lowQualScore : 1111111111 1111 1 222222222222222222222 3333333333333 22222 333
lowQualScore : 777777 1111111111 0 8888 3 999999999999999999999 22 2 5 3333333333333 11111 3 888
lowQualScore : ...... .......... . .... . ..................... .. . . ............. ..... . ...
lowQualScore : 777777 3333333333 1 7777 0 666666666666666666666 99 1 0 2222222222222 22222 0 555
consensus : GGACTATATTTA------TCAAA---------ATTCATACGCGC--ATTGTTCACAG--N--T--GC-A----NCGCA--TTC-ATGAGGAA-ATGGCT---A---AT----ATTATTAC-GTTAAACNATCAGAGGATGTA
Reference ( gi|2 ) : GGACTATATTTA------TCAAG---------ATTCATACGCGC--TTTGTTAACAG--A--T--GC-A----ATGAA--TTC-ATGAGGAA-ATGGCT---A---AT----ATCATTAC-ATTAAACAA-T-GAGAATGTATGACATTGTATTTCAGCAATTAATATTTTGAATATTTC
gi|22 : GGATTATATTTA------TCAAA---------ATTCATACGCGA--ATTGTTCACAA--C--T--GC-A----CCGCA--TTC-
gi|9 : gacGAACTACATTTT------TCAAG---------ATTCATGCGCAA--ATTGTTAACAA--C--T--GC-T----CAGCA--TTC-AT
gi|17 : aatggacGGACTACATCTACTAGTATCAAG---------ATTCAT----------TGTTTACAA--C--T--AT-A----GGGCG--TTC-ATGAGGAA-ATGGcattacaattttgtatacagataccataggcaaaaaacatcagaaatgtaaatat
gi|19 : agacACTATATTTA------TTAAG---------ATTCATACGCAC--ACAGTTCACAG------------------------TC-ATGAGAAA-ATGGCT---A---
gi|6 : aACTATATTTA------TCAAA---------ATTCATGCGCGCAATTTGTATACAG--C--T--GC-A----CGGAA--TTC-AAGAAGCGTCTGTCT---G---TT----ATCATTtcgttt
gi|18 : atgccgcACTATATTTA------TCAAG---------ACTCATGCGCAT--ATTGTTCACAT--T--T--GC-A----TCGCA--TTC-TTGAGGAtgtagggatatcaacgacaaaaacattggaaatgtacatatata
gi|7 : cgcACTACATCTA------TTAAA---------ATTCATACGCG----TTGTTCACAACTA--T--GT-AGCATATGTA--T---ATGAGGAA-ATca
gi|3 : taaaatagacgtACTATATTTA------TCCAATTGTTCTCTATCCATACGCGT--ATTGTTTACAA--A--T--AC-A----GCGCG---TC-ATGAGGAA-ATACCTGTCA---GT----ATCA-AAG-GCCAAACCATT-GAAAATGTAttaaattgtgatggtatctatggggagagaacattggaaatgtaaatac
gi|4 : ccgttaaaatagacagcgtACTATATCCA------TCAAC---------ATTCATACAAGC--ATTGCGCACAA--T--T--GCTAAT--ATGCA--TTC-ACGAAGAA-ATGaataca
gi|8 : ttaagatatacgcACCATATTGA------TCAAA---------AGTCATCAGCGA--ATTGTTCACAT--C--T--GC-A----TTGCG--TTC-ATTAGGAA-ATagttgaaaagtaatatcaaagacaagaacgttgcaagaatgtaaatactcatc
gi|16 : aaacagacgcACTATATTCA------T-GAC---------ACTTATCCACAC--ATTGTTCACAT--T--G--GT-A----TCGCA--TTC-ATGAGGAA-ATGtgtattaagtaaaaatactgaaggcaaacccattagaaatgtaaacaga
gi|1 : gaggcgcCTATAATCA------TTAAA---------ATTCACA-GTGC--ACTGTTTACAG--C--T--GC-G----GTGCA--TTC-GTGATGAA-ATGGCT---ATACATGTGCATTATTACAATTATACAA-CAGAGGATG
gi|5 : aatgttTATATATA------TTAAA---------ATTCATATGCGC--ATCTTTCACAG--A--T--GC-A----GTGCA--TCC-ATGAGAAA-ATAACT---ACC-AT----ATTAT--C-ATTAAggcaaattatcatacaatatctttttgcattgatacgtcttgcacaatttc
gi|11 : tacatgcactaTATATTCA------TCAAA---------ATTCATACACGT--ATTTTTCACA---A--T-----------TGAA--TTC-A-----AA-ATGGC----A---AT----ATTATtaaatacttcaatggggggaaactttggaaatgtaaatc
gi|14 : TATTT-------CCAAG---------ATCCATACGCCC--ATTGTTACTAA--C--T--GC-A----ACGCA--TTCAATGAGGAG-ATGGataattcatagagatatcaaaggcaaaaacattggaa
gi|15 : atagatgcac---------ACTCATGCGCGC--ATTGTTCACAG--A--T--GC-T----GGGCA--TTC-ATGAGGAA-ATGG
gi|20 : ccgttataaatagtcgaact---------ATTCAAACGCAC--ATTGTTTGCAG--AATTCAGC-A----CTGCA--TTC-ATGAGGAA-AT
gi|12 : atttttctgtTTCATACGCAC--ATTGTTCAAAA--G--T--AA-A----ACGCA--TTC-ACGAAGAAGATG
gi|24 : TCATGCGCTC--ATTGTTCACAG--C--T--GC-------TGGACATTC-ATGAGGAA-ATGGccaaaggcaaaatatttgaaatgtaaatatcacttaatgtt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): CAGCACTATGATATCAAATTAAATGCGCATTTTTCACACTGCAGTGCATTTTGAAGAATGACTACCTTTACGTTGGTAAAGGTATCGAAATTAAAACATTGGATATGTAGAT
Unaligned ( gi|13 ): TTGTTCACAACTTCCTTGCATTTATGAAGAAAATTGGTAGAGATATCGACGGCAAAATCATTGAAAATGTAAATTTTAGAAA
Unaligned ( gi|21 ): ATTAAAATAAGCGCACTACATTTACTCGGATTCATACGCGCATTAATCACAACTATAT
Unaligned ( gi|23 ): ACAATTTTGTAAGGATATCAAAGGCAAAATTATTGGAAATGTAAATATATG
Alignments
lowQualScore : 111111111 111111 33333333 1111 11 33333
lowQualScore : 666666 000000000 22 1 000000 22 1 9999 1 1 1 2 33 00000000 2222 22 6 77 22222 2
lowQualScore : ...... ......... .. . ...... .. . .... . . . . .. ........ .... .. . .. ..... .
lowQualScore : 111111 888888888 44 7 666666 44 8 7777 8 8 8 2 11 44444444 1111 55 7 00 88888 0
consensus : GGACTATATTTA------TCAAA---------ATTCATACGCGCA--TTGTTCAC-AG--C--T--GC-A--NCGCAT-T-C-ATGAGGAA-A--TGGCT---A---AT----ATCATTAC-GTTAAACAATCA--GAGAATGTA
Reference ( family-210 ) : GGACTATATTTA------TCAAA---------ATTCATACGCGCA--TTGTTCAC-AG--N--T--GC-A--NCGCAT-T-C-ATGAGGAA-A--TGGCT---A---AT----ATTATTAC-GTTAAACNATCA--GAGGATGTA
gi|1 : CTATAATCA------TTAAA---------ATTCACA-GTGCA--CTGTTTAC-AG--C--T--GC-G--GTGCAT-T-C-GTGATGAA-A--TGGCT---ATACATGTGCATTATTACAATTATACAA-CA--GAGGATG
gi|10 : aatgttTA------TCAAA-----------TTAAATGCGCA--TTTTTCAC-A---C--T--GC-A--GTGCAT-T-T--TGAAG-A-A--TGAC---------T----ACCTTTAC-GTTggcaaattatcatacaatatctttttgcattgatacgtcttgcacaatttc
gi|11 : cagcactatgaTATATTCA------TCAAA---------ATTCATACACGTA--TTTTTCAC-AA--T--T--G--A------AT-T-C-A-----AA-A--TGGC----A---AT----ATTATggtaaaggtatcgaaattaaaacattggatatgtagat
gi|12 : TTCATACGCACA--TTGTTCAA-AA--G--T--AA-A--ACGCAT-T-C-ACGAAGAAGA--TGataattcatagagatatcaaaggcaaaaacattggaa
gi|13 : --TTGTTCAC-AA--C--T--TC-C--TTGCAT-T-T-ATGAAGAA-AATTGG-T---AGAGAT----ATCG--AC-GGCAAA--ATCATTGAAAATGTAccaaaggcaaaatatttgaaatgtaaatatcacttaatgtt
gi|14 : TATTT-------CCAAG---------ATCCATACGCCCA--TTGTT-ACTAA--C--T--GC-A--ACGCAT-T-CAATGAGGAG-A--TGGaattttagaaa
gi|15 : atagatgcac------TCGAACT-------ACTCATGCGCGCA--TTGTTCAC-AG--A--T--GC-T--GGGCAT-T-C-ATGAGGAA-A--TGG
gi|16 : ccgttataaatagACTATATTCA------T-GAC---------ACTTATCCACACA--TTGTTCAC-AT--T--G--GT-A--TCGCAT-T-C-ATGAGGAA-A--TG
gi|17 : gaggcgcGGACTACATCTACTAGTATCAAG---------ATTCAT----------TGTTTAC-AA--C--T--AT-A--GGGCGT-T-C-ATGAGGAA-A--TGG
gi|18 : agacACTATATTTA------TCAAG---------ACTCATGCGCATA--TTGTTCAC-AT--T--T--GC-A--TCGCAT-T-C-TTGAGGA
gi|19 : cgcACTATATTTA------TTAAG---------ATTCATACGCACA--CAGTTCAC-AG---------------------T-C-ATGAGAAA-A--TGGCT---A---ca
gi|2 : aGGACTATATTTA------TCAAG---------ATTCATACGCGCT--TTGTTAAC-AG--A--T--GC-A--ATGAAT-T-C-ATGAGGAA-A--TGGCT---A---AT----ATCATTAC-ATTAAACAAT----GAGAATGTAtcgttt
gi|20 : ---------ATTCAAACGCACA--TTGTTTGC-AG--AATTCAGC-A--CTGCAT-T-C-ATGAGGAA-A--Ttgacattgtatttcagcaattaatattttgaatatttc
gi|21 : atttttctgtACTACATTTA------CTCGG---------ATTCATACGCGCA--TTAATCAC-AA--C--T--
gi|22 : attaaaataagcgcGGATTATATTTA------TCAAA---------ATTCATACGCGAA--TTGTTCAC-AA--C--T--GC-A--CCGCAT-T-C-atat
gi|24 : gacTCATGCGCTCA--TTGTTCAC-AG--C--T--GC-T--GGACAT-T-C-ATGAGGAA-A--TGG
gi|3 : ACTATATTTA------TCCAATTGTTCTCTATCCATACGCGTA--TTGTTTAC-AA--A--T--AC-A--GCGCG--T-C-ATGAGGAA-A--TACCTGTCA---GT----ATCA-AAG-GCCAAACCATT---GAAAATGTAa
gi|4 : ccgttaaaatagacagcgtACTATATCCA------TCAAC---------ATTCATACAAGCA--TTGCGCAC-AA--T--T--GCTAATATGCAT-T-C-ACGAAGAA-A--TGaataca
gi|5 : ttaagatatacgcTATATATA------TTAAA---------ATTCATATGCGCA--TCTTTCAC-AG--A--T--GC-A--GTGCAT-C-C-ATGAGAAA-A--TAACT---ACC-AT----ATTAT--C-ATTAAagttgaaaagtaatatcaaagacaagaacgttgcaagaatgtaaatactcatc
gi|6 : tacatgcactaACTATATTTA------TCAAA---------ATTCATGCGCGCAATTTGTATAC-AG--C--T--GC-A--CGGAAT-T-C-AAGAAGtaaatacttcaatggggggaaactttggaaatgtaaatc
gi|7 : atgccgcACTACATCTA------TTAAA---------ATTCATACGCG----TTGTTCAC-AACTA--T--GT-A--GCATATGTAT-ATGAGGAA-A--Tcgtctgtctgttatcatttgtagggatatcaacgacaaaaacattggaaatgtacatatata
gi|8 : taaaatagacgtACCATATTGA------TCAAA---------AGTCATCAGCGAA--TTGTTCAC-AT--C--T--GC-A--TTGCGT-T-C-ATTAGGAA-A--Tttaaattgtgatggtatctatggggagagaacattggaaatgtaaatac
gi|9 : aaacagacgcGAACTACATTTT------TCAAG---------ATTCATGCGCAAA--TTGTTAAC-AA--C--T--GC-T--CAGCAT-T-C-ATtgtattaagtaaaaatactgaaggcaaacccattagaaatgtaaacaga
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): ACAATTTTGTAAGGATATCAAAGGCAAAATTATTGGAAATGTAAATATATG
Alignments
lowQualScore : 111111111 11111111 22222222222222 33333
lowQualScore : 666666 000000000 22 1 11111111 1 7777 1 1 1 4 22 77777777777777 88 6 3 22222
lowQualScore : ...... ......... .. . ........ . .... . . . . .. .............. .. . . .....
lowQualScore : 111111 888888888 44 7 44444444 8 5555 8 8 8 2 99 44444444444444 44 7 2 88888
consensus : GGACTATATTTA------TCAAA---------ATTCATACGCGCA--TTGTTCAC-AG----C--TGC-A--NCGCAT-T-C-ATGAGGAA-A--TGGCT---A---AT----ATCATTAC-GTTAAACAATCA--GAGAATGTA
Reference ( family-210 ) : GGACTATATTTA------TCAAA---------ATTCATACGCGCA--TTGTTCAC-AG----C--TGC-A--NCGCAT-T-C-ATGAGGAA-A--TGGCT---A---AT----ATCATTAC-GTTAAACAATCA--GAGAATGTA
gi|1 : CTATAATCA------TTAAA---------ATTCACA-GTGCA--CTGTTTAC-AG----C--TGC-G--GTGCAT-T-C-GTGATGAA-A--TGGCT---ATACATGTGCATTATTACAATTATACAA-CA--GAGGATG
gi|10 : aatgttTA------TCAAA-----------TTAAATGCGCA--TTTTTCAC-A-----C--TGC-A--GTGCAT-T-T--TGAAG-A-A--TGAC---------T----ACCTTTAC-GTTggcaaattatcatacaatatctttttgcattgatacgtcttgcacaatttc
gi|11 : cagcactatgaTATATTCA------TCAAA---------ATTCATACACGTA--TTTTTCAC-A------------A--TTGAAT-T-C-A-----AA-A--TGGC----A---AT----ATTATggtaaaggtatcgaaattaaaacattggatatgtagat
gi|12 : TTCATACGCACA--TTGTTCAA-AA----G--TAA-A--ACGCAT-T-C-ACGAAGAAGA--TGataattcatagagatatcaaaggcaaaaacattggaa
gi|13 : --TTGTTCAC-AA----C--TTC-C--TTGCAT-T-T-ATGAAGAA-AATTGG-T---AGAGAT----ATCG--AC-GGCAA--AATCATTGAAAATGTAccaaaggcaaaatatttgaaatgtaaatatcacttaatgtt
gi|14 : TATTT-------CCAAG---------ATCCATACGCCCA--TTGTT-ACTAA----C--TGC-A--ACGCAT-T-CAATGAGGAG-A--TGGaattttagaaa
gi|15 : atagatgcac------TCGAACT-------ACTCATGCGCGCA--TTGTTCAC-AG----A--TGC-T--GGGCAT-T-C-ATGAGGAA-A--TGG
gi|16 : ccgttataaatagACTATATTCA------T-GAC---------ACTTATCCACACA--TTGTTCAC-AT----T--GGT-A--TCGCAT-T-C-ATGAGGAA-A--TG
gi|17 : gaggcgcGGACTACATCTACTAGTATCAAG---------ATTCAT----------TGTTTAC-AA----C--TAT-A--GGGCGT-T-C-ATGAGGAA-A--TGG
gi|18 : agacACTATATTTA------TCAAG---------ACTCATGCGCATA--TTGTTCAC-AT----T--TGC-A--TCGCAT-T-C-TTGAGGA
gi|19 : cgcACTATATTTA------TTAAG---------ATTCATACGCACA--CAGTTCAC-AG---------------------T-C-ATGAGAAA-A--TGGCT---A---ca
gi|2 : aGGACTATATTTA------TCAAG---------ATTCATACGCGCT--TTGTTAAC-AG----A--TGC-A--ATGAAT-T-C-ATGAGGAA-A--TGGCT---A---AT----ATCATTAC-ATTAAACAAT----GAGAATGTAtcgttt
gi|20 : ---------ATTCAAACGCACA--TTGTTTGC-AGAATTC--AGC-A--CTGCAT-T-C-ATGAGGAA-A--Ttgacattgtatttcagcaattaatattttgaatatttc
gi|21 : atttttctgtACTACATTTA------CTCGG---------ATTCATACGCGCA--TTAATCAC-AA----C--T
gi|22 : attaaaataagcgcGGATTATATTTA------TCAAA---------ATTCATACGCGAA--TTGTTCAC-AA----C--TGC-A--CCGCAT-T-C-atat
gi|24 : gacTCATGCGCTCA--TTGTTCAC-AG----C--TGC-T--GGACAT-T-C-ATGAGGAA-A--TGG
gi|3 : ACTATATTTA------TCCAATTGTTCTCTATCCATACGCGTA--TTGTTTAC-AA----A--TAC-A--GCGCG--T-C-ATGAGGAA-A--TACCTGTCA---GT----ATCA-AAG-GCCAAACCATT---GAAAATGTAa
gi|4 : ccgttaaaatagacagcgtACTATATCCA------TCAAC---------ATTCATACAAGCA--TTGCGCAC-AA----T--TGCTAATATGCAT-T-C-ACGAAGAA-A--TGaataca
gi|5 : ttaagatatacgcTATATATA------TTAAA---------ATTCATATGCGCA--TCTTTCAC-AG----A--TGC-A--GTGCAT-C-C-ATGAGAAA-A--TAACT---ACC-AT----ATTAT--C-ATTAAagttgaaaagtaatatcaaagacaagaacgttgcaagaatgtaaatactcatc
gi|6 : tacatgcactaACTATATTTA------TCAAA---------ATTCATGCGCGCAATTTGTATAC-AG----C--TGC-A--CGGAAT-T-C-AAGAAGCGTC--TGTCT---G---TT----ATCATTtaaatacttcaatggggggaaactttggaaatgtaaatc
gi|7 : atgccgcACTACATCTA------TTAAA---------ATTCATACGCG----TTGTTCAC-AA----CTATGT-A--GCATATGTAT-ATGAGGAA-A--Ttgtagggatatcaacgacaaaaacattggaaatgtacatatata
gi|8 : taaaatagacgtACCATATTGA------TCAAA---------AGTCATCAGCGAA--TTGTTCAC-AT----C--TGC-A--TTGCGT-T-C-ATTAGGAA-A--Tttaaattgtgatggtatctatggggagagaacattggaaatgtaaatac
gi|9 : aaacagacgcGAACTACATTTT------TCAAG---------ATTCATGCGCAAA--TTGTTAAC-AA----C--TGC-T--CAGCAT-T-C-ATtgtattaagtaaaaatactgaaggcaaacccattagaaatgtaaacaga
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): ACAATTTTGTAAGGATATCAAAGGCAAAATTATTGGAAATGTAAATATATG
Alignments
lowQualScore : 111111111 11111111 22222222222222 33333
lowQualScore : 666666 000000000 22 1 11111111 1 7777 1 1 1 4 22 77777777777777 88 6 3 22222
lowQualScore : ...... ......... .. . ........ . .... . . . . .. .............. .. . . .....
lowQualScore : 111111 888888888 44 7 44444444 8 5555 8 8 8 2 99 44444444444444 44 7 2 88888
consensus : GGACTATATTTA------TCAAA---------ATTCATACGCGCA--TTGTTCAC-AG----C--TGC-A--NCGCAT-T-C-ATGAGGAA-A--TGGCT---A---AT----ATCATTAC-GTTAAACAATCA--GAGAATGTA
Reference ( family-210 ) : GGACTATATTTA------TCAAA---------ATTCATACGCGCA--TTGTTCAC-AG----C--TGC-A--NCGCAT-T-C-ATGAGGAA-A--TGGCT---A---AT----ATCATTAC-GTTAAACAATCA--GAGAATGTA
gi|1 : CTATAATCA------TTAAA---------ATTCACA-GTGCA--CTGTTTAC-AG----C--TGC-G--GTGCAT-T-C-GTGATGAA-A--TGGCT---ATACATGTGCATTATTACAATTATACAA-CA--GAGGATG
gi|10 : aatgttTA------TCAAA-----------TTAAATGCGCA--TTTTTCAC-A-----C--TGC-A--GTGCAT-T-T--TGAAG-A-A--TGAC---------T----ACCTTTAC-GTTggcaaattatcatacaatatctttttgcattgatacgtcttgcacaatttc
gi|11 : cagcactatgaTATATTCA------TCAAA---------ATTCATACACGTA--TTTTTCAC-A------------A--TTGAAT-T-C-A-----AA-A--TGGC----A---AT----ATTATggtaaaggtatcgaaattaaaacattggatatgtagat
gi|12 : TTCATACGCACA--TTGTTCAA-AA----G--TAA-A--ACGCAT-T-C-ACGAAGAAGA--TGataattcatagagatatcaaaggcaaaaacattggaa
gi|13 : --TTGTTCAC-AA----C--TTC-C--TTGCAT-T-T-ATGAAGAA-AATTGG-T---AGAGAT----ATCG--AC-GGCAA--AATCATTGAAAATGTAccaaaggcaaaatatttgaaatgtaaatatcacttaatgtt
gi|14 : TATTT-------CCAAG---------ATCCATACGCCCA--TTGTT-ACTAA----C--TGC-A--ACGCAT-T-CAATGAGGAG-A--TGGaattttagaaa
gi|15 : atagatgcac------TCGAACT-------ACTCATGCGCGCA--TTGTTCAC-AG----A--TGC-T--GGGCAT-T-C-ATGAGGAA-A--TGG
gi|16 : ccgttataaatagACTATATTCA------T-GAC---------ACTTATCCACACA--TTGTTCAC-AT----T--GGT-A--TCGCAT-T-C-ATGAGGAA-A--TG
gi|17 : gaggcgcGGACTACATCTACTAGTATCAAG---------ATTCAT----------TGTTTAC-AA----C--TAT-A--GGGCGT-T-C-ATGAGGAA-A--TGG
gi|18 : agacACTATATTTA------TCAAG---------ACTCATGCGCATA--TTGTTCAC-AT----T--TGC-A--TCGCAT-T-C-TTGAGGA
gi|19 : cgcACTATATTTA------TTAAG---------ATTCATACGCACA--CAGTTCAC-AG---------------------T-C-ATGAGAAA-A--TGGCT---A---ca
gi|2 : aGGACTATATTTA------TCAAG---------ATTCATACGCGCT--TTGTTAAC-AG----A--TGC-A--ATGAAT-T-C-ATGAGGAA-A--TGGCT---A---AT----ATCATTAC-ATTAAACAAT----GAGAATGTAtcgttt
gi|20 : ---------ATTCAAACGCACA--TTGTTTGC-AGAATTC--AGC-A--CTGCAT-T-C-ATGAGGAA-A--Ttgacattgtatttcagcaattaatattttgaatatttc
gi|21 : atttttctgtACTACATTTA------CTCGG---------ATTCATACGCGCA--TTAATCAC-AA----C--T
gi|22 : attaaaataagcgcGGATTATATTTA------TCAAA---------ATTCATACGCGAA--TTGTTCAC-AA----C--TGC-A--CCGCAT-T-C-atat
gi|24 : gacTCATGCGCTCA--TTGTTCAC-AG----C--TGC-T--GGACAT-T-C-ATGAGGAA-A--TGG
gi|3 : ACTATATTTA------TCCAATTGTTCTCTATCCATACGCGTA--TTGTTTAC-AA----A--TAC-A--GCGCG--T-C-ATGAGGAA-A--TACCTGTCA---GT----ATCA-AAG-GCCAAACCATT---GAAAATGTAa
gi|4 : ccgttaaaatagacagcgtACTATATCCA------TCAAC---------ATTCATACAAGCA--TTGCGCAC-AA----T--TGCTAATATGCAT-T-C-ACGAAGAA-A--TGaataca
gi|5 : ttaagatatacgcTATATATA------TTAAA---------ATTCATATGCGCA--TCTTTCAC-AG----A--TGC-A--GTGCAT-C-C-ATGAGAAA-A--TAACT---ACC-AT----ATTAT--C-ATTAAagttgaaaagtaatatcaaagacaagaacgttgcaagaatgtaaatactcatc
gi|6 : tacatgcactaACTATATTTA------TCAAA---------ATTCATGCGCGCAATTTGTATAC-AG----C--TGC-A--CGGAAT-T-C-AAGAAGCGTC--TGTCT---G---TT----ATCATTtaaatacttcaatggggggaaactttggaaatgtaaatc
gi|7 : atgccgcACTACATCTA------TTAAA---------ATTCATACGCG----TTGTTCAC-AA----CTATGT-A--GCATATGTAT-ATGAGGAA-A--Ttgtagggatatcaacgacaaaaacattggaaatgtacatatata
gi|8 : taaaatagacgtACCATATTGA------TCAAA---------AGTCATCAGCGAA--TTGTTCAC-AT----C--TGC-A--TTGCGT-T-C-ATTAGGAA-A--Tttaaattgtgatggtatctatggggagagaacattggaaatgtaaatac
gi|9 : aaacagacgcGAACTACATTTT------TCAAG---------ATTCATGCGCAAA--TTGTTAAC-AA----C--TGC-T--CAGCAT-T-C-ATtgtattaagtaaaaatactgaaggcaaacccattagaaatgtaaacaga
blockSeqs : CTAGTA TTGTTCTCT AT T GAATTC T ATAT G A A G AT TAGAGAT TT . A TCATT
blockSeqs : . CT . . ACTA . GT . . . T . TGTCAGT TT . A TT
blockSeqs : . . . . AG . TT . . . . . TACCAT TT . . T
blockSeqs : . . . . AC . AC . . . . . TAAT A .
blockSeqs : . . . . AC . TT . . . . . TGTT T .
blockSeqs : . . . . GA . AC . . . . . AAT .
blockSeqs : . . . . TT . GG . . . . . T
blockSeqs : . . . . AC . TC . . . . .
blockSeqs : . . . . TT . GG . . . . .
blockSeqs : . . . . GA . TC . . . . .
blockSeqs : . . . . AC . AT . . . . .
blockSeqs : . . . . AC . CT . . . . .
blockSeqs : . . . . GC . CC . . . . .
blockSeqs : . . . . AA . GG . . . . .
blockSeqs : . . . . AT . GC . . . . .
blockSeqs : . . . . GA . GT . . . . .
blockSeqs : . . . . GC . CG . . . . .
blockSeqs : . . . . TC . GC . . . . .
blockSeqs : . . . AC . TT . . .
blockSeqs : . . C . CA . . .
blockSeqs : . . G . . . . .
blockSeqs : . . .
blockSeqCons : TAAT**********
originalCons : GGACTATATTTA------TCAAA---------ATTCATACGCGCA--TTGTTCAC-AG----C--TGC-A--NCGCAT-T-C-ATGAGGAA-A--TGGCT---A---AT----ATCATTAC-GTTAAACAATCA--GAGAATGTA
finalCons : GGACTATATTTA------TCAAA---------ATTCATACGCGCA--TTGTTCAC-AG----C--TGC-A--NCGCAT-T-C-ATGAGGAA-A--TGGCTAAT----------ATCATTAC-GTTAAACAATCA--GAGAATGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): ACAATTTTGTAAGGATATCAAAGGCAAAATTATTGGAAATGTAAATATATG
Alignments
lowQualScore : 111111111 11111111 22222222222222 33333
lowQualScore : 666666 000000000 22 1 11111111 1 7777 1 1 1 4 22 77777777777777 88 6 3 22222
lowQualScore : ...... ......... .. . ........ . .... . . . . .. .............. .. . . .....
lowQualScore : 111111 888888888 44 7 44444444 8 5555 8 8 8 2 99 44444444444444 44 7 2 88888
consensus : GGACTATATTTA------TCAAA---------ATTCATACGCGCA--TTGTTCAC-AG----C--TGC-A--NCGCAT-T-C-ATGAGGAA-A--TGGCT---A---AT----ATCATTAC-GTTAAACAATCA--GAGAATGTA
Reference ( family-210 ) : GGACTATATTTA------TCAAA---------ATTCATACGCGCA--TTGTTCAC-AG----C--TGC-A--NCGCAT-T-C-ATGAGGAA-A--TGGCT---A---AT----ATCATTAC-GTTAAACAATCA--GAGAATGTA
gi|1 : CTATAATCA------TTAAA---------ATTCACA-GTGCA--CTGTTTAC-AG----C--TGC-G--GTGCAT-T-C-GTGATGAA-A--TGGCT---ATACATGTGCATTATTACAATTATACAA-CA--GAGGATG
gi|10 : aatgttTA------TCAAA-----------TTAAATGCGCA--TTTTTCAC-A-----C--TGC-A--GTGCAT-T-T--TGAAG-A-A--TGAC---------T----ACCTTTAC-GTTggcaaattatcatacaatatctttttgcattgatacgtcttgcacaatttc
gi|11 : cagcactatgaTATATTCA------TCAAA---------ATTCATACACGTA--TTTTTCAC-A------------A--TTGAAT-T-C-A-----AA-A--TGGC----A---AT----ATTATggtaaaggtatcgaaattaaaacattggatatgtagat
gi|12 : TTCATACGCACA--TTGTTCAA-AA----G--TAA-A--ACGCAT-T-C-ACGAAGAAGA--TGataattcatagagatatcaaaggcaaaaacattggaa
gi|13 : --TTGTTCAC-AA----C--TTC-C--TTGCAT-T-T-ATGAAGAA-AATTGG-T---AGAGAT----ATCG--AC-GGCAA--AATCATTGAAAATGTAccaaaggcaaaatatttgaaatgtaaatatcacttaatgtt
gi|14 : TATTT-------CCAAG---------ATCCATACGCCCA--TTGTT-ACTAA----C--TGC-A--ACGCAT-T-CAATGAGGAG-A--TGGaattttagaaa
gi|15 : atagatgcac------TCGAACT-------ACTCATGCGCGCA--TTGTTCAC-AG----A--TGC-T--GGGCAT-T-C-ATGAGGAA-A--TGG
gi|16 : ccgttataaatagACTATATTCA------T-GAC---------ACTTATCCACACA--TTGTTCAC-AT----T--GGT-A--TCGCAT-T-C-ATGAGGAA-A--TG
gi|17 : gaggcgcGGACTACATCTACTAGTATCAAG---------ATTCAT----------TGTTTAC-AA----C--TAT-A--GGGCGT-T-C-ATGAGGAA-A--TGG
gi|18 : agacACTATATTTA------TCAAG---------ACTCATGCGCATA--TTGTTCAC-AT----T--TGC-A--TCGCAT-T-C-TTGAGGA
gi|19 : cgcACTATATTTA------TTAAG---------ATTCATACGCACA--CAGTTCAC-AG---------------------T-C-ATGAGAAA-A--TGGCT---A---ca
gi|2 : aGGACTATATTTA------TCAAG---------ATTCATACGCGCT--TTGTTAAC-AG----A--TGC-A--ATGAAT-T-C-ATGAGGAA-A--TGGCT---A---AT----ATCATTAC-ATTAAACAAT----GAGAATGTAtcgttt
gi|20 : ---------ATTCAAACGCACA--TTGTTTGC-AGAATTC--AGC-A--CTGCAT-T-C-ATGAGGAA-A--Ttgacattgtatttcagcaattaatattttgaatatttc
gi|21 : atttttctgtACTACATTTA------CTCGG---------ATTCATACGCGCA--TTAATCAC-AA----C--T
gi|22 : attaaaataagcgcGGATTATATTTA------TCAAA---------ATTCATACGCGAA--TTGTTCAC-AA----C--TGC-A--CCGCAT-T-C-atat
gi|24 : gacTCATGCGCTCA--TTGTTCAC-AG----C--TGC-T--GGACAT-T-C-ATGAGGAA-A--TGG
gi|3 : ACTATATTTA------TCCAATTGTTCTCTATCCATACGCGTA--TTGTTTAC-AA----A--TAC-A--GCGCG--T-C-ATGAGGAA-A--TACCTGTCA---GT----ATCA-AAG-GCCAAACCATT---GAAAATGTAa
gi|4 : ccgttaaaatagacagcgtACTATATCCA------TCAAC---------ATTCATACAAGCA--TTGCGCAC-AA----T--TGCTAATATGCAT-T-C-ACGAAGAA-A--TGaataca
gi|5 : ttaagatatacgcTATATATA------TTAAA---------ATTCATATGCGCA--TCTTTCAC-AG----A--TGC-A--GTGCAT-C-C-ATGAGAAA-A--TAACT---ACC-AT----ATTAT--C-ATTAAagttgaaaagtaatatcaaagacaagaacgttgcaagaatgtaaatactcatc
gi|6 : tacatgcactaACTATATTTA------TCAAA---------ATTCATGCGCGCAATTTGTATAC-AG----C--TGC-A--CGGAAT-T-C-AAGAAGCGTC--TGTCT---G---TT----ATCATTtaaatacttcaatggggggaaactttggaaatgtaaatc
gi|7 : atgccgcACTACATCTA------TTAAA---------ATTCATACGCG----TTGTTCAC-AA----CTATGT-A--GCATATGTAT-ATGAGGAA-A--Ttgtagggatatcaacgacaaaaacattggaaatgtacatatata
gi|8 : taaaatagacgtACCATATTGA------TCAAA---------AGTCATCAGCGAA--TTGTTCAC-AT----C--TGC-A--TTGCGT-T-C-ATTAGGAA-A--Tttaaattgtgatggtatctatggggagagaacattggaaatgtaaatac
gi|9 : aaacagacgcGAACTACATTTT------TCAAG---------ATTCATGCGCAAA--TTGTTAAC-AA----C--TGC-T--CAGCAT-T-C-ATtgtattaagtaaaaatactgaaggcaaacccattagaaatgtaaacaga
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): ACAATTTTGTAAGGATATCAAAGGCAAAATTATTGGAAATGTAAATATATG