lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 11 11111 11 11 11 5555555 1 111111 999999999999999999999999999999999999999999999999999999999 111 111 1 111 6666666666666 1 1 111111 2222 11
lowQualScore : 77 3 3 555 55555 7 7 3 7 7777 3 33 999 8 3 44 99999 55 888 7 2222 55 11 4 4 4 66 8 55555 66 44 4 88888888888888888 55 66 2 22 8 8 2 33 6 6666666 1 333333 5 555555555555555555555555555555555555555555555555555555555 66 777 555 2 6 0 5 000 2222222222222 5 3 5 1 5 1 666666 5 2 77 4444 6 77
lowQualScore : .. . . ... ..... . . . . .... . .. ... . . .. ..... .. ... . .... .. .. . . . .. . ..... .. .. . ................. .. .. . .. . . . .. . ....... . ...... . ......................................................... .. ... ... . . . . ... ............. . . . . . . ...... . . .. .... . ..
lowQualScore : 33 1 1 444 99999 3 3 6 3 7777 6 99 555 5 6 22 11111 00 777 3 5555 55 00 9 4 4 11 1 88888 11 66 0 99999999999999999 00 11 3 22 9 9 8 88 0 9999999 4 666666 7 111111111111111111111111111111111111111111111111111111111 99 999 999 0 0 1 0 000 9999999999999 0 7 7 4 7 4 444444 7 7 99 3333 0 55
consensus : GTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATGAAAAG-A-----CACCAATA--A-G-TT-ACAAT----TAT--A--ACAATTTGAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAANCCTCTTTATGTT--GTGG-CCTCT-AATTCAAGTT--TAGAAGCTTTATACAAAAATT-T---ACCAAAA-TTA----C-ATATAG-CA-C-----------TAG---TA-TT--------AGA-A--AGTTG-T---AA------A--AT---TTA-T-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATGTACAATTTT-CTTAGTT-TTTCATATGCAG-GA-CAAA------TAAATA-TNAA--A----TGATATTCGTCTTC-AATATCTCC
Reference ( gi|4 ) : GTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--GATGAC-ATCAATGAAAAA-A-----CACCAATA--A-A-TT-ACAAT----TAT--A--ACAATTTAAGATTAC-GAAACA-G--AGTATGCATG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAAAAGCTTTATACAAAAAAAAT---ACCAAAA-TTA----C-ATATAA-CA-C-----------TAG---TA-C----------------AGTTG-T-----------A--AT---TTA-T-ACATTGGCGGTTTTTCATA---ATAA-------------TATTTACCAATGTACAATTTT-CTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TAATATTCGTCTTC-CATATCTCC
gi|2 : GTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATAAAAAA-AAAACACACCAATG--A-A-TT-ACAAG----TAT--A--ACAATT-AAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TAATATATATTTTAT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATACAAAAATTAT---A--AAAA-ATA----C-ATATAA-CA-TGTATTTGTAT-TAGA--TAAT----------------AGCTG-TTACAAGTAATAA--AT---TTA-T-ACATTGACGG-TTTTCATAATTATAA-------------TATT--CCAATGTACAATTTT-CTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTC-ATTATCTCC
gi|3 : tattGTATTGTTTATTTCCAAAA--G-CAATATTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AA-AAC-ATCAATAAAATA-A-----C--CAATA--A-AAGT-ACAAT----TATTAA--ACAATTTAA-ATTAC-GAAACA-G--AGTA-GC-TG--AA-TG--TAAA-TA-TATA-------------------A--ATA--TTGAGGATAAACCTCTTTATGTT---TGG-CCTC--AATT-AAGTT--TAGAAGCTTTATACAAAAATT-T---ACCAAAA-TTA----C-ATATAAACA-CAGATTTTGTATTAGAAATA-C----------------TGTTAAT-----------A--AT---TTA-T-ACAT-GACG-TTTATCATA---ATAA-------------T-TTTATCAATGTACAATTTT-CTTAGTT-TTTCATATACAGTGA-CAAAATATATTAAA-A-TATA--A----TGATATTCGTCTTCACATATCatat
gi|10 : attGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATTAATGAAAAA-A-----CACCAATA--A-A-TT-ACAAT----TAT--A--ACAATTTAAGATTAC-GAAACA-G--AGTATGCGTGGTA--TG--TAAA-TA-TATATATAT-CT--ACTT--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGctaattatg
gi|8 : attGTATTGTTTATTTACGAAA--G-CAATACTG-CT---TATAGGATA---C-A-AAAAGAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATCAAAAG-A-----CACCAATA--A-G-TT-ACAAT----TAT--A--ACAATTTGTGAATAC-AAAACA-C--AGTATGCATG--A--TG--TAAA-GA---------T-AT--A--T--ATAA--ATA--TTGAGGATAACCCTCTCTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATTT---ACTAAAA-TTACATGC-ATATAA-CA-T-----------TAG---TA-T------------------TTG-T-----------A--
gi|17 : ttGTATTGTTTATTTTCAAAAA-G-CAATACTG-TT---TATAGGATA---T-A-AAA-GAAAC-AT-ATGTT----A-CA-AT--AATAAC-ATCAATGAAAAG-A-----CACCAATA--A-A-TT-ACAAT----TGT--A--ACAATTTAAGttag
gi|20 : gtattGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGGTA---
gi|11 : tgtattGTATTATTTATTTCCAACA--G-CAGTACTG-TT---TATAGGTTA---C-A-AA---GAAC-AT-ATATT----A-AA-TT--GATGAT-ATACATAAGAAATA-----CATGGTTA--ACG-CT-AT-GT----AAC--A--ACAATTTG----TA--AACATA-A--AGCACGCGCG--C--GGCTCAAATTA-TATGTACAT-AA--A--TTCATCA--ACACGTTGAGGATAAATC-----A---T--GTGA-CCTCT-GATT
gi|1 : gtattTGTTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAAAGAAAC-AT-ATATT----G-CA-AT--AATAAC-ATCATTGAAAAG-A-----CACCAATA--A-G-TT-ACAA
gi|5 : cttgactggggtttatttctcggagcatacattttcctgtacattaaaattcattctaaatgacaaattgtacagattatcaagtatattcctagaaatttagtctaacacttaattcactccaattaacgatcatattcttggcagatcacaaacaaaactgctctgaactatggtcaaaagtaggtcggtacaggtgagaaaccaagccattatcattgtcattgctagttgagtctagtaaagcctcctaaattttattttatttcaaatgatttaaaaatacacaaaaaagaaacagtacttttatgttgttgtTATTTATTTCCAAAA-----AATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ACATT----A-CATAT--AA-----ATCAATGAAAAG-A-----CACCAATA--A-A-TT-ACAAT----TAT--A--AACATTTAAGATTAC-GAAACA-G--AGTATGCGTG---------TAAA-TA-TATATATTT-ATTTA--T--ATAATAATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATACAAAAATT-T---ACCAAAT-TTA----C-ATATAA-C--C-----------TAG---TA-TTTGTATTAGAAAT---AGCTG-T-----------ATAAT---TTA-T-ACATTGACGGTTTTTCATA---ATAA-------------T--TTATCAATGTACAATTTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATATTAAA--A----TGATATTC
gi|21 : ttttaTTTATTTCCAAAA--G-CAATACTG-CT---TATAG
gi|14 : TTATTTCTAAAA--G-TGGTACTG-CT---TATAGGATA---C-ATAAA-GACAC-AT-ATATT----A-CA-TT--AATAAC-ATCAACGAAAAG-A-----CACCAATA--A-G-TT-ACAAT----TAT--ATTACAATTTGAGAATAC-GAAACA-G--AGTATACGTG--A--TG--TAAA-GA-TATA
gi|12 : TTATTTCTAAAA--GTCGGTACTGGCT---TATAGGATA---CCATAAA-GACAC-ATTATATTTAGCA-CT-TT--AAT-AC-A-CAACGAAAAG-A-----CACCAATACAA-G-TTGACAATC---TAT--ATTACAATGTGAGAT-AC-GAAACA-GGGAGTATACGTG--A--TG--TAAA-GA-TATAa
gi|13 : atcgtattctggcaTATTTCTAAAATCG-CG-TACTG-CTCTATATGTGATACCAT-A-ATA-GACACTATTATATT----AGCA-CTTTAATAACTAT-AACGAAAAG-A-----CACCAATA--A-AGTTGACAATCTCATAT--T--ACAATGTGAGA-TACTGAAACAGG--AGTATACGTG--ATCTG--TAAA-GA-TATA
gi|9 : A-TG-TATAAATT--AT--A--T--CTAA--ATA--TTTAGGATAATCATCTTTATGTT--GTGG-CCTCT-AATTCAAGTT--TAGAAGCTTTATACAAAA----TTTTACCAAAA-TTA----C-ATATAG-CA-A-----------TAG---TA-TTTGTAATTAGAGAAT-AGTGG-T-----------A--ATAATTTA-G-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATATACAATTTT-CTTAGTT-TTTCATATGCAG-GA-CAAA------TAAATA-TGAATTA----TGATATTCGTCTTC-AATATCTCaca
gi|7 : tgatcTT-AT--A--T--CTAAT-ATG--TTAGCGATAATCATCTTTATGTTCTGTGGGCCTCTTAATTCAAGTTGGTTGAAGCTTTATACAAGAATT-T---ACCAAAAATTA----CCATATAG-CAAC-----------TAG---TA-TTGTGTAATTAGAGAATAGTCG-TGGTAAT-----A--AT---TTA-CGACAT-GACGGTTTT-CATA---ATAGAAAAAAAAATAACTATGTATCAATATACAATTTT-CTTAGTTGTTTCATATGCAG-GACCAAA------TAAATA-TTGA--ATGATTGATATTCGTCTTC-AATATCTCtatatg
gi|6 : aTT-AT--A--T--CTAAT-ATG--TTAGCGATAATCATCTTTATGTTCTGTGGGCCTCTTAATTCAAGTTGGTTGAAGCTTTATACAAGAATT-T---ACCAAAAATTA----CCATATAG-CAAC-----------TAG---TA-TTGTGTAATTAGAGAATAGTCG-TGGTAAT-----A--AT---TTA-CGACAT-GACGGTTTT-CATA---ATAGAAAAAAAAATAACTATGTATCAATATACAATTTT-CTTAGTTGTTTCATATGCAG-GACCAAA------TAAATA-TTGA--ATGATTGATATTCGTCTTC-AATATCTCtata
gi|15 : aAG---AA-T----------------AGCTG-T-----------A--ATAA-TTAAT-ACATTGACGGCTTTTCATA---ATAG-------------TATTTATCAATGTACAATTTT-CTTAGTT-TTTTATATACAG-GA-CAAA------TAAATA-TGAA--A----TGATATTCGTCTTC-AATATCTCtata
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ACTAAAAACTCTAAGGATTTCGTGAAATCACAGGAAAGGTGGCATGGTAATTTTACGAAATCACTGACTGGGATTTATTTCTTGGAGCATATATTTTCCTGTACATTAAAATTCATTCTAAA
Unaligned ( gi|18 ): ACAAGCAGAAATGATCAACCCACTATTATGCAATTATCCAATATAACCTGCTAGCTACAGTTTTTCTAACAAGTATTTGAAAATAAAATTTTCGATACGGCTTATATGC
Unaligned ( gi|19 ): TCTAAAAGTATTTGAAAATGAAAATTTTCGATACTGGTATATGATCGTTATG
Alignments
lowQualScore : 1111 11 11111 11 11 11 1 2222 3333333333333333 9999999999999999999999999999999999999 1 1 55555555555555 1 1 111111 2222
lowQualScore : 66 2 2 555 555 3 6 6 3 6 7777 3 3 44 3 3 88888 3 44 77 6 1111 55 00 3 4 4 55 33333 55 3 3 3 1 4 55 55 666 33 55 1 11 8 8 4 22 5 5 0 0000 5 0000000000000000 8888888888888888888888888888888888888 0 9 1 888 77777777777777 5 0 5 0 444444 5 1 66 1111 5
lowQualScore : .. . . ... ... . . . . . .... . . .. . . ..... . .. .. . .... .. .. . . . .. ..... .. . . . . . .. .. ... .. .. . .. . . . .. . . . .... . ................ ..................................... . . . ... .............. . . . . ...... . . .. .... .
lowQualScore : 88 9 9 000 444 3 7 7 3 7 1111 3 3 66 3 3 33333 3 66 99 7 4444 00 00 5 0 0 55 33333 55 6 6 4 0 0 55 55 111 55 55 0 00 0 0 4 22 0 0 0 6666 0 1111111111111111 9999999999999999999999999999999999999 0 4 2 888 22222222222222 0 0 0 0 444444 0 0 99 2222 7
consensus : GTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAAATTAC---CATAT-AAC-AC-----TA------GTATT----------AGA-AT-A-----GTC----G-TAAT-AATTTAT-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTCA-ATATCTCC
Reference ( family-2203 ) : GTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAANCCTCTTTATGTT--GTGG-CCTCT-AATTCAAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAAATTA----CATAT-AGC-AC-----TA------GTATT----------AGA-A--A-----GTT----G-TAA--AATTTAT-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATGCAG-GA-CAAA------TAAATA-TNAA--A----TGATATTCGTCTTCA-ATATCTCC
gi|1 : TGTTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAAAGAAAC-AT-ATATT----G-CA-AT--AATAAC-ATCATTGA-AAAGA-----CACCAAT-A--A--GTT-ACAA
gi|10 : cttgactggggtttatttctcggagcatacattttcctgtacattaaaattcattctaaatgacaaattgtacagattatcaagtatattcctagaaatttagtctaacacttaattcactccaattaacgatcatattcttggcagatcacaaacaaaactgctctgaactatggtcaaaagtaggtcggtacaggtgagaaaccaagccattatcattgtcattgctagttgagtctagtaaagcctcctaaattttattttatttcaaatgatttaaaaatacacaaaaaagaaacagtacttttatgttgttgtGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATTAATGA-AAAAA-----CACCAAT-A--A--ATT-ACAAT----TAT--A--ACAATTTAAGATTAC-GAAACA-G--AGTATGCGTGGTA--TG--TAAA-TA-TATATATAT-CT--ACTT--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAG
gi|11 : attGTATTATTTATTTCCAACA--G-CAGTACTG-TT---TATAGGTTA---C-A-AA---GAAC-AT-ATATT----A-AA-TT--GATGAT-ATACATAAGAAATA-----CATGGTT-A--AC-GCT-AT-GT----AAC--A--ACAATTTG----TA--AACATA-A--AGCACGCGCG--C--GGCTCAAATTA-TATGTACAT-AA--A--TTCATCA--ACACGTTGAGGATAAATC-----A---T--GTGA-CCTCT-GATT
gi|12 : gtattTTATTTCTAAAA--GTCGGTACTGGCT---TATAGGATA---CCATAAA-GACAC-ATTATATTTAGCA-CT-TT--AATA-C-A-CAACGA-AAAGA-----CACCAAT-ACAA--GTTGACAATC---TAT--ATTACAATGTGAGAT-AC-GAAACA-GGGAGTATACGTG--A--TG--TAAA-GA-TATA
gi|13 : atcgtattctggcaTATTTCTAAAATCG-CG-TACTG-CTCTATATGTGATACCAT-A-ATA-GACACTATTATATT----AGCA-CTTTAATAACTAT-AACGA-AAAGA-----CACCAATAA--A--GTTGACAATCTCATAT--T--ACAATGTGAGA-TACTGAAACAGG--AGTATACGTG--ATCTG--TAAA-GA-TATA
gi|14 : TTATTTCTAAAA--G-TGGTACTG-CT---TATAGGATA---C-ATAAA-GACAC-AT-ATATT----A-CA-TT--AATAAC-ATCAACGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--ATTACAATTTGAGAATAC-GAAACA-G--AGTATACGTG--A--TG--TAAA-GA-TATAaca
gi|15 : ----------AGA-AT-A-----GCT----G-TAAT-AATTAAT-ACATTGACGGCTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTTATATACAG-GA-CAAA------TAAATA-TGAA--A----TGATATTCGTCTTCA-ATATCTCa
gi|17 : GTATTGTTTATTTTCAAAAA-G-CAATACTG-TT---TATAGGATA---T-A-AAA-GAAAC-AT-ATGTT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--ATT-ACAAT----TGT--A--ACAATTTAAGtata
gi|2 : gtattGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATAA-AAAAAAAACACACCAAT-G--A--ATT-ACAAG----TAT--A--ACAATT-AAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TAATATATATTTTAT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATTATA---AAAAATA----CATAT-AAC-ATG----TATTT---GTATT----------AGATA--ATAGCTGTTACAAG-TAATAAATTTAT-ACATTGACGG-TTTTCATAATTATAA-------------TATT--CCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTCA-TTATCTCC
gi|20 : tattGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGGTA---atat
gi|21 : tgtattTTTATTTCCAAAA--G-CAATACTG-CT---TATAG
gi|3 : GTATTGTTTATTTCCAAAA--G-CAATATTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AA-AAC-ATCAAT-A-AAATA------ACCAAT-A--AAAGT--ACAAT----TATTAA--ACAATTTAA-ATTAC-GAAACA-G--AGTA-GC-TG--AA-TG--TAAA-TA-TATA-------------------A--ATA--TTGAGGATAAACCTCTTTATGTT---TGG-CCTC--AATT-AAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAAATTA----CATATAAAC-ACAGATTTT------GTATT----------AGA-A--AT----ACT----GTTAAT-AATTTAT-ACA-TGAC-GTTTATCATA---ATAA-------------T-TTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATACAGTGA-CAAAATATATTAAA-A-TATA--A----TGATATTCGTCTTCACATATC
gi|4 : attGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--GATGAC-ATCAATGA-AAAAA-----CACCAAT-A--A--ATT-ACAAT----TAT--A--ACAATTTAAGATTAC-GAAACA-G--AGTATGCATG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAAAAGCTTTATACAAAAAAAA-TACC-AAAATTA----CATAT-AAC-AC-----TA------GTAC------------------A-----GTT----G-T----AATTTAT-ACATTGGCGGTTTTTCATA---ATAA-------------TATTTACCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TAATATTCGTCTTCC-ATATCTCCctaattatg
gi|5 : TATTTATTTCCAAAA-----AATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ACATT----A-CATAT--AA-----ATCAATGA-AAAGA-----CACCAAT-A--A--ATT-ACAAT----TAT--A--AACATTTAAGATTAC-GAAACA-G--AGTATGCGTG---------TAAA-TA-TATATATTT-ATTTA--T--ATAATAATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAATTTA----CATAT-AAC--C-----TAGTATTTGTATT----------AGA-AATA-----GCT----G-TAT--AATTTAT-ACATTGACGGTTTTTCATA---ATA---------------ATTTATCAATGTACAATTTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATATTAAA--A----TGATATTC
gi|6 : ttttaTT-AT--A--T--CTAAT-ATG--TTAGCGATAATCATCTTTATGTTCTGTGGGCCTCTTAATTCAAGTTGGTTGAAGCTTTATAC-AAGAATT-TACCAAAAATTAC---CATAT-AGCAAC-----TA------GTATTGTGTAATTAGAGA-AT-A-----GTCGTG-G-TAAT-AATTTACGACA-TGACGG-TTTTCATA---ATAGAAAAAAAAATAACTATGTATCAATATACAA-TTTTCTTAGTTGTTTCATATGCAG-GACCAAA------TAAATA-TTGA--ATGATTGATATTCGTCTTCA-ATATCTC
gi|7 : aTT-AT--A--T--CTAAT-ATG--TTAGCGATAATCATCTTTATGTTCTGTGGGCCTCTTAATTCAAGTTGGTTGAAGCTTTATAC-AAGAATT-TACCAAAAATTAC---CATAT-AGCAAC-----TA------GTATTGTGTAATTAGAGA-AT-A-----GTCGTG-G-TAAT-AATTTACGACA-TGACGG-TTTTCATA---ATAGAAAAAAAAATAACTATGTATCAATATACAA-TTTTCTTAGTTGTTTCATATGCAG-GACCAAA------TAAATA-TTGA--ATGATTGATATTCGTCTTCA-ATATCTCtata
gi|8 : aGTATTGTTTATTTACGAAA--G-CAATACTG-CT---TATAGGATA---C-A-AAAAGAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATCA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGTGAATAC-AAAACA-C--AGTATGCATG--A--TG--TAAA-GA---------T-AT--A--T--ATAA--ATA--TTGAGGATAACCCTCTCTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACT-AAAATTACATGCATAT-AAC-AT-----TA------GTATT----------tata
gi|9 : ttA-TG-TATAAATT--AT--A--T--CTAA--ATA--TTTAGGATAATCATCTTTATGTT--GTGG-CCTCT-AATTCAAGTT--TAGAAGCTTTATAC-AAAATTT-TACC-AAAATTA----CATAT-AGC-AA-----TA------GTATTTGTAATTAG-AGA-AT-A-----GTG----G-TAAT-AATTTAG-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATATACAA-TTTTCTTAGTT-TTTCATATGCAG-GA-CAAA------TAAATA-TGAATTA----TGATATTCGTCTTCA-ATATCTCtgtattag
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACTAAAAACTCTAAGGATTTCGTGAAATCACAGGAAAGGTGGCATGGTAATTTTACGAAATCACTGACTGGGATTTATTTCTTGGAGCATATATTTTCCTGTACATTAAAATTCATTCTAAA
Unaligned ( gi|18 ): ACAAGCAGAAATGATCAACCCACTATTATGCAATTATCCAATATAACCTGCTAGCTACAGTTTTTCTAACAAGTATTTGAAAATAAAATTTTCGATACGGCTTATATGC
Unaligned ( gi|19 ): TCTAAAAGTATTTGAAAATGAAAATTTTCGATACTGGTATATGATCGTTATG
Alignments
lowQualScore : 1111 11 11111 11 11 11 1 22222 3333333333333333 5555555555 1111 22222222222222 1 1 55555555555555 1 1 111111 2222
lowQualScore : 66 2 2 555 555 3 6 6 3 6 7777 3 3 44 3 3 88888 3 44 77 6 1111 55 00 3 4 4 55 33333 55 3 3 3 1 4 55 55 666 33 55 1 11 8 8 1 22 5 5 0 00000 5 0000000000000000 6666666666 0000 88888888888888 5 0 9 1 888 77777777777777 5 0 5 0 444444 5 1 66 1111 5
lowQualScore : .. . . ... ... . . . . . .... . . .. . . ..... . .. .. . .... .. .. . . . .. ..... .. . . . . . .. .. ... .. .. . .. . . . .. . . . ..... . ................ .......... .... .............. . . . . ... .............. . . . . ...... . . .. .... .
lowQualScore : 88 9 9 000 444 3 7 7 3 7 1111 3 3 66 3 3 33333 3 66 99 7 4444 00 00 5 0 0 55 33333 55 6 6 4 0 0 55 55 111 55 55 2 00 0 0 4 22 0 0 0 00000 0 1111111111111111 7777777777 9999 44444444444444 0 0 4 2 888 22222222222222 0 0 0 0 444444 0 2 99 2222 7
consensus : GTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAAATTAC---CATAT-AAC-AC-----TA------GTATT----------AG-A--ATAGTC---GT-------AATAA-TTTAT-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTCA-ATATCTCC
Reference ( family-2203 ) : GTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAAATTAC---CATAT-AAC-AC-----TA------GTATT----------AG-A--ATAGTC---GT-------AATAA-TTTAT-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTCA-ATATCTCC
gi|1 : TGTTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAAAGAAAC-AT-ATATT----G-CA-AT--AATAAC-ATCATTGA-AAAGA-----CACCAAT-A--A--GTT-ACAA
gi|10 : cttgactggggtttatttctcggagcatacattttcctgtacattaaaattcattctaaatgacaaattgtacagattatcaagtatattcctagaaatttagtctaacacttaattcactccaattaacgatcatattcttggcagatcacaaacaaaactgctctgaactatggtcaaaagtaggtcggtacaggtgagaaaccaagccattatcattgtcattgctagttgagtctagtaaagcctcctaaattttattttatttcaaatgatttaaaaatacacaaaaaagaaacagtacttttatgttgttgtGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATTAATGA-AAAAA-----CACCAAT-A--A--ATT-ACAAT----TAT--A--ACAATTTAAGATTAC-GAAACA-G--AGTATGCGTGGTA--TG--TAAA-TA-TATATATAT-CT--ACTT--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAG
gi|11 : attGTATTATTTATTTCCAACA--G-CAGTACTG-TT---TATAGGTTA---C-A-AA---GAAC-AT-ATATT----A-AA-TT--GATGAT-ATACATAAGAAATA-----CATGGTT-A--AC-GCT-AT-GT----AAC--A--ACAATTTG----TA--AACATA-A--AGCACGCGCG--C--GGCTCAAATTA-TATGTACAT-AA--A--TTCATCA--ACACGTTGAGGATAAATC-----A---T--GTGA-CCTCT-GATT
gi|12 : gtattTTATTTCTAAAA--GTCGGTACTGGCT---TATAGGATA---CCATAAA-GACAC-ATTATATTTAGCA-CT-TT--AATA-C-A-CAACGA-AAAGA-----CACCAAT-ACAA--GTTGACAATC---TAT--ATTACAATGTGAGAT-AC-GAAACA-GGGAGTATACGTG--A--TG--TAAA-GA-TATA
gi|13 : atcgtattctggcaTATTTCTAAAATCG-CG-TACTG-CTCTATATGTGATACCAT-A-ATA-GACACTATTATATT----AGCA-CTTTAATAACTAT-AACGA-AAAGA-----CACCAATAA--A--GTTGACAATCTCATAT--T--ACAATGTGAGA-TACTGAAACAGG--AGTATACGTG--ATCTG--TAAA-GA-TATA
gi|14 : TTATTTCTAAAA--G-TGGTACTG-CT---TATAGGATA---C-ATAAA-GACAC-AT-ATATT----A-CA-TT--AATAAC-ATCAACGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--ATTACAATTTGAGAATAC-GAAACA-G--AGTATACGTG--A--TG--TAAA-GA-TATAaca
gi|15 : ----------AG-A--ATAGCT---GT-------AATAA-TTAAT-ACATTGACGGCTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTTATATACAG-GA-CAAA------TAAATA-TGAA--A----TGATATTCGTCTTCA-ATATCTCa
gi|17 : GTATTGTTTATTTTCAAAAA-G-CAATACTG-TT---TATAGGATA---T-A-AAA-GAAAC-AT-ATGTT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--ATT-ACAAT----TGT--A--ACAATTTAAGtata
gi|2 : gtattGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATAA-AAAAAAAACACACCAAT-G--A--ATT-ACAAG----TAT--A--ACAATT-AAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TAATATATATTTTAT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATTATA---AAAAATAC----ATAT-AAC-ATG----TATTT---GTATT----------AG-ATAATAGCT---GTTACAAGTAATAAATTTAT-ACATTGACGG-TTTTCATAATTATAA-------------TATT--CCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTCA-TTATCTCC
gi|20 : tattGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGGTA---atat
gi|21 : tgtattTTTATTTCCAAAA--G-CAATACTG-CT---TATAG
gi|3 : GTATTGTTTATTTCCAAAA--G-CAATATTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AA-AAC-ATCAAT-A-AAATA------ACCAAT-A--AAAGT--ACAAT----TATTAA--ACAATTTAA-ATTAC-GAAACA-G--AGTA-GC-TG--AA-TG--TAAA-TA-TATA-------------------A--ATA--TTGAGGATAAACCTCTTTATGTT---TGG-CCTC--AATT-AAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAAATTA----CATATAAAC-ACAGATTTT------GTATT----------AGAA--ATACTG---TT-------AATAA-TTTAT-ACA-TGAC-GTTTATCATA---ATAA-------------T-TTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATACAGTGA-CAAAATATATTAAA-A-TATA--A----TGATATTCGTCTTCACATATC
gi|4 : attGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--GATGAC-ATCAATGA-AAAAA-----CACCAAT-A--A--ATT-ACAAT----TAT--A--ACAATTTAAGATTAC-GAAACA-G--AGTATGCATG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAAAAGCTTTATACAAAAAAAA-TACC-AAAATTA----CATAT-AAC-AC-----TA------GT-------------------ACAGTT---G----------TAA-TTTAT-ACATTGGCGGTTTTTCATA---ATAA-------------TATTTACCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TAATATTCGTCTTCC-ATATCTCCctaattatg
gi|5 : TATTTATTTCCAAAA-----AATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ACATT----A-CATAT--AA-----ATCAATGA-AAAGA-----CACCAAT-A--A--ATT-ACAAT----TAT--A--AACATTTAAGATTAC-GAAACA-G--AGTATGCGTG---------TAAA-TA-TATATATTT-ATTTA--T--ATAATAATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAATTTA----CATAT-AAC--C-----TAGTATTTGTATT----------AGAA--ATAGCT---GT--------ATAA-TTTAT-ACATTGACGGTTTTTCATA---ATA---------------ATTTATCAATGTACAATTTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATATTAAA--A----TGATATTC
gi|6 : ttttaTT-AT--A--T--CTAAT-ATG--TTAGCGATAATCATCTTTATGTTCTGTGGGCCTCTTAATTCAAGTTGGTTGAAGCTTTATAC-AAGAATT-TACCAAAAATTAC---CATAT-AGCAAC-----TA------GTATTGTGTAATTAGAG-A--ATAGTCGTGGT-------AATAA-TTTACGACA-TGACGG-TTTTCATA---ATAGAAAAAAAAATAACTATGTATCAATATACAA-TTTTCTTAGTTGTTTCATATGCAG-GACCAAA------TAAATA-TTGA--ATGATTGATATTCGTCTTCA-ATATCTC
gi|7 : aTT-AT--A--T--CTAAT-ATG--TTAGCGATAATCATCTTTATGTTCTGTGGGCCTCTTAATTCAAGTTGGTTGAAGCTTTATAC-AAGAATT-TACCAAAAATTAC---CATAT-AGCAAC-----TA------GTATTGTGTAATTAGAG-A--ATAGTCGTGGT-------AATAA-TTTACGACA-TGACGG-TTTTCATA---ATAGAAAAAAAAATAACTATGTATCAATATACAA-TTTTCTTAGTTGTTTCATATGCAG-GACCAAA------TAAATA-TTGA--ATGATTGATATTCGTCTTCA-ATATCTCtata
gi|8 : aGTATTGTTTATTTACGAAA--G-CAATACTG-CT---TATAGGATA---C-A-AAAAGAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATCA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGTGAATAC-AAAACA-C--AGTATGCATG--A--TG--TAAA-GA---------T-AT--A--T--ATAA--ATA--TTGAGGATAACCCTCTCTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACT-AAAATTACATGCATAT-AAC-AT-----TA------GTATT----------tata
gi|9 : ttA-TG-TATAAATT--AT--A--T--CTAA--ATA--TTTAGGATAATCATCTTTATGTT--GTGG-CCTCT-AATTCAAGTT--TAGAAGCTTTATAC-AAAATTT-TACC-AAAATTAC----ATAT-AGC-AA-----TA------GTATTTGTAATTAG-AG-A--ATAGTG---GT-------AATAA-TTTAG-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATATACAA-TTTTCTTAGTT-TTTCATATGCAG-GA-CAAA------TAAATA-TGAATTA----TGATATTCGTCTTCA-ATATCTCtgtattag
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACTAAAAACTCTAAGGATTTCGTGAAATCACAGGAAAGGTGGCATGGTAATTTTACGAAATCACTGACTGGGATTTATTTCTTGGAGCATATATTTTCCTGTACATTAAAATTCATTCTAAA
Unaligned ( gi|18 ): ACAAGCAGAAATGATCAACCCACTATTATGCAATTATCCAATATAACCTGCTAGCTACAGTTTTTCTAACAAGTATTTGAAAATAAAATTTTCGATACGGCTTATATGC
Unaligned ( gi|19 ): TCTAAAAGTATTTGAAAATGAAAATTTTCGATACTGGTATATGATCGTTATG
Alignments
lowQualScore : 1111 11 11111 11 11 11 1 22222 3333333333333333 5555555555 1111 22222222222222 1 1 55555555555555 1 1 111111 2222
lowQualScore : 66 2 2 555 555 3 6 6 3 6 7777 3 3 44 3 3 88888 3 44 77 6 1111 55 00 3 4 4 55 33333 55 3 3 3 1 4 55 55 666 33 55 1 11 8 8 1 22 5 5 0 00000 5 0000000000000000 6666666666 0000 88888888888888 5 0 9 1 888 77777777777777 5 0 5 0 444444 5 1 66 1111 5
lowQualScore : .. . . ... ... . . . . . .... . . .. . . ..... . .. .. . .... .. .. . . . .. ..... .. . . . . . .. .. ... .. .. . .. . . . .. . . . ..... . ................ .......... .... .............. . . . . ... .............. . . . . ...... . . .. .... .
lowQualScore : 88 9 9 000 444 3 7 7 3 7 1111 3 3 66 3 3 33333 3 66 99 7 4444 00 00 5 0 0 55 33333 55 6 6 4 0 0 55 55 111 55 55 2 00 0 0 4 22 0 0 0 00000 0 1111111111111111 7777777777 9999 44444444444444 0 0 4 2 888 22222222222222 0 0 0 0 444444 0 2 99 2222 7
consensus : GTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAAATTAC---CATAT-AAC-AC-----TA------GTATT----------AG-A--ATAGTC---GT-------AATAA-TTTAT-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTCA-ATATCTCC
Reference ( family-2203 ) : GTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAAATTAC---CATAT-AAC-AC-----TA------GTATT----------AG-A--ATAGTC---GT-------AATAA-TTTAT-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTCA-ATATCTCC
gi|1 : TGTTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAAAGAAAC-AT-ATATT----G-CA-AT--AATAAC-ATCATTGA-AAAGA-----CACCAAT-A--A--GTT-ACAA
gi|10 : cttgactggggtttatttctcggagcatacattttcctgtacattaaaattcattctaaatgacaaattgtacagattatcaagtatattcctagaaatttagtctaacacttaattcactccaattaacgatcatattcttggcagatcacaaacaaaactgctctgaactatggtcaaaagtaggtcggtacaggtgagaaaccaagccattatcattgtcattgctagttgagtctagtaaagcctcctaaattttattttatttcaaatgatttaaaaatacacaaaaaagaaacagtacttttatgttgttgtGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATTAATGA-AAAAA-----CACCAAT-A--A--ATT-ACAAT----TAT--A--ACAATTTAAGATTAC-GAAACA-G--AGTATGCGTGGTA--TG--TAAA-TA-TATATATAT-CT--ACTT--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAG
gi|11 : attGTATTATTTATTTCCAACA--G-CAGTACTG-TT---TATAGGTTA---C-A-AA---GAAC-AT-ATATT----A-AA-TT--GATGAT-ATACATAAGAAATA-----CATGGTT-A--AC-GCT-AT-GT----AAC--A--ACAATTTG----TA--AACATA-A--AGCACGCGCG--C--GGCTCAAATTA-TATGTACAT-AA--A--TTCATCA--ACACGTTGAGGATAAATC-----A---T--GTGA-CCTCT-GATT
gi|12 : gtattTTATTTCTAAAA--GTCGGTACTGGCT---TATAGGATA---CCATAAA-GACAC-ATTATATTTAGCA-CT-TT--AATA-C-A-CAACGA-AAAGA-----CACCAAT-ACAA--GTTGACAATC---TAT--ATTACAATGTGAGAT-AC-GAAACA-GGGAGTATACGTG--A--TG--TAAA-GA-TATA
gi|13 : atcgtattctggcaTATTTCTAAAATCG-CG-TACTG-CTCTATATGTGATACCAT-A-ATA-GACACTATTATATT----AGCA-CTTTAATAACTAT-AACGA-AAAGA-----CACCAATAA--A--GTTGACAATCTCATAT--T--ACAATGTGAGA-TACTGAAACAGG--AGTATACGTG--ATCTG--TAAA-GA-TATA
gi|14 : TTATTTCTAAAA--G-TGGTACTG-CT---TATAGGATA---C-ATAAA-GACAC-AT-ATATT----A-CA-TT--AATAAC-ATCAACGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--ATTACAATTTGAGAATAC-GAAACA-G--AGTATACGTG--A--TG--TAAA-GA-TATAaca
gi|15 : ----------AG-A--ATAGCT---GT-------AATAA-TTAAT-ACATTGACGGCTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTTATATACAG-GA-CAAA------TAAATA-TGAA--A----TGATATTCGTCTTCA-ATATCTCa
gi|17 : GTATTGTTTATTTTCAAAAA-G-CAATACTG-TT---TATAGGATA---T-A-AAA-GAAAC-AT-ATGTT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--ATT-ACAAT----TGT--A--ACAATTTAAGtata
gi|2 : gtattGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATAA-AAAAAAAACACACCAAT-G--A--ATT-ACAAG----TAT--A--ACAATT-AAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TAATATATATTTTAT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATTATA---AAAAATAC----ATAT-AAC-ATG----TATTT---GTATT----------AG-ATAATAGCT---GTTACAAGTAATAAATTTAT-ACATTGACGG-TTTTCATAATTATAA-------------TATT--CCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTCA-TTATCTCC
gi|20 : tattGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGGTA---atat
gi|21 : tgtattTTTATTTCCAAAA--G-CAATACTG-CT---TATAG
gi|3 : GTATTGTTTATTTCCAAAA--G-CAATATTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AA-AAC-ATCAAT-A-AAATA------ACCAAT-A--AAAGT--ACAAT----TATTAA--ACAATTTAA-ATTAC-GAAACA-G--AGTA-GC-TG--AA-TG--TAAA-TA-TATA-------------------A--ATA--TTGAGGATAAACCTCTTTATGTT---TGG-CCTC--AATT-AAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAAATTA----CATATAAAC-ACAGATTTT------GTATT----------AGAA--ATACTG---TT-------AATAA-TTTAT-ACA-TGAC-GTTTATCATA---ATAA-------------T-TTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATACAGTGA-CAAAATATATTAAA-A-TATA--A----TGATATTCGTCTTCACATATC
gi|4 : attGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--GATGAC-ATCAATGA-AAAAA-----CACCAAT-A--A--ATT-ACAAT----TAT--A--ACAATTTAAGATTAC-GAAACA-G--AGTATGCATG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAAAAGCTTTATACAAAAAAAA-TACC-AAAATTA----CATAT-AAC-AC-----TA------GT-------------------ACAGTT---G----------TAA-TTTAT-ACATTGGCGGTTTTTCATA---ATAA-------------TATTTACCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TAATATTCGTCTTCC-ATATCTCCctaattatg
gi|5 : TATTTATTTCCAAAA-----AATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ACATT----A-CATAT--AA-----ATCAATGA-AAAGA-----CACCAAT-A--A--ATT-ACAAT----TAT--A--AACATTTAAGATTAC-GAAACA-G--AGTATGCGTG---------TAAA-TA-TATATATTT-ATTTA--T--ATAATAATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAATTTA----CATAT-AAC--C-----TAGTATTTGTATT----------AGAA--ATAGCT---GT--------ATAA-TTTAT-ACATTGACGGTTTTTCATA---ATA---------------ATTTATCAATGTACAATTTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATATTAAA--A----TGATATTC
gi|6 : ttttaTT-AT--A--T--CTAAT-ATG--TTAGCGATAATCATCTTTATGTTCTGTGGGCCTCTTAATTCAAGTTGGTTGAAGCTTTATAC-AAGAATT-TACCAAAAATTAC---CATAT-AGCAAC-----TA------GTATTGTGTAATTAGAG-A--ATAGTCGTGGT-------AATAA-TTTACGACA-TGACGG-TTTTCATA---ATAGAAAAAAAAATAACTATGTATCAATATACAA-TTTTCTTAGTTGTTTCATATGCAG-GACCAAA------TAAATA-TTGA--ATGATTGATATTCGTCTTCA-ATATCTC
gi|7 : aTT-AT--A--T--CTAAT-ATG--TTAGCGATAATCATCTTTATGTTCTGTGGGCCTCTTAATTCAAGTTGGTTGAAGCTTTATAC-AAGAATT-TACCAAAAATTAC---CATAT-AGCAAC-----TA------GTATTGTGTAATTAGAG-A--ATAGTCGTGGT-------AATAA-TTTACGACA-TGACGG-TTTTCATA---ATAGAAAAAAAAATAACTATGTATCAATATACAA-TTTTCTTAGTTGTTTCATATGCAG-GACCAAA------TAAATA-TTGA--ATGATTGATATTCGTCTTCA-ATATCTCtata
gi|8 : aGTATTGTTTATTTACGAAA--G-CAATACTG-CT---TATAGGATA---C-A-AAAAGAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATCA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGTGAATAC-AAAACA-C--AGTATGCATG--A--TG--TAAA-GA---------T-AT--A--T--ATAA--ATA--TTGAGGATAACCCTCTCTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACT-AAAATTACATGCATAT-AAC-AT-----TA------GTATT----------tata
gi|9 : ttA-TG-TATAAATT--AT--A--T--CTAA--ATA--TTTAGGATAATCATCTTTATGTT--GTGG-CCTCT-AATTCAAGTT--TAGAAGCTTTATAC-AAAATTT-TACC-AAAATTAC----ATAT-AGC-AA-----TA------GTATTTGTAATTAG-AG-A--ATAGTG---GT-------AATAA-TTTAG-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATATACAA-TTTTCTTAGTT-TTTCATATGCAG-GA-CAAA------TAAATA-TGAATTA----TGATATTCGTCTTCA-ATATCTCtgtattag
blockSeqs : TC T G CTA CCA C T A T T TAGC G T TT T G AAACA A CA AA G CTCA TA TT T T G GG ATC CT T A T A T TT . TCA TA CG A CT G T T GG A . A CATGC A ACAGATTTT GTGTAATTAG ATA TGTTACAAGTA A G T T ATT GAAAAAAAAATAAC T G T C ATATAT T A TT TGAT C
blockSeqs : A . . . . . T . . T . . . . . . . . . C G C . TT A . . . AA . . . T T . . . A T . A CT G T T GG . . A CC . CTAGTATTT GTGTAATTAG AA CGTGGTA . G T T . GAAAAAAAAATAAC . G . C . . A . TGAT .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . T . . . C . . . T T . . . A T . A . . . T . . . . CC . AACTA TGTAATTAG AA CGTGGTA . . T T . A . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . T . . . A . . . T T . . . A . . A . . . C . . . . C . AACTA . A GTTA . . T T . A . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . T . . . A . . . A T . . . C . . A . . . C . . . . C . ACTA . A GGTA . . . . . A . . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . T . . . A . . . . T . . . C . . T . . . T . . . . C . ATTA . A TGT . . . . . G . . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . A . . . A . . . . T . . . A . . T . . . C . . . . C . AATA . . TG . . . . . . . . . . . . G . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . C . . C . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqCons : A**** ** ACTA************ CGTGGTA*******
originalCons : GTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAAATTAC---CATAT-AAC-AC-----TA------GTATT----------AG-A--ATAGTC---GT-------AATAA-TTTAT-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTCA-ATATCTCC
finalCons : GTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGAGATTAC-GAAACA-G--AGTATGCGTGA----TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACC-AAAATTAC---CATAT-AACACTA------------GTATT----------AG-A--ATAGTCGTGGTA-------ATAA-TTTAT-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTCA-ATATCTCC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACTAAAAACTCTAAGGATTTCGTGAAATCACAGGAAAGGTGGCATGGTAATTTTACGAAATCACTGACTGGGATTTATTTCTTGGAGCATATATTTTCCTGTACATTAAAATTCATTCTAAA
Unaligned ( gi|18 ): ACAAGCAGAAATGATCAACCCACTATTATGCAATTATCCAATATAACCTGCTAGCTACAGTTTTTCTAACAAGTATTTGAAAATAAAATTTTCGATACGGCTTATATGC
Unaligned ( gi|19 ): TCTAAAAGTATTTGAAAATGAAAATTTTCGATACTGGTATATGATCGTTATG
Alignments
lowQualScore : 1111 11 11111 11 11 11 1 22222 333333333333333 5555555555 1111 222222222 1 1 55555555555555 1 1 111111 2222
lowQualScore : 66 2 2 555 555 3 6 6 3 6 7777 3 3 44 3 3 88888 3 44 77 6 1111 55 00 3 4 4 55 33333 55 3 3 3 1 4 55 55 666 33 55 1 11 8 8 1 22 5 5 0 00000 5 333333333333333 6666666666 0000 444444444 5 0 9 1 888 77777777777777 5 0 5 0 444444 5 1 66 1111 5
lowQualScore : .. . . ... ... . . . . . .... . . .. . . ..... . .. .. . .... .. .. . . . .. ..... .. . . . . . .. .. ... .. .. . .. . . . .. . . . ..... . ............... .......... .... ......... . . . . ... .............. . . . . ...... . . .. .... .
lowQualScore : 88 9 9 000 444 3 7 7 3 7 1111 3 3 66 3 3 33333 3 66 99 7 4444 00 00 5 0 0 55 33333 55 6 6 4 0 0 55 55 111 55 55 2 00 0 0 4 22 0 0 0 00000 0 000000000000000 7777777777 9999 555555555 0 0 4 2 888 22222222222222 0 0 0 0 444444 0 2 99 2222 7
consensus : GTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACCAAAA-TTAC---CATAT-AACA-C-----TA------GTATT----------AG-A--ATAGCCGT----GGTAATAA-TTTAT-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTCA-ATATCTCC
Reference ( family-2203 ) : GTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACCAAAA-TTAC---CATAT-AACA-C-----TA------GTATT----------AG-A--ATAGTCGT----GGTAATAA-TTTAT-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTCA-ATATCTCC
gi|1 : TGTTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAAAGAAAC-AT-ATATT----G-CA-AT--AATAAC-ATCATTGA-AAAGA-----CACCAAT-A--A--GTT-ACAA
gi|10 : cttgactggggtttatttctcggagcatacattttcctgtacattaaaattcattctaaatgacaaattgtacagattatcaagtatattcctagaaatttagtctaacacttaattcactccaattaacgatcatattcttggcagatcacaaacaaaactgctctgaactatggtcaaaagtaggtcggtacaggtgagaaaccaagccattatcattgtcattgctagttgagtctagtaaagcctcctaaattttattttatttcaaatgatttaaaaatacacaaaaaagaaacagtacttttatgttgttgtGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATTAATGA-AAAAA-----CACCAAT-A--A--ATT-ACAAT----TAT--A--ACAATTTAAGATTAC-GAAACA-G--AGTATGCGTGGTA--TG--TAAA-TA-TATATATAT-CT--ACTT--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAG
gi|11 : attGTATTATTTATTTCCAACA--G-CAGTACTG-TT---TATAGGTTA---C-A-AA---GAAC-AT-ATATT----A-AA-TT--GATGAT-ATACATAAGAAATA-----CATGGTT-A--AC-GCT-AT-GT----AAC--A--ACAATTTG----TA--AACATA-A--AGCACGCGCG--C--GGCTCAAATTA-TATGTACAT-AA--A--TTCATCA--ACACGTTGAGGATAAATC-----A---T--GTGA-CCTCT-GATT
gi|12 : gtattTTATTTCTAAAA--GTCGGTACTGGCT---TATAGGATA---CCATAAA-GACAC-ATTATATTTAGCA-CT-TT--AATA-C-A-CAACGA-AAAGA-----CACCAAT-ACAA--GTTGACAATC---TAT--ATTACAATGTGAGAT-AC-GAAACA-GGGAGTATACGTG--A--TG--TAAA-GA-TATA
gi|13 : atcgtattctggcaTATTTCTAAAATCG-CG-TACTG-CTCTATATGTGATACCAT-A-ATA-GACACTATTATATT----AGCA-CTTTAATAACTAT-AACGA-AAAGA-----CACCAATAA--A--GTTGACAATCTCATAT--T--ACAATGTGAGA-TACTGAAACAGG--AGTATACGTG--ATCTG--TAAA-GA-TATA
gi|14 : TTATTTCTAAAA--G-TGGTACTG-CT---TATAGGATA---C-ATAAA-GACAC-AT-ATATT----A-CA-TT--AATAAC-ATCAACGA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--ATTACAATTTGAGAATAC-GAAACA-G--AGTATACGTG--A--TG--TAAA-GA-TATAaca
gi|15 : ----------AG-A--ATAGCTGT-------AATAA-TTAAT-ACATTGACGGCTTTTCATA---ATAG-------------TATTTATCAATGTACAA-TTTTCTTAGTT-TTTTATATACAG-GA-CAAA------TAAATA-TGAA--A----TGATATTCGTCTTCA-ATATCTCa
gi|17 : GTATTGTTTATTTTCAAAAA-G-CAATACTG-TT---TATAGGATA---T-A-AAA-GAAAC-AT-ATGTT----A-CA-AT--AATAAC-ATCAATGA-AAAGA-----CACCAAT-A--A--ATT-ACAAT----TGT--A--ACAATTTAAGtata
gi|2 : gtattGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATAA-AAAAAAAACACACCAAT-G--A--ATT-ACAAG----TAT--A--ACAATT-AAGATTAC-GAAACA-G--AGTATGCGTG--A--TG--TAAA-TAATATATATTTTAT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATTATA--AAAA-ATAC----ATAT-AACA-TG----TATTT---GTATT----------AG-ATAATAGCTGTTACAAGTAATAAATTTAT-ACATTGACGG-TTTTCATAATTATAA-------------TATT--CCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TGATATTCGTCTTCA-TTATCTCC
gi|20 : tattGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGGTA---atat
gi|21 : tgtattTTTATTTCCAAAA--G-CAATACTG-CT---TATAG
gi|3 : GTATTGTTTATTTCCAAAA--G-CAATATTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--AA-AAC-ATCAAT-A-AAATA------ACCAAT-A--AAAGT--ACAAT----TATTAA--ACAATTTAA-ATTAC-GAAACA-G--AGTA-GC-TG--AA-TG--TAAA-TA-TATA-------------------A--ATA--TTGAGGATAAACCTCTTTATGTT---TGG-CCTC--AATT-AAGTT--TAGAAGCTTTATAC-AAAAATT-TACCAAAA-TTA----CATATAAACA-CAGATTTT------GTATT----------AGAA--ATA--C-T----GTTAATAA-TTTAT-ACA-TGAC-GTTTATCATA---ATAA-------------T-TTTATCAATGTACAA-TTTTCTTAGTT-TTTCATATACAGTGA-CAAAATATATTAAA-A-TATA--A----TGATATTCGTCTTCACATATC
gi|4 : attGTATTGTTTATTTCCAAAA--G-CAATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ATATT----A-CA-AT--GATGAC-ATCAATGA-AAAAA-----CACCAAT-A--A--ATT-ACAAT----TAT--A--ACAATTTAAGATTAC-GAAACA-G--AGTATGCATG--A--TG--TAAA-TA-TATATATTT-AT--A--T--ATAA--ATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAAAAGCTTTATACAAAAAAAA-TACCAAAA-TTA----CATAT-AACA-C-----TA------GT-------------------ACAGTTG----------TAA-TTTAT-ACATTGGCGGTTTTTCATA---ATAA-------------TATTTACCAATGTACAA-TTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATA-TAAA--A----TAATATTCGTCTTCC-ATATCTCCctaattatg
gi|5 : TATTTATTTCCAAAA-----AATACTG-CT---TATAGGATA---T-A-AAA-GAAAC-AT-ACATT----A-CATAT--AA-----ATCAATGA-AAAGA-----CACCAAT-A--A--ATT-ACAAT----TAT--A--AACATTTAAGATTAC-GAAACA-G--AGTATGCGTG---------TAAA-TA-TATATATTT-ATTTA--T--ATAATAATA--TTGAGGATAAACCTCTTTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACCAAAT-TTA----CATAT-AAC--C-----TAGTATTTGTATT----------AGAA--ATAGCTGT--------ATAA-TTTAT-ACATTGACGGTTTTTCATA---ATA---------------ATTTATCAATGTACAATTTTTCTTAGTT-TTTCATATACAG-GA-CAAA------TAAATATTAAA--A----TGATATTC
gi|6 : ttttaTT-AT--A--T--CTAAT-ATG--TTAGCGATAATCATCTTTATGTTCTGTGGGCCTCTTAATTCAAGTTGGTTGAAGCTTTATAC-AAGAATT-TACCAAAAATTAC---CATAT-AGCAAC-----TA------GTATTGTGTAATTAGAG-A--ATAGTCGT----GGTAATAA-TTTACGACA-TGACGG-TTTTCATA---ATAGAAAAAAAAATAACTATGTATCAATATACAA-TTTTCTTAGTTGTTTCATATGCAG-GACCAAA------TAAATA-TTGA--ATGATTGATATTCGTCTTCA-ATATCTC
gi|7 : aTT-AT--A--T--CTAAT-ATG--TTAGCGATAATCATCTTTATGTTCTGTGGGCCTCTTAATTCAAGTTGGTTGAAGCTTTATAC-AAGAATT-TACCAAAAATTAC---CATAT-AGCAAC-----TA------GTATTGTGTAATTAGAG-A--ATAGTCGT----GGTAATAA-TTTACGACA-TGACGG-TTTTCATA---ATAGAAAAAAAAATAACTATGTATCAATATACAA-TTTTCTTAGTTGTTTCATATGCAG-GACCAAA------TAAATA-TTGA--ATGATTGATATTCGTCTTCA-ATATCTCtata
gi|8 : aGTATTGTTTATTTACGAAA--G-CAATACTG-CT---TATAGGATA---C-A-AAAAGAAAC-AT-ATATT----A-CA-AT--AATAAC-ATCAATCA-AAAGA-----CACCAAT-A--A--GTT-ACAAT----TAT--A--ACAATTTGTGAATAC-AAAACA-C--AGTATGCATG--A--TG--TAAA-GA---------T-AT--A--T--ATAA--ATA--TTGAGGATAACCCTCTCTATGTT--GTGG-CCTCT-AATTTAAGTT--TAGAAGCTTTATAC-AAAAATT-TACTAAAA-TTACATGCATAT-AACA-T-----TA------GTATT----------tata
gi|9 : ttA-TG-TATAAATT--AT--A--T--CTAA--ATA--TTTAGGATAATCATCTTTATGTT--GTGG-CCTCT-AATTCAAGTT--TAGAAGCTTTATAC-AAAATTT-TACCAAAA-TTAC----ATAT-AGCA-A-----TA------GTATTTGTAATTAG-AG-A--ATAGT-------GGTAATAA-TTTAG-ACATTGACGGTTTTTCATA---ATAG-------------TATTTATCAATATACAA-TTTTCTTAGTT-TTTCATATGCAG-GA-CAAA------TAAATA-TGAATTA----TGATATTCGTCTTCA-ATATCTCtgtattag
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACTAAAAACTCTAAGGATTTCGTGAAATCACAGGAAAGGTGGCATGGTAATTTTACGAAATCACTGACTGGGATTTATTTCTTGGAGCATATATTTTCCTGTACATTAAAATTCATTCTAAA
Unaligned ( gi|18 ): ACAAGCAGAAATGATCAACCCACTATTATGCAATTATCCAATATAACCTGCTAGCTACAGTTTTTCTAACAAGTATTTGAAAATAAAATTTTCGATACGGCTTATATGC
Unaligned ( gi|19 ): TCTAAAAGTATTTGAAAATGAAAATTTTCGATACTGGTATATGATCGTTATG