lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111 11111111111111111
lowQualScore : 6666 1 55555 8888888 4 4 555555 22 4 4 444444 2 33 333 66666 1 4 1 22 4 4 22222 555555 1 22 444444444 333 2 4 77777777777 4 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 4 4 1 55 444444 4 44444 6666666 1 1 1 44 222 1 3333333 1 22222 444 4444444444444 2222222222222222222222222222222222222 1 1 22222 11 2 1 6666666666666666666666666666 3333 2 33333333 1 33333333 2 00000000000000000 11 55555555555 333333333333333 11111111 555555 22 3
lowQualScore : 0000 5 22222 3333333 0 0 888888 11 0 0 222222 6 0 11 111 55555 5 4 2 0 5 22 0 0 77777 222222 3 00 222222222 555 0 0 11111111111 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 5 55 222222 0 3 33333 5555555 5 3 5 5 4 2 33 4 2 3 111 5 3 1111111 11 3 00000 777 0 0 888 2222222222222 4444444444444444444444444444444444444 3 1 7 3 77777 7 88 6 8 0 5 9999999999999999999999999999 44 9999 7 0 55555555 4 5 66666666 7 7 2 22222222222222222 2 3 33 33333333333 8 666666666666666 5 99999999 444444 6 99 3 8 8 8 3
lowQualScore : .... . ..... ....... . . ...... .. . . ...... . . .. ... ..... . . . . . .. . . ..... ...... . .. ......... ... . . ........... . ......................................................................................... . . . .. ...... . . ..... ....... . . . . . . .. . . . ... . . ....... .. . ..... ... . . ... ............. ..................................... . . . . ..... . .. . . . . ............................ .. .... . . ........ . . ........ . . . ................. . . .. ........... . ............... . ........ ...... . .. . . . . .
lowQualScore : 0000 0 00000 0000000 0 0 000000 00 0 0 000000 0 0 00 000 00000 0 0 5 0 0 88 0 0 33333 333333 3 77 333333333 000 0 0 00000000000 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00 000000 0 0 55555 0000000 5 0 5 0 0 5 00 0 5 0 000 5 0 0000000 77 3 33333 777 7 7 000 7777777777777 3333333333333333333333333333333333333 3 0 3 3 77777 0 00 7 7 2 5 7777777777777777777777777777 88 2222 3 0 55555555 0 5 22222222 0 8 2 77777777777777777 0 2 00 99999999999 0 444444444444444 6 00000000 888888 7 77 2 0 0 0 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCT-GG-ATACACAGGATGAAGTCATTCAACGCT-CAA-TGTATCAAC---AAACTTACTGACCTCA-CCGG-GATACCGGCTAAACCATTAA-CAGA-TTCTGAGCTTCATCTACTTGTTTGATCATGTGTC-TAACAC-TACAACCGTATTATCCATTTTATTTCTTGGGCTTTAATCCTGTTTACTAA-GTTTCCACATGCNAATTTANTACATTATACATGTTACTGGTTTNCAAGACTGTGTACTTAG-TCCAGTTTTC---C--GCA-TTT-ACATCTAC-C-TTCG-TGCCAAAATAATCCATTTACATTTGAATCTGACCGTTATCTTACATCTTATATCTGTTATTCT--ATAA-TAC-ATGTATTTTATTTCCCCCCTTCTACCCTAGA-CTTGATCTGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATTCATGAAATAGTTT-TATATATACTT-CTAGTGCAGTTAGGAGAGAT--GAGAGAGAAAT-ACGA-GTTGATTTTT-GCACTGATTACTCGTCCTACCNGAGACGTCAATTATGCGNGGTAGAATCAGCCNCTTGGACAGAGATAGGNCGTNTCCT-AANTCGCTNCNTTGAAAAACNATTGAATTAGCGAGCCAAA-CACAATAA--ATG--CAATTTGCAACGTNNA-T-ACG-T-----TGTAGATTTAG--TAGTTTT--TA--TGCT---CGTT------TTT--TATA-ACTATTTGT-ATT---T-GTAAACCTTTTCGTT-TGTCCTGAGGAAGGGACGGGTCGTTCCCG-AAAAA----AGAATTAATA-TTT--AATTGTTCGTGTC-GTTGGTCATTTTAAAACTAGTGNTTTTTGTAANTCTCAATTTT--------ATTCTATTTACTT-AAATTTATCTCTT-------CA-ACA---TTTTTATTTATN-ATGTGTT-GTC------TTTTTTA-CTGTGCTTTT-CCAGA---ATGTCTAT---TTCATTATATACAG-TA-T-GCCC-TGTGACTTG-GTTTTTAC-C-TGAATAAA-TCATTTATC
Reference ( gi|1 ) : CTAATGTTGGTCAGATACAATAGAACGCAAAGGAAAATTCTTGGTATACACAGGATGAAGTCATTCAACCCTACAAATGTATCAACCCCAAA-TTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAAAATTCTGAGCTTCATCTACTTGTTTGATTCTGTGTCTTAACACTTACAA-CGTA-TACCCA-TTTATTTCTTGGGC-T-AATCCTGTTTACTTATGTTTCCACATGCTAATTTACTACATT-TACCTGTTACTGGTTT-CAAGACT-TGTACTTAGTTCCAGTTTTC---CTTACA-TTT-ACATCTA--C-TTCGCTGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCT-ATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGAC---------CGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCAATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCATTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACCAG-GACGTTAATTA---AT--TAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCTTAAATCGCTCCTTTGAAAAACAAATAAATTAGTGAGCCAAA-CACAAGAA--ATGGTTAACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTT--CA--TGCTAGTCGTT------TTTGATATA-ATTATTTGT-ATT---T-GTAAAACCCTTCGTTCTGTCCTGAGAAAGGGACAGGTCGTTCCCGAAAAAA----AAAATTAATAGTTTAAAATTGTTCAT-TCAGTTGGTCATTTTAAAA-TAGTGCTTTTTGTAATTCTTAATTTT--------ATTCTATTTACTTTAAATTTATTTCTT-----TTCAAAAT---TTTTTGTTTATA-ATGTGTTAGTC------TTTTTTA-CTGTG-TTTT-ACAGA---ATATCTAT---TTTATTATATACAGTTAGT-GCCCTTGTGACTTGAGTTTTTAC-C-TGAATAAA-TCATTTATC
gi|4 : AATTCT-GG-ATACACAGGATGAAGTCATTCAACGCT-CAA-TGTATCAAC---AAACTTACTGACCTCA-CCGG-GATACCGGCTAAACCATTAA-CAGA-TTCTGAGCTTCATCTACTTGTTTGATCATGTGTC-TAACAC-TACAACCGTATTATCCATTTTATTTC-TGGGCTT-AATCCTGTTTACTAA---TTTCACATGCAAATTTAGTACATTATACATG-TACTGGTTTCCAAGACTGTGTACTTA--TCTAGTTTTC---C-TACACTTT-ACATCTAC-C-TTCG-TGCCAAAATAATC
gi|2 : -TTTATTTCT-GGGC-TTAATCCTGTTTACT-A-GTTTC-ACATGCTAATTTACTACATTATACATGT-ACTGGTTTTCAAGACTGTGTACTTAGT-CCAGTTTTC---CT-ACA-TTTTACATCTA--CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCT--ATAA-TAC-ATGTATTTTATTTCCCCCCTTCTACCCTAGA-CTTGATCTGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATTCATGAAATAGTTT-TATATATACTT-CTAGTGCAGTTAGGAGAGAT--GAGAGAGAAAT-ACGA-GTTGATTTTT-GCACTGATTACTCGTCCTACCAG--ACGTTAATTA---GA--TAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AATCGCTCCTTTGAAAA-CAA-TAA-TTAGTGAGCCAAA-CACAATAA--ATGCGTAACTTGCAGTGCGCA-T-ACGTT-----TGTAGATTTAGTGTAGTTTT--TA--TGCTAG-CGTT------TTTG-TATACATTATTTGT-ATT---T-GTAAACCCTTTCGTT-TGTCCTGAGAAAGGGACAGGTCG-TCCCG-AAAAA----AAAATTAATAGTTTAAAATTGTTCGTGTC-GTTGGTCATTTT-AAA-TAGTGCTTTTTGTAATTCTT-ATTTT--------ATTCTATTTAC-TTAAATTTATTTCT
gi|11 : tTACTGGTTTACAGGACTGTGTACT--GGTCCAGTTTTCAAAC--GCA-TTT--CATGCACCC-TTCA-TGCCAGCATGATTCATTTACATTTGAATCTGA
gi|3 : taatttacgaaaccacaACTCATCCTACCCGAGA--TCAATTATGCATGGTAGA-TCAGCCCTTTGGAC-GA-ATAGATCATCTCCT-AATTCGCTACGT---AAAACCATTGAAT-AGCAAGCCAAAACACTAAAC--ATG--CAATTTGCAACGTTAATTCATG-TAACTCTGTAGATTTAGATTAGTTTTAGTAACTGTT--TTGTTTTAACATTTCGTATA-CCT-TTGGTCATCTCAT-GTAAACCTTTTTGTT-TGTCCTGAAGAAAGGAAAGGGCGTTCC-----------------TAATA-TTT--AATTGTTCGT-GTTGTTGGTCAtaac
gi|6 : aatataattagttaAGCAAACCAAA-AAGAATAACCATG--CAATTTGCAATGTATAAT-ACT-T-----TGTAGATTAAA-----------------------GCT------TTT--TATA-ACTACTTTC-CTT---TCGTAAAACT-TTC-TTTTGTCCTGAGGAAGGGACAAATCG-TCCCGAAAAA
gi|17 : CCTGAGAAAGGGATGGATCGTCCC---AATGACTCTAGAATT--TA-TCT--AATTGTTCGTGTC-GTTGATCATACTAAtttaacaatacatttattcgtgtcgtatagacaatttcacaatcgcatatgttata
gi|5 : TGTT-AT-TAAGTGCGATATTTTAAAACTAATGA-------AAATCTCAATTTTCAATAGATATTTTATTTACTT-AGATTAATCTCT-----------AATACATTTTTATT-ATATCTTTGTT--TT------CTTTTTA-CTGTG-TTTC--CAAG---ATGTC-AT---TT-ATTATATACAG-TAAT-ACCC-TGTGACTCTGGTTTTTACAC-TGAATAAA-TCAtgtt
gi|7 : ataggtattgaatcaATTTC--------ATTTTATTTACTT-AAAGTTAGCTCTTGAGTCTTCATGCA---TTTTTATTTATC-ATGCGG-AGT-------TTTTTTA-ACGTGCTTTT-CCAGATGGCTATCTAT---TTT--TATATAT------T-GCC-TTGTGACTTG-GTTTTTAC-C-TGAATAAA-TCATcatcatatcatca
gi|9 : agatATTTT--------ATTCTATTTACCT-AAATTTATCTCGT-------CAAACA---TTTTTATTTATC-ATGTGTT--TCTTTTTGTTTTTTA-CTGTG-TC----CA-A---ATGTAGA-----TCATTATATACAG-TATT-GCCC-TGTGACaatc
gi|12 : agatctcaatttcaatagatTTATGTGTATA-ATGTGTT-GTC------TCTTTTA-CTGAG-TTTTTACATA----TATCTAT---TT-ATTATATACAGT--GTTGCCCA-GTGACTTG-GTTTTTAC-C-TGAATAAA-TCAT
gi|16 : TT------TTTTTTAACTGTACTTTT-CCAGA----TGTCTATCTATTCATTATACAT------T-GCCCT-GTGACTAG-GTTTTTAC-C-CGAATAAA-TCATatcatatcat
gi|18 : ttT-GCCCC-GTGACTTG-GTTTTTAC-CCTGAATAAATTCA-TTATCatcacatcat
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): GTTTGTCTTGAAGAAGGAACGCACCGTCCCTTGGATTTATCGAATTGTTCGTGTCGTTGGTCACATCGGTGTATTATGGTGTTTTTTTATTGATTTTGTATCCACTGCATGTGTGGATCCAACACTCCTAGATATCGGGTATTGTTGA
Unaligned ( gi|10 ): TGGTTATCCTTAGGTATTGATCAATGTTATTAAGGTGCAATATTTCAAAATTAATCAAATCTCAATTTTCAATAGATATTTTATTTACTTAAATTTACCTCTTCATACATTTTTATTTATCATG
Unaligned ( gi|13 ): TCCTGGGATTTATCTAAATTTTATTTGTGCCATTGGTCACTTTAGTGCTTGTATCTACATGTAGATCCAACACTACTAGGTACCAGGTGTTGTTGGAATT
Unaligned ( gi|14 ): GTTATCCTTAGGTATTGATCAATGTAATTAAGGTGCAAAATCTCAAAATTAATGAAGATTTCAATTTTCAATAGATATTTATTTTATTTACTTAAATTT
Unaligned ( gi|15 ): TATCCTTAGGTATTGATCAATGTTATTAATGTGCAATATTTTAAAATTAAGATCTCAATAGATATTTCATTTTATTTACTTAAATTTATCTCTTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 2 2 2 333 1 2 2 2 2 2 2 1 1 11 333 222 11 1 1 4444444 1 11 11 1 333 2 1 22 2 2 2 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 2 22 2 2 2 111 66666666 1 1 11 11111 22222 2222 2222222 666666666666666666666 2222 1 1 666666666666666666 1 55555555555555555555555 1 2222222 44444444 11 11111 111 2222222222 1 111111111 111 1 3333333
lowQualScore : 0 0 2 0 0 555 5 0 0 0 0 3 0 0 5 5 7 44 000 777 6 1 1 7 00 0 2 3 2 0 3333333 0 33 22 0 777 3 0 5 77 0 0 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 0 2 77 0 0 0 999 6 0 66666666 7 1 0 7 6 0 1 1 3 4 1 1 7 7 1 11 7 8 88888 11111 2 22 4444 6666666 555555555555555555555 4444 0 3 0 000000000000000000 2 0 8 0 7 33333333333333333333333 3 99 99 6 7 0 3333333 1 77 11111111 5 55 44444 888 8 6 1 4444444444 7 444444444 3 111 7 5555555 5 6 6 6 6 6 0
lowQualScore : . . . . . ... . . . . . . . . . . . .. ... ... . . . . .. . . . . . ....... . .. .. . ... . . . .. . . . ......................................................................................... . . . .. . . . ... . . ........ . . . . . . . . . . . . . . . .. . . ..... ..... . .. .... ....... ..................... .... . . . .................. . . . . . ....................... . .. .. . . . ....... . .. ........ . .. ..... ... . . . .......... . ......... . ... . ....... . . . . . . .
lowQualScore : 0 0 5 0 0 000 0 0 0 0 0 0 0 0 0 5 3 77 000 333 7 0 0 3 66 8 5 2 5 0 2222222 0 22 55 0 333 7 7 5 55 0 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 5 55 0 0 0 777 7 7 77777777 3 0 7 3 7 7 0 0 3 0 0 0 3 3 0 00 3 8 55555 55555 0 00 8888 0000000 888888888888888888888 8888 0 2 0 888888888888888888 5 8 0 7 3 55555555555555555555555 3 22 22 7 8 7 3333333 0 00 44444444 7 77 33333 999 0 7 0 5555555555 7 777777777 2 777 7 9999999 7 7 7 7 7 7 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTTGGTATACACAGGATGAAGTCATTCAACNCTACAAATGTATCAACCCCAAACTTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAGAATTCTGAGCTTCATCTACTTGTTTGATCNTGTGTCTTAACACTTACAACCGTATTACCCATTTTATTTCTTGGGCTT-AATCCTGTTTACTAA-GTTTCCACATGCTAATTTACTACATTATACATGTTACTGGTTTNCAAGACTGTGTACTTAGT-CCAGTTTTC---CT-ACA-TTT-ACATCTACC-TTCG-TGCCAAAATAATCCATT---ATTTGA-TTTGACCGTTATCTTACATCTTATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGACG--------CGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCAATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCANTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-GAGACGTTAATTA-T----GGTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT-AA-TCGCTCCTTTGAAAAACAATTGAATTAGCGAGCCAAACACAATAA--A--TG--C--AACTTGCAGTGCGCA-TT-ACGT-----T-GTAGATTTAG--TGTAGTTTTNATGCTAG-CGTTTT-TG-TATA-ACTATTT-GTAT-------------T--T-GTAAANCCTTTCGTT-TGTCCTGAGGAAGGGACGGGTCGTTCCCGAAAA----A----AGAA-TTAATA-TTT--AA--TTGTTCGTGTC-GTTGGTCATTTTAAAACTAATGNTTTTTGTAAATCTCAATTTT--------ATTCTATTTAC-TTAAATTTA--TCT-----CTTC-ATACA-TTTTTATT-TATCATGTGTT-GTC------TTTTTTACTGTGCTTTTCCAGAATG----TCTAT---TTCATTATATACAGT--G-TGCCC-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATTTATC
Reference ( family-2185 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCT-GG-ATACACAGGATGAAGTCATTCAACGCT-CAA-TGTATCAAC---AAACTTACTGACCTCA-CCGG-GATACCGGCTAAACCATTAA-CAGA-TTCTGAGCTTCATCTACTTGTTTGATCATGTGTCT-AACACT-ACAACCGTATTATCCATTTTATTTCTTGGGCTTTAATCCTGTTTACTAA-GTTTCCACATGCNAATTTANTACATTATACATGTTACTGGTTTNCAAGACTGTGTACTTAGT-CCAGTTTTC---C--GCA-TTT-ACATCTACC-TTCG-TGCCAAAATAATCCATTTACATTTGAATCTGACCGTTATCTTACATCTTATATCTGTTATTCT--ATAA-TAC-ATGTATTTTATTTCCCCCCTTCTACCCTAGA-CTTGATCTGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATTCATGAAATAGTTT-TATATATACTT-CTAGTGCAGTTAGGAGAGAT--GAGAGAGAAAT-ACGA-GTTGATTTTT-GCACTGATTACTCGTCCTACCNGAGACGTCAATTA-TGCGNGGTAGAATCAGCCNCTTGGACAGAGATAGGNCGTNTCCT-AANTCGCTNCNTTGAAAAACNATTGAATTAGCGAGCCAAACACAATAA--A--TG--C--AATTTGCAACGTNNA-T--ACGT-----T-GTAGATTTAG--T--AGTTTTTATGCT---CGTTTT-T--TATA-ACTATTT-GTAT-------------T--T-GTAAACCTTTTCGTT-TGTCCTGAGGAAGGGACGGGTCGTTCCCGAAAA----A----AGAA-TTAATA-TTT--AA--TTGTTCGTGTC-GTTGGTCATTTTAAAACTAGTGNTTTTTGTAANTCTCAATTTT--------ATTCTATTTAC-TTAAATTTA--TCT-----CTTC-A-ACA-TTTTTATT-TATNATGTGTT-GTC------TTTTTTACTGTGCTTTTCCAGAATG----TCTAT---TTCATTATATACAGT--A-TGCCC-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATTTATC
gi|1 : AATTCTTGGTATACACAGGATGAAGTCATTCAACCCTACAAATGTATCAACCCCAAA-TTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAAAATTCTGAGCTTCATCTACTTGTTTGATTCTGTGTCTTAACACTTACAAC-GTAT-ACCCATTT-ATTTCTTGGGCT--AATCCTGTTTACTTATGTTTCCACATGCTAATTTACTACATT-TACCTGTTACTGGTTT-CAAGACT-TGTACTTAGTTCCAGTTTTC---CTTACA-TTT-ACATCTAC--TTCGCTGCCAAAATAATCCATT---ATTTGA-TTTGACCGTTATCTTACATCT-ATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGAC---------CGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCAATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCATTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACCAG-GACGTTAATTAAT------TAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCTTAAATCGCTCCTTTGAAAAACAAATAAATTAGTGAGCCAAACACAAGAA--A--TGGTT--AACTTGCAGTGCGCA-TT-ACGT-----T-GTAGATTTAG--TGTAGTTTTCATGCTAGTCGTTTT-TGATATA-ATTATTT-GTAT-------------T--T-GTAAAACCCTTCGTTCTGTCCTGAGAAAGGGACAGGTCGTTCCCGAAAA----A----AAAAATTAATAGTTT--AAAATTGTTCAT-TCAGTTGGTCATTTTAAAA-TAGTGCTTTTTGTAATTCTTAATTTT--------ATTCTATTTACTTTAAATTTATTTCT-----TTTC-A-AAATTTTTTGTT-TATAATGTGTTAGTC------TTTTTTACTGTG-TTTTACAGAATA----TCTAT---TTTATTATATACAGTTAG-TGCCCTTGTGACT-TGAGTTTTTA-C-CTGAATAAA-TCATTTATC
gi|10 : ctaatgttggtcagatacaatagaacgcaaaggaaATTTCAAAATTAAT--------CAAATCTCAATTTTCAATAGATATTTTATTTAC-TTAAATTTA--CCT-----CTTC-ATACA-TTTTTATT-TATCATG
gi|11 : tggttatccttaggtattgatcaatgttattaaggtgcaatTACTGGTTTACAGGACTGTGTACT-GGT-CCAGTTTTCAAAC--GCA-TTT--CATGCACCCTTCA-TGCCAGCATGATTCATTTACATTTGAATCTGA
gi|12 : taatttacgaaaccaca-TATAATGTGTT-GTC------TCTTTTACTGAGTTTTTACAT-ATA----TCTAT---TT-ATTATATACAGT--GTTGCCC-AGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATtaac
gi|15 : ttatgtgATTTTAAAATTAA-GATCTCAATAGAT----ATTTC--------ATTTTATTTAC-TTAAATTTA--TCT-----CTTC-atcatatcat
gi|16 : tatccttaggtattgatcaatgttattaatgtgcaatTT-TTT------TTTTTAACTGTACTTTTCCAGA-TG----TCTATCTATTCATTATACAT-------TGCCC-TGTGACT-AG-GTTTTTA-C-CCGAATAAA-TCAT
gi|17 : CCTGAGAAAGGGATGGATCGTCCC--AATG----ACTCTAGAA-TT--TA-TCT--AA--TTGTTCGTGTC-GTTGATCAT------ACTAATGTTatcacatcat
gi|18 : -TGCCC-CGTGACT-TG-GTTTTTACC-CTGAATAAATTCA-TTATC
gi|2 : tTTTTATTTCT-GGGCTT-AATCCTGTTTACTA--GTTTC-ACATGCTAATTTACTACATTATACATGT-ACTGGTTTTCAAGACTGTGTACTTAGT-CCAGTTTTC---CT-ACA-TTTTACATCTACC-TTCG-TGCCAAAATAATCCATT---ATTTGA-TTTGACCGTTATCTTACATCTTATATCTGTTATTCT--ATAA-TAC-ATGTATTTTATTTCCCCCCTTCTACCCTAGA-CTTGATCTGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATTCATGAAATAGTTT-TATATATACTT-CTAGTGCAGTTAGGAGAGAT--GAGAGAGAAAT-ACGA-GTTGATTTTT-GCACTGATTACTCGTCCTACC--AGACGTTAATTA------GATAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT-AA-TCGCTCCTTTGAAAA-CAAT--AATTAGTGAGCCAAACACAATAA--A--TG--CGTAACTTGCAGTGCGCA-T--ACGT-----TTGTAGATTTAG--TGTAGTTTTTATGCTAG-CGTTTT-TG-TATACATTATTT-GTAT-------------T--T-GTAAACCCTTTCGTT-TGTCCTGAGAAAGGGACAGGTCG-TCCCGAAAA----A----AAAA-TTAATAGTTTAAAA--TTGTTCGTGTC-GTTGGTCATTTTAAA--TAGTGCTTTTTGTAATTCTT-ATTTT--------ATTCTATTTAC-TTAAATTTA--TTT-----CTattcatatcata
gi|3 : ACTCATCCTACCCGAGA--TCAATTA-TGCATGGTAGA-TCAGCCCTTTGGAC-GA-ATAGATCATCTCCT-AATTCGCTACGT---AAAACCATTGAAT-AGCAAGCCAAA-ACACTAA--ACATG--C--AATTTGCAACGTTAA-TTCATGTAACTCT-GTAGATTTAGATT--AGTTTTAGTAAC---TGTTTTGT--TTTA-AC-ATTTCGTATACCTTTGGTCATCTCAT-GTAAACCTTTTTGTT-TGTCCTGAAGAAAGGAAAGGGCGTTCC---------------------TAATA-TTT--AA--TTGTTCGTGTT-GTTGGTCA
gi|4 : aatataattagttaAATTCT-GG-ATACACAGGATGAAGTCATTCAACGCT-CAA-TGTATCAAC---AAACTTACTGACCTCA-CCGG-GATACCGGCTAAACCATTAA-CAGA-TTCTGAGCTTCATCTACTTGTTTGATCATGTGTCT-AACACT-ACAACCGTATTATCCATTTTATTTC-TGGGC-TTAATCCTGTTTACTAA---TTTCACATGCAAATTTAGTACATTATACATG-TACTGGTTTCCAAGACTGTGTACTTA-T-CTAGTTTTC---CT-ACACTTT-ACATCTACC-TTCG-TGCCAAAATAATC
gi|5 : ATTTTAAAACTAATGA-------AAATCTCAATTTTCAATAGATATTTTATTTAC-TTAGATTAA--TCT-----CTAA-T-ACA-TTTTTATTATATC-TTTGTT-TTC-------TTTTTACTGTG--TTTCCAAGATG----TC-AT---TT-ATTATATACAGTA-A-TACCC-TGTGACTCTG-GTTTTTA-CACTGAATAAA-TCA
gi|6 : ataggtattgaatcatgttattaagtgcgatAGCAAACCAAAAAGAATAACCA--TG--C--AATTTGCAATGTATAAT--ACTT-----T-GTAGATTAAA---------------------GCTTT-T--TATA-ACTACTT-TCCT-------------T--TCGTAAAAC-TTTCTTT-TGTCCTGAGGAAGGGACAAATCG-TCCCGAAAAATTTA----ACAA-T--ACA-TTT--A------TTCGTGTC-GTcatcatatcatca
gi|7 : ATTTC--------ATTTTATTTAC-TTAAAGTTAGCTCTTGAGTCTTC-ATGCA-TTTTTATT-TATCATGCGGA-GT-------TTTTTTAACGTGCTTTTCCAGA-TGGCTATCTAT---TT--TTATATAT-------TGCCT-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATatagacaatttcacaatcgcatatgttata
gi|8 : agatGTT-TGTCTTGAAGAAGGAACGCACCGTCCCTT--------------GGA-TT--TA-TCG--AA--TTGTTCGTGTC-GTTGGTCAaatc
gi|9 : ATTTT--------ATTCTATTTAC-CTAAATTTA--TCT-----CGTCAA-ACA-TTTTTATT-TATCATGTGTT--TCTTTTTGTTTTTTACTGTG----TCCA-AATG----TAGA-----TCATTATATACAGT--ATTGCCC-TGTGACcatcggtgtattatggtgtttttttattgattttgtatccactgcatgtgtggatccaacactcctagatatcgggtattgttga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCCTGGGATTTATCTAAATTTTATTTGTGCCATTGGTCACTTTAGTGCTTGTATCTACATGTAGATCCAACACTACTAGGTACCAGGTGTTGTTGGAATT
Unaligned ( gi|14 ): GTTATCCTTAGGTATTGATCAATGTAATTAAGGTGCAAAATCTCAAAATTAATGAAGATTTCAATTTTCAATAGATATTTATTTTATTTACTTAAATTT
Alignments
lowQualScore : 1 1 1 1 222 1 1 1 1 1 1 1 1 1 2 222 1 1 1 1111 1 11 1 1 222 1 1 11 1 1 1 1 77777777 1 1 11 1 1 1 22 5555555 11 1 222 11 11111 22222 111 2222222 5555555555555555 1 111 1 1 222 555555555555555555 1 1 11 2222222 44444444 11 11111 2222222222 1 111111111 111 1 3333333
lowQualScore : 5 5 1 5 5 000 5 5 5 5 5 1 5 5 5 5 7 3 7 777 6 3 55 5 0 2 3 2 0 4444 0 33 0 2 0 333 3 5 88 5 5 5 5 22222222 5 5 1 88 5 5 5 55 6 1111111 7 7 6 88 3 111 11 7 8 88888 11111 00 000 6666666 888 0000000000000000 0 6 555 0 3 0 777 1 6 8 0 7 555555555555555555 1 3 88 6 7 3333333 1 77 11111111 5 55 44444 1 1 6 4444444444 7 444444444 3 111 7 5555555 5 6 6 6 6 6 0
lowQualScore : . . . . . ... . . . . . . . . . . . . . ... . . .. . . . . . . .... . .. . . . ... . . .. . . . . ........ . . . .. . . . .. . ....... . . . .. . ... .. . . ..... ..... .. ... ....... ... ................ . . ... . . . ... . . . . . .................. . . .. . . ....... . .. ........ . .. ..... . . . .......... . ......... . ... . ....... . . . . . . .
lowQualScore : 5 5 0 5 5 000 0 5 5 5 5 0 5 5 0 5 3 7 3 333 7 2 55 5 8 5 2 5 0 8888 0 22 0 5 0 333 3 5 55 5 0 5 0 55555555 0 5 0 00 5 5 5 33 7 0000000 3 3 7 33 3 000 00 3 8 55555 55555 55 888 0000000 555 2222222222222222 0 5 888 0 2 0 555 0 5 0 7 3 555555555555555555 3 3 33 7 8 3333333 4 00 44444444 7 77 33333 4 4 7 5555555555 7 777777777 2 777 7 6666666 7 7 7 7 7 7 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTTGGTATACACAGGATGAAGTCATTCAACNCTACAAATGTATCAACCCCAAACTTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAGAATTCTGAGCTTCATCTACTTGTTTGATCNTGTGTCTTAACACTTACAACCGTATTACCCATTTTATTTCT-GGGCTTAATCCTGTTTACTAA-GTTTCCACATGCTAATTTACTACATTATACATGTTACTGGTTTNCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTT-ACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGACGCGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCANTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-GAGACGTTAATTA-G----NTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTG-AAAACAATTGAATTAGCGAGCCAAACACAATAA--A--TG--C--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTNATG-----------CTAG-CGTTTTTG-TATA-ACTATTTGT-ATTTC--GTAAANCCTTTCGTT-TGTCCTGAGGAAGGGACGGGTCGTTCCCG-AAAA----A----AGAATTAATA-TTT--AATTGTTCGTGTC-GTTGGTCATTTTAAAACTAATGNTTTTTGTAAATCTCAATTTT--------ATTCTATTTAC-TTAAATTTA--TCT-----CTTCATACATTTTTATT-TATCATGTGTT-GTC------TTTTTTACTGTGCTTTTCCAGAATG----TCTAT---TTCATTATATACAGT--G-TGCCC-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATTTATC
Reference ( family-2185 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTTGGTATACACAGGATGAAGTCATTCAACNCTACAAATGTATCAACCCCAAACTTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAGAATTCTGAGCTTCATCTACTTGTTTGATCNTGTGTCTTAACACTTACAACCGTATTACCCATTTTATTTCTTGGGCTTAATCCTGTTTACTAA-GTTTCCACATGCTAATTTACTACATTATACATGTTACTGGTTTNCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTT-ACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGACGCGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCANTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-GAGACGTTAATTATG----GTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTGAAAAACAATTGAATTAGCGAGCCAAACACAATAA--A--TG--C--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTNATG-----------CTAG-CGTTTTTG-TATA-ACTATTTGT-ATTT---GTAAANCCTTTCGTT-TGTCCTGAGGAAGGGACGGGTCGTTCCCG-AAAA----A----AGAATTAATA-TTT--AATTGTTCGTGTC-GTTGGTCATTTTAAAACTAATGNTTTTTGTAAATCTCAATTTT--------ATTCTATTTAC-TTAAATTTA--TCT-----CTTCATACATTTTTATT-TATCATGTGTT-GTC------TTTTTTACTGTGCTTTTCCAGAATG----TCTAT---TTCATTATATACAGT--G-TGCCC-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATTTATC
gi|1 : AATTCTTGGTATACACAGGATGAAGTCATTCAACCCTACAAATGTATCAACCCCAAA-TTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAAAATTCTGAGCTTCATCTACTTGTTTGATTCTGTGTCTTAACACTTACAAC-GTAT-ACCCATTT-ATTTCTTGGGCT-AATCCTGTTTACTTATGTTTCCACATGCTAATTTACTACATT-TACCTGTTACTGGTTT-CAAGACT-TGTACTTAGTTCCAGTTTTCCTTA--CA-TTT-ACATCTA-C-TTCGCTGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCT-ATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGAC-CGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCATTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-AGGACGTTAATTA-A----TTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCTTAAAT-CGCTCCTTTGAAAAACAAATAAATTAGTGAGCCAAACACAAGAA--A--TGGTT--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTCATG-----------CTAGTCGTTTTTGATATA-ATTATTTGT-ATTT---GTAAAACCCTTCGTTCTGTCCTGAGAAAGGGACAGGTCGTTCCCGAAAAA----A----AAAATTAATAGTTTAAAATTGTTCAT-TCAGTTGGTCATTTTAAAA-TAGTGCTTTTTGTAATTCTTAATTTT--------ATTCTATTTACTTTAAATTTATTTCT-----TTTCAAAATTTTTTGTT-TATAATGTGTTAGTC------TTTTTTACTGTG-TTTTACAGAATA----TCTAT---TTTATTATATACAGTTAG-TGCCCTTGTGACT-TGAGTTTTTA-C-CTGAATAAA-TCATTTATC
gi|10 : ctaatgttggtcagatacaatagaacgcaaaggaaATTTCAAAATTAAT--------CAAATCTCAATTTTCAATAGATATTTTATTTAC-TTAAATTTA--CCT-----CTTCATACATTTTTATT-TATCATG
gi|11 : tggttatccttaggtattgatcaatgttattaaggtgcaatTAATTTACGAAACCACA-----TACTGGTTTACAGGACTGTGTAC-TGGT-CCAGTTTTCAA-ACGCA-TTT--CATGCACCCTTCA-TGCCAGCATGATTCATTTACATTTGAATCTGA
gi|12 : -TATAATGTGTT-GTC------TCTTTTACTGAGTTTTTACAT-ATA----TCTAT---TT-ATTATATACAGT--GTTGCCC-AGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATtaac
gi|15 : ttatgtgATTTTAAAATTAA-GATCTCAATAGAT----ATTTC--------ATTTTATTTAC-TTAAATTTA--TCT-----CTTCatcatatcat
gi|16 : tatccttaggtattgatcaatgttattaatgtgcaatTT-TTT------TTTTTAACTGTACTTTTCCAGA-TG----TCTATCTATTCATTATACAT-------TGCCC-TGTGACT-AG-GTTTTTA-C-CCGAATAAA-TCAT
gi|17 : CCTGAGAAAGGGATGGATCGTCCC---AATG----ACTCTAGAATT--TA-TCT--AATTGTTCGTGTC-GTTGATCAT------ACTAATGTTatcacatcat
gi|18 : -TGCCC-CGTGACT-TG-GTTTTTACC-CTGAATAAATTCA-TTATC
gi|2 : tTTTTATTTCT-GGGCTTAATCCTGTTTACTA--GTTTC-ACATGCTAATTTACTACATTATACATGT-ACTGGTTTTCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTTTACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCT--ATAA-TAC-ATGTATTTTATTTCCCCCCTTCTACCCTAGA-CTTGATCTGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATTCATGAAATAGTTT-TATATATACTT-CTAGTGCAGTTAGGAGAGAT--GAGAGAGAAAT-ACGA-GTTGATTTTT-GCACTGATTACTCGTCCTACC--AGACGTTAATTA-G----ATAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTG-AAAACAAT--AATTAGTGAGCCAAACACAATAA--A--TG--CGTAACTTGCAGTGCGCA-T-ACGTT-----TGTAGATTTAGTGTAGTTTTTATG-----------CTAG-CGTTTTTG-TATACATTATTTGT-ATTT---GTAAACCCTTTCGTT-TGTCCTGAGAAAGGGACAGGTCG-TCCCG-AAAA----A----AAAATTAATAGTTTAAAATTGTTCGTGTC-GTTGGTCATTTTAAA--TAGTGCTTTTTGTAATTCTT-ATTTT--------ATTCTATTTAC-TTAAATTTA--TTT-----CTattcatatcata
gi|3 : ACTCATCCTACCCGAGA--TCAATTATGCATGGTAGA-TCAGCCCTTTGGAC-GA-ATAGATCATCTCCT--AATTCGCTACGT---AAAACCATTGAAT-AGCAAGCCAAA-ACACTAA--ACATG--C--AATTTGCAACGTTAATTCATG-TAACTCTGTAGATTTAGATTAGTTTTAGTAACTGTTTTGTTTTAA-CATTTC-G-TATA-CCT-TTGGTCATCTCATGTAAACCTTTTTGTT-TGTCCTGAAGAAAGGAAAGGGCGTTCC---------------------TAATA-TTT--AATTGTTCGTGTT-GTTGGTCA
gi|4 : aatataattagttaAATTCT-GG-ATACACAGGATGAAGTCATTCAACGCT-CAA-TGTATCAAC---AAACTTACTGACCTCA-CCGG-GATACCGGCTAAACCATTAA-CAGA-TTCTGAGCTTCATCTACTTGTTTGATCATGTGTCT-AACACT-ACAACCGTATTATCCATTTTATTTCT-GGGCTTAATCCTGTTTACTAA---TTTCACATGCAAATTTAGTACATTATACATGT-ACTGGTTTCCAAGACTGTGTACTTA-T-CTAGTTTTCCT-A--CACTTT-ACATCTA-CCTTCG-TGCCAAAATAATC
gi|5 : ATTTTAAAACTAATGA-------AAATCTCAATTTTCAATAGATATTTTATTTAC-TTAGATTAA--TCT-----C-TAATACATTTTTATTATATC-TTTGTT-TTC-------TTTTTACTGTG--TTTCCAAGATG----TC-AT---TT-ATTATATACAGTA-A-TACCC-TGTGACTCTG-GTTTTTA-CACTGAATAAA-TCA
gi|6 : ataggtattgaatcatgttattaagtgcgatAGCAAACCAAAAAGAATAACCA--TG--C--AATTTGCAATGTATAAT-ACT-T-----TGTAGATTAA---------------------------AG-C--TTTT--TATA-ACTACTTTC-CTTTC--GTAAAAC-TTTCTTT-TGTCCTGAGGAAGGGACAAATCG-TCCCG-AAAAATTTA----ACAAT--ACA-TTT--A----TTCGTGTC-GTcatcatatcatca
gi|7 : ATTTC--------ATTTTATTTAC-TTAAAGTTAGCTCTTGAGTCTTCATGCATTTTTATT-TATCATGCGGA-GT-------TTTTTTAACGTGCTTTTCCAGA-TGGCTATCTAT---TT--TTATATAT-------TGCCT-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATatagacaatttcacaatcgcatatgttata
gi|8 : agatGTT-TGTCTTGAAGAAGGAACGCACCGTCCCTT---------------GGATT--TA-TCG--AATTGTTCGTGTC-GTTGGTCAaatc
gi|9 : ATTTT--------ATTCTATTTAC-CTAAATTTA--TCT-----CGTCAAACATTTTTATT-TATCATGTGTT--TCTTTTTGTTTTTTACTGTG----TCCA-AATG----TAGA-----TCATTATATACAGT--ATTGCCC-TGTGACcatcggtgtattatggtgtttttttattgattttgtatccactgcatgtgtggatccaacactcctagatatcgggtattgttga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCCTGGGATTTATCTAAATTTTATTTGTGCCATTGGTCACTTTAGTGCTTGTATCTACATGTAGATCCAACACTACTAGGTACCAGGTGTTGTTGGAATT
Unaligned ( gi|14 ): GTTATCCTTAGGTATTGATCAATGTAATTAAGGTGCAAAATCTCAAAATTAATGAAGATTTCAATTTTCAATAGATATTTATTTTATTTACTTAAATTT
Alignments
lowQualScore : 1 1 1 1 222 1 1 1 1 1 1 1 1 1 1 222 11 1 1 1111 1 11 1 1 222 1 1 11 1 1 1 1 77777777 1 1 11 1 1 1 22 33333 11 1 111 11 11111 22222 111 2222222 5555555555555555 1 111 1 1 222 555555555555555555 1 1 11 2222222 44444444 11 11111 2222222222 1 111111111 111 1 3333333
lowQualScore : 5 5 1 5 5 000 5 5 5 5 5 1 5 5 5 5 7 3 7 777 6 3 55 22 0 2 3 2 0 4444 0 33 0 2 0 333 3 5 88 5 5 5 5 22222222 5 5 1 88 5 5 5 55 6 33333 1 7 7 6 88 3 999 11 7 8 88888 11111 00 000 6666666 888 0000000000000000 0 6 555 0 3 0 888 1 6 8 0 7 555555555555555555 1 3 88 6 7 3333333 1 77 11111111 5 55 44444 1 1 6 4444444444 7 444444444 3 111 7 5555555 5 6 6 6 6 6 0
lowQualScore : . . . . . ... . . . . . . . . . . . . . ... . . .. .. . . . . . .... . .. . . . ... . . .. . . . . ........ . . . .. . . . .. . ..... . . . . .. . ... .. . . ..... ..... .. ... ....... ... ................ . . ... . . . ... . . . . . .................. . . .. . . ....... . .. ........ . .. ..... . . . .......... . ......... . ... . ....... . . . . . . .
lowQualScore : 5 5 0 5 5 000 0 5 5 5 5 0 5 5 0 5 3 3 3 333 7 2 55 55 8 5 2 5 0 8888 0 22 0 5 0 333 3 5 55 5 0 5 0 55555555 0 5 0 00 5 5 5 33 7 33333 0 3 3 7 33 3 000 00 3 8 55555 55555 55 888 0000000 555 2222222222222222 0 5 888 0 2 0 888 0 5 0 7 3 555555555555555555 3 3 33 7 8 3333333 4 00 44444444 7 77 33333 4 4 7 5555555555 7 777777777 2 777 7 6666666 7 7 7 7 7 7 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTTGGTATACACAGGATGAAGTCATTCAACNCTACAAATGTATCAACCCCAAACTTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAGAATTCTGAGCTTCATCTACTTGTTTGATCNTGTGTCTTAACACTTACAACCGTATTACCCATTTTATTTCT-GGGCTTAATCCTGTTTACTAA-GTTTCCACATGCTAATTTACTACATTATACATGTTACTGGTTTNCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTT-ACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGACGCGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCANTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-GAGACGTTAATTA-----GNTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTG-AAAACAATTGAATTAGCGAGCCAAACACAATAA--A--TG--C--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTNATG-----------CTAG-CGTTTTTG-TATA-ACTATTTGT-ATTTC--GTAAANCCTTTCGTT-TGTCCTGAGGAAGGGACGGGTCGTTCCCG-AAAA----A----AGAATTAATA-TTT--AATTGTTCGTGTC-GTTGGTCATTTTAAAACTAATGNTTTTTGTAAATCTCAATTTT--------ATTCTATTTAC-TTAAATTTA--TCT-----CTTCATACATTTTTATT-TATCATGTGTT-GTC------TTTTTTACTGTGCTTTTCCAGAATG----TCTAT---TTCATTATATACAGT--G-TGCCC-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATTTATC
Reference ( family-2185 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTTGGTATACACAGGATGAAGTCATTCAACNCTACAAATGTATCAACCCCAAACTTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAGAATTCTGAGCTTCATCTACTTGTTTGATCNTGTGTCTTAACACTTACAACCGTATTACCCATTTTATTTCT-GGGCTTAATCCTGTTTACTAA-GTTTCCACATGCTAATTTACTACATTATACATGTTACTGGTTTNCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTT-ACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGACGCGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCANTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-GAGACGTTAATTA-----GNTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTG-AAAACAATTGAATTAGCGAGCCAAACACAATAA--A--TG--C--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTNATG-----------CTAG-CGTTTTTG-TATA-ACTATTTGT-ATTTC--GTAAANCCTTTCGTT-TGTCCTGAGGAAGGGACGGGTCGTTCCCG-AAAA----A----AGAATTAATA-TTT--AATTGTTCGTGTC-GTTGGTCATTTTAAAACTAATGNTTTTTGTAAATCTCAATTTT--------ATTCTATTTAC-TTAAATTTA--TCT-----CTTCATACATTTTTATT-TATCATGTGTT-GTC------TTTTTTACTGTGCTTTTCCAGAATG----TCTAT---TTCATTATATACAGT--G-TGCCC-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATTTATC
gi|1 : AATTCTTGGTATACACAGGATGAAGTCATTCAACCCTACAAATGTATCAACCCCAAA-TTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAAAATTCTGAGCTTCATCTACTTGTTTGATTCTGTGTCTTAACACTTACAAC-GTAT-ACCCATTT-ATTTCTTGGGCT-AATCCTGTTTACTTATGTTTCCACATGCTAATTTACTACATT-TACCTGTTACTGGTTT-CAAGACT-TGTACTTAGTTCCAGTTTTCCTTA--CA-TTT-ACATCTA-C-TTCGCTGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCT-ATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGAC-CGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCATTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-AGGACGTTAATTA-----ATTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCTTAAAT-CGCTCCTTTGAAAAACAAATAAATTAGTGAGCCAAACACAAGAA--A--TGGTT--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTCATG-----------CTAGTCGTTTTTGATATA-ATTATTTGT-ATTT---GTAAAACCCTTCGTTCTGTCCTGAGAAAGGGACAGGTCGTTCCCGAAAAA----A----AAAATTAATAGTTTAAAATTGTTCAT-TCAGTTGGTCATTTTAAAA-TAGTGCTTTTTGTAATTCTTAATTTT--------ATTCTATTTACTTTAAATTTATTTCT-----TTTCAAAATTTTTTGTT-TATAATGTGTTAGTC------TTTTTTACTGTG-TTTTACAGAATA----TCTAT---TTTATTATATACAGTTAG-TGCCCTTGTGACT-TGAGTTTTTA-C-CTGAATAAA-TCATTTATC
gi|10 : ctaatgttggtcagatacaatagaacgcaaaggaaATTTCAAAATTAAT--------CAAATCTCAATTTTCAATAGATATTTTATTTAC-TTAAATTTA--CCT-----CTTCATACATTTTTATT-TATCATG
gi|11 : tggttatccttaggtattgatcaatgttattaaggtgcaatTAATTTACGAAACCACA-----TACTGGTTTACAGGACTGTGTAC-TGGT-CCAGTTTTCAA-ACGCA-TTT--CATGCACCCTTCA-TGCCAGCATGATTCATTTACATTTGAATCTGA
gi|12 : -TATAATGTGTT-GTC------TCTTTTACTGAGTTTTTACAT-ATA----TCTAT---TT-ATTATATACAGT--GTTGCCC-AGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATtaac
gi|15 : ttatgtgATTTTAAAATTAA-GATCTCAATAGAT----ATTTC--------ATTTTATTTAC-TTAAATTTA--TCT-----CTTCatcatatcat
gi|16 : tatccttaggtattgatcaatgttattaatgtgcaatTT-TTT------TTTTTAACTGTACTTTTCCAGA-TG----TCTATCTATTCATTATACAT-------TGCCC-TGTGACT-AG-GTTTTTA-C-CCGAATAAA-TCAT
gi|17 : CCTGAGAAAGGGATGGATCGTCCC---AATG----ACTCTAGAATT--TA-TCT--AATTGTTCGTGTC-GTTGATCAT------ACTAATGTTatcacatcat
gi|18 : -TGCCC-CGTGACT-TG-GTTTTTACC-CTGAATAAATTCA-TTATC
gi|2 : tTTTTATTTCT-GGGCTTAATCCTGTTTACTA--GTTTC-ACATGCTAATTTACTACATTATACATGT-ACTGGTTTTCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTTTACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCT--ATAA-TAC-ATGTATTTTATTTCCCCCCTTCTACCCTAGA-CTTGATCTGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATTCATGAAATAGTTT-TATATATACTT-CTAGTGCAGTTAGGAGAGAT--GAGAGAGAAAT-ACGA-GTTGATTTTT-GCACTGATTACTCGTCCTACC--AGACGTTAATTA-----GATAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTG-AAAACAAT--AATTAGTGAGCCAAACACAATAA--A--TG--CGTAACTTGCAGTGCGCA-T-ACGTT-----TGTAGATTTAGTGTAGTTTTTATG-----------CTAG-CGTTTTTG-TATACATTATTTGT-ATTT---GTAAACCCTTTCGTT-TGTCCTGAGAAAGGGACAGGTCG-TCCCG-AAAA----A----AAAATTAATAGTTTAAAATTGTTCGTGTC-GTTGGTCATTTTAAA--TAGTGCTTTTTGTAATTCTT-ATTTT--------ATTCTATTTAC-TTAAATTTA--TTT-----CTattcatatcata
gi|3 : ACTCATCCTACCCGAGA--TCAATTATGCATGGTAGA-TCAGCCCTTTGGAC-GA-ATAGATCATCTCCT--AATTCGCTACGT---AAAACCATTGAAT-AGCAAGCCAAA-ACACTAA--ACATG--C--AATTTGCAACGTTAATTCATG-TAACTCTGTAGATTTAGATTAGTTTTAGTAACTGTTTTGTTTTAA-CATTTC-G-TATA-CCT-TTGGTCATCTCATGTAAACCTTTTTGTT-TGTCCTGAAGAAAGGAAAGGGCGTTCC---------------------TAATA-TTT--AATTGTTCGTGTT-GTTGGTCA
gi|4 : aatataattagttaAATTCT-GG-ATACACAGGATGAAGTCATTCAACGCT-CAA-TGTATCAAC---AAACTTACTGACCTCA-CCGG-GATACCGGCTAAACCATTAA-CAGA-TTCTGAGCTTCATCTACTTGTTTGATCATGTGTCT-AACACT-ACAACCGTATTATCCATTTTATTTCT-GGGCTTAATCCTGTTTACTAA---TTTCACATGCAAATTTAGTACATTATACATG-TACTGGTTTCCAAGACTGTGTACTTA-T-CTAGTTTTCCT-A--CACTTT-ACATCTA-CCTTCG-TGCCAAAATAATC
gi|5 : ATTTTAAAACTAATGA-------AAATCTCAATTTTCAATAGATATTTTATTTAC-TTAGATTAA--TCT-----C-TAATACATTTTTATTATATC-TTTGTT-TTC-------TTTTTACTGTG--TTTCCAAGATG----TC-AT---TT-ATTATATACAGTA-A-TACCC-TGTGACTCTG-GTTTTTA-CACTGAATAAA-TCA
gi|6 : ataggtattgaatcatgttattaagtgcgatAGCAAACCAAAAAGAATAACCA--TG--C--AATTTGCAATGTATAAT-ACT-T-----TGTAGATTAA---------------------------AG-C--TTTT--TATA-ACTACTTTC-CTTTC--GTAAAAC-TTTCTTT-TGTCCTGAGGAAGGGACAAATCG-TCCCG-AAAAATTTA----ACAAT--ACA-TTT--A----TTCGTGTC-GTcatcatatcatca
gi|7 : ATTTC--------ATTTTATTTAC-TTAAAGTTAGCTCTTGAGTCTTCATGCATTTTTATT-TATCATGCGGA-GT-------TTTTTTAACGTGCTTTTCCAGA-TGGCTATCTAT---TT--TTATATAT-------TGCCT-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATatagacaatttcacaatcgcatatgttata
gi|8 : agatGTT-TGTCTTGAAGAAGGAACGCACCGTCCCTT---------------GGATT--TA-TCG--AATTGTTCGTGTC-GTTGGTCAaatc
gi|9 : ATTTT--------ATTCTATTTAC-CTAAATTTA--TCT-----CGTCAAACATTTTTATT-TATCATGTGTT--TCTTTTTGTTTTTTACTGTG----TCCA-AATG----TAGA-----TCATTATATACAGT--ATTGCCC-TGTGACcatcggtgtattatggtgtttttttattgattttgtatccactgcatgtgtggatccaacactcctagatatcgggtattgttga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCCTGGGATTTATCTAAATTTTATTTGTGCCATTGGTCACTTTAGTGCTTGTATCTACATGTAGATCCAACACTACTAGGTACCAGGTGTTGTTGGAATT
Unaligned ( gi|14 ): GTTATCCTTAGGTATTGATCAATGTAATTAAGGTGCAAAATCTCAAAATTAATGAAGATTTCAATTTTCAATAGATATTTATTTTATTTACTTAAATTT
Alignments
lowQualScore : 1 1 1 1 222 1 1 1 1 1 1 1 1 1 1 222 11 1 1 1111 1 11 1 1 222 1 1 11 1 1 1 1 77777777 1 1 11 1 1 1 22 33333 11 1 111 11 11111 22222 111 2222222 5555555555555555 1 111 1 1 222 555555555555555555 1 1 11 2222222 44444444 11 11111 2222222222 1 111111111 111 1 3333333
lowQualScore : 5 5 1 5 5 000 5 5 5 5 5 1 5 5 5 5 7 3 7 777 6 3 55 22 0 2 3 2 0 4444 0 33 0 2 0 333 3 5 88 5 5 5 5 22222222 5 5 1 88 5 5 5 55 6 33333 1 7 7 6 88 3 999 11 7 8 88888 11111 00 000 6666666 888 0000000000000000 0 6 555 0 3 0 888 1 6 8 0 7 555555555555555555 1 3 88 6 7 3333333 1 77 11111111 5 55 44444 1 1 6 4444444444 7 444444444 3 111 7 5555555 5 6 6 6 6 6 0
lowQualScore : . . . . . ... . . . . . . . . . . . . . ... . . .. .. . . . . . .... . .. . . . ... . . .. . . . . ........ . . . .. . . . .. . ..... . . . . .. . ... .. . . ..... ..... .. ... ....... ... ................ . . ... . . . ... . . . . . .................. . . .. . . ....... . .. ........ . .. ..... . . . .......... . ......... . ... . ....... . . . . . . .
lowQualScore : 5 5 0 5 5 000 0 5 5 5 5 0 5 5 0 5 3 3 3 333 7 2 55 55 8 5 2 5 0 8888 0 22 0 5 0 333 3 5 55 5 0 5 0 55555555 0 5 0 00 5 5 5 33 7 33333 0 3 3 7 33 3 000 00 3 8 55555 55555 55 888 0000000 555 2222222222222222 0 5 888 0 2 0 888 0 5 0 7 3 555555555555555555 3 3 33 7 8 3333333 4 00 44444444 7 77 33333 4 4 7 5555555555 7 777777777 2 777 7 6666666 7 7 7 7 7 7 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTTGGTATACACAGGATGAAGTCATTCAACNCTACAAATGTATCAACCCCAAACTTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAGAATTCTGAGCTTCATCTACTTGTTTGATCNTGTGTCTTAACACTTACAACCGTATTACCCATTTTATTTCT-GGGCTTAATCCTGTTTACTAA-GTTTCCACATGCTAATTTACTACATTATACATGTTACTGGTTTNCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTT-ACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGACGCGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCANTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-GAGACGTTAATTA-----GNTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTG-AAAACAATTGAATTAGCGAGCCAAACACAATAA--A--TG--C--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTNATG-----------CTAG-CGTTTTTG-TATA-ACTATTTGT-ATTTC--GTAAANCCTTTCGTT-TGTCCTGAGGAAGGGACGGGTCGTTCCCG-AAAA----A----AGAATTAATA-TTT--AATTGTTCGTGTC-GTTGGTCATTTTAAAACTAATGNTTTTTGTAAATCTCAATTTT--------ATTCTATTTAC-TTAAATTTA--TCT-----CTTCATACATTTTTATT-TATCATGTGTT-GTC------TTTTTTACTGTGCTTTTCCAGAATG----TCTAT---TTCATTATATACAGT--G-TGCCC-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATTTATC
Reference ( family-2185 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTTGGTATACACAGGATGAAGTCATTCAACNCTACAAATGTATCAACCCCAAACTTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAGAATTCTGAGCTTCATCTACTTGTTTGATCNTGTGTCTTAACACTTACAACCGTATTACCCATTTTATTTCT-GGGCTTAATCCTGTTTACTAA-GTTTCCACATGCTAATTTACTACATTATACATGTTACTGGTTTNCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTT-ACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGACGCGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCANTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-GAGACGTTAATTA-----GNTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTG-AAAACAATTGAATTAGCGAGCCAAACACAATAA--A--TG--C--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTNATG-----------CTAG-CGTTTTTG-TATA-ACTATTTGT-ATTTC--GTAAANCCTTTCGTT-TGTCCTGAGGAAGGGACGGGTCGTTCCCG-AAAA----A----AGAATTAATA-TTT--AATTGTTCGTGTC-GTTGGTCATTTTAAAACTAATGNTTTTTGTAAATCTCAATTTT--------ATTCTATTTAC-TTAAATTTA--TCT-----CTTCATACATTTTTATT-TATCATGTGTT-GTC------TTTTTTACTGTGCTTTTCCAGAATG----TCTAT---TTCATTATATACAGT--G-TGCCC-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATTTATC
gi|1 : AATTCTTGGTATACACAGGATGAAGTCATTCAACCCTACAAATGTATCAACCCCAAA-TTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAAAATTCTGAGCTTCATCTACTTGTTTGATTCTGTGTCTTAACACTTACAAC-GTAT-ACCCATTT-ATTTCTTGGGCT-AATCCTGTTTACTTATGTTTCCACATGCTAATTTACTACATT-TACCTGTTACTGGTTT-CAAGACT-TGTACTTAGTTCCAGTTTTCCTTA--CA-TTT-ACATCTA-C-TTCGCTGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCT-ATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGAC-CGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCATTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-AGGACGTTAATTA-----ATTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCTTAAAT-CGCTCCTTTGAAAAACAAATAAATTAGTGAGCCAAACACAAGAA--A--TGGTT--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTCATG-----------CTAGTCGTTTTTGATATA-ATTATTTGT-ATTT---GTAAAACCCTTCGTTCTGTCCTGAGAAAGGGACAGGTCGTTCCCGAAAAA----A----AAAATTAATAGTTTAAAATTGTTCAT-TCAGTTGGTCATTTTAAAA-TAGTGCTTTTTGTAATTCTTAATTTT--------ATTCTATTTACTTTAAATTTATTTCT-----TTTCAAAATTTTTTGTT-TATAATGTGTTAGTC------TTTTTTACTGTG-TTTTACAGAATA----TCTAT---TTTATTATATACAGTTAG-TGCCCTTGTGACT-TGAGTTTTTA-C-CTGAATAAA-TCATTTATC
gi|10 : ctaatgttggtcagatacaatagaacgcaaaggaaATTTCAAAATTAAT--------CAAATCTCAATTTTCAATAGATATTTTATTTAC-TTAAATTTA--CCT-----CTTCATACATTTTTATT-TATCATG
gi|11 : tggttatccttaggtattgatcaatgttattaaggtgcaatTAATTTACGAAACCACA-----TACTGGTTTACAGGACTGTGTAC-TGGT-CCAGTTTTCAA-ACGCA-TTT--CATGCACCCTTCA-TGCCAGCATGATTCATTTACATTTGAATCTGA
gi|12 : -TATAATGTGTT-GTC------TCTTTTACTGAGTTTTTACAT-ATA----TCTAT---TT-ATTATATACAGT--GTTGCCC-AGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATtaac
gi|15 : ttatgtgATTTTAAAATTAA-GATCTCAATAGAT----ATTTC--------ATTTTATTTAC-TTAAATTTA--TCT-----CTTCatcatatcat
gi|16 : tatccttaggtattgatcaatgttattaatgtgcaatTT-TTT------TTTTTAACTGTACTTTTCCAGA-TG----TCTATCTATTCATTATACAT-------TGCCC-TGTGACT-AG-GTTTTTA-C-CCGAATAAA-TCAT
gi|17 : CCTGAGAAAGGGATGGATCGTCCC---AATG----ACTCTAGAATT--TA-TCT--AATTGTTCGTGTC-GTTGATCAT------ACTAATGTTatcacatcat
gi|18 : -TGCCC-CGTGACT-TG-GTTTTTACC-CTGAATAAATTCA-TTATC
gi|2 : tTTTTATTTCT-GGGCTTAATCCTGTTTACTA--GTTTC-ACATGCTAATTTACTACATTATACATGT-ACTGGTTTTCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTTTACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCT--ATAA-TAC-ATGTATTTTATTTCCCCCCTTCTACCCTAGA-CTTGATCTGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATTCATGAAATAGTTT-TATATATACTT-CTAGTGCAGTTAGGAGAGAT--GAGAGAGAAAT-ACGA-GTTGATTTTT-GCACTGATTACTCGTCCTACC--AGACGTTAATTA-----GATAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTG-AAAACAAT--AATTAGTGAGCCAAACACAATAA--A--TG--CGTAACTTGCAGTGCGCA-T-ACGTT-----TGTAGATTTAGTGTAGTTTTTATG-----------CTAG-CGTTTTTG-TATACATTATTTGT-ATTT---GTAAACCCTTTCGTT-TGTCCTGAGAAAGGGACAGGTCG-TCCCG-AAAA----A----AAAATTAATAGTTTAAAATTGTTCGTGTC-GTTGGTCATTTTAAA--TAGTGCTTTTTGTAATTCTT-ATTTT--------ATTCTATTTAC-TTAAATTTA--TTT-----CTattcatatcata
gi|3 : ACTCATCCTACCCGAGA--TCAATTATGCATGGTAGA-TCAGCCCTTTGGAC-GA-ATAGATCATCTCCT--AATTCGCTACGT---AAAACCATTGAAT-AGCAAGCCAAA-ACACTAA--ACATG--C--AATTTGCAACGTTAATTCATG-TAACTCTGTAGATTTAGATTAGTTTTAGTAACTGTTTTGTTTTAA-CATTTC-G-TATA-CCT-TTGGTCATCTCATGTAAACCTTTTTGTT-TGTCCTGAAGAAAGGAAAGGGCGTTCC---------------------TAATA-TTT--AATTGTTCGTGTT-GTTGGTCA
gi|4 : aatataattagttaAATTCT-GG-ATACACAGGATGAAGTCATTCAACGCT-CAA-TGTATCAAC---AAACTTACTGACCTCA-CCGG-GATACCGGCTAAACCATTAA-CAGA-TTCTGAGCTTCATCTACTTGTTTGATCATGTGTCT-AACACT-ACAACCGTATTATCCATTTTATTTCT-GGGCTTAATCCTGTTTACTAA---TTTCACATGCAAATTTAGTACATTATACATG-TACTGGTTTCCAAGACTGTGTACTTA-T-CTAGTTTTCCT-A--CACTTT-ACATCTA-CCTTCG-TGCCAAAATAATC
gi|5 : ATTTTAAAACTAATGA-------AAATCTCAATTTTCAATAGATATTTTATTTAC-TTAGATTAA--TCT-----C-TAATACATTTTTATTATATC-TTTGTT-TTC-------TTTTTACTGTG--TTTCCAAGATG----TC-AT---TT-ATTATATACAGTA-A-TACCC-TGTGACTCTG-GTTTTTA-CACTGAATAAA-TCA
gi|6 : ataggtattgaatcatgttattaagtgcgatAGCAAACCAAAAAGAATAACCA--TG--C--AATTTGCAATGTATAAT-ACT-T-----TGTAGATTAA---------------------------AG-C--TTTT--TATA-ACTACTTTC-CTTTC--GTAAAAC-TTTCTTT-TGTCCTGAGGAAGGGACAAATCG-TCCCG-AAAAATTTA----ACAAT--ACA-TTT--A----TTCGTGTC-GTcatcatatcatca
gi|7 : ATTTC--------ATTTTATTTAC-TTAAAGTTAGCTCTTGAGTCTTCATGCATTTTTATT-TATCATGCGGA-GT-------TTTTTTAACGTGCTTTTCCAGA-TGGCTATCTAT---TT--TTATATAT-------TGCCT-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATatagacaatttcacaatcgcatatgttata
gi|8 : agatGTT-TGTCTTGAAGAAGGAACGCACCGTCCCTT---------------GGATT--TA-TCG--AATTGTTCGTGTC-GTTGGTCAaatc
gi|9 : ATTTT--------ATTCTATTTAC-CTAAATTTA--TCT-----CGTCAAACATTTTTATT-TATCATGTGTT--TCTTTTTGTTTTTTACTGTG----TCCA-AATG----TAGA-----TCATTATATACAGT--ATTGCCC-TGTGACcatcggtgtattatggtgtttttttattgattttgtatccactgcatgtgtggatccaacactcctagatatcgggtattgttga
blockSeqs : . . G . . . C . . . . A . . C T T . T G C A CA T A G T G . ACG C TA C C . TAC A T . . . . G NNNNNNNN . . G . . . . CG C TGCAT A A A G . T TG TG T C ACA CGT TTC TAACTC GTG AGTAACTGTTTTGTTT . G TG C A C CAT C C . T CGAAAAATTTAAC A G AA . T ATCTCAA A CA CAATAGAT . GC TGAGT T T A TCTTTTTG T GATGGCTA T CTA C AGTGT . C . C A T
blockSeqs : T . T A . A CA T T G T G . A . A . C . . . . . . G . . . . . . . . A CCA C AT TT GAT TATGC . A G . A . C C T . T AATGACTCTAG A . . . T CTTTTTG A CA CAATAGAT . . . T T . GTC C AGATG T . C AGTAA . . . . . .
blockSeqs : A . T C G . . . A . . . C . . A C T T . . . . T . . . . A . . T CGAAAAAAA . . . . C A T T . . . . T T . TTT C TATA T . . AGTAT . . . . . .
blockSeqs : . . TTG . . . . C . A . . . . . T A . TTC . GATG G . . . . . . . . .
blockSeqs : . . . . . . . . . . . G . GT . AATG . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : CAAGACTCAG******** ** ** TTC******* NATG***** AGTAT**
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTTGGTATACACAGGATGAAGTCATTCAACNCTACAAATGTATCAACCCCAAACTTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAGAATTCTGAGCTTCATCTACTTGTTTGATCNTGTGTCTTAACACTTACAACCGTATTACCCATTTTATTTCT-GGGCTTAATCCTGTTTACTAA-GTTTCCACATGCTAATTTACTACATTATACATGTTACTGGTTTNCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTT-ACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGACGCGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCANTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-GAGACGTTAATTA-----GNTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTG-AAAACAATTGAATTAGCGAGCCAAACACAATAA--A--TG--C--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTNATG-----------CTAG-CGTTTTTG-TATA-ACTATTTGT-ATTTC--GTAAANCCTTTCGTT-TGTCCTGAGGAAGGGACGGGTCGTTCCCG-AAAA----A----AGAATTAATA-TTT--AATTGTTCGTGTC-GTTGGTCATTTTAAAACTAATGNTTTTTGTAAATCTCAATTTT--------ATTCTATTTAC-TTAAATTTA--TCT-----CTTCATACATTTTTATT-TATCATGTGTT-GTC------TTTTTTACTGTGCTTTTCCAGAATG----TCTAT---TTCATTATATACAGT--G-TGCCC-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATTTATC
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTTGGTATACACAGGATGAAGTCATTCAACNCTACAAATGTATCAACCCCAAACTTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAGAATTCTGAGCTTCATCTACTTGTTTGATCNTGTGTCTTAACACTTACAACCGTATTACCCATTTTATTTCT-GGGCTTAATCCTGTTTACTAA-GTTTCCACATGCTAATTTACTACATTATACATGTTACTGGTTTNCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTT-ACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGACGCGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCANTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-GAGACGTTAATTA-----GNTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTG-AAAACAATTGAATTAGCGAGCCAAACACAATAA--A--TG--C--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTNATG-----------CTAG-CGTTTTTG-TATA-ACTATTTGT-ATTTC--GTAAANCCTTTCGTT-TGTCCTGAGGAAGGGACGGGTCGTTCCCAAGACTCAG--------AATTAATA-TTT--AATTGTTCGTGTC-GTTGGTCATTTTAAAACTAATGNTTTTTGTAAATCTCAATTTT--------ATTCTATTTAC-TTAAATTTA--TCT-----CTTCATACATTTTTATT-TATCATGTGTTTTC-------TTTTTTACTGTGCTTTTCCANATG-----TCTAT---TTCATTATATACAGTAT--TGCCC-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATTTATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCCTGGGATTTATCTAAATTTTATTTGTGCCATTGGTCACTTTAGTGCTTGTATCTACATGTAGATCCAACACTACTAGGTACCAGGTGTTGTTGGAATT
Unaligned ( gi|14 ): GTTATCCTTAGGTATTGATCAATGTAATTAAGGTGCAAAATCTCAAAATTAATGAAGATTTCAATTTTCAATAGATATTTATTTTATTTACTTAAATTT
Alignments
lowQualScore : 1 1 1 1 222 1 1 1 1 1 1 1 1 1 1 222 11 1 1 1111 1 11 1 1 222 1 1 11 1 1 1 1 77777777 1 1 11 1 1 1 22 33333 11 1 111 11 11111 22222 111 2222222 5555555555555555 1 111 1 1 222 77777777777777 1 1 11 2222222 44444444 11 11111 11111 1 111111 1111
lowQualScore : 5 5 1 5 5 000 5 5 5 5 5 1 5 5 5 5 7 3 7 777 6 3 55 22 0 2 3 2 0 4444 0 33 0 2 0 333 3 5 88 5 5 5 5 22222222 5 5 1 88 5 5 5 55 6 33333 1 7 7 6 88 3 999 11 7 8 88888 11111 00 000 6666666 888 0000000000000000 0 6 555 0 3 0 888 1 6 8 0 6 66666666666666 1 3 88 6 7 3333333 1 77 11111111 5 55 44444 1 6 66666 99 5 3 2 77 3 333333 0000 5 6 6 6 6 6 0
lowQualScore : . . . . . ... . . . . . . . . . . . . . ... . . .. .. . . . . . .... . .. . . . ... . . .. . . . . ........ . . . .. . . . .. . ..... . . . . .. . ... .. . . ..... ..... .. ... ....... ... ................ . . ... . . . ... . . . . . .............. . . .. . . ....... . .. ........ . .. ..... . . ..... .. . . . .. . ...... .... . . . . . . .
lowQualScore : 5 5 0 5 5 000 0 5 5 5 5 0 5 5 0 5 3 3 3 333 7 2 55 55 8 5 2 5 0 8888 0 22 0 5 0 333 3 5 55 5 0 5 0 55555555 0 5 0 00 5 5 5 33 7 33333 0 3 3 7 33 3 000 00 3 8 55555 55555 55 888 0000000 555 2222222222222222 0 5 888 0 2 0 888 0 5 0 7 7 33333333333333 3 3 33 7 8 3333333 4 00 44444444 7 77 33333 4 7 77777 77 2 5 0 77 2 777777 7777 7 7 7 7 7 7 8
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTTGGTATACACAGGATGAAGTCATTCAACNCTACAAATGTATCAACCCCAAACTTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAGAATTCTGAGCTTCATCTACTTGTTTGATCNTGTGTCTTAACACTTACAACCGTATTACCCATTTTATTTCT-GGGCTTAATCCTGTTTACTAA-GTTTCCACATGCTAATTTACTACATTATACATGTTACTGGTTTNCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTT-ACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGACGCGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCANTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-GAGACGTTAATTA-----GNTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTG-AAAACAATTGAATTAGCGAGCCAAACACAATAA--A--TG--C--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTNATG-----------CTAG-CGTTTTTG-TATA-ACTATTTGT-ATTTC--GTAAANCCTTTCGTT-TGTCCTGAGGAAGGGACGGGTCGTCCCNAA-AA---TA-AGAATTAATA-TTT--AATTGTTCGTGTC-GTTGGTCATTTTAAAACTAATGNTTTTTGTAAATCTCAATTTT--------ATTCTATTTAC-TTAAATTTA--TCT-----CTTCATACATTTTTATT-TATCATGTG-----TT-NTCTTTTTTACTGTGCTTTTCCAA-ATGTCTAT---TTCATTATATACAG-TATTGCCC-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATTTATC
Reference ( family-2185 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTTGGTATACACAGGATGAAGTCATTCAACNCTACAAATGTATCAACCCCAAACTTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAGAATTCTGAGCTTCATCTACTTGTTTGATCNTGTGTCTTAACACTTACAACCGTATTACCCATTTTATTTCT-GGGCTTAATCCTGTTTACTAA-GTTTCCACATGCTAATTTACTACATTATACATGTTACTGGTTTNCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTT-ACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGACGCGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCANTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-GAGACGTTAATTA-----GNTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTG-AAAACAATTGAATTAGCGAGCCAAACACAATAA--A--TG--C--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTNATG-----------CTAG-CGTTTTTG-TATA-ACTATTTGT-ATTTC--GTAAANCCTTTCGTT-TGTCCTGAGGAAGGGACGGGTCGTTCCCAA-GA--CTC-AGAATTAATA-TTT--AATTGTTCGTGTC-GTTGGTCATTTTAAAACTAATGNTTTTTGTAAATCTCAATTTT--------ATTCTATTTAC-TTAAATTTA--TCT-----CTTCATACATTTTTATT-TATCATGTG-----TT-TTCTTTTTTACTGTGCTTTTCCAN-ATGTCTAT---TTCATTATATACAG-TATTGCCC-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATTTATC
gi|1 : AATTCTTGGTATACACAGGATGAAGTCATTCAACCCTACAAATGTATCAACCCCAAA-TTACTGACCTCAACCGGTGATACCGGCTAAACCATTAAACAAAATTCTGAGCTTCATCTACTTGTTTGATTCTGTGTCTTAACACTTACAAC-GTAT-ACCCATTT-ATTTCTTGGGCT-AATCCTGTTTACTTATGTTTCCACATGCTAATTTACTACATT-TACCTGTTACTGGTTT-CAAGACT-TGTACTTAGTTCCAGTTTTCCTTA--CA-TTT-ACATCTA-C-TTCGCTGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCT-ATATCTGTTATTCTTTATAAATACCATGTATTTTATTTCCCCCCTTCTACCCTAGATCTTGATCTGGAC-CGAGGGATACGCTTGACGTTTTATTTGGCTGCTTAATCCACTGTCTTCATTATGGGTTGTTTATTTGGTTCTTTTTATCA--------ATTATTCATGAAATAGTTTCTATATATACTTTCTAGTGCATTTAGGAGAGATTGGAGAGAGAAATTACGAAGTTGATTTTTTGCACTGATTACTCGTCCTACC-AGGACGTTAATTA-----ATTAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCTTAAAT-CGCTCCTTTGAAAAACAAATAAATTAGTGAGCCAAACACAAGAA--A--TGGTT--AACTTGCAGTGCGCATT-ACG-T-----TGTAGATTTAGTGTAGTTTTCATG-----------CTAGTCGTTTTTGATATA-ATTATTTGT-ATTT---GTAAAACCCTTCGTTCTGTCCTGAGAAAGGGACAGGTCGTTCCCGA-AA--AAA-AAAATTAATAGTTTAAAATTGTTCAT-TCAGTTGGTCATTTTAAAA-TAGTGCTTTTTGTAATTCTTAATTTT--------ATTCTATTTACTTTAAATTTATTTCT-----TTTCAAAATTTTTTGTT-TATAATGTG-----TTAGTCTTTTTTACTGTGTTTTACAGA-ATATCTAT---TTTATTATATACAGTTAGTGCCCTTGTGACT-TGAGTTTTTA-C-CTGAATAAA-TCATTTATC
gi|10 : ctaatgttggtcagatacaatagaacgcaaaggaaATTTCAAAATTAAT--------CAAATCTCAATTTTCAATAGATATTTTATTTAC-TTAAATTTA--CCT-----CTTCATACATTTTTATT-TATCATG
gi|11 : tggttatccttaggtattgatcaatgttattaaggtgcaatTAATTTACGAAACCACA-----TACTGGTTTACAGGACTGTGTAC-TGGT-CCAGTTTTCAA-ACGCA-TTT--CATGCACCCTTCA-TGCCAGCATGATTCATTTACATTTGAATCTGA
gi|12 : -TATAATGTG-----TT-GTCTCTTTTACTGAGTTTTTACAT-ATATCTAT---TT-ATTATATACAG-TGTTGCCC-AGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATtaac
gi|15 : ttatgtgATTTTAAAATTAA-GATCTCAATAGAT----ATTTC--------ATTTTATTTAC-TTAAATTTA--TCT-----CTTCatcatatcat
gi|16 : tatccttaggtattgatcaatgttattaatgtgcaat-----TT-TTTTTTTTAACTGTACTTTTCCAG-ATGTCTATCTATTCATTATACA------TTGCCC-TGTGACT-AG-GTTTTTA-C-CCGAATAAA-TCAT
gi|17 : CCTGAGAAAGGGATGGATCGT-CCCAATGA--CTCTAGAATT--TA-TCT--AATTGTTCGTGTC-GTTGATCAT------ACTAATGTTatcacatcat
gi|18 : TTGCCC-CGTGACT-TG-GTTTTTACC-CTGAATAAATTCA-TTATC
gi|2 : TTTTATTTCT-GGGCTTAATCCTGTTTACTA--GTTTC-ACATGCTAATTTACTACATTATACATGT-ACTGGTTTTCAAGACTGTGTACTTAGT-CCAGTTTTCCT-A--CA-TTTTACATCTA-CCTTCG-TGCCAAAATAATCCATT---ATTTG-ATTTGACCGTTATCTTACATCTTATATCTGTTATTCT--ATAA-TAC-ATGTATTTTATTTCCCCCCTTCTACCCTAGA-CTTGATCTGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATTCATGAAATAGTTT-TATATATACTT-CTAGTGCAGTTAGGAGAGAT--GAGAGAGAAAT-ACGA-GTTGATTTTT-GCACTGATTACTCGTCCTACC--AGACGTTAATTA-----GATAGAATCAGCCACTTAGACAGAGATAAGACGTGTCCT--AAT-CGCTCCTTTG-AAAACAAT--AATTAGTGAGCCAAACACAATAA--A--TG--CGTAACTTGCAGTGCGCA-T-ACGTT-----TGTAGATTTAGTGTAGTTTTTATG-----------CTAG-CGTTTTTG-TATACATTATTTGT-ATTT---GTAAACCCTTTCGTT-TGTCCTGAGAAAGGGACAGGTCGTCCCGAA-AA----A-AAAATTAATAGTTTAAAATTGTTCGTGTC-GTTGGTCATTTTAAA--TAGTGCTTTTTGTAATTCTT-ATTTT--------ATTCTATTTAC-TTAAATTTA--TTT-----CTattcatatcata
gi|3 : ACTCATCCTACCCGAGA--TCAATTATGCATGGTAGA-TCAGCCCTTTGGAC-GA-ATAGATCATCTCCT--AATTCGCTACGT---AAAACCATTGAAT-AGCAAGCCAAA-ACACTAA--ACATG--C--AATTTGCAACGTTAATTCATG-TAACTCTGTAGATTTAGATTAGTTTTAGTAACTGTTTTGTTTTAA-CATTTC-G-TATA-CCT-TTGGTCATCTCATGTAAACCTTTTTGTT-TGTCCTGAAGAAAGGAAAGGGCGTTCC-----------------TAATA-TTT--AATTGTTCGTGTT-GTTGGTCA
gi|4 : aatataattagttaAATTCT-GG-ATACACAGGATGAAGTCATTCAACGCT-CAA-TGTATCAAC---AAACTTACTGACCTCA-CCGG-GATACCGGCTAAACCATTAA-CAGA-TTCTGAGCTTCATCTACTTGTTTGATCATGTGTCT-AACACT-ACAACCGTATTATCCATTTTATTTCT-GGGCTTAATCCTGTTTACTAA---TTTCACATGCAAATTTAGTACATTATACATG-TACTGGTTTCCAAGACTGTGTACTTA-T-CTAGTTTTCCT-A--CACTTT-ACATCTA-CCTTCG-TGCCAAAATAATC
gi|5 : ATTTTAAAACTAATGA-------AAATCTCAATTTTCAATAGATATTTTATTTAC-TTAGATTAA--TCT-----CT-AATACATTTTTATTATATC-TTTG-----TT-TTCTTTTT-ACTGTG--TTTCCAAGATGTC-AT---TT-ATTATATACAG-TAATACCC-TGTGACTCTG-GTTTTTA-CACTGAATAAA-TCA
gi|6 : ataggtattgaatcatgttattaagtgcgatAGCAAACCAAAAAGAATAACCA--TG--C--AATTTGCAATGTATAAT-ACT-T-----TGTAGATTAA---------------------------AG-C--TTTT--TATA-ACTACTTTC-CTTTC--GTAAAAC-TTTCTTT-TGTCCTGAGGAAGGGACAAATCGTCCCGAA-AAATTTA-ACAAT--ACA-TTT--A----TTCGTGTC-GTcatcatatcatca
gi|7 : ATTTC--------ATTTTATTTAC-TTAAAGTTAGCTCTTGAGTCTTCATGCATTTTTATT-TATCATGCG-----GA-GT-TTTTTTAACGTGCTTTTCCAG-ATGGCTAT---CTATTTTTATA----TATTGCCT-TGTGACT-TG-GTTTTTA-C-CTGAATAAA-TCATatagacaatttcacaatcgcatatgttata
gi|8 : agatGTT-TGTCTTGAAGAAGGAACGCACCGTCCCT--------T---GGATT--TA-TCG--AATTGTTCGTGTC-GTTGGTCAaatc
gi|9 : ATTTT--------ATTCTATTTAC-CTAAATTTA--TCT-----CGTCAAACATTTTTATT-TATCATGTGTTTCTTT-TTGTTTTTTACTGTG----TCCAA-ATGTAGA-----TCATTATATACAG-TATTGCCC-TGTGACcatcggtgtattatggtgtttttttattgattttgtatccactgcatgtgtggatccaacactcctagatatcgggtattgttga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCCTGGGATTTATCTAAATTTTATTTGTGCCATTGGTCACTTTAGTGCTTGTATCTACATGTAGATCCAACACTACTAGGTACCAGGTGTTGTTGGAATT
Unaligned ( gi|14 ): GTTATCCTTAGGTATTGATCAATGTAATTAAGGTGCAAAATCTCAAAATTAATGAAGATTTCAATTTTCAATAGATATTTATTTTATTTACTTAAATTT