lowQualScore : 6666666666666666666666666666666666666666666666666 11 444444 22 33333333333333333 99999999 111111 11 3333 555555555555 11 444 1 55 1
lowQualScore : 4 6 5 5555555555555555555555555555555555555555555555555 4 55 22 0 000000 1 00 2 666666 2 6666 0 66666666666666666 8888 66666666 000000 88 6666 4 777 777 8888 4 4 111111111111 66 6 4 555 7 6 55 5 6 6
lowQualScore : . . . ................................................. . .. .. . ...... . .. . ...... . .... . ................. .... ........ ...... .. .... . ... ... .... . . ............ .. . . ... . . .. . . .
lowQualScore : 0 7 7 1111111111111111111111111111111111111111111111111 4 55 55 7 444444 8 55 4 999999 9 1111 9 00000000000000000 5555 88888888 555555 33 7777 0 000 000 5555 0 0 333333333333 77 0 0 000 0 0 00 0 0 0
consensus : NCAGTTNAG-TCCAATGAAGG-AAAT----T---------C--GNAAG-G-T------T-----A--A-A---N-TTG-AA--AGC-AGTAATTTTTTTTT-TCAAATCCAAGGGTCAA-CTAAA-T----T-TC----TATATAAGAAATCAG----T---TC-------AATATCTTGAAAAGC----ATTTAGT--GAC------ACATCAAGAATA-CTGA-A-TA-T---AGGCA---ATCTGC----A-TACAGAAA---GGC-ATT-CTTTTCAANGTTAANAGGG--CATATCTAAAAAAA--AAACAGTAATG
Reference ( gi|1 ) : ACAGTTTAG-TCCAATGAAGG-AAAT----T---------T--GTAAG-G-T------T-----A--A-A---T-TTG-AA--AGT-AGTAATTTTTTTTTTTCAAATCCAAGGGTCAA-ATAAA-T----T-TC----TGTATAAGAAATCAG----T---CA-------AATATCTTGAAAAGC----A--------GAC------ACATCAAGAATT-CTGA---CA-T---AGGCA---ATCTGC----A-TACAGAAA---AGT-ATTTCTTTTCAATATCAAAAGGGCACATTTCCAAAAAAAATAAAAAATAACGAACCCTATCTCAAATCATATAGAAAAGAAGCCTGGAAAACTGGTCATAACTTATTAAGAATT
gi|3 : CAGTTAAG-TGCAATGAAGG-TTAT----C---------TAAGTAGGTG-TA-----TCCAGAA--A-A---T------A--AGC-AGTAA------TTTTTCAAATCCAAGGG-CAACCTCAA------T-TC----TATATAACAATTAAAGCTTT---C--------AATATCTTGAAAAGC----ATTCAGT--GAA------ACA-CAAGAATA-CAGA---AATT---AAGCA---ATCTGC----ACCACA-AAA---AGTCA--GCTTTTCAATGTTAA
gi|9 : catagaaatagatttaaatacatgttgtccggtcaacatgaatattcccttgccttgTTTAGATTCAATGAAGA-AAA-----T---------T--GAAAG-GAT------T-----A--A-A---A-ATGAAA--AGCAAGTAATTTTTC-------AACCCAA-GGTCAACGTAAA-T----A-TC----TAATTAAGAATCCAG----T---
gi|6 : gtAG-TCAAATGAGGG-AAAT----T---------T--GTATT-G-T------T-----A--G-A---A-TTG-AA--AGC-AGTAATTTTT------CAAATC--------------AA-T----T-TC----TATAGAAGTAAGCAG----T---TT-------AATATCTTGAAAAGC----ACTTAGT--GAC------ACATCAAGAATA-CTGAAATTA-T---AGGCA---ATCTGC----A-TGCAtcactat
gi|14 : ctaG-TCCAATGAAGG-AAAT----C---------C--CAAAG-G-T------TG----A--A-A---T-TTG-AA--ATC-AGTAATTTTTTT-----AAATCCAAGGGCCAC-CTCCA-T----T-TC----TATATAAGAAATCAG----T---taca
gi|13 : G-TCCAATGAA-G-AAAT----TAAACTCTTGC--GTGA-----------------A--A-A---T-TTG-AA--AGC-AGTA-----TTTTTTTCAAATCCCAG---CAA-CTCAA-T----T-TC----TATATAATAAtca
gi|16 : tacG-TCCAATGAAGGCAAATCCTAT---------G--GTAAA-G-TGATACCT-----AGAA-A---A-TAG-AA--AGC-AGCAATTTT------TCAAATCAAAGGATgcagcga
gi|4 : G-AGAT----T---------C--TAAAA-G-T------T-----A--ATAGTTT-TTG-GACTAGTTAGTAATTTATTTTT--CAAATACAAGG-TCAC--TAAA-T----TGTC----TATATAAGAAATCAGTTCCT---CA-------GATATCTTTAAAAaa
gi|2 : agtaccactcaaggggga-----A--A-A---A-TTG-AA--AGC-AGTGGGTTTTTTTT----AATTGAAGGTTTAC--TGTA-T----T-TC----TGTATAGCAAATTAT----T---TC-------AATATCTTGGAGACC----ATTTATT--GAC------ACACCAAAAATA-CCGA---TA-T---AGGTA---ATTTGC----G-CTCAGAA------C-ATT--TTTTAAAGCTTGATAGG---CATATCTAAAAAAA--AAACAGTAATcatttaatatnnnnnnnnnnnnnnnnnnnnnnnnnatgacacatcaaaattactgatataaacaatcatctgcattcaagaattcagtttttcaaagttaaaaggga
gi|5 : gatgtgtcggcacgacaaaaatgttccaacctgcagtaaaatgcaactaagaagttcctacaactaaagaatacccag-----A--A-A---TATTG-AA--AGC-AGTAATATTT------CAAATTCAAGAGTCAG-TTCAA-T----T-TCTACATATACAACAAATTAG----T---TC-------AATATCTTGAAAAta
gi|7 : actagatgtgtcgacacgactcagataccctccaacccccgcctgctgaaggaagtccctaattagattaagtgatatcca--AGC-AGTAATTTTT------CAAAGGCAAGGGACAA-TTAAAAT----T-TC----TGTATATGAAATCCG----T---TC-------AATATATTGAAAAGC----ATTTAGT--GAC------ACAGCAAGAATA-CTGA---AA-T---AGGTA---ATCTGC----A-TACAAAAA---GGC-Acattta
gi|15 : ggcTTTTTCAAATCCATGGGGCAA-CTAGA-TCTTTT-TA----TTTATAGAAAATCAG----T---TC-------AATATCTTGAACAGC----ATTTAGT--GAC------ACATCAAATATA-CTGg
gi|12 : TTTTCAAATCCAAGGGTCAA-CTCGA------T-TC----TATACATGAAATCAC----TTTACAGTAATTTAATATCTTGAAAAGCATTTA--------GACTTTTGGACATCAA
gi|8 : taaCAAGAGTCAA-ATAAA-T----T-TA----TGTATAAGAAATCAG----T---TC-------AATATCTTGAAAAGG----ATTTAAT--GAC------ACATCAAGAATA-CTGATATTA-T---AAGCA---ATCTGC----A-CACAAAAA---GGC-ATTTTT
gi|10 : AAGGGTTAA-CTAAA-T----T-TC----TGTATAAGAAATCGG----T---TC-------AATATCTTGAAAAAC----ATTTTGT--GAT------GTATCAAGAATA-CTGATACTA-T---GGGCA---ATCTGC----T-TACAGAA
gi|11 : GGGTCAA-ATAAA-T----T-TC----TGTATAAGTAATCAG----T---TC-------GATATCTTGAAATGC----ATTTAGT--GAT------ACATCAAGAATA-CTAATATTA-T---AGACA---ATATGC----A-T
gi|17 : atTCTTGAAAATA----ATTTTTAGTGAA------ACATCAAGAATA-CTGT---GA-T---AGACA---ATCTGC----A-
gi|4 : --------GAC------ACATCAA-AATTACTGA---TA-T---AAACAATCATCTGC----A-TTCAAGAATTCAGT------TTTTCAAAGTTAAAAGGGatcaaaa
gi|19 : agtaccactcaagggggagagattctaaaagttaatagtttttggactagttagtaatttatttttcaaatacaaggtcactaaattgtctatataagaaatcagttcctcagatatctttaaaacatttaatatnnnnnnnnnnnnnnnnnnnnnnnnnatTCAAGAATA-CTGA---TA-TTATAGGCA---ATCTGCTGTTA-GACAGAAA---a
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): GCAAAAGGAATCGGGAATGCTATAATCGCAGTATAAGCAGGTATTATTTTCGA
Alignments
lowQualScore : 555555555555555555555555555555555 22222 22222222222222222222222222222222222 2222222222 3333333 2222 22 22
lowQualScore : 1 5 5 555555555555555555555555555555555 4 55 777 4 55 7 3 66666 1 5555 1 3333 2 33 5555 66666666666666666666666666666666666 44 2222222222 1 8888888 666 7777 3 33 1111 11 1 6 77 77 2
lowQualScore : . . . ................................. . .. ... . .. . . ..... . .... . .... . .. .... ................................... .. .......... . ....... ... .... . .. .... .. . . .. .. .
lowQualScore : 0 7 0 222222222222222222222222222222222 0 00 000 0 00 3 6 44444 1 9999 6 9999 7 77 7777 66666666666666666666666666666666666 22 9999999999 0 9999999 444 7777 6 55 3333 22 0 7 55 55 5
consensus : NCAGTTNAG-TCCAATGAAGG-AAATT---------C----GNA-AGG-T---T------AA-AN-TT---G-AA--AGC-AGTAATTTT-TTTTTTCAAATCCAAGGGTCAA-C-TAAA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGCATTT--AG----------TGACACATCAAGAATACTGA-A--T-ATAGGCA---ATCTGC----A-TACAGAAAGGCA-TTCTTTTCAANGTTAAAAGGGCACATTTCCAAAAAAAATAAANAGTAACG
Reference ( family-2062 ) : NCAGTTNAG-TCCAATGAAGG-AAATT---------C----GNA-AGG-T---T------AA-AN-TT---G-AA--AGC-AGTAATTTT-TTTTTTCAAATCCAAGGGTCAA-C-TAAA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGCATTT--AG----------TGACACATCAAGAATACTGA-A--T-ATAGGCA---ATCTGC----A-TACAGAAAGGCA-TTCTTTTCAANGTTAANAGGGCATA--TCTAAAAAAA--AAACAGTAATG
gi|1 : CAGTTTAG-TCCAATGAAGG-AAATT---------T----GTA-AGG-T---T------AA-AT-TT---G-AA--AGT-AGTAATTTTTTTTTTTCAAATCCAAGGGTCAA-A-TAAA-T--T-TCTGT--ATA----AGAAAT--------C----------AG--------------TCAAATATCTTGAAAAGCA------------------GACACATCAAGAATTCTG--A--C-ATAGGCA---ATCTGC----A-TACAGAAAAGTATTTCTTTTCAATATCAAAAGGGCACATTTCCAAAAAAAATAAAAAATAACG
gi|10 : aAAGGGTTAA-C-TAAA-T--T-TCTGT--ATA----AGAAAT--------C----------GG--------------TTCAATATCTTGAAAAACATTT--TG----------TGATGTATCAAGAATACTGATAC-T-ATGGGCA---ATCTGC----T-TACAGAAaaccctatctcaaatcatatagaaaagaagcctggaaaactggtcataacttattaagaatt
gi|11 : GGGTCAA-A-TAAA-T--T-TCTGT--ATA----AGTAAT--------C----------AG--------------TTCGATATCTTGAAATGCATTT--AG----------TGATACATCAAGAATACTAATAT-T-ATAGACA---ATATGC----A-T
gi|12 : atTTTTCAAATCCAAGGGTCAA-C-TCGA----T-TCTAT--ACA----TGAAAT--------CACTTTACAGTAA--------------TTTAATATCTTGAAAAGCATTT--AGACTTT-----TGG-ACATCAA
gi|13 : taaG-TCCAATGAA-G-AAATTAAACTCTTGC----GTG-A--------------AA-AT-TT---G-AA--AGC-AGTA----T-TTTTTTCAAATCCCAG---CAA-C-TCAA-T--T-TCTAT--ATA----ATAA
gi|14 : tacG-TCCAATGAAGG-AAATC---------C----CAA-AGG-T---TG-----AA-AT-TT---G-AA--ATC-AGTAATTTT-TTT----AAATCCAAGGGCCAC-C-TCCA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAgcagcga
gi|15 : TTTTTCAAATCCATGGGGCAA-C-TAGA-TCTT-TTTATTTATA----GAAAAT--------C----------AG--------------TTCAATATCTTGAACAGCATTT--AG----------TGACACATCAAATATACTG
gi|16 : G-TCCAATGAAGGCAAATC---------CTATGGTA-AAG-TGA-TACCTAGAA-AA-TA---G-AA--AGC-AGCAA------TTTTTCAAATCAAAGGAT
gi|17 : TCTTGAAAATAATTTTTAG----------TGAAACATCAAGAATACTG-----TGATAGACA---ATCTGC----A-aa
gi|19 : TCAAGAATACTGATA--TTATAGGCA---ATCTGCTGTTA-GACAGAAAatcaaaa
gi|2 : ------AA-AA-TT---G-AA--AGC-AGTGGGTTT-TTTTT---AATTGAAGGTTTA--C-TGTA-T--T-TCTGT--ATA----GCAAAT--------T----------AT--------------TTCAATATCTTGGAGACCATTT--AT----------TGACACACCAAAAATACCG--A--T-ATAGGTA---ATTTGC----G-CTCAGAA---CA-TT-TTTTAAAGCTTGATA-GGCATA--TCTAAAAAAA--AAACAGTAATG
gi|3 : gatgtgtcggcacgacaaaaatgttccaacctgcagtaaaatgcaactaagaagttcctacaactaaagaatacccagCAGTTAAG-TGCAATGAAGG-TTATC---------T----AAGTAGG-TGTATCCAG--AA-AA-T-------A--AGC-AGTAATTTT-T-----CAAATCCAAGGG-CAACC-TCAA----T-TCTAT--ATA----ACAATT--------A----------AAGCT-----------TTCAATATCTTGAAAAGCATTC--AG----------TGAAACA-CAAGAATACAGA-A--A-TTAAGCA---ATCTGC----ACCACAAAAAGTCA--GCTTTTCAATGTTAAta
gi|4 : catagaaatagatttaaatacatgttgtccggtcaacatgaatattcccttgccttgG-AGATT---------C----TAA-AAG-T---T------AATAG-TTTTTG-GACTAGTTAGTAATTTA-TTTTT-CAAATACAAGG-TCA--C-TAAA-T--TGTCTAT--ATA----AGAAATCAGTTCCTC----------AGATATCTTTAAAACATTTAATATNNNNNNNNNNNNNN--NNNNNNNNNNNATGACACATCAAAATTACTG--A--T-ATAAACAATCATCTGC----A-TTCAAGAATTCA-GT-TTTTCAAAGTTAAAAGGG
gi|5 : agtaccactcaaggggga------AA-ATATT---G-AA--AGC-AGTAATATT-T-----CAAATTCAAGAGTCAG-T-TCAA-T--T-TCTAC--ATATACAACAAAT--------T----------AG--------------TTCAATATCTTGAAAA-CATTT--Aa
gi|6 : actagatgtgtcgacacgactcagataccctccaacccccgcctgctgaaggaagtccctaattagattaagtgatatccaTAAG-TCAAATGAGGG-AAATT---------T----GTA-TTG-T---T------AG-AA-TT---G-AA--AGC-AGTAATTTT-T-----CAAATC---------------AA-T--T-TCTAT--AGA----AGTAAG--------C----------AG--------------TTTAATATCTTGAAAAGCACTT--AG----------TGACACATCAAGAATACTGA-AATT-ATAGGCA---ATCTGC----A-TGCA
gi|7 : c--AGC-AGTAATTTT-T-----CAAAGGCAAGGGACAA-T-TAAAAT--T-TCTGT--ATA----TGAAAT--------C----------CG--------------TTCAATATATTGAAAAGCATTT--AG----------TGACACAGCAAGAATACTGA-A----ATAGGTA---ATCTGC----A-TACAAAAAGGCA-taca
gi|8 : ggcCAAGAGTCAA-A-TAAA-T--T-TATGT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGGATTT--AA----------TGACACATCAAGAATACTGATAT-T-ATAAGCA---ATCTGC----A-CACAAAAAGGCA-TTTTTg
gi|9 : TTTAGATTCAATGAAGA-AAATT--------------GAA-AGGAT---T------AA-AA-AT---GAAA--AGCAAGTAATTTT-TC------AACCCAA-GGTCAA-CGTAAA-T--A-TCTAA--TTA----AGAATC--------C----------AG--------------TTCACTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GCAAAAGGAATCGGGAATGCTATAATCGCAGTATAAGCAGGTATTATTTTCGA
Alignments
lowQualScore : 555555555555555555555555555555555 22222 22222222222222222222222222222222222 2222222222 3333333 2222 111 11
lowQualScore : 1 5 5 555555555555555555555555555555555 4 55 777 4 55 7 3 66666 1 555 1 2 33 2 33 5555 66666666666666666666666666666666666 44 2222222222 1 8888888 666 7777 3 33 1111 11 222 4 88 1
lowQualScore : . . . ................................. . .. ... . .. . . ..... . ... . . .. . .. .... ................................... .. .......... . ....... ... .... . .. .... .. ... . .. .
lowQualScore : 0 7 0 222222222222222222222222222222222 0 00 000 0 00 3 6 44444 1 999 6 7 77 7 77 7777 66666666666666666666666666666666666 22 9999999999 0 9999999 444 7777 6 55 3333 22 222 0 55 0
consensus : NCAGTTNAG-TCCAATGAAGG-AAATT---------C----GNA-AGG-T---T------AA-AN-TT---G-AA--AGC-AGTAATTTT-TTTTTTCAAATCCAAGGGTCAAC-TAAA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGCATTT--AG----------TGACACATCAAGAATACTGA-A--T-ATAGGCAATC---TGC----A-TACAGAAAGGCA-TTCTTTTCAANGTTAAAAGGGCACATNTCCAAAAAAAATAAANAGTAACG
Reference ( family-2062 ) : NCAGTTNAG-TCCAATGAAGG-AAATT---------C----GNA-AGG-T---T------AA-AN-TT---G-AA--AGC-AGTAATTTT-TTTTTTCAAATCCAAGGGTCAAC-TAAA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGCATTT--AG----------TGACACATCAAGAATACTGA-A--T-ATAGGCAATC---TGC----A-TACAGAAAGGCA-TTCTTTTCAANGTTAAAAGGGCACATTTCCAAAAAAAATAAANAGTAACG
gi|1 : CAGTTTAG-TCCAATGAAGG-AAATT---------T----GTA-AGG-T---T------AA-AT-TT---G-AA--AGT-AGTAATTTTTTTTTTTCAAATCCAAGGGTCAAA-TAAA-T--T-TCTGT--ATA----AGAAAT--------C----------AG--------------TCAAATATCTTGAAAAGCA------------------GACACATCAAGAATTCTG--A--C-ATAGGCAATC---TGC----A-TACAGAAAAGTATTTCTTTTCAATATCAAAAGGGCACATTTCCAAAAAAAATAAAAAATAACG
gi|10 : aAAGGGTTAAC-TAAA-T--T-TCTGT--ATA----AGAAAT--------C----------GG--------------TTCAATATCTTGAAAAACATTT--TG----------TGATGTATCAAGAATACTGATAC-T-ATGGGCAATC---TGC----T-TACAGAAaaccctatctcaaatcatatagaaaagaagcctggaaaactggtcataacttattaagaatt
gi|11 : GGGTCAAA-TAAA-T--T-TCTGT--ATA----AGTAAT--------C----------AG--------------TTCGATATCTTGAAATGCATTT--AG----------TGATACATCAAGAATACTAATAT-T-ATAGACAATA---TGC----A-T
gi|12 : atTTTTCAAATCCAAGGGTCAAC-TCGA----T-TCTAT--ACA----TGAAAT--------CACTTTACAGTAA--------------TTTAATATCTTGAAAAGCATTT--AGACTTT-----TGG-ACATCAA
gi|13 : taaG-TCCAATGAAG--AAATTAAACTCTTGC----GTG-A--------------AA-AT-TT---G-AA--AGC-AGTA----T-TTTTTTCAAATCCCAG---CAAC-TCAA-T--T-TCTAT--ATA----ATAA
gi|14 : tacG-TCCAATGAAGG-AAATC---------C----CAA-AGG-T---TG-----AA-AT-TT---G-AA--ATC-AGTAATTTT-TTT----AAATCCAAGGGCCACC-TCCA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAgcagcga
gi|15 : TTTTTCAAATCCATGGGGCAAC-TAGA-TCTT-TTTATTTATA----GAAAAT--------C----------AG--------------TTCAATATCTTGAACAGCATTT--AG----------TGACACATCAAATATACTG
gi|16 : G-TCCAATGAAGGCAAATC---------CTATGGTA-AAG-TGA-TACCTAGAA-AA-TA---G-AA--AGC-AGCAA------TTTTTCAAATCAAAGGAT
gi|17 : TCTTGAAAATAATTTTTAG----------TGAAACATCAAGAATACTG-----TGATAGACAATC---TGC----A-aa
gi|19 : TCAAGAATACTGATA--TTATAGGCAATC---TGCTGTTA-GACAGAAAatcaaaa
gi|2 : ------AA-AA-TT---G-AA--AGC-AGTGGGTTT-TTTTT---AATTGAAGGTTTA-C-TGTA-T--T-TCTGT--ATA----GCAAAT--------T----------AT--------------TTCAATATCTTGGAGACCATTT--AT----------TGACACACCAAAAATACCG--A--T-ATAGGTAATT---TGC----G-CTCAGAA---CA-TT-TTTTAAAGCTTGATAGG---CATATCTAAAAAAA--AAACAGTAATG
gi|3 : gatgtgtcggcacgacaaaaatgttccaacctgcagtaaaatgcaactaagaagttcctacaactaaagaatacccagCAGTTAAG-TGCAATGAAGG-TTATC---------T----AAGTAGG-TGTATCCAG--AA-AA-T-------A--AGC-AGTAATTTT-T-----CAAATCCAAGGG-CAACCTCAA-T--T--CTAT--ATA----ACAATT--------A----------AAGCT-----------TTCAATATCTTGAAAAGCATTC--AG----------TGAAACA-CAAGAATACAGA-A--A-TTAAGCAATC---TGC----ACCACAAAAAGTCA--GCTTTTCAATGTTAAta
gi|4 : catagaaatagatttaaatacatgttgtccggtcaacatgaatattcccttgccttgG-AGATT---------C----TAA-AAG-T---T------AATAG-TTTTTG-GACTAGTTAGTAATTTA-TTTTT-CAAATACAAGG-TCA-C-TAAA-T--TGTCTAT--ATA----AGAAATCAGTTCCTC----------AGATATCTTTAAAACATTTAATATNNNNNNNNNNNNNN--NNNNNNNNNNNATGACACATCAAAATTACTGA----T-ATAAACAATCATCTGC----A-TTCAAGAATTCA-GT-TTTTCAAAGTTAAAAGGG
gi|5 : agtaccactcaaggggga------AA-ATATT---G-AA--AGC-AGTAATATT-T-----CAAATTCAAGAGTCAGT-TCAA-T--T-TCTAC--ATATACAACAAAT--------T----------AG--------------TTCAATATCTTGAAAA-CATTT--Aa
gi|6 : actagatgtgtcgacacgactcagataccctccaacccccgcctgctgaaggaagtccctaattagattaagtgatatccaTAAG-TCAAATGAGGG-AAATT---------T----GTA-TTG-T---T------AG-AA-TT---G-AA--AGC-AGTAATTTT-T-----CAAATC--------------AA-T--T-TCTAT--AGA----AGTAAG--------C----------AG--------------TTTAATATCTTGAAAAGCACTT--AG----------TGACACATCAAGAATACTGA-AATT-ATAGGCAATC---TGC----A-TGCA
gi|7 : c--AGC-AGTAATTTT-T-----CAAAGGCAAGGGACAAT-TAAAAT--T-TCTGT--ATA----TGAAAT--------C----------CG--------------TTCAATATATTGAAAAGCATTT--AG----------TGACACAGCAAGAATACTGA-A----ATAGGTAATC---TGC----A-TACAAAAAGGCA-taca
gi|8 : ggcCAAGAGTCAAA-TAAA-T--T-TATGT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGGATTT--AA----------TGACACATCAAGAATACTGATAT-T-ATAAGCAATC---TGC----A-CACAAAAAGGCA-TTTTTg
gi|9 : TTTAGATTCAATGAAGA-AAATT--------------GAA-AGGAT---T------AA-AA-AT---GAAA--AGCAAGTAATTTT-TC------AACCCAA-GGTCAACGTAAA-T--A-TCTAA--TTA----AGAATC--------C----------AG--------------TTCACTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GCAAAAGGAATCGGGAATGCTATAATCGCAGTATAAGCAGGTATTATTTTCGA
Alignments
lowQualScore : 555555555555555555555555555555555 22222 22222222222222222222222222222222222 2222222222 3333333 2222 111 11
lowQualScore : 1 5 5 555555555555555555555555555555555 4 55 777 4 55 7 3 66666 1 555 1 2 33 2 33 5555 66666666666666666666666666666666666 44 2222222222 1 8888888 666 7777 3 33 1111 11 222 1 88 1
lowQualScore : . . . ................................. . .. ... . .. . . ..... . ... . . .. . .. .... ................................... .. .......... . ....... ... .... . .. .... .. ... . .. .
lowQualScore : 0 7 0 222222222222222222222222222222222 0 00 000 0 00 3 6 44444 1 999 6 7 77 7 77 7777 66666666666666666666666666666666666 22 9999999999 0 9999999 444 7777 6 55 3333 22 222 0 55 0
consensus : NCAGTTNAG-TCCAATGAAGG-AAATT---------C----GNA-AGG-T---T------AA-AN-TT---G-AA--AGC-AGTAATTTT-TTTTTTCAAATCCAAGGGTCAAC-TAAA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGCATTT--AG----------TGACACATCAAGAATACTGA-A--T-ATAGGCAATC---TGC----A-TACAGAAAGGCA-TTCTTTTCAANGTTAAAAGGGCACATNTCCAAAAAAAATAAANAGTAACG
Reference ( family-2062 ) : NCAGTTNAG-TCCAATGAAGG-AAATT---------C----GNA-AGG-T---T------AA-AN-TT---G-AA--AGC-AGTAATTTT-TTTTTTCAAATCCAAGGGTCAAC-TAAA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGCATTT--AG----------TGACACATCAAGAATACTGA-A--T-ATAGGCAATC---TGC----A-TACAGAAAGGCA-TTCTTTTCAANGTTAAAAGGGCACATNTCCAAAAAAAATAAANAGTAACG
gi|1 : CAGTTTAG-TCCAATGAAGG-AAATT---------T----GTA-AGG-T---T------AA-AT-TT---G-AA--AGT-AGTAATTTTTTTTTTTCAAATCCAAGGGTCAAA-TAAA-T--T-TCTGT--ATA----AGAAAT--------C----------AG--------------TCAAATATCTTGAAAAGCA------------------GACACATCAAGAATTCTG--A--C-ATAGGCAATC---TGC----A-TACAGAAAAGTATTTCTTTTCAATATCAAAAGGGCACATTTCCAAAAAAAATAAAAAATAACG
gi|10 : aAAGGGTTAAC-TAAA-T--T-TCTGT--ATA----AGAAAT--------C----------GG--------------TTCAATATCTTGAAAAACATTT--TG----------TGATGTATCAAGAATACTGATAC-T-ATGGGCAATC---TGC----T-TACAGAAaaccctatctcaaatcatatagaaaagaagcctggaaaactggtcataacttattaagaatt
gi|11 : GGGTCAAA-TAAA-T--T-TCTGT--ATA----AGTAAT--------C----------AG--------------TTCGATATCTTGAAATGCATTT--AG----------TGATACATCAAGAATACTAATAT-T-ATAGACAATA---TGC----A-T
gi|12 : atTTTTCAAATCCAAGGGTCAAC-TCGA----T-TCTAT--ACA----TGAAAT--------CACTTTACAGTAA--------------TTTAATATCTTGAAAAGCATTT--AGACTTT-----TGG-ACATCAA
gi|13 : taaG-TCCAATGAAG--AAATTAAACTCTTGC----GTG-A--------------AA-AT-TT---G-AA--AGC-AGTA----T-TTTTTTCAAATCCCAG---CAAC-TCAA-T--T-TCTAT--ATA----ATAA
gi|14 : tacG-TCCAATGAAGG-AAATC---------C----CAA-AGG-T---TG-----AA-AT-TT---G-AA--ATC-AGTAATTTT-TTT----AAATCCAAGGGCCACC-TCCA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAgcagcga
gi|15 : TTTTTCAAATCCATGGGGCAAC-TAGA-TCTT-TTTATTTATA----GAAAAT--------C----------AG--------------TTCAATATCTTGAACAGCATTT--AG----------TGACACATCAAATATACTG
gi|16 : G-TCCAATGAAGGCAAATC---------CTATGGTA-AAG-TGA-TACCTAGAA-AA-TA---G-AA--AGC-AGCAA------TTTTTCAAATCAAAGGAT
gi|17 : TCTTGAAAATAATTTTTAG----------TGAAACATCAAGAATACTG-----TGATAGACAATC---TGC----A-aa
gi|19 : TCAAGAATACTGATA--TTATAGGCAATC---TGCTGTTA-GACAGAAAatcaaaa
gi|2 : ------AA-AA-TT---G-AA--AGC-AGTGGGTTT-TTTTT---AATTGAAGGTTTA-C-TGTA-T--T-TCTGT--ATA----GCAAAT--------T----------AT--------------TTCAATATCTTGGAGACCATTT--AT----------TGACACACCAAAAATACCG--A--T-ATAGGTAATT---TGC----G-CTCAGAA---CA-TT-TTTTAAAGCTTGATAGG---CATATCTAAAAAAA--AAACAGTAATG
gi|3 : gatgtgtcggcacgacaaaaatgttccaacctgcagtaaaatgcaactaagaagttcctacaactaaagaatacccagCAGTTAAG-TGCAATGAAGG-TTATC---------T----AAGTAGG-TGTATCCAG--AA-AA-T-------A--AGC-AGTAATTTT-T-----CAAATCCAAGGG-CAACCTCAA-T--T--CTAT--ATA----ACAATT--------A----------AAGCT-----------TTCAATATCTTGAAAAGCATTC--AG----------TGAAACA-CAAGAATACAGA-A--A-TTAAGCAATC---TGC----ACCACAAAAAGTCA--GCTTTTCAATGTTAAta
gi|4 : catagaaatagatttaaatacatgttgtccggtcaacatgaatattcccttgccttgG-AGATT---------C----TAA-AAG-T---T------AATAG-TTTTTG-GACTAGTTAGTAATTTA-TTTTT-CAAATACAAGG-TCA-C-TAAA-T--TGTCTAT--ATA----AGAAATCAGTTCCTC----------AGATATCTTTAAAACATTTAATATNNNNNNNNNNNNNN--NNNNNNNNNNNATGACACATCAAAATTACTGA----T-ATAAACAATCATCTGC----A-TTCAAGAATTCA-GT-TTTTCAAAGTTAAAAGGG
gi|5 : agtaccactcaaggggga------AA-ATATT---G-AA--AGC-AGTAATATT-T-----CAAATTCAAGAGTCAGT-TCAA-T--T-TCTAC--ATATACAACAAAT--------T----------AG--------------TTCAATATCTTGAAAA-CATTT--Aa
gi|6 : actagatgtgtcgacacgactcagataccctccaacccccgcctgctgaaggaagtccctaattagattaagtgatatccaTAAG-TCAAATGAGGG-AAATT---------T----GTA-TTG-T---T------AG-AA-TT---G-AA--AGC-AGTAATTTT-T-----CAAATC--------------AA-T--T-TCTAT--AGA----AGTAAG--------C----------AG--------------TTTAATATCTTGAAAAGCACTT--AG----------TGACACATCAAGAATACTGA-AATT-ATAGGCAATC---TGC----A-TGCA
gi|7 : c--AGC-AGTAATTTT-T-----CAAAGGCAAGGGACAAT-TAAAAT--T-TCTGT--ATA----TGAAAT--------C----------CG--------------TTCAATATATTGAAAAGCATTT--AG----------TGACACAGCAAGAATACTGA-A----ATAGGTAATC---TGC----A-TACAAAAAGGCA-taca
gi|8 : ggcCAAGAGTCAAA-TAAA-T--T-TATGT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGGATTT--AA----------TGACACATCAAGAATACTGATAT-T-ATAAGCAATC---TGC----A-CACAAAAAGGCA-TTTTTg
gi|9 : TTTAGATTCAATGAAGA-AAATT--------------GAA-AGGAT---T------AA-AA-AT---GAAA--AGCAAGTAATTTT-TC------AACCCAA-GGTCAACGTAAA-T--A-TCTAA--TTA----AGAATC--------C----------AG--------------TTCACTAT
blockSeqs : A A C CTATGGTAAAGTGATACCTAG T TA TTT A CT T . TTTTT T ACC A A CT G TT TACA CAGTTCCTCAGATATCTTTAAAACA TT NNNNNNNNNA T ATACT ATC TGTT C GT TTT GC . A . C
blockSeqs : A . . TAAGTAGGTGTATCCAG . T . . . A . TTTTT T ACG A . . . . . CACTTTACAGTAA . ACTTT T ATATT . . . TT TT TG
blockSeqs : T . . AAACTCTTGCGTGA . T . . . . . TTTTT T AC C . . . . . AAAGCT . . C ATATT . . . GG GC AG
blockSeqs : . . CCAAAGGTTG . A . . . . . TTTT C AA C . . . . . CGG . . A AAATT . . . GG GT
blockSeqs : . . CTAAAAGTT . A . . . . . TTTT G AC C . . . . . CAG . . C ATATT . . . .
blockSeqs : . . TGTATTGTT . A . . . . . TT T AC A . . . . . CAG . . A AAA . . .
blockSeqs : . GAAAGGATT . G . . . . . C T CC G . . . . . CAG . . C TG . . .
blockSeqs : . A . . . . . . T AC C . . . . . TAT . . C AT . . .
blockSeqs : . A . . . . . . T GT A . . . . . TAG . . C AT . . .
blockSeqs : . . . . A AT C . . . . . CAG . . C AA . . .
blockSeqs : . T AA A . . . . . CCG . . .
blockSeqs : T C A . . . . . CAG .
blockSeqs : . C A . . . . . CAG
blockSeqs : . . . . . . . .
blockSeqs : .
blockSeqCons : TTTT* AATT*** GT**
originalCons : NCAGTTNAG-TCCAATGAAGG-AAATT---------C----GNA-AGG-T---T------AA-AN-TT---G-AA--AGC-AGTAATTTT-TTTTTTCAAATCCAAGGGTCAAC-TAAA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGCATTT--AG----------TGACACATCAAGAATACTGA-A--T-ATAGGCAATC---TGC----A-TACAGAAAGGCA-TTCTTTTCAANGTTAAAAGGGCACATNTCCAAAAAAAATAAANAGTAACG
finalCons : NCAGTTNAG-TCCAATGAAGG-AAATT---------C----GNA-AGG-T---T------AA-AN-TT---G-AA--AGC-AGTAATTTT-TTTTT-CAAATCCAAGGGTCAAC-TAAA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGCATTT--AG----------TGACACATCAAGAATACTGAATT---ATAGGCAATC---TGC----A-TACAGAAAGGCAGT--TTTTCAANGTTAAAAGGGCACATNTCCAAAAAAAATAAANAGTAACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GCAAAAGGAATCGGGAATGCTATAATCGCAGTATAAGCAGGTATTATTTTCGA
Alignments
lowQualScore : 5555555555555555555555555555555555 1111 22222222222222222222222222222222222 2222222222 222 11 111 11
lowQualScore : 1 5 5 1111111111111111111111111111111111 55 4 55 777 4 55 7 44 5555 1 555 1 2 33 2 33 5555 66666666666666666666666666666666666 44 2222222222 1 3 666 666 7777 3 33 2 11 11 222 1 88 1
lowQualScore : . . . .................................. .. . .. ... . .. . .. .... . ... . . .. . .. .... ................................... .. .......... . . ... ... .... . .. . .. .. ... . .. .
lowQualScore : 0 7 0 2222222222222222222222222222222222 55 0 00 000 0 00 3 66 5555 1 999 6 7 77 7 77 7777 66666666666666666666666666666666666 22 9999999999 0 3 888 444 7777 6 55 5 00 22 222 0 55 0
consensus : NCAGTTNAG-TCCAATGAAGG-AAATT---------C----GNA-AGG-T------T----A--A-AN-TT---G-AA--AGC-AGTAATTTT--TTTTTCAAATCCAAGGGTCAAC-TAAA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGCATTT--AG----------TGACACATCAAGAATACTG-A-ATTATAGGCAATC---TGC----A-TACAGAAAGGCANT--TTTTCAANGTTAAAAGGGCACATNTCCAAAAAAAATAAANAGTAACG
Reference ( family-2062 ) : NCAGTTNAG-TCCAATGAAGG-AAATT---------C----GNA-AGG-T------T----A--A-AN-TT---G-AA--AGC-AGTAATTTT--TTTTTCAAATCCAAGGGTCAAC-TAAA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGCATTT--AG----------TGACACATCAAGAATACTG-A-ATTATAGGCAATC---TGC----A-TACAGAAAGGCAGT--TTTTCAANGTTAAAAGGGCACATNTCCAAAAAAAATAAANAGTAACG
gi|1 : CAGTTTAG-TCCAATGAAGG-AAATT---------T----GTA-AGG-T------T----A--A-AT-TT---G-AA--AGT-AGTAATTTTTTTTTTTCAAATCCAAGGGTCAAA-TAAA-T--T-TCTGT--ATA----AGAAAT--------C----------AG--------------TCAAATATCTTGAAAAGCA------------------GACACATCAAGAATTCTG-A---CATAGGCAATC---TGC----A-TACAGAAAAGTATTTCTTTTCAATATCAAAAGGGCACATTTCCAAAAAAAATAAAAAATAACG
gi|10 : aAAGGGTTAAC-TAAA-T--T-TCTGT--ATA----AGAAAT--------C----------GG--------------TTCAATATCTTGAAAAACATTT--TG----------TGATGTATCAAGAATACTG-ATACTATGGGCAATC---TGC----T-TACAGAAaaccctatctcaaatcatatagaaaagaagcctggaaaactggtcataacttattaagaatt
gi|11 : GGGTCAAA-TAAA-T--T-TCTGT--ATA----AGTAAT--------C----------AG--------------TTCGATATCTTGAAATGCATTT--AG----------TGATACATCAAGAATACTA-ATATTATAGACAATA---TGC----A-T
gi|12 : atTTTTCAAATCCAAGGGTCAAC-TCGA----T-TCTAT--ACA----TGAAAT--------CACTTTACAGTAA--------------TTTAATATCTTGAAAAGCATTT--AGACTTT-----TGG-ACATCAA
gi|13 : taaG-TCCAATGAAG--AAATTAAACTCTTGC----GTG-A---------------A--A-AT-TT---G-AA--AGC-AGTA---TT--TTTTTCAAATCCCAG---CAAC-TCAA-T--T-TCTAT--ATA----ATAA
gi|14 : tacG-TCCAATGAAGG-AAATC---------C----CAA-AGG-T------TG---A--A-AT-TT---G-AA--ATC-AGTAATTTT--TTT---AAATCCAAGGGCCACC-TCCA-T--T-TCTAT--ATA----AGAAAT--------C----------AG--------------TTCAgcagcga
gi|15 : --TTTTTCAAATCCATGGGGCAAC-TAGA-TCTT-TTTATTTATA----GAAAAT--------C----------AG--------------TTCAATATCTTGAACAGCATTT--AG----------TGACACATCAAATATACTG-
gi|16 : G-TCCAATGAAGGCAAATC---------CTATGGTA-AAG-TGATACCT----AGAA-AA-TA---G-AA--AGC-AGCAA------TTTTTCAAATCAAAGGAT
gi|17 : TCTTGAAAATAATTTTTAG----------TGAAACATCAAGAATACTG----TGATAGACAATC---TGC----A-aa
gi|19 : TCAAGAATACTG-ATATTATAGGCAATC---TGCTGTTA-GACAGAAAatcaaaa
gi|2 : ----A--A-AA-TT---G-AA--AGC-AGTGGGTTT--TTTTT--AATTGAAGGTTTA-C-TGTA-T--T-TCTGT--ATA----GCAAAT--------T----------AT--------------TTCAATATCTTGGAGACCATTT--AT----------TGACACACCAAAAATACCG-A---TATAGGTAATT---TGC----G-CTCAGAA---CATT--TTTTAAAGCTTGATAGG---CATATCTAAAAAAA--AAACAGTAATG
gi|3 : gatgtgtcggcacgacaaaaatgttccaacctgcagtaaaatgcaactaagaagttcctacaactaaagaatacccagCAGTTAAG-TGCAATGAAGG-TTATC---------T----AAGTAGG-TGTA---TCCAGA--A-AA-T-------A--AGC-AGTAATTTT--T----CAAATCCAAGGG-CAACCTCAA-T--T--CTAT--ATA----ACAATT--------A----------AAGCT-----------TTCAATATCTTGAAAAGCATTC--AG----------TGAAACA-CAAGAATACAG-A-AAT-TAAGCAATC---TGC----ACCACAAAAAGTCAGC--TTTTCAATGTTAAta
gi|4 : catagaaatagatttaaatacatgttgtccggtcaacatgaatattcccttgccttgG-AGATT---------C----TAA-AAG-T------T----A--ATAG-TTTTTG-GACTAGTTAGTAATTTA--TTTTTCAAATACAAGG-TCA-C-TAAA-T--TGTCTAT--ATA----AGAAATCAGTTCCTC----------AGATATCTTTAAAACATTTAATATNNNNNNNNNNNNNN--NNNNNNNNNNNATGACACATCAAAATTACTG-A---TATAAACAATCATCTGC----A-TTCAAGAATTCAGT--TTTTCAAAGTTAAAAGGG
gi|5 : agtaccactcaaggggga----A--A-ATATT---G-AA--AGC-AGTAATATT--T----CAAATTCAAGAGTCAGT-TCAA-T--T-TCTAC--ATATACAACAAAT--------T----------AG--------------TTCAATATCTTGAAAA-CATTT--Aa
gi|6 : actagatgtgtcgacacgactcagataccctccaacccccgcctgctgaaggaagtccctaattagattaagtgatatccaTAAG-TCAAATGAGGG-AAATT---------T----GTA-TTG-T------T----A--G-AA-TT---G-AA--AGC-AGTAATTTT--T----CAAATC--------------AA-T--T-TCTAT--AGA----AGTAAG--------C----------AG--------------TTTAATATCTTGAAAAGCACTT--AG----------TGACACATCAAGAATACTGAA-ATTATAGGCAATC---TGC----A-TGCA
gi|7 : c--AGC-AGTAATTTT--T----CAAAGGCAAGGGACAAT-TAAAAT--T-TCTGT--ATA----TGAAAT--------C----------CG--------------TTCAATATATTGAAAAGCATTT--AG----------TGACACAGCAAGAATACTG-A-A--ATAGGTAATC---TGC----A-TACAAAAAGGCAGtaca
gi|8 : ggcCAAGAGTCAAA-TAAA-T--T-TATGT--ATA----AGAAAT--------C----------AG--------------TTCAATATCTTGAAAAGGATTT--AA----------TGACACATCAAGAATACTG-ATATTATAAGCAATC---TGC----A-CACAAAAAGGCATT--TTT
gi|9 : TTTAGATTCAATGAAGA-AAATT--------------GAA-AGGAT------T----A--A-AA-AT---GAAA--AGCAAGTAATTTT--TC-----AACCCAA-GGTCAACGTAAA-T--A-TCTAA--TTA----AGAATC--------C----------AG--------------TTCACTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GCAAAAGGAATCGGGAATGCTATAATCGCAGTATAAGCAGGTATTATTTTCGA