lowQualScore : 5 1 1 3333 1 1 1 1 1 1 1 22 222 4444 3 3 1 11 11 1 1 1 3 3
lowQualScore : . . . .... . . . . . . . .. ... .... . . . .. .. . . . . .
lowQualScore : 0 9 7 5555 7 7 7 7 5 5 5 11 777 6666 0 0 3 88 88 4 5 5 2 2
consensus : TTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
Reference ( gi|14 ) : TTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
gi|15 : TTCA-CAAAAA-TT-TT----A-T-ATTCA-ATGT-TATCA-T-TG-TA--AAA---TTTTT----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTTA
gi|7 : TTCA-CAAAAA-TT-TT----A-T-GTTTA-ATGT-TATCA-T-TG-----AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCCA
gi|3 : tcatattttgaaaacTTTA-CAAAAA-TT-T-----A-T-ATTTA-ATGTATATCA-T-TG-TG--AAA----TTTC----A-G-AATA-TATG--CTG--AA-TTC-AC-T-C-AAGATCCA
gi|8 : caaaccttcatatttcaaaaacTTCAACAAAAA-TT-------ACT-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----AGG-AATA-T-TG--CAG--AA-TTC-AC-TCC-AAGATTCAt
gi|4 : tatttagaaacTTCA-CAAAG--TT-TT----A-T-ATTCA-ATGT-TATCA---TG-TG--AAA----TTTC----A-G-AATA----G--CAG--AA-TTC-AC-T-C-AAGATTTA
gi|13 : acaacttttccatattttcaaaatcTTCA-CAAAAA-TTGTT----A-T-ATTTA-A-GT-TA-CA-T-TATTG--AAA---TTTTC----A-GAAATA-TATG--CAG--AA-TTCAAC-T-C-AAGATt
gi|6 : taaaaacTTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTTTCAGA-G-AATA-CTTG--CAG---A-TTC-AC-
gi|12 : ttccatatttagaaacTTCAACAAAAAGTT-TT----A-T-ATTTA-ATGT-TATCA---TG-TG---AA---TTTTC----AGG-AATA-TATG--CAG--AA-TT--AC-TCC-AAGgtcca
gi|2 : catatttagaaacTTCA-CCAAAA-TT-TG----A-G-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTATT----A-T-AGTA-TATG--CAG--AA-TTC-A
gi|1 : caactttcacattttaaaaacTTCA-CAAAAT-TT-TA----A-TGATTTA-ATGT--ATCA-TATG-TG--AAA---TTTTCG---A-GTAATA-TATG--CAG--AAGTTC-AC-T-CAAAGATatgagggtacatg
gi|10 : caactttcaaaatttttaaaaacTTCA-CAAAAA-TT-T-----A-T-ATTAT-GTGT-TATC--T-TG-TA--AA-----TTTC----A-G-AATA-TATG--C-G--AA-TTC-A--T-C-AActa
gi|23 : caactttcaaaatcttaaaaacTTCA-CACAAA-TT-TT----A-T-ACATA-ATGT-TATCA-T-TG-TA--A------------------------ATG--CAT--AA-TTC-AA-T-C-AAGATtc
gi|18 : aaacTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TACG--CAG--AA-TTC-AC-T-C-AAGATT
gi|16 : TCA-CAAAAA-AT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCCAt
gi|17 : TCA-CAAAAA-AA-TT----A-T-ATTTC-ATGT-TATCA-T-TG-TG--AAA---TATTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCC
gi|20 : -CAAAAA-TT-TT----A-T-ATTTA-ATGT-CATCA-T-TG-TG--AAA---CTTTC----G-G-AATA-TATG--CAG---A-TTC-AC-T---ACGATCC
gi|9 : AAAA-TT-TT----A-T-ATTTA-ATAT-TAT---------G--AAA---TTTTC----C-G-AATA-TATG--TGG--AA-TTC-AC-T-C-AAGATTCA
gi|5 : tttatatttaaaaaaaaaatctccAACA-TT-TT----A-T-ATTCA-A-AT-TATCA-T-TA-TA--AAA---TTTTT----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-CCGATTCA
gi|19 : caactttcatgttttaaaatcttcAAAA-TT-TT----A-T-ATTTA-GTGT-TATCA-T-TA--------------TC----A-G-AATG-AATA--CAG--AA-T------T-C-AAGATTCA
gi|11 : aaaaactttattAAAC-TT-TTTTGGG-T-ATTTATGTGT-TATCATT-TG-TGCAAAA---TTTTC----A-T---TA--ATGCCCAGGAAA-TTT-AC-T-CAAAGATCCA
gi|21 : atagcA-TT-TT----G-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-ATTA-TATG--CAG--AA-TTT-AC-T-C-AAGATCCAtg
gi|22 : -TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
gi|24 : -TT----A-T-ATTTA-AGGT-TATCA-T-TG-TG--AAAAACTTTTA----A-G-AATATTTTG--CAG--AA-T
gi|26 : ----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAT---TTTTC----A-C-AATA-TATG--CAG--Agatccatg
gi|28 : CA-T-TG-TG--AAA---TTTTA----A-G-AATA-TATG--CAG--AA-T
gi|27 : -T-TG--G--AAA---TGTTC----A-G-AATA-TATG--CAG--AA--TC-ACGT-C-AAGATTCAgatccatg
gi|29 : TTTG----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCCA
gi|30 : TA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCAt
gi|32 : A-TATG--CAG--AA-TTC-AC-T-C-AAGATTCAt
gi|31 : A-TATG--CAG--AA-TTC-AC-T-C-AAGATTCAtg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|25 ): CAACTTTCATATTTTAAAAACTTAATCCACAAAAAATTTATGTTTAATTTTATCA
Alignments
lowQualScore : 4 1 1 3333 1 1 1 1 1 1 1 22 222 4444 2 2 1 11 11 1 1 1 3 3
lowQualScore : . . . .... . . . . . . . .. ... .... . . . .. .. . . . . .
lowQualScore : 7 8 7 4444 6 6 6 6 5 5 5 00 666 5555 9 9 3 88 88 3 4 5 1 1
consensus : TTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
Reference ( family-2097 ) : TTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
gi|1 : TTCA-CAAAAT-TT-TA----A-TGATTTA-ATGT--ATCA-TATG-TG--AAA---TTTTCG---A-GTAATA-TATG--CAG--AAGTTC-AC-T-CAAAGAT
gi|10 : caactttcaaaatttttaaaaacTTCA-CAAAAA-TT-T-----A-T-ATTAT-GTGT-TATC--T-TG-TA--AA-----TTTC----A-G-AATA-TATG--C-G--AA-TTC-A--T-C-AActa
gi|11 : caactttcaaaatcttaaaaacAAAC-TT-TTTTGGG-T-ATTTATGTGT-TATCATT-TG-TGCAAAA---TTTTC----A-T---TA--ATGCCCAGGAAA-TTT-AC-T-CAAAGATCCAtc
gi|12 : atagcTTCAACAAAAAGTT-TT----A-T-ATTTA-ATGT-TATCA---TG-TG---AA---TTTTC----AGG-AATA-TATG--CAG--AA-TT--AC-TCC-AAGtg
gi|13 : catatttagaaacTTCA-CAAAAA-TTGTT----A-T-ATTTA-A-GT-TA-CA-T-TATTG--AAA---TTTTC----A-GAAATA-TATG--CAG--AA-TTCAAC-T-C-AAGAT
gi|14 : taaaaacTTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
gi|15 : TTCA-CAAAAA-TT-TT----A-T-ATTCA-ATGT-TATCA-T-TG-TA--AAA---TTTTT----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTTA
gi|16 : TCA-CAAAAA-AT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCCA
gi|17 : TCA-CAAAAA-AA-TT----A-T-ATTTC-ATGT-TATCA-T-TG-TG--AAA---TATTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCC
gi|18 : TCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TACG--CAG--AA-TTC-AC-T-C-AAGATT
gi|19 : AAAA-TT-TT----A-T-ATTTA-GTGT-TATCA-T-TA--------------TC----A-G-AATG-AATA--CAG--AA-T------T-C-AAGATTCAt
gi|2 : aaaaactttattTTCA-CCAAAA-TT-TG----A-G-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTATT----A-T-AGTA-TATG--CAG--AA-TTC-A
gi|20 : caactttcacattttaaaaac-CAAAAA-TT-TT----A-T-ATTTA-ATGT-CATCA-T-TG-TG--AAA---CTTTC----G-G-AATA-TATG--CAG---A-TTC-AC-T---ACGATCCatgagggtacatg
gi|21 : A-TT-TT----G-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-ATTA-TATG--CAG--AA-TTT-AC-T-C-AAGATCCA
gi|22 : -TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
gi|23 : TTCA-CACAAA-TT-TT----A-T-ACATA-ATGT-TATCA-T-TG-TA--A------------------------ATG--CAT--AA-TTC-AA-T-C-AAGAT
gi|24 : aaac-TT----A-T-ATTTA-AGGT-TATCA-T-TG-TG--AAAAACTTTTA----A-G-AATATTTTG--CAG--AA-T
gi|26 : ----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAT---TTTTC----A-C-AATA-TATG--CAG--Agatccatg
gi|27 : -T-TG--G--AAA---TGTTC----A-G-AATA-TATG--CAG--AA--TC-ACGT-C-AAGATTCA
gi|28 : CA-T-TG-TG--AAA---TTTTA----A-G-AATA-TATG--CAG--AA-T
gi|29 : TTTG----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCCAgatccatg
gi|3 : TTTA-CAAAAA-TT-T-----A-T-ATTTA-ATGTATATCA-T-TG-TG--AAA----TTTC----A-G-AATA-TATG--CTG--AA-TTC-AC-T-C-AAGATCCAt
gi|30 : caaaccttcatatttcaaaaacTA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCAt
gi|31 : A-TATG--CAG--AA-TTC-AC-T-C-AAGATTCAt
gi|32 : A-TATG--CAG--AA-TTC-AC-T-C-AAGATTCAtg
gi|4 : TTCA-CAAAG--TT-TT----A-T-ATTCA-ATGT-TATCA---TG-TG--AAA----TTTC----A-G-AATA----G--CAG--AA-TTC-AC-T-C-AAGATTTAtg
gi|5 : acaacttttccatattttcaaaatcAACA-TT-TT----A-T-ATTCA-A-AT-TATCA-T-TA-TA--AAA---TTTTT----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-CCGATTCAt
gi|6 : caactttcatgttttaaaatcttcTTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTTTCAGA-G-AATA-CTTG--CAG---A-TTC-AC-
gi|7 : ttccatatttagaaacTTCA-CAAAAA-TT-TT----A-T-GTTTA-ATGT-TATCA-T-TG-----AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCCAgtcca
gi|8 : tcatattttgaaaacTTCAACAAAAA-TT-------ACT-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----AGG-AATA-T-TG--CAG--AA-TTC-AC-TCC-AAGATTCA
gi|9 : tatttagaaacAAAA-TT-TT----A-T-ATTTA-ATAT-TAT---------G--AAA---TTTTC----C-G-AATA-TATG--TGG--AA-TTC-AC-T-C-AAGATTCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): CAACTTTCATATTTTAAAAACTTAATCCACAAAAAATTTATGTTTAATTTTATCA
Alignments
lowQualScore : 4 1 1 3333 1 1 1 1 1 1 1 22 222 4444 2 2 1 11 11 1 1 1 3 3
lowQualScore : . . . .... . . . . . . . .. ... .... . . . .. .. . . . . .
lowQualScore : 7 8 7 4444 6 6 6 6 5 5 5 00 666 5555 9 9 3 88 88 3 4 5 1 1
consensus : TTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
Reference ( family-2097 ) : TTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
gi|1 : TTCA-CAAAAT-TT-TA----A-TGATTTA-ATGT--ATCA-TATG-TG--AAA---TTTTCG---A-GTAATA-TATG--CAG--AAGTTC-AC-T-CAAAGAT
gi|10 : caactttcaaaatttttaaaaacTTCA-CAAAAA-TT-T-----A-T-ATTAT-GTGT-TATC--T-TG-TA--AA-----TTTC----A-G-AATA-TATG--C-G--AA-TTC-A--T-C-AActa
gi|11 : caactttcaaaatcttaaaaacAAAC-TT-TTTTGGG-T-ATTTATGTGT-TATCATT-TG-TGCAAAA---TTTTC----A-T---TA--ATGCCCAGGAAA-TTT-AC-T-CAAAGATCCAtc
gi|12 : atagcTTCAACAAAAAGTT-TT----A-T-ATTTA-ATGT-TATCA---TG-TG---AA---TTTTC----AGG-AATA-TATG--CAG--AA-TT--AC-TCC-AAGtg
gi|13 : catatttagaaacTTCA-CAAAAA-TTGTT----A-T-ATTTA-A-GT-TA-CA-T-TATTG--AAA---TTTTC----A-GAAATA-TATG--CAG--AA-TTCAAC-T-C-AAGAT
gi|14 : taaaaacTTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
gi|15 : TTCA-CAAAAA-TT-TT----A-T-ATTCA-ATGT-TATCA-T-TG-TA--AAA---TTTTT----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTTA
gi|16 : TCA-CAAAAA-AT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCCA
gi|17 : TCA-CAAAAA-AA-TT----A-T-ATTTC-ATGT-TATCA-T-TG-TG--AAA---TATTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCC
gi|18 : TCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TACG--CAG--AA-TTC-AC-T-C-AAGATT
gi|19 : AAAA-TT-TT----A-T-ATTTA-GTGT-TATCA-T-TA--------------TC----A-G-AATG-AATA--CAG--AA-T------T-C-AAGATTCAt
gi|2 : aaaaactttattTTCA-CCAAAA-TT-TG----A-G-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTATT----A-T-AGTA-TATG--CAG--AA-TTC-A
gi|20 : caactttcacattttaaaaac-CAAAAA-TT-TT----A-T-ATTTA-ATGT-CATCA-T-TG-TG--AAA---CTTTC----G-G-AATA-TATG--CAG---A-TTC-AC-T---ACGATCCatgagggtacatg
gi|21 : A-TT-TT----G-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-ATTA-TATG--CAG--AA-TTT-AC-T-C-AAGATCCA
gi|22 : -TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
gi|23 : TTCA-CACAAA-TT-TT----A-T-ACATA-ATGT-TATCA-T-TG-TA--A------------------------ATG--CAT--AA-TTC-AA-T-C-AAGAT
gi|24 : aaac-TT----A-T-ATTTA-AGGT-TATCA-T-TG-TG--AAAAACTTTTA----A-G-AATATTTTG--CAG--AA-T
gi|26 : ----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAT---TTTTC----A-C-AATA-TATG--CAG--Agatccatg
gi|27 : -T-TG--G--AAA---TGTTC----A-G-AATA-TATG--CAG--AA--TC-ACGT-C-AAGATTCA
gi|28 : CA-T-TG-TG--AAA---TTTTA----A-G-AATA-TATG--CAG--AA-T
gi|29 : TTTG----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCCAgatccatg
gi|3 : TTTA-CAAAAA-TT-T-----A-T-ATTTA-ATGTATATCA-T-TG-TG--AAA----TTTC----A-G-AATA-TATG--CTG--AA-TTC-AC-T-C-AAGATCCAt
gi|30 : caaaccttcatatttcaaaaacTA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCAt
gi|31 : A-TATG--CAG--AA-TTC-AC-T-C-AAGATTCAt
gi|32 : A-TATG--CAG--AA-TTC-AC-T-C-AAGATTCAtg
gi|4 : TTCA-CAAAG--TT-TT----A-T-ATTCA-ATGT-TATCA---TG-TG--AAA----TTTC----A-G-AATA----G--CAG--AA-TTC-AC-T-C-AAGATTTAtg
gi|5 : acaacttttccatattttcaaaatcAACA-TT-TT----A-T-ATTCA-A-AT-TATCA-T-TA-TA--AAA---TTTTT----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-CCGATTCAt
gi|6 : caactttcatgttttaaaatcttcTTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTTTCAGA-G-AATA-CTTG--CAG---A-TTC-AC-
gi|7 : ttccatatttagaaacTTCA-CAAAAA-TT-TT----A-T-GTTTA-ATGT-TATCA-T-TG-----AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCCAgtcca
gi|8 : tcatattttgaaaacTTCAACAAAAA-TT-------ACT-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----AGG-AATA-T-TG--CAG--AA-TTC-AC-TCC-AAGATTCA
gi|9 : tatttagaaacAAAA-TT-TT----A-T-ATTTA-ATAT-TAT---------G--AAA---TTTTC----C-G-AATA-TATG--TGG--AA-TTC-AC-T-C-AAGATTCA
blockSeqs : A G G TTGG C . T A T . T CA AAC TCAG G A T CC GA . A G C A
blockSeqs : A . . . . . . . . . . . . . G . . . . . . . C .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : ****
originalCons : TTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
finalCons : TTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): CAACTTTCATATTTTAAAAACTTAATCCACAAAAAATTTATGTTTAATTTTATCA
Alignments
lowQualScore : 4 1 1 3333 1 1 1 1 1 1 1 22 222 4444 2 2 1 11 11 1 1 1 3 3
lowQualScore : . . . .... . . . . . . . .. ... .... . . . .. .. . . . . .
lowQualScore : 7 8 7 4444 6 6 6 6 5 5 5 00 666 5555 9 9 3 88 88 3 4 5 1 1
consensus : TTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
Reference ( family-2097 ) : TTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
gi|1 : TTCA-CAAAAT-TT-TA----A-TGATTTA-ATGT--ATCA-TATG-TG--AAA---TTTTCG---A-GTAATA-TATG--CAG--AAGTTC-AC-T-CAAAGAT
gi|10 : caactttcaaaatttttaaaaacTTCA-CAAAAA-TT-T-----A-T-ATTAT-GTGT-TATC--T-TG-TA--AA-----TTTC----A-G-AATA-TATG--C-G--AA-TTC-A--T-C-AActa
gi|11 : caactttcaaaatcttaaaaacAAAC-TT-TTTTGGG-T-ATTTATGTGT-TATCATT-TG-TGCAAAA---TTTTC----A-T---TA--ATGCCCAGGAAA-TTT-AC-T-CAAAGATCCAtc
gi|12 : atagcTTCAACAAAAAGTT-TT----A-T-ATTTA-ATGT-TATCA---TG-TG---AA---TTTTC----AGG-AATA-TATG--CAG--AA-TT--AC-TCC-AAGtg
gi|13 : catatttagaaacTTCA-CAAAAA-TTGTT----A-T-ATTTA-A-GT-TA-CA-T-TATTG--AAA---TTTTC----A-GAAATA-TATG--CAG--AA-TTCAAC-T-C-AAGAT
gi|14 : taaaaacTTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
gi|15 : TTCA-CAAAAA-TT-TT----A-T-ATTCA-ATGT-TATCA-T-TG-TA--AAA---TTTTT----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTTA
gi|16 : TCA-CAAAAA-AT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCCA
gi|17 : TCA-CAAAAA-AA-TT----A-T-ATTTC-ATGT-TATCA-T-TG-TG--AAA---TATTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCC
gi|18 : TCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TACG--CAG--AA-TTC-AC-T-C-AAGATT
gi|19 : AAAA-TT-TT----A-T-ATTTA-GTGT-TATCA-T-TA--------------TC----A-G-AATG-AATA--CAG--AA-T------T-C-AAGATTCAt
gi|2 : aaaaactttattTTCA-CCAAAA-TT-TG----A-G-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTATT----A-T-AGTA-TATG--CAG--AA-TTC-A
gi|20 : caactttcacattttaaaaac-CAAAAA-TT-TT----A-T-ATTTA-ATGT-CATCA-T-TG-TG--AAA---CTTTC----G-G-AATA-TATG--CAG---A-TTC-AC-T---ACGATCCatgagggtacatg
gi|21 : A-TT-TT----G-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-ATTA-TATG--CAG--AA-TTT-AC-T-C-AAGATCCA
gi|22 : -TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCA
gi|23 : TTCA-CACAAA-TT-TT----A-T-ACATA-ATGT-TATCA-T-TG-TA--A------------------------ATG--CAT--AA-TTC-AA-T-C-AAGAT
gi|24 : aaac-TT----A-T-ATTTA-AGGT-TATCA-T-TG-TG--AAAAACTTTTA----A-G-AATATTTTG--CAG--AA-T
gi|26 : ----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAT---TTTTC----A-C-AATA-TATG--CAG--Agatccatg
gi|27 : -T-TG--G--AAA---TGTTC----A-G-AATA-TATG--CAG--AA--TC-ACGT-C-AAGATTCA
gi|28 : CA-T-TG-TG--AAA---TTTTA----A-G-AATA-TATG--CAG--AA-T
gi|29 : TTTG----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCCAgatccatg
gi|3 : TTTA-CAAAAA-TT-T-----A-T-ATTTA-ATGTATATCA-T-TG-TG--AAA----TTTC----A-G-AATA-TATG--CTG--AA-TTC-AC-T-C-AAGATCCAt
gi|30 : caaaccttcatatttcaaaaacTA-TATG--CAG--AA-TTC-AC-T-C-AAGATTCAt
gi|31 : A-TATG--CAG--AA-TTC-AC-T-C-AAGATTCAt
gi|32 : A-TATG--CAG--AA-TTC-AC-T-C-AAGATTCAtg
gi|4 : TTCA-CAAAG--TT-TT----A-T-ATTCA-ATGT-TATCA---TG-TG--AAA----TTTC----A-G-AATA----G--CAG--AA-TTC-AC-T-C-AAGATTTAtg
gi|5 : acaacttttccatattttcaaaatcAACA-TT-TT----A-T-ATTCA-A-AT-TATCA-T-TA-TA--AAA---TTTTT----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-CCGATTCAt
gi|6 : caactttcatgttttaaaatcttcTTCA-CAAAAA-TT-TT----A-T-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTTTCAGA-G-AATA-CTTG--CAG---A-TTC-AC-
gi|7 : ttccatatttagaaacTTCA-CAAAAA-TT-TT----A-T-GTTTA-ATGT-TATCA-T-TG-----AAA---TTTTC----A-G-AATA-TATG--CAG--AA-TTC-AC-T-C-AAGATCCAgtcca
gi|8 : tcatattttgaaaacTTCAACAAAAA-TT-------ACT-ATTTA-ATGT-TATCA-T-TG-TG--AAA---TTTTC----AGG-AATA-T-TG--CAG--AA-TTC-AC-TCC-AAGATTCA
gi|9 : tatttagaaacAAAA-TT-TT----A-T-ATTTA-ATAT-TAT---------G--AAA---TTTTC----C-G-AATA-TATG--TGG--AA-TTC-AC-T-C-AAGATTCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): CAACTTTCATATTTTAAAAACTTAATCCACAAAAAATTTATGTTTAATTTTATCA