lowQualScore : 2 22222222222 1111 222 11 666666666 1 222222 77777 1111 2222222 11 222222 1 11111 1 22
lowQualScore : 0 88888888888 7777 8 777 0 22 555555555 6 5 5 5 777777 11111 77 77 0000 66 8888888 0 4 777 77 1 66 00 5 222222 66 2 33 0 3 333 2 3 66 33 6 2 2 555 1 777 1 666 33 88888888888 444 2 2 2 22 666 55 2 55555 22 6666 333 22 2 4444 2 3 1 4 44 4444 22 33 9999 2 2 2 11
lowQualScore : . ........... .... . ... . .. ......... . . . . ...... ..... .. .. .... .. ....... . . ... .. . .. .. . ...... .. . .. . . ... . . .. .. . . . ... . ... . ... .. ........... ... . . . .. ... .. . ..... .. .... ... .. . .... . . . . .. .... .. .. .... . . . ..
lowQualScore : 0 00000000000 0000 0 555 2 55 000000000 7 0 7 7 777777 44444 99 00 6666 99 3333333 8 4 888 44 1 11 66 0 888888 11 9 88 5 1 666 9 3 88 99 1 9 9 222 1 333 8 999 44 22222222222 111 4 4 1 99 333 00 1 66666 44 6666 777 99 0 2222 0 0 9 0 88 2222 88 11 9999 2 2 2 99
consensus : AGCATTTTA-CCCCTC-----TCGGGGGCCT----CTAGCTAT-CA---TCT-GTAATT-TTC-----TAGGTGA-CGCATGCGCAA-A-AGNCA---TTGT---TTTA--TCATGGAT-GC----GAA--TTTNAACGGCGGAAAAGAT-G---TATGGGTTG--AAATGA--CG-ACGA-NTN-ATA--GCTGATTTNGT-TTAGAATTGAAT-GGTTT-T-AGTTGG-ATTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--GT---TTTC-TA-GCGATT-CGCA--T-C-GCA--T-ATAACCTGA--A--A-TA----A---AAT--CG-A----AT-CGAAG-TGC-GTC--TG----AT--TTCCCACATACTTTATG--AAGA-NC-T-G-GAC-AGAAACGAGGGGG
Reference ( gi|4 ) : AGCATTTTA-CCCCTC-----TTGGGAGCCT----CTAGCTAT-CA---TCT-GTAATT---------TAGATGA-CGCATGCGGAA-A-AGACT---TTGTAACTTTA--TCATGGAT-GC----GAA--TTTTAACTGAGGAAAAGAT-G---TATGGGTTG--AAATGA--CG-ACG--TTA-ATA--GCTGATTTTGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTAAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTTC-TA-GCGATT-CGCA--T-T-GCA--T-ATAACCTGA--T--A-TA----A---AAT--CG-A----AT-CTAAG-TGC-GTC--TG----AT--TTCCCACATACTTTATG--AAGA-GC-T-G-GAC-AGAAAACAGGGGG
gi|1 : AGCATTTTAACCCCTT-----TAGGGGGCCT----CTAGCTATGCAA--TCTTGTAATT---------TAGGTGATCGCATGCGCAA-AGAGACA---TTGT----TTAATTCATGGAT-GCCGAAGAG--TTTAAGCGGAGGAAAAGAT-G---TATGGGTTG--AAATGA--CGTACGACTTA-TTA--GCTGATTTTGT-ATAGAATTGGGTAGGTTT-T-AGTTGGAATTTACTTT--TCAAG-ATGA-ATACATTACT---AG-CTGAAGTTTTAG--G----TG-C--AT---TTTCATATGCGATTCCGCA--T-C-GCATTT-ATAACCTGA--T--ATTAT---A---AAT--CG-A----AT-CGAAG-TGG-GTC---G----AT--CTCCCTCA
gi|5 : ttgtcattaatttcattaccgaagatatatgattaatatcaatgatttgtagctttacatatttctaattttatttgtaatctttgaaatctgcactcaagatttcaagtttgttaatttccattgattggctcctactcagtaattcctaatttgtcgtaattatgttgcatcaccgaaaatatcaacgcgtgtgagaacaatgtttcgattttccaagcgatttacctgcaagttaGCATTTTATCCCCTC-----CC-----CCTGCACCCAG-TAT-CACTCTCT--TGATTATTTT----TAGGTG--CGCATGCGCAAGA-AGACA---TTGT----TTA--TCATGGAT-GC----GAAAGTTTTA-CGGAGGAAA-GAT-G---CA--GGTTG--AAATGAAACG-ATA--TTATATA--GAT--TTTTGT-TTAGAAT--GAT-GGTTT-T-AGTTGG-ATTA-C--T--TCAAG-ATGA-TGA-ATTACT---GGACTGA---TTTAGAAG----GATC--AT---TTTC-TA-G-GA-T-CGCA--T-C-GCA--T-ATAACCTG------------------------------------AAA-TGCGGTC--AT----AT--CTCCCACACAAATAATG--AAGA-CG-T-G-GAC-AG-AAACAAGGGGgtaatgatatacgtggatcagaatcgagggg
gi|9 : TTTA-CCCCTCGGGGGTCGGGGGGCT----CTAGCGAT-CA---TGT-GTAATCTTTCAAAAATAGATTA-TGCATGCGCAA-A-AGTCA---TTGT
gi|2 : ttcctgtatttcataactttaatattcagagaattacgtgcattcactgaaatacaatgcgtttgacaaaaaaaaaaaaaacatgttccatttctaagcgatatactacaagtaagacaA-CTCCTC-----TTGGGGGCCT----CTAGCTAT-Cttttca
gi|21 : caatgaaaataaacaataatataatgcttttgaaaattagacataaaaaataatcatatactttacaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaagatagttgtgcttaatttcattgtaattaatttcatgaatttccgtactttaaatctaattttattttttatttagtgttattttcttttaatgcattgattccctatttgttaatttcagctgtttcctgtaatttataattttcgtaattacatgtatgtgcattcaccgaaatgcaatacatgtgacaagattgttcgatttccaagcgatttacatgcaagtaaaCT----CTTGCTAA-CA---TTT-GTAATT---------TAGATGA-CGCATGCGCAA-A-AGTCA---TTG----TTTA--TCATGGAT-GC----GAA--TTT--------GAAAAGAT-G---TTTGGGTTG--AAATAA--
gi|6 : TGA-CGCCTGCGCAA-G--GAGTCGATTGT----TTA--TCATGTATTGC----GAA--CTCGAAC-GTAGAAAAGATTG---TATGG-TTGGAAAATGAA-CG-ACGA-TTA-TTA--GCTGATTTTCTCTTAGAACTGAAT-GGTTTCT-AGTTGG-ATTTAC--TCTTCAA--ATGATATA-AGTAATA--GGACTGAC--TTTAG--G----TA-T---T---TTTC-TA--C-ATT-CGCA--T-C-GCA--T-ATACCCTGA--A--A-TAAAATA---AAT--CG-A----AG-GTAGG-TGC-G----TG----ATGAGTCCCACAAA----ATC--AAGATACTT-GTGAC-AGAAAgaaatgaatcttatatttt
gi|27 : agTGA-CGCATGCACAA-A-AG-CTA--TTG----TTTA--TAAT-GAG-GC----GAG--TTTC-ACAGCGGAAAAGAcgaga
gi|7 : ATGC--AA-A-AGCCA---TTGT----TGA--TCATGAAG-GC----GAA--TTTTAACAGCGGAAAAGGT-G---TA-GGGTTG--AAATGA--CG-ACG--ATT-ATA--GCTGATTTTGT-TTAGAATTGAAT-GGTTT-T-AGTTGG-ATTTAC--A--TCAAG-TTGA-ATA-ATTTCT---GTACTGA---TTTTG--G----TA-C--AT---TTTC-TA-GCAAAT-CGCA--T-C-GCA--T-ATAACCTGA--A--A-TA----A---AAT--CG-A----AT-CGAAG-TGC-GTC--TG----AT--TCCCCACATACTTTATG--AAGG-CC-T-G-GAC-AGAAAGGAGGGG
gi|8 : atgcgTTTA--TGATGGAG-CC----GAG--TTT-GACAGCGGAAAAGCT-G---CATGGTTTG--AAATAG--CG-ATG--ATT-ATA--GTCGATTTAGT-ATAAAAATGAAT-AGTTT-C-AATTGG-ATTTAG--T--TGCAG-AGAA-ATC-ACTCCT---GGGTTAA---TTCAG--G----CA-A--GT---TTAG-AA-ACGATT-CACA--T-T-AAA--T-GTAACCTGA--GAAA-TA----A---AAT--CG-A----AT-CGAAA-CGC-AAC--TA----AT--TTCTCGCATACTTTATG--AGGG-CT-T-G-GAC-AGAAATGAGGGG
gi|11 : aagctattg----GAA--ATTCAACAGCGGAAAGG-T-G---TA-AGGTTG--AAACGA--CG-ACG--ATT-ATA--GCTAATTTGGT-TTAGAATCTAAT-GGTTT-T-AGATGG-ATTTAT--T--TAAAG-ATGA-A-A-TTTTCT---GAACTGA---TTTAG--G----TA-C--AT---TTTC-TT-GCGATT-CGCA--G-C-GCA--T-ATAACCTGA--A--A-TA----A---AAT--TG-A----AA-AGAAG-TGC-GTC--TG----GT--TT-TCACAac
gi|10 : TTTGACAGCGGAAAGGAT-GCAATAT---TTG--AAAATA--CG-ATGA-TCA-ATATGGTCGATTTAAT-TTACA---------GTTT-C-AGGTGG-ATTTAC--T--T---G-CTAA-AT----TA-----GG----------TAA--G----T------T---TTTC-GA-GCGATT-CACA--T-C-AAG--T-GTAACCTGA--A--A-TA----A---AAT--AG-A----AC-CGAAG-CGC-GAC--CG----AT--TTCCCACATACTTTATG--AA-A-GCTT-G-GAC-AAAA
gi|15 : aT-G---TATGGGTTG--CAATGA--CG-ACG--ATT-ATA--GCCGATTTTGT-TTAGATTTGGAT-GGTTT-T-AGTTGG-CTTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTTC-TA-GCGATT-CGCA--T-C-GCA--T-ATAACCTGA--A--A-TA----A---AAT--CG-A----AT-CGAAG-TGctgag
gi|12 : TA--GCTGATTTTTG-TTAGAATTGGGT-GGTTT-T-AGTTGG-ATTTACA-T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTAC-AA-GCGATT-CGCA--T-C-GCA--TAATAACCTAAAGT--A--A----A---AAT--CG-A----AT-CGAAG-TGG-GTC--GG----A---TTCCCAC--AGTTTA-GATAAGA-GG-TGG-GAC-AGAAACGAGGGG
gi|16 : TGATTTAGT-GAGAAATTGATT-GGTGT-C-ATTTGG-ATTTAC--T--T---------------TTA-T---GGATTGA---TTTAG--G----TA-A--GT---TTTT-GA-ACAATT-CATA--T-C-AAA--T-GTAA-CTG---------A----A---GGG--CA-A-------CT-GG-TGC---C--AGCAACAT--TTCCCACATACTTTGT
gi|14 : tatTGATTTAGT-GTGGAATTAAAT-G---------------TCAAT--T--T-AAT-ATAA-A-A-ATCTCTCATGCATTGA---TTTAG--G-----G-C--AA---GTCA-TA-TAAATT--GCAATC-T-GAA--T--TAACATTA--T--A-CC----A---AAG--C--A----CTACTGA--TACTGTCA-TT----AT--TTCTCACACACTTTATA--AAGA-CT-T-G-GAC-AAAAACTTGGGGGactggctttgaaagaaatgag
gi|13 : GATTTCAT-ACGAAATGGAAT-GGTTT-C-AGCTGG-ATTTAC--T--TGCGG-AGAA-ATC-ATTCCT---GGATTAA---TTTAA--G----CA-A--GT---TAAA-GA-ACAATT-CACA--T-C-AAA--T-GTAACCTTA--A--A-TA----A---AAT--CG-G----TT-TGAAG-CGA-GAC--TG----AT--TTTCCATACACCTTATG--AAGG-CT-T-G-GAC-AGAAACGAAGGG
gi|20 : atcT-TAAGAATTGGAT-GTTTT-TTAGTTGG-ATTTAC--T--TCAAGCATGA-ATA-ATTACT---GG-CTGA-------------------------------TA-GCGATT-TGCA--T-C-GCA--T-ATAACCTGA--A--A-TA----A---AAT--CGAA----AT-CGAAGTTGC-GTC--TG----a
gi|22 : -ATTTAC--T--GCAAG-ATGA-AAG-ATTACT---GGACTGA---TTTAG--T----TA-C--AT---TATC-TA-G-GATT-CGCA--T-C-GCA--T-ATAAACTGA--A--A-T---------AAT--CA-A----AT-CGAAG-TGC-GTC--TG----AT--TTCCCACATA
gi|19 : TA-ATTTCT---GGACTGA---TTTAG--G----TA-TTTAT---TTTC-TA-GCGATT-TGCA--T-T-GCA--T-ATAACCTGA--A--A-TA----A---AAT--CG-A----GT-CAAAG-TGC-ATT--TG----AT--TTTCCACATACTTTATG--AAGG-CC-T-G-GAC-AG-AAACGGGGG
gi|18 : TGA---TTTAG--GACCGTA-C--GTAAGTTTT-TG-AAGATT-CACA--T-C-ATA--T-GTAACCTGA--A--A-CA----A---AATACCG-GTAGTAT-CGAAG-CAC-GAT--TG----AT--TTCCCACATAGTTTAGG--AAGG-CT-T-G-GAT-GGAAACGAGGGGG
gi|23 : t---TTTC-TA-GCGATT-CGCA--T-C-GCA--T-ATAACTTGA--A--A-TA----A---AAT--TG-A----AT-CAAAG-TGG-GTC--TG----AT--TTCCCACATACATTATG--AAGA-AC-T-G-GAC-AGAAACGAGGGGG
gi|25 : ATT-CGCA--T-TCGCA--A-ATAACCTGA--T--A-------A---AAT--CG-A----AT-CAAAG-TGG-GTC--TG----A---TTCCCATATAC-TTATG--AAGA-GC-T-G-GAC-CGAAACGAAGGGG
gi|24 : T-CGCA--TCT-GAAA-T-ATAA----A--T--A-TA----ATAAAAT--CG-A----AT-CGAAG-TGC-ATC--TG----AT--TTCCAACATACTTTATG--AAG--GCGT-G-GAC-AGAAACGAGGGGGc
gi|26 : gcaG-A----AT-C-GAG-TGG-GTCACTG----AT--TTCC-ACATACTTTATG--AAGA-GC-T-G-GACGAGAAA
gi|28 : AG-TGC-GTC--TG----AT--TTCCCACATACTTCATA--AAGA-GC-T-G-GAC-AGAAACGAGGCGGcgag
gi|31 : T--TTCCCACATACTTTATG--AAGA-CT-T-G-GAC-AGAAA
gi|30 : CCCACATACTTTATG--AAGA-GC-T-G-GAC-AGAAACGAGGGGGcgat
gi|32 : ACATATTTTATG--AAGA-GT-T-A-GAC-AGAAACGAGGGGG
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TAATGCAAAATAAACAATAATAGATAATATACTTTTGAGAATTAGACATACAAAATAATCATATATTTTACAAATAAGAAACAGATATGTATTTAATGTGCTTAATATCGTTATATAATTAATATCATGAATTTCGCGCTGAAATCTACATTTATTTTATTTAAATGTATTTCTTTAATACATCGATTCCCAATTTGTTAATTTCAGTTGCTTCCCGTAATTCCTAATTGTTCGTTATATATGTGCATTCACCGATATACTTACAGAACATGTCGTGAGAACAATGCTTGATTTCCAAGCGATTTACCGCAGTAAA
Unaligned ( gi|17 ): CGGTACCTAATTATTTTCTGTACTTTATTTCCATTGTTATTTTCTTTCAATGCATCAATTCCCAATTTATTGATTTTAGTTGCTTCCTGTAATTCATAATTTGTGCATTCAGAGAACATTATGTGCATTCATCGAAATACAATGCGTGTG
Unaligned ( gi|29 ): GAAGTGGGTCGGATTCCCACAGGTTTAGATACATGTAAGAGGTG
Alignments
lowQualScore : 1 22222 1111 222 55555555555 1 1 11111
lowQualScore : 6 00000 1 4444 6 222 8 8 66666666666 5 888 4 8 1 4 9999 5 4 5 9999 66 999 3 1 4 777 5 55 4 4 55 8 4 55 3 44 2 2 2 2 2 66 33 2 2 2 333 2 666 666 33 5555 00000 333 2 2 2 2 2 22 2 22 44 4444 2 2 22 444444 44444 1 8888888888 44 4444 22 1 22 1 22 22 1 1 1 1
lowQualScore : . ..... . .... . ... . . ........... . ... . . . . .... . . . .... .. ... . . . ... . .. . . .. . . .. . .. . . . . . .. .. . . . ... . ... ... .. .... ..... ... . . . . . .. . .. .. .... . . .. ...... ..... . .......... .. .... .. . .. . .. .. . . . .
lowQualScore : 0 00000 4 2222 7 000 0 0 00000000000 7 888 4 9 0 4 7777 7 4 0 4444 11 444 0 6 0 000 7 55 0 4 44 3 0 55 1 11 9 9 9 9 7 33 77 7 7 7 777 0 999 555 22 0000 66666 999 2 2 2 1 0 88 0 88 88 2222 0 0 88 333333 55555 8 3333333333 55 0000 66 7 66 9 66 66 9 9 9 9
consensus : AGCATTTTA-CCCCTC-----TCGGGGGCCT----CTAGCTAT-CA---TCT-GTAAT-T--TT------TAGGTGA-CGCATGCG---CAA-A-AGNC-ATTGT---TTTAT-CATGGAT-GC----GAA--TTTNAACGGCGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGAT-T-A-TA--GCT-GATTTN-GT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--GT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCTGA--A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--ACCT-G-GA-C-AGAAACGAGGGGG
Reference ( family-2081 ) : AGCATTTTA-CCCCTC-----TCGGGGGCCT----CTAGCTAT-CA---TCT-GTAAT-T--TTC-----TAGGTGA-CGCATGCG---CAA-A-AGNC-ATTGT---TTTAT-CATGGAT-GC----GAA--TTTNAACGGCGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGAN-TNA-TA--GCT-GATTTN-GT-TTAGAATTGAAT-GGTTT-T-AGTTGG-ATTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--GT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCTGA--A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--ANCT-G-GA-C-AGAAACGAGGGGG
gi|1 : AGCATTTTAACCCCTT-----TAGGGGGCCT----CTAGCTATGCAA--TCTTGTAAT-T--T--------AGGTGATCGCATGCG---CAA-AGAGAC-ATTGT---TTAATTCATGGAT-GCCGAAGAG--TTTAAGCGGAGGAAAAGAT-G---TATGGGTTG--AAATGA-CGTACGAC-TTATTA--GCT-GATTTT-GT-ATAGAATTGGGTAGGTTT-T-AGTTGGAATTTACTTT--TCAAG-ATGA-ATACATTACT---AG-CTGAAGTTTTAG--G----TG-C--AT---TTT-CATATGCGATTCCGCAT-CGCATTT-AT--AACCTGAT-A----TT-ATAAAT--CG-A----ATCGAA-----G-TGG----------GTC---G----AT--CTCCCTCAGTA----ATG--ATAT--ACGT-G-GATC-AGAATCGAGGGG
gi|10 : ttgtcattaatttcattaccgaagatatatgattaatatcaatgatttgtagctttacatatttctaattttatttgtaatctttgaaatctgcactcaagatttcaagtttgttaatttccattgattggctcctactcagtaattcctaatttgtcgtaattatgttgcatcaccgaaaatatcaacgcgtgtgagaacaatgtttcgattttccaagcgatttacctgcaagttaTTTGACAGCGGAAAGGAT-GCAATAT---TTG--AAAATA-CG-ATGAT-CAA-TATGGTC-GATTTA-AT-TTACA---------GTTT-C-AGGTGG-ATTTAC--T--T-------------------------GCTAA---ATTAG--G----TA-A--GT---TTTTC-GA-GCGATT-CACAT-CAAG--T-GT--AACCTGA--A----AT-A-AAAT--AG-A----ACCGAA-----G-CGC----------GAC--CG----AT--TTCCCACA-TACTTTATG--A-AA--GCTT-G-GA-C-AAAACTGAG
gi|11 : a----GAA--ATTCAACAGCGGAAAGG-T-G---TA-AGGTTG--AAACGA-CG-ACGAT-T-A-TA--GCT-AATTTG-GT-TTAGAATCTAAT-GGTTT-T-AGATGG-ATTTAT--T--TAAAG-ATGA-A-A-TTTTCT---GAACTGA---TTTAG--G----TA-C--AT---TTT-C-TT-GCGATT-CGCAG-CGCA--T-AT--AACCTGA--A----AT-A-AAAT--TG-A----AAAGAA-----G-TGC----------GTC--TG----GT--TT-TCACA-
gi|12 : -TA--GCT-GATTTT-TG-TTAGAATTGGGT-GGTTT-T-AGTTGG-ATTTACA-T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTA-C-AA-GCGATT-CGCAT-CGCA--TAAT--AACCTAA--A----GTAA-AAAT--CG-A----ATCGAA-----G-TGG----------GTC--GG----A---TTCCCAC---AGTTTA-GATA-AG--AGGTGG-GA-C-AGAAACGAGGGG
gi|13 : -GATTTC-AT-ACGAAATGGAAT-GGTTT-C-AGCTGG-ATTTAC--T--TGCGG-AGAA-ATC-ATTCCT---GGATTAA---TTTAA--G----CA-A--GT---TAA-A-GA-ACAATT-CACAT-CAAA--T-GT--AACCTTA--A----AT-A-AAAT--CG-G----TTTGAA-----G-CGA----------GAC--TG----AT--TTTCCATA-CACCTTATG--A-AG--GCTT-G-GA-C-AGAAACGAAGGG
gi|14 : atcT-GATTTA-GT-GTGGAATTAAAT-G----------------TCAA--T--TTAAT-ATAA-A-A-ATCTCTCATGCATTGA---TTTAG--G------------------------GCAAGT-CATAT-AAAT--T-GC--AATCTGA--A----TT-A-ACAT--TA-T----ACCAAA-----G-CACTACTGATACTGTCA-TT----AT--TTCTCACA-CACTTTATA--A-AG--ACTT-G-GA-C-AAAAACTTGGGGGa
gi|15 : T-G---TATGGGTTG--CAATGA-CG-ACGAT-T-A-TA--GCC-GATTTT-GT-TTAGATTTGGAT-GGTTT-T-AGTTGG-CTTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCTGA--A----AT-A-AAAT--CG-A----ATCGAA-----G-TG
gi|16 : T-GATTTA-GT-GAGAAATTGATT-GGTGT-C-ATTTGG-ATTTAC--T--T---------------TTA-T---GGATTGA---TTTAG--G----TA-A--GT---TTT-T-GA-ACAATT-CATAT-CAAA--T-GT--AA-CTGA--A----GG-G-CAAC--TG-----------------G-TGC------------C--AGCAACAT--TTCCCACA-TACTTTGTA--C-TG--GCTT-T-GA-A-AGAAATGAG
gi|18 : tatTGA---TTTAG--GACCGTA-C--GTAAGTTT-T-TG-AAGATT-CACAT-CATA--T-GT--AACCTGA--A----AC-A-AAATACCG-GTAGTATCGAA-----G-CAC----------GAT--TG----AT--TTCCCACA-TAGTTTAGG--A-AG--GCTT-G-GA-T-GGAAACGAGGGGG
gi|19 : tTA-ATTTCT---GGACTGA---TTTAG--G----TA-TTTAT---TTT-C-TA-GCGATT-TGCAT-TGCA--T-AT--AACCTGA--A----AT-A-AAAT--CG-A----GTCAAA-----G-TGC----------ATT--TG----AT--TTTCCACA-TACTTTATG--A-AG--GCCT-G-GA-C-AGAAACGGGGG
gi|2 : A-CTCCTC-----TTGGGGGCCT----CTAGCTAT-C
gi|20 : caatgaaaataaacaataatataatgcttttgaaaattagacataaaaaataatcatatactttacaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaagatagttgtgcttaatttcattgtaattaatttcatgaatttccgtactttaaatctaattttattttttatttagtgttattttcttttaatgcattgattccctatttgttaatttcagctgtttcctgtaatttataattttcgtaattacatgtatgtgcattcaccgaaatgcaatacatgtgacaagattgttcgatttccaagcgatttacatgcaagtaaaT-TAAGAATTGGAT-GTTTT-TTAGTTGG-ATTTAC--T--TCAAGCATGA-ATA-ATTACT---GG-CTGA--------------------------------TA-GCGATT-TGCAT-CGCA--T-AT--AACCTGA--A----AT-A-AAAT--CGAA----ATCGAA-----GTTGC----------GTC--TG----
gi|21 : CT----CTTGCTAA-CA---TTT-GTAAT-T--T--------AGATGA-CGCATGCG---CAA-A-AGTC-ATTG----TTTAT-CATGGAT-GC----GAA--TTT--------GAAAAGAT-G---TTTGGGTTG--AAATAA-
gi|22 : -ATTTAC--T--GCAAG-ATGA-AAG-ATTACT---GGACTGA---TTTAG--T----TA-C--AT---TAT-C-TA-G-GATT-CGCAT-CGCA--T-AT--AAACTGA--A----AT----AAT--CA-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TAgaaatgaatcttatatttt
gi|23 : ---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACTTGA--A----AT-A-AAAT--TG-A----ATCAAA-----G-TGG----------GTC--TG----AT--TTCCCACA-TACATTATG--A-AG--AACT-G-GA-C-AGAAACGAGGGGG
gi|24 : GCAT-CGCA--T-CTGAAATATAA--ATATAAT-A-AAAT--CG-A----ATCGAA-----G-TGC----------ATC--TG----AT--TTCCAACA-TACTTTATG--A-AG--GCGT-G-GA-C-AGAAACGAGGGGG
gi|25 : ATT-CGCATTCGCA--A-AT--AACCTGA--------T-A-AAAT--CG-A----ATCAAA-----G-TGG----------GTC--TG----AT--T-CCCATA-TACTT-ATG--A-AG--AGCT-G-GA-C-CGAAACGAAGGGG
gi|26 : G-A----ATCGA------G-TGG----------GTCACTG----AT--TTCC-ACA-TACTTTATG--A-AG--AGCT-G-GA-CGAGAAACGAGc
gi|27 : TGA-CGCATGCA---CAA-A-AGCT-ATTG----TTTAT-AAT-GAG-GC----GAG--TTTC-ACAGCGGAAAAGA
gi|28 : A-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTCATA--A-AG--AGCT-G-GA-C-AGAAACGAGGCGG
gi|30 : CCCACA-TACTTTATG--A-AG--AGCT-G-GA-C-AGAAACGAGGGGG
gi|31 : T--TTCCCACA-TACTTTATG--A-AG--ACTT-G-GA-C-AGAAACGA
gi|32 : ACA-TATTTTATG--A-AG--AGTT-A-GA-C-AGAAACGAGGGGGt
gi|4 : AGCATTTTA-CCCCTC-----TTGGGAGCCT----CTAGCTAT-CA---TCT-GTAAT-T--T--------AGATGA-CGCATGCG---GAA-A-AGAC-TTTGTAACTTTAT-CATGGAT-GC----GAA--TTTTAACTGAGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACG-T-TAA-TA--GCT-GATTTT-GT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTAAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTT-C-TA-GCGATT-CGCAT-TGCA--T-AT--AACCTGA--T----AT-A-AAAT--CG-A----ATCTAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--AGCT-G-GA-C-AGAAAACAGGGGG
gi|5 : GCATTTTATCCCCTC-----CC-----CCTGCACCCAG-TAT-CACTCTCT--TGAT-TATTTT-----TAGGTG--CGCATGCG---CAAGA-AGAC-ATTGT---TT-AT-CATGGAT-GC----GAAAGTTTTA-CGGAGGAAA-GAT-G---CA--GGTTG--AAATGA--A-ACGATATTA-TA----TAGATTTTTGT-TTAGAAT--GAT-GGTTT-T-AGTTGG-ATT-AC--T--TCAAG-ATGA-TGA-ATTACT---GGACTGA---TTTAGAAG----GATC--AT---TTT-C-TA-G-GA-T-CGCAT-CGCA--T-AT--AACCTGA--A----AT-G-------CG--------------------------------GTC--AT----AT--CTCCCACA-CAAATAATG--A-AG--ACGT-G-GA-C-AGAAACAAGGGG
gi|6 : GTGA-CGCCTGCG---CAA-GGAGTCGATTGT---TT-AT-CATGTATTGC----GAA--CTCGAACG-TAGAAAAGATTG---TATGG-TTGGAAAATGAACG-ACGAT-TAT-TA--GCT-GATTTT-CTCTTAGAACTGAAT-GGTTTCT-AGTTGG-ATTTAC--TCTTCAA--ATGATATA-AGTAATA--GGACTGAC--TTTAG--G----TA-T---T---TTT-C-TA--C-ATT-CGCAT-CGCA--T-AT--ACCCTGA--A----AT-A-AAAT---A-A----ATCGAAGGTAGG-TGC----------G----TG----ATGAGTCCCACA-AA----ATC--A-AGATACTT-GTGA-C-AGAAACGAG
gi|7 : aATGCGATGCAA-A-AGCC-ATTGT---TG-AT-CATGAAG-GC----GAA--TTTTAACAGCGGAAAAGGT-G---TA-GGGTTG--AAATGA-CG-ACGAT-T-A-TA--GCT-GATTTT-GT-TTAGAATTGAAT-GGTTT-T-AGTTGG-ATTTAC--A--TCAAG-TTGA-ATA-ATTTCT---GTACTGA---TTTTG--G----TA-C--AT---TTT-C-TA-GCAAAT-CGCAT-CGCA--T-AT--AACCTGA--A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TCCCCACA-TACTTTATG--A-AG--GCCT-G-GA-C-AGAAAGGAGGGGa
gi|8 : -A-AGCT-ATTGT---TT-AT-GATGGAG-CC----GAG--TTTGA-CAGCGGAAAAGCT-G---CATGGTTTG--AAATAG-CG-ATGAT-T-A-TA--GTC-GATTTA-GT-ATAAAAATGAAT-AGTTT-C-AATTGG-ATTTAG--T--TGCAG-AGAA-ATC-ACTCCT---GGGTTAA---TTCAG--G----CA-A--GT---TTA-G-AA-ACGATT-CACAT-TAAA--T-GT--AACCTGAGAA----AT-A-AAAT--CG-A----ATCGAA-----A-CGC----------AAC--TA----AT--TTCTCGCA-TACTTTATG--A-GG--GCTT-G-GA-C-AGAAATGAGGGG
gi|9 : TTTA-CCCCTCGGGGGTCGGGGGGCT----CTAGCGAT-CA---TGT-GTAATCT--TTCAAAAATAGATTA-TGCATGCG---CAA-A-AGTC-ATTGT---TTT-T-CAac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAATGCAAAATAAACAATAATAGATAATATACTTTTGAGAATTAGACATACAAAATAATCATATATTTTACAAATAAGAAACAGATATGTATTTAATGTGCTTAATATCGTTATATAATTAATATCATGAATTTCGCGCTGAAATCTACATTTATTTTATTTAAATGTATTTCTTTAATACATCGATTCCCAATTTGTTAATTTCAGTTGCTTCCCGTAATTCCTAATTGTTCGTTATATATGTGCATTCACCGATATACTTACAGAACATGTCGTGAGAACAATGCTTGATTTCCAAGCGATTTACCGCAGTAAA
Unaligned ( gi|17 ): CGGTACCTAATTATTTTCTGTACTTTATTTCCATTGTTATTTTCTTTCAATGCATCAATTCCCAATTTATTGATTTTAGTTGCTTCCTGTAATTCATAATTTGTGCATTCAGAGAACATTATGTGCATTCATCGAAATACAATGCGTGTG
Unaligned ( gi|29 ): GAAGTGGGTCGGATTCCCACAGGTTTAGATACATGTAAGAGGTG
Alignments
lowQualScore : 1 22222 1111 222 11 555555555 1 1111 11111
lowQualScore : 6 00000 1 4444 6 222 99 111111111 5 888 4 8 1 4 9999 5 4 5 9999 66 999 3 1 4 777 5 55 4 4 4 7777 4 4 1 2 2 2 2 2 66 33 2 2 2 333 2 666 666 33 5555 00000 333 2 2 2 2 2 22 2 22 22 2 4444 2 2 22 444444 44444 1 8888888888 44 4444 22 1 22 1 22 1 1 1 1 1
lowQualScore : . ..... . .... . ... .. ......... . ... . . . . .... . . . .... .. ... . . . ... . .. . . . .... . . . . . . . . .. .. . . . ... . ... ... .. .... ..... ... . . . . . .. . .. .. . .... . . .. ...... ..... . .......... .. .... .. . .. . .. . . . . .
lowQualScore : 0 00000 4 2222 7 000 00 888888888 7 888 4 9 0 4 7777 7 4 0 4444 11 444 0 6 0 000 7 55 0 4 4 2222 0 0 0 9 9 9 9 7 33 77 7 7 7 777 0 999 555 22 0000 66666 999 2 2 2 1 0 88 0 88 88 0 2222 0 0 88 333333 55555 8 3333333333 55 0000 66 7 66 9 66 6 9 9 9 9
consensus : AGCATTTTA-CCCCTC-----TCGGGGGCCT----CTAGCTAT-CA---TCTT-GTAATTTTT-------AGGTGA-CGCATGCG---CAA-A-AGNC-ATTGT---TTTAT-CATGGAT-GC----GAA--TTTNAACGGCGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTNGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--GT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--ACCT-G-GA-C-AGAAACGAGGGGG
Reference ( family-2081 ) : AGCATTTTA-CCCCTC-----TCGGGGGCCT----CTAGCTAT-CA---TCT--GTAATTTTT-------AGGTGA-CGCATGCG---CAA-A-AGNC-ATTGT---TTTAT-CATGGAT-GC----GAA--TTTNAACGGCGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTNGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--GT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--ACCT-G-GA-C-AGAAACGAGGGGG
gi|1 : AGCATTTTAACCCCTT-----TAGGGGGCCT----CTAGCTATGCAA--TCTT-GTAATTT---------AGGTGATCGCATGCG---CAA-AGAGAC-ATTGT---TTAATTCATGGAT-GCCGAAGAG--TTTAAGCGGAGGAAAAGAT-G---TATGGGTTG--AAATGA-CGTACGACT----TATT-AGCTGATTTTGT-ATAGAATTGGGTAGGTTT-T-AGTTGGAATTTACTTT--TCAAG-ATGA-ATACATTACT---AG-CTGAAGTTTTAG--G----TG-C--AT---TTT-CATATGCGATTCCGCAT-CGCATTT-AT--AACCT--GATA----TT-ATAAAT--CG-A----ATCGAA-----G-TGG----------GTC---G----AT--CTCCCTCAGTA----ATG--ATAT--ACGT-G-GATC-AGAATCGAGGGG
gi|10 : ttgtcattaatttcattaccgaagatatatgattaatatcaatgatttgtagctttacatatttctaattttatttgtaatctttgaaatctgcactcaagatttcaagtttgttaatttccattgattggctcctactcagtaattcctaatttgtcgtaattatgttgcatcaccgaaaatatcaacgcgtgtgagaacaatgtttcgattttccaagcgatttacctgcaagttaTTTGACAGCGGAAAGGAT-GCAATAT---TTG--AAAATA-CG-ATGA-TCAA-TA-T-GGTCGATTTAAT-TTACA---------GTTT-C-AGGTGG-ATTTAC--T--T-------------------------GCTAA---ATTAG--G----TA-A--GT---TTTTC-GA-GCGATT-CACAT-CAAG--T-GT--AACCT--GA-A----AT-A-AAAT--AG-A----ACCGAA-----G-CGC----------GAC--CG----AT--TTCCCACA-TACTTTATG--A-AA--GCTT-G-GA-C-AAAACTGAG
gi|11 : a----GAA--ATTCAACAGCGGAAAGG-T-G---TA-AGGTTG--AAACGA-CG-ACGA-T----TA-T-AGCTAATTTGGT-TTAGAATCTAAT-GGTTT-T-AGATGG-ATTTAT--T--TAAAG-ATGA-A-A-TTTTCT---GAACTGA---TTTAG--G----TA-C--AT---TTT-C-TT-GCGATT-CGCAG-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--TG-A----AAAGAA-----G-TGC----------GTC--TG----GT--TT-TCACA-
gi|12 : -T-AGCTGATTTTTG-TTAGAATTGGGT-GGTTT-T-AGTTGG-ATTTACA-T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTA-C-AA-GCGATT-CGCAT-CGCA--TAAT--AACCT--AA-A----GTAA-AAAT--CG-A----ATCGAA-----G-TGG----------GTC--GG----A---TTCCCAC---AGTTTA-GATA-AG--AGGTGG-GA-C-AGAAACGAGGGG
gi|13 : GATTTCAT-ACGAAATGGAAT-GGTTT-C-AGCTGG-ATTTAC--T--TGCGG-AGAA-ATC-ATTCCT---GGATTAA---TTTAA--G----CA-A--GT---TAA-A-GA-ACAATT-CACAT-CAAA--T-GT--AACCT--TA-A----AT-A-AAAT--CG-G----TTTGAA-----G-CGA----------GAC--TG----AT--TTTCCATA-CACCTTATG--A-AG--GCTT-G-GA-C-AGAAACGAAGGG
gi|14 : atcTGATTTAGT-GTGGAATTAAAT-G----------------TCAA--T--TTAAT-ATAA-A-A-ATCTCTCATGCATTGA---TTTAG--G------------------------GCAAGT-CATAT-AAAT--T-GC--AATCT--GA-A----TT-A-ACAT--TA-T----ACCAAA-----G-CACTACTGATACTGTCA-TT----AT--TTCTCACA-CACTTTATA--A-AG--ACTT-G-GA-C-AAAAACTTGGGGGa
gi|15 : T-G---TATGGGTTG--CAATGA-CG-ACGA-T----TA-T-AGCCGATTTTGT-TTAGATTTGGAT-GGTTT-T-AGTTGG-CTTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TG
gi|16 : TGATTTAGT-GAGAAATTGATT-GGTGT-C-ATTTGG-ATTTAC--T--T---------------TTA-T---GGATTGA---TTTAG--G----TA-A--GT---TTT-T-GA-ACAATT-CATAT-CAAA--T-GT--AA-CT--GA-A----GG-G-CAAC--TG-----------------G-TGC------------C--AGCAACAT--TTCCCACA-TACTTTGTA--C-TG--GCTT-T-GA-A-AGAAATGAG
gi|18 : tatTGA---TTTAG--GACCGTA-C--GTAAGTTT-T-TG-AAGATT-CACAT-CATA--T-GT--AACCT--GA-A----AC-A-AAATACCG-GTAGTATCGAA-----G-CAC----------GAT--TG----AT--TTCCCACA-TAGTTTAGG--A-AG--GCTT-G-GA-T-GGAAACGAGGGGG
gi|19 : tTA-ATTTCT---GGACTGA---TTTAG--G----TA-TTTAT---TTT-C-TA-GCGATT-TGCAT-TGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----GTCAAA-----G-TGC----------ATT--TG----AT--TTTCCACA-TACTTTATG--A-AG--GCCT-G-GA-C-AGAAACGGGGG
gi|2 : A-CTCCTC-----TTGGGGGCCT----CTAGCTAT-C
gi|20 : caatgaaaataaacaataatataatgcttttgaaaattagacataaaaaataatcatatactttacaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaagatagttgtgcttaatttcattgtaattaatttcatgaatttccgtactttaaatctaattttattttttatttagtgttattttcttttaatgcattgattccctatttgttaatttcagctgtttcctgtaatttataattttcgtaattacatgtatgtgcattcaccgaaatgcaatacatgtgacaagattgttcgatttccaagcgatttacatgcaagtaaaT-TAAGAATTGGAT-GTTTT-TTAGTTGG-ATTTAC--T--TCAAGCATGA-ATA-ATTACT---GG-CTGA--------------------------------TA-GCGATT-TGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CGAA----ATCGAA-----GTTGC----------GTC--TG----
gi|21 : CT----CTTGCTAA-CA---TTT--GTAATTT---------AGATGA-CGCATGCG---CAA-A-AGTC-ATTG----TTTAT-CATGGAT-GC----GAA--TTT--------GAAAAGAT-G---TTTGGGTTG--AAATAA-
gi|22 : -ATTTAC--T--GCAAG-ATGA-AAG-ATTACT---GGACTGA---TTTAG--T----TA-C--AT---TAT-C-TA-G-GATT-CGCAT-CGCA--T-AT--AAACT--GA-A----AT----AAT--CA-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TAgaaatgaatcttatatttt
gi|23 : ---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACTT--GA-A----AT-A-AAAT--TG-A----ATCAAA-----G-TGG----------GTC--TG----AT--TTCCCACA-TACATTATG--A-AG--AACT-G-GA-C-AGAAACGAGGGGG
gi|24 : GCAT-CGCA--T-CTGAAATAT--AA-ATATAAT-A-AAAT--CG-A----ATCGAA-----G-TGC----------ATC--TG----AT--TTCCAACA-TACTTTATG--A-AG--GCGT-G-GA-C-AGAAACGAGGGGG
gi|25 : ATT-CGCATTCGCA--A-AT--AACCT--GA-------T-A-AAAT--CG-A----ATCAAA-----G-TGG----------GTC--TG----A---TTCCCATA-TAC-TTATG--A-AG--AGCT-G-GA-C-CGAAACGAAGGGG
gi|26 : G-A----ATCGA------G-TGG----------GTCACTG----AT--TTCC-ACA-TACTTTATG--A-AG--AGCT-G-GA-CGAGAAACGAGc
gi|27 : TGA-CGCATGCA---CAA-A-AGCT-ATTG----TTTAT-AAT-GAG-GC----GAG--TTTC-ACAGCGGAAAAGA
gi|28 : A-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTCATA--A-AG--AGCT-G-GA-C-AGAAACGAGGCGG
gi|30 : CCCACA-TACTTTATG--A-AG--AGCT-G-GA-C-AGAAACGAGGGGG
gi|31 : T--TTCCCACA-TACTTTATG--A-AG--ACTT-G-GA-C-AGAAACGA
gi|32 : ACA-TATTTTATG--A-AG--AGTT-A-GA-C-AGAAACGAGGGGGt
gi|4 : AGCATTTTA-CCCCTC-----TTGGGAGCCT----CTAGCTAT-CA---TCT--GTAATTT---------AGATGA-CGCATGCG---GAA-A-AGAC-TTTGTAACTTTAT-CATGGAT-GC----GAA--TTTTAACTGAGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGT-T----AA-T-AGCTGATTTTGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTAAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTT-C-TA-GCGATT-CGCAT-TGCA--T-AT--AACCT--GA-T----AT-A-AAAT--CG-A----ATCTAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--AGCT-G-GA-C-AGAAAACAGGGGG
gi|5 : GCATTTTATCCCCTC-----CC-----CCTGCACCCAG-TAT-CACTCTCTTGATTATTTTT-------AGGTG--CGCATGCG---CAAGA-AGAC-ATTGT---TT-AT-CATGGAT-GC----GAAAGTTTTA-CGGAGGAAA-GAT-G---CA--GGTTG--AAATGA--A-ACGA-TATTATA-T-AGAT--TTTTGT-TTAGAAT--GAT-GGTTT-T-AGTTGG-ATT-AC--T--TCAAG-ATGA-TGA-ATTACT---GGACTGA---TTTAGAAG----GATC--AT---TTT-C-TA-G-GA-T-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-G-------CG--------------------------------GTC--AT----AT--CTCCCACA-CAAATAATG--A-AG--ACGT-G-GA-C-AGAAACAAGGGG
gi|6 : GTGA-CGCCTGCG---CAA-GGAGTCGATTGT---TT-AT-CATGTATTGC----GAA--CTCGAACG-TAGAAAAGATTG---TATGG-TTGGAAAATGAACG-ACGA-T----TA-TTAGCTGATTTTCTCTTAGAACTGAAT-GGTTTCT-AGTTGG-ATTTAC--TCTTCAA--ATGATATA-AGTAATA--GGACTGAC--TTTAG--G----TA-T---T---TTT-C-TA--C-ATT-CGCAT-CGCA--T-AT--ACCCT--GA-A----AT-A-AAAT---A-A----ATCGAAGGTAGG-TGC----------G----TG----ATGAGTCCCACA-AA----ATC--A-AGATACTT-GTGA-C-AGAAACGAG
gi|7 : aATGCGATGCAA-A-AGCC-ATTGT---TG-AT-CATGAAG-GC----GAA--TTTTAACAGCGGAAAAGGT-G---TA-GGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTTGT-TTAGAATTGAAT-GGTTT-T-AGTTGG-ATTTAC--A--TCAAG-TTGA-ATA-ATTTCT---GTACTGA---TTTTG--G----TA-C--AT---TTT-C-TA-GCAAAT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TCCCCACA-TACTTTATG--A-AG--GCCT-G-GA-C-AGAAAGGAGGGGa
gi|8 : -A-AGCT-ATTGT---TT-AT-GATGGAG-CC----GAG--TTTGA-CAGCGGAAAAGCT-G---CATGGTTTG--AAATAG-CG-ATGA-T----TA-T-AGTCGATTTAGT-ATAAAAATGAAT-AGTTT-C-AATTGG-ATTTAG--T--TGCAG-AGAA-ATC-ACTCCT---GGGTTAA---TTCAG--G----CA-A--GT---TTA-G-AA-ACGATT-CACAT-TAAA--T-GT--AACCTGAGA-A----AT-A-AAAT--CG-A----ATCGAA-----A-CGC----------AAC--TA----AT--TTCTCGCA-TACTTTATG--A-GG--GCTT-G-GA-C-AGAAATGAGGGG
gi|9 : TTTA-CCCCTCGGGGGTCGGGGGGCT----CTAGCGAT-CA---TGT--GTAATCTTTCAAAAATAGATTA-TGCATGCG---CAA-A-AGTC-ATTGT---TTT-T-CAac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAATGCAAAATAAACAATAATAGATAATATACTTTTGAGAATTAGACATACAAAATAATCATATATTTTACAAATAAGAAACAGATATGTATTTAATGTGCTTAATATCGTTATATAATTAATATCATGAATTTCGCGCTGAAATCTACATTTATTTTATTTAAATGTATTTCTTTAATACATCGATTCCCAATTTGTTAATTTCAGTTGCTTCCCGTAATTCCTAATTGTTCGTTATATATGTGCATTCACCGATATACTTACAGAACATGTCGTGAGAACAATGCTTGATTTCCAAGCGATTTACCGCAGTAAA
Unaligned ( gi|17 ): CGGTACCTAATTATTTTCTGTACTTTATTTCCATTGTTATTTTCTTTCAATGCATCAATTCCCAATTTATTGATTTTAGTTGCTTCCTGTAATTCATAATTTGTGCATTCAGAGAACATTATGTGCATTCATCGAAATACAATGCGTGTG
Unaligned ( gi|29 ): GAAGTGGGTCGGATTCCCACAGGTTTAGATACATGTAAGAGGTG
Alignments
lowQualScore : 1 22222 1111 222 333333333 1 1111 11111
lowQualScore : 6 00000 1 4444 6 222 666 8 0 777777777 5 888 4 8 1 4 9999 5 4 5 9999 66 999 3 1 4 777 5 55 4 4 4 7777 4 4 1 2 2 2 2 2 66 33 2 2 2 333 2 666 666 33 5555 00000 333 2 2 2 2 2 22 2 22 22 2 4444 2 2 22 444444 44444 1 8888888888 44 4444 22 1 22 1 22 1 1 1 1 1
lowQualScore : . ..... . .... . ... ... . . ......... . ... . . . . .... . . . .... .. ... . . . ... . .. . . . .... . . . . . . . . .. .. . . . ... . ... ... .. .... ..... ... . . . . . .. . .. .. . .... . . .. ...... ..... . .......... .. .... .. . .. . .. . . . . .
lowQualScore : 0 00000 4 2222 7 000 666 0 8 222222222 7 888 4 9 0 4 7777 7 4 0 4444 11 444 0 6 0 000 7 55 0 4 4 2222 0 0 0 9 9 9 9 7 33 77 7 7 7 777 0 999 555 22 0000 66666 999 2 2 2 1 0 88 0 88 88 0 2222 0 0 88 333333 55555 8 3333333333 55 0000 66 7 66 9 66 6 9 9 9 9
consensus : AGCATTTTA-CCCCTC-----TCGGGGGCCT----CTAGCTAT-CA---TCTTG-TAATTTTT-------AGGTGA-CGCATGCG---CAA-A-AGNC-ATTGT---TTTAT-CATGGAT-GC----GAA--TTTNAACGGCGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTNGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--GT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--ACCT-G-GA-C-AGAAACGAGGGGG
Reference ( family-2081 ) : AGCATTTTA-CCCCTC-----TCGGGGGCCT----CTAGCTAT-CA---TCTTG-TAATTTTT-------AGGTGA-CGCATGCG---CAA-A-AGNC-ATTGT---TTTAT-CATGGAT-GC----GAA--TTTNAACGGCGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTNGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--GT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--ACCT-G-GA-C-AGAAACGAGGGGG
gi|1 : AGCATTTTAACCCCTT-----TAGGGGGCCT----CTAGCTATGCAA--TCTTG-TAATTT---------AGGTGATCGCATGCG---CAA-AGAGAC-ATTGT---TTAATTCATGGAT-GCCGAAGAG--TTTAAGCGGAGGAAAAGAT-G---TATGGGTTG--AAATGA-CGTACGACT----TATT-AGCTGATTTTGT-ATAGAATTGGGTAGGTTT-T-AGTTGGAATTTACTTT--TCAAG-ATGA-ATACATTACT---AG-CTGAAGTTTTAG--G----TG-C--AT---TTT-CATATGCGATTCCGCAT-CGCATTT-AT--AACCT--GATA----TT-ATAAAT--CG-A----ATCGAA-----G-TGG----------GTC---G----AT--CTCCCTCAGTA----ATG--ATAT--ACGT-G-GATC-AGAATCGAGGGG
gi|10 : ttgtcattaatttcattaccgaagatatatgattaatatcaatgatttgtagctttacatatttctaattttatttgtaatctttgaaatctgcactcaagatttcaagtttgttaatttccattgattggctcctactcagtaattcctaatttgtcgtaattatgttgcatcaccgaaaatatcaacgcgtgtgagaacaatgtttcgattttccaagcgatttacctgcaagttaTTTGACAGCGGAAAGGAT-GCAATAT---TTG--AAAATA-CG-ATGA-TCAA-TA-T-GGTCGATTTAAT-TTACA---------GTTT-C-AGGTGG-ATTTAC--T--T-------------------------GCTAA---ATTAG--G----TA-A--GT---TTTTC-GA-GCGATT-CACAT-CAAG--T-GT--AACCT--GA-A----AT-A-AAAT--AG-A----ACCGAA-----G-CGC----------GAC--CG----AT--TTCCCACA-TACTTTATG--A-AA--GCTT-G-GA-C-AAAACTGAG
gi|11 : a----GAA--ATTCAACAGCGGAAAGG-T-G---TA-AGGTTG--AAACGA-CG-ACGA-T----TA-T-AGCTAATTTGGT-TTAGAATCTAAT-GGTTT-T-AGATGG-ATTTAT--T--TAAAG-ATGA-A-A-TTTTCT---GAACTGA---TTTAG--G----TA-C--AT---TTT-C-TT-GCGATT-CGCAG-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--TG-A----AAAGAA-----G-TGC----------GTC--TG----GT--TT-TCACA-
gi|12 : -T-AGCTGATTTTTG-TTAGAATTGGGT-GGTTT-T-AGTTGG-ATTTACA-T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTA-C-AA-GCGATT-CGCAT-CGCA--TAAT--AACCT--AA-A----GTAA-AAAT--CG-A----ATCGAA-----G-TGG----------GTC--GG----A---TTCCCAC---AGTTTA-GATA-AG--AGGTGG-GA-C-AGAAACGAGGGG
gi|13 : GATTTCAT-ACGAAATGGAAT-GGTTT-C-AGCTGG-ATTTAC--T--TGCGG-AGAA-ATC-ATTCCT---GGATTAA---TTTAA--G----CA-A--GT---TAA-A-GA-ACAATT-CACAT-CAAA--T-GT--AACCT--TA-A----AT-A-AAAT--CG-G----TTTGAA-----G-CGA----------GAC--TG----AT--TTTCCATA-CACCTTATG--A-AG--GCTT-G-GA-C-AGAAACGAAGGG
gi|14 : atcTGATTTAGT-GTGGAATTAAAT-G----------------TCAA--T--TTAAT-ATAA-A-A-ATCTCTCATGCATTGA---TTTAG--G------------------------GCAAGT-CATAT-AAAT--T-GC--AATCT--GA-A----TT-A-ACAT--TA-T----ACCAAA-----G-CACTACTGATACTGTCA-TT----AT--TTCTCACA-CACTTTATA--A-AG--ACTT-G-GA-C-AAAAACTTGGGGGa
gi|15 : T-G---TATGGGTTG--CAATGA-CG-ACGA-T----TA-T-AGCCGATTTTGT-TTAGATTTGGAT-GGTTT-T-AGTTGG-CTTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TG
gi|16 : TGATTTAGT-GAGAAATTGATT-GGTGT-C-ATTTGG-ATTTAC--T--T---------------TTA-T---GGATTGA---TTTAG--G----TA-A--GT---TTT-T-GA-ACAATT-CATAT-CAAA--T-GT--AA-CT--GA-A----GG-G-CAAC--TG-----------------G-TGC------------C--AGCAACAT--TTCCCACA-TACTTTGTA--C-TG--GCTT-T-GA-A-AGAAATGAG
gi|18 : tatTGA---TTTAG--GACCGTA-C--GTAAGTTT-T-TG-AAGATT-CACAT-CATA--T-GT--AACCT--GA-A----AC-A-AAATACCG-GTAGTATCGAA-----G-CAC----------GAT--TG----AT--TTCCCACA-TAGTTTAGG--A-AG--GCTT-G-GA-T-GGAAACGAGGGGG
gi|19 : tTA-ATTTCT---GGACTGA---TTTAG--G----TA-TTTAT---TTT-C-TA-GCGATT-TGCAT-TGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----GTCAAA-----G-TGC----------ATT--TG----AT--TTTCCACA-TACTTTATG--A-AG--GCCT-G-GA-C-AGAAACGGGGG
gi|2 : A-CTCCTC-----TTGGGGGCCT----CTAGCTAT-C
gi|20 : caatgaaaataaacaataatataatgcttttgaaaattagacataaaaaataatcatatactttacaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaagatagttgtgcttaatttcattgtaattaatttcatgaatttccgtactttaaatctaattttattttttatttagtgttattttcttttaatgcattgattccctatttgttaatttcagctgtttcctgtaatttataattttcgtaattacatgtatgtgcattcaccgaaatgcaatacatgtgacaagattgttcgatttccaagcgatttacatgcaagtaaaT-TAAGAATTGGAT-GTTTT-TTAGTTGG-ATTTAC--T--TCAAGCATGA-ATA-ATTACT---GG-CTGA--------------------------------TA-GCGATT-TGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CGAA----ATCGAA-----GTTGC----------GTC--TG----
gi|21 : CT----CTTGCTAA-CA---T-TTG-TAATTT---------AGATGA-CGCATGCG---CAA-A-AGTC-ATTG----TTTAT-CATGGAT-GC----GAA--TTT--------GAAAAGAT-G---TTTGGGTTG--AAATAA-
gi|22 : -ATTTAC--T--GCAAG-ATGA-AAG-ATTACT---GGACTGA---TTTAG--T----TA-C--AT---TAT-C-TA-G-GATT-CGCAT-CGCA--T-AT--AAACT--GA-A----AT----AAT--CA-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TAgaaatgaatcttatatttt
gi|23 : ---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACTT--GA-A----AT-A-AAAT--TG-A----ATCAAA-----G-TGG----------GTC--TG----AT--TTCCCACA-TACATTATG--A-AG--AACT-G-GA-C-AGAAACGAGGGGG
gi|24 : GCAT-CGCA--T-CTGAAATAT--AA-ATATAAT-A-AAAT--CG-A----ATCGAA-----G-TGC----------ATC--TG----AT--TTCCAACA-TACTTTATG--A-AG--GCGT-G-GA-C-AGAAACGAGGGGG
gi|25 : ATT-CGCATTCGCA--A-AT--AACCT--GA-------T-A-AAAT--CG-A----ATCAAA-----G-TGG----------GTC--TG----A---TTCCCATA-TAC-TTATG--A-AG--AGCT-G-GA-C-CGAAACGAAGGGG
gi|26 : G-A----ATCGA------G-TGG----------GTCACTG----AT--TTCC-ACA-TACTTTATG--A-AG--AGCT-G-GA-CGAGAAACGAGc
gi|27 : TGA-CGCATGCA---CAA-A-AGCT-ATTG----TTTAT-AAT-GAG-GC----GAG--TTTC-ACAGCGGAAAAGA
gi|28 : A-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTCATA--A-AG--AGCT-G-GA-C-AGAAACGAGGCGG
gi|30 : CCCACA-TACTTTATG--A-AG--AGCT-G-GA-C-AGAAACGAGGGGG
gi|31 : T--TTCCCACA-TACTTTATG--A-AG--ACTT-G-GA-C-AGAAACGA
gi|32 : ACA-TATTTTATG--A-AG--AGTT-A-GA-C-AGAAACGAGGGGGt
gi|4 : AGCATTTTA-CCCCTC-----TTGGGAGCCT----CTAGCTAT-CA---TC-TG-TAA--TTT-------AGATGA-CGCATGCG---GAA-A-AGAC-TTTGTAACTTTAT-CATGGAT-GC----GAA--TTTTAACTGAGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGT-T----AA-T-AGCTGATTTTGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTAAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTT-C-TA-GCGATT-CGCAT-TGCA--T-AT--AACCT--GA-T----AT-A-AAAT--CG-A----ATCTAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--AGCT-G-GA-C-AGAAAACAGGGGG
gi|5 : GCATTTTATCCCCTC-----CC-----CCTGCACCCAG-TAT-CACTCTCTTGATTATTTTT-------AGGTG--CGCATGCG---CAAGA-AGAC-ATTGT---TT-AT-CATGGAT-GC----GAAAGTTTTA-CGGAGGAAA-GAT-G---CA--GGTTG--AAATGA--A-ACGA-TATTATA-T-AGAT--TTTTGT-TTAGAAT--GAT-GGTTT-T-AGTTGG-ATT-AC--T--TCAAG-ATGA-TGA-ATTACT---GGACTGA---TTTAGAAG----GATC--AT---TTT-C-TA-G-GA-T-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-G-------CG--------------------------------GTC--AT----AT--CTCCCACA-CAAATAATG--A-AG--ACGT-G-GA-C-AGAAACAAGGGG
gi|6 : GTGA-CGCCTGCG---CAA-GGAGTCGATTGT---TT-AT-CATGTATTGC----GAA--CTCGAACG-TAGAAAAGATTG---TATGG-TTGGAAAATGAACG-ACGA-T----TA-TTAGCTGATTTTCTCTTAGAACTGAAT-GGTTTCT-AGTTGG-ATTTAC--TCTTCAA--ATGATATA-AGTAATA--GGACTGAC--TTTAG--G----TA-T---T---TTT-C-TA--C-ATT-CGCAT-CGCA--T-AT--ACCCT--GA-A----AT-A-AAAT---A-A----ATCGAAGGTAGG-TGC----------G----TG----ATGAGTCCCACA-AA----ATC--A-AGATACTT-GTGA-C-AGAAACGAG
gi|7 : aATGCGATGCAA-A-AGCC-ATTGT---TG-AT-CATGAAG-GC----GAA--TTTTAACAGCGGAAAAGGT-G---TA-GGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTTGT-TTAGAATTGAAT-GGTTT-T-AGTTGG-ATTTAC--A--TCAAG-TTGA-ATA-ATTTCT---GTACTGA---TTTTG--G----TA-C--AT---TTT-C-TA-GCAAAT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TCCCCACA-TACTTTATG--A-AG--GCCT-G-GA-C-AGAAAGGAGGGGa
gi|8 : -A-AGCT-ATTGT---TT-AT-GATGGAG-CC----GAG--TTTGA-CAGCGGAAAAGCT-G---CATGGTTTG--AAATAG-CG-ATGA-T----TA-T-AGTCGATTTAGT-ATAAAAATGAAT-AGTTT-C-AATTGG-ATTTAG--T--TGCAG-AGAA-ATC-ACTCCT---GGGTTAA---TTCAG--G----CA-A--GT---TTA-G-AA-ACGATT-CACAT-TAAA--T-GT--AACCTGAGA-A----AT-A-AAAT--CG-A----ATCGAA-----A-CGC----------AAC--TA----AT--TTCTCGCA-TACTTTATG--A-GG--GCTT-G-GA-C-AGAAATGAGGGG
gi|9 : TTTA-CCCCTCGGGGGTCGGGGGGCT----CTAGCGAT-CA---TGT-G-TAATCTTTCAAAAATAGATTA-TGCATGCG---CAA-A-AGTC-ATTGT---TTT-T-CAac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAATGCAAAATAAACAATAATAGATAATATACTTTTGAGAATTAGACATACAAAATAATCATATATTTTACAAATAAGAAACAGATATGTATTTAATGTGCTTAATATCGTTATATAATTAATATCATGAATTTCGCGCTGAAATCTACATTTATTTTATTTAAATGTATTTCTTTAATACATCGATTCCCAATTTGTTAATTTCAGTTGCTTCCCGTAATTCCTAATTGTTCGTTATATATGTGCATTCACCGATATACTTACAGAACATGTCGTGAGAACAATGCTTGATTTCCAAGCGATTTACCGCAGTAAA
Unaligned ( gi|17 ): CGGTACCTAATTATTTTCTGTACTTTATTTCCATTGTTATTTTCTTTCAATGCATCAATTCCCAATTTATTGATTTTAGTTGCTTCCTGTAATTCATAATTTGTGCATTCAGAGAACATTATGTGCATTCATCGAAATACAATGCGTGTG
Unaligned ( gi|29 ): GAAGTGGGTCGGATTCCCACAGGTTTAGATACATGTAAGAGGTG
Alignments
lowQualScore : 1 22222 1111 222 333333333 1 1111 11111
lowQualScore : 6 00000 1 4444 6 222 666 8 0 777777777 5 888 4 8 1 4 9999 5 4 5 9999 66 999 3 1 4 777 5 55 4 4 4 7777 4 4 1 2 2 2 2 2 66 33 2 2 2 333 2 666 666 33 5555 00000 333 2 2 2 2 2 22 2 22 22 2 4444 2 2 22 444444 44444 1 8888888888 44 4444 22 1 22 1 22 1 1 1 1 1
lowQualScore : . ..... . .... . ... ... . . ......... . ... . . . . .... . . . .... .. ... . . . ... . .. . . . .... . . . . . . . . .. .. . . . ... . ... ... .. .... ..... ... . . . . . .. . .. .. . .... . . .. ...... ..... . .......... .. .... .. . .. . .. . . . . .
lowQualScore : 0 00000 4 2222 7 000 666 0 8 222222222 7 888 4 9 0 4 7777 7 4 0 4444 11 444 0 6 0 000 7 55 0 4 4 2222 0 0 0 9 9 9 9 7 33 77 7 7 7 777 0 999 555 22 0000 66666 999 2 2 2 1 0 88 0 88 88 0 2222 0 0 88 333333 55555 8 3333333333 55 0000 66 7 66 9 66 6 9 9 9 9
consensus : AGCATTTTA-CCCCTC-----TCGGGGGCCT----CTAGCTAT-CA---TCTTG-TAATTTTT-------AGGTGA-CGCATGCG---CAA-A-AGNC-ATTGT---TTTAT-CATGGAT-GC----GAA--TTTNAACGGCGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTNGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--GT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--ACCT-G-GA-C-AGAAACGAGGGGG
Reference ( family-2081 ) : AGCATTTTA-CCCCTC-----TCGGGGGCCT----CTAGCTAT-CA---TCTTG-TAATTTTT-------AGGTGA-CGCATGCG---CAA-A-AGNC-ATTGT---TTTAT-CATGGAT-GC----GAA--TTTNAACGGCGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTNGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--GT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--ACCT-G-GA-C-AGAAACGAGGGGG
gi|1 : AGCATTTTAACCCCTT-----TAGGGGGCCT----CTAGCTATGCAA--TCTTG-TAATTT---------AGGTGATCGCATGCG---CAA-AGAGAC-ATTGT---TTAATTCATGGAT-GCCGAAGAG--TTTAAGCGGAGGAAAAGAT-G---TATGGGTTG--AAATGA-CGTACGACT----TATT-AGCTGATTTTGT-ATAGAATTGGGTAGGTTT-T-AGTTGGAATTTACTTT--TCAAG-ATGA-ATACATTACT---AG-CTGAAGTTTTAG--G----TG-C--AT---TTT-CATATGCGATTCCGCAT-CGCATTT-AT--AACCT--GATA----TT-ATAAAT--CG-A----ATCGAA-----G-TGG----------GTC---G----AT--CTCCCTCAGTA----ATG--ATAT--ACGT-G-GATC-AGAATCGAGGGG
gi|10 : ttgtcattaatttcattaccgaagatatatgattaatatcaatgatttgtagctttacatatttctaattttatttgtaatctttgaaatctgcactcaagatttcaagtttgttaatttccattgattggctcctactcagtaattcctaatttgtcgtaattatgttgcatcaccgaaaatatcaacgcgtgtgagaacaatgtttcgattttccaagcgatttacctgcaagttaTTTGACAGCGGAAAGGAT-GCAATAT---TTG--AAAATA-CG-ATGA-TCAA-TA-T-GGTCGATTTAAT-TTACA---------GTTT-C-AGGTGG-ATTTAC--T--T-------------------------GCTAA---ATTAG--G----TA-A--GT---TTTTC-GA-GCGATT-CACAT-CAAG--T-GT--AACCT--GA-A----AT-A-AAAT--AG-A----ACCGAA-----G-CGC----------GAC--CG----AT--TTCCCACA-TACTTTATG--A-AA--GCTT-G-GA-C-AAAACTGAG
gi|11 : a----GAA--ATTCAACAGCGGAAAGG-T-G---TA-AGGTTG--AAACGA-CG-ACGA-T----TA-T-AGCTAATTTGGT-TTAGAATCTAAT-GGTTT-T-AGATGG-ATTTAT--T--TAAAG-ATGA-A-A-TTTTCT---GAACTGA---TTTAG--G----TA-C--AT---TTT-C-TT-GCGATT-CGCAG-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--TG-A----AAAGAA-----G-TGC----------GTC--TG----GT--TT-TCACA-
gi|12 : -T-AGCTGATTTTTG-TTAGAATTGGGT-GGTTT-T-AGTTGG-ATTTACA-T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTA-C-AA-GCGATT-CGCAT-CGCA--TAAT--AACCT--AA-A----GTAA-AAAT--CG-A----ATCGAA-----G-TGG----------GTC--GG----A---TTCCCAC---AGTTTA-GATA-AG--AGGTGG-GA-C-AGAAACGAGGGG
gi|13 : GATTTCAT-ACGAAATGGAAT-GGTTT-C-AGCTGG-ATTTAC--T--TGCGG-AGAA-ATC-ATTCCT---GGATTAA---TTTAA--G----CA-A--GT---TAA-A-GA-ACAATT-CACAT-CAAA--T-GT--AACCT--TA-A----AT-A-AAAT--CG-G----TTTGAA-----G-CGA----------GAC--TG----AT--TTTCCATA-CACCTTATG--A-AG--GCTT-G-GA-C-AGAAACGAAGGG
gi|14 : atcTGATTTAGT-GTGGAATTAAAT-G----------------TCAA--T--TTAAT-ATAA-A-A-ATCTCTCATGCATTGA---TTTAG--G------------------------GCAAGT-CATAT-AAAT--T-GC--AATCT--GA-A----TT-A-ACAT--TA-T----ACCAAA-----G-CACTACTGATACTGTCA-TT----AT--TTCTCACA-CACTTTATA--A-AG--ACTT-G-GA-C-AAAAACTTGGGGGa
gi|15 : T-G---TATGGGTTG--CAATGA-CG-ACGA-T----TA-T-AGCCGATTTTGT-TTAGATTTGGAT-GGTTT-T-AGTTGG-CTTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TG
gi|16 : TGATTTAGT-GAGAAATTGATT-GGTGT-C-ATTTGG-ATTTAC--T--T---------------TTA-T---GGATTGA---TTTAG--G----TA-A--GT---TTT-T-GA-ACAATT-CATAT-CAAA--T-GT--AA-CT--GA-A----GG-G-CAAC--TG-----------------G-TGC------------C--AGCAACAT--TTCCCACA-TACTTTGTA--C-TG--GCTT-T-GA-A-AGAAATGAG
gi|18 : tatTGA---TTTAG--GACCGTA-C--GTAAGTTT-T-TG-AAGATT-CACAT-CATA--T-GT--AACCT--GA-A----AC-A-AAATACCG-GTAGTATCGAA-----G-CAC----------GAT--TG----AT--TTCCCACA-TAGTTTAGG--A-AG--GCTT-G-GA-T-GGAAACGAGGGGG
gi|19 : tTA-ATTTCT---GGACTGA---TTTAG--G----TA-TTTAT---TTT-C-TA-GCGATT-TGCAT-TGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----GTCAAA-----G-TGC----------ATT--TG----AT--TTTCCACA-TACTTTATG--A-AG--GCCT-G-GA-C-AGAAACGGGGG
gi|2 : A-CTCCTC-----TTGGGGGCCT----CTAGCTAT-C
gi|20 : caatgaaaataaacaataatataatgcttttgaaaattagacataaaaaataatcatatactttacaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaagatagttgtgcttaatttcattgtaattaatttcatgaatttccgtactttaaatctaattttattttttatttagtgttattttcttttaatgcattgattccctatttgttaatttcagctgtttcctgtaatttataattttcgtaattacatgtatgtgcattcaccgaaatgcaatacatgtgacaagattgttcgatttccaagcgatttacatgcaagtaaaT-TAAGAATTGGAT-GTTTT-TTAGTTGG-ATTTAC--T--TCAAGCATGA-ATA-ATTACT---GG-CTGA--------------------------------TA-GCGATT-TGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CGAA----ATCGAA-----GTTGC----------GTC--TG----
gi|21 : CT----CTTGCTAA-CA---T-TTG-TAATTT---------AGATGA-CGCATGCG---CAA-A-AGTC-ATTG----TTTAT-CATGGAT-GC----GAA--TTT--------GAAAAGAT-G---TTTGGGTTG--AAATAA-
gi|22 : -ATTTAC--T--GCAAG-ATGA-AAG-ATTACT---GGACTGA---TTTAG--T----TA-C--AT---TAT-C-TA-G-GATT-CGCAT-CGCA--T-AT--AAACT--GA-A----AT----AAT--CA-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TAgaaatgaatcttatatttt
gi|23 : ---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACTT--GA-A----AT-A-AAAT--TG-A----ATCAAA-----G-TGG----------GTC--TG----AT--TTCCCACA-TACATTATG--A-AG--AACT-G-GA-C-AGAAACGAGGGGG
gi|24 : GCAT-CGCA--T-CTGAAATAT--AA-ATATAAT-A-AAAT--CG-A----ATCGAA-----G-TGC----------ATC--TG----AT--TTCCAACA-TACTTTATG--A-AG--GCGT-G-GA-C-AGAAACGAGGGGG
gi|25 : ATT-CGCATTCGCA--A-AT--AACCT--GA-------T-A-AAAT--CG-A----ATCAAA-----G-TGG----------GTC--TG----A---TTCCCATA-TAC-TTATG--A-AG--AGCT-G-GA-C-CGAAACGAAGGGG
gi|26 : G-A----ATCGA------G-TGG----------GTCACTG----AT--TTCC-ACA-TACTTTATG--A-AG--AGCT-G-GA-CGAGAAACGAGc
gi|27 : TGA-CGCATGCA---CAA-A-AGCT-ATTG----TTTAT-AAT-GAG-GC----GAG--TTTC-ACAGCGGAAAAGA
gi|28 : A-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTCATA--A-AG--AGCT-G-GA-C-AGAAACGAGGCGG
gi|30 : CCCACA-TACTTTATG--A-AG--AGCT-G-GA-C-AGAAACGAGGGGG
gi|31 : T--TTCCCACA-TACTTTATG--A-AG--ACTT-G-GA-C-AGAAACGA
gi|32 : ACA-TATTTTATG--A-AG--AGTT-A-GA-C-AGAAACGAGGGGGt
gi|4 : AGCATTTTA-CCCCTC-----TTGGGAGCCT----CTAGCTAT-CA---TC-TG-TAA--TTT-------AGATGA-CGCATGCG---GAA-A-AGAC-TTTGTAACTTTAT-CATGGAT-GC----GAA--TTTTAACTGAGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGT-T----AA-T-AGCTGATTTTGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTAAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTT-C-TA-GCGATT-CGCAT-TGCA--T-AT--AACCT--GA-T----AT-A-AAAT--CG-A----ATCTAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--AGCT-G-GA-C-AGAAAACAGGGGG
gi|5 : GCATTTTATCCCCTC-----CC-----CCTGCACCCAG-TAT-CACTCTCTTGATTATTTTT-------AGGTG--CGCATGCG---CAAGA-AGAC-ATTGT---TT-AT-CATGGAT-GC----GAAAGTTTTA-CGGAGGAAA-GAT-G---CA--GGTTG--AAATGA--A-ACGA-TATTATA-T-AGAT--TTTTGT-TTAGAAT--GAT-GGTTT-T-AGTTGG-ATT-AC--T--TCAAG-ATGA-TGA-ATTACT---GGACTGA---TTTAGAAG----GATC--AT---TTT-C-TA-G-GA-T-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-G-------CG--------------------------------GTC--AT----AT--CTCCCACA-CAAATAATG--A-AG--ACGT-G-GA-C-AGAAACAAGGGG
gi|6 : GTGA-CGCCTGCG---CAA-GGAGTCGATTGT---TT-AT-CATGTATTGC----GAA--CTCGAACG-TAGAAAAGATTG---TATGG-TTGGAAAATGAACG-ACGA-T----TA-TTAGCTGATTTTCTCTTAGAACTGAAT-GGTTTCT-AGTTGG-ATTTAC--TCTTCAA--ATGATATA-AGTAATA--GGACTGAC--TTTAG--G----TA-T---T---TTT-C-TA--C-ATT-CGCAT-CGCA--T-AT--ACCCT--GA-A----AT-A-AAAT---A-A----ATCGAAGGTAGG-TGC----------G----TG----ATGAGTCCCACA-AA----ATC--A-AGATACTT-GTGA-C-AGAAACGAG
gi|7 : aATGCGATGCAA-A-AGCC-ATTGT---TG-AT-CATGAAG-GC----GAA--TTTTAACAGCGGAAAAGGT-G---TA-GGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTTGT-TTAGAATTGAAT-GGTTT-T-AGTTGG-ATTTAC--A--TCAAG-TTGA-ATA-ATTTCT---GTACTGA---TTTTG--G----TA-C--AT---TTT-C-TA-GCAAAT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TCCCCACA-TACTTTATG--A-AG--GCCT-G-GA-C-AGAAAGGAGGGGa
gi|8 : -A-AGCT-ATTGT---TT-AT-GATGGAG-CC----GAG--TTTGA-CAGCGGAAAAGCT-G---CATGGTTTG--AAATAG-CG-ATGA-T----TA-T-AGTCGATTTAGT-ATAAAAATGAAT-AGTTT-C-AATTGG-ATTTAG--T--TGCAG-AGAA-ATC-ACTCCT---GGGTTAA---TTCAG--G----CA-A--GT---TTA-G-AA-ACGATT-CACAT-TAAA--T-GT--AACCTGAGA-A----AT-A-AAAT--CG-A----ATCGAA-----A-CGC----------AAC--TA----AT--TTCTCGCA-TACTTTATG--A-GG--GCTT-G-GA-C-AGAAATGAGGGG
gi|9 : TTTA-CCCCTCGGGGGTCGGGGGGCT----CTAGCGAT-CA---TGT-G-TAATCTTTCAAAAATAGATTA-TGCATGCG---CAA-A-AGTC-ATTGT---TTT-T-CAac
blockSeqs : T GGGGG T GCAC . CTC CTT A TTCAAAAAT . ATG G G T G TAAC T . T . AG TGA A C T CAA T GA A . . ATTA . T A C . C T . A CT A C T TA T CAT C AA ACCG TTTA AAG T . . . T . A GA GA . TATA A . AC GTAGT GGTAG T TACTGATACT AC CAAC GA . AT . AT T G T . G
blockSeqs : . . T . . . TT . TT . . . . C . T T . . . . CAA A C . . T . . . . CAA . . G . . . . . . . C . . TC A A . . . TCA . . . . . . . . . . . . . . . AA . . . A . . . . . . G . . . .
blockSeqs : . . C . . . CT . TT . . . . A . T T . . . . TAA A C . . T . . . . . . . T . . . . . . . G . . TA C . . . . AG . . . . . . . . . . . . . . . A . . . . . . . . . . T . . . .
blockSeqs : . . C . . . GT . . . . . . A . T T . . . . GAA T A . . T . . . . . . . C . . . . . . . T . . TA T . . . . CA . . . . . . . . . . . . . . . A . . . . . . . . . . T . . . .
blockSeqs : . . . . . . T . T . . . . . TAA G A . . T . . . . . . . A . . . . . . . C . . TA A . . . . CA . . . . . . . . . . . . . . . A . . . . . . . . . . T . . . .
blockSeqs : . . . . C . T . . . . . CA G T . . T . . . . . . . T . . . . . . . C . . AG A . . . . AG . . . . . . . . . . . . . . . G . . . . . . . . . . T . . . .
blockSeqs : . . . C . . . . . . . TA A C . . . . . . . . . . A . . . . . . . C . . TA T . . . . CA . . . . . . . . . . . . . . . T . . . . . . . . . . C . . . .
blockSeqs : . . T . . . . . . GA A C . . . . . . . . . . T . . . . . . . C . . GA A . . . . AG . . . . . . . . . . . . . . . A . . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . . . T . . . . . . . C . . TA A . . . . CG . . . . . . . . . . . . . . . A . . . . . . . . . . G . . . .
blockSeqs : T . . . . . . . C . . TA A . . . . CA . . . . . . . . . . . . . . . A . . . . . . . . . . C . . . .
blockSeqs : T . . . . . . . C . . TC A . . . . CA . . . . . . . . . . . . . . . A . . . . . . . . . . C . . . .
blockSeqs : A . . . . . . . G . . A A . . . . CA . . . . . . . . . . . . . . . A . . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . . . A T . . . . AG . . . . . . . . . . . . . . . A . . . . . . . . . . C . . . .
blockSeqs : . . . . . . . C . . . . T . . . . . . . . . . . . . . . A . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . . . . . . . . A . . . . . . . . . . G . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . . . . T . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons : *** NT* TT******* **** ** TA* *** **
originalCons : AGCATTTTA-CCCCTC-----TCGGGGGCCT----CTAGCTAT-CA---TCTTG-TAATTTTT-------AGGTGA-CGCATGCG---CAA-A-AGNC-ATTGT---TTTAT-CATGGAT-GC----GAA--TTTNAACGGCGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTNGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--GT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--ACCT-G-GA-C-AGAAACGAGGGGG
finalCons : AGCATTTTA-CCCCTC-----TCGGGGGCCT----CTAGCTAT-CA---TNT-G-TAATTTTT-------AGGTGA-CGCATGCG---CAA-A-AGNC-ATTGT---TTTAT-CATGGAT-GC----GAA--TTTNAACGGCGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTNGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--GT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--ACCT-G-GA-C-AGAAACGAGGGGG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAATGCAAAATAAACAATAATAGATAATATACTTTTGAGAATTAGACATACAAAATAATCATATATTTTACAAATAAGAAACAGATATGTATTTAATGTGCTTAATATCGTTATATAATTAATATCATGAATTTCGCGCTGAAATCTACATTTATTTTATTTAAATGTATTTCTTTAATACATCGATTCCCAATTTGTTAATTTCAGTTGCTTCCCGTAATTCCTAATTGTTCGTTATATATGTGCATTCACCGATATACTTACAGAACATGTCGTGAGAACAATGCTTGATTTCCAAGCGATTTACCGCAGTAAA
Unaligned ( gi|17 ): CGGTACCTAATTATTTTCTGTACTTTATTTCCATTGTTATTTTCTTTCAATGCATCAATTCCCAATTTATTGATTTTAGTTGCTTCCTGTAATTCATAATTTGTGCATTCAGAGAACATTATGTGCATTCATCGAAATACAATGCGTGTG
Unaligned ( gi|29 ): GAAGTGGGTCGGATTCCCACAGGTTTAGATACATGTAAGAGGTG
Alignments
lowQualScore : 1 22222 1111 22222222 555555555 1 1111 11111
lowQualScore : 6 00000 1 4444 6 66666666 8 111111111 5 888 4 8 1 4 9999 5 4 5 9999 66 999 3 1 4 777 5 55 4 4 4 7777 4 4 1 2 2 2 2 2 66 33 2 2 2 333 2 666 666 33 5555 00000 333 2 2 2 2 2 22 2 22 22 2 4444 2 2 22 444444 44444 1 8888888888 44 4444 22 1 22 1 22 1 1 1 1 1
lowQualScore : . ..... . .... . ........ . ......... . ... . . . . .... . . . .... .. ... . . . ... . .. . . . .... . . . . . . . . .. .. . . . ... . ... ... .. .... ..... ... . . . . . .. . .. .. . .... . . .. ...... ..... . .......... .. .... .. . .. . .. . . . . .
lowQualScore : 0 00000 4 2222 7 00000000 0 888888888 7 888 4 9 0 4 7777 7 4 0 4444 11 444 0 6 0 000 7 55 0 4 4 2222 0 0 0 9 9 9 9 7 33 77 7 7 7 777 0 999 555 22 0000 66666 999 2 2 2 1 0 88 0 88 88 0 2222 0 0 88 333333 55555 8 3333333333 55 0000 66 7 66 9 66 6 9 9 9 9
consensus : AGCATTTTA-CCCCTC-----TCGGGGGCCT----CTAGCTAT-CA--TT----TG-TAATTTT-------TAGGTGA-CGCATGCG---CAA-A-AGNC-ATTGT---TTTAT-CATGGAT-GC----GAA--TTTNAACGGCGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTNGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--GT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--ACCT-G-GA-C-AGAAACGAGGGGG
Reference ( family-2081 ) : AGCATTTTA-CCCCTC-----TCGGGGGCCT----CTAGCTAT-CA--TN----TG-TAATTTT-------TAGGTGA-CGCATGCG---CAA-A-AGNC-ATTGT---TTTAT-CATGGAT-GC----GAA--TTTNAACGGCGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTNGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--GT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--ACCT-G-GA-C-AGAAACGAGGGGG
gi|1 : AGCATTTTAACCCCTT-----TAGGGGGCCT----CTAGCTATGCAATCT----TG-TAATTT---------AGGTGATCGCATGCG---CAA-AGAGAC-ATTGT---TTAATTCATGGAT-GCCGAAGAG--TTTAAGCGGAGGAAAAGAT-G---TATGGGTTG--AAATGA-CGTACGACT----TATT-AGCTGATTTTGT-ATAGAATTGGGTAGGTTT-T-AGTTGGAATTTACTTT--TCAAG-ATGA-ATACATTACT---AG-CTGAAGTTTTAG--G----TG-C--AT---TTT-CATATGCGATTCCGCAT-CGCATTT-AT--AACCT--GATA----TT-ATAAAT--CG-A----ATCGAA-----G-TGG----------GTC---G----AT--CTCCCTCAGTA----ATG--ATAT--ACGT-G-GATC-AGAATCGAGGGG
gi|10 : ttgtcattaatttcattaccgaagatatatgattaatatcaatgatttgtagctttacatatttctaattttatttgtaatctttgaaatctgcactcaagatttcaagtttgttaatttccattgattggctcctactcagtaattcctaatttgtcgtaattatgttgcatcaccgaaaatatcaacgcgtgtgagaacaatgtttcgattttccaagcgatttacctgcaagttaTTTGACAGCGGAAAGGAT-GCAATAT---TTG--AAAATA-CG-ATGA-TCAA-TA-T-GGTCGATTTAAT-TTACA---------GTTT-C-AGGTGG-ATTTAC--T--T-------------------------GCTAA---ATTAG--G----TA-A--GT---TTTTC-GA-GCGATT-CACAT-CAAG--T-GT--AACCT--GA-A----AT-A-AAAT--AG-A----ACCGAA-----G-CGC----------GAC--CG----AT--TTCCCACA-TACTTTATG--A-AA--GCTT-G-GA-C-AAAACTGAG
gi|11 : a----GAA--ATTCAACAGCGGAAAGG-T-G---TA-AGGTTG--AAACGA-CG-ACGA-T----TA-T-AGCTAATTTGGT-TTAGAATCTAAT-GGTTT-T-AGATGG-ATTTAT--T--TAAAG-ATGA-A-A-TTTTCT---GAACTGA---TTTAG--G----TA-C--AT---TTT-C-TT-GCGATT-CGCAG-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--TG-A----AAAGAA-----G-TGC----------GTC--TG----GT--TT-TCACA-
gi|12 : -T-AGCTGATTTTTG-TTAGAATTGGGT-GGTTT-T-AGTTGG-ATTTACA-T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTA-C-AA-GCGATT-CGCAT-CGCA--TAAT--AACCT--AA-A----GTAA-AAAT--CG-A----ATCGAA-----G-TGG----------GTC--GG----A---TTCCCAC---AGTTTA-GATA-AG--AGGTGG-GA-C-AGAAACGAGGGG
gi|13 : GATTTCAT-ACGAAATGGAAT-GGTTT-C-AGCTGG-ATTTAC--T--TGCGG-AGAA-ATC-ATTCCT---GGATTAA---TTTAA--G----CA-A--GT---TAA-A-GA-ACAATT-CACAT-CAAA--T-GT--AACCT--TA-A----AT-A-AAAT--CG-G----TTTGAA-----G-CGA----------GAC--TG----AT--TTTCCATA-CACCTTATG--A-AG--GCTT-G-GA-C-AGAAACGAAGGG
gi|14 : atcTGATTTAGT-GTGGAATTAAAT-G----------------TCAA--T--TTAAT-ATAA-A-A-ATCTCTCATGCATTGA---TTTAG--G------------------------GCAAGT-CATAT-AAAT--T-GC--AATCT--GA-A----TT-A-ACAT--TA-T----ACCAAA-----G-CACTACTGATACTGTCA-TT----AT--TTCTCACA-CACTTTATA--A-AG--ACTT-G-GA-C-AAAAACTTGGGGGa
gi|15 : T-G---TATGGGTTG--CAATGA-CG-ACGA-T----TA-T-AGCCGATTTTGT-TTAGATTTGGAT-GGTTT-T-AGTTGG-CTTTAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TG
gi|16 : TGATTTAGT-GAGAAATTGATT-GGTGT-C-ATTTGG-ATTTAC--T--T---------------TTA-T---GGATTGA---TTTAG--G----TA-A--GT---TTT-T-GA-ACAATT-CATAT-CAAA--T-GT--AA-CT--GA-A----GG-G-CAAC--TG-----------------G-TGC------------C--AGCAACAT--TTCCCACA-TACTTTGTA--C-TG--GCTT-T-GA-A-AGAAATGAG
gi|18 : tatTGA---TTTAG--GACCGTA-C--GTAAGTTT-T-TG-AAGATT-CACAT-CATA--T-GT--AACCT--GA-A----AC-A-AAATACCG-GTAGTATCGAA-----G-CAC----------GAT--TG----AT--TTCCCACA-TAGTTTAGG--A-AG--GCTT-G-GA-T-GGAAACGAGGGGG
gi|19 : tTA-ATTTCT---GGACTGA---TTTAG--G----TA-TTTAT---TTT-C-TA-GCGATT-TGCAT-TGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----GTCAAA-----G-TGC----------ATT--TG----AT--TTTCCACA-TACTTTATG--A-AG--GCCT-G-GA-C-AGAAACGGGGG
gi|2 : A-CTCCTC-----TTGGGGGCCT----CTAGCTAT-C
gi|20 : caatgaaaataaacaataatataatgcttttgaaaattagacataaaaaataatcatatactttacaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaagatagttgtgcttaatttcattgtaattaatttcatgaatttccgtactttaaatctaattttattttttatttagtgttattttcttttaatgcattgattccctatttgttaatttcagctgtttcctgtaatttataattttcgtaattacatgtatgtgcattcaccgaaatgcaatacatgtgacaagattgttcgatttccaagcgatttacatgcaagtaaaT-TAAGAATTGGAT-GTTTT-TTAGTTGG-ATTTAC--T--TCAAGCATGA-ATA-ATTACT---GG-CTGA--------------------------------TA-GCGATT-TGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CGAA----ATCGAA-----GTTGC----------GTC--TG----
gi|21 : CT----CTTGCTAA-CA--TT----TG-TAATTT---------AGATGA-CGCATGCG---CAA-A-AGTC-ATTG----TTTAT-CATGGAT-GC----GAA--TTT--------GAAAAGAT-G---TTTGGGTTG--AAATAA-
gi|22 : -ATTTAC--T--GCAAG-ATGA-AAG-ATTACT---GGACTGA---TTTAG--T----TA-C--AT---TAT-C-TA-G-GATT-CGCAT-CGCA--T-AT--AAACT--GA-A----AT----AAT--CA-A----ATCGAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TAgaaatgaatcttatatttt
gi|23 : ---TTT-C-TA-GCGATT-CGCAT-CGCA--T-AT--AACTT--GA-A----AT-A-AAAT--TG-A----ATCAAA-----G-TGG----------GTC--TG----AT--TTCCCACA-TACATTATG--A-AG--AACT-G-GA-C-AGAAACGAGGGGG
gi|24 : GCAT-CGCA--T-CTGAAATAT--AA-ATATAAT-A-AAAT--CG-A----ATCGAA-----G-TGC----------ATC--TG----AT--TTCCAACA-TACTTTATG--A-AG--GCGT-G-GA-C-AGAAACGAGGGGG
gi|25 : ATT-CGCATTCGCA--A-AT--AACCT--GA-------T-A-AAAT--CG-A----ATCAAA-----G-TGG----------GTC--TG----A---TTCCCATA-TAC-TTATG--A-AG--AGCT-G-GA-C-CGAAACGAAGGGG
gi|26 : G-A----ATCGA------G-TGG----------GTCACTG----AT--TTCC-ACA-TACTTTATG--A-AG--AGCT-G-GA-CGAGAAACGAGc
gi|27 : TGA-CGCATGCA---CAA-A-AGCT-ATTG----TTTAT-AAT-GAG-GC----GAG--TTTC-ACAGCGGAAAAGA
gi|28 : A-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTCATA--A-AG--AGCT-G-GA-C-AGAAACGAGGCGG
gi|30 : CCCACA-TACTTTATG--A-AG--AGCT-G-GA-C-AGAAACGAGGGGG
gi|31 : T--TTCCCACA-TACTTTATG--A-AG--ACTT-G-GA-C-AGAAACGA
gi|32 : ACA-TATTTTATG--A-AG--AGTT-A-GA-C-AGAAACGAGGGGGt
gi|4 : AGCATTTTA-CCCCTC-----TTGGGAGCCT----CTAGCTAT-CA--TC----TG-TAATTT---------AGATGA-CGCATGCG---GAA-A-AGAC-TTTGTAACTTTAT-CATGGAT-GC----GAA--TTTTAACTGAGGAAAAGAT-G---TATGGGTTG--AAATGA-CG-ACGT-T----AA-T-AGCTGATTTTGT-TTAGAATTGGAT-GGTTT-T-AGTTGG-ATTAAC--T--TCAAG-ATGA-ATA-ATTACT---GGACTGA---TTTAG--G----TA-C--AT---TTT-C-TA-GCGATT-CGCAT-TGCA--T-AT--AACCT--GA-T----AT-A-AAAT--CG-A----ATCTAA-----G-TGC----------GTC--TG----AT--TTCCCACA-TACTTTATG--A-AG--AGCT-G-GA-C-AGAAAACAGGGGG
gi|5 : GCATTTTATCCCCTC-----CC-----CCTGCACCCAG-TAT-CA--CTCTCTTGATTATTTT-------TAGGTG--CGCATGCG---CAAGA-AGAC-ATTGT---TT-AT-CATGGAT-GC----GAAAGTTTTA-CGGAGGAAA-GAT-G---CA--GGTTG--AAATGA--A-ACGA-TATTATA-T-AGAT--TTTTGT-TTAGAAT--GAT-GGTTT-T-AGTTGG-ATT-AC--T--TCAAG-ATGA-TGA-ATTACT---GGACTGA---TTTAGAAG----GATC--AT---TTT-C-TA-G-GA-T-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-G-------CG--------------------------------GTC--AT----AT--CTCCCACA-CAAATAATG--A-AG--ACGT-G-GA-C-AGAAACAAGGGG
gi|6 : GTGA-CGCCTGCG---CAA-GGAGTCGATTGT---TT-AT-CATGTATTGC----GAA--CTCGAACG-TAGAAAAGATTG---TATGG-TTGGAAAATGAACG-ACGA-T----TA-TTAGCTGATTTTCTCTTAGAACTGAAT-GGTTTCT-AGTTGG-ATTTAC--TCTTCAA--ATGATATA-AGTAATA--GGACTGAC--TTTAG--G----TA-T---T---TTT-C-TA--C-ATT-CGCAT-CGCA--T-AT--ACCCT--GA-A----AT-A-AAAT---A-A----ATCGAAGGTAGG-TGC----------G----TG----ATGAGTCCCACA-AA----ATC--A-AGATACTT-GTGA-C-AGAAACGAG
gi|7 : aATGCGATGCAA-A-AGCC-ATTGT---TG-AT-CATGAAG-GC----GAA--TTTTAACAGCGGAAAAGGT-G---TA-GGGTTG--AAATGA-CG-ACGA-T----TA-T-AGCTGATTTTGT-TTAGAATTGAAT-GGTTT-T-AGTTGG-ATTTAC--A--TCAAG-TTGA-ATA-ATTTCT---GTACTGA---TTTTG--G----TA-C--AT---TTT-C-TA-GCAAAT-CGCAT-CGCA--T-AT--AACCT--GA-A----AT-A-AAAT--CG-A----ATCGAA-----G-TGC----------GTC--TG----AT--TCCCCACA-TACTTTATG--A-AG--GCCT-G-GA-C-AGAAAGGAGGGGa
gi|8 : -A-AGCT-ATTGT---TT-AT-GATGGAG-CC----GAG--TTTGA-CAGCGGAAAAGCT-G---CATGGTTTG--AAATAG-CG-ATGA-T----TA-T-AGTCGATTTAGT-ATAAAAATGAAT-AGTTT-C-AATTGG-ATTTAG--T--TGCAG-AGAA-ATC-ACTCCT---GGGTTAA---TTCAG--G----CA-A--GT---TTA-G-AA-ACGATT-CACAT-TAAA--T-GT--AACCTGAGA-A----AT-A-AAAT--CG-A----ATCGAA-----A-CGC----------AAC--TA----AT--TTCTCGCA-TACTTTATG--A-GG--GCTT-G-GA-C-AGAAATGAGGGG
gi|9 : TTTA-CCCCTCGGGGGTCGGGGGGCT----CTAGCGAT-CA--TG----TG-TAATCTTTCAAAAATAGATTA-TGCATGCG---CAA-A-AGTC-ATTGT---TTT-T-CAac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAATGCAAAATAAACAATAATAGATAATATACTTTTGAGAATTAGACATACAAAATAATCATATATTTTACAAATAAGAAACAGATATGTATTTAATGTGCTTAATATCGTTATATAATTAATATCATGAATTTCGCGCTGAAATCTACATTTATTTTATTTAAATGTATTTCTTTAATACATCGATTCCCAATTTGTTAATTTCAGTTGCTTCCCGTAATTCCTAATTGTTCGTTATATATGTGCATTCACCGATATACTTACAGAACATGTCGTGAGAACAATGCTTGATTTCCAAGCGATTTACCGCAGTAAA
Unaligned ( gi|17 ): CGGTACCTAATTATTTTCTGTACTTTATTTCCATTGTTATTTTCTTTCAATGCATCAATTCCCAATTTATTGATTTTAGTTGCTTCCTGTAATTCATAATTTGTGCATTCAGAGAACATTATGTGCATTCATCGAAATACAATGCGTGTG
Unaligned ( gi|29 ): GAAGTGGGTCGGATTCCCACAGGTTTAGATACATGTAAGAGGTG