTTGCAT--CAA-GACAA-T-A-----GATTAAGAAA---T-TA-------ACCCCCCCCCCCCAATA-AACCTGCT-CGAA-GTGTG--CC-CCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGAGGGTCCCGTCTTATTATTATTTAG-TACATTAT--GTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----ATCAGAGTTTGAACG-AAACGTATATTAATGGT--ATAACTTATT-ACAG-TTC-GC-ATATATATTTTCCATATTTGTGT-GGCTACGTA-TAGATCTATAACC-GAGTGTGCTTTTAT--------T-AA-TAAATAGTTGTAAAAGCGTTTTAG--ATATT------TGC-AATG-TCACTACG---AATAAAT--AA-CATGTATATTT----CAG-----TTGAA------------AACTATAT-ATTGCTCTTATTAAAA--GGTCATGAA---TAATGTTCACGTT-CTTTGTAATC-GGGAGAAGCA-GCACGAGGTCAGTTTA-ATGTTGCCTTTTGTG---ATA-C--C-G-C-CCAC-TTTA-TT-TTATT-------TT----CATGAA-GAGC-AAC--CCTGGCGAAAA---CTGCTTGATAA---AG-GG-TT-AAAGAAT-------TCAG--CAA--ATT--G----TTC-GGCATT---TCTTG---A-G-AT-G-AAAAC---AA---AGA-GAA-CTAAA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGT--------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGCTTTTT---ATTAG----CAACGG--G--AAAAG-GGGCTAA--CCACAATGTG-TTGTT--T----AA-CT-CATat
gi|20 : aAG--AT-------TCAG--CAA--ATT--G----TTC-GGCATT---TCTTG---A-G-AT-GAAAAAC---AA---AGG-AGA-CT-AA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAACGG--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATC
gi|21 : AG--AT-------TCAG--CAA--ATT--G----TT--GGCATT---TCTTG---AGG-AT-GAAAAAC---AA---AGG-AGA-CT-AA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTTGTTA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAAC-G--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATCctt
gi|22 : cTCAGTGTTTGAACG-AAACATATGTTGATGATT-Act
gi|23 : tgtgacctatattgtatattatatattatacT---TCTCG---A-------AAAAAT---AA---TCG-GAA-CT-AT-T-TAAAGTA--TC-T-AAAA-ATGA----TGGTCT-A-TAGCGTG------------T-A-CATA-------TAA-AAT-TTTA-ACTTTTG-TT-C------AGT----A--G-A-TATGC-TTTG---GTTGA----CCACGG--A--AAAAC-GGA-TAGAATC-CAATC-G-TTATT--TC---AC-TT-CATCacggatttctgtatttatttgagaaaacccccacaaacctattagattaagaaataaaatttgtaccgatttctggtttttttggggtttttttccagtagt
gi|24 : C---AA---AGG-AGA-CT-TC-T-GAACCTAT-TC-A-GTAA-CC-A----TTGTCTTG-TAGTGCC------------A-A-AGTACAATGTATAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-T-TGC-TTGT---ATTGG----CAACGG--G--AAAAG-GGGTCAG--CTACAACA-T-ATGTT--TT---AA-CT-CATCct
gi|25 : GGAAATCACGCACGAGGTCCATTTA--------------TATTTAGACC--C-G-C-CCAT-TTTG-T--TTATTA------T--------------------------------A---CTGCTTTATAAACTAT-AT-TT-AAA--ATATACCTCTCA----AA--ATTCAGTTTTTTC-CACATT---TCTCG---A-G-AC-GAAAAA-------------------------AAAACTAA-TC-T-GAAA-ctt
gi|27 : GAGGTGGTTCAGGGGTTGG----ATCCCC---TTT-CTTTGGAACAC-------------TTTTT-AAAA---TG------AG----CTT-TG--C-TAT-------------TAA--AA---A---GAGTAAC-TTA------GCACTGAATG-GTGAT-G
gi|28 : tcatggattttcaggtaaaggtattcgaaaatttcATTAGGATTTCAACG-AAACGTATGCTGACGG----TAA-------AGGA-TTCAGC---ATATATTATCCGT-CTAA-GT-G-C-ATGTAat
gi|29 : ataATTAGGGTTTGAACA-AAACATATGCTGATGATTAATAG-TT-CT-ACctaagtattcaaatagcagtaagctttatactgatttctaatttcattttt
gi|3 : tatgctgggcacttgtgacatatattttgtacataataatataTATTCGACATGCATGTACATGTACAGTATATATA--TGCAT-TGGCGAATTCCGAGAGAGAGAGAGAGAGAAGGGGGGGGGGTG-TCCAGGGGTTGG----ATCCCC---TTTTCCCTGGGTCACCTA---TGTAGTTTTT---AACAACATTTTCAAAAG--GTCTT-TG--C-TAT-------------AAA--AG---A---T--TAAC-T-A------GCACTGAATG-GTACCCGGGTATTCTTTT--------TGTACTAA---CTT-TTACA----CATA----AC--AT-------GAACA--AT-TATTTACTTG-A--------T-T--TCAAAAC--------T---------T-AC--GAGTACATATAGTA-----TAC---A-------T-------GTACATG-CATTTTCGCTGCATTGCACATGCTTT--TTCA----A----AAAT---------AAAAA-----TG----AATAATCAGTATCTTTTC-----ATTCATATttaatgtttgaagtactatt
gi|30 : ggctatgtgccgcggcccgtagtatattttttcccgtttcatgctagaatttacatggttcaattcatcatttgtacttttatgatttcaatgctacatggtgcattcattcactacagtctgagtttcagcttggggtttcctcattaactgaaattctcataggcatttggccccgtccacactatcatattatattcgagagaaggtacggttaaataatccaggctgtgtttgtatattattgaaaacttttaaattttgcacagcaatagccgtacgttacagtgtacatcgctgatattttacaatataaatcggaaagaatttcactagaacctctccattattgaactccataacctacctgaaataaaaggttaaatcacgtgatcctattgcattgtccgctgtttttgtaacataaactcgacttcaccatcatgaattttaattaagagtcATCTATAACC-GATTGTGCTTTTGATACACATGT-AACTAAA-A-TTGTAAACGTG-TTCAG--GTGCT------AGC-AGTG-TCGCTACGA--A-TTTAT--AA-CATGT-----
gi|31 : t-AT-GAAAATG---GA---AGGCAGA-C--AA-T-AAA-CTAT-TC-G-AGAA-TC-A----TTGTCT-G-TGGTGTT----------------ATTA-------TATCAAT-TTTA-ACTTTTG-TA-C------A-T----A-TA-A-T-Ta
gi|32 : atTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATCag
gi|33 : acTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATCct
gi|34 : acA-ACTTTTG-TA-C------AATTGATA-TG-A-T-TAC-TTTTCTTATTGA----CAACAG--G--AAAAG-GGGCCAG--CTCCATCA-G-TCGTT--TT---AA-AT-CAct
gi|35 : AGTGCGGCCC--CAAGGCTGAGAAAAGGACAGG-TTTTTTTTacct
gi|36 : -A-T-TGC-TTTC---ATTGG----CAACTG--G--AAAAG-GGACAAG--CTTCAATA-G-TTCTT--TG---AG-TT-CATCtattttgtgagcataatccaattgtgacatatatat
gi|37 : tacaatAAATTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-CGTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-ctt
gi|4 : CTTTC--------TGTACTAAA--CTT-TTACG----CATA----CC--AC-------GTAC---AT-T--CTACCTG-AA------AT-T--TATAAGCCTAAAAGAT---------T-TC--AAG-AC------TTGGCAATACATAG-------ATGCACATGTACATG-TAT-----------------T-------TTCACTGCATCGCAAGTGCTTTTTTCAAAAATAAAATG----AATAATCGATGTCTTTTCG-TA----CATGATTAT--ACAAGCCCAGATTTTTGT-CATATTT-TGATTACGAAAATAATTTAAAAATGATTTAAAAACTGTCTANNNNNNNNNNNNNNNNNNNNNNNNNAACCTG--TCTAAAATGTGGCC--CCGAGCCCGAAAAAATGA-ACGATTTTTTTT
gi|4 : ATCAGGGTTTGAACG-AAACGTATGC--AAAGTT-A----------ACAG-TTCCGC---ATATAATTTCCGTATTTA-GT-atttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataatcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|40 : ctttctgtactaaacttttacgcataccacgtacattctacctgaaatttataagcctaaaagatttcaagacttggcaatacatagatgcacatgtacatgtattttcactgcatcgcaagtgcttttttcaaaaataaaatgaataatcgatgtcttttcgtacatgattatacaagcccagatttttgtcatattttgattacgaaaataatttaaaaatgatttaaaaactgtctannnnnnnnnnnnnnnnnnnnnnnnnaacctgtctaaaatgtggccccgagcccgaaaaaatgaacgattttttttatttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataGTTTTGTT-AAAAATATGTTCAAATG--ATCTT-TG--C-TAT-------------TAA--AAAATA---T--TAACTT-A------GCACTGtgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|44 : CATCTA---CGTAGTTTTT------AACGTGTTCAAAAA--GTTTT-TG--T-TA
gi|5 : AATCAGTAT-TGTTCATTAAATTCATATTCATAAACGAGCCA-GA-TATTGT-CATATTT-GCAT--CAATGGCTA-TT------GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCAAATACAACCTGCTTCGAAAGTGTG--CCGCCA-G-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGG-------TCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACGTAT--TGATGGTT-ATAACTTATT-ACAG--TCCGCATAATAATATTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAA--------TAAACTAAA-AGTTGTAAAAGCGTTTTAAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT-----TA---CAC-----TCGTA------------CACTA-ATAATTGCTTTTATTA
gi|6 : AATCAGTAT-TGTTCATTAAATTCATATTCATAAACGAGCCA-GA-TATTGT-CATATTT-GCAT--CAATGGCTA-TT------GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCAAATACAACCTGCTTCGAAAGTGTG--CCGCCA-G-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGG-------TCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACGTAT--TGATGGTT-ATAACTTATT-ACAG--TCCGCATAATAATATTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAA--------TAAACTAAA-AGTTGTAAAAGCGTTTTAAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT-----TA---CAC-----TCGTA------------CACTA-ATAATTGCTTTTATTA
gi|7 : TCAGGGTTTGAACG-AAACGTATGC--AAAGTT-A----------ACAG-TTCCGC---ATATAATTTCCGTATTTA-GT-
gi|7 : CCGAATGTGCTTTTGA--------T-AATTAAA-AGCTGTATACGTGTTT-AA--ATATT----------AA-A-TTA--ACA---G-TATATGCAA-CATAT-----TTATTCAT-----GTGGA------------AATCATGC-ATTGCTTCCATTAAAAAAAGTCATGGAA--TAATGT-CCCGTA-CTTTGTAA-C-TGGGAAAGCTCGCAAGAGGTCCATTGA-ATGCTGTCCTTTG-GTTTAGACC--C-GCC-CCAA-TTTGTTTATTATTA------TT----CAT------------------GCAAAAA---CTGCTTGATAA---AG-GG-TTCAAT--AT-------TCAA--TTA--ATT--T----TTC-GGCCTT---TCTCG---A-G-AA-GAAAAAC---AG---AG---GA-CT-AT-G-AAAACTCT-TC-A-GAAA-CC-A----TTGCCT-G-TGGTGAC------------T-A-AGTA-------TAtgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtccgaatgtgcttttgataattaaaagctgtatacgtgtttaaatattaaattaacagtatatgcaacatatttattcatgtggaaatcatgcattgcttccattaaaaaaagtcatggaataatgtcccgtactttgtaactgggaaagctcgcaagaggtccattgaatgctgtcctttggtttagacccgccccaatttgtttattattattcatgcaaaaactgcttgataaagggttcaatattcaattaatttttcggcctttctcgagaagaaaaacagaggactatgaaaactcttcagaaaccattgcctgtggtgactaagtata
gi|8 : tcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtGTATAGTATGTACAGCTACAT--GGCGGAATCTCAAAGA----ACAGGAAAATGGGGGG---------AGGGGTTGG----ATC
gi|9 : taggtctgagtttagcttggtgttcctcagaaattggagatcctataggcatttggtcccgcccaatatatgatacaatctagaaacgtgtgtctcgacagaaggttatgggtttaaataattagagcatttttatatataattgaaaacttccattttcgtatagagaaaccgtacatattcataatccaataagaaaatatcagcaaaatgtcagtaaacctctctattaatggaaacctgtttttgtactcattgacctatctgaataagcttggtgttaggcaaaagtatatcaacgtgatacgaagcacttgtccatcttttagacatgattacgctttcagacgtcacagactttaagacaagtgtatttggagtaatgttggctgaATT------TGC-AATGGTCACTACGGACA-TAAAT--AAGCATGT-----G----TATATGCAGCAAATATTATCAGGTTAACTATGT-ATTTGTTCCATATAAGAAGGTCATGAAAAATAAAGT-CACGTTTCTTTGTAAGCCGGGGAAAGCACGCACGAGGT-------------G---TTTGTGTTTAGA-CGCC-G-C-CCACAGTTG-TT--TATTAAAATATTT----CATGAAAGAAC-A-GAGCCTGGCGAAAAACCTTGCTTGATAAT--AG-GGCTT-AAG--AT-------TCAGAACAAGAATT--------TCAGGCATT---TCTTG---A-GAAC-GAAAAA----AA---AGG-AGACCT-AC-TGAAAATTAATTC-T-GAAATCC-GCACTCTGTCT-G-T-ATGTCCGCTTCTGATGTT-A-A-TC-------TAT-ACTATATA-ACTTTCGATAGC------ACT----A-TAGA-T-AGC--TTT---ATTGGATAATAGCGA--GATAAAAG-GGGCCAG--CTACTATA-GTTTGTTGATCCATAA-CTACATC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTTGTTAATTGATGACAAACATAATCTTTCATGAAGAATTATCAATCCTTGATGTTTATAATCAAATTCTATTAAAAAATAACAAATCTAAACCTGCCCGAAGCTAGTGTAATCCAAAGCGCGAGAATATATACTTTATTTTTGTGAGCACAATCCATTTGTGACATGTTTAATACATTTATAGTATCTCGGTTTGAACCAAACGTGCATATAATTTCGGTATTTAATTGAATACACTCTATTTGATTAAATTTAAAAATTGTACTGATTTTTTTTTCCAG
Unaligned ( gi|26 ): GCATATGCAGCATTTACATTCAGTGAATATCACACATTTATTTCTCCATTCATAGAAAAAGAAATAATGATAATGGCACGTGCTTTGACAACAAGGAAAACATCAAACCAATTCATATCCGAAATTGAATGTTGTCCT
Unaligned ( gi|38 ): CCCCCCCCCCCCCCCGGTTACGGCCTTGTATGCTATACATATGTTATGCGAAAGGGAAGGGGG
Unaligned ( gi|39 ): TATGTCTCTGCTGTAATCAACTAGCGTAAGGGTGACTGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|41 ): TGCTGTAATCAATAGCGTAAGGGTGACTGGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|42 ): CTATGGGTGTATATGTATATATTATGGGTATAGAAGATTCGGTTTT
Unaligned ( gi|43 ): ATACTTTTCATAGGATATTTTAATATTTTGTGCCAGGTACAT
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222 11 1 11111111 22222222 111111 1111 111 1 1111 222222 22222222222222 1111111111 111111 22222222 1111 3333333333333 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111 1 333333 1 11 1 333333333 3333333333333333 1 1 1 3333333 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4444444444 1 1 111 2222222222 111111 1111111 1 111 33333333333333333333333333333333333 111 1 11111 1 111111 22222222222 1 111111111111 1111111
lowQualScore : 1 2 333 2222 33 2 0 00000000 99999999 4 555555 7777 777 0 1 7777 0 333333 3 11 66 5 66 5 99999999999999 5 77 77 9999999999 5 5 666666 5 5 7 00000000 77 5 2222 1 77 1111111111111 6 99 6 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 7777 1 5 88 8 000000 0 8 8 8 11 5 1 888888888 5555555555555555 0 1 2 0 7 6 6 1 3 1 6 6 0000000 3 5 3 3 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8 777 1111111111 66 0 7 3 44 4 0 5 0 3 222 4 0 5 3333333333 1 5 8 5 666666 4444444 0 5 3 333 5 888 4 0 99999999999999999999999999999999999 111 0 0 33 777 5 55 3 5 1 66 0 4 7 8 66 11111 4 3 4 1 66 777777 9999 11111111111 0 0 88888 4 4 8 3 88 55 2 55 3 3 555 0 333 2 5555 444 999 2 2 44 2 33 2 2 0 2 3 6666 3 3 0 555555555555 3 6 1111111 2 2 5 5 2 777777 2 8888 5 2 2 5 2 555 6666 33 33 5 33 1 66 2 33 7777 2 2
lowQualScore : . . ... .... .. . . ........ ........ . ...... .... ... . . .... . ...... . .. .. . .. . .............. . .. .. .......... . . ...... . . . ........ .. . .... . .. ............. . .. . ................................................................................................................................................... . .... . . .. . ...... . . . . .. . . ......... ................ . . . . . . . . . . . . ....... . . . . .................................................................................... . ... .......... .. . . . .. . . . . . ... . . . .......... . . . . ...... ....... . . . ... . ... . . ................................... ... . . .. ... . .. . . . .. . . . . .. ..... . . . . .. ...... .... ........... . . ..... . . . . .. .. . .. . . ... . ... . .... ... ... . . .. . .. . . . . . .... . . . ............ . . ....... . . . . . ...... . .... . . . . . ... .... .. .. . .. . .. . .. .... . .
lowQualScore : 0 5 555 2222 22 5 0 88888888 88888888 5 222222 0000 555 0 0 3333 7 111111 0 66 99 0 99 0 44444444444444 7 99 99 0000000000 7 7 444444 7 7 8 77777777 99 7 1111 9 99 4444444444444 7 22 7 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 8 0000 4 7 66 4 888888 6 0 0 0 00 8 4 444444444 2222222222222222 4 0 2 6 3 7 7 5 3 0 7 7 0000000 2 0 2 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 444 2222222222 33 1 4 4 11 2 1 0 0 3 888 3 4 0 1111111111 7 7 4 7 444444 8888888 0 0 2 888 0 888 0 9 66666666666666666666666666666666666 444 0 9 11 222 0 22 4 0 1 66 7 4 9 9 11 33333 4 3 4 9 11 222222 4444 44444444444 1 1 66666 4 4 9 3 66 00 4 00 6 6 888 7 666 9 7777 777 222 7 7 99 9 99 7 7 3 7 1 5555 1 1 2 888888888888 1 2 3333333 9 9 3 3 7 777777 1 3333 3 5 5 3 9 000 1111 99 99 7 99 6 44 9 99 4444 9 9
consensus : TATTCGACATGCATGNANATGTACA-GTATATACAG-TGCAT-TGGCG-AATTCCGAGANAAAGA-A-GGGAGAANGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCC---TTT-CTCTGGGACACCTA---TGTAGTTTTTTT-AAAAACATGTTCAAAAG--GTCTT-TG--C-T--------------AT-TA--A--AA---A---T--TAAC-T-A------GCACTGAATG-GTGAT-GGGTTTTCTTTC--------TGTACTAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT-T--TTACCTG-AA------CT-T--T--------------T---------T-AC--AAGACT------TAC-------GA-----------------GTACATGTATTTT-------T-----ATGT-TT--TTCA-----------------------AAAATAAAAATG----AATAATCAGTAT-TT-TTCATTAAATTCATATTCATAAACGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCAA-TTA-----GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCNAATACAACCTGCTTCGAAAGTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTTATAACTT-TT-ACAG-TTCCGCATAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TTT-AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAN-----GCGAA------------AACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGTCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTG-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTCGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AN-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
Reference ( family-2210 ) : TATTCGACATGCATGNACATGTACA-GTATATACAG-TGCAT-TGGCG-AATTCCGAGAGAAAGA-A-GGGAGAANGGGGGGGGGTG-TCCAGGGGTTGG----ATCCCC---TTT-CTCTGGGACACCTA---TGTAGTTTTTTT-AAAAACATGTTCAAAAG--GTCTT-TG--C-T--------------AT-TA--A--AA---A---T--TAAC-T-A------GCACTGAATG-GTGAT-GGGTTTTCTTTC--------TGTACTAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT-T--TTACCTG-AA------CT-T--T--------------T---------T-AC--AAGACT------TAC-------GA-----------------GTACATGTAT----------------ATG------TTCA-----------------------AAAATAAAAATG----AATAATCAGTAT-TT-TTCATTAAATTCATATTCATAAACGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCAA-TTA-----GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCNAATACAACCTGCTTCGAAAGTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTTATAACTT-TT-ACAG-TTCCGCATAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TTT-AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAN-----GCGAA------------AACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGTCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTG-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTCGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AN-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
gi|1 : TATTCGATATGCATGGAAATGTA----TATATA----TGCAT-TGGCG-AAT---GAAATAAAAA-A------AAAGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCA---TTT-CTCTGGGACACCTAGTATGTAGTTTTTTTTAAAAAGATGTTCAAATA--GTCTT-TG--C-T--------------AT-TC--A--AA---A---T--TAAC-T-A------GCACTGAATG-GTGAT-GGATTTTCTTTC--------TGTATAAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT-T--TTACCTG-A-------CT-T--T--------------T---------T-AC--AAGACT------TAC-------GA-----------------GTACATATAT----------------AT-------TTCA-----------------------AAAATAAAAATC----AATAATCAATAT-TT-TTCATTAAATTCATAT--------GAGCCAAGA-TATTGTTCATATTT-GCAT--CAA-GGCAAATTA-----GATTAAGAAA---T-TA---------CCCCACCCCCCAATA-AACCTGCT-CGAA-GTGT-G-CCC-AAG-C-GAGGAAAGGA-AAG-TTTTTTT-CGGGGGGGGGGGGGGGGGGTCCCGTCT-ATTGTTATTTAG-TACATT-TAAGTAT-------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGGTTTGAACG-AAACGTATATTGATGGTTATAACTT-TTTACAG-TTCCGCATAATATATTTTCCATATTTA-GT-G-CTACGTA-TAGATCTATAAACCGAATGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TT--AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAG-----GTGAA------------AACTATAT-ATTGCTTC-ATTAAAAA-GGTCATGAAA--TAATGT-CACATT-CTTTGTAAGC-GGG-AAAGCACGCACGAGGTCAGTTTA-ATGTTGCCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTA-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGC-AAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-ATTGAAAAAC---AA---AGG-AGA-CT-AAAT-AAAACTAA-TC-T-GAAA-AC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTAG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
gi|10 : --AG-CATAT-----T----TCA-----GTGAA------------AAC---AT-ATTGCTTCCATTAAAAAAGGTCATGAAA--ATATGT-CAAGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCAGTTTA-ATGTTG-CTTTTGTGTTTAGA-C--C-C-CGCCAC-TTAT-T-TAT--TATTA------TT----CATGAAAGAGCAA-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TTAAAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG--GA-CT-AA-T-AAAACTAA-TC-T-G-AA-CC-A----TT----------TGTC------------T-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CA
gi|11 : --AG-CATAT-----T----TCA-----GTGAA------------AAC---AT-ATTGCTTCCATTAAAAAAGGTCATGAAA--ATATGT-CAAGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCAGTTTA-ATGTTG-CTTTTGTGTTTAGA-C--C-C-CGCCAC-TTAT-T-TAT--TATTA------TT----CATGAAAGAGCAA-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TTAAAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG--GA-CT-AA-T-AAAACTAA-TC-T-G-AA-CC-A----TT----------TGTC------------T-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CAct
gi|13 : CATTAAT--TGATGT-CACGTG-CTTTATAAAC-AGAGAAAGTA-G---GATATCTCTTCATATGTTGTCCTTTGTTTCTAGA-C--CTG-T-CCAT-ATTGTT-TAC--CATTA------TT----CATGAAGGAA--------TTG--GA--------TGC----TAA-AG-AATTT-AAA--AATCAG--CCT--ACTTTTC-GGCATTCCATCTTG------------AC---AA---AG---AA-CT-AT-C-AAAACTAT-TCAT-AAAA-Cct
gi|14 : gaaaataaaatatatgtaatgattctaacgcaatttagaatttccTCCA--AAAATAATTCATGAAA--TAATGT-CATGTG-CTGTATAAAC-GGGGAAAGCACGAAAGAGGTCCATTGA-AGGTTGTCTTCTGTGTTTAGATC--C-G-T-CCAC-TTTGTT-TAT--TATTA------TTCATGCATGAAATAAT-A-C--CATAGCGAAAA---C-TGCTTGATAA-AATGG-TT-AAAT-ACCCAG--TTA--ATTTTTC-GGCATT---TCACGT-T-AC-GAAATAA---AA---AGA-TGA-TT-Aatc
gi|15 : CTGAATG-GTGTT-GTGTTTTCTTTC--------TGAACCATA--CTT-TTATT----CATTAT--ATGCATATTTTTGGTTCATTAT-T--TTTCCTGCAA------TT-TAAT--------------TAACGTAAAAT-AA--AAGACA------TATGCGTATAGA-----------------GTACACGTATTTTACAGCATTGC---ATGTGCGTTTTCA-----------------------AAGCTAAAAATGAATTAATAATAAGTGT-TTCTTCA-TAAATtagacagttttcag
gi|16 : ACATGTGTATACAG-TGTATATGG----ATTCTGAGAAAAGGA-A-GGG--------------TT-TCTAGGGGTTGGCCCCACCCCCCTCTTT-CTCTGGGACATTTA---TGTAGTTTTT------AACATGCTCAAAAG--GTCTT-TG--T-TATAAATCTTTAATGAT-TA--A--AAG--A---T--TAAC-T-A------GCACTCAATG-GTGAT-GATCTGAGTTTC--------TCTACTAGA--ATT-TTAAA----CATTGC--ATGTGCA-------------aattataccagcccaaaa
gi|17 : ATTT-GT-ACAGATTTC---TGATATAATTTCT---TTCA-GC-GTCTGTATAA-------ATA--CCGAACTTGCTTTTTA--------T-AATT-AA-AGTTTTAAA--CGT-GTTAAG--GTATTTAATAATGC-ATTA-TCACGACG---A--ATTT--AA-t
gi|18 : aagTCTGGGACACCTA----GTA-----TGT-ATATAGATGT-CAAAAGTCGTTTTGTGGGCAT--------------ATGTA--ACGAA---AGATT--TAAC-T-ACATGTAGCACTGGATGTGTGAT-GG--TTTCTTTCATCTCTCCTGTACTAAAAACTTATTATGAGATCA--GCTTATGTACA-------------AT-T--CTACCTG-AAAAATACCT-T--TCA------------T---------TGACTTCAGACT------TAC--------------------------GTACAattagcattaaaaaaacccgatcacatacattatatgtattcagtgaaaaccatgcatactagtttccatttgataaaaaa
gi|19 : tA-G-AT-GAAAGACTCTAAGTGAGG-AGT-CT-AT-T-AAAACTAA-TC-TGGAGA-AC-A----CTGTCT-GTTGGTGTC------------TAA-AGTAT------TCT-AAT-ATTA-ACTTTCG-TG-CTTGACAACTA---A-TA-AGTATGC-TTTT---ACCGA----GAACGGCTG--AAAAG-GGGCCAG--AC-CAATG-G-TTGTT--TT---AATCT-CAaactata
gi|2 : tatttgttgtga--GTCTT-TG--C-T-----------------TAGCA--AA---A---T--TAAC-T-A------GCACTGAATG-GTGAT-GGATTTTCTTTC--------TGAAATAAA--CTT-TTACG----CATTGC--ATGTACA-------------GGAT--TTACCTG-AA------CTAT--T--------------T---------T-AC--AAGACT------TAC-------GA-----------------GTACATATAT----------------AT-------TTCA-----------------------AAAATAAAAATC----AATAATCAATAT-TT---CATTA--TTC-TAT------ATGAGCCAAGA-TATTGT-CATATTTTGCAT--CAA-GACAA-T-A-----GATTAAGAAA---T-TA-------ACCCCCCCCCCCCAATA-AACCTGCT-CGAA-GTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGAGGGTCCCGTCTTATTATTATTTAG-TACATTAT--GTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----ATCAGAGTTTGAACG-AAACGTATATTAATGGT-ATAACTTATT-ACAG-TTC-GCATA-TATATTTTCCATATTTGTGT-GGCTACGTA-TAGATCTATAACC-GAGTGTGCTTTTAT--------T-AA-TAAATAGTTGTAAAAGCGT-TTT-AG--ATATT------TGC-AATG-TCACTACG---AATAAAT--AA-CATGTATATTT----CAG-----TTGAA------------AACTATAT-ATTGCTCTTATTAAAA--GGTCATGAA---TAATGTTCACGTT-CTTTGTAATC-GGGAGAAGCA-GCACGAGGTCAGTTTA-ATGTTGCCTTTTGTG---ATA-C--C-G-C-CCAC-TTTA-T-T-T--TATT-------TT----CATGAA-GAGC-AAC--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAAGAATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-G-AAAAC---AA---AGA-GAA-CTAAA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGT--------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGCTTTTT---ATTAG----CAACGG--G--AAAAG-GGGCTAA--CCACAATGTG-TTGTT--T----AA-CT-CATat
gi|20 : aAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAACGG--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATC
gi|21 : AG--ATTCAG--CAA--ATTGTT--GGCATT---TCTTGAGG-AT-GAAAAAC---AA---AGG-AGA-CT-AA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTTGTTA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAAC-G--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATCctt
gi|22 : cTCAGTGTTTGAACG-AAACATATGTTGATGATTAct
gi|23 : tgtgacctatattgtatattatatattatacT---TCTCGA-------AAAAAT---AA---TCG-GAA-CT-AT-T-TAAAGTA--TC-T-AAAA-ATGA----TGGTCT-A-TAGCGTG------------T-A-CATA-------TAA-AAT-TTTA-ACTTTTG-TT-C------AGT----A--G-A-TATGC-TTTG---GTTGA----CCACGG--A--AAAAC-GGA-TAGAATC-CAATC-G-TTATT--TC---AC-TT-CATCacggatttctgtatttatttgagaaaacccccacaaacctattagattaagaaataaaatttgtaccgatttctggtttttttggggtttttttccagtagt
gi|24 : C---AA---AGG-AGA-CT-TC-T-GAACCTAT-TC-A-GTAA-CC-A----TTGTCTTG-TAGTGCC------------A-A-AGTACAATGTATAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-T-TGC-TTGT---ATTGG----CAACGG--G--AAAAG-GGGTCAG--CTACAACA-T-ATGTT--TT---AA-CT-CATCct
gi|25 : GGAAATCACGCACGAGGTCCATTTA--------------TATTTAGA-C--CCG-C-CCAT-TTTG-TTTATTATACTGC-----TT----TATAAA--------C--TATATTTAAAA---TATACCTC-----------TC-AAA--ATTCAG--T-----TTTTTC-CACATT---TCTCGA-G-AC-GAAAAA-------------------------AAAACTAA-TC-T-GAAA-ctt
gi|27 : GAGGTGGTTCAGGGGTTGG----ATCCCC---TTT-CTTTGGAACAC-------------TTTTT-AAAA---TG------AG----CTT-TG--C-T--------------AT-TA--A--AA---A---GAGTAAC-TTA------GCACTGAATG-GTGAT-G
gi|28 : tcatggattttcaggtaaaggtattcgaaaatttcATTAGGATTTCAACG-AAACGTATGCTGACGG---TAA-------AGGA-TTCAGCAT-ATAT--TATCCGT-CTAA-GT-G-C-ATGTAat
gi|29 : ataATTAGGGTTTGAACA-AAACATATGCTGATGATTA----------ATAG-TTCTACTTAATGTctaagtattcaaatagcagtaagctttatactgatttctaatttcattttt
gi|3 : tatgctgggcacttgtgacatatattttgtacataataatataTATTCGACATGCATGTACATGTACA-GTATATATA--TGCAT-TGGCG-AATTCCGAGAGAGAGAGA-GAGAGAAGGGGGGGGGGTG-TCCAGGGGTTGG----ATCCCC---TTTTCCCTGGGTCACCTA---TGTAGTTTTT---AACAACATTTTCAAAAG--GTCTT-TG--C-T--------------AT-AA--A--AG---A---T--TAAC-T-A------GCACTGAATG-GTACCCGGGTATTCTTTT--------TGTACTAA---CTT-TTACA----CATAAC--ATGAACA-------------AT-TATTTACTTG-A-------------T--------------T---------T--C--AAAACT------TAC-------GAGTACATATAGTATACATGTACATGCATTTTCGCTGCATTGCACATGCTTT--TTCA-----------------------AAAATAAAAATG----AATAATCAGTATCTT-TTC-----ATTCATATttgaagtactatt
gi|30 : ggctatgtgccgcggcccgtagtatattttttcccgtttcatgctagaatttacatggttcaattcatcatttgtacttttatgatttcaatgctacatggtgcattcattcactacagtctgagtttcagcttggggtttcctcattaactgaaattctcataggcatttggccccgtccacactatcatattatattcgagagaaggtacggttaaataatccaggctgtgtttgtatattattgaaaacttttaaattttgcacagcaatagccgtacgttacagtgtacatcgctgatattttacaatataaatcggaaagaatttcactagaacctctccattattgaactccataacctacctgaaataaaaggttaaatcacgtgatcctattgcattgtccgctgtttttgtaacataaactcgacttcaccatcatgaattttaattaagagtcATCTATAACC-GATTGTGCTTTTGATACACATGT-AACTAAA-A-TTGTAAA--CGTGTTC-AG--GTGCT------AGC-AGTG-TCGCTACGA--A-TTTAT--AA-CATGT-----
gi|31 : t-AT-GAAAATG---GA---AGGCAGA-C--AA-T-AAA-CTAT-TC-G-AGAA-TC-A----TTGTCT-G-TGGTGTT----------------ATTA-------TATCAAT-TTTA-ACTTTTG-TA-C------A-T----A-TA-A-T-Ta
gi|32 : atTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATCag
gi|33 : acTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATCct
gi|34 : acA-ACTTTTG-TA-C------AATTGATA-TG-A-T-TAC-TTTTCTTATTGA----CAACAG--G--AAAAG-GGGCCAG--CTCCATCA-G-TCGTT--TT---AA-AT-CAct
gi|35 : AGTGC-GGCCCCAAGGCTGAGAAAAGGACAGG-TTTTTTTTacct
gi|36 : -A-T-TGC-TTTC---ATTGG----CAACTG--G--AAAAG-GGACAAG--CTTCAATA-G-TTCTT--TG---AG-TT-CATCtattttgtgagcataatccaattgtgacatatatat
gi|37 : tacaatAAATTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-CGTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-ctt
gi|4 : CTTTC--------TGTACTAAA--CTT-TTACG----CATACC--ACGTAC--------------AT-T--CTACCTG-AA------AT-T--TATAAGCCTAAAAGAT---------T-TC--AAGACTTGGCAATACATA----GAT----------------GCACATGTAC----------------ATGTATT--TTCACTGCATCGCAAGTGCTTTTTTCAAAAAT-AAAATG----AATAATCGATGTCTT-TTCG-TA----CATGATTAT--ACAAGCCCAGATTTTTGT-CATATTT-TGATTACGAAAATAATTTAAAAATGATTTAAAAACTGTCTANNNNNNNNNNNNNNNNNNNNNNNNNAACCTG--TCTAAAATGTGG-CCCCGAGCCCGAAAAAATGA-ACGATTTTTTTT
gi|4 : ATCAGGGTTTGAACG-AAACGTATGC--AAAGTTA----------ACAG-TTCCGC---ATATAATTTCCGTATTTA-GT-atttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataatcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|40 : ctttctgtactaaacttttacgcataccacgtacattctacctgaaatttataagcctaaaagatttcaagacttggcaatacatagatgcacatgtacatgtattttcactgcatcgcaagtgcttttttcaaaaataaaatgaataatcgatgtcttttcgtacatgattatacaagcccagatttttgtcatattttgattacgaaaataatttaaaaatgatttaaaaactgtctannnnnnnnnnnnnnnnnnnnnnnnnaacctgtctaaaatgtggccccgagcccgaaaaaatgaacgattttttttatttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataGTTTTGTT-AAAAATATGTTCAAATG--ATCTT-TG--C-T--------------AT-TA--A--AAAATA---T--TAACTT-A------GCACTGtgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|44 : CATCTA---CGTAGTTTTT------AACGTGTTCAAAAA--GTTTT-TG--T-T--------------A
gi|5 : AATCAGTAT-TG-TTCATTAAATTCATATTCATAAACGAGCCA-GA-TATTGT-CATATTT-GCAT--CAATGGCTA-TT------GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCAAATACAACCTGCTTCGAAAGTGT-G-CCGCCAG-CCGAGGAAAGGA-AAG-TTTTTTTTC-------GGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACGTAT--TGATGGTTATAACTTATT-ACAG--TCCGCATAATAATATTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAA--------TAAACTAAA-AGTTGTAAAAGCGT-TTT-AAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT-----TA---CAC-----TCGTA------------CACTA-ATAATTGCTTTTATTA
gi|6 : AATCAGTAT-TG-TTCATTAAATTCATATTCATAAACGAGCCA-GA-TATTGT-CATATTT-GCAT--CAATGGCTA-TT------GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCAAATACAACCTGCTTCGAAAGTGT-G-CCGCCAG-CCGAGGAAAGGA-AAG-TTTTTTTTC-------GGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACGTAT--TGATGGTTATAACTTATT-ACAG--TCCGCATAATAATATTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAA--------TAAACTAAA-AGTTGTAAAAGCGT-TTT-AAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT-----TA---CAC-----TCGTA------------CACTA-ATAATTGCTTTTATTA
gi|7 : TCAGGGTTTGAACG-AAACGTATGC--AAAGTTA----------ACAG-TTCCGC---ATATAATTTCCGTATTTA-GT-
gi|7 : CCGAATGTGCTTTTGA--------T-AATTAAA-AGCTGTATACGTGT-TT--AA--ATATT----------AA-A-TTA--ACA---G-TATATGCAA-CATAT-----TTATTCAT-----GTGGA------------AATCATGC-ATTGCTTCCATTAAAAAAAGTCATGGAA--TAATGT-CCCGTA-CTTTGTAA-C-TGGGAAAGCTCGCAAGAGGTCCATTGA-ATGCTGTCCTTTG-GTTTAGACC--C-GCC-CCAA-TTTGTT-TAT--TATTA------TT----CAT------------------GCAAAAA---C-TGCTTGATAA-AG-GG-TTCAAT--ATTCAA--TTA--ATTTTTC-GGCCTT---TCTCGA-G-AA-GAAAAAC---AG---AG---GA-CT-AT-G-AAAACTCT-TC-A-GAAA-CC-A----TTGCCT-G-TGGTGAC------------T-A-AGTA-------TAtgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtccgaatgtgcttttgataattaaaagctgtatacgtgtttaaatattaaattaacagtatatgcaacatatttattcatgtggaaatcatgcattgcttccattaaaaaaagtcatggaataatgtcccgtactttgtaactgggaaagctcgcaagaggtccattgaatgctgtcctttggtttagacccgccccaatttgtttattattattcatgcaaaaactgcttgataaagggttcaatattcaattaatttttcggcctttctcgagaagaaaaacagaggactatgaaaactcttcagaaaccattgcctgtggtgactaagtata
gi|8 : tcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtGTATA-GTATGTACAGCTACAT--GGCGGAATCTC-----AAAGA-ACAGGAAAATGGGGGG---------AGGGGTTGG----ATC
gi|9 : taggtctgagtttagcttggtgttcctcagaaattggagatcctataggcatttggtcccgcccaatatatgatacaatctagaaacgtgtgtctcgacagaaggttatgggtttaaataattagagcatttttatatataattgaaaacttccattttcgtatagagaaaccgtacatattcataatccaataagaaaatatcagcaaaatgtcagtaaacctctctattaatggaaacctgtttttgtactcattgacctatctgaataagcttggtgttaggcaaaagtatatcaacgtgatacgaagcacttgtccatcttttagacatgattacgctttcagacgtcacagactttaagacaagtgtatttggagtaatgttggctgaATT------TGC-AATGGTCACTACGGACA-TAAAT--AAGCATGT-----G----TATATGCAGCAAATATTATCAGGTTAACTATGT-ATTTGTTCCATATAAGAAGGTCATGAAAAATAAAGT-CACGTTTCTTTGTAAGCCGGGGAAAGCACGCACGAGGT-------------GT---TTGTGTTTAGA-CGCC-G-C-CCACAGTTG-T-T----TATTAAAATATTT----CATGAAAGAAC-A-GAGCCTGGCGAAAAACCT-TGCTTGATAATAG-GGCTT-AAG--ATTCAGAACAAGAATT--TCAGGCATT---TCTTGA-GAAC-GAAAAA----AA---AGG-AGACCT-AC-TGAAAATTAATTC-T-GAAATCC-GCACTCTGTCT-G-T-ATGTCCGCTTCTGATGTT-A-A-TC-------TAT-ACTATATA-ACTTTCGATAGC------ACT----A-TAGA-T-AGC--TTT---ATTGGATAATAGCGA--GATAAAAG-GGGCCAG--CTACTATA-GTTTGTTGATCCATAA-CTACATC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTTGTTAATTGATGACAAACATAATCTTTCATGAAGAATTATCAATCCTTGATGTTTATAATCAAATTCTATTAAAAAATAACAAATCTAAACCTGCCCGAAGCTAGTGTAATCCAAAGCGCGAGAATATATACTTTATTTTTGTGAGCACAATCCATTTGTGACATGTTTAATACATTTATAGTATCTCGGTTTGAACCAAACGTGCATATAATTTCGGTATTTAATTGAATACACTCTATTTGATTAAATTTAAAAATTGTACTGATTTTTTTTTCCAG
Unaligned ( gi|26 ): GCATATGCAGCATTTACATTCAGTGAATATCACACATTTATTTCTCCATTCATAGAAAAAGAAATAATGATAATGGCACGTGCTTTGACAACAAGGAAAACATCAAACCAATTCATATCCGAAATTGAATGTTGTCCT
Unaligned ( gi|38 ): CCCCCCCCCCCCCCCGGTTACGGCCTTGTATGCTATACATATGTTATGCGAAAGGGAAGGGGG
Unaligned ( gi|39 ): TATGTCTCTGCTGTAATCAACTAGCGTAAGGGTGACTGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|41 ): TGCTGTAATCAATAGCGTAAGGGTGACTGGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|42 ): CTATGGGTGTATATGTATATATTATGGGTATAGAAGATTCGGTTTT
Unaligned ( gi|43 ): ATACTTTTCATAGGATATTTTAATATTTTGTGCCAGGTACAT
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222 11 22222222 111111 1111 222 1111 1111111 333333333333333333333333333333333 1 111111 22222222 1111 33333333333333333 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 1 333333 1 11 1 333333333 3333333333333333 1 1 1 3333333 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4444444444 1 1 111 2222222222 111111 1111111 1 111 33333333333333333333333333333333333 111 1 11111 1 111111 22222222222 1 111111111111 1111111
lowQualScore : 1 1 333 2222 33 2 0 3 66 0 1 99999999 4 222222 7777 777 1 7777 666 4444444 3 11 66 5 66 5 111111111111111111111111111111111 1 666666 5 5 7 00000000 77 5 2222 1 77 55555555555555555 6 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 7777 1 5 88 8 000000 0 8 8 8 11 5 1 888888888 5555555555555555 0 1 2 0 7 6 6 1 3 1 6 6 0000000 3 5 3 3 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8 777 1111111111 66 0 7 3 44 4 0 5 0 3 222 4 0 5 3333333333 1 5 8 5 666666 4444444 0 5 3 333 5 888 4 0 99999999999999999999999999999999999 111 0 0 33 777 5 55 3 5 1 66 0 4 7 8 66 11111 4 3 4 1 66 777777 9999 11111111111 0 0 88888 4 4 8 3 88 55 2 55 3 3 555 0 333 2 5555 444 999 2 2 44 2 33 2 2 0 2 3 6666 3 3 0 555555555555 3 6 1111111 2 2 5 5 2 777777 2 8888 5 2 2 5 2 555 6666 33 33 5 33 1 66 2 33 7777 2 2
lowQualScore : . . ... .... .. . . . .. . . ........ . ...... .... ... . .... ... ....... . .. .. . .. . ................................. . ...... . . . ........ .. . .... . .. ................. . ...................................................................................................................................................... . .... . . .. . ...... . . . . .. . . ......... ................ . . . . . . . . . . . . ....... . . . . .................................................................................... . ... .......... .. . . . .. . . . . . ... . . . .......... . . . . ...... ....... . . . ... . ... . . ................................... ... . . .. ... . .. . . . .. . . . . .. ..... . . . . .. ...... .... ........... . . ..... . . . . .. .. . .. . . ... . ... . .... ... ... . . .. . .. . . . . . .... . . . ............ . . ....... . . . . . ...... . .... . . . . . ... .... .. .. . .. . .. . .. .... . .
lowQualScore : 0 0 555 2222 22 5 8 2 88 2 0 88888888 5 444444 0000 555 0 3333 999 4444444 0 66 99 0 99 0 222222222222222222222222222222222 4 444444 7 7 8 77777777 99 7 1111 9 99 88888888888888888 7 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 8 0000 4 7 66 4 888888 6 0 0 0 00 8 4 444444444 2222222222222222 4 0 2 6 3 7 7 5 3 0 7 7 0000000 2 0 2 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 444 2222222222 33 1 4 4 11 2 1 0 0 3 888 3 4 0 1111111111 7 7 4 7 444444 8888888 0 0 2 888 0 888 0 9 66666666666666666666666666666666666 444 0 9 11 222 0 22 4 0 1 66 7 4 9 9 11 33333 4 3 4 9 11 222222 4444 44444444444 1 1 66666 4 4 9 3 66 00 4 00 6 6 888 7 666 9 7777 777 222 7 7 99 9 99 7 7 3 7 1 5555 1 1 2 888888888888 1 2 3333333 9 9 3 3 7 777777 1 3333 3 5 5 3 9 000 1111 99 99 7 99 6 44 9 99 4444 9 9
consensus : TATTCGACATGCATGNANATGTACA-GTATATACAG-TGCAT-TGGCGAATTCTGAGANAAAGA-A-GGGAGAANGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCCC--TTTCTCTGGGACACCTA---TGTAGTTTTTTT-AAAAACATGTTCAAAAG--GTCTT-TG--C-T--------------AT-TA--A--AA---A---TTAAC-TA------GCACTGAATG-GTG-ATGGGTTTTCTTTC--------TGTACTAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT--TTTACCTG-AA------CT-T--T--------------T---------T-AC--AAGACT------TAC-------GA-------GTACAT---GTAT-------------TTT---------C-------------A-TGC------------T---TTTTCAAAAATAAAAATG----AATAATCAGTAT-TT-TTCATTAAATTCATATTCATAAACGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCAA-TTA-----GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCNAATACAACCTGCTTCGAAAGTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTTATAACTT-TT-ACAG-TTCCGCATAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TTT-AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAN-----GCGAA------------AACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGTCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTG-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTCGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AN-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
Reference ( family-2210 ) : TATTCGACATGCATGNANATGTACA-GTATATACAG-TGCAT-TGGCGAATTCCGAGANAAAGA-A-GGGAGAANGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCC---TTTCTCTGGGACACCTA---TGTAGTTTTTTT-AAAAACATGTTCAAAAG--GTCTT-TG--C-T--------------AT-TA--A--AA---A---TTAAC-TA------GCACTGAATG-GTG-ATGGGTTTTCTTTC--------TGTACTAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT--TTTACCTG-AA------CT-T--T--------------T---------T-AC--AAGACT------TAC-------GA-------GTACAT---GTAT-------------TTT---------T-------------A-TG-------------T---TTTTCAAAAATAAAAATG----AATAATCAGTAT-TT-TTCATTAAATTCATATTCATAAACGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCAA-TTA-----GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCNAATACAACCTGCTTCGAAAGTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTTATAACTT-TT-ACAG-TTCCGCATAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TTT-AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAN-----GCGAA------------AACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGTCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTG-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTCGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AN-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
gi|1 : TATTCGATATGCATGGAAATGTA----TATATA----TGCAT-TGGCGAAT---GAAATAAAAA-A------AAAGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCA---TTTCTCTGGGACACCTAGTATGTAGTTTTTTTTAAAAAGATGTTCAAATA--GTCTT-TG--C-T--------------AT-TC--A--AA---A---TTAAC-TA------GCACTGAATG-GTG-ATGGATTTTCTTTC--------TGTATAAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT--TTTACCTG-A-------CT-T--T--------------T---------T-AC--AAGACT------TAC-------GA-------GTACAT---ATAT---------------------------------------A-T--------------------TTCAAAAATAAAAATC----AATAATCAATAT-TT-TTCATTAAATTCATAT--------GAGCCAAGA-TATTGTTCATATTT-GCAT--CAA-GGCAAATTA-----GATTAAGAAA---T-TA---------CCCCACCCCCCAATA-AACCTGCT-CGAA-GTGT-G-CCC-AAG-C-GAGGAAAGGA-AAG-TTTTTTT-CGGGGGGGGGGGGGGGGGGTCCCGTCT-ATTGTTATTTAG-TACATT-TAAGTAT-------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGGTTTGAACG-AAACGTATATTGATGGTTATAACTT-TTTACAG-TTCCGCATAATATATTTTCCATATTTA-GT-G-CTACGTA-TAGATCTATAAACCGAATGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TT--AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAG-----GTGAA------------AACTATAT-ATTGCTTC-ATTAAAAA-GGTCATGAAA--TAATGT-CACATT-CTTTGTAAGC-GGG-AAAGCACGCACGAGGTCAGTTTA-ATGTTGCCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTA-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGC-AAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-ATTGAAAAAC---AA---AGG-AGA-CT-AAAT-AAAACTAA-TC-T-GAAA-AC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTAG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
gi|10 : --AG-CATAT-----T----TCA-----GTGAA------------AAC---AT-ATTGCTTCCATTAAAAAAGGTCATGAAA--ATATGT-CAAGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCAGTTTA-ATGTTG-CTTTTGTGTTTAGA-C--C-C-CGCCAC-TTAT-T-TAT--TATTA------TT----CATGAAAGAGCAA-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TTAAAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG--GA-CT-AA-T-AAAACTAA-TC-T-G-AA-CC-A----TT----------TGTC------------T-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CA
gi|11 : --AG-CATAT-----T----TCA-----GTGAA------------AAC---AT-ATTGCTTCCATTAAAAAAGGTCATGAAA--ATATGT-CAAGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCAGTTTA-ATGTTG-CTTTTGTGTTTAGA-C--C-C-CGCCAC-TTAT-T-TAT--TATTA------TT----CATGAAAGAGCAA-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TTAAAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG--GA-CT-AA-T-AAAACTAA-TC-T-G-AA-CC-A----TT----------TGTC------------T-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CAct
gi|13 : CATTAAT--TGATGT-CACGTG-CTTTATAAAC-AGAGAAAGTA-G---GATATCTCTTCATATGTTGTCCTTTGTTTCTAGA-C--CTG-T-CCAT-ATTGTT-TAC--CATTA------TT----CATGAAGGAA--------TTG--GA--------TGC----TAA-AG-AATTT-AAA--AATCAG--CCT--ACTTTTC-GGCATTCCATCTTG------------AC---AA---AG---AA-CT-AT-C-AAAACTAT-TCAT-AAAA-Cct
gi|14 : gaaaataaaatatatgtaatgattctaacgcaatttagaatttccTCCA--AAAATAATTCATGAAA--TAATGT-CATGTG-CTGTATAAAC-GGGGAAAGCACGAAAGAGGTCCATTGA-AGGTTGTCTTCTGTGTTTAGATC--C-G-T-CCAC-TTTGTT-TAT--TATTA------TTCATGCATGAAATAAT-A-C--CATAGCGAAAA---C-TGCTTGATAA-AATGG-TT-AAAT-ACCCAG--TTA--ATTTTTC-GGCATT---TCACGT-T-AC-GAAATAA---AA---AGA-TGA-TT-Aatc
gi|15 : CTGAATG-GTG-TTGTGTTTTCTTTC--------TGAACCATA--CTT-TTATT----CATTAT--ATGCATATTTTTGGTTCATTAT--TTTTCCTGCAA------TT-TAAT--------------TAACGTAAAAT-AA--AAGACA------TATGCGTATAGA-------GTACAC---GTAT-------------TTTACAGCATTGC-------------A-TG-------------TGCGTTTTCAAAGCTAAAAATGAATTAATAATAAGTGT-TTCTTCA-TAAATtagacagttttcag
gi|16 : ACATGTGTATACAG-TGTATATGG---ATTCTGAGAAAAGGA-A-GGG--------------TT-TCTAGGGGTTGGCCCCACCCCCCTCTTTCTCTGGGACATTTA---TGTAGTTTTT------AACATGCTCAAAAG--GTCTT-TG--T-TATAAATCTTTAATGAT-TA--A--AAG--A---TTAAC-TA------GCACTCAATG-GTG-ATGATCTGAGTTTC--------TCTACTAGA--ATT-TTAAA----CATTGC--ATGTGCA-------------aattataccagcccaaaa
gi|17 : ATTT-GT-ACAGATTTC---TGATATAATTTCT---TTCA-GC-GTCTGTATAA-------ATA--CCGAACTTGCTTTTTA--------T-AATT-AA-AGTTTTAAA--CGT-GTTAAG--GTATTTAATAATGC-ATTA-TCACGACG---A--ATTT--AA-t
gi|18 : aagTCTGGGACACCTA----GTA-----TGT-ATATAGATGT-CAAAAGTCGTTTTGTGGGCAT--------------ATGTA--ACGAA---AGATTTAAC-TACATGTAGCACTGGATGTGTG-ATGG--TTTCTTTCATCTCTCCTGTACTAAAAACTTATTATGAGATCA--GCTTATGTACA-------------AT--TCTACCTG-AAAAATACCT-T--TCA------------T---------TGACTTCAGACT------TAC----------------GTACAattagcattaaaaaaacccgatcacatacattatatgtattcagtgaaaaccatgcatactagtttccatttgataaaaaa
gi|19 : tA-G-AT-GAAAGACTCTAAGTGAGG-AGT-CT-AT-T-AAAACTAA-TC-TGGAGA-AC-A----CTGTCT-GTTGGTGTC------------TAA-AGTAT------TCT-AAT-ATTA-ACTTTCG-TG-CTTGACAACTA---A-TA-AGTATGC-TTTT---ACCGA----GAACGGCTG--AAAAG-GGGCCAG--AC-CAATG-G-TTGTT--TT---AATCT-CAaactata
gi|2 : tatttgttgtga--GTCTT-TG--C-T-----------------TAGCA--AA---A---TTAAC-TA------GCACTGAATG-GTG-ATGGATTTTCTTTC--------TGAAATAAA--CTT-TTACG----CATTGC--ATGTACA-------------GGA-TTTACCTG-AA------CTAT--T--------------T---------T-AC--AAGACT------TAC-------GA-------GTACAT---ATAT---------------------------------------A-T--------------------TTCAAAAATAAAAATC----AATAATCAATAT-TT---CATTA--TTC-TAT------ATGAGCCAAGA-TATTGT-CATATTTTGCAT--CAA-GACAA-T-A-----GATTAAGAAA---T-TA-------ACCCCCCCCCCCCAATA-AACCTGCT-CGAA-GTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGAGGGTCCCGTCTTATTATTATTTAG-TACATTAT--GTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----ATCAGAGTTTGAACG-AAACGTATATTAATGGT-ATAACTTATT-ACAG-TTC-GCATA-TATATTTTCCATATTTGTGT-GGCTACGTA-TAGATCTATAACC-GAGTGTGCTTTTAT--------T-AA-TAAATAGTTGTAAAAGCGT-TTT-AG--ATATT------TGC-AATG-TCACTACG---AATAAAT--AA-CATGTATATTT----CAG-----TTGAA------------AACTATAT-ATTGCTCTTATTAAAA--GGTCATGAA---TAATGTTCACGTT-CTTTGTAATC-GGGAGAAGCA-GCACGAGGTCAGTTTA-ATGTTGCCTTTTGTG---ATA-C--C-G-C-CCAC-TTTA-T-T-T--TATT-------TT----CATGAA-GAGC-AAC--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAAGAATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-G-AAAAC---AA---AGA-GAA-CTAAA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGT--------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGCTTTTT---ATTAG----CAACGG--G--AAAAG-GGGCTAA--CCACAATGTG-TTGTT--T----AA-CT-CATat
gi|20 : aAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAACGG--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATC
gi|21 : AG--ATTCAG--CAA--ATTGTT--GGCATT---TCTTGAGG-AT-GAAAAAC---AA---AGG-AGA-CT-AA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTTGTTA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAAC-G--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATCctt
gi|22 : cTCAGTGTTTGAACG-AAACATATGTTGATGATTAct
gi|23 : tgtgacctatattgtatattatatattatacT---TCTCGA-------AAAAAT---AA---TCG-GAA-CT-AT-T-TAAAGTA--TC-T-AAAA-ATGA----TGGTCT-A-TAGCGTG------------T-A-CATA-------TAA-AAT-TTTA-ACTTTTG-TT-C------AGT----A--G-A-TATGC-TTTG---GTTGA----CCACGG--A--AAAAC-GGA-TAGAATC-CAATC-G-TTATT--TC---AC-TT-CATCacggatttctgtatttatttgagaaaacccccacaaacctattagattaagaaataaaatttgtaccgatttctggtttttttggggtttttttccagtagt
gi|24 : C---AA---AGG-AGA-CT-TC-T-GAACCTAT-TC-A-GTAA-CC-A----TTGTCTTG-TAGTGCC------------A-A-AGTACAATGTATAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-T-TGC-TTGT---ATTGG----CAACGG--G--AAAAG-GGGTCAG--CTACAACA-T-ATGTT--TT---AA-CT-CATCct
gi|25 : GGAAATCACGCACGAGGTCCATTTA--------------TATTTAGA-C--CCG-C-CCAT-TTTG-TTTATTATACTGC-----TT----TATAAA--------C--TATATTTAAAA---TATACCTC-----------TC-AAA--ATTCAG--T-----TTTTTC-CACATT---TCTCGA-G-AC-GAAAAA-------------------------AAAACTAA-TC-T-GAAA-ctt
gi|27 : GAGGTGGTTCAGGGGTTGG----ATCCCC---TTTCTTTGGAACAC-------------TTTTT-AAA---ATG------AG----CTT-TG--C-T--------------AT-TA--A--AAAG-A---GTAACTTA------GCACTGAATG-GTG-ATG
gi|28 : tcatggattttcaggtaaaggtattcgaaaatttcATTAGGATTTCAACG-AAACGTATGCTGACGG---TAA-------AGGA-TTCAGCAT-ATAT--TATCCGT-CTAA-GT-G-C-ATGTAat
gi|29 : ataATTAGGGTTTGAACA-AAACATATGCTGATGATTA----------ATAG-TTCTACTTAATGTctaagtattcaaatagcagtaagctttatactgatttctaatttcattttt
gi|3 : tatgctgggcacttgtgacatatattttgtacataataatataTATTCGACATGCATGTACATGTACA-GTATATATA--TGCAT-TGGCGAATTCCGAGAGAGAGAGA-GAGAGAAGGGGGGGGGGTG-TCCAGGGGTTGG----ATCCCCT--TTTCCCTGGGTCACCTA---TGTAG--TTTTT-AACAACATTTTCAAAAG--GTCTT-TG--C-T--------------AT-AA--A--AG---A---TTAAC-TA------GCACTGAATG-GTACCCGGGTATTCTTTT--------TGTACT-AA--CTT-TTACA----CATAAC--ATGAACA-------------ATTATTTACTTG-A--------T-T--T---------------------------C--AAAACT------TAC-------GA-------GTACATATAGTATACATGTACATGCATTT---------TCGCTGCATTGCACA-TGC------------T---TTTTCAAAAATAAAAATG----AATAATCAGTATCTT-TTC-----ATTCATATttgaagtactatt
gi|30 : ggctatgtgccgcggcccgtagtatattttttcccgtttcatgctagaatttacatggttcaattcatcatttgtacttttatgatttcaatgctacatggtgcattcattcactacagtctgagtttcagcttggggtttcctcattaactgaaattctcataggcatttggccccgtccacactatcatattatattcgagagaaggtacggttaaataatccaggctgtgtttgtatattattgaaaacttttaaattttgcacagcaatagccgtacgttacagtgtacatcgctgatattttacaatataaatcggaaagaatttcactagaacctctccattattgaactccataacctacctgaaataaaaggttaaatcacgtgatcctattgcattgtccgctgtttttgtaacataaactcgacttcaccatcatgaattttaattaagagtcATCTATAACC-GATTGTGCTTTTGATACACATGT-AACTAAA-A-TTGTAAA--CGTGTTC-AG--GTGCT------AGC-AGTG-TCGCTACGA--A-TTTAT--AA-CATGT-----
gi|31 : t-AT-GAAAATG---GA---AGGCAGA-C--AA-T-AAA-CTAT-TC-G-AGAA-TC-A----TTGTCT-G-TGGTGTT----------------ATTA-------TATCAAT-TTTA-ACTTTTG-TA-C------A-T----A-TA-A-T-Ta
gi|32 : atTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATCag
gi|33 : acTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATCct
gi|34 : acA-ACTTTTG-TA-C------AATTGATA-TG-A-T-TAC-TTTTCTTATTGA----CAACAG--G--AAAAG-GGGCCAG--CTCCATCA-G-TCGTT--TT---AA-AT-CAct
gi|35 : AGTGC-GGCCCCAAGGCTGAGAAAAGGACAGG-TTTTTTTTacct
gi|36 : -A-T-TGC-TTTC---ATTGG----CAACTG--G--AAAAG-GGACAAG--CTTCAATA-G-TTCTT--TG---AG-TT-CATCtattttgtgagcataatccaattgtgacatatatat
gi|37 : tacaatAAATTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-CGTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-ctt
gi|4 : CTTTC--------TGTACTAAA--CTT-TTACG----CATACC--ACGTAC--------------AT--TCTACCTG-AA------AT-T--TATAAGCCTAAAAGAT---------T-TC--AAGACTTGGCAATACATA----GATGCACATGTACAT---GTAT-------------TTT---------C-------------ACTGCATCGCAAGTGCTT---TTTTCAAAAAT-AAAATG----AATAATCGATGTCTT-TTCG-TA----CATGATTAT--ACAAGCCCAGATTTTTGT-CATATTT-TGATTACGAAAATAATTTAAAAATGATTTAAAAACTGTCTANNNNNNNNNNNNNNNNNNNNNNNNNAACCTG--TCTAAAATGTGG-CCCCGAGCCCGAAAAAATGA-ACGATTTTTTTT
gi|4 : ATCAGGGTTTGAACG-AAACGTATGC--AAAGTTA----------ACAG-TTCCGC---ATATAATTTCCGTATTTA-GT-atttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataatcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|40 : ctttctgtactaaacttttacgcataccacgtacattctacctgaaatttataagcctaaaagatttcaagacttggcaatacatagatgcacatgtacatgtattttcactgcatcgcaagtgcttttttcaaaaataaaatgaataatcgatgtcttttcgtacatgattatacaagcccagatttttgtcatattttgattacgaaaataatttaaaaatgatttaaaaactgtctannnnnnnnnnnnnnnnnnnnnnnnnaacctgtctaaaatgtggccccgagcccgaaaaaatgaacgattttttttatttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataGTTTTGTT-AAAAATATGTTCAAATG--ATCTT-TG--C-T--------------AT-TA--A--AAAATA---TTAACTTA------GCACTGtgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|44 : CATCTA---CGTAGTTTTT------AACGTGTTCAAAAA--GTTTT-TG--T-T--------------A
gi|5 : AATCAGTAT-TG-TTCATTAAATTCATATTCATAAACGAGCCA-GA-TATTGT-CATATTT-GCAT--CAATGGCTA-TT------GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCAAATACAACCTGCTTCGAAAGTGT-G-CCGCCAG-CCGAGGAAAGGA-AAG-TTTTTTTTC-------GGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACGTAT--TGATGGTTATAACTTATT-ACAG--TCCGCATAATAATATTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAA--------TAAACTAAA-AGTTGTAAAAGCGT-TTT-AAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT-----TA---CAC-----TCGTA------------CACTA-ATAATTGCTTTTATTA
gi|6 : AATCAGTAT-TG-TTCATTAAATTCATATTCATAAACGAGCCA-GA-TATTGT-CATATTT-GCAT--CAATGGCTA-TT------GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCAAATACAACCTGCTTCGAAAGTGT-G-CCGCCAG-CCGAGGAAAGGA-AAG-TTTTTTTTC-------GGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACGTAT--TGATGGTTATAACTTATT-ACAG--TCCGCATAATAATATTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAA--------TAAACTAAA-AGTTGTAAAAGCGT-TTT-AAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT-----TA---CAC-----TCGTA------------CACTA-ATAATTGCTTTTATTA
gi|7 : TCAGGGTTTGAACG-AAACGTATGC--AAAGTTA----------ACAG-TTCCGC---ATATAATTTCCGTATTTA-GT-
gi|7 : CCGAATGTGCTTTTGA--------T-AATTAAA-AGCTGTATACGTGT-TT--AA--ATATT----------AA-A-TTA--ACA---G-TATATGCAA-CATAT-----TTATTCAT-----GTGGA------------AATCATGC-ATTGCTTCCATTAAAAAAAGTCATGGAA--TAATGT-CCCGTA-CTTTGTAA-C-TGGGAAAGCTCGCAAGAGGTCCATTGA-ATGCTGTCCTTTG-GTTTAGACC--C-GCC-CCAA-TTTGTT-TAT--TATTA------TT----CAT------------------GCAAAAA---C-TGCTTGATAA-AG-GG-TTCAAT--ATTCAA--TTA--ATTTTTC-GGCCTT---TCTCGA-G-AA-GAAAAAC---AG---AG---GA-CT-AT-G-AAAACTCT-TC-A-GAAA-CC-A----TTGCCT-G-TGGTGAC------------T-A-AGTA-------TAtgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtccgaatgtgcttttgataattaaaagctgtatacgtgtttaaatattaaattaacagtatatgcaacatatttattcatgtggaaatcatgcattgcttccattaaaaaaagtcatggaataatgtcccgtactttgtaactgggaaagctcgcaagaggtccattgaatgctgtcctttggtttagacccgccccaatttgtttattattattcatgcaaaaactgcttgataaagggttcaatattcaattaatttttcggcctttctcgagaagaaaaacagaggactatgaaaactcttcagaaaccattgcctgtggtgactaagtata
gi|8 : tcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtGTATA-GTATGTACAGCTACAT--GGCGGAATCT----CAAAGA-ACAGGAAAATGGGGGG---------AGGGGTTGG----ATC
gi|9 : taggtctgagtttagcttggtgttcctcagaaattggagatcctataggcatttggtcccgcccaatatatgatacaatctagaaacgtgtgtctcgacagaaggttatgggtttaaataattagagcatttttatatataattgaaaacttccattttcgtatagagaaaccgtacatattcataatccaataagaaaatatcagcaaaatgtcagtaaacctctctattaatggaaacctgtttttgtactcattgacctatctgaataagcttggtgttaggcaaaagtatatcaacgtgatacgaagcacttgtccatcttttagacatgattacgctttcagacgtcacagactttaagacaagtgtatttggagtaatgttggctgaATT------TGC-AATGGTCACTACGGACA-TAAAT--AAGCATGT-----G----TATATGCAGCAAATATTATCAGGTTAACTATGT-ATTTGTTCCATATAAGAAGGTCATGAAAAATAAAGT-CACGTTTCTTTGTAAGCCGGGGAAAGCACGCACGAGGT-------------GT---TTGTGTTTAGA-CGCC-G-C-CCACAGTTG-T-T----TATTAAAATATTT----CATGAAAGAAC-A-GAGCCTGGCGAAAAACCT-TGCTTGATAATAG-GGCTT-AAG--ATTCAGAACAAGAATT--TCAGGCATT---TCTTGA-GAAC-GAAAAA----AA---AGG-AGACCT-AC-TGAAAATTAATTC-T-GAAATCC-GCACTCTGTCT-G-T-ATGTCCGCTTCTGATGTT-A-A-TC-------TAT-ACTATATA-ACTTTCGATAGC------ACT----A-TAGA-T-AGC--TTT---ATTGGATAATAGCGA--GATAAAAG-GGGCCAG--CTACTATA-GTTTGTTGATCCATAA-CTACATC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTTGTTAATTGATGACAAACATAATCTTTCATGAAGAATTATCAATCCTTGATGTTTATAATCAAATTCTATTAAAAAATAACAAATCTAAACCTGCCCGAAGCTAGTGTAATCCAAAGCGCGAGAATATATACTTTATTTTTGTGAGCACAATCCATTTGTGACATGTTTAATACATTTATAGTATCTCGGTTTGAACCAAACGTGCATATAATTTCGGTATTTAATTGAATACACTCTATTTGATTAAATTTAAAAATTGTACTGATTTTTTTTTCCAG
Unaligned ( gi|26 ): GCATATGCAGCATTTACATTCAGTGAATATCACACATTTATTTCTCCATTCATAGAAAAAGAAATAATGATAATGGCACGTGCTTTGACAACAAGGAAAACATCAAACCAATTCATATCCGAAATTGAATGTTGTCCT
Unaligned ( gi|38 ): CCCCCCCCCCCCCCCGGTTACGGCCTTGTATGCTATACATATGTTATGCGAAAGGGAAGGGGG
Unaligned ( gi|39 ): TATGTCTCTGCTGTAATCAACTAGCGTAAGGGTGACTGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|41 ): TGCTGTAATCAATAGCGTAAGGGTGACTGGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|42 ): CTATGGGTGTATATGTATATATTATGGGTATAGAAGATTCGGTTTT
Unaligned ( gi|43 ): ATACTTTTCATAGGATATTTTAATATTTTGTGCCAGGTACAT
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222 11 22222222 111111 1111 2222 1111 111111 22222222222222 1111111111 111111 22222222 1111 44444444444444444 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1111 1 333333 1 11 1 333333333 3333333333333333 1 1 1 3333333 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4444444444 1 1 111 2222222222 111111 1111111 1 111 33333333333333333333333333333333333 111 1 11111 1 111111 22222222222 1 111111111111 1111111
lowQualScore : 1 1 333 2222 33 2 0 3 33 0 1 99999999 4 222222 7777 3333 1 7777 666 222222 3 11 66 5 66 5 99999999999999 5 77 77 9999999999 5 5 666666 5 5 7 00000000 77 5 2222 1 77 33333333333333333 6 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 7777 1 5 88 8 000000 0 8 8 8 11 5 1 888888888 5555555555555555 0 1 2 0 7 6 6 1 3 1 6 6 0000000 3 5 3 3 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8 777 1111111111 66 0 7 3 44 4 0 5 0 3 222 4 0 5 3333333333 1 5 8 5 666666 4444444 0 5 3 333 5 888 4 0 99999999999999999999999999999999999 111 0 0 33 777 5 55 3 5 1 66 0 4 7 8 66 11111 4 3 4 1 66 777777 9999 11111111111 0 0 88888 4 4 8 3 88 55 2 55 3 3 555 0 333 2 5555 444 999 2 2 44 2 33 2 2 0 2 3 6666 3 3 0 555555555555 3 6 1111111 2 2 5 5 2 777777 2 8888 5 2 2 5 2 555 6666 33 33 5 33 1 66 2 33 7777 2 2
lowQualScore : . . ... .... .. . . . .. . . ........ . ...... .... .... . .... ... ...... . .. .. . .. . .............. . .. .. .......... . . ...... . . . ........ .. . .... . .. ................. . ...................................................................................................................................................... . .... . . .. . ...... . . . . .. . . ......... ................ . . . . . . . . . . . . ....... . . . . .................................................................................... . ... .......... .. . . . .. . . . . . ... . . . .......... . . . . ...... ....... . . . ... . ... . . ................................... ... . . .. ... . .. . . . .. . . . . .. ..... . . . . .. ...... .... ........... . . ..... . . . . .. .. . .. . . ... . ... . .... ... ... . . .. . .. . . . . . .... . . . ............ . . ....... . . . . . ...... . .... . . . . . ... .... .. .. . .. . .. . .. .... . .
lowQualScore : 0 0 555 2222 22 5 8 2 22 2 0 88888888 5 444444 0000 8888 0 3333 999 777777 0 66 99 0 99 0 44444444444444 7 99 99 0000000000 7 7 444444 7 7 8 77777777 99 7 1111 9 99 99999999999999999 7 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8 0000 4 7 66 4 888888 6 0 0 0 00 8 4 444444444 2222222222222222 4 0 2 6 3 7 7 5 3 0 7 7 0000000 2 0 2 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 444 2222222222 33 1 4 4 11 2 1 0 0 3 888 3 4 0 1111111111 7 7 4 7 444444 8888888 0 0 2 888 0 888 0 9 66666666666666666666666666666666666 444 0 9 11 222 0 22 4 0 1 66 7 4 9 9 11 33333 4 3 4 9 11 222222 4444 44444444444 1 1 66666 4 4 9 3 66 00 4 00 6 6 888 7 666 9 7777 777 222 7 7 99 9 99 7 7 3 7 1 5555 1 1 2 888888888888 1 2 3333333 9 9 3 3 7 777777 1 3333 3 5 5 3 9 000 1111 99 99 7 99 6 44 9 99 4444 9 9
consensus : TATTCGACATGCATGNANATGTACA-GTATATACAG-TGCAT-TGGCGAATTCTGAGANAAAGA-A-GGGAGAANGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCCCT--TTCTCTGGGACACCTA---TGTAGTTTTTTT-AAAAACATGTTCAAAAG--GTCTT-TG--C-T--------------AT-TA--A--AA---A---T--TAAC-T-A------GCACTGAATG-GTG-ATGGGTTTTCTTTC--------TGTACTAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT--TTTACCTG-AA------CT-T--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATGTATTTT-C------------A----------TGC------------TTTTTCAAAAATAAAAATG----AATAATCAGTAT-TT-TTCATTAAATTCATATTCATAAACGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCAA-TTA-----GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCNAATACAACCTGCTTCGAAAGTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTTATAACTT-TT-ACAG-TTCCGCATAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TTT-AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAN-----GCGAA------------AACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGTCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTG-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTCGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AN-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
Reference ( family-2210 ) : TATTCGACATGCATGNANATGTACA-GTATATACAG-TGCAT-TGGCGAATTCTGAGANAAAGA-A-GGGAGAANGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCCCT--TTCTCTGGGACACCTA---TGTAGTTTTTTT-AAAAACATGTTCAAAAG--GTCTT-TG--C-T--------------AT-TA--A--AA---A---T--TAAC-T-A------GCACTGAATG-GTG-ATGGGTTTTCTTTC--------TGTACTAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT--TTTACCTG-AA------CT-T--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATGTATTTT-C------------A----------TGC------------TTTTTCAAAAATAAAAATG----AATAATCAGTAT-TT-TTCATTAAATTCATATTCATAAACGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCAA-TTA-----GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCNAATACAACCTGCTTCGAAAGTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTTATAACTT-TT-ACAG-TTCCGCATAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TTT-AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAN-----GCGAA------------AACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGTCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTG-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTCGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AN-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
gi|1 : TATTCGATATGCATGGAAATGTA----TATATA----TGCAT-TGGCGAAT---GAAATAAAAA-A------AAAGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCA-T--TTCTCTGGGACACCTAGTATGTAGTTTTTTTTAAAAAGATGTTCAAATA--GTCTT-TG--C-T--------------AT-TC--A--AA---A---T--TAAC-T-A------GCACTGAATG-GTG-ATGGATTTTCTTTC--------TGTATAAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT--TTTACCTG-A-------CT-T--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATATAT-----------------A----------T-----------------TTCAAAAATAAAAATC----AATAATCAATAT-TT-TTCATTAAATTCATAT--------GAGCCAAGA-TATTGTTCATATTT-GCAT--CAA-GGCAAATTA-----GATTAAGAAA---T-TA---------CCCCACCCCCCAATA-AACCTGCT-CGAA-GTGT-G-CCC-AAG-C-GAGGAAAGGA-AAG-TTTTTTT-CGGGGGGGGGGGGGGGGGGTCCCGTCT-ATTGTTATTTAG-TACATT-TAAGTAT-------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGGTTTGAACG-AAACGTATATTGATGGTTATAACTT-TTTACAG-TTCCGCATAATATATTTTCCATATTTA-GT-G-CTACGTA-TAGATCTATAAACCGAATGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TT--AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAG-----GTGAA------------AACTATAT-ATTGCTTC-ATTAAAAA-GGTCATGAAA--TAATGT-CACATT-CTTTGTAAGC-GGG-AAAGCACGCACGAGGTCAGTTTA-ATGTTGCCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTA-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGC-AAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-ATTGAAAAAC---AA---AGG-AGA-CT-AAAT-AAAACTAA-TC-T-GAAA-AC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTAG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
gi|10 : --AG-CATAT-----T----TCA-----GTGAA------------AAC---AT-ATTGCTTCCATTAAAAAAGGTCATGAAA--ATATGT-CAAGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCAGTTTA-ATGTTG-CTTTTGTGTTTAGA-C--C-C-CGCCAC-TTAT-T-TAT--TATTA------TT----CATGAAAGAGCAA-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TTAAAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG--GA-CT-AA-T-AAAACTAA-TC-T-G-AA-CC-A----TT----------TGTC------------T-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CA
gi|11 : --AG-CATAT-----T----TCA-----GTGAA------------AAC---AT-ATTGCTTCCATTAAAAAAGGTCATGAAA--ATATGT-CAAGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCAGTTTA-ATGTTG-CTTTTGTGTTTAGA-C--C-C-CGCCAC-TTAT-T-TAT--TATTA------TT----CATGAAAGAGCAA-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TTAAAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG--GA-CT-AA-T-AAAACTAA-TC-T-G-AA-CC-A----TT----------TGTC------------T-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CAct
gi|13 : CATTAAT--TGATGT-CACGTG-CTTTATAAAC-AGAGAAAGTA-G---GATATCTCTTCATATGTTGTCCTTTGTTTCTAGA-C--CTG-T-CCAT-ATTGTT-TAC--CATTA------TT----CATGAAGGAA--------TTG--GA--------TGC----TAA-AG-AATTT-AAA--AATCAG--CCT--ACTTTTC-GGCATTCCATCTTG------------AC---AA---AG---AA-CT-AT-C-AAAACTAT-TCAT-AAAA-Cct
gi|14 : gaaaataaaatatatgtaatgattctaacgcaatttagaatttccTCCA--AAAATAATTCATGAAA--TAATGT-CATGTG-CTGTATAAAC-GGGGAAAGCACGAAAGAGGTCCATTGA-AGGTTGTCTTCTGTGTTTAGATC--C-G-T-CCAC-TTTGTT-TAT--TATTA------TTCATGCATGAAATAAT-A-C--CATAGCGAAAA---C-TGCTTGATAA-AATGG-TT-AAAT-ACCCAG--TTA--ATTTTTC-GGCATT---TCACGT-T-AC-GAAATAA---AA---AGA-TGA-TT-Aatc
gi|15 : CTGAATG-GTG-TTGTGTTTTCTTTC--------TGAACCATA--CTT-TTATT----CATTAT--ATGCATATTTTTGGTTCATTAT--TTTTCCTGCAA------TT-TAAT--TAACGTAAAAT-A--------------A--AAGACAT------ATGCGTATAGA-------GTA-----------------CACGTATTTTAC------------AGCATTGCATGTGC------------GTTTTCAAAGCTAAAAATGAATTAATAATAAGTGT-TTCTTCA-TAAATtagacagttttcag
gi|16 : ACATGTGTATACAG-TGTATATGG---ATTCTGAGAAAAGGA-A-GGG--------------TT-TCTAGGGGTTGGCCCCACCCCCCTCTTTCTCTGGGACATTTA---TGTAGTTTTT------AACATGCTCAAAAG--GTCTT-TG--T-TATAAATCTTTAATGAT-TA--A--AAG--A---T--TAAC-T-A------GCACTCAATG-GTG-ATGATCTGAGTTTC--------TCTACTAGA--ATT-TTAAA----CATTGC--ATGTGCA-------------aattataccagcccaaaa
gi|17 : ATTT-GT-ACAGATTTC---TGATATAATTTCT---TTCA-GC-GTCTGTATAA-------ATA--CCGAACTTGCTTTTTA--------T-AATT-AA-AGTTTTAAA--CGT-GTTAAG--GTATTTAATAATGC-ATTA-TCACGACG---A--ATTT--AA-t
gi|18 : aagTCTGGGACACCTA----GTA-----TGT-ATATAGATGT-CAAAAGTCGTTTTGTGGGCAT--------------ATGTA--ACGAA---AGATT--TAAC-T-ACATGTAGCACTGGATGTGTG-ATGG--TTTCTTTCATCTCTCCTGTACTAAAAACTTATTATGAGATCA--GCTTATGTACA-------------AT--TCTACCTG-AAAAATACCT-T--TCAT---------TGA--------------CTTCAGACTT------AC----------------GTA-----------------CAattagcattaaaaaaacccgatcacatacattatatgtattcagtgaaaaccatgcatactagtttccatttgataaaaaa
gi|19 : tA-G-AT-GAAAGACTCTAAGTGAGG-AGT-CT-AT-T-AAAACTAA-TC-TGGAGA-AC-A----CTGTCT-GTTGGTGTC------------TAA-AGTAT------TCT-AAT-ATTA-ACTTTCG-TG-CTTGACAACTA---A-TA-AGTATGC-TTTT---ACCGA----GAACGGCTG--AAAAG-GGGCCAG--AC-CAATG-G-TTGTT--TT---AATCT-CAaactata
gi|2 : tatttgttgtga--GTCTT-TG--C-T-----------------TAGCA--AA---A---T--TAAC-T-A------GCACTGAATG-GTG-ATGGATTTTCTTTC--------TGAAATAAA--CTT-TTACG----CATTGC--ATGTACA-------------GGA-TTTACCTG-AA------CTAT--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATATAT-----------------A----------T-----------------TTCAAAAATAAAAATC----AATAATCAATAT-TT---CATTA--TTC-TAT------ATGAGCCAAGA-TATTGT-CATATTTTGCAT--CAA-GACAA-T-A-----GATTAAGAAA---T-TA-------ACCCCCCCCCCCCAATA-AACCTGCT-CGAA-GTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGAGGGTCCCGTCTTATTATTATTTAG-TACATTAT--GTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----ATCAGAGTTTGAACG-AAACGTATATTAATGGT-ATAACTTATT-ACAG-TTC-GCATA-TATATTTTCCATATTTGTGT-GGCTACGTA-TAGATCTATAACC-GAGTGTGCTTTTAT--------T-AA-TAAATAGTTGTAAAAGCGT-TTT-AG--ATATT------TGC-AATG-TCACTACG---AATAAAT--AA-CATGTATATTT----CAG-----TTGAA------------AACTATAT-ATTGCTCTTATTAAAA--GGTCATGAA---TAATGTTCACGTT-CTTTGTAATC-GGGAGAAGCA-GCACGAGGTCAGTTTA-ATGTTGCCTTTTGTG---ATA-C--C-G-C-CCAC-TTTA-T-T-T--TATT-------TT----CATGAA-GAGC-AAC--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAAGAATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-G-AAAAC---AA---AGA-GAA-CTAAA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGT--------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGCTTTTT---ATTAG----CAACGG--G--AAAAG-GGGCTAA--CCACAATGTG-TTGTT--T----AA-CT-CATat
gi|20 : aAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAACGG--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATC
gi|21 : AG--ATTCAG--CAA--ATTGTT--GGCATT---TCTTGAGG-AT-GAAAAAC---AA---AGG-AGA-CT-AA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTTGTTA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAAC-G--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATCctt
gi|22 : cTCAGTGTTTGAACG-AAACATATGTTGATGATTAct
gi|23 : tgtgacctatattgtatattatatattatacT---TCTCGA-------AAAAAT---AA---TCG-GAA-CT-AT-T-TAAAGTA--TC-T-AAAA-ATGA----TGGTCT-A-TAGCGTG------------T-A-CATA-------TAA-AAT-TTTA-ACTTTTG-TT-C------AGT----A--G-A-TATGC-TTTG---GTTGA----CCACGG--A--AAAAC-GGA-TAGAATC-CAATC-G-TTATT--TC---AC-TT-CATCacggatttctgtatttatttgagaaaacccccacaaacctattagattaagaaataaaatttgtaccgatttctggtttttttggggtttttttccagtagt
gi|24 : C---AA---AGG-AGA-CT-TC-T-GAACCTAT-TC-A-GTAA-CC-A----TTGTCTTG-TAGTGCC------------A-A-AGTACAATGTATAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-T-TGC-TTGT---ATTGG----CAACGG--G--AAAAG-GGGTCAG--CTACAACA-T-ATGTT--TT---AA-CT-CATCct
gi|25 : GGAAATCACGCACGAGGTCCATTTA--------------TATTTAGA-C--CCG-C-CCAT-TTTG-TTTATTATACTGC-----TT----TATAAA--------C--TATATTTAAAA---TATACCTC-----------TC-AAA--ATTCAG--T-----TTTTTC-CACATT---TCTCGA-G-AC-GAAAAA-------------------------AAAACTAA-TC-T-GAAA-ctt
gi|27 : GAGGTGGTTCAGGGGTTGG----ATCCCC-T--TTCTTTGGAACAC-------------TTTTT-AAAA---TG------AG----CTT-TG--C-T--------------AT-TA--A--AA---A---GAGTAAC-TTA------GCACTGAATG-GTG-ATG
gi|28 : tcatggattttcaggtaaaggtattcgaaaatttcATTAGGATTTCAACG-AAACGTATGCTGACGG---TAA-------AGGA-TTCAGCAT-ATAT--TATCCGT-CTAA-GT-G-C-ATGTAat
gi|29 : ataATTAGGGTTTGAACA-AAACATATGCTGATGATTA----------ATAG-TTCTACTTAATGTctaagtattcaaatagcagtaagctttatactgatttctaatttcattttt
gi|3 : tatgctgggcacttgtgacatatattttgtacataataatataTATTCGACATGCATGTACATGTACA-GTATATATA--TGCAT-TGGCGAATTCCGAGAGAGAGAGA-GAGAGAAGGGGGGGGGGTG-TCCAGGGGTTGG----ATCCCCTT--TTCCCTGGGTCACCTA---TGTAG--TTTTT-AACAACATTTTCAAAAG--GTCTT-TG--C-T--------------AT-AA--A--AG---A---T--TAAC-T-A------GCACTGAATG-GTACCCGGGTATTCTTTT--------TGTACT-AA--CTT-TTACA----CATAAC--ATGAACA-------------ATTATTTACTTG-A--------T-T--T-----------------------------C--AAAACTT------AC-------GA-------GTACATATAGTATACATGTACATGCATTTT-CGCTGCATTGCACA----------TGC------------TTTTTCAAAAATAAAAATG----AATAATCAGTATCTT-TTC-----ATTCATATttgaagtactatt
gi|30 : ggctatgtgccgcggcccgtagtatattttttcccgtttcatgctagaatttacatggttcaattcatcatttgtacttttatgatttcaatgctacatggtgcattcattcactacagtctgagtttcagcttggggtttcctcattaactgaaattctcataggcatttggccccgtccacactatcatattatattcgagagaaggtacggttaaataatccaggctgtgtttgtatattattgaaaacttttaaattttgcacagcaatagccgtacgttacagtgtacatcgctgatattttacaatataaatcggaaagaatttcactagaacctctccattattgaactccataacctacctgaaataaaaggttaaatcacgtgatcctattgcattgtccgctgtttttgtaacataaactcgacttcaccatcatgaattttaattaagagtcATCTATAACC-GATTGTGCTTTTGATACACATGT-AACTAAA-A-TTGTAAA--CGTGTTC-AG--GTGCT------AGC-AGTG-TCGCTACGA--A-TTTAT--AA-CATGT-----
gi|31 : t-AT-GAAAATG---GA---AGGCAGA-C--AA-T-AAA-CTAT-TC-G-AGAA-TC-A----TTGTCT-G-TGGTGTT----------------ATTA-------TATCAAT-TTTA-ACTTTTG-TA-C------A-T----A-TA-A-T-Ta
gi|32 : atTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATCag
gi|33 : acTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATCct
gi|34 : acA-ACTTTTG-TA-C------AATTGATA-TG-A-T-TAC-TTTTCTTATTGA----CAACAG--G--AAAAG-GGGCCAG--CTCCATCA-G-TCGTT--TT---AA-AT-CAct
gi|35 : AGTGC-GGCCCCAAGGCTGAGAAAAGGACAGG-TTTTTTTTacct
gi|36 : -A-T-TGC-TTTC---ATTGG----CAACTG--G--AAAAG-GGACAAG--CTTCAATA-G-TTCTT--TG---AG-TT-CATCtattttgtgagcataatccaattgtgacatatatat
gi|37 : tacaatAAATTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-CGTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-ctt
gi|4 : CTTTC--------TGTACTAAA--CTT-TTACG----CATACC--ACGTACA--------------T--TCTACCTG-AA------AT-T--T--A---------T-AAGCCTAAAAGATTTC--AAGACTTGGCAATACATA----GATGCACATGTA-----------------CATGTATTTT-C------------AC---------TGCATCGCAAGTGCTTTTTTCAAAAAT-AAAATG----AATAATCGATGTCTT-TTCG-TA----CATGATTAT--ACAAGCCCAGATTTTTGT-CATATTT-TGATTACGAAAATAATTTAAAAATGATTTAAAAACTGTCTANNNNNNNNNNNNNNNNNNNNNNNNNAACCTG--TCTAAAATGTGG-CCCCGAGCCCGAAAAAATGA-ACGATTTTTTTT
gi|4 : ATCAGGGTTTGAACG-AAACGTATGC--AAAGTTA----------ACAG-TTCCGC---ATATAATTTCCGTATTTA-GT-atttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataatcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|40 : ctttctgtactaaacttttacgcataccacgtacattctacctgaaatttataagcctaaaagatttcaagacttggcaatacatagatgcacatgtacatgtattttcactgcatcgcaagtgcttttttcaaaaataaaatgaataatcgatgtcttttcgtacatgattatacaagcccagatttttgtcatattttgattacgaaaataatttaaaaatgatttaaaaactgtctannnnnnnnnnnnnnnnnnnnnnnnnaacctgtctaaaatgtggccccgagcccgaaaaaatgaacgattttttttatttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataGTTTTGTT-AAAAATATGTTCAAATG--ATCTT-TG--C-T--------------AT-TA--A--AAAATA---T--TAACTT-A------GCACTGtgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|44 : CATCTA---CGTAGTTTTT------AACGTGTTCAAAAA--GTTTT-TG--T-T--------------A
gi|5 : AATCAGTAT-TG-TTCATTAAATTCATATTCATAAACGAGCCA-GA-TATTGT-CATATTT-GCAT--CAATGGCTA-TT------GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCAAATACAACCTGCTTCGAAAGTGT-G-CCGCCAG-CCGAGGAAAGGA-AAG-TTTTTTTTC-------GGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACGTAT--TGATGGTTATAACTTATT-ACAG--TCCGCATAATAATATTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAA--------TAAACTAAA-AGTTGTAAAAGCGT-TTT-AAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT-----TA---CAC-----TCGTA------------CACTA-ATAATTGCTTTTATTA
gi|6 : AATCAGTAT-TG-TTCATTAAATTCATATTCATAAACGAGCCA-GA-TATTGT-CATATTT-GCAT--CAATGGCTA-TT------GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCAAATACAACCTGCTTCGAAAGTGT-G-CCGCCAG-CCGAGGAAAGGA-AAG-TTTTTTTTC-------GGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACGTAT--TGATGGTTATAACTTATT-ACAG--TCCGCATAATAATATTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAA--------TAAACTAAA-AGTTGTAAAAGCGT-TTT-AAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT-----TA---CAC-----TCGTA------------CACTA-ATAATTGCTTTTATTA
gi|7 : TCAGGGTTTGAACG-AAACGTATGC--AAAGTTA----------ACAG-TTCCGC---ATATAATTTCCGTATTTA-GT-
gi|7 : CCGAATGTGCTTTTGA--------T-AATTAAA-AGCTGTATACGTGT-TT--AA--ATATT----------AA-A-TTA--ACA---G-TATATGCAA-CATAT-----TTATTCAT-----GTGGA------------AATCATGC-ATTGCTTCCATTAAAAAAAGTCATGGAA--TAATGT-CCCGTA-CTTTGTAA-C-TGGGAAAGCTCGCAAGAGGTCCATTGA-ATGCTGTCCTTTG-GTTTAGACC--C-GCC-CCAA-TTTGTT-TAT--TATTA------TT----CAT------------------GCAAAAA---C-TGCTTGATAA-AG-GG-TTCAAT--ATTCAA--TTA--ATTTTTC-GGCCTT---TCTCGA-G-AA-GAAAAAC---AG---AG---GA-CT-AT-G-AAAACTCT-TC-A-GAAA-CC-A----TTGCCT-G-TGGTGAC------------T-A-AGTA-------TAtgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtccgaatgtgcttttgataattaaaagctgtatacgtgtttaaatattaaattaacagtatatgcaacatatttattcatgtggaaatcatgcattgcttccattaaaaaaagtcatggaataatgtcccgtactttgtaactgggaaagctcgcaagaggtccattgaatgctgtcctttggtttagacccgccccaatttgtttattattattcatgcaaaaactgcttgataaagggttcaatattcaattaatttttcggcctttctcgagaagaaaaacagaggactatgaaaactcttcagaaaccattgcctgtggtgactaagtata
gi|8 : tcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtGTATA-GTATGTACAGCTACAT--GGCGGAATCT----CAAAGA-ACAGGAAAATGGGGGG---------AGGGGTTGG----ATC
gi|9 : taggtctgagtttagcttggtgttcctcagaaattggagatcctataggcatttggtcccgcccaatatatgatacaatctagaaacgtgtgtctcgacagaaggttatgggtttaaataattagagcatttttatatataattgaaaacttccattttcgtatagagaaaccgtacatattcataatccaataagaaaatatcagcaaaatgtcagtaaacctctctattaatggaaacctgtttttgtactcattgacctatctgaataagcttggtgttaggcaaaagtatatcaacgtgatacgaagcacttgtccatcttttagacatgattacgctttcagacgtcacagactttaagacaagtgtatttggagtaatgttggctgaATT------TGC-AATGGTCACTACGGACA-TAAAT--AAGCATGT-----G----TATATGCAGCAAATATTATCAGGTTAACTATGT-ATTTGTTCCATATAAGAAGGTCATGAAAAATAAAGT-CACGTTTCTTTGTAAGCCGGGGAAAGCACGCACGAGGT-------------GT---TTGTGTTTAGA-CGCC-G-C-CCACAGTTG-T-T----TATTAAAATATTT----CATGAAAGAAC-A-GAGCCTGGCGAAAAACCT-TGCTTGATAATAG-GGCTT-AAG--ATTCAGAACAAGAATT--TCAGGCATT---TCTTGA-GAAC-GAAAAA----AA---AGG-AGACCT-AC-TGAAAATTAATTC-T-GAAATCC-GCACTCTGTCT-G-T-ATGTCCGCTTCTGATGTT-A-A-TC-------TAT-ACTATATA-ACTTTCGATAGC------ACT----A-TAGA-T-AGC--TTT---ATTGGATAATAGCGA--GATAAAAG-GGGCCAG--CTACTATA-GTTTGTTGATCCATAA-CTACATC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTTGTTAATTGATGACAAACATAATCTTTCATGAAGAATTATCAATCCTTGATGTTTATAATCAAATTCTATTAAAAAATAACAAATCTAAACCTGCCCGAAGCTAGTGTAATCCAAAGCGCGAGAATATATACTTTATTTTTGTGAGCACAATCCATTTGTGACATGTTTAATACATTTATAGTATCTCGGTTTGAACCAAACGTGCATATAATTTCGGTATTTAATTGAATACACTCTATTTGATTAAATTTAAAAATTGTACTGATTTTTTTTTCCAG
Unaligned ( gi|26 ): GCATATGCAGCATTTACATTCAGTGAATATCACACATTTATTTCTCCATTCATAGAAAAAGAAATAATGATAATGGCACGTGCTTTGACAACAAGGAAAACATCAAACCAATTCATATCCGAAATTGAATGTTGTCCT
Unaligned ( gi|38 ): CCCCCCCCCCCCCCCGGTTACGGCCTTGTATGCTATACATATGTTATGCGAAAGGGAAGGGGG
Unaligned ( gi|39 ): TATGTCTCTGCTGTAATCAACTAGCGTAAGGGTGACTGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|41 ): TGCTGTAATCAATAGCGTAAGGGTGACTGGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|42 ): CTATGGGTGTATATGTATATATTATGGGTATAGAAGATTCGGTTTT
Unaligned ( gi|43 ): ATACTTTTCATAGGATATTTTAATATTTTGTGCCAGGTACAT
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222 11 22222222 111111 1111 2222 1111 111111 22222222222222 1111111111 111111 22222222 1111 44444444444444444 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1111 1 333333 1 11 1 333333333 3333333333333333 1 1 1 3333333 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4444444444 1 1 111 2222222222 111111 1111111 1 111 33333333333333333333333333333333333 111 1 11111 1 111111 22222222222 1 111111111111 1111111
lowQualScore : 1 1 333 2222 33 2 0 3 33 0 1 99999999 4 222222 7777 3333 1 7777 666 222222 3 11 66 5 66 5 99999999999999 5 77 77 9999999999 5 5 666666 5 5 7 00000000 77 5 2222 1 77 33333333333333333 6 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 7777 1 5 88 8 000000 0 8 8 8 11 5 1 888888888 5555555555555555 0 1 2 0 7 6 6 1 3 1 6 6 0000000 3 5 3 3 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8 777 1111111111 66 0 7 3 44 4 0 5 0 3 222 4 0 5 3333333333 1 5 8 5 666666 4444444 0 5 3 333 5 888 4 0 99999999999999999999999999999999999 111 0 0 33 777 5 55 3 5 1 66 0 4 7 8 66 11111 4 3 4 1 66 777777 9999 11111111111 0 0 88888 4 4 8 3 88 55 2 55 3 3 555 0 333 2 5555 444 999 2 2 44 2 33 2 2 0 2 3 6666 3 3 0 555555555555 3 6 1111111 2 2 5 5 2 777777 2 8888 5 2 2 5 2 555 6666 33 33 5 33 1 66 2 33 7777 2 2
lowQualScore : . . ... .... .. . . . .. . . ........ . ...... .... .... . .... ... ...... . .. .. . .. . .............. . .. .. .......... . . ...... . . . ........ .. . .... . .. ................. . ...................................................................................................................................................... . .... . . .. . ...... . . . . .. . . ......... ................ . . . . . . . . . . . . ....... . . . . .................................................................................... . ... .......... .. . . . .. . . . . . ... . . . .......... . . . . ...... ....... . . . ... . ... . . ................................... ... . . .. ... . .. . . . .. . . . . .. ..... . . . . .. ...... .... ........... . . ..... . . . . .. .. . .. . . ... . ... . .... ... ... . . .. . .. . . . . . .... . . . ............ . . ....... . . . . . ...... . .... . . . . . ... .... .. .. . .. . .. . .. .... . .
lowQualScore : 0 0 555 2222 22 5 8 2 22 2 0 88888888 5 444444 0000 8888 0 3333 999 777777 0 66 99 0 99 0 44444444444444 7 99 99 0000000000 7 7 444444 7 7 8 77777777 99 7 1111 9 99 99999999999999999 7 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8 0000 4 7 66 4 888888 6 0 0 0 00 8 4 444444444 2222222222222222 4 0 2 6 3 7 7 5 3 0 7 7 0000000 2 0 2 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 444 2222222222 33 1 4 4 11 2 1 0 0 3 888 3 4 0 1111111111 7 7 4 7 444444 8888888 0 0 2 888 0 888 0 9 66666666666666666666666666666666666 444 0 9 11 222 0 22 4 0 1 66 7 4 9 9 11 33333 4 3 4 9 11 222222 4444 44444444444 1 1 66666 4 4 9 3 66 00 4 00 6 6 888 7 666 9 7777 777 222 7 7 99 9 99 7 7 3 7 1 5555 1 1 2 888888888888 1 2 3333333 9 9 3 3 7 777777 1 3333 3 5 5 3 9 000 1111 99 99 7 99 6 44 9 99 4444 9 9
consensus : TATTCGACATGCATGNANATGTACA-GTATATACAG-TGCAT-TGGCGAATTCTGAGANAAAGA-A-GGGAGAANGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCCCT--TTCTCTGGGACACCTA---TGTAGTTTTTTT-AAAAACATGTTCAAAAG--GTCTT-TG--C-T--------------AT-TA--A--AA---A---T--TAAC-T-A------GCACTGAATG-GTG-ATGGGTTTTCTTTC--------TGTACTAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT--TTTACCTG-AA------CT-T--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATGTATTTT-C------------A----------TGC------------TTTTTCAAAAATAAAAATG----AATAATCAGTAT-TT-TTCATTAAATTCATATTCATAAACGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCAA-TTA-----GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCNAATACAACCTGCTTCGAAAGTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTTATAACTT-TT-ACAG-TTCCGCATAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TTT-AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAN-----GCGAA------------AACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGTCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTG-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTCGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AN-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
Reference ( family-2210 ) : TATTCGACATGCATGNANATGTACA-GTATATACAG-TGCAT-TGGCGAATTCTGAGANAAAGA-A-GGGAGAANGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCCCT--TTCTCTGGGACACCTA---TGTAGTTTTTTT-AAAAACATGTTCAAAAG--GTCTT-TG--C-T--------------AT-TA--A--AA---A---T--TAAC-T-A------GCACTGAATG-GTG-ATGGGTTTTCTTTC--------TGTACTAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT--TTTACCTG-AA------CT-T--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATGTATTTT-C------------A----------TGC------------TTTTTCAAAAATAAAAATG----AATAATCAGTAT-TT-TTCATTAAATTCATATTCATAAACGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCAA-TTA-----GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCNAATACAACCTGCTTCGAAAGTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTTATAACTT-TT-ACAG-TTCCGCATAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TTT-AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAN-----GCGAA------------AACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGTCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTG-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTCGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AN-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
gi|1 : TATTCGATATGCATGGAAATGTA----TATATA----TGCAT-TGGCGAAT---GAAATAAAAA-A------AAAGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCA-T--TTCTCTGGGACACCTAGTATGTAGTTTTTTTTAAAAAGATGTTCAAATA--GTCTT-TG--C-T--------------AT-TC--A--AA---A---T--TAAC-T-A------GCACTGAATG-GTG-ATGGATTTTCTTTC--------TGTATAAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT--TTTACCTG-A-------CT-T--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATATAT-----------------A----------T-----------------TTCAAAAATAAAAATC----AATAATCAATAT-TT-TTCATTAAATTCATAT--------GAGCCAAGA-TATTGTTCATATTT-GCAT--CAA-GGCAAATTA-----GATTAAGAAA---T-TA---------CCCCACCCCCCAATA-AACCTGCT-CGAA-GTGT-G-CCC-AAG-C-GAGGAAAGGA-AAG-TTTTTTT-CGGGGGGGGGGGGGGGGGGTCCCGTCT-ATTGTTATTTAG-TACATT-TAAGTAT-------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGGTTTGAACG-AAACGTATATTGATGGTTATAACTT-TTTACAG-TTCCGCATAATATATTTTCCATATTTA-GT-G-CTACGTA-TAGATCTATAAACCGAATGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TT--AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAG-----GTGAA------------AACTATAT-ATTGCTTC-ATTAAAAA-GGTCATGAAA--TAATGT-CACATT-CTTTGTAAGC-GGG-AAAGCACGCACGAGGTCAGTTTA-ATGTTGCCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTA-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGC-AAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-ATTGAAAAAC---AA---AGG-AGA-CT-AAAT-AAAACTAA-TC-T-GAAA-AC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTAG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
gi|10 : --AG-CATAT-----T----TCA-----GTGAA------------AAC---AT-ATTGCTTCCATTAAAAAAGGTCATGAAA--ATATGT-CAAGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCAGTTTA-ATGTTG-CTTTTGTGTTTAGA-C--C-C-CGCCAC-TTAT-T-TAT--TATTA------TT----CATGAAAGAGCAA-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TTAAAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG--GA-CT-AA-T-AAAACTAA-TC-T-G-AA-CC-A----TT----------TGTC------------T-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CA
gi|11 : --AG-CATAT-----T----TCA-----GTGAA------------AAC---AT-ATTGCTTCCATTAAAAAAGGTCATGAAA--ATATGT-CAAGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCAGTTTA-ATGTTG-CTTTTGTGTTTAGA-C--C-C-CGCCAC-TTAT-T-TAT--TATTA------TT----CATGAAAGAGCAA-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TTAAAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG--GA-CT-AA-T-AAAACTAA-TC-T-G-AA-CC-A----TT----------TGTC------------T-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CAct
gi|13 : CATTAAT--TGATGT-CACGTG-CTTTATAAAC-AGAGAAAGTA-G---GATATCTCTTCATATGTTGTCCTTTGTTTCTAGA-C--CTG-T-CCAT-ATTGTT-TAC--CATTA------TT----CATGAAGGAA--------TTG--GA--------TGC----TAA-AG-AATTT-AAA--AATCAG--CCT--ACTTTTC-GGCATTCCATCTTG------------AC---AA---AG---AA-CT-AT-C-AAAACTAT-TCAT-AAAA-Cct
gi|14 : gaaaataaaatatatgtaatgattctaacgcaatttagaatttccTCCA--AAAATAATTCATGAAA--TAATGT-CATGTG-CTGTATAAAC-GGGGAAAGCACGAAAGAGGTCCATTGA-AGGTTGTCTTCTGTGTTTAGATC--C-G-T-CCAC-TTTGTT-TAT--TATTA------TTCATGCATGAAATAAT-A-C--CATAGCGAAAA---C-TGCTTGATAA-AATGG-TT-AAAT-ACCCAG--TTA--ATTTTTC-GGCATT---TCACGT-T-AC-GAAATAA---AA---AGA-TGA-TT-Aatc
gi|15 : CTGAATG-GTG-TTGTGTTTTCTTTC--------TGAACCATA--CTT-TTATT----CATTAT--ATGCATATTTTTGGTTCATTAT--TTTTCCTGCAA------TT-TAAT--TAACGTAAAAT-A--------------A--AAGACAT------ATGCGTATAGA-------GTA-----------------CACGTATTTTAC------------AGCATTGCATGTGC------------GTTTTCAAAGCTAAAAATGAATTAATAATAAGTGT-TTCTTCA-TAAATtagacagttttcag
gi|16 : ACATGTGTATACAG-TGTATATGG---ATTCTGAGAAAAGGA-A-GGG--------------TT-TCTAGGGGTTGGCCCCACCCCCCTCTTTCTCTGGGACATTTA---TGTAGTTTTT------AACATGCTCAAAAG--GTCTT-TG--T-TATAAATCTTTAATGAT-TA--A--AAG--A---T--TAAC-T-A------GCACTCAATG-GTG-ATGATCTGAGTTTC--------TCTACTAGA--ATT-TTAAA----CATTGC--ATGTGCA-------------aattataccagcccaaaa
gi|17 : ATTT-GT-ACAGATTTC---TGATATAATTTCT---TTCA-GC-GTCTGTATAA-------ATA--CCGAACTTGCTTTTTA--------T-AATT-AA-AGTTTTAAA--CGT-GTTAAG--GTATTTAATAATGC-ATTA-TCACGACG---A--ATTT--AA-t
gi|18 : aagTCTGGGACACCTA----GTA-----TGT-ATATAGATGT-CAAAAGTCGTTTTGTGGGCAT--------------ATGTA--ACGAA---AGATT--TAAC-T-ACATGTAGCACTGGATGTGTG-ATGG--TTTCTTTCATCTCTCCTGTACTAAAAACTTATTATGAGATCA--GCTTATGTACA-------------AT--TCTACCTG-AAAAATACCT-T--TCAT---------TGA--------------CTTCAGACTT------AC----------------GTA-----------------CAattagcattaaaaaaacccgatcacatacattatatgtattcagtgaaaaccatgcatactagtttccatttgataaaaaa
gi|19 : tA-G-AT-GAAAGACTCTAAGTGAGG-AGT-CT-AT-T-AAAACTAA-TC-TGGAGA-AC-A----CTGTCT-GTTGGTGTC------------TAA-AGTAT------TCT-AAT-ATTA-ACTTTCG-TG-CTTGACAACTA---A-TA-AGTATGC-TTTT---ACCGA----GAACGGCTG--AAAAG-GGGCCAG--AC-CAATG-G-TTGTT--TT---AATCT-CAaactata
gi|2 : tatttgttgtga--GTCTT-TG--C-T-----------------TAGCA--AA---A---T--TAAC-T-A------GCACTGAATG-GTG-ATGGATTTTCTTTC--------TGAAATAAA--CTT-TTACG----CATTGC--ATGTACA-------------GGA-TTTACCTG-AA------CTAT--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATATAT-----------------A----------T-----------------TTCAAAAATAAAAATC----AATAATCAATAT-TT---CATTA--TTC-TAT------ATGAGCCAAGA-TATTGT-CATATTTTGCAT--CAA-GACAA-T-A-----GATTAAGAAA---T-TA-------ACCCCCCCCCCCCAATA-AACCTGCT-CGAA-GTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGAGGGTCCCGTCTTATTATTATTTAG-TACATTAT--GTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----ATCAGAGTTTGAACG-AAACGTATATTAATGGT-ATAACTTATT-ACAG-TTC-GCATA-TATATTTTCCATATTTGTGT-GGCTACGTA-TAGATCTATAACC-GAGTGTGCTTTTAT--------T-AA-TAAATAGTTGTAAAAGCGT-TTT-AG--ATATT------TGC-AATG-TCACTACG---AATAAAT--AA-CATGTATATTT----CAG-----TTGAA------------AACTATAT-ATTGCTCTTATTAAAA--GGTCATGAA---TAATGTTCACGTT-CTTTGTAATC-GGGAGAAGCA-GCACGAGGTCAGTTTA-ATGTTGCCTTTTGTG---ATA-C--C-G-C-CCAC-TTTA-T-T-T--TATT-------TT----CATGAA-GAGC-AAC--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAAGAATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-G-AAAAC---AA---AGA-GAA-CTAAA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGT--------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGCTTTTT---ATTAG----CAACGG--G--AAAAG-GGGCTAA--CCACAATGTG-TTGTT--T----AA-CT-CATat
gi|20 : aAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAACGG--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATC
gi|21 : AG--ATTCAG--CAA--ATTGTT--GGCATT---TCTTGAGG-AT-GAAAAAC---AA---AGG-AGA-CT-AA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTTGTTA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAAC-G--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATCctt
gi|22 : cTCAGTGTTTGAACG-AAACATATGTTGATGATTAct
gi|23 : tgtgacctatattgtatattatatattatacT---TCTCGA-------AAAAAT---AA---TCG-GAA-CT-AT-T-TAAAGTA--TC-T-AAAA-ATGA----TGGTCT-A-TAGCGTG------------T-A-CATA-------TAA-AAT-TTTA-ACTTTTG-TT-C------AGT----A--G-A-TATGC-TTTG---GTTGA----CCACGG--A--AAAAC-GGA-TAGAATC-CAATC-G-TTATT--TC---AC-TT-CATCacggatttctgtatttatttgagaaaacccccacaaacctattagattaagaaataaaatttgtaccgatttctggtttttttggggtttttttccagtagt
gi|24 : C---AA---AGG-AGA-CT-TC-T-GAACCTAT-TC-A-GTAA-CC-A----TTGTCTTG-TAGTGCC------------A-A-AGTACAATGTATAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-T-TGC-TTGT---ATTGG----CAACGG--G--AAAAG-GGGTCAG--CTACAACA-T-ATGTT--TT---AA-CT-CATCct
gi|25 : GGAAATCACGCACGAGGTCCATTTA--------------TATTTAGA-C--CCG-C-CCAT-TTTG-TTTATTATACTGC-----TT----TATAAA--------C--TATATTTAAAA---TATACCTC-----------TC-AAA--ATTCAG--T-----TTTTTC-CACATT---TCTCGA-G-AC-GAAAAA-------------------------AAAACTAA-TC-T-GAAA-ctt
gi|27 : GAGGTGGTTCAGGGGTTGG----ATCCCC-T--TTCTTTGGAACAC-------------TTTTT-AAAA---TG------AG----CTT-TG--C-T--------------AT-TA--A--AA---A---GAGTAAC-TTA------GCACTGAATG-GTG-ATG
gi|28 : tcatggattttcaggtaaaggtattcgaaaatttcATTAGGATTTCAACG-AAACGTATGCTGACGG---TAA-------AGGA-TTCAGCAT-ATAT--TATCCGT-CTAA-GT-G-C-ATGTAat
gi|29 : ataATTAGGGTTTGAACA-AAACATATGCTGATGATTA----------ATAG-TTCTACTTAATGTctaagtattcaaatagcagtaagctttatactgatttctaatttcattttt
gi|3 : tatgctgggcacttgtgacatatattttgtacataataatataTATTCGACATGCATGTACATGTACA-GTATATATA--TGCAT-TGGCGAATTCCGAGAGAGAGAGA-GAGAGAAGGGGGGGGGGTG-TCCAGGGGTTGG----ATCCCCTT--TTCCCTGGGTCACCTA---TGTAG--TTTTT-AACAACATTTTCAAAAG--GTCTT-TG--C-T--------------AT-AA--A--AG---A---T--TAAC-T-A------GCACTGAATG-GTACCCGGGTATTCTTTT--------TGTACT-AA--CTT-TTACA----CATAAC--ATGAACA-------------ATTATTTACTTG-A--------T-T--T-----------------------------C--AAAACTT------AC-------GA-------GTACATATAGTATACATGTACATGCATTTT-CGCTGCATTGCACA----------TGC------------TTTTTCAAAAATAAAAATG----AATAATCAGTATCTT-TTC-----ATTCATATttgaagtactatt
gi|30 : ggctatgtgccgcggcccgtagtatattttttcccgtttcatgctagaatttacatggttcaattcatcatttgtacttttatgatttcaatgctacatggtgcattcattcactacagtctgagtttcagcttggggtttcctcattaactgaaattctcataggcatttggccccgtccacactatcatattatattcgagagaaggtacggttaaataatccaggctgtgtttgtatattattgaaaacttttaaattttgcacagcaatagccgtacgttacagtgtacatcgctgatattttacaatataaatcggaaagaatttcactagaacctctccattattgaactccataacctacctgaaataaaaggttaaatcacgtgatcctattgcattgtccgctgtttttgtaacataaactcgacttcaccatcatgaattttaattaagagtcATCTATAACC-GATTGTGCTTTTGATACACATGT-AACTAAA-A-TTGTAAA--CGTGTTC-AG--GTGCT------AGC-AGTG-TCGCTACGA--A-TTTAT--AA-CATGT-----
gi|31 : t-AT-GAAAATG---GA---AGGCAGA-C--AA-T-AAA-CTAT-TC-G-AGAA-TC-A----TTGTCT-G-TGGTGTT----------------ATTA-------TATCAAT-TTTA-ACTTTTG-TA-C------A-T----A-TA-A-T-Ta
gi|32 : atTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATCag
gi|33 : acTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATCct
gi|34 : acA-ACTTTTG-TA-C------AATTGATA-TG-A-T-TAC-TTTTCTTATTGA----CAACAG--G--AAAAG-GGGCCAG--CTCCATCA-G-TCGTT--TT---AA-AT-CAct
gi|35 : AGTGC-GGCCCCAAGGCTGAGAAAAGGACAGG-TTTTTTTTacct
gi|36 : -A-T-TGC-TTTC---ATTGG----CAACTG--G--AAAAG-GGACAAG--CTTCAATA-G-TTCTT--TG---AG-TT-CATCtattttgtgagcataatccaattgtgacatatatat
gi|37 : tacaatAAATTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-CGTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-ctt
gi|4 : CTTTC--------TGTACTAAA--CTT-TTACG----CATACC--ACGTACA--------------T--TCTACCTG-AA------AT-T--T--A---------T-AAGCCTAAAAGATTTC--AAGACTTGGCAATACATA----GATGCACATGTA-----------------CATGTATTTT-C------------AC---------TGCATCGCAAGTGCTTTTTTCAAAAAT-AAAATG----AATAATCGATGTCTT-TTCG-TA----CATGATTAT--ACAAGCCCAGATTTTTGT-CATATTT-TGATTACGAAAATAATTTAAAAATGATTTAAAAACTGTCTANNNNNNNNNNNNNNNNNNNNNNNNNAACCTG--TCTAAAATGTGG-CCCCGAGCCCGAAAAAATGA-ACGATTTTTTTT
gi|4 : ATCAGGGTTTGAACG-AAACGTATGC--AAAGTTA----------ACAG-TTCCGC---ATATAATTTCCGTATTTA-GT-atttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataatcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|40 : ctttctgtactaaacttttacgcataccacgtacattctacctgaaatttataagcctaaaagatttcaagacttggcaatacatagatgcacatgtacatgtattttcactgcatcgcaagtgcttttttcaaaaataaaatgaataatcgatgtcttttcgtacatgattatacaagcccagatttttgtcatattttgattacgaaaataatttaaaaatgatttaaaaactgtctannnnnnnnnnnnnnnnnnnnnnnnnaacctgtctaaaatgtggccccgagcccgaaaaaatgaacgattttttttatttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataGTTTTGTT-AAAAATATGTTCAAATG--ATCTT-TG--C-T--------------AT-TA--A--AAAATA---T--TAACTT-A------GCACTGtgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|44 : CATCTA---CGTAGTTTTT------AACGTGTTCAAAAA--GTTTT-TG--T-T--------------A
gi|5 : AATCAGTAT-TG-TTCATTAAATTCATATTCATAAACGAGCCA-GA-TATTGT-CATATTT-GCAT--CAATGGCTA-TT------GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCAAATACAACCTGCTTCGAAAGTGT-G-CCGCCAG-CCGAGGAAAGGA-AAG-TTTTTTTTC-------GGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACGTAT--TGATGGTTATAACTTATT-ACAG--TCCGCATAATAATATTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAA--------TAAACTAAA-AGTTGTAAAAGCGT-TTT-AAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT-----TA---CAC-----TCGTA------------CACTA-ATAATTGCTTTTATTA
gi|6 : AATCAGTAT-TG-TTCATTAAATTCATATTCATAAACGAGCCA-GA-TATTGT-CATATTT-GCAT--CAATGGCTA-TT------GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCAAATACAACCTGCTTCGAAAGTGT-G-CCGCCAG-CCGAGGAAAGGA-AAG-TTTTTTTTC-------GGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACGTAT--TGATGGTTATAACTTATT-ACAG--TCCGCATAATAATATTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAA--------TAAACTAAA-AGTTGTAAAAGCGT-TTT-AAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT-----TA---CAC-----TCGTA------------CACTA-ATAATTGCTTTTATTA
gi|7 : TCAGGGTTTGAACG-AAACGTATGC--AAAGTTA----------ACAG-TTCCGC---ATATAATTTCCGTATTTA-GT-
gi|7 : CCGAATGTGCTTTTGA--------T-AATTAAA-AGCTGTATACGTGT-TT--AA--ATATT----------AA-A-TTA--ACA---G-TATATGCAA-CATAT-----TTATTCAT-----GTGGA------------AATCATGC-ATTGCTTCCATTAAAAAAAGTCATGGAA--TAATGT-CCCGTA-CTTTGTAA-C-TGGGAAAGCTCGCAAGAGGTCCATTGA-ATGCTGTCCTTTG-GTTTAGACC--C-GCC-CCAA-TTTGTT-TAT--TATTA------TT----CAT------------------GCAAAAA---C-TGCTTGATAA-AG-GG-TTCAAT--ATTCAA--TTA--ATTTTTC-GGCCTT---TCTCGA-G-AA-GAAAAAC---AG---AG---GA-CT-AT-G-AAAACTCT-TC-A-GAAA-CC-A----TTGCCT-G-TGGTGAC------------T-A-AGTA-------TAtgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtccgaatgtgcttttgataattaaaagctgtatacgtgtttaaatattaaattaacagtatatgcaacatatttattcatgtggaaatcatgcattgcttccattaaaaaaagtcatggaataatgtcccgtactttgtaactgggaaagctcgcaagaggtccattgaatgctgtcctttggtttagacccgccccaatttgtttattattattcatgcaaaaactgcttgataaagggttcaatattcaattaatttttcggcctttctcgagaagaaaaacagaggactatgaaaactcttcagaaaccattgcctgtggtgactaagtata
gi|8 : tcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtGTATA-GTATGTACAGCTACAT--GGCGGAATCT----CAAAGA-ACAGGAAAATGGGGGG---------AGGGGTTGG----ATC
gi|9 : taggtctgagtttagcttggtgttcctcagaaattggagatcctataggcatttggtcccgcccaatatatgatacaatctagaaacgtgtgtctcgacagaaggttatgggtttaaataattagagcatttttatatataattgaaaacttccattttcgtatagagaaaccgtacatattcataatccaataagaaaatatcagcaaaatgtcagtaaacctctctattaatggaaacctgtttttgtactcattgacctatctgaataagcttggtgttaggcaaaagtatatcaacgtgatacgaagcacttgtccatcttttagacatgattacgctttcagacgtcacagactttaagacaagtgtatttggagtaatgttggctgaATT------TGC-AATGGTCACTACGGACA-TAAAT--AAGCATGT-----G----TATATGCAGCAAATATTATCAGGTTAACTATGT-ATTTGTTCCATATAAGAAGGTCATGAAAAATAAAGT-CACGTTTCTTTGTAAGCCGGGGAAAGCACGCACGAGGT-------------GT---TTGTGTTTAGA-CGCC-G-C-CCACAGTTG-T-T----TATTAAAATATTT----CATGAAAGAAC-A-GAGCCTGGCGAAAAACCT-TGCTTGATAATAG-GGCTT-AAG--ATTCAGAACAAGAATT--TCAGGCATT---TCTTGA-GAAC-GAAAAA----AA---AGG-AGACCT-AC-TGAAAATTAATTC-T-GAAATCC-GCACTCTGTCT-G-T-ATGTCCGCTTCTGATGTT-A-A-TC-------TAT-ACTATATA-ACTTTCGATAGC------ACT----A-TAGA-T-AGC--TTT---ATTGGATAATAGCGA--GATAAAAG-GGGCCAG--CTACTATA-GTTTGTTGATCCATAA-CTACATC
blockSeqs : T C CAT CAGC AT C T TG A GAGAGAG G AGGTGG CCCC CTCT T T GTT GTATA C CT TC G GG A ATAAATCTTTAATG G GC CG AGATT T T CATGTA T C G ATCTCTCC AA A AGAT T TT TTTTTGGTTCATTAT C AATTTATAAGCCTAAAAGATTTCAAGACTTGGCAATACATAGATGCACATGTACATGTATTTTCACTGCATCGCAAGTGCTTTT AATT C C AT A TCATAA A T . T TA A A TTTAAAAAT CTGTCTANNNNNNNNN C N T A G G A G C C A GGGGGGG T G A A GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A ATT TAACTTATT AT A G AA A T G T ATG C T TACACATGT T T A G TAAGC TAATAAT A G A GAC A TGC G GTATATGCAGCAAATATTATCAGGTT TAT A AA AAA T TT G C C AG T T T GC CCG A T T A TA AAATAT CATG AGAACAGAG ACCT T T T A GA AA A GA G A CCA GG . CTCT GTG GCA C A A G AT A G T G CACT T T CGCTTCTGATGT A C CAATGTA C A C T G TTGACA C TGAT A G G A T CTT ATAA CT AT A AA A GT T GA CCAT T A
blockSeqs : CA CAG T C T CG G ACAGGAA T GGGTG . TT C T GTT TTAAA G TT . . . . . . . . AATAT . . . . . T . . . . T . ATTA . ATTTAATTAACGTAAAATAAAAGACATATGCGTATAGAGTACACGTATTTTACAGCATTGCATGTGCGTT . C . AT A TCATAA A . . . . T A TA GTTATAAAGCAA N C T A . . A C T . . . T G A A GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A GTT TAACTTATT T A A AT G . G G ATG C T TA C . A . TAAGC T A . A A . T . ATATTTCAGTTGAA CAT A AA A . T G . C AG . T C . CCG . T . A . C . AGAGCAAC TA . . C A T . A . G . . GA . C . AT . . A . A . . . . . . . . . C T . . C A . . C A A . . A . . . . . A . A G . . C . .
blockSeqs : TA TA . . T T C AGGG . TT . T C C GTT TTAAC C TT . . . . . . . . AGAG . . . . . A . . . . T . GGA . TTTCAAAACTTACGAGTACATATAGTATACATGTACATGCATTTTCGCTGCATTGCACATGCTTT . . . AT A TTAT . . . . . T T TT GTTATAAAGCAA A C T A . . G . C . . . T . A . GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . GCT TAACTTATT T T A AA G . . . TA C T TA C . A . TAAG A . . A . . T . TTATTCATGTGGA TAT . TA A . T A . C TC . C . . TGT . T . A . . . AGAGCAAC C . . . C . . C . T . . G . C . GA . . T . A . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . A G . . C . .
blockSeqs : . . C . G TTAAA T TT . . . . . . . . GAT . . . . . G . . . . A . AT . ACTATTTTACAAGACTTACGAGTACATATATAT . . . A . . . . . . . . T TT TTAAC A . . A . . C . C . . . GCT TAA T A A TA A . . . A C T T C . C . TAG T . . A . . T . TACACTCGTA TA . AA T . G A . C CA . T . . CGC . . . A . . . ATAATAC C . . . . . . T . T . . G . C . AG . . T . T . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . A G . . T . .
blockSeqs : . . . . C T . . . . . . . . AT . . . . . . . . . . A . T . . . G . . . . C . C . . . GC . T A A TA A . . . . . T T . . . CAG T . . A . . T . TACACTCGTA TA . AA A . G T . C AG . T . . GCC . . . A . . . GAGCAAC C . . . . . . A . G . . T . A . GA . . A . A . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . A C . . A . .
blockSeqs : . . . . . . . . . . . . AT . . . . . . . . . . . . . . . . GC . T . . AA G . . . . T . . . . AA T . . . . . . . TTCAGTGAA . . . A . T G . C CA . . . . GT . . . A . . . GGAA C . . . . . . A . G . . G . C . GA . . A . A . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . A A . . A . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . . . . TTCAGTGAA . . . . A . . . CA . . . . GC . . . . . . . C C . . . . . . A . G . . G . C . GG . . A . A . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . A G . . C . .
blockSeqs : . T . . . . . . . . . . GC . . . . . . . . . . . . . . . T . T . . G . C . GA . . T . A . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . A G . . T . .
blockSeqs : . . . A . T . . G . T . GA . . C . T . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . C A . . C . .
blockSeqs : . . . . . . . G . C . G . . A . A . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . T A . . C . .
blockSeqs : . . . G . G . . T . T . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . A A . . T . .
blockSeqs : . . C . . . . C . A . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . G . .
blockSeqs : . . . . . . . . T . . . . . . . . . . C . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : T*** TTAAA* AGAT****** AT*************** TCAT** TT******* GTTATAAAGCAN**** TAA******* ATG TAAGC* TTCAGTCGNA************************* AA CCN** N*
originalCons : TATTCGACATGCATGNANATGTACA-GTATATACAG-TGCAT-TGGCGAATTCTGAGANAAAGA-A-GGGAGAANGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCCCT--TTCTCTGGGACACCTA---TGTAGTTTTTTT-AAAAACATGTTCAAAAG--GTCTT-TG--C-T--------------AT-TA--A--AA---A---T--TAAC-T-A------GCACTGAATG-GTG-ATGGGTTTTCTTTC--------TGTACTAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT--TTTACCTG-AA------CT-T--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATGTATTTT-C------------A----------TGC------------TTTTTCAAAAATAAAAATG----AATAATCAGTAT-TT-TTCATTAAATTCATATTCATAAACGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCAA-TTA-----GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCNAATACAACCTGCTTCGAAAGTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTTATAACTT-TT-ACAG-TTCCGCATAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TTT-AG--ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT-----T----CAN-----GCGAA------------AACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGTCTTTTGTGTTTAGA-C--C-G-C-CCAC-TTTG-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTCGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AN-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
finalCons : TATTCGACATGCATGNANATGTACA-GTATATACAG-TGCAT-TGGCGAATTCTGAGANAAAGA-A-GGGAGAANGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCCCT--TTCTCTGGGACACCTAT---GTAGTTTTTTTAAA-AACATGTTCAAAAG--GTCTT-TG--C-T--------------AT-TA--A--AAAGAT------TAAC-T-A------GCACTGAATG-GTG-ATGGGTTTTCTTTC--------TGTACTAAA--CTT-TTACG----CATTGC--ATGTACAAT---------------TTTACCTG-AA------CT-T--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATGTATTTT-C------------A----------TGC------------TTTTTCAAAAATAAAAATG----AATAATCAGTAT-TT-TTCATTAAATTCATATTCAT--ACGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCAATT-------GATTAAGAAAGTTATAAAGCAN----CCCCGCCCCCNAATACAACCTGCTTCGAAAGTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTTATAA-------ACAG-TTCCGCATAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGT-TTTAAGC-ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGTTTCAGTCGNA-------------------------AACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGTCTTTTGTGTTTAGA-C--CCCN--CCAC-TTTG-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTCGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AN-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTTGTTAATTGATGACAAACATAATCTTTCATGAAGAATTATCAATCCTTGATGTTTATAATCAAATTCTATTAAAAAATAACAAATCTAAACCTGCCCGAAGCTAGTGTAATCCAAAGCGCGAGAATATATACTTTATTTTTGTGAGCACAATCCATTTGTGACATGTTTAATACATTTATAGTATCTCGGTTTGAACCAAACGTGCATATAATTTCGGTATTTAATTGAATACACTCTATTTGATTAAATTTAAAAATTGTACTGATTTTTTTTTCCAG
Unaligned ( gi|26 ): GCATATGCAGCATTTACATTCAGTGAATATCACACATTTATTTCTCCATTCATAGAAAAAGAAATAATGATAATGGCACGTGCTTTGACAACAAGGAAAACATCAAACCAATTCATATCCGAAATTGAATGTTGTCCT
Unaligned ( gi|38 ): CCCCCCCCCCCCCCCGGTTACGGCCTTGTATGCTATACATATGTTATGCGAAAGGGAAGGGGG
Unaligned ( gi|39 ): TATGTCTCTGCTGTAATCAACTAGCGTAAGGGTGACTGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|41 ): TGCTGTAATCAATAGCGTAAGGGTGACTGGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|42 ): CTATGGGTGTATATGTATATATTATGGGTATAGAAGATTCGGTTTT
Unaligned ( gi|43 ): ATACTTTTCATAGGATATTTTAATATTTTGTGCCAGGTACAT
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222 11 22222222 111111 1111 2222 1111 111111 22222222222222222222 1 111111 22222222 1111 44444444444444444 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1111 1 11 11 1 11 1 333333333 3333333333333333 1 1 1 3333333 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6666666666 1 1 111 2222222222 22 1111111 1 111 4444444444444444444444444444 111 1 111 1 111111 22222222222 1 111111111111 1111111
lowQualScore : 1 1 333 2222 33 2 0 3 33 0 1 99999999 4 222222 7777 3333 1 7777 666 222222 3 11 66 5 66 5 99999999999999999999 77 5 1 666666 5 5 7 00000000 77 5 2222 1 77 33333333333333333 6 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 7777 1 5 88 8 1 1 11 88 0 8 8 8 11 5 1 8 000000000 6666666666666666 0 1 2 0 7 6 6 1 3 1 6 6 0000000 3 5 3 3 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8 777 0000000000 888 1 4 3 44 4 0 5 0 3 222 4 0 5 3333333333 1 5 8 5 22 4444444 0 5 3 333 5 888 4 0 4444444444444444444444444444 1 111 0 0 33 777 5 55 3 5 1 66 0 4 7 222 4 4 3 4 1 66 777777 9999 11111111111 0 0 88888 4 4 8 3 88 55 2 55 3 3 555 0 333 2 5555 444 999 2 2 44 2 33 2 2 0 2 3 6666 3 3 0 555555555555 3 6 1111111 2 2 5 5 2 777777 2 8888 5 2 2 5 2 555 6666 33 33 5 33 1 66 2 33 7777 2 2
lowQualScore : . . ... .... .. . . . .. . . ........ . ...... .... .... . .... ... ...... . .. .. . .. . .................... .. . . ...... . . . ........ .. . .... . .. ................. . ...................................................................................................................................................... . .... . . .. . . . .. .. . . . . .. . . . ......... ................ . . . . . . . . . . . . ....... . . . . .................................................................................... . ... .......... ... . . . .. . . . . . ... . . . .......... . . . . .. ....... . . . ... . ... . . ............................ . ... . . .. ... . .. . . . .. . . . ... . . . . . .. ...... .... ........... . . ..... . . . . .. .. . .. . . ... . ... . .... ... ... . . .. . .. . . . . . .... . . . ............ . . ....... . . . . . ...... . .... . . . . . ... .... .. .. . .. . .. . .. .... . .
lowQualScore : 0 0 555 2222 22 5 8 2 22 2 0 88888888 5 444444 0000 8888 0 3333 999 777777 0 66 99 0 99 0 77777777777777777777 44 7 4 444444 7 7 8 77777777 99 7 1111 9 99 99999999999999999 7 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8 0000 4 7 66 4 4 4 00 33 6 0 0 0 00 8 4 0 222222222 4444444444444444 4 0 2 6 3 7 7 5 3 0 7 7 0000000 2 0 2 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 444 9999999999 000 9 8 4 11 2 1 0 0 3 888 3 4 0 1111111111 7 7 4 0 99 8888888 0 0 2 888 0 888 0 9 2222222222222222222222222222 0 444 0 9 11 222 0 22 4 0 1 66 7 4 9 444 4 4 3 4 9 11 222222 4444 44444444444 1 1 66666 4 4 9 3 66 00 4 00 6 6 888 7 666 9 7777 777 222 7 7 99 9 99 7 7 3 7 1 5555 1 1 2 888888888888 1 2 3333333 9 9 3 3 7 777777 1 3333 3 5 5 3 9 000 1111 99 99 7 99 6 44 9 99 4444 9 9
consensus : TATTCGACATGCATGNANATGTACA-GTATATACAG-TGCAT-TGGCGAATTCTGAGANAAAGA-A-GGGAGAANGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCCCT--TTCTCTGGGACACCTA---TGTAGTTTTTTT-AAAAACATGTTCAAAAG--GTCTT-TG--C-TA-------T-TA------A--AAAG-ATT-AAC-TA------GCACTGAATG-GTG-ATGGGTTTTCTTTC--------TGTACTAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT--TTTACCTG-AA------CT-T--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATGTATTTT-C------------A----------TGC------------TTTTTCAAAAATAAAAATG----AATAATCAGTAT-TT-TTCATTAAATTCATATTCATA--CGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCAA-T-------T-GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCNAATACAACCTGCTTCGAAAGTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTTATAACTT-TTACAG--TTCCGCATAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGTTTTAAG-ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT----TT-----CA-G---------TC--GNAAACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGTCTTTTGTGTTTAGACCC-CNCC-AC-TTTG-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTCGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AN-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
Reference ( family-2210 ) : TATTCGACATGCATGNANATGTACA-GTATATACAG-TGCAT-TGGCGAATTCTGAGANAAAGA-A-GGGAGAANGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCCCT--TTCTCTGGGACACCTA---TGTAGTTTTTTT-AAAAACATGTTCAAAAG--GTCTT-TG--C-TA-------T-TA------A--AAAG-ATT-AAC-TA------GCACTGAATG-GTG-ATGGGTTTTCTTTC--------TGTACTAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT--TTTACCTG-AA------CT-T--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATGTATTTT-C------------A----------TGC------------TTTTTCAAAAATAAAAATG----AATAATCAGTAT-TT-TTCATTAAATTCATATTCATA--CGAGCCAAGA-TATTGT-CATATTT-GCAT--CAATGGCAA-T-------T-GATTAAGAAA--GT-TA-TAAAGCANCCCCGCCCCCNAATACAACCTGCTTCGAAAGTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGGTTTGAACG-AAACGTATGCTGATGGTTATAA------ACAG--TTCCGCATAATATAATTTCCGTATTTA-GT-G-CTACGTAATGGATCTATAACCCGAGTGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGTTTTAAGCATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT----TT-----CA-G---------TC--GNAAACTATAT-ATTGCTTCCATTAAAAAAGGTCATGAAA--TAATGT-CACGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCCGTTTA-ATGTTGTCTTTTGTGTTTAGACCC-CNCC-AC-TTTG-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTCGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AN-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
gi|1 : TATTCGATATGCATGGAAATGTA----TATATA----TGCAT-TGGCGAAT---GAAATAAAAA-A------AAAGGGGGGAGGTG-TCCAGGGGTTGG----ATCCCA-T--TTCTCTGGGACACCTAGTATGTAGTTTTTTTTAAAAAGATGTTCAAATA--GTCTT-TG--C-TA-------T-TC------A--AAA---TT-AAC-TA------GCACTGAATG-GTG-ATGGATTTTCTTTC--------TGTATAAAA--CTT-TTACG----CATTGC--ATGTACA-------------AT--TTTACCTG-A-------CT-T--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATATAT-----------------A----------T-----------------TTCAAAAATAAAAATC----AATAATCAATAT-TT-TTCATTAAATTCATAT--------GAGCCAAGA-TATTGTTCATATTT-GCAT--CAA-GGCAAAT-------TAGATTAAGAAA---T-TA---------CCCCACCCCCCAATA-AACCTGCT-CGAA-GTGT-G-CCC-AAG-C-GAGGAAAGGA-AAG-TTTTTTT-CGGGGGGGGGGGGGGGGGGTCCCGTCT-ATTGTTATTTAG-TACATT-TAAGTAT-------TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGGTTTGAACG-AAACGTATATTGATGGTTATAACTTTTTACAG--TTCCGCATAATATATTTTCCATATTTA-GT-G-CTACGTA-TAGATCTATAAACCGAATGTGCTTTTAA--------T-AACTAAA-AGTTGTAAAAGCGTTT--AG-ATATT------TGC-AATG-TCACTACG---A-TATAT--AA-CATGT----T------CA-G---------GT--GAAAACTATAT-ATTGCTTC-ATTAAAAA-GGTCATGAAA--TAATGT-CACATT-CTTTGTAAGC-GGG-AAAGCACGCACGAGGTCAGTTTA-ATGTTGCCTTTTGTGTTTAGACCG-C-CC-AC-TTTA-T-TAT--TATTA------TT----CATGAAAGAGC-A-C--CCTGGC-AAAA---C-TGCTTGATAA-AG-GG-TT-AAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-ATTGAAAAAC---AA---AGG-AGA-CT-AAAT-AAAACTAA-TC-T-GAAA-AC-A----TTGTCT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTAG----CAACGG--G--AAAAG-GGGCCAG--CCACAATG-G-TTGTT--TC---AA-CT-CATC
gi|10 : --AG-CATAT----TT-----CA-G---------T---GAAAAC---AT-ATTGCTTCCATTAAAAAAGGTCATGAAA--ATATGT-CAAGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCAGTTTA-ATGTTG-CTTTTGTGTTTAGACCC-CGCC-AC-TTAT-T-TAT--TATTA------TT----CATGAAAGAGCAA-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TTAAAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG--GA-CT-AA-T-AAAACTAA-TC-T-G-AA-CC-A----TT----------TGTC------------T-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CA
gi|11 : --AG-CATAT----TT-----CA-G---------T---GAAAAC---AT-ATTGCTTCCATTAAAAAAGGTCATGAAA--ATATGT-CAAGTT-CTTTGTAAGC-GGGGAAAGCACGCACGAGGTCAGTTTA-ATGTTG-CTTTTGTGTTTAGACCC-CGCC-AC-TTAT-T-TAT--TATTA------TT----CATGAAAGAGCAA-C--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TTAAAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG--GA-CT-AA-T-AAAACTAA-TC-T-G-AA-CC-A----TT----------TGTC------------T-ACCGTA-------TTT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGC-TTTT---ATTGG----TAACGG--G---AAAG-GGGCCAG--CCACAAT--G-TTGTT--TC---AA-CT-CAct
gi|13 : CATTAAT--TGATGT-CACGTG-CTTTATAAAC-AGAGAAAGTA-G---GATATCTCTTCATATGTTGTCCTTTGTTTCTAGACCT-GTCC-AT-ATTGTT-TAC--CATTA------TT----CATGAAGGAA--------TTG--GA--------TGC----TAA-AG-AATTT-AAA--AATCAG--CCT--ACTTTTC-GGCATTCCATCTTG------------AC---AA---AG---AA-CT-AT-C-AAAACTAT-TCAT-AAAA-Cct
gi|14 : gaaaataaaatatatgtaatgattctaacgcaatttagaatttccTCCA--AAAATAATTCATGAAA--TAATGT-CATGTG-CTGTATAAAC-GGGGAAAGCACGAAAGAGGTCCATTGA-AGGTTGTCTTCTGTGTTTAGATCC-GTCC-AC-TTTGTT-TAT--TATTA------TTCATGCATGAAATAAT-A-C--CATAGCGAAAA---C-TGCTTGATAA-AATGG-TT-AAAT-ACCCAG--TTA--ATTTTTC-GGCATT---TCACGT-T-AC-GAAATAA---AA---AGA-TGA-TT-Aatc
gi|15 : CTGAATG-GTG-TTGTGTTTTCTTTC--------TGAACCATA--CTT-TTATT----CATTAT--ATGCATATTTTTGGTTCATTAT--TTTTCCTGCAA------TT-TAAT--TAACGTAAAAT-A--------------A--AAGACAT------ATGCGTATAGA-------GTA-----------------CACGTATTTTAC------------AGCATTGCATGTGC------------GTTTTCAAAGCTAAAAATGAATTAATAATAAGTGT-TTCTTCA-TAAAT--A-ATT-ATA--CCAGCCtagacagttttcag
gi|16 : ACATGTGTATACAG-TGTATATGG---ATTCTGAGAAAAGGA-A-GGG--------------TT-TCTAGGGGTTGGCCCCACCCCCCTCTTTCTCTGGGACATTTA---TGTAGTTTTT------AACATGCTCAAAAG--GTCTT-TG--T-TATAAATCTT-TAATGATTA--AAAG-ATT-AAC-TA------GCACTCAATG-GTG-ATGATCTGAGTTTC--------TCTACTAGA--ATT-TTAAA----CATTGC--ATGTGCA-------------caaaa
gi|17 : TGATATAATTTCT---TTCA-GC-GTCTGTATAA-------ATA--CCGAACTTGCTTTTTA--------T-AATT-AA-AGTTTTAAA--CGTGTTAAG-GTATTTAATAATGC-ATTA-TCACGACG---A--ATTT--AA-t
gi|18 : aagatttgtacagatttcTCTGGGACACCTA----GTA-----TGT-ATATAGATGT-CAAAAGTCGTTTTGTGGGCATA-------TGTA------ACGAAAG-ATTTAAC-TACATGTAGCACTGGATGTGTG-ATGG--TTTCTTTCATCTCTCCTGTACTAAAAACTTATTATGAGATCA--GCTTATGTACA-------------AT--TCTACCTG-AAAAATACCT-T--TCAT---------TGA--------------CTTCAGACTT------AC----------------GTA-----------------CAattagcattaaaaaaacccgatcacatacattatatgtattcagtgaaaaccatgcatactagtttccatttgataaaaaa
gi|19 : tA-G-AT-GAAAGACTCTAAGTGAGG-AGT-CT-AT-T-AAAACTAA-TC-TGGAGA-AC-A----CTGTCT-GTTGGTGTC------------TAA-AGTAT------TCT-AAT-ATTA-ACTTTCG-TG-CTTGACAACTA---A-TA-AGTATGC-TTTT---ACCGA----GAACGGCTG--AAAAG-GGGCCAG--AC-CAATG-G-TTGTT--TT---AATCT-CAaactata
gi|2 : tatttgttgtga--GTCTT-TG--C-T----------TA------G--CAAA-ATT-AAC-TA------GCACTGAATG-GTG-ATGGATTTTCTTTC--------TGAAATAAA--CTT-TTACG----CATTGC--ATGTACA-------------GGA-TTTACCTG-AA------CTAT--T--T---------T-A--------------C--AAGACTT------AC-------GA-------GTA-----------------CATATAT-----------------A----------T-----------------TTCAAAAATAAAAATC----AATAATCAATAT-TT---CATTA--TTC-----TATA--TGAGCCAAGA-TATTGT-CATATTTTGCAT--CAA-GACAA-T-------A-GATTAAGAAA---T-TA-------ACCCCCCCCCCCCAATA-AACCTGCT-CGAA-GTGT-G-CCCCAAG-CCGAGGAAAGGA-AAG-TTTTTTTTCGGGGGGGGGGGGGGAGGGTCCCGTCTTATTATTATTTAG-TACATTAT--GTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----ATCAGAGTTTGAACG-AAACGTATATTAATGGT-ATAACTTATTACAG--TTC-GCATA-TATATTTTCCATATTTGTGT-GGCTACGTA-TAGATCTATAACC-GAGTGTGCTTTTAT--------T-AA-TAAATAGTTGTAAAAGCGTTTTAG--ATATT------TGC-AATG-TCACTACG---AATAAAT--AA-CATGTATATTT-----CA-G---------TT--GAAAACTATAT-ATTGCTCTTATTAAAA--GGTCATGAA---TAATGTTCACGTT-CTTTGTAATC-GGGAGAAGCA-GCACGAGGTCAGTTTA-ATGTTGCCTTTTGTG---ATACCG-C-CC-AC-TTTA-T-T-T--TATT-------TT----CATGAA-GAGC-AAC--CCTGGCGAAAA---C-TGCTTGATAA-AG-GG-TT-AAAGAATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-G-AAAAC---AA---AGA-GAA-CTAAA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTCT-G-TGGTGTC------------T-A-AGT--------TAT-AAT-TTTA-ACTTTCG-TA-C------ACT----A-TA-A-T-TGCTTTTT---ATTAG----CAACGG--G--AAAAG-GGGCTAA--CCACAATGTG-TTGTT--T----AA-CT-CATat
gi|20 : aAG--ATTCAG--CAA--ATTGTTC-GGCATT---TCTTGA-G-AT-GAAAAAC---AA---AGG-AGA-CT-AA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAACGG--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATC
gi|21 : AG--ATTCAG--CAA--ATTGTT--GGCATT---TCTTGAGG-AT-GAAAAAC---AA---AGG-AGA-CT-AA-T-AAAACTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-AGTA-------TAT-AAT-TTTA-ACTTTTGTTA-C------ATT----G-TA-A-T-TGC-TTTT---ACTGG----CAAC-G--G--AAAAG-GGGCAAG--GCACAATG-G-TTGTT--TA---AA-CT-CATCctt
gi|22 : cTCAGTGTTTGAACG-AAACATATGTTGATGATT---A------ACGGATTTCTGTATct
gi|23 : tgtgacctatattgtatattatatattatacT---TCTCGA-------AAAAAT---AA---TCG-GAA-CT-AT-T-TAAAGTA--TC-T-AAAA-ATGA----TGGTCT-A-TAGCGTG------------T-A-CATA-------TAA-AAT-TTTA-ACTTTTG-TT-C------AGT----A--G-A-TATGC-TTTG---GTTGA----CCACGG--A--AAAAC-GGA-TAGAATC-CAATC-G-TTATT--TC---AC-TT-CATCttatttgagaaaacccccacaaacctattagattaagaaataaaatttgtaccgatttctggtttttttggggtttttttccagtagt
gi|24 : C---AA---AGG-AGA-CT-TC-T-GAACCTAT-TC-A-GTAA-CC-A----TTGTCTTG-TAGTGCC------------A-A-AGTACAATGTATAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-T-TGC-TTGT---ATTGG----CAACGG--G--AAAAG-GGGTCAG--CTACAACA-T-ATGTT--TT---AA-CT-CATCct
gi|25 : GGAAATCACGCACGAGGTCCATTTA--------------TATTTAGACCC-GCCC-AT-TTTG-TTTATTATACTGC-----TT----TATAAA--------C--TATATTTAAAA---TATACCTC-----------TC-AAA--ATTCAG--T-----TTTTTC-CACATT---TCTCGA-G-AC-GAAAAA-------------------------AAAACTAA-TC-T-GAAA-ctt
gi|27 : GAGGTGGTTCAGGGGTTGG----ATCCCC-T--TTCTTTGGAACAC-------------TTTTT-AAAA---TG------AG----CTT-TG--C-TA-------T-TA------A--AAAG-AGT-AACTTA------GCACTGAATG-GTG-ATG
gi|28 : tcatggattttcaggtaaaggtattcgaaaatttcATTAGGATTTCAACG-AAACGTATGCTGACGG---TAA------AGGA--TTCAGCAT-ATAT--TATCCGT-CTAA-GT-G-C-ATGTAat
gi|29 : ataATTAGGGTTTGAACA-AAACATATGCTGATGATT---A------ATAG--TTCTACTTAATGTctaagtattcaaatagcagtaagctttatactgatttctaatttcattttt
gi|3 : tatgctgggcacttgtgacatatattttgtacataataatataTATTCGACATGCATGTACATGTACA-GTATATATA--TGCAT-TGGCGAATTCCGAGAGAGAGAGA-GAGAGAAGGGGGGGGGGTG-TCCAGGGGTTGG----ATCCCCTT--TTCCCTGGGTCACCTA---TGTAG--TTTTT-AACAACATTTTCAAAAG--GTCTT-TG--C-TA-------T---------A--AAAG-ATT-AAC-TA------GCACTGAATG-GTACCCGGGTATTCTTTT--------TGTACT-AA--CTT-TTACA----CATAAC--ATGAACA-------------ATTATTTACTTG-A--------T-T--T-----------------------------C--AAAACTT------AC-------GA-------GTACATATAGTATACATGTACATGCATTTT-CGCTGCATTGCACA----------TGC------------TTTTTCAAAAATAAAAATG----AATAATCAGTATCTT-TTC-----ATTCATATttgaagtactatt
gi|30 : ggctatgtgccgcggcccgtagtatattttttcccgtttcatgctagaatttacatggttcaattcatcatttgtacttttatgatttcaatgctacatggtgcattcattcactacagtctgagtttcagcttggggtttcctcattaactgaaattctcataggcatttggccccgtccacactatcatattatattcgagagaaggtacggttaaataatccaggctgtgtttgtatattattgaaaacttttaaattttgcacagcaatagccgtacgttacagtgtacatcgctgatattttacaatataaatcggaaagaatttcactagaacctctccattattgaactccataacctacctgaaataaaaggttaaatcacgtgatcctattgcattgtccgctgtttttgtaacataaactcgacttcaccatcatgaattttaattaagagtcATCTATAACC-GATTGTGCTTTTGATACACATGT-AACTAAA-A-TTGTAAA--CGTGTTCAG-GTGCT------AGC-AGTG-TCGCTACGA--A-TTTAT--AA-CATGT----
gi|31 : t-AT-GAAAATG---GA---AGGCAGA-C--AA-T-AAA-CTAT-TC-G-AGAA-TC-A----TTGTCT-G-TGGTGTT----------------ATTA-------TATCAAT-TTTA-ACTTTTG-TA-C------A-T----A-TA-A-T-Ta
gi|32 : atTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATCag
gi|33 : acTA-------TAT-AAT-TTTACACT--CG-TA-C------ACT----AATA-A-T-TGC-TTTT---ATTAG----CAACGG--G--ACCAGAGGGCCAG--CCACAATG-G-TTATT--TC----A-CT-CATCct
gi|34 : acA-ACTTTTG-TA-C------AATTGATA-TG-A-T-TAC-TTTTCTTATTGA----CAACAG--G--AAAAG-GGGCCAG--CTCCATCA-G-TCGTT--TT---AA-AT-CAct
gi|35 : AGTGC-GGCCCCAAGGCTGAGAAAAGGACAGG-TTTTTTTTacct
gi|36 : -A-T-TGC-TTTC---ATTGG----CAACTG--G--AAAAG-GGACAAG--CTTCAATA-G-TTCTT--TG---AG-TT-CATCtattttgtgagcataatccaattgtgacatatatat
gi|37 : tacaatAAATTAA-TC-T-GAAA-CC-A----TTGTTT-G-TGGTGTC------------T-A-CGTA-------TAT-AAT-TTTA-ACTTTTG-TA-C------AAT----A-TA-A-ctt
gi|4 : CTTTC--------TGTACTAAA--CTT-TTACG----CATACC--ACGTACA--------------T--TCTACCTG-AA------AT-T--T--A---------T-AAGCCTAAAAGATTTC--AAGACTTGGCAATACATA----GATGCACATGTA-----------------CATGTATTTT-C------------AC---------TGCATCGCAAGTGCTTTTTTCAAAAAT-AAAATG----AATAATCGATGTCTT-TTCG-TA----CATGATTATA--CAAGCCCAGATTTTTGT-CATATTT-TGATTACGAAAATAA-TTTAAAAAT-GATTTAAAAACTGTCTANNNNNNNNNNNNNNNNNNNNNNNNNAACCTG--TCTAAAATGTGG-CCCCGAGCCCGAAAAAATGA-ACGATTTTTTTT
gi|4 : ATCAGGGTTTGAACG-AAACGTATGC--AAAGTT---A------ACAG--TTCCGC---ATATAATTTCCGTATTTA-GT-atttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataatcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|40 : ctttctgtactaaacttttacgcataccacgtacattctacctgaaatttataagcctaaaagatttcaagacttggcaatacatagatgcacatgtacatgtattttcactgcatcgcaagtgcttttttcaaaaataaaatgaataatcgatgtcttttcgtacatgattatacaagcccagatttttgtcatattttgattacgaaaataatttaaaaatgatttaaaaactgtctannnnnnnnnnnnnnnnnnnnnnnnnaacctgtctaaaatgtggccccgagcccgaaaaaatgaacgattttttttatttttgtgagcatatgccatttgtgacataattatatttggtacattatagtataGTTTTGTT-AAAAATATGTTCAAATG--ATCTT-TG--C-TA-------T-TA------A--AAAATATT-AACTTA------GCACTGtgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttca
gi|44 : CATCTA---CGTAGTTTTT------AACGTGTTCAAAAA--GTTTT-TG--T-TA-------
gi|5 : AATCAGTAT-TG-TTCATTAAATTCATATTCATAAACGAGCCA-GA-TATTGT-CATATTT-GCAT--CAATGGCTA-T-------T-GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCAAATACAACCTGCTTCGAAAGTGT-G-CCGCCAG-CCGAGGAAAGGA-AAG-TTTTTTTTC-------GGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACGTAT--TGATGGTTATAACTTATTACAG---TCCGCATAATAATATTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAA--------TAAACTAAA-AGTTGTAAAAGCGTTTTAAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT----TA-----CA-C---------TC--GTACACTA-ATAATTGCTTTTATTA
gi|6 : AATCAGTAT-TG-TTCATTAAATTCATATTCATAAACGAGCCA-GA-TATTGT-CATATTT-GCAT--CAATGGCTA-T-------T-GATTAAGAAA--GT-TA-TAAAGCAACCCCGCCCCCAAATACAACCTGCTTCGAAAGTGT-G-CCGCCAG-CCGAGGAAAGGA-AAG-TTTTTTTTC-------GGGGGGGGGGGTCCCGTCTTATTGTTATTTAGGTACATTATAAGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAAAACGTAT--TGATGGTTATAACTTATTACAG---TCCGCATAATAATATTTCCATATTTA-GTGG-CTACGTAATGGATCTATAACGCGAGTGTGC-TTTAA--------TAAACTAAA-AGTTGTAAAAGCGTTTTAAGCATATT------TGCAAATG-TCACT------A-TATA-------ATTT----TA-----CA-C---------TC--GTACACTA-ATAATTGCTTTTATTA
gi|7 : TCAGGGTTTGAACG-AAACGTATGC--AAAGTT---A------ACAG--TTCCGC---ATATAATTTCCGTATTTA-GT-
gi|7 : CCGAATGTGCTTTTGA--------T-AATTAAA-AGCTGTATACGTGTTT-AA--ATATT----------AA-A-TTA--ACA---G-TATATGCAA-CATAT----TTATT--CATG---------T---GGAAATCATGC-ATTGCTTCCATTAAAAAAAGTCATGGAA--TAATGT-CCCGTA-CTTTGTAA-C-TGGGAAAGCTCGCAAGAGGTCCATTGA-ATGCTGTCCTTTG-GTTTAGACCCGCCCC-AA-TTTGTT-TAT--TATTA------TT----CAT------------------GCAAAAA---C-TGCTTGATAA-AG-GG-TTCAAT--ATTCAA--TTA--ATTTTTC-GGCCTT---TCTCGA-G-AA-GAAAAAC---AG---AG---GA-CT-AT-G-AAAACTCT-TC-A-GAAA-CC-A----TTGCCT-G-TGGTGAC------------T-A-AGTA-------TAtgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtccgaatgtgcttttgataattaaaagctgtatacgtgtttaaatattaaattaacagtatatgcaacatatttattcatgtggaaatcatgcattgcttccattaaaaaaagtcatggaataatgtcccgtactttgtaactgggaaagctcgcaagaggtccattgaatgctgtcctttggtttagacccgccccaatttgtttattattattcatgcaaaaactgcttgataaagggttcaatattcaattaatttttcggcctttctcgagaagaaaaacagaggactatgaaaactcttcagaaaccattgcctgtggtgactaagtata
gi|8 : tcagggtttgaacgaaacgtatgcaaagttaacagttccgcatataatttccgtatttagttgggaaaaaatattagattaagaaataaaatttgtactgatttctgattcatttttttttcagtggtGTATA-GTATGTACAGCTACAT--GGCGGAATCT----CAAAGA-ACAGGAAAATGGGGGG---------AGGGGTTGG----ATC
gi|9 : taggtctgagtttagcttggtgttcctcagaaattggagatcctataggcatttggtcccgcccaatatatgatacaatctagaaacgtgtgtctcgacagaaggttatgggtttaaataattagagcatttttatatataattgaaaacttccattttcgtatagagaaaccgtacatattcataatccaataagaaaatatcagcaaaatgtcagtaaacctctctattaatggaaacctgtttttgtactcattgacctatctgaataagcttggtgttaggcaaaagtatatcaacgtgatacgaagcacttgtccatcttttagacatgattacgctttcagacgtcacagactttaagacaagtgtatttggagtaatgttggctgaATT------TGC-AATGGTCACTACGGACA-TAAAT--AAGCATGT----GTATATGCA-GCAAATATTATCAGGTTAACTATGT-ATTTGTTCCATATAAGAAGGTCATGAAAAATAAAGT-CACGTTTCTTTGTAAGCCGGGGAAAGCACGCACGAGGT-------------GT---TTGTGTTTAGACGC-CGCCCACAGTTG-T-T----TATTAAAATATTT----CATGAAAGAAC-A-GAGCCTGGCGAAAAACCT-TGCTTGATAATAG-GGCTT-AAG--ATTCAGAACAAGAATT--TCAGGCATT---TCTTGA-GAAC-GAAAAA----AA---AGG-AGACCT-AC-TGAAAATTAATTC-T-GAAATCC-GCACTCTGTCT-G-T-ATGTCCGCTTCTGATGTT-A-A-TC-------TAT-ACTATATA-ACTTTCGATAGC------ACT----A-TAGA-T-AGC--TTT---ATTGGATAATAGCGA--GATAAAAG-GGGCCAG--CTACTATA-GTTTGTTGATCCATAA-CTACATC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTTGTTAATTGATGACAAACATAATCTTTCATGAAGAATTATCAATCCTTGATGTTTATAATCAAATTCTATTAAAAAATAACAAATCTAAACCTGCCCGAAGCTAGTGTAATCCAAAGCGCGAGAATATATACTTTATTTTTGTGAGCACAATCCATTTGTGACATGTTTAATACATTTATAGTATCTCGGTTTGAACCAAACGTGCATATAATTTCGGTATTTAATTGAATACACTCTATTTGATTAAATTTAAAAATTGTACTGATTTTTTTTTCCAG
Unaligned ( gi|26 ): GCATATGCAGCATTTACATTCAGTGAATATCACACATTTATTTCTCCATTCATAGAAAAAGAAATAATGATAATGGCACGTGCTTTGACAACAAGGAAAACATCAAACCAATTCATATCCGAAATTGAATGTTGTCCT
Unaligned ( gi|38 ): CCCCCCCCCCCCCCCGGTTACGGCCTTGTATGCTATACATATGTTATGCGAAAGGGAAGGGGG
Unaligned ( gi|39 ): TATGTCTCTGCTGTAATCAACTAGCGTAAGGGTGACTGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|41 ): TGCTGTAATCAATAGCGTAAGGGTGACTGGCATGCCCCCCCCCTCTTTTTT
Unaligned ( gi|42 ): CTATGGGTGTATATGTATATATTATGGGTATAGAAGATTCGGTTTT
Unaligned ( gi|43 ): ATACTTTTCATAGGATATTTTAATATTTTGTGCCAGGTACAT