lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 22 4444444444444444444444444444444444444444444444444444444444444444 2 1 3333333 1 2222 11 1 1111111111 111 444444444444444444444444444444444444444444444444 333333 1 333 11 1 1 1 11 11 4444444 33333 1
lowQualScore : 11 9999999999999999999999999999999999999999999999999999999999999999 0 5 2222222 8 0 3 6 99 7777 6 6 88 9 6 6 6 99 0 9999999999 444 5 666666666666666666666666666666666666666666666666 5 1 1 0 3 8 5 5 5 77 5 2 0 1 4 666666 1 5 0 222 66 66 5 4 4 55 3 55 1 1 4 4 0 1 4 4 4 5 44 5 5 77 22 4 4 4 66 1 4 3 2 7 9999999 0 5 55555 0 888 2 6 1
lowQualScore : .. ................................................................ . . ....... . . . . .. .... . . .. . . . . .. . .......... ... . ................................................ . . . . . . . . . .. . . . . . ...... . . . ... .. .. . . . .. . .. . . . . . . . . . . .. . . .. .. . . . .. . . . . . ....... . . ..... . ... . . .
lowQualScore : 00 5555555555555555555555555555555555555555555555555555555555555555 0 0 5555555 8 0 2 7 22 0000 7 7 88 8 7 3 7 22 3 6666666666 666 7 333333333333333333333333333333333333333333333333 7 3 7 7 0 4 1 7 7 99 7 5 2 9 4 222222 1 0 0 000 99 99 0 4 4 00 6 55 8 9 4 4 2 3 4 0 4 0 66 0 0 22 22 4 4 4 22 1 4 4 2 1 1111111 7 0 66666 1 333 5 7 8
consensus : NNNNNNNNNNNNNNNNGATCTCAGGATGGT--GT----ATACAGAAAACA--ATGATTTGATTATAGGCATGAAT-TANAANGAAAATCCCTGTTCAGAAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTTT-A-ATAAACA-TG-AAGATTAGTA-TGAATGG-AAGTTAAA--TTGCGTAAAATA------A---AAAA-ATATTGTCTTTG-TA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACC-CG--CTTAT-CGTTCTTGATTGTGGGTGC-TT-----GTGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAA--ATA--GT-GTA-A-TT--TACA-CCGTTT--TGTTTAAAGAAATTTCT-C-ATTAATTCAAT-GGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTCG-TAGT--ACAGC-CAT-ATC-AGTTTGAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGATTT---AA--AAGAGGATGATCTTCTAGC---TTCTTGAAGAGGAGCTAA-CGAATCATGACNCCTAG-CTACCAAATACTAACGATTATT
Reference ( gi|1 ) : TTGTAATTATGAGCCCGATCTCAATATGGCAAGTCCAAATACAGTTAACATTATAAGTT--TTACA--TTTGAATATATAACGAAAATC----TTTA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTT--A-ATAAACA-TG-ATGATTAGTA-TGATTGG-AAGTTAAA--TTGCATAAAATA------A---AAAA-ATATTGTCTTTG-TA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACC-CG--CTTAT-CGTTCTTGATTGTGGGTGC-TG-----GTGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-T-TAGAAA--ATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTACTTTAAT-GGTTCTATATGAA-TTTTTGTTTTCTCAC-CAATTGCC-TG-ATTTCA-TAGT--ACAGC-CAT-ATC-AGTTTGAAT-CAGCCA-GAAATAATGACAGCAAGCAAATGACGATTTATTAA--AAGAGGATGATCTTCTATA---TTCTTGAAGAGGAGCTAA-CAAATCATGACCCCTAG-CTACCAAATACTTACGATTATT
gi|2 : GATCTCAGGATGGT--GT----ATACAGAAAACA--ATGATTTGATTATAGGCATGAAT-TAAAAGGA----T----TTTA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTT--G-ATTAACA-TG-AAGATTAGTA-TGAATGG-AAGTTAAA--TTGCATAAAATA------AAATAAAA-ATATTGCCTTTG-CA------------TT---------------------------------GCTG-TAAACTTGTGCATGGAACGAATTT-ATTACC-CG--CTTAT-CGTTCTTGATTGTGGGTGC-TG-----GTGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAA--ATA--GT-GTA-A-TT--TGTA-CTGTTT--TGTTTAAAGAAATTTAT-C-ATCACTTTAAT-GGTTTTATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-CG-GTTTCG-TAGT--ACAGC-CAT-ATC-AGTT---------------AATAATAACGGCACGCGAAT
gi|3 : tgtgttttatatgttcgcgactaacatgtaacagtgactgtgtgagaaaatagctcagtgatagaagtagtatgtacagaaaaacaatgatatgatcacagacatggataaaaaATAAC--AAATCCCTGTTCAGAAGGT-AATGTATATATGAAA-AATTT-CTAAAATTGG-T---TTTAACTTT-A-ATAAACA-TG-AT---T-GTA-TGAGATG-AAGTTAAAGTTTGCATACAATA------A---AAAAGAAATTGTCTTTGATA------------TTTTTTTTTTCTTTGT-TAAGAAAT----------------------GTGCATGGA-CG--TTT-TTTACC-CAGACTTATTCGTC--TGATTGTGGGTGC-TT-----GTGACGTCACAAAGACCCATCGATGAACACACAACGCAA-TAGAAAATATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTA---GAATTTTT-C-ATTAAGTTCATGGGTTATATATGAA-TTTTTGTTTTCTGACGCAATTGCC-TG-ATTTCG-TAGTAAACAAC-CATAATC-AATTTA----C-GC------GTAA-GACGGCAAGCGAATGACGATTT----A--AAGAGTATGATCTTCTAGC---TTTTTGAAGAGGAGCTAA-CGAATCATGACACCTAG-CTACCAAATACTAACGAT
gi|5 : atcAT-------TGAAACAATTT-T--ACATTGG-TA--TTTAACTTTTA-ATAAACA-TGGAAGATTAGTAATGAATGGTAAGTAAAA--TTGCATAAAATA------A---AAAA--TATTGTCTT-G-TA------------TT------------GT-TAAGAAATA-------AA-CTGTTCAACTTGTGCATGGAACGAATTT-ATTACCGCG---TTAT-CGTTCTTGATTGTGGGTGCTTA-----TTGAC-TCACAAAGACGCATCCTTGAA-A-ACAACGC-A-TAGAAT--AAA--GTGGTA-AGTT--TACATCTGTTT--CGTTTAAAGAAATTCCTGCAATTAATTTAAT-GGTTATAT-TGAACTTTTTCGTTTCTGAC-TAATTGCCATGAATTTCAGTAGT--ACAGCGCAT-ATCAAGTTTGAACGCAGCCAGGAAATAATAACGACAAGCGAATG-----------A--AAGAGGATGATCTAGCGGC---TTCTTGAAGAGG------------CATGACCCCT---CTACCAAATACTTACGATTAaa
gi|4 : -------TGAAAAGATTTTCTAACATTGGCTAGTCTTTACTT--A-ATAAACA-TG-AT---T-GTA-TGAGTGA-AAGTTAAT--TTGCATAAAATA------A---AAAA-A-ATTGTCTTTG-TAATTTTTTTTTCTTT------------GT-TAAGAAAT----------------------GTGCATGGA-CGTGTTTTATTACC-CG--CTTAT-CGT-CTT---TGTGGGTGC-TTT----GTGACGTCACAAAGACCCATCGATGAA-ACACAACGC-AATAGAAA--ATATAGT-GTA-A-TT--TACA-CTGTTTGTTGTTTAG-----TTTTT-C-ATAAATTCAAT-GGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTCG-TAGTAAACAAC-CAT-ATC-AATTTAAA--CA-CCA-GAAATAATGACGGCAAGCGAATGACGATTT----A--AAGAGTATGG-CTTCTCTGTGCTTTTTGAAGAGGAGCTAACCGAATCATGACACCTAGCCTACCAAAAGCTAACGATAATT
gi|6 : TTGG-TA--TTTTACTTT-ATATAAACA-TA-AAGATTAGTA-TTAATGA-AAGTTAAA--AAGCATAAAATA------A---AAAA--TGCTGTCTTTG-CA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAATTTGTGCATGAAACGAATTT-ATTACT-CG--CTTAT-CGTTCTTGATTATGGGTAC-TT-----GTGACGTCAAAAAGACCCATCGATGAA-A-ACAACGT-A-CAGAAA--ATA--GT-GTA-A-TT--TATA-CTGTTT--TGTTTAAAGAAATGTCT-C-ATTATT---AT-GGATATACATGAA-TCTTTGTTTTCTGAC-AAATTGCC-TG-ATTTCG-TAGT--ACAGC-CAT-ATC-AGTTTGAAC-CATCCA-GGAt
gi|7 : TGA-TA--TTTTACTT--T-ATAGACAATA-A-GATTGCTG-TGAATGA-AAGTTAAA--TTGCGTATAATGTAAAACA---AAAA-ATATA-----TG-TA------------TT------------GTCTATGCAATACAAACTGAAGCTG-TAAACTTGTAAATG---------T-ATTACC-CG--CTTAT-CGTTCTTGATT---GAT----------------TCACAAAGACCCATCGATGTA-A-ACAACGC-A-ATGAAA--ATA--GA-GCA-A-CTA-CACA-CCGTAT--TGTg
gi|9 : taaggcattatgaaattatatcagtctaTGCGTAGAA--------G---AAAA-ACATCGCCATTG-TA------------TT------------GG-TATGAAATG-------AATCTG-TAAATTTATA-----AATGAACAT-GTTCCC-AG--CTTAT-CATTCTTTATTATGTGTGT-TTACTTTGTGACGTCATAAAAACCCTTCGATGAT-A-ACAAAACAA-TA-AAA--ATA--AT-GTA-A-TTG-TACG-CCGTTT--TGGTGAACGAAA--TCT-C-ATTCATTGTAT-GGATATCGATGAA-TTTCTGTTTTCTGA--CAAT
gi|15 : TTCT--ATTGGTGGTAC-TCCTTT-GTGACTTCACAAAAGACCATCTATGAA-A-ACAAAAC-A-ATGAAA--ATA--TT-TTATA-TCTGTACA-CCATTcatg
gi|3 : atgacctataatatattgtaggaaatgttcgcccaaTGGGTCT-TT-----GTGACGTCACAAGCACCCA
gi|10 : atcataacaaatccctgttcagaaggtaatgtatatatgaaaaatttctaaaattggttttaactttaataaacatgattgtatgagatgaagttaaagtttgcatacaataaaaaagaaattgtctttgatattttttttttctttgttaagaaatgtgcatggacgttttttacccagacttattcgtctgattg-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTT-T-C-ATTAATTCAAT-GGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-AATTCG-TAGT--ACAGC-CAT-ATC-AATTTAAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGATTT----A--AAGAGTATGATCTTCTAGC---TTTTTGAAGAGGGGCTAA-CGAATCATGACACCTAG-CTACCAAATACTAACGATtcgatgaacacacaacgcaatagaaaatatagtgtaatttacactgttttgtttagaatttttcattaagttcatgggttatatatgaatttttgttttctgacgcaattgcctgatttcgtagtaaacaaccataatcaatttacgcgtaagacggcaagcgaatgacgatttaaagagtatgatcttctagctttttgaagaggagctaacgaatcatgacacctagctaccaaatactaacgataa
gi|14 : CA-CTGTTT--TGTTTAAAGAATTCCCT-C-ATTGTTTTAAT-AGATATACATGAA-TCTTTGTTTTCTGAC-GAGTTGAC-TG-ATTTCG-TAGT--TCAGC-CAT-ATA-AGTTTGAAC-CAGCCA-GAAATAATGACAGTCAGCCAATGaa
gi|19 : -CTGTTT--TGGTTAAAGAAATTTCT-C-ATTAATTCAAT-GGTTATATATGAA-TTTTCGTTTTCT
gi|12 : TTTCTGAC-AAACTACT-TG-ATTTCA-TGGT--ACA-C-CAT-ATC-AGTTTGAAC-CAGTCA-GAAATAAAGACAGCAAGCGAATAACAGTTCTTGAA--CAGAAGATGA-------------TCTTGAAGAGGAAC
gi|16 : --ACAGC-CAT-ATC-AGTTTGAAC-CAGCCA-GAAA------CGACAAGCGAATGATGATTTATTATTTAAGAGGATGATCTTCTAGC---TTCTGGAGGAGGAGCTAA-CGAATCATGACCCCTAG-CTACcctagccatcaggtacagtcgtttaacg
gi|18 : AA--AAGAGGATGATCTTCTAAC---TTCTTGAAGAGGAGCTAA-CGAATGATGGCCCCTAG-CTACCAAATACTAACGATTAT
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): CAGCTGATTTTTTCCTCTGTTGCTGATTTACACGTAAAAGTGATTGTCTGAGAAAAGATCTCGGTCAAAAATTAATATATACAGAAAAAACAATAGTCTATAAAGAAAGCGCTATATGAGTATGGGCATTAATAAAAAGACCTCAGTCAAAGAAATAGTATATACAGAAAAAAACCAATATACAGAAAAAACAATATGAGTATAGGCATTAATAAAAATATCTCAGTCAAAGAAATAG
Unaligned ( gi|11 ): AAAATACCTCAGTCAAAGAATTAGTATATAAAAAAAACCAAAATGGATTATAGGTATAAAGAACTGTCGAAGAAATAAAGTATATACAGAAGACAATGATATGATTATAGGCATGAAAAAGTTTCAGTCAATGAAATAGTGTATATTAATA
Unaligned ( gi|13 ): CAGCTGTGTTTCCTCTATTACGATTTAACCGTAAAAAGTGATTTGTCTGAGAAAAGATCTCGGTCAAAGAAATAATACATACAGAAAAAACAATAGTCTATAAAGAAAACGCCCTATGAGTATGGGCATTAATAA
Unaligned ( gi|17 ): AGCTGTGTTTCCTCTATTCACGATTTACACGTAAAAGTGATTGTCTGAGAAAAGATCTCGGTCAAAGAAATAATACATACAGAAAAAACAATAGTCTATAAAGAAAACGC
Alignments
lowQualScore : 22222222 1 11 11 111 44444 2 2222222 11 11111111 11111 44444444444444444444444444 1111 2222222222 11 11 22222222
lowQualScore : 2 44444444 0 33 4 2 22 33 1 222 22222 0 3 6 6666666 5 8 0 5 77 00 5 5 8 7 5 5 99 77 88888888 6 888 77777 2 0 5 22222222222222222222222222 0 0 5555 5 0 1 6 3 5 66 5 5 1 4444444444 4 1 4 8 4 8 22 4 4 4 33 3 2 55 0 4 4 4 3 4 4 4 4 4 55 55 4 4 4 55 3 0 3 0 44444444 888 5 3 888 5 1 5
lowQualScore : . ........ . .. . . .. .. . ... ..... . . . ....... . . . . .. .. . . . . . . .. .. ........ . ... ..... . . . .......................... . . .... . . . . . . .. . . . .......... . . . . . . .. . . . .. . . .. . . . . . . . . . . .. .. . . . .. . . . . ........ ... . . ... . . .
lowQualScore : 5 00000000 0 88 0 5 88 22 0 888 00000 7 3 7 0000000 0 0 8 7 99 77 7 7 7 1 7 7 77 99 22222222 2 888 55555 2 4 0 44444444444444444444444444 2 2 6666 0 2 4 2 4 0 99 0 0 1 0000000000 4 1 4 9 4 9 22 4 0 0 55 3 0 00 7 0 0 0 9 0 0 4 4 4 55 55 0 0 0 00 6 8 3 1 66666666 888 0 2 888 7 0 7
consensus : NNNNNNNNNNNNNNNNGATCTCAGNATGGT--GT----ATACAGAAAA-CA--ATGATNTGATTACAGGCATGAAT-TANAANGAAAATC----TTTA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTTT-A-ATAAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGC-------ATAAAATAA---AAAA-----ATATTGTCTTTG-TA------------TT------------GTTAAGAAATAAAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGAT---TTA--A---A-AGAGGATGATCTTCTA---GCTTCTTGAAGAGGAGCTAA-CGAATCATGACCCCTAG-CTACCAAATACTAACGATTATT
Reference ( family-2168 ) : NNNNNNNNNNNNNNNNGATCTCAGGATGGT--GT----ATACAGAAAA-CA--ATGATTTGATTATAGGCATGAAT-TANAANGAAAATCCCTGTTCAGAAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTTT-A-ATAAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGC-------GTAAAATAA---AAAA-----ATATTGTCTTTG-TA------------TT------------GTTAAGAAATAAAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TACA-CCGTTT--TGTTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGAT---TTA--A---A-AGAGGATGATCTTCTA---GCTTCTTGAAGAGGAGCTAA-CGAATCATGACNCCTAG-CTACCAAATACTAACGATTATT
gi|1 : GATCTCAATATGGCAAGTCCAAATACAGTTAA-CATTATAAGTT--TTACA--TTTGAATATATAACGAAAATC----TTTA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTT--A-ATAAACATG-ATGATTAGT-ATGA-TTGG-AAGTTAAA--TTGC-------ATAAAATAA---AAAA-----ATATTGTCTTTG-TA------------TT------------GTTAAGAAATAAAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----G-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-T-TAGAAAATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTAC-TTTAATGGTTCTATATGAA-TTTTTGTTTTCTCAC-CAATTGCC-TG-ATTTC-ATAGT--A--CAGC-CATA-TC-AGTTTGAAT-CAGCCA-GAAATAATGACAGCAAGCAAATGACGATTTATTA--A---A-AGAGGATGATCTTCTA---TATTCTTGAAGAGGAGCTAA-CAAATCATGACCCCTAG-CTACCAAATACTTACGATTATT
gi|10 : ttgtaattatgagccc-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTT-T-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-AATTC-GTAGT--A--CAGC-CATA-TC-AATTTAAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGAT---TT---A---A-AGAGTATGATCTTCTA---GCTTTTTGAAGAGGGGCTAA-CGAATCATGACACCTAG-CTACCAAATACTAACGAT
gi|11 : GT--AT----ATACAGAAGA-CA--ATGATATGATTATAGGCATGAAaa
gi|12 : aaaatacctcagtcaaagaattagtatataaaaaaaaccaaaatggattataggtataaagaactgtcgaagaaataaaTTTCTGAC-AAACTACT-TG-ATTTC-ATGGT--A--CA-C-CATA-TC-AGTTTGAAC-CAGTCA-GAAATAAAGACAGCAAGCGAATAACAGTTC-TTG--A---ACAGAAGATGA-------------TCTTGAAGAGGAACaaagtttcagtcaatgaaatagtgtatattaata
gi|14 : CA-CTGTTT--TGTTTAAAGAATTCCCT-C-ATTGT-TTTAATAGATATACATGAA-TCTTTGTTTTCTGAC-GAGTTGAC-TG-ATTTC-GTAGT--T--CAGC-CATA-TA-AGTTTGAAC-CAGCCA-GAAATAATGACAGTCAGCCAATGcctagccatcaggtacagtcgtttaacg
gi|15 : TTCT--ATTGGTGGTACTCCTTT-----G-TGACTTCACAAAAGACCATCTATGAA-A-ACAAAAC-A-ATGAAAATA--TT-TTATA-TCTGTACA-CCATT
gi|16 : atgacctataatatattgtaggaaatgttcgcccaa--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAA------CGACAAGCGAATGATGAT---TTATTATTTA-AGAGGATGATCTTCTA---GCTTCTGGAGGAGGAGCTAA-CGAATCATGACCCCTAG-CTAC
gi|18 : TTGAAC-CAGCCA-GAAA-----------------------------A--A---A-AGAGGATGATCTTCTA---ACTTCTTGAAGAGGAGCTAA-CGAATGATGGCCCCTAG-CTACCAAATACTAACGATTAT
gi|19 : -CTGTTT--TGGTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTCGTTTTCT
gi|2 : TAGT--AT----GTACAGAAAAACA--ATGATATGATCACAGACATGGA--TAAAAAGA
gi|2 : tgtgttttatatgttcgcgactaacatgtaacagtgactgtgtgagaaaatagctcagtgatagaagGATCTCAGGATGGT--GT----ATACAGAAAA-CA--ATGATTTGATTATAGGCATGAAT-TAAAAGG---AT-----TTTA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTAC-TT-G-ATTAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGC-------ATAAAATAAAATAAAA-----ATATTGCCTTTG-CA------------TT-------------------------GCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----G-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TGTA-CTGTTT--TGTTTAAAGAAATTTAT-C-ATCAC-TTTAATGGTTTTATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-CG-GTTTC-GTAGT--A--CAGC-CATA-TC-AGTT---------------AATAATAACGGCACGCGAATtctcaggatggtgtatacagaaaacaatgatttgattataggcatgaattaaaaggattttaaaggtcaattgaaacaatttctaacattggtattttacttgattaacatgaagattagtatgaatggaagttaaattgcataaaataaaataaaaatattgcctttgcattgctgtaaacttgtgcatggaacgaatttattacccgcttatcgttcttgattgtgggtgctggtgacgtcacaaagacccatcgatgaaaacaacgcatagaaaatagtgtaatttgtactgttttgtttaaagaaatttatcatcactttaatggttttatatgaatttttgttttctgaccaattgcccggtttcgtagtacagccatatcagttaataataacggcacgcgaat
gi|3 : tgtgttttatatgttcgcgactaacatgtaacagtgactgtgtgagaaaatagctcagtgatagaagtagtatgtacagaaaaacaatgatatgatcacagacatggataaaaaAT-CATAAC--AAATCCCTGTTCAGAAGGT-AATGTATATATGAAA-AATTT-CTAAAATTGG-T---TTTAACTTT-A-ATAAACATG-A---TT-GT-ATGAGATG--AAGTTAAAGTTTGC-------ATACAATAA---AAAAG----AAATTGTCTTTGATA------------TTTTTTTTTTCTTTGTTAAGAAAT---------------GTGCATGGA-CG--TTT-TTTACCCAGAC-TTATTCGTC--TGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAACACACAACGC-AATAGAAAATATAGT-GTA-A-TT--TACA-CTGTTT--TGTTTAGA---ATTTTT-C-ATTAAGTTCATGGGTTATATATGAA-TTTTTGTTTTCTGACGCAATTGCC-TG-ATTTC-GTAGT--AAACAAC-CATAATC-AATTT--AC---GC------GTAA-GACGGCAAGCGAATGACGAT---TTA--A---A--GAGTATGATCTTCTA---GCTTTTTGAAGAGGAGCTAA-CGAATCATGACACCTAG-CTACCAAATACTAACGAT
gi|4 : -------TGAAAAGATTTTCTAACATTGGCTAGTCTTTACTT--A-ATAAACATG-A---TT-GT-ATGA-GTGA-AAGTTAAT--TTGC-------ATAAAATAA---AAAA-----A-ATTGTCTTTG-TAATTTTTTTTTCTTT------------GTTAAGAAAT---------------GTGCATGGA-CGTGTTTTATTACCCG--C-TTAT-CGT-CTT---TGTGGGTGCT----TT----G-TGACGTCACAAAGACCCATCGATGAA-ACACAACGC-AATAGAAAATATAGT-GTA-A-TT--TACA-CTGTTTGTTGTTTAG-----TTTTT-C-ATAAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGTAAA--CAAC-CATA-TC-AATTTAAAC---ACCA-GAAATAATGACGGCAAGCGAATGACGAT---TT---A---A-AGAGTATGG-CTTCTCTGTGCTTTTTGAAGAGGAGCTAACCGAATCATGACACCTAGCCTACCAAAAGCTAACGATAATTaa
gi|5 : AT-------TGAAACAATTT-T--ACATTGG-TA--TTTAACTTTTA-ATAAACATGGAAGATTAGTAATGA-ATGGTAAGTAAAA--TTGC-------ATAAAAT-A---AAAA-----ATATTGTC-TTG-TA------------TT------------GTTAAGAAATAAA-CTGTTCAACTTGTGCATGGAACGAATTT-ATTA-CCG--CGTTAT-CGTTCTTGATTGTGGGTGCT----T-----ATTGAC-TCACAAAGACGCATCCTTGAA-A-ACAACGC-A-TAGAATAAA--GTGGTA-AGTT--TACATCTGTTT--CGTTTAAAGAAATTCCTGCAATTAA-TTTAATGGTTATAT-TGAACTTTTTCGTTTCTGAC-TAATTGCCATGAATTTCAGTAGT--A--CAGCGCATA-TCAAGTTTGAACGCAGCCAGGAAATAATAACGACAAGCGAATG-------------A---A-AGAGGATGATCTAGCG---GCTTCTTGAAGAGG------------CATGACCCCT---CTACCAAATACTTACGATTAt
gi|6 : TTGG-TA--TTTTACTTT-ATATAAACATA-AAGATTAGT-ATTA-ATGA-AAGTTAAA--AAGC-------ATAAAAT-A---AAAA-----ATGCTGTCTTTG-CA------------TT------------GTTAAGAAATAAAGCTG-TAAATTTGTGCATGAAACGAATTT-ATTACTCG--C-TTAT-CGTTCTTGATTATGGGTACT----T-----G-TGACGTCAAAAAGACCCATCGATGAA-A-ACAACGT-A-CAGAAAATA--GT-GTA-A-TT--TATA-CTGTTT--TGTTTAAAGAAATGTCT-C-ATT-A-TT--ATGGATATACATGAA-TCTTTGTTTTCTGAC-AAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CATCCA-GGA
gi|7 : TGA-TA--TTTTACTTT-A--TAGACAAT-AAGATTGCT-GTGA-ATGA-AAGTTAAA--TTGCGTATAATGTAAAACAA---AAAATATATGTATTGTCTATG-CA---------------------------ATACAAACTGAAGCTG-TAAACTTGTAAATG---------T-ATTACCCG--C-TTAT-CGTTCTTGATT---GAT--------------------TCACAAAGACCCATCGATGTA-A-ACAACGC-A-ATGAAAATA--GA-GCA-A-CTA-CACA-CCGTAT--TGTg
gi|9 : taaggcattatgaaattatatcagtctaTGC-------GTAGAA--G---AAAA-----ACATCGCCATTG-TA------------TT------------GGTATGAAATGAATCTG-TAAATTTATA-----AATGAACAT-GTTCCCAG--C-TTAT-CATTCTTTATTATGTGTGTT----TACTTTG-TGACGTCATAAAAACCCTTCGATGAT-A-ACAAAACAA-TA-AAAATA--AT-GTA-A-TTG-TACG-CCGTTT--TGGTGAACGAAA--TCT-C-ATTCA-TTGTATGGATATCGATGAA-TTTCTGTTTTCTGA--CAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAGCTGATTTTTTCCTCTGTTGCTGATTTACACGTAAAAGTGATTGTCTGAGAAAAGATCTCGGTCAAAAATTAATATATACAGAAAAAACAATAGTCTATAAAGAAAGCGCTATATGAGTATGGGCATTAATAAAAAGACCTCAGTCAAAGAAATAGTATATACAGAAAAAAACCAATATACAGAAAAAACAATATGAGTATAGGCATTAATAAAAATATCTCAGTCAAAGAAATAG
Unaligned ( gi|13 ): CAGCTGTGTTTCCTCTATTACGATTTAACCGTAAAAAGTGATTTGTCTGAGAAAAGATCTCGGTCAAAGAAATAATACATACAGAAAAAACAATAGTCTATAAAGAAAACGCCCTATGAGTATGGGCATTAATAA
Unaligned ( gi|17 ): AGCTGTGTTTCCTCTATTCACGATTTACACGTAAAAGTGATTGTCTGAGAAAAGATCTCGGTCAAAGAAATAATACATACAGAAAAAACAATAGTCTATAAAGAAAACGC
Alignments
lowQualScore : 1 22222222 1 11 3333333333333333333 11 22222222 11 22222222222 33333333333333333333333333 33333333333 2222222222 11 11 22222222
lowQualScore : 1 3 44444444 0 33 1 2 22 9999999999999999999 33 2 22222222 5 8 0 5 77 00 5 5 8 7 5 5 99 77 44444444444 5 2 3 5 33333333333333333333333333 5 0 00000000000 5 0 1 6 3 5 66 5 5 1 4444444444 4 1 4 8 4 8 22 4 4 4 33 3 55 0 4 4 4 3 4 4 4 4 4 55 55 4 4 4 55 3 0 3 0 44444444 888 5 3 888 5 0 5
lowQualScore : . . ........ . .. . . .. ................... .. . ........ . . . . .. .. . . . . . . .. .. ........... . . . . .......................... . . ........... . . . . . . .. . . . .......... . . . . . . .. . . . .. . .. . . . . . . . . . . .. .. . . . .. . . . . ........ ... . . ... . . .
lowQualScore : 0 3 00000000 0 88 0 5 88 0000000000000000000 22 5 55555555 2 0 8 7 99 77 7 7 7 1 7 7 77 99 11111111111 0 2 4 0 22222222222222222222222222 0 5 00000000000 0 2 4 2 4 0 99 0 0 1 0000000000 4 1 4 9 4 9 22 4 0 0 55 3 00 7 0 0 0 9 0 0 4 4 4 55 55 0 0 0 00 6 8 3 1 66666666 888 0 2 888 7 7 7
consensus : NNNNNNNNNNNNNNNNGATCTCAGNA-TGGT--GT----ATACAGAAAA-CA--ATGATNTGATTACAGGCATGAAT-TANAANGAAAATC----TTCA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTTT-A-ATAAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGCATAAAATA------A---AAAA-ATATTGTCTTTG-TA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGAT---TTA--A---A-AGAGGATGATCTTCTA---GCTTCTTGAAGAGGAGCTAA-CGAATCATGACCCCTAG-CTACCAAATACTAACGATTATT
Reference ( family-2168 ) : NNNNNNNNNNNNNNNNGATCTCAGNA-TGGT--GT----ATACAGAAAA-CA--ATGATNTGATTACAGGCATGAAT-TANAANGAAAATC----TTTA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTTT-A-ATAAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGCATAAAATA------A---AAAA-ATATTGTCTTTG-TA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGAT---TTA--A---A-AGAGGATGATCTTCTA---GCTTCTTGAAGAGGAGCTAA-CGAATCATGACCCCTAG-CTACCAAATACTAACGATTATT
gi|1 : GATCTCAATA-TGGCAAGTCCAAATACAGTTAA-CATTATAAGTT--TTACA--TTTGAATATATAACGAAAATC----TTTA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTT--A-ATAAACATG-ATGATTAGT-ATGA-TTGG-AAGTTAAA--TTGCATAAAATA------A---AAAA-ATATTGTCTTTG-TA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----G-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-T-TAGAAAATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTAC-TTTAATGGTTCTATATGAA-TTTTTGTTTTCTCAC-CAATTGCC-TG-ATTTC-ATAGT--A--CAGC-CATA-TC-AGTTTGAAT-CAGCCA-GAAATAATGACAGCAAGCAAATGACGATTTATTA--A---A-AGAGGATGATCTTCTA---TATTCTTGAAGAGGAGCTAA-CAAATCATGACCCCTAG-CTACCAAATACTTACGATTATT
gi|10 : ttgtaattatgagccc-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTT-T-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-AATTC-GTAGT--A--CAGC-CATA-TC-AATTTAAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGAT---TT---A---A-AGAGTATGATCTTCTA---GCTTTTTGAAGAGGGGCTAA-CGAATCATGACACCTAG-CTACCAAATACTAACGAT
gi|11 : GT--AT----ATACAGAAGA-CA--ATGATATGATTATAGGCATGAA---------AAAGT-----TTCA----GTCAA--------TGAAATAGTaa
gi|12 : aaaatacctcagtcaaagaattagtatataaaaaaaaccaaaatggattataggtataaagaactgtcgaagaaataaaTTTCTGAC-AAACTACT-TG-ATTTC-ATGGT--A--CA-C-CATA-TC-AGTTTGAAC-CAGTCA-GAAATAAAGACAGCAAGCGAATAACAGTTC-TTG--A---ACAGAAGATGA-------------TCTTGAAGAGGAACgtatattaata
gi|14 : CA-CTGTTT--TGTTTAAAGAATTCCCT-C-ATTGT-TTTAATAGATATACATGAA-TCTTTGTTTTCTGAC-GAGTTGAC-TG-ATTTC-GTAGT--T--CAGC-CATA-TA-AGTTTGAAC-CAGCCA-GAAATAATGACAGTCAGCCAATGcctagccatcaggtacagtcgtttaacg
gi|15 : TTCT--ATTGGTGGTACTCCTTT-----G-TGACTTCACAAAAGACCATCTATGAA-A-ACAAAAC-A-ATGAAAATA--TT-TTATA-TCTGTACA-CCATT
gi|16 : atgacctataatatattgtaggaaatgttcgcccaa--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAA------CGACAAGCGAATGATGAT---TTATTATTTA-AGAGGATGATCTTCTA---GCTTCTGGAGGAGGAGCTAA-CGAATCATGACCCCTAG-CTAC
gi|18 : TTGAAC-CAGCCA-GAAA-----------------------------A--A---A-AGAGGATGATCTTCTA---ACTTCTTGAAGAGGAGCTAA-CGAATGATGGCCCCTAG-CTACCAAATACTAACGATTAT
gi|19 : -CTGTTT--TGGTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTCGTTTTCT
gi|2 : AGAAGTAGT--AT----GTACAGAAAAACA--ATGATATGATCACAGACATGGA--TAAAAAGA
gi|2 : tgtgttttatatgttcgcgactaacatgtaacagtgactgtgtgagaaaatagctcagtgatGATCTCAGGA-TGGT--GT----ATACAGAAAA-CA--ATGATTTGATTATAGGCATGAAT-TAAAAGGA----T----TTTA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTAC-TT-G-ATTAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGCATAAAATA------AAATAAAA-ATATTGCCTTTG-CA------------TT---------------------------------GCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----G-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TGTA-CTGTTT--TGTTTAAAGAAATTTAT-C-ATCAC-TTTAATGGTTTTATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-CG-GTTTC-GTAGT--A--CAGC-CATA-TC-AGTT---------------AATAATAACGGCACGCGAATtctcaggatggtgtatacagaaaacaatgatttgattataggcatgaattaaaaggattttaaaggtcaattgaaacaatttctaacattggtattttacttgattaacatgaagattagtatgaatggaagttaaattgcataaaataaaataaaaatattgcctttgcattgctgtaaacttgtgcatggaacgaatttattacccgcttatcgttcttgattgtgggtgctggtgacgtcacaaagacccatcgatgaaaacaacgcatagaaaatagtgtaatttgtactgttttgtttaaagaaatttatcatcactttaatggttttatatgaatttttgttttctgaccaattgcccggtttcgtagtacagccatatcagttaataataacggcacgcgaat
gi|3 : tgtgttttatatgttcgcgactaacatgtaacagtgactgtgtgagaaaatagctcagtgatagaagtagtatgtacagaaaaacaatgatatgatcacagacatggataaaaaAT-CATAAC--AAATCCCTGTTCAGAAGGT-AATGTATATATGAAA-AATTT-CTAAAATTGG-T---TTTAACTTT-A-ATAAACATG-A---TT-GT-ATGAGATG--AAGTTAAAGTTTGCATACAATA------A---AAAAGAAATTGTCTTTGATA------------TTTTTTTTTTCTTTGT-TAAGAAAT----------------------GTGCATGGA-CG--TTT-TTTACCCAGAC-TTATTCGTC--TGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAACACACAACGC-AATAGAAAATATAGT-GTA-A-TT--TACA-CTGTTT--TGTTTAGA---ATTTTT-C-ATTAAGTTCATGGGTTATATATGAA-TTTTTGTTTTCTGACGCAATTGCC-TG-ATTTC-GTAGT--AAACAAC-CATAATC-AATTT--AC---GC------GTAA-GACGGCAAGCGAATGACGAT---TTA--A---A--GAGTATGATCTTCTA---GCTTTTTGAAGAGGAGCTAA-CGAATCATGACACCTAG-CTACCAAATACTAACGAT
gi|4 : -------TGAAAAGATTTTCTAACATTGGCTAGTCTTTACTT--A-ATAAACATG-A---TT-GT-ATGA-GTGA-AAGTTAAT--TTGCATAAAATA------A---AAAA-A-ATTGTCTTTG-TAATTTTTTTTTCTTT------------GT-TAAGAAAT----------------------GTGCATGGA-CGTGTTTTATTACCCG--C-TTAT-CGT-CTT---TGTGGGTGCT----TT----G-TGACGTCACAAAGACCCATCGATGAA-ACACAACGC-AATAGAAAATATAGT-GTA-A-TT--TACA-CTGTTTGTTGTTTAG-----TTTTT-C-ATAAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGTAAA--CAAC-CATA-TC-AATTTAAAC---ACCA-GAAATAATGACGGCAAGCGAATGACGAT---TT---A---A-AGAGTATGG-CTTCTCTGTGCTTTTTGAAGAGGAGCTAACCGAATCATGACACCTAGCCTACCAAAAGCTAACGATAATTaa
gi|5 : AT-------TGAAACAATTT-T--ACATTGG-TA--TTTAACTTTTA-ATAAACATGGAAGATTAGTAATGA-ATGGTAAGTAAAA--TTGCATAAAAT-------A---AAAA-ATATTGTC-TTG-TA------------TT------------GT-TAAGAAATA-------AA-CTGTTCAACTTGTGCATGGAACGAATTT-ATTA-CCG--CGTTAT-CGTTCTTGATTGTGGGTGCT----T-----ATTGAC-TCACAAAGACGCATCCTTGAA-A-ACAACGC-A-TAGAATAAA--GTGGTA-AGTT--TACATCTGTTT--CGTTTAAAGAAATTCCTGCAATTAA-TTTAATGGTTATAT-TGAACTTTTTCGTTTCTGAC-TAATTGCCATGAATTTCAGTAGT--A--CAGCGCATA-TCAAGTTTGAACGCAGCCAGGAAATAATAACGACAAGCGAATG-------------A---A-AGAGGATGATCTAGCG---GCTTCTTGAAGAGG------------CATGACCCCT---CTACCAAATACTTACGATTAt
gi|6 : TTGG-TA--TTTTACTTT-ATATAAACATA-AAGATTAGT-ATTA-ATGA-AAGTTAAA--AAGCATAAAAT-------A---AAAA-ATGCTGTCTTTG-CA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAATTTGTGCATGAAACGAATTT-ATTACTCG--C-TTAT-CGTTCTTGATTATGGGTACT----T-----G-TGACGTCAAAAAGACCCATCGATGAA-A-ACAACGT-A-CAGAAAATA--GT-GTA-A-TT--TATA-CTGTTT--TGTTTAAAGAAATGTCT-C-ATT-A-TT--ATGGATATACATGAA-TCTTTGTTTTCTGAC-AAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CATCCA-GGA
gi|7 : TGA-TA--TTTTACTTT-A--TAGACAAT-AAGATTGCT-GTGA-ATGA-AAGTTAAA--TTGCGTATAATGTAAAACA---AAAA-ATATA-----TG-TA------------TT------------GTCTATGCAATACAAACTGAAGCTG-TAAACTTGTAAATG---------T-ATTACCCG--C-TTAT-CGTTCTTGATT---GAT--------------------TCACAAAGACCCATCGATGTA-A-ACAACGC-A-ATGAAAATA--GA-GCA-A-CTA-CACA-CCGTAT--TGTg
gi|9 : taaggcattatgaaattatatcagtctaTGCGTAGAA--------G---AAAA-ACATCGCCATTG-TA------------TT------------GG-TATGAAATG-------AATCTG-TAAATTTATA-----AATGAACAT-GTTCCCAG--C-TTAT-CATTCTTTATTATGTGTGTT----TACTTTG-TGACGTCATAAAAACCCTTCGATGAT-A-ACAAAACAA-TA-AAAATA--AT-GTA-A-TTG-TACG-CCGTTT--TGGTGAACGAAA--TCT-C-ATTCA-TTGTATGGATATCGATGAA-TTTCTGTTTTCTGA--CAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAGCTGATTTTTTCCTCTGTTGCTGATTTACACGTAAAAGTGATTGTCTGAGAAAAGATCTCGGTCAAAAATTAATATATACAGAAAAAACAATAGTCTATAAAGAAAGCGCTATATGAGTATGGGCATTAATAAAAAGACCTCAGTCAAAGAAATAGTATATACAGAAAAAAACCAATATACAGAAAAAACAATATGAGTATAGGCATTAATAAAAATATCTCAGTCAAAGAAATAG
Unaligned ( gi|13 ): CAGCTGTGTTTCCTCTATTACGATTTAACCGTAAAAAGTGATTTGTCTGAGAAAAGATCTCGGTCAAAGAAATAATACATACAGAAAAAACAATAGTCTATAAAGAAAACGCCCTATGAGTATGGGCATTAATAA
Unaligned ( gi|17 ): AGCTGTGTTTCCTCTATTCACGATTTACACGTAAAAGTGATTGTCTGAGAAAAGATCTCGGTCAAAGAAATAATACATACAGAAAAAACAATAGTCTATAAAGAAAACGC
Alignments
lowQualScore : 1 22222222 1 11 3333333333333333333 11 22222222 11 22222222222 33333333333333333333333333 33333333333 2222222222 11 11 22222222
lowQualScore : 1 3 44444444 0 33 1 2 22 9999999999999999999 33 2 22222222 5 8 0 5 77 00 5 5 8 7 5 5 99 77 44444444444 5 2 3 5 33333333333333333333333333 5 0 00000000000 5 0 1 6 3 5 66 5 5 1 4444444444 4 1 4 8 4 8 22 4 4 4 33 3 55 0 4 4 4 3 4 4 4 4 4 55 55 4 4 4 55 3 0 3 0 44444444 888 5 3 888 5 0 5
lowQualScore : . . ........ . .. . . .. ................... .. . ........ . . . . .. .. . . . . . . .. .. ........... . . . . .......................... . . ........... . . . . . . .. . . . .......... . . . . . . .. . . . .. . .. . . . . . . . . . . .. .. . . . .. . . . . ........ ... . . ... . . .
lowQualScore : 0 3 00000000 0 88 0 5 88 0000000000000000000 22 5 55555555 2 0 8 7 99 77 7 7 7 1 7 7 77 99 11111111111 0 2 4 0 22222222222222222222222222 0 5 00000000000 0 2 4 2 4 0 99 0 0 1 0000000000 4 1 4 9 4 9 22 4 0 0 55 3 00 7 0 0 0 9 0 0 4 4 4 55 55 0 0 0 00 6 8 3 1 66666666 888 0 2 888 7 7 7
consensus : NNNNNNNNNNNNNNNNGATCTCAGNA-TGGT--GT----ATACAGAAAA-CA--ATGATNTGATTACAGGCATGAAT-TANAANGAAAATC----TTCA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTTT-A-ATAAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGCATAAAATA------A---AAAA-ATATTGTCTTTG-TA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGAT---TTA--A---A-AGAGGATGATCTTCTA---GCTTCTTGAAGAGGAGCTAA-CGAATCATGACCCCTAG-CTACCAAATACTAACGATTATT
Reference ( family-2168 ) : NNNNNNNNNNNNNNNNGATCTCAGNA-TGGT--GT----ATACAGAAAA-CA--ATGATNTGATTACAGGCATGAAT-TANAANGAAAATC----TTCA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTTT-A-ATAAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGCATAAAATA------A---AAAA-ATATTGTCTTTG-TA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGAT---TTA--A---A-AGAGGATGATCTTCTA---GCTTCTTGAAGAGGAGCTAA-CGAATCATGACCCCTAG-CTACCAAATACTAACGATTATT
gi|1 : GATCTCAATA-TGGCAAGTCCAAATACAGTTAA-CATTATAAGTT--TTACA--TTTGAATATATAACGAAAATC----TTTA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTT--A-ATAAACATG-ATGATTAGT-ATGA-TTGG-AAGTTAAA--TTGCATAAAATA------A---AAAA-ATATTGTCTTTG-TA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----G-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-T-TAGAAAATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTAC-TTTAATGGTTCTATATGAA-TTTTTGTTTTCTCAC-CAATTGCC-TG-ATTTC-ATAGT--A--CAGC-CATA-TC-AGTTTGAAT-CAGCCA-GAAATAATGACAGCAAGCAAATGACGATTTATTA--A---A-AGAGGATGATCTTCTA---TATTCTTGAAGAGGAGCTAA-CAAATCATGACCCCTAG-CTACCAAATACTTACGATTATT
gi|10 : ttgtaattatgagccc-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTT-T-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-AATTC-GTAGT--A--CAGC-CATA-TC-AATTTAAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGAT---TT---A---A-AGAGTATGATCTTCTA---GCTTTTTGAAGAGGGGCTAA-CGAATCATGACACCTAG-CTACCAAATACTAACGAT
gi|11 : GT--AT----ATACAGAAGA-CA--ATGATATGATTATAGGCATGAA---------AAAGT-----TTCA----GTCAA--------TGAAATAGTaa
gi|12 : aaaatacctcagtcaaagaattagtatataaaaaaaaccaaaatggattataggtataaagaactgtcgaagaaataaaTTTCTGAC-AAACTACT-TG-ATTTC-ATGGT--A--CA-C-CATA-TC-AGTTTGAAC-CAGTCA-GAAATAAAGACAGCAAGCGAATAACAGTTC-TTG--A---ACAGAAGATGA-------------TCTTGAAGAGGAACgtatattaata
gi|14 : CA-CTGTTT--TGTTTAAAGAATTCCCT-C-ATTGT-TTTAATAGATATACATGAA-TCTTTGTTTTCTGAC-GAGTTGAC-TG-ATTTC-GTAGT--T--CAGC-CATA-TA-AGTTTGAAC-CAGCCA-GAAATAATGACAGTCAGCCAATGcctagccatcaggtacagtcgtttaacg
gi|15 : TTCT--ATTGGTGGTACTCCTTT-----G-TGACTTCACAAAAGACCATCTATGAA-A-ACAAAAC-A-ATGAAAATA--TT-TTATA-TCTGTACA-CCATT
gi|16 : atgacctataatatattgtaggaaatgttcgcccaa--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAA------CGACAAGCGAATGATGAT---TTATTATTTA-AGAGGATGATCTTCTA---GCTTCTGGAGGAGGAGCTAA-CGAATCATGACCCCTAG-CTAC
gi|18 : TTGAAC-CAGCCA-GAAA-----------------------------A--A---A-AGAGGATGATCTTCTA---ACTTCTTGAAGAGGAGCTAA-CGAATGATGGCCCCTAG-CTACCAAATACTAACGATTAT
gi|19 : -CTGTTT--TGGTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTCGTTTTCT
gi|2 : AGAAGTAGT--AT----GTACAGAAAAACA--ATGATATGATCACAGACATGGA--TAAAAAGA
gi|2 : tgtgttttatatgttcgcgactaacatgtaacagtgactgtgtgagaaaatagctcagtgatGATCTCAGGA-TGGT--GT----ATACAGAAAA-CA--ATGATTTGATTATAGGCATGAAT-TAAAAGGA----T----TTTA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTAC-TT-G-ATTAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGCATAAAATA------AAATAAAA-ATATTGCCTTTG-CA------------TT---------------------------------GCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----G-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TGTA-CTGTTT--TGTTTAAAGAAATTTAT-C-ATCAC-TTTAATGGTTTTATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-CG-GTTTC-GTAGT--A--CAGC-CATA-TC-AGTT---------------AATAATAACGGCACGCGAATtctcaggatggtgtatacagaaaacaatgatttgattataggcatgaattaaaaggattttaaaggtcaattgaaacaatttctaacattggtattttacttgattaacatgaagattagtatgaatggaagttaaattgcataaaataaaataaaaatattgcctttgcattgctgtaaacttgtgcatggaacgaatttattacccgcttatcgttcttgattgtgggtgctggtgacgtcacaaagacccatcgatgaaaacaacgcatagaaaatagtgtaatttgtactgttttgtttaaagaaatttatcatcactttaatggttttatatgaatttttgttttctgaccaattgcccggtttcgtagtacagccatatcagttaataataacggcacgcgaat
gi|3 : tgtgttttatatgttcgcgactaacatgtaacagtgactgtgtgagaaaatagctcagtgatagaagtagtatgtacagaaaaacaatgatatgatcacagacatggataaaaaAT-CATAAC--AAATCCCTGTTCAGAAGGT-AATGTATATATGAAA-AATTT-CTAAAATTGG-T---TTTAACTTT-A-ATAAACATG-A---TT-GT-ATGAGATG--AAGTTAAAGTTTGCATACAATA------A---AAAAGAAATTGTCTTTGATA------------TTTTTTTTTTCTTTGT-TAAGAAAT----------------------GTGCATGGA-CG--TTT-TTTACCCAGAC-TTATTCGTC--TGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAACACACAACGC-AATAGAAAATATAGT-GTA-A-TT--TACA-CTGTTT--TGTTTAGA---ATTTTT-C-ATTAAGTTCATGGGTTATATATGAA-TTTTTGTTTTCTGACGCAATTGCC-TG-ATTTC-GTAGT--AAACAAC-CATAATC-AATTT--AC---GC------GTAA-GACGGCAAGCGAATGACGAT---TTA--A---A--GAGTATGATCTTCTA---GCTTTTTGAAGAGGAGCTAA-CGAATCATGACACCTAG-CTACCAAATACTAACGAT
gi|4 : -------TGAAAAGATTTTCTAACATTGGCTAGTCTTTACTT--A-ATAAACATG-A---TT-GT-ATGA-GTGA-AAGTTAAT--TTGCATAAAATA------A---AAAA-A-ATTGTCTTTG-TAATTTTTTTTTCTTT------------GT-TAAGAAAT----------------------GTGCATGGA-CGTGTTTTATTACCCG--C-TTAT-CGT-CTT---TGTGGGTGCT----TT----G-TGACGTCACAAAGACCCATCGATGAA-ACACAACGC-AATAGAAAATATAGT-GTA-A-TT--TACA-CTGTTTGTTGTTTAG-----TTTTT-C-ATAAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGTAAA--CAAC-CATA-TC-AATTTAAAC---ACCA-GAAATAATGACGGCAAGCGAATGACGAT---TT---A---A-AGAGTATGG-CTTCTCTGTGCTTTTTGAAGAGGAGCTAACCGAATCATGACACCTAGCCTACCAAAAGCTAACGATAATTaa
gi|5 : AT-------TGAAACAATTT-T--ACATTGG-TA--TTTAACTTTTA-ATAAACATGGAAGATTAGTAATGA-ATGGTAAGTAAAA--TTGCATAAAAT-------A---AAAA-ATATTGTC-TTG-TA------------TT------------GT-TAAGAAATA-------AA-CTGTTCAACTTGTGCATGGAACGAATTT-ATTA-CCG--CGTTAT-CGTTCTTGATTGTGGGTGCT----T-----ATTGAC-TCACAAAGACGCATCCTTGAA-A-ACAACGC-A-TAGAATAAA--GTGGTA-AGTT--TACATCTGTTT--CGTTTAAAGAAATTCCTGCAATTAA-TTTAATGGTTATAT-TGAACTTTTTCGTTTCTGAC-TAATTGCCATGAATTTCAGTAGT--A--CAGCGCATA-TCAAGTTTGAACGCAGCCAGGAAATAATAACGACAAGCGAATG-------------A---A-AGAGGATGATCTAGCG---GCTTCTTGAAGAGG------------CATGACCCCT---CTACCAAATACTTACGATTAt
gi|6 : TTGG-TA--TTTTACTTT-ATATAAACATA-AAGATTAGT-ATTA-ATGA-AAGTTAAA--AAGCATAAAAT-------A---AAAA-ATGCTGTCTTTG-CA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAATTTGTGCATGAAACGAATTT-ATTACTCG--C-TTAT-CGTTCTTGATTATGGGTACT----T-----G-TGACGTCAAAAAGACCCATCGATGAA-A-ACAACGT-A-CAGAAAATA--GT-GTA-A-TT--TATA-CTGTTT--TGTTTAAAGAAATGTCT-C-ATT-A-TT--ATGGATATACATGAA-TCTTTGTTTTCTGAC-AAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CATCCA-GGA
gi|7 : TGA-TA--TTTTACTTT-A--TAGACAAT-AAGATTGCT-GTGA-ATGA-AAGTTAAA--TTGCGTATAATGTAAAACA---AAAA-ATATA-----TG-TA------------TT------------GTCTATGCAATACAAACTGAAGCTG-TAAACTTGTAAATG---------T-ATTACCCG--C-TTAT-CGTTCTTGATT---GAT--------------------TCACAAAGACCCATCGATGTA-A-ACAACGC-A-ATGAAAATA--GA-GCA-A-CTA-CACA-CCGTAT--TGTg
gi|9 : taaggcattatgaaattatatcagtctaTGCGTAGAA--------G---AAAA-ACATCGCCATTG-TA------------TT------------GG-TATGAAATG-------AATCTG-TAAATTTATA-----AATGAACAT-GTTCCCAG--C-TTAT-CATTCTTTATTATGTGTGTT----TACTTTG-TGACGTCATAAAAACCCTTCGATGAT-A-ACAAAACAA-TA-AAAATA--AT-GTA-A-TTG-TACG-CCGTTT--TGGTGAACGAAA--TCT-C-ATTCA-TTGTATGGATATCGATGAA-TTTCTGTTTTCTGA--CAAT
blockSeqs : A G AT A . A G GG TCATAACAAATCCCTG GA C TGTATATA T T C GT TT T G A A A G GT GT GTAAAACA G T T A TTTTTTTTTTCTTT C ACAAACTGAAG T G A A T GA G T G TACTTT T T C C A A TA G T G TG T GT G A G C C G A A A AA AA G A A GC G T TCTTG TTT C T TGT C C
blockSeqs : G . AT . . A G GA TTAAAAGGAT A C T C . . . T . . A A . . G . AAAAT . A T . ATTTTTTTTTCTTT . AAAG . G A T . . . . G CCTTT . G . C . A TA . . . A . . . . . T . . . . . . . . . . C . A TTATT . . T . . .
blockSeqs : GT . . T G GG AAAGT . . T A . . . T . . A A . . A . AA . T T . TT . GAAT . G A A . . . . G TT . G . . . . . . . . G . . . . . C . . . . . . . . . . C . T TTA . . T . . .
blockSeqs : . C . . . T . . A G . . A . AA . T T . TT . AAA . G A A . . . . G G . G . . . . . . . . . . . . . . T . . . . . . . . . . C . T TT . . T . . .
blockSeqs : . . . T . . . . . . A . A . T A . TT . G . A . A . . . . G T . G . . . . . . . . . . . . . . C . . . . . . . . . . C . T TT . . T . . .
blockSeqs : . . . . . . . . . . . A . C . . TT . . . . . . . . . . T T . G . . . . . . . . . . . . . . C . . . . . . . . . . C . T A . . . . . .
blockSeqs : G . . . . TT . . . . . . . . . . . T . . . . . . . . . . . . . . . . T . . . . . . . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons : T* AA********* TTA*****
originalCons : NNNNNNNNNNNNNNNNGATCTCAGNA-TGGT--GT----ATACAGAAAA-CA--ATGATNTGATTACAGGCATGAAT-TANAANGAAAATC----TTCA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTTT-A-ATAAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGCATAAAATA------A---AAAA-ATATTGTCTTTG-TA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGAT---TTA--A---A-AGAGGATGATCTTCTA---GCTTCTTGAAGAGGAGCTAA-CGAATCATGACCCCTAG-CTACCAAATACTAACGATTATT
finalCons : NNNNNNNNNNNNNNNNGATCTCAGNA-TGGT--GT----ATACAGAAAA-CA--ATGATNTGATTACAGGCATGAAT-TANAANGAAAATC----TTCA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTTT-A-ATAAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGCATAAAATAA---------AAAA-ATATTGTCTTTG-TA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGATTTA-----A---A-AGAGGATGATCTTCTA---GCTTCTTGAAGAGGAGCTAA-CGAATCATGACCCCTAG-CTACCAAATACTAACGATTATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAGCTGATTTTTTCCTCTGTTGCTGATTTACACGTAAAAGTGATTGTCTGAGAAAAGATCTCGGTCAAAAATTAATATATACAGAAAAAACAATAGTCTATAAAGAAAGCGCTATATGAGTATGGGCATTAATAAAAAGACCTCAGTCAAAGAAATAGTATATACAGAAAAAAACCAATATACAGAAAAAACAATATGAGTATAGGCATTAATAAAAATATCTCAGTCAAAGAAATAG
Unaligned ( gi|13 ): CAGCTGTGTTTCCTCTATTACGATTTAACCGTAAAAAGTGATTTGTCTGAGAAAAGATCTCGGTCAAAGAAATAATACATACAGAAAAAACAATAGTCTATAAAGAAAACGCCCTATGAGTATGGGCATTAATAA
Unaligned ( gi|17 ): AGCTGTGTTTCCTCTATTCACGATTTACACGTAAAAGTGATTGTCTGAGAAAAGATCTCGGTCAAAGAAATAATACATACAGAAAAAACAATAGTCTATAAAGAAAACGC
Alignments
lowQualScore : 1 22222222 1 11 3333333333333333333 11 22222222 11 22222222222 33333333333333333333333333 33333333333 2222222222 11 11 22222222
lowQualScore : 1 3 44444444 0 33 1 2 22 9999999999999999999 33 2 22222222 5 8 0 5 77 00 5 5 8 7 5 5 99 77 44444444444 5 2 3 5 33333333333333333333333333 5 0 00000000000 5 0 1 6 3 5 66 5 5 1 4444444444 4 1 4 8 4 8 22 4 4 4 33 3 55 0 4 4 4 3 4 4 4 4 4 55 55 4 4 4 55 3 0 3 0 44444444 888 5 3 888 5 0 5
lowQualScore : . . ........ . .. . . .. ................... .. . ........ . . . . .. .. . . . . . . .. .. ........... . . . . .......................... . . ........... . . . . . . .. . . . .......... . . . . . . .. . . . .. . .. . . . . . . . . . . .. .. . . . .. . . . . ........ ... . . ... . . .
lowQualScore : 0 3 00000000 0 88 0 5 88 0000000000000000000 22 5 55555555 2 0 8 7 99 77 7 7 7 1 7 7 77 99 11111111111 0 2 4 0 22222222222222222222222222 0 5 00000000000 0 2 4 2 4 0 99 0 0 1 0000000000 4 1 4 9 4 9 22 4 0 0 55 3 00 7 0 0 0 9 0 0 4 4 4 55 55 0 0 0 00 6 8 3 1 66666666 888 0 2 888 7 7 7
consensus : NNNNNNNNNNNNNNNNGATCTCAGNA-TGGT--GT----ATACAGAAAA-CA--ATGATNTGATTACAGGCATGAAT-TANAANGAAAATC----TTCA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTTT-A-ATAAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGCATAAAATA------A---AAAA-ATATTGTCTTTG-TA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGAT---TTA--A---A-AGAGGATGATCTTCTA---GCTTCTTGAAGAGGAGCTAA-CGAATCATGACCCCTAG-CTACCAAATACTAACGATTATT
Reference ( family-2168 ) : NNNNNNNNNNNNNNNNGATCTCAGNA-TGGT--GT----ATACAGAAAA-CA--ATGATNTGATTACAGGCATGAAT-TANAANGAAAATC----TTCA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTTT-A-ATAAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGCATAAAATA------A---AAAA-ATATTGTCTTTG-TA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGAT---TTA--A---A-AGAGGATGATCTTCTA---GCTTCTTGAAGAGGAGCTAA-CGAATCATGACCCCTAG-CTACCAAATACTAACGATTATT
gi|1 : GATCTCAATA-TGGCAAGTCCAAATACAGTTAA-CATTATAAGTT--TTACA--TTTGAATATATAACGAAAATC----TTTA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTACTT--A-ATAAACATG-ATGATTAGT-ATGA-TTGG-AAGTTAAA--TTGCATAAAATA------A---AAAA-ATATTGTCTTTG-TA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----G-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-T-TAGAAAATA--GT-GTA-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTTCT-C-ATTAC-TTTAATGGTTCTATATGAA-TTTTTGTTTTCTCAC-CAATTGCC-TG-ATTTC-ATAGT--A--CAGC-CATA-TC-AGTTTGAAT-CAGCCA-GAAATAATGACAGCAAGCAAATGACGATTTATTA--A---A-AGAGGATGATCTTCTA---TATTCTTGAAGAGGAGCTAA-CAAATCATGACCCCTAG-CTACCAAATACTTACGATTATT
gi|10 : ttgtaattatgagccc-A-TT--TACA-CTGTTT--TGTTTAAAGAAATTT-T-C-ATTAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-AATTC-GTAGT--A--CAGC-CATA-TC-AATTTAAAC-CAGCCA-GAAATAATGACGGCAAGCGAATGACGAT---TT---A---A-AGAGTATGATCTTCTA---GCTTTTTGAAGAGGGGCTAA-CGAATCATGACACCTAG-CTACCAAATACTAACGAT
gi|11 : GT--AT----ATACAGAAGA-CA--ATGATATGATTATAGGCATGAA---------AAAGT-----TTCA----GTCAA--------TGAAATAGTaa
gi|12 : aaaatacctcagtcaaagaattagtatataaaaaaaaccaaaatggattataggtataaagaactgtcgaagaaataaaTTTCTGAC-AAACTACT-TG-ATTTC-ATGGT--A--CA-C-CATA-TC-AGTTTGAAC-CAGTCA-GAAATAAAGACAGCAAGCGAATAACAGTTC-TTG--A---ACAGAAGATGA-------------TCTTGAAGAGGAACgtatattaata
gi|14 : CA-CTGTTT--TGTTTAAAGAATTCCCT-C-ATTGT-TTTAATAGATATACATGAA-TCTTTGTTTTCTGAC-GAGTTGAC-TG-ATTTC-GTAGT--T--CAGC-CATA-TA-AGTTTGAAC-CAGCCA-GAAATAATGACAGTCAGCCAATGcctagccatcaggtacagtcgtttaacg
gi|15 : TTCT--ATTGGTGGTACTCCTTT-----G-TGACTTCACAAAAGACCATCTATGAA-A-ACAAAAC-A-ATGAAAATA--TT-TTATA-TCTGTACA-CCATT
gi|16 : atgacctataatatattgtaggaaatgttcgcccaa--A--CAGC-CATA-TC-AGTTTGAAC-CAGCCA-GAAA------CGACAAGCGAATGATGAT---TTATTATTTA-AGAGGATGATCTTCTA---GCTTCTGGAGGAGGAGCTAA-CGAATCATGACCCCTAG-CTAC
gi|18 : TTGAAC-CAGCCA-GAAA-----------------------------A--A---A-AGAGGATGATCTTCTA---ACTTCTTGAAGAGGAGCTAA-CGAATGATGGCCCCTAG-CTACCAAATACTAACGATTAT
gi|19 : -CTGTTT--TGGTTAAAGAAATTTCT-C-ATTAA-TTCAATGGTTATATATGAA-TTTTCGTTTTCT
gi|2 : AGAAGTAGT--AT----GTACAGAAAAACA--ATGATATGATCACAGACATGGA--TAAAAAGA
gi|2 : tgtgttttatatgttcgcgactaacatgtaacagtgactgtgtgagaaaatagctcagtgatGATCTCAGGA-TGGT--GT----ATACAGAAAA-CA--ATGATTTGATTATAGGCATGAAT-TAAAAGGA----T----TTTA-AAGGTCAAT-------TGAAACAATTT-CTAACATTGG-TA--TTTTAC-TT-G-ATTAACATG-AAGATTAGT-ATGA-ATGG-AAGTTAAA--TTGCATAAAATA------AAATAAAA-ATATTGCCTTTG-CA------------TT---------------------------------GCTG-TAAACTTGTGCATGGAACGAATTT-ATTACCCG--C-TTAT-CGTTCTTGATTGTGGGTGCT----G-----G-TGACGTCACAAAGACCCATCGATGAA-A-ACAACGC-A-TAGAAAATA--GT-GTA-A-TT--TGTA-CTGTTT--TGTTTAAAGAAATTTAT-C-ATCAC-TTTAATGGTTTTATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-CG-GTTTC-GTAGT--A--CAGC-CATA-TC-AGTT---------------AATAATAACGGCACGCGAATtctcaggatggtgtatacagaaaacaatgatttgattataggcatgaattaaaaggattttaaaggtcaattgaaacaatttctaacattggtattttacttgattaacatgaagattagtatgaatggaagttaaattgcataaaataaaataaaaatattgcctttgcattgctgtaaacttgtgcatggaacgaatttattacccgcttatcgttcttgattgtgggtgctggtgacgtcacaaagacccatcgatgaaaacaacgcatagaaaatagtgtaatttgtactgttttgtttaaagaaatttatcatcactttaatggttttatatgaatttttgttttctgaccaattgcccggtttcgtagtacagccatatcagttaataataacggcacgcgaat
gi|3 : tgtgttttatatgttcgcgactaacatgtaacagtgactgtgtgagaaaatagctcagtgatagaagtagtatgtacagaaaaacaatgatatgatcacagacatggataaaaaAT-CATAAC--AAATCCCTGTTCAGAAGGT-AATGTATATATGAAA-AATTT-CTAAAATTGG-T---TTTAACTTT-A-ATAAACATG-A---TT-GT-ATGAGATG--AAGTTAAAGTTTGCATACAATA------A---AAAAGAAATTGTCTTTGATA------------TTTTTTTTTTCTTTGT-TAAGAAAT----------------------GTGCATGGA-CG--TTT-TTTACCCAGAC-TTATTCGTC--TGATTGTGGGTGCT----T-----G-TGACGTCACAAAGACCCATCGATGAACACACAACGC-AATAGAAAATATAGT-GTA-A-TT--TACA-CTGTTT--TGTTTAGA---ATTTTT-C-ATTAAGTTCATGGGTTATATATGAA-TTTTTGTTTTCTGACGCAATTGCC-TG-ATTTC-GTAGT--AAACAAC-CATAATC-AATTT--AC---GC------GTAA-GACGGCAAGCGAATGACGAT---TTA--A---A--GAGTATGATCTTCTA---GCTTTTTGAAGAGGAGCTAA-CGAATCATGACACCTAG-CTACCAAATACTAACGAT
gi|4 : -------TGAAAAGATTTTCTAACATTGGCTAGTCTTTACTT--A-ATAAACATG-A---TT-GT-ATGA-GTGA-AAGTTAAT--TTGCATAAAATA------A---AAAA-A-ATTGTCTTTG-TAATTTTTTTTTCTTT------------GT-TAAGAAAT----------------------GTGCATGGA-CGTGTTTTATTACCCG--C-TTAT-CGT-CTT---TGTGGGTGCT----TT----G-TGACGTCACAAAGACCCATCGATGAA-ACACAACGC-AATAGAAAATATAGT-GTA-A-TT--TACA-CTGTTTGTTGTTTAG-----TTTTT-C-ATAAA-TTCAATGGTTATATATGAA-TTTTTGTTTTCTGAC-CAATTGCC-TG-ATTTC-GTAGTAAA--CAAC-CATA-TC-AATTTAAAC---ACCA-GAAATAATGACGGCAAGCGAATGACGAT---TT---A---A-AGAGTATGG-CTTCTCTGTGCTTTTTGAAGAGGAGCTAACCGAATCATGACACCTAGCCTACCAAAAGCTAACGATAATTaa
gi|5 : AT-------TGAAACAATTT-T--ACATTGG-TA--TTTAACTTTTA-ATAAACATGGAAGATTAGTAATGA-ATGGTAAGTAAAA--TTGCATAAAAT-------A---AAAA-ATATTGTC-TTG-TA------------TT------------GT-TAAGAAATA-------AA-CTGTTCAACTTGTGCATGGAACGAATTT-ATTA-CCG--CGTTAT-CGTTCTTGATTGTGGGTGCT----T-----ATTGAC-TCACAAAGACGCATCCTTGAA-A-ACAACGC-A-TAGAATAAA--GTGGTA-AGTT--TACATCTGTTT--CGTTTAAAGAAATTCCTGCAATTAA-TTTAATGGTTATAT-TGAACTTTTTCGTTTCTGAC-TAATTGCCATGAATTTCAGTAGT--A--CAGCGCATA-TCAAGTTTGAACGCAGCCAGGAAATAATAACGACAAGCGAATG-------------A---A-AGAGGATGATCTAGCG---GCTTCTTGAAGAGG------------CATGACCCCT---CTACCAAATACTTACGATTAt
gi|6 : TTGG-TA--TTTTACTTT-ATATAAACATA-AAGATTAGT-ATTA-ATGA-AAGTTAAA--AAGCATAAAAT-------A---AAAA-ATGCTGTCTTTG-CA------------TT------------GT-TAAGAAATA-------AAGCTG-TAAATTTGTGCATGAAACGAATTT-ATTACTCG--C-TTAT-CGTTCTTGATTATGGGTACT----T-----G-TGACGTCAAAAAGACCCATCGATGAA-A-ACAACGT-A-CAGAAAATA--GT-GTA-A-TT--TATA-CTGTTT--TGTTTAAAGAAATGTCT-C-ATT-A-TT--ATGGATATACATGAA-TCTTTGTTTTCTGAC-AAATTGCC-TG-ATTTC-GTAGT--A--CAGC-CATA-TC-AGTTTGAAC-CATCCA-GGA
gi|7 : TGA-TA--TTTTACTTT-A--TAGACAAT-AAGATTGCT-GTGA-ATGA-AAGTTAAA--TTGCGTATAATGTAAAACA---AAAA-ATATA-----TG-TA------------TT------------GTCTATGCAATACAAACTGAAGCTG-TAAACTTGTAAATG---------T-ATTACCCG--C-TTAT-CGTTCTTGATT---GAT--------------------TCACAAAGACCCATCGATGTA-A-ACAACGC-A-ATGAAAATA--GA-GCA-A-CTA-CACA-CCGTAT--TGTg
gi|9 : taaggcattatgaaattatatcagtctaTGCGTAGAA--------G---AAAA-ACATCGCCATTG-TA------------TT------------GG-TATGAAATG-------AATCTG-TAAATTTATA-----AATGAACAT-GTTCCCAG--C-TTAT-CATTCTTTATTATGTGTGTT----TACTTTG-TGACGTCATAAAAACCCTTCGATGAT-A-ACAAAACAA-TA-AAAATA--AT-GTA-A-TTG-TACG-CCGTTT--TGGTGAACGAAA--TCT-C-ATTCA-TTGTATGGATATCGATGAA-TTTCTGTTTTCTGA--CAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAGCTGATTTTTTCCTCTGTTGCTGATTTACACGTAAAAGTGATTGTCTGAGAAAAGATCTCGGTCAAAAATTAATATATACAGAAAAAACAATAGTCTATAAAGAAAGCGCTATATGAGTATGGGCATTAATAAAAAGACCTCAGTCAAAGAAATAGTATATACAGAAAAAAACCAATATACAGAAAAAACAATATGAGTATAGGCATTAATAAAAATATCTCAGTCAAAGAAATAG
Unaligned ( gi|13 ): CAGCTGTGTTTCCTCTATTACGATTTAACCGTAAAAAGTGATTTGTCTGAGAAAAGATCTCGGTCAAAGAAATAATACATACAGAAAAAACAATAGTCTATAAAGAAAACGCCCTATGAGTATGGGCATTAATAA
Unaligned ( gi|17 ): AGCTGTGTTTCCTCTATTCACGATTTACACGTAAAAGTGATTGTCTGAGAAAAGATCTCGGTCAAAGAAATAATACATACAGAAAAAACAATAGTCTATAAAGAAAACGC