lowQualScore : 111111111111111111 11111111111111111111
lowQualScore : 1 111 1 1 1111111111 1111 333 11 222 1111 1 1 111 3333 1 111 88888888888888 1 555555555555555555 1 33333333 1 666666666666666666 11 4 222222 33333 1 111 2 22222 1 1 11 1 1 1 222 1 222 333333333333333 11111 1 1 33333333 3333 1 111 99999999999999999999 1 33 3333 33 33333333 1 111 4 11 33 22 11 2 333333 2 77777777777777777 222 33 1111111111 1 1 111 111 1 99999999999999999999999999999999999 1111 11 1111 22 444444444444444 11111 1 11 77777777777777777777777777777777777777777 111 1111111 111111 1
lowQualScore : 5 6 444 6 3 8888888888 99 6 5555 8 8 8 000 3 11 8 222 7 0000 3 3 777 3333 3 777 11111111111111 3 888888888888888888 7 2 66666666 3 666666666666666666 88 0 6 999999 33333 7 0 777 1 3 3 44444 0 0 3 33 3 0 0 7 3 6 9 555 3 333 777777777777777 77777 0 0 44444444 2 8888 3 0 0 000 66666666666666666666 3 7 00 0 0000 00 88888 33333333 5 4 777 2 0 88 3 55 22 88 0 111111 3 0 55555555555555555 222 11 7 5555555555 6 6 3 3 6 3 777 111 3 6 99999999999999999999999999999999999 7777 11 7777 11 8 111111111111111 8 2 88888 6 3 1 5 6666 33 5 66666666666666666666666666666666666666666 000 77 7777777 5 111111 5 66 99 8 8 8 6
lowQualScore : . . ... . . .......... .. . .... . . . ... . .. . ... . .... . . ... .... . ... .............. . .................. . . ........ . .................. .. . . ...... ..... . . ... . . . ..... . . . .. . . . . . . . ... . ... ............... ..... . . ........ . .... . . . ... .................... . . .. . .... .. ..... ........ . . ... . . .. . .. .. .. . ...... . . ................. ... .. . .......... . . . . . . ... ... . . ................................... .... .. .... .. . ............... . . ..... . . . . .... .. . ......................................... ... .. ....... . ...... . .. .. . . . .
lowQualScore : 0 0 000 0 3 7777777777 22 7 7777 0 0 0 000 2 00 0 000 3 7777 3 3 777 3333 3 777 00000000000000 3 000000000000000000 3 0 33333333 3 000000000000000000 33 0 7 777777 33333 3 0 555 2 2 2 55555 0 0 2 88 2 0 0 3 3 7 7 777 3 333 777777777777777 77777 0 0 88888888 5 5555 2 2 0 888 00000000000000000000 3 3 33 7 0000 33 77777 00000000 5 0 000 5 0 00 0 00 55 00 0 000000 0 0 55555555555555555 000 77 0 6666666666 7 7 2 3 7 3 777 777 3 7 00000000000000000000000000000000000 0000 00 0000 44 0 222222222222222 0 5 33333 7 3 9 7 6666 66 7 66666666666666666666666666666666666666666 000 44 1111111 7 777777 7 77 22 0 0 0 2
consensus : TCTCTCTCTCTCTC---TCTCTCTGAAAT-AA--A---GG--AT--AAG-GAA-TAAAAAGTTG-CTT-T-AAAAA--TCACCCT--CA-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CAGA--TATT-ACGC-A-AAATTAT-CTG-C--------AATATCTAT-GTACAT--AAGCT--------AGTAAATTTTTCCACGAT-T-A--T-AATGAGAAA-TTA-TTCGATG-CTTTC----AAAC--AAAGCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTT-CACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTGTCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-GAT-GACCCCATAT-ATGTAGTGAGAA-AGAT-TTT-GAATAT-TTTGGCAAA--A-TTAGCA-TT-TAATTTGGGCGCGGG--------TNNGGGCT-TGTCAAGA--AATTTAGTAAAC---GAACTACGACCCCC-CCCCC--AC----TTTAAGAATCAGNGCCNGCNTGCCTGAAATCTTTCTTCCTCTCCNTGTGGCNCGTTCGTATAAGTCTATATAAANCAATGGCTGAGT-TAAGTCGCCGCGGTGAGN--AAACTGTG-ATTATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAG------------C--TTT--------G--------TAT----AG--GT----ATACCGCA-TGGA-TGC---AG-T---CA-CAGAC-G--CC-AGG-AAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTT-ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTNTTATA-AAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
Reference ( gi|2 ) : TCTCTCTC-CTCTC---TCT-TCTGAAAT-AA--A---GG--AT--AAG-GAA-TCAAAAGTTG-CTT-T-AAAA---TCACCCT--CA-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CATA--TATT-ACGC-A-AAATTAT-CT--C--------AATATCTAT-GTACATGTAAACT--------AGTAAATTTTTCAACAAT-T-A--T-AATGAGAAA-TTA-T----------------AAAC--AAAGCAACGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTCCACTGTTTCTTTT----TTTTTAACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTATCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTT-G-ATAT-TTTGGCAAA-TA-TTAGCA-TT-TAATTTGGGGGCAGGGGAGGGGGTGGGGGCT-TGTCAAGAGAAATTTAGTAGAG---GAACTAC-ACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTG-AATCTTTCTTCCTCTCCTTG-GGCG-GTTCGTAT-AGTTTATATAAATCAAT-GCT-AGTATAAATC-CC---GTAAGC--AAACTGT--ATTATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAG------------C--T----------G--------TAT----AG--GT----ATACCCGA-TGG--TGC---AG-T---CA-CAGAT-G--CC-AGA-AAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTTGATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTGTTATA-AAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGATACT
gi|3 : TCTCTCTCTCTCTC---TCTCTCTGAAAT-AA--A---GT--AT--GAA-GGA-TAAAAAGTTT-CTT-T-AAAAA--TCACT-T--CA-A---TATAGGTTTGCGCT--CCGT-GG-TA-T-CAAA--TATT-ACGC-A-AAATTAT-CTG-C--------AATATCTGT-GTA-------ACT--------AGTAAAATCTTCCACAAT-T-A--C-TATGAGAAA-TTA-TTCGATGATTTTCG---AAAC--CAAGCA-CGTATTTTTCTTGGGG------GGTGGGG-----TATCTCCACTTTTGT-GGAT---AACGTTGC-CTGTTTCTTTT------TTTAACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGAC-GTCC-TAGCTGCT-CCTTTGTCTATTGAT---GTAACTG-TAA---ACCTG-TTAGAAATGGACCTC-----ATGTTGTGATAA-AGAT-TTT-GAATA--TTTGGCAAA-----TAGTA-TT-AAATTT
gi|5 : TCTCTCTC-CTCTC---TCT-TCTGAAAT-AA--A---GG--AT--AAG-GAA-TCAAAAGTTG-CTT-T-AAAA---TCACCCT--CA-A---TATttttttttttgcttgtgaagaaatttggtaaacgaactagaccccccccccccaactttaagaatcaatgctacctgcctgaaatctttcttcctctccttggccgttcatataagtctataaagcaatgctagtaatcccagtgagaaaactgtgattattaacaattattataaagtctccaaaaaggtgtttaagctttggatacctttataggtataccgcatggatgcagtcacagatgccaagaaattgttataaaaacacttcggaattgtgtattatactatacccataggattcaaccttctatttataaaaacaccaggtgttagacccagatttgaaactg
gi|23 : atatagtcaaaattaaacatttatgtctgtttactttaatctgtcagaacgacaggatcatacaactttataagtagtaaaaataaataaataaacaatcttgaaatatctgtcaggtagaaataaaaggaatacaatattctgcgcacaattggaaatacctaaacatgcatgcacgagttgaaatttcgtcacaatcgtaagaactttatttatttgatatactgtactgtaaacaaaactgaattgtttaaaactgactgtatatacaacactcaataaatcgaatttcaaacatatatgaacggttataaatcgaatatttttgttcggaaagtatttcaatgtacatatctttagtagtaaagttatctctaaaaatgatatccatcgaattttacctatacatataaatcatgtatatttgataaaggggcaatttatttttcatttcaagtatcaattcaccattcgttgatctaatttgaaatacatgcatgggttttgaaatattaacgtgcagatgcatgactaggttattctataaaagaaaatgcgtttcaaaaagaatttgaaaagtcgaaacaatatttatttagtaaggatcattttgtgtttgtgttctatacagtatctctcTCTCTCTCTCTCTC---TCTCTCTGAATT-AGCCA---GC--ATTAAAG-GA---CAAAA
gi|1 : cCTCTGCG-CTCTCGTGTCT-CGTGAAATTAA--A---GGGGAT--AAGCGAAGTAAAAAGTTGGCTTGT-AAAAAAGTCATTCTGTCG-AGGATATAGGTT-GCGCTTCGCGT-GGGTAGTGCAGAAGTGTG-ACGC-AGAAATTAT--T--CGTGGGCAGAATATCGATTGTACATTGAAGCTGAGGTGAGAGTGTGTGTTGCGACGAGAT-ACGT-ATTGAGAAAATTA-TTCGATGCCTTTTTCGAAAACCAAAAGCA-CGTATTTTTCTTGGGGTGGAGTGGTGGGAGGCGTTATCTAT-CTTTTGTGGGATCAAGACGTTCAACTG--TCTCTT----TTTTTAACGTGT-AAAGGTTAGTTATTTGTCCGCATGCAAAGTGAAGATATTTGGTGACTGTCCTTAGCTGCTCCTGTGTTCTATTGATTGAGTAACTGATAGCACACCTGCTTAG-GATTGATCCCATATGATGTAGTGAGAAGAGATGTTT-GAATAT-TTGAGCCAA-GAGTTAGCA-TTGTAATTTGGGCGCGGG---------GGGGACTATGTC---AGAATTGCAGTAGAGCGAAAACTACAACCCCCACCCCC--ACCCCACTTAAG-ATCAGAGCTAGCGTGCCTGAAATCTT--TTTCTCTCCGTGTGGCGCGT--GTAT-AGTTTAT---AATCAATGGCTGAG--TAAGTCGCCGCGGTAAGCAGAAACTGTGCATAGTTAA---CA--ACTT-ATTA-TAA-AA-GCTCTT-CCAAACAAGCGCTG-TCTAAGCTTGTTGGATACC--T----------G--------TAT----AGGCGT----ATACCGCA-TGGA-TGC---A--T---CA-CAGG--G--CCGAGAGAGAGTG-TGAGTGCAAAACACTG--GG-A--------ATTGG------TGGTAGTT---TATTTGATAGCCTATAGCACGCC-ATGAGGCAGAGTTCAGACCCTGGTTAA--GTTGTATAAGAATGAGCT-AGATGTTGAGAC-CTTAGTTTG
gi|4 : CTCT-TC-CTCTC---CTC-TCTGAAATCAA--ATGCGA--AT--CAG-GA--TAAAAAGTTG-CTT-TAAAAA---TCA-CCT--CAGA---TACAcatgactgac
gi|8 : agtcaatcaattctctataaatctttcatgtctcgtttacttatcctttgctcagaagacaggatcatcaacttttaaagtaaaaatcaatataataacagatcttgaaatatctgtcaggtagaaaaaaaggaatacattatctgcgcccaaaatggaatacctaccatttctgtcactgtcctctgatttttctggaaatttccgctcacacatcgtacgaacctttttcattatcttgaattattatttatctatccgtgtaacccaatcacgggaattgtttaaaactgcttattcaattctcagacaccattaaatccgaaatttttgttcgtgcttaaaacctcttgtctatttctattaacatattcctttagtagtaaagttattctttaaaatgttcatcccattccgaattcttaccctatacatatagataaatgaagctatactcttgatacgggtgccaatttattttcaatgtcagtctcatcaattcacatcttcgttgatctacttttgaaattacatgcatgggtttttcgaatattaacgtggcagatgatgacttggtttattccctataaagcaaagattgaaagtcttgcaaacaacttactcttccatttagtagtacatcatttgtgtttatacactccgtatactcactcGAAAC-AA--A---GGG-AC--AAG-GAA-TAAAAAGTTG-CTT-T-AAAAA--TCACCCT--CA-AA--TATAGGTTTGCGCTTCC-GTAGG-TA-T-CA-A--TATTTACGCCA-AAATTATTCTGGC--------AATATCTAT-GTACATGTAA-CT--------AG-AAATTTTTTCACAAT-TTA--TTAATGAGAAA-ATAAT----------------AAAC--AAAGCA-CGTAATTTT-TAGGGGT-GAG-GGTGGGG-----TATCTATACTTTTTG-GGAT---AACGTT-CACTGTTTCTTTT----TTTAAACCATTTAAAA-GTTAG-TATT--TTCGCATGC-AAGT-AAGATA-TTGG
gi|22 : tgCTTTTGT-GGAT---AACGTT-CACTGTTTCTTTTTCTATTTTTAACGTGT-CAA-GTTA
gi|13 : TAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGATGACTGTCC-TAGCTGCTCCCTTTGTCTATTAAT--AGTAACTT-TAA---ACC---------------CCCATAT-ATGTAGTGAGAA-AGAT-TTTCA-ATA--TTTGG-AAA--A-TTAGCATTT-TAATTTagattttgaatatttggcaaaat
gi|18 : A-AGAT-TTT-G-A-ATATTTGGCAAAATA-TT-----TT-T--TTT-----------------TTTGGGCT-TGTCAAGA--AATTTAGTAAAC---GGACTATGAC-----CCCCC--AT----TTTAA
gi|3 : GCT-TGTGAAGA--AATTTGGTAAAC---GAACTAG-ACCCCCCCCCCCCAAC----TTTAAGAATCAATG-CTACCTGCCTGAAATCTTTCTTCCTCTCCTT--GGCC-GTTCATATAAGTC--TATAAAGCAAT-GCT-AGT---AATC-CCA--GTGAGA--AAACTGTG-ATTATTAA---CA--A-TT-ATTA-T-A-AA-G-TC-T-CCAAAAAGG---TGTT-TAAG------------CTTT----------GGATACCTTTAT----AG--GT----ATACCGCA-TGGA-TGC---AG-T---CA-CAGAT-G--CC-AAG-AAATTG-TTA-T-AAAAACACTTC-GG-A--------ATT-G-------TGTA-TT---------ATA--CTAT---A-CCC-AT-----AGGATTCA-A--CCTTCT-AT--TTATA-AA-AAC--ACC-AGGTGTT-AGAC-CCAGATTTGAAACTtcgcaaagctctgctgaa
gi|11 : tctctctctctctctctctctgaaataaagtatgaaggataaaaagtttctttaaaaatcacttcaatataggtttgcgctccgtggtatcaaatattacgcaaaattatctgcaatatctgtgtaactagtaaaatcttccacaattactatgagaaattattcgatgattttcgaaaccaagcacgtatttttcttggggggtggggtatctccacttttgtggataacgttgcctgtttctttttttaacatgtaaagttagttattttcgcatgcaaagtaagatattggtgacgtcctagctgctcctttgtctattgatgtaactgtaaacctgttagaaatggacctcatgttgtgataaagattttgaatatttggcaaatagtattaaatttttttttttttAGT--AAACTGT--ATT--TG----------TT-ATCA-CAACAA-G-TT-TTCCAAAAAGG---TG-T-TAAG------------C--TTT--------G--------GAT----AC--CTCTAGATACCTGA-CGG--CACGCGAG-TGTACA-CA--------C-AGG-AAATAG-TTA-T-CAAAACACTT--GA-A--------TTT-AGACCATTTGAA-CTTTGTATTT--TA-CATAT---ACCCT-A--------GATTGA-ACCACTTC-AATTTTTTTT-AATAAC--g
gi|21 : TATTAAGTACATCA-TT-ATTAATAA-AAAG-TCAT-CTCAAAAGG---TG-T-TAAG------------C--T----------ccctccataacaaagc
gi|12 : tgtgattttaA---CA--A-TTTATTA-TAA-AA-GGTC-T-CCAAAAAGG---TGGT-TAAG------------C--TTTGGATACCTG--------TAT----AG--GT----ATACCGTA-TGGA-TGC---AG-T---CAACAGATTG--CC-AGG-AA----------------CACTG--GG-A--------AT--G------T-GTA-TTA--TATTT-ATA-CCTAT---ACCC--AT-----AGGATCCA-ACCCCTTCT-ATTGTTATA-AGGAAC--ACT-A-GTGTT-AGA--CCAGATTTGATACTtttggatacctttacaaattcggtat
gi|10 : A--A-CT-GTTA-TCACAA-G-TC-TTCCAAAACGA---TG-T-TAAG------------C--TTTGA------A--------TATCCCTAG--GT----ACATCTTACTGGAGTGCC--AGAC---CC-CACAC-A--AC-AGA-AAATAG-CTA-T-CAAAACACAT--GG-ATCTAGACCATT-AGAACT-TTGTA-T------TTTAA-----TAT---ACCTT-AG-----AGGA---A-ACCACTTC-AATTTTTATG-AAGAA
gi|14 : agaaagaatatgagcaGAT-GGACC-AGAGAAATTGCTTA-T-AAGAGCACCTTGGG-A--------ATT-G------T-GTG-AT---TATACG-T--CCTTG---ACCCCGAT------GGATTCA-ACCTTTCCTA-TTGTTATA-AAAAGC--ACTAAGGTGTT-AGACTCCAGATTTGA-ACTaaaatccaccagaaaa
gi|16 : ATTG-TTA-T-CAAAACACTT--GGGA--------ATT-G------T-GTA-GT---------ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACGCCTTCTAATTCTTATA-A--AAC--ACT-AGGTGAT-AGAC-CCAGATTTGAAACTg
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): ATATAGTCAAAATTAAACATTTATGTCTTGTTTACTTATCTGTCAGAACGACAGGATCATACAACTTTAAAGTACAGTAAAATAAATAAATAAACAATTCTTGAACATATCTGTCCAGGTTAGAAATAAAAGGAATACAATATTCTCGCGTCACAATTGGAAAAACCTAAACATGCATGCACGAGTTGAAATTTTTTCACAATCGCTTAAGAACTTTTATTTATTTGTTATATCGTTACTGTAACAAACTGAATTGGTTTAAAACTGCTTAGTATAACACACCATTAAATCGAAATTAAACATATATTGATACGGTTTATAAATCGAATATTTTTGTTCGGAAAATGTATTTCAATGTACATAATCTTTAGAGTAAAGTTATTCTCTAAAAAGATATCCATCGAAATTTTTACCATATCATATAATTATGTATATTTTGATATAAAGGGGCAAATTTATTTTTCATTTCAATATCAATTCACATTCGTTGATCTAAGTTTGAAATTACATTTGATGGGTTTTTTGAATATTAACGTGCATGATGATGACTAGGTTATTCTATAAAAGAAAACTGCGTTTCAAAAGAATTGAAAGTCGAAACAGATATTCATTTAGTAAGGATCATTTGGTTTCTATACA
Unaligned ( gi|7 ): ATAGTCAAATTTAAACATTTATTGTCTCGTTTTAGCGTGTGATGTCGTGTCAGACCACGACAGGGTCACTACAACTGGGTTTAAAGTAAAAAAAGAAACTATTTTTTATAAAATCCCTTGAAATTTATATGCTGTCAGGGTAGCAAATTAAAAGGAGGAGGGGTGACGAATGTATTCTGCGCGACAAATGGAACATACCTACATGCATGCACGAGTTTTGAAATTTCTGTCCACGAACTCGTAGAACTTTTATTTAATTTGAAGTATATGTTACTGGTAACACAAACTGAATTGTTTTAAAACTGCTTTAGGTACTAACACACCACAATAAATCGAAATTTCAAACACTATATGATGTACCTGTGTATAAATCGGAATATTTTTGCTTCGGTAAACAATGTATGGTTCAATG
Unaligned ( gi|9 ): AAATAAAAGAAATACAATATTCTGCACACAAATGGAAATATATCTACATCCATGCATGAGTTAAAATTTTGTCACATTGAATCGTGAATTTTTTTATTTATTCTACATTCAACACACCAGTAAATTGAAATTTCAAATATATATATGCTATGGTTATAAATCAAATATTTTTGTTTGGAAAATGTATGTATTTCAATGTACACCTCTTATCCGTTGAATTTTACCTGTACATCTGTATATTCGATAAAAGGGCAATTTATCTTT
Unaligned ( gi|15 ): GAGAGAAACTGCGTTTTAACAAGGAATTTTGAAAGCGAAACAGATATTCAGTTTAGTAAGGGATCATTTTGGGGGTGGTTACTATAGCAGTTAGTTACTCTCTCTCTCGTCCTCGTCTCGTCT
Unaligned ( gi|17 ): ACGTGCAAATGATAACTTATAGTTCTTTCTTTATGAAAGAAAAATGTGGTTCAAAAGAATTTGAAAGTGGAAATATTTGTTAACTTTAGTAAGGATCATTTGGTGTT
Unaligned ( gi|19 ): ATGTACATATCTTTAGTAGTAAAGTTATACTCTAAAAGATATCCATCGAATTTTACCTAATATACGTATAAATTATGTATATTTGATAAAGGGGCA
Unaligned ( gi|20 ): GGATCATACAAGTTTTAAAATAAAAAAAAAATAATAAAAAATCTTGAAATATCTGTTAGGTAGAAATAAAAGGAATACAATATTCTG
Alignments
lowQualScore : 1 111 11 111 1 1 111 1111 1 111 1 333333333 1 5555555555555555 22222222 1 888888888888888888 11 1 11 1 22222 111 1 1111 11 1 1 1 111 1 111 1 333333 1 1 88888888888888888888 1 111 1 11 11 2 222222222 1111 22 2 2 44444444444444444 111 11 11111 1111 1111 1 1 111 111 1 66666666666666666666666666 1111 111 11111 11 1 11 11111111 4444444444444444444444444444 1111111
lowQualScore : 6 5 6 6 6 6 1 77 000 33 5 5 5 6 6 99 1 99 6 888 3 3 2 0 0 111 7777 0 111 0 555555555 0 2 4444444444444444 3 2 2 00000000 0 999999999999999999 33 0 2 33 0 55555 3 8 444 6 0 7777 77 8 8 0 11 0 8 8 3 0 5 0 777 0 777 2 0 888888 3 0 6 6 5 3 99 88 0 8 8 00000000000000000000 0 777 0 33 33 2 0 333333333 7 11 6 11 1 7 7 4444 00 7 3 88 7 1 3 11111111111111111 0 444 33 55555 0000 3333 5 5 1 1 5 1 333 000 1 5 33333333333333333333333333 99 4444 66 6 222 6 6 11111 6 2 77 5 1 0 5 5 5 11 5 88888888 5 1111111111111111111111111111 888 55 2222222 5 66 1 2 4 77 6 6 6 1
lowQualScore : . . . . . . . .. ... .. . . . . . .. . .. . ... . . . . . ... .... . ... . ......... . . ................ . . . ........ . .................. .. . . .. . ..... . . ... . . .... .. . . . .. . . . . . . . ... . ... . . ...... . . . . . . .. .. . . . .................... . ... . .. .. . . ......... . .. . .. . . . .... .. . . .. . . . ................. . ... .. ..... .... .... . . . . . . ... ... . . .......................... .. .... .. . ... . . ..... . . .. . . . . . . .. . ........ . ............................ ... .. ....... . .. . . . .. . . . .
lowQualScore : 7 7 7 7 7 7 4 99 000 66 7 7 7 7 7 22 0 22 7 333 2 2 5 0 0 000 5555 0 000 0 222222222 0 5 5555555555555555 2 5 0 55555555 0 555555555555555555 88 0 5 22 0 00000 2 0 000 0 8 0000 00 0 0 8 00 8 0 0 2 0 0 0 000 0 555 5 0 222222 2 0 7 7 5 2 22 33 8 0 0 55555555555555555555 0 000 0 88 00 5 0 888888888 3 77 7 77 0 3 3 0000 77 3 7 00 3 0 3 00000000000000000 7 888 33 88888 1111 7777 7 7 4 4 7 4 999 000 4 7 77777777777777777777777777 22 2222 22 7 555 7 7 88888 7 5 22 7 4 5 0 0 0 99 0 11111111 0 6666666666666666666666666666 888 22 8888888 0 55 0 2 5 99 7 7 7 4
consensus : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--CA-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CANA--TATT-ACGC-A-AAATTAT-CTG-C------AATATCTAT-GTACAT--A-AACT--------AGTAAATTTTTCNACAAT-T-A--T-AATGAGAAA-TTATTCGATG-C---TTTCG-AAAC--AAAGCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATT-GACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATATTTTGGC--AAA-ATTAGCA-TT-TAATTTGGG-GC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCCACCCCC---AC----TTTAAGAATCAATGCCTACGTGCCTGAAATCTTTCTTCCTCTCCTTGTGGCGCGTTCGTAT-AGTTTATATAAATCAAT-GCT-AGT-TAAATC-CC-CGGTAAG--NAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGCTT----------TGGA------TA----TAG--GT----ATACCNNA-TGG-A-TG-C-AG-T---CA-CAGAC-GCC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTT-ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
Reference ( family-2061 ) : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--CA-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CAGA--TATT-ACGC-A-AAATTAT-CTG-C------AATATCTAT-GTACAT--A-AGCT--------AGTAAATTTTTCCACGAT-T-A--T-AATGAGAAA-TTATTCGATG-C---TTTC--AAAC--AAAGCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-GA-T-GACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATATTTTGGC--AAA-ATTAGCA-TT-TAATTTGGGCGC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCC-CCCCC---AC----TTTAAGAATCAGNGCCNGCNTGCCTGAAATCTTTCTTCCTCTCCNTGTGGCNCGTTCGTATAAGTCTATATAAANCAATGGCTGAGT-TAAGTCGCCGCGGTGAG--NAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGCTT----------TG--------TA----TAG--GT----ATACCGCA-TGG-A-TG-C-AG-T---CA-CAGAC-GCC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTT-ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
gi|1 : CTCTGCGCT-CTCGTGTC-TCGTGAAATTAA--A---GGGGA-TAAGCGAAGTAAAAAGTTGGCTTGTAAAAAAGTCATTCTGTCG-AGGATATAGGTT-GCGCTTCGCGT-GGGTAGTGCAGAAGTGTG-ACGC-AGAAATTAT-TCG-TGGGCAGAATATCGATTGTACATTGA-AGCTGAGGTGAGAGTGTGTGTTGCGACGAGAT-ACGT-ATTGAGAAAATTATTCGATG-CCTTTTTCGAAAACCAAAAGCA-CGTATTTTTCTTGGGGTGGAGTGGTGGGAGGCGTTATCTAT-CTTTTGTGGGATCAAGACGTTCAACTG--TCTCTT----TTTTTAACGTGT-AAAGGTTAGTTATTTGTCCGCATGCAAAGTGAAGATATTTGGTGACTGTCCTTAGCTGCT-CCTGTGTTCTATTGATTGAGTAACTGATAGCACACCTGCTTAG-GATT-GATCCCATATGATGTAGTGAGAAGAGATGTTTGAATATTTGAGCCAAGA-GTTAGCA-TTGTAATTTGGGCGC--------GGG-GGGGACTATGTC---AGAATTGCAGTAGAGCGAAAACTACAACCCCCACCCCC---ACCCCACTTAAG-ATCAGAGCTAGCGTGCCTGAAATCTT--TTTCTCTCCGTGTGGCGCGT--GTAT-AGTTTAT---AATCAATGGCTGAG--TAAGTCGCCGCGGTAAGCAGAAACTGTGCATA----GTTAA---CA--ACTT-ATTA-TAA-AA-GCTCTT-CCAAACAAGCGCTG-TCTAAGCTTGTTGGATACCTG--------TA----TAGGCGT----ATACCGCA-TGG-A-TG-C-A--T---CA-CAGG--GCCGAGAGAGAGTG-TGAGTGCAAAACACTG--GG-A--------ATTGG------TGGTAGTT---TATTTGATAGCCTATAGCACGCC-ATGAGGCAGAGTTCAGACCCTGGTTAAGTTGTAT-AAGAATGAGCT-AGATGTTGAGAC-CTTAGTTTG
gi|10 : G-AAT----ATGAG---CA--AACT-GTTA-TCACAA-G-TC-TTCCAAAACGA---TG-T-TAAGCTT----------TGAA------TATCCCTAG--GT----ACATCTTACTGG-AGTGCC-AGAC---CC-CACAC-AAC-AG-AAAATAG-CTA-T-CAAAACACAT--GG-ATCTAGACCATT-AGAACT-TTGTA-T------TTT-A-A---TAT---ACCTT-AG-----AGGA---A-ACCACTTC-AATTTTTATGAAGAAcatgactgac
gi|11 : agaaaAG--TAAACTGT--ATT------TG----------TT-ATCA-CAACAA-G-TT-TTCCAAAAAGG---TG-T-TAAGCTT----------TG--------GA----TAC--CTCTAGATACCTGA-CGGCA-CG-CGAG-TGTACA-CA------C-AG-GAAATAG-TTA-T-CAAAACACTT--GA-A--------TTT-AGACCATTTGAA-CTTTGTATTT--TA-CATAT---ACCCT-A--------GATTGA-ACCACTTC-AATTTTTTTTAATAAC--aaaatccaccagaaaa
gi|12 : A---CA--A-TTTATTA-TAA-AA-GGTC-T-CCAAAAAGG---TGGT-TAAGCTT----------TGGATACCTGTA----TAG--GT----ATACCGTA-TGG-A-TG-C-AG-T---CAACAGATTGCC-AG-GAA----------------CACTG--GG-A--------AT--G------T-GTA-TTA--TATTT-ATA-CCTAT---ACCC--AT-----AGGATCCA-ACCCCTTCT-ATTGTTATAAGGAAC--ACT-A-GTGTT-AGA--CCAGATTTGATACTccctccataacaaagc
gi|13 : TAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGATGACTGTCC-TAGCTGCTCCCTTTG-TCTATTAAT--AGTAACTT-TAA---AC----------------CCCCATAT-ATGTAGTGAGAA-AGAT-TTTCAATA-TTTGG---AAA-ATTAGCATTT-TAATTT
gi|14 : CC-AGAGAAATTGCTTA-T-AAGAGCACCTTGGG-A--------ATT-G-------TGTG-AT---TATAC-GT--CCTTG---ACCCCGAT------GGATTCA-ACCTTTCCT-ATTGTTATAAAAAGC--ACTAAGGTGTT-AGACTCCAGATTTGAA
gi|16 : gatggaATTG-TTA-T-CAAAACACTT--GGGA--------ATT-G------T-GTA-GT---------ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACGCCTTCTAATTCTTATAA--AAC--ACT-AGGTGAT-AGAC-CCAGATTTGAAACTctg
gi|18 : A-AGAT-TTTGAATATTT-GGC--AAA-AT----A-TT-TTTTTT-----------------TTTGGGCT-TGTCA--AGAAATTTAGTA-AACG--GACTATGA----C-CCCCC---AT----TTTAAga
gi|2 : TCTCTCT-C-CT-CTC-TCT--TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TCAAAAGTTG-CTT-TAAAA---TCACCCT--CA-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CATA--TATT-ACGC-A-AAATTAT-CT--C------AATATCTAT-GTACATGTA-AACT--------AGTAAATTTTTCAACAAT-T-A--T-AATGAGAAA-TTAT-----------------AAAC--AAAGCAACGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTCCACTGTTTCTTTT----TTTTTAACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTA-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATT-GACCCCATAT-ATGTAGTGAGAA-AGAT-TTTG-ATATTTTGGC--AAATATTAGCA-TT-TAATTTGGGGGCAGGGGAGGGGGTGGGGGCT-TGTCAAGAGAAATTTAGTA-GAGG--AACTAC-ACCCCCACCCCC---AC----TTTAAGAATCAATGCCTACGTGCCTG-AATCTTTCTTCCTCTCCTTG-GGCG-GTTCGTAT-AGTTTATATAAATCAAT-GCT-AGTATAAATC-CC---GTAAG--CAAACTGT--ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC------------TG--------TA----TAG--GT----ATACCCGA-TGG---TG-C-AG-T---CA-CAGAT-GCC-AG-AAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTTGATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTGTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGATACTtcgcaaagctctgctgaa
gi|21 : TGTG-ATTTTATATTAAGTACATCA-TT-ATTAATAA-AAAG-TCAT-CTCAAAAGG---TG-T-TAAGCTT----------T
gi|22 : CTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTTTCTATTTTTAACGTGT-CAA-GTTAtggatacctttacaaattcggtat
gi|22 : A-AGAT-TTTGAATA-TTTGGC--AAA-ATagattttgaatatttggcaaaat
gi|23 : cttttgtggataacgttcactgtttctttttctatttttaacgtgtcaagttTCTCTCT-CTCT-CTC-TCTC-TC-TGAATT-AGCCA---GC--ATTAAA-GGA-CAAAA
gi|3 : cTCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GT--A-TGAA-GGA-TAAAAAGTTT-CTT-TAAAAA--TCACT-T--CA-A---TATAGGTTTGCGCT--CCGT-GG-TA-T-CAAA--TATT-ACGC-A-AAATTAT-CTG-C------AATATCTGT-GTA--------ACT--------AGTAAAATCTTCCACAAT-T-A--C-TATGAGAAA-TTATTCGATGAT---TTTCG-AAAC--CAAGCA-CGTATTTTTCTTGGGG------GGTGGGG-----TATCTCCACTTTTGT-GGAT---AACGTTG-CCTGTTTCTTTT----TTT--AACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGAC-GTCC-TAGCTGCT-CCTTTG-TCTATTGAT---GTAACTG-TAA---ACCTG-TTAGAAA-TGGACCTC-----ATGTTGTGATAA-AGAT-TTTGAATA-TTTGGC--AAA---TAGTA-TT-AAATTT----TT--------TTTTTTTTGCT-TGTGA--AGAAATTTGGTA-AACG--AACTA-GACCCCC-CCCCCCCAAC----TTTAAGAATCAATG-CTACCTGCCTGAAATCTTTCTTCCTCTCCT--TGGC-CGTTCATATAAGTC--TATAAAGCAAT-GCT-AGT---AATC-C--CAGTGAG--AAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-T-A-AA-G-TC-T-CCAAAAAGG---TGTT-TAAGCTT----------TGGATACCTTTA----TAG--GT----ATACCGCA-TGG-A-TG-C-AG-T---CA-CAGAT-GCC-AA-GAAATTG-TTA-T-AAAAACACTTC-GG-A--------ATT-G-------TGTA---------TT-ATA--CTAT---A-CCC-AT-----AGGATTCA-A--CCTTCTA---TTTATAAA-AAC--ACC-AGGTGTT-AGAC-CCAGATTTGAAACT
gi|4 : CTCT-TCCT-CTC--CTC-TC-TGAAATCAA--ATGCGA--A-TCAG-GA--TAAAAAGTTG-CTT-TAAAAA--TCA-CCT--CAGA---TACAg
gi|5 : agtcaatcaattctctataaatctttcatgtctcgtttacttatcctttgctcagaagacaggatcatcaacttttaaagtaaaaatcaatataataacagatcttgaaatatctgtcaggtagaaaaaaaggaatacattatctgcgcccaaaatggaatacctaccatttctgtcactgtcctctgatttttctggaaatttccgctcacacatcgtacgaacctttttcattatcttgaattattatttatctatccgtgtaacccaatcacgggaattgtttaaaactgcttattcaattctcagacaccattaaatccgaaatttttgttcgtgcttaaaacctcttgtctatttctattaacatattcctttagtagtaaagttattctttaaaatgttcatcccattccgaattcttaccctatacatatagataaatgaagctatactcttgatacgggtgccaatttattttcaatgtcagtctcatcaattcacatcttcgttgatctacttttgaaattacatgcatgggtttttcgaatattaacgtggcagatgatgacttggtttattccctataaagcaaagattgaaagtcttgcaaacaacttactcttccatttagtagtacatcatttgtgtttatacactccgtatactcactcTCTCTCT-CTCTCCTC-TCTCTTC-TGAAAT-AA--A---GG--A-TAAG-GAA-TCAAAAGTTG-CTT-T-AAAA--TCACCCT--CA-A---TAT
gi|8 : atatagtcaaaattaaacatttatgtctgtttactttaatctgtcagaacgacaggatcatacaactttataagtagtaaaaataaataaataaacaatcttgaaatatctgtcaggtagaaataaaaggaatacaatattctgcgcacaattggaaatacctaaacatgcatgcacgagttgaaatttcgtcacaatcgtaagaactttatttatttgatatactgtactgtaaacaaaactgaattgtttaaaactgactgtatatacaacactcaataaatcgaatttcaaacatatatgaacggttataaatcgaatatttttgttcggaaagtatttcaatgtacatatctttagtagtaaagttatctctaaaaatgatatccatcgaattttacctatacatataaatcatgtatatttgataaaggggcaatttatttttcatttcaagtatcaattcaccattcgttgatctaatttgaaatacatgcatgggttttgaaatattaacgtgcagatgcatgactaggttattctataaaagaaaatgcgtttcaaaaagaatttgaaaagtcgaaacaatatttatttagtaaggatcattttgtgtttgtgttctatacagtatcGAAAC-AA--A---GGG-A-CAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--CA-AA--TATAGGTTTGCGCTTCC-GTAGG-TA-T-CA-A--TATTTACGCCA-AAATTATTCTGGC------AATATCTAT-GTACAT--GTAACT--------AG-AAATTTTTTCACAAT-TTA--TTAATGAGAAA-ATA----AT------------AAAC--AAAGCA-CGTAATTTT-TAGGGGT-GAG-GGTGGGG-----TATCTATACTTTTTG-GGAT---AACGTTC-ACTGTTTCTTTT----TTTAAACCATTTAAAA-GTTAG-TATT--TTCGCATGC-AAGT-AAGATA-TTGG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATATAGTCAAAATTAAACATTTATGTCTTGTTTACTTATCTGTCAGAACGACAGGATCATACAACTTTAAAGTACAGTAAAATAAATAAATAAACAATTCTTGAACATATCTGTCCAGGTTAGAAATAAAAGGAATACAATATTCTCGCGTCACAATTGGAAAAACCTAAACATGCATGCACGAGTTGAAATTTTTTCACAATCGCTTAAGAACTTTTATTTATTTGTTATATCGTTACTGTAACAAACTGAATTGGTTTAAAACTGCTTAGTATAACACACCATTAAATCGAAATTAAACATATATTGATACGGTTTATAAATCGAATATTTTTGTTCGGAAAATGTATTTCAATGTACATAATCTTTAGAGTAAAGTTATTCTCTAAAAAGATATCCATCGAAATTTTTACCATATCATATAATTATGTATATTTTGATATAAAGGGGCAAATTTATTTTTCATTTCAATATCAATTCACATTCGTTGATCTAAGTTTGAAATTACATTTGATGGGTTTTTTGAATATTAACGTGCATGATGATGACTAGGTTATTCTATAAAAGAAAACTGCGTTTCAAAAGAATTGAAAGTCGAAACAGATATTCATTTAGTAAGGATCATTTGGTTTCTATACA
Unaligned ( gi|7 ): ATAGTCAAATTTAAACATTTATTGTCTCGTTTTAGCGTGTGATGTCGTGTCAGACCACGACAGGGTCACTACAACTGGGTTTAAAGTAAAAAAAGAAACTATTTTTTATAAAATCCCTTGAAATTTATATGCTGTCAGGGTAGCAAATTAAAAGGAGGAGGGGTGACGAATGTATTCTGCGCGACAAATGGAACATACCTACATGCATGCACGAGTTTTGAAATTTCTGTCCACGAACTCGTAGAACTTTTATTTAATTTGAAGTATATGTTACTGGTAACACAAACTGAATTGTTTTAAAACTGCTTTAGGTACTAACACACCACAATAAATCGAAATTTCAAACACTATATGATGTACCTGTGTATAAATCGGAATATTTTTGCTTCGGTAAACAATGTATGGTTCAATG
Unaligned ( gi|9 ): AAATAAAAGAAATACAATATTCTGCACACAAATGGAAATATATCTACATCCATGCATGAGTTAAAATTTTGTCACATTGAATCGTGAATTTTTTTATTTATTCTACATTCAACACACCAGTAAATTGAAATTTCAAATATATATATGCTATGGTTATAAATCAAATATTTTTGTTTGGAAAATGTATGTATTTCAATGTACACCTCTTATCCGTTGAATTTTACCTGTACATCTGTATATTCGATAAAAGGGCAATTTATCTTT
Unaligned ( gi|15 ): GAGAGAAACTGCGTTTTAACAAGGAATTTTGAAAGCGAAACAGATATTCAGTTTAGTAAGGGATCATTTTGGGGGTGGTTACTATAGCAGTTAGTTACTCTCTCTCTCGTCCTCGTCTCGTCT
Unaligned ( gi|17 ): ACGTGCAAATGATAACTTATAGTTCTTTCTTTATGAAAGAAAAATGTGGTTCAAAAGAATTTGAAAGTGGAAATATTTGTTAACTTTAGTAAGGATCATTTGGTGTT
Unaligned ( gi|19 ): ATGTACATATCTTTAGTAGTAAAGTTATACTCTAAAAGATATCCATCGAATTTTACCTAATATACGTATAAATTATGTATATTTGATAAAGGGGCA
Unaligned ( gi|20 ): GGATCATACAAGTTTTAAAATAAAAAAAAAATAATAAAAAATCTTGAAATATCTGTTAGGTAGAAATAAAAGGAATACAATATTCTG
Alignments
lowQualScore : 1 111 11 111 11 1 1 111 1111 1 1 1 1 333333333 1 4444444444444444 111 22 1 66666666666666666 11 1 1 11 1 22222 111 1 1111 11 1 1 1 111 1 111 1 11 1 1 888888888888888888888 1 111 1 11 11 11 2222 111 11 1 1 22 22 222 111 11 11111 1111 1111 1 1 111 111 1 55555555555555 111 11111 11 1 11 11111111 4444444444444444444444444444 1111111
lowQualScore : 6 5 6 6 6 6 1 77 000 33 5 5 5 6 6 99 1 99 666 111 3 22 0 0 111 5555 0 0 0 0 555555555 0 2 7777777777777777 3 1 777 33 0 88888888888888888 33 0 0 2 33 0 55555 3 8 444 6 0 7777 77 8 8 0 11 0 8 8 3 0 5 0 777 0 777 3 0 00 3 0 3 0 6 6 5 3 99 88 0 8 8 999999999999999999999 0 777 0 33 33 2 3 33 1111 7 6 7 7 333 33 7 3 7 7 3 00 00 333 444 33 55555 0000 3333 5 5 1 1 5 1 333 000 1 5 5 77 55555555555555 99 22 6 222 6 6 11111 6 2 77 5 1 0 5 5 5 11 5 88888888 5 1111111111111111111111111111 888 55 2222222 5 66 1 2 4 77 6 6 6 1
lowQualScore : . . . . . . . .. ... .. . . . . . .. . .. ... ... . .. . . ... .... . . . . ......... . . ................ . . ... .. . ................. .. . . . .. . ..... . . ... . . .... .. . . . .. . . . . . . . ... . ... . . .. . . . . . . . . .. .. . . . ..................... . ... . .. .. . . .. .... . . . . ... .. . . . . . .. .. ... ... .. ..... .... .... . . . . . . ... ... . . . .. .............. .. .. . ... . . ..... . . .. . . . . . . .. . ........ . ............................ ... .. ....... . .. . . . .. . . . .
lowQualScore : 7 7 7 7 7 7 4 99 000 66 7 7 7 7 7 22 0 22 888 777 2 00 0 0 000 5555 0 0 0 0 222222222 0 5 2222222222222222 2 0 000 88 0 22222222222222222 88 0 0 5 22 0 00000 2 0 000 0 8 0000 00 0 0 8 00 8 0 0 2 0 0 0 000 0 555 2 0 88 0 2 2 0 7 7 5 2 22 33 8 0 0 888888888888888888888 0 000 0 88 00 5 0 88 2222 3 7 3 3 000 33 3 3 3 3 3 77 00 777 888 33 88888 1111 7777 7 7 4 4 7 4 999 000 4 7 7 99 66666666666666 22 00 7 555 7 7 88888 7 5 22 7 4 5 0 0 0 99 0 11111111 0 6666666666666666666666666666 888 22 8888888 0 55 0 2 5 99 7 7 7 4
consensus : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CANA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTAT-GTACAT--A-AACT--------AGTAAATTTTTCNACAA-T-TAC-TAATGAGAAA-TTATTCGATG-C---TTTCGAAA--CAAA-GCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATATTTTGGC--AAA-ATTAGCA-TT-TAATTT-GGG-GC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTGAAATCTTTCTTCCTCTCCTTGTGGCGCGTTCGTAT-AGTTTATATAAATCAAT-GCTAGT-TAAATC-CC-CGGTAAG--NAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC-T--TTGGA------TA-C----TAG--GTATACCNNA-TGG-A-TG-C-AG-T---CA-CAGAC-GCC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTT-ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
Reference ( family-2061 ) : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CANA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTAT-GTACAT--A-AACT--------AGTAAATTTTTCNACAA-T-TA--TAATGAGAAA-TTATTCGATG-C---TTTCGAAA--CAAA-GCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATATTTTGGC--AAA-ATTAGCA-TT-TAATTT-GGG-GC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTGAAATCTTTCTTCCTCTCCTTGTGGCGCGTTCGTAT-AGTTTATATAAATCAAT-GCTAGT-TAAATC-CC-CGGTAAG--NAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC-T--TTGGA------TA------TAG--GTATACCNNA-TGG-A-TG-C-AG-T---CA-CAGAC-GCC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTT-ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
gi|1 : CTCTGCGCT-CTCGTGTC-TCGTGAAATTAA--A---GGGGA-TAAGCGAAGTAAAAAGTTGGCTTGTAAAAAAGTCATTCTGTC-G-AGGATATAGGTT-GCGCTTCGCGT-GGGTAGTGCAGAAGTG-TGACG-CAGAAATTA-TTC-GTGGGCAGAATATCGATTGTACATTGA-AGCTGAGGTGAGAGTGTGTGTTGCGACGA-GATACGTATTGAGAAAATTATTCGATG-CCTTTTTCGAAAACCAAAAGCA-CGTATTTTTCTTGGGGTGGAGTGGTGGGAGGCGTTATCTAT-CTTTTGTGGGATCAAGACGTTCAACTG--TCTCTT----TTTTTAACGTGT-AAAGGTTAGTTATTTGTCCGCATGCAAAGTGAAGATATTTGGTGACTGTCCTTAGCTGCT-CCTGTGTTCTATTGATTGAGTAACTGATAGCACACCTGCTTAG-GATTGATCCCATATGATGTAGTGAGAAGAGATGTTTGAATATTTGAGCCAAGA-GTTAGCA-TTGTAATTT-GGGCGC--------GGG-GGGGACTATGTC---AGAATTGCAGTAGAGCGAAAACTACAACCCCCACCCCC--ACCCCACTTAAG-ATCAGAGCTAGCGTGCCTGAAATCTT--TTTCTCTCCGTGTGGCGCGT--GTAT-AGTTTAT---AATCAATGGCTGAG-TAAGTCGCCGCGGTAAGCAGAAACTGTGCATA----GTTAA---CA--ACTT-ATTA-TAA-AA-GCTCTT-CCAAACAAGCGCTG-TCTAAGC-TTGTTGGATACCTGTA------TAGGCGTATACCGCA-TGG-A-TG-C-A--T---CA-CAGG--GCCGAGAGAGAGTG-TGAGTGCAAAACACTG--GG-A--------ATTGG------TGGTAGTT---TATTTGATAGCCTATAGCACGCC-ATGAGGCAGAGTTCAGACCCTGGTTAAGTTGTAT-AAGAATGAGCT-AGATGTTGAGAC-CTTAGTTTG
gi|10 : G-AAT----ATGAG---CA--AACT-GTTA-TCACAA-G-TC-TTCCAAAACGA---TG-T-TAAGC-T--TTGAA------TATCCC--TAG--GTACATCTTACTGG-AGTGCC-AGAC---CC-CACAC-AAC-AG-AAAATAG-CTA-T-CAAAACACAT--GG-ATCTAGACCATT-AGAACT-TTGTA-T------TTT-A-A---TAT---ACCTT-AG-----AGGA---A-ACCACTTC-AATTTTTATGAAGAAcatgactgac
gi|11 : agaaaAG--TAAACTGT--ATT------TG----------TT-ATCA-CAACAA-G-TT-TTCCAAAAAGG---TG-T-TAAGC-T--TTGGA------TACCTC--TAG----ATACCTGA-CGGCA-CG-CGAG-TGTACA-CA------C-AG-GAAATAG-TTA-T-CAAAACACTT--GA-A--------TTT-AGACCATTTGAA-CTTTGTATTT--TA-CATAT---ACCCT-A--------GATTGA-ACCACTTC-AATTTTTTTTAATAAC--aaaatccaccagaaaa
gi|12 : A---CA--A-TTTATTA-TAA-AA-GGTC-T-CCAAAAAGG---TGGT-TAAGC-T--TTGGA------TACCTGTATAG--GTATACCGTA-TGG-A-TG-C-AG-T---CAACAGATTGCC-AG-GAA----------------CACTG--GG-A--------AT--G------T-GTA-TTA--TATTT-ATA-CCTAT---ACCC--AT-----AGGATCCA-ACCCCTTCT-ATTGTTATAAGGAAC--ACT-A-GTGTT-AGA--CCAGATTTGATACTccctccataacaaagc
gi|13 : TAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGATGACTGTCC-TAGCTGCTCCCTTTG-TCTATTAAT--AGTAACTT-TAA---ACC---------------CCCATAT-ATGTAGTGAGAA-AGAT-TTTCAATA-TTTGG---AAA-ATTAGCATTT-TAATTT-
gi|14 : CC-AGAGAAATTGCTTA-T-AAGAGCACCTTGGG-A--------ATT-G-------TGTG-AT---TATAC-GT--CCTTG---ACCCCGAT------GGATTCA-ACCTTTCCT-ATTGTTATAAAAAGC--ACTAAGGTGTT-AGACTCCAGATTTGAA
gi|16 : gatggaATTG-TTA-T-CAAAACACTT--GGGA--------ATT-G------T-GTA-GT---------ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACGCCTTCTAATTCTTATAA--AAC--ACT-AGGTGAT-AGAC-CCAGATTTGAAACTctg
gi|18 : A-AGAT-TTTGAATATTT-GGC--AAA-AT----A-TT-TTTTTT------------------TTTGGGCT-TGTCA--AGAAATTTAGTA-AACG--GACTATGAC-----CCCCC--AT----TTTAAga
gi|2 : TCTCTCT-C-CT-CTC-TCT--TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TCAAAAGTTG-CTT-TAAAA---TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CATA--TA-TTACG-CA-AAATTA-TCT--C------AATATCTAT-GTACATGTA-AACT--------AGTAAATTTTTCAACAA-T-TA--TAATGAGAAA-TTAT----------------AAA--CAAA-GCAACGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTCCACTGTTTCTTTT----TTTTTAACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTA-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTG-ATATTTTGGC--AAATATTAGCA-TT-TAATTTGGGG-GCAGGGGAGGGGGTGGGGGCT-TGTCAAGAGAAATTTAGTA-GAGG--AACTAC-ACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTG-AATCTTTCTTCCTCTCCTTG-GGCG-GTTCGTAT-AGTTTATATAAATCAAT-GCTAGTATAAATC-CC---GTAAG--CAAACTGT--ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC-T------G------TA------TAG--GTATACCCGA-TGG---TG-C-AG-T---CA-CAGAT-GCC-AG-AAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTTGATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTGTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGATACTtcgcaaagctctgctgaa
gi|21 : TGTG-ATTTTATATTAAGTACATCA-TT-ATTAATAA-AAAG-TCAT-CTCAAAAGG---TG-T-TAAGCTT--TTGGA------TA------
gi|22 : CTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTTTCTATTTTTAACGTGT-CAA-GTTAcctttacaaattcggtat
gi|22 : A-AGAT-TTTGAATA-TTTGGC--AAA-ATagattttgaatatttggcaaaat
gi|23 : cttttgtggataacgttcactgtttctttttctatttttaacgtgtcaagttTCTCTCT-CTCT-CTC-TCTC-TC-TGAATT-AGCCA---GC--ATTAAA-GGA-CAAAA
gi|3 : cTCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GT--A-TGAA-GGA-TAAAAAGTTT-CTT-TAAAAA--TCACT-T--C-A-A---TATAGGTTTGCGCT--CCGT-GG-TA-T-CAAA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTGT-GTA--------ACT--------AGTAAAATCTTCCACAA-T-TA--CTATGAGAAA-TTATTCGATGAT---TTTCGAAA--CCAA-GCA-CGTATTTTTCTTGGGG------GGTGGGG-----TATCTCCACTTTTGT-GGAT---AACGTTG-CCTGTTTCTTTT----TTT--AACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGAC-GTCC-TAGCTGCT-CCTTTG-TCTATTGAT---GTAACTG-TAA---ACCTG-TTAGAAATGGACCTC-----ATGTTGTGATAA-AGAT-TTTGAATA-TTTGGC--AAA---TAGTA-TT-AAATTT-----TT--------TTTTTTTTGCT-TGTGA--AGAAATTTGGTA-AACG--AACTA-GACCCCCCCCCCCCAAC----TTTAAGAATCAATG-CTACCTGCCTGAAATCTTTCTTCCTCTCCT--TGGC-CGTTCATATAAGTC--TATAAAGCAAT-GCTAGT---AAT--CC-CAGTGAG--AAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-T-A-AA-G-TC-T-CCAAAAAGG---TGTT-TAAGC-T--TTGGATACCTTTA------TAG--GTATACCGCA-TGG-A-TG-C-AG-T---CA-CAGAT-GCC-AA-GAAATTG-TTA-T-AAAAACACTTC-GG-A--------ATT-G-------TGTA---------TT-ATA--CTAT---A-CCC-AT-----AGGATTCA-A--CCTTCTA---TTTATAAA-AAC--ACC-AGGTGTT-AGAC-CCAGATTTGAAACT
gi|4 : CTCT-TCCT-CTC--CTC-TC-TGAAATCAA--ATGCGA--A-TCAG-GA--TAAAAAGTTG-CTT-TAAAAA--TCA-CCT--C-AGA---TACAg
gi|5 : agtcaatcaattctctataaatctttcatgtctcgtttacttatcctttgctcagaagacaggatcatcaacttttaaagtaaaaatcaatataataacagatcttgaaatatctgtcaggtagaaaaaaaggaatacattatctgcgcccaaaatggaatacctaccatttctgtcactgtcctctgatttttctggaaatttccgctcacacatcgtacgaacctttttcattatcttgaattattatttatctatccgtgtaacccaatcacgggaattgtttaaaactgcttattcaattctcagacaccattaaatccgaaatttttgttcgtgcttaaaacctcttgtctatttctattaacatattcctttagtagtaaagttattctttaaaatgttcatcccattccgaattcttaccctatacatatagataaatgaagctatactcttgatacgggtgccaatttattttcaatgtcagtctcatcaattcacatcttcgttgatctacttttgaaattacatgcatgggtttttcgaatattaacgtggcagatgatgacttggtttattccctataaagcaaagattgaaagtcttgcaaacaacttactcttccatttagtagtacatcatttgtgtttatacactccgtatactcactcTCTCTCT-CTCTCCTC-TCTCTTC-TGAAAT-AA--A---GG--A-TAAG-GAA-TCAAAAGTTG-CTT-T-AAAA--TCACCCT--C-A-A---TAT
gi|8 : atatagtcaaaattaaacatttatgtctgtttactttaatctgtcagaacgacaggatcatacaactttataagtagtaaaaataaataaataaacaatcttgaaatatctgtcaggtagaaataaaaggaatacaatattctgcgcacaattggaaatacctaaacatgcatgcacgagttgaaatttcgtcacaatcgtaagaactttatttatttgatatactgtactgtaaacaaaactgaattgtttaaaactgactgtatatacaacactcaataaatcgaatttcaaacatatatgaacggttataaatcgaatatttttgttcggaaagtatttcaatgtacatatctttagtagtaaagttatctctaaaaatgatatccatcgaattttacctatacatataaatcatgtatatttgataaaggggcaatttatttttcatttcaagtatcaattcaccattcgttgatctaatttgaaatacatgcatgggttttgaaatattaacgtgcagatgcatgactaggttattctataaaagaaaatgcgtttcaaaaagaatttgaaaagtcgaaacaatatttatttagtaaggatcattttgtgtttgtgttctatacagtatcGAAAC-AA--A---GGG-A-CAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--CAA-A---TATAGGTTTGCGCTT-CCGTAGG-TA-T-CA-A--TATTTACGCCA-AAATTATTCTGGC------AATATCTAT-GTACAT--GTAACT--------AG-AAATTTTTTCACAATT-TAT-TAATGAGAAA-ATA----AT-----------AAA--CAAA-GCA-CGTAATTTT-TAGGGGT-GAG-GGTGGGG-----TATCTATACTTTTTG-GGAT---AACGTTC-ACTGTTTCTTTT----TTTAAACCATTTAAAA-GTTAG-TATT--TTCGCATGC-AAGT-AAGATA-TTGG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATATAGTCAAAATTAAACATTTATGTCTTGTTTACTTATCTGTCAGAACGACAGGATCATACAACTTTAAAGTACAGTAAAATAAATAAATAAACAATTCTTGAACATATCTGTCCAGGTTAGAAATAAAAGGAATACAATATTCTCGCGTCACAATTGGAAAAACCTAAACATGCATGCACGAGTTGAAATTTTTTCACAATCGCTTAAGAACTTTTATTTATTTGTTATATCGTTACTGTAACAAACTGAATTGGTTTAAAACTGCTTAGTATAACACACCATTAAATCGAAATTAAACATATATTGATACGGTTTATAAATCGAATATTTTTGTTCGGAAAATGTATTTCAATGTACATAATCTTTAGAGTAAAGTTATTCTCTAAAAAGATATCCATCGAAATTTTTACCATATCATATAATTATGTATATTTTGATATAAAGGGGCAAATTTATTTTTCATTTCAATATCAATTCACATTCGTTGATCTAAGTTTGAAATTACATTTGATGGGTTTTTTGAATATTAACGTGCATGATGATGACTAGGTTATTCTATAAAAGAAAACTGCGTTTCAAAAGAATTGAAAGTCGAAACAGATATTCATTTAGTAAGGATCATTTGGTTTCTATACA
Unaligned ( gi|7 ): ATAGTCAAATTTAAACATTTATTGTCTCGTTTTAGCGTGTGATGTCGTGTCAGACCACGACAGGGTCACTACAACTGGGTTTAAAGTAAAAAAAGAAACTATTTTTTATAAAATCCCTTGAAATTTATATGCTGTCAGGGTAGCAAATTAAAAGGAGGAGGGGTGACGAATGTATTCTGCGCGACAAATGGAACATACCTACATGCATGCACGAGTTTTGAAATTTCTGTCCACGAACTCGTAGAACTTTTATTTAATTTGAAGTATATGTTACTGGTAACACAAACTGAATTGTTTTAAAACTGCTTTAGGTACTAACACACCACAATAAATCGAAATTTCAAACACTATATGATGTACCTGTGTATAAATCGGAATATTTTTGCTTCGGTAAACAATGTATGGTTCAATG
Unaligned ( gi|9 ): AAATAAAAGAAATACAATATTCTGCACACAAATGGAAATATATCTACATCCATGCATGAGTTAAAATTTTGTCACATTGAATCGTGAATTTTTTTATTTATTCTACATTCAACACACCAGTAAATTGAAATTTCAAATATATATATGCTATGGTTATAAATCAAATATTTTTGTTTGGAAAATGTATGTATTTCAATGTACACCTCTTATCCGTTGAATTTTACCTGTACATCTGTATATTCGATAAAAGGGCAATTTATCTTT
Unaligned ( gi|15 ): GAGAGAAACTGCGTTTTAACAAGGAATTTTGAAAGCGAAACAGATATTCAGTTTAGTAAGGGATCATTTTGGGGGTGGTTACTATAGCAGTTAGTTACTCTCTCTCTCGTCCTCGTCTCGTCT
Unaligned ( gi|17 ): ACGTGCAAATGATAACTTATAGTTCTTTCTTTATGAAAGAAAAATGTGGTTCAAAAGAATTTGAAAGTGGAAATATTTGTTAACTTTAGTAAGGATCATTTGGTGTT
Unaligned ( gi|19 ): ATGTACATATCTTTAGTAGTAAAGTTATACTCTAAAAGATATCCATCGAATTTTACCTAATATACGTATAAATTATGTATATTTGATAAAGGGGCA
Unaligned ( gi|20 ): GGATCATACAAGTTTTAAAATAAAAAAAAAATAATAAAAAATCTTGAAATATCTGTTAGGTAGAAATAAAAGGAATACAATATTCTG
Alignments
lowQualScore : 1 111 11 111 11 1 1 111 1111 1 1 1 1 333333333 1 4444444444444444 111 11 1 66666666666666666 11 1 1 11 1 22222 111 1 1111 11 1 1 1 111 1 111 1 11 1 2 888888888888888888888 1 111 1 11 11 11 2222 111 11 1 1 22 22 222 111 11 11111 1111 1111 1 1 111 111 1 666666666 111 11111 11 1 11 11111111 4444444444444444444444444444 1111111
lowQualScore : 6 5 6 6 6 6 1 77 000 33 5 5 5 6 6 99 1 99 666 111 3 22 0 0 111 5555 0 0 0 0 555555555 0 2 7777777777777777 3 1 777 66 9 0 88888888888888888 33 0 0 2 33 0 55555 3 8 444 6 0 7777 77 8 8 0 11 0 8 8 3 0 5 0 777 0 777 3 0 00 3 0 3 0 6 6 3 99 88 0 8 8 999999999999999999999 0 777 0 33 33 2 3 33 1111 7 6 7 7 333 33 7 3 7 7 3 00 00 333 444 33 55555 0000 3333 5 5 1 1 5 1 333 000 1 5 5 77 000000000 99 22 6 222 6 6 11111 6 2 77 5 1 0 5 5 5 11 5 88888888 5 1111111111111111111111111111 888 55 2222222 5 66 1 2 4 77 6 6 6 1
lowQualScore : . . . . . . . .. ... .. . . . . . .. . .. ... ... . .. . . ... .... . . . . ......... . . ................ . . ... .. . . ................. .. . . . .. . ..... . . ... . . .... .. . . . .. . . . . . . . ... . ... . . .. . . . . . . . .. .. . . . ..................... . ... . .. .. . . .. .... . . . . ... .. . . . . . .. .. ... ... .. ..... .... .... . . . . . . ... ... . . . .. ......... .. .. . ... . . ..... . . .. . . . . . . .. . ........ . ............................ ... .. ....... . .. . . . .. . . . .
lowQualScore : 7 7 7 7 7 7 4 99 000 66 7 7 7 7 7 22 0 22 888 777 2 00 0 0 000 5555 0 0 0 0 222222222 0 5 2222222222222222 2 0 000 55 8 0 22222222222222222 88 0 0 5 22 0 00000 2 0 000 0 8 0000 00 0 0 8 00 8 0 0 2 0 0 0 000 0 555 2 0 88 0 2 2 0 7 7 7 22 33 8 0 0 888888888888888888888 0 000 0 88 00 5 0 88 2222 3 7 3 3 000 33 3 3 3 3 3 77 00 777 888 33 88888 1111 7777 7 7 4 4 7 4 999 000 4 7 7 99 000000000 22 00 7 555 7 7 88888 7 5 22 7 4 5 0 0 0 99 0 11111111 0 6666666666666666666666666666 888 22 8888888 0 55 0 2 5 99 7 7 7 4
consensus : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CANA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTAT-GTACAT--A-AACT--------AGTAAATTTTTCNACAA-T-TAC-TAATGAGAAA-TTATTCGATG-C---TTTCGAAA--CAAA-GCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATA-TTTGGC--AAA-ATTAGCA-TT-TAATTT-GGG-GC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTGAAATCTTTCTTCCTCTCCTTGTGGCGCGTTCGTAT-AGTTTATATAAATCAAT-GCTAGT-TAAATC-CC-CGGTAAG--NAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC-T--TTGGATA---CCT-TATAG--GTATACCNNA-TGG-A-TG-C-AG-T---CA-CAGAC-GCC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTT-ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
Reference ( family-2061 ) : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CANA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTAT-GTACAT--A-AACT--------AGTAAATTTTTCNACAA-T-TAC-TAATGAGAAA-TTATTCGATG-C---TTTCGAAA--CAAA-GCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATATTTTGGC--AAA-ATTAGCA-TT-TAATTT-GGG-GC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTGAAATCTTTCTTCCTCTCCTTGTGGCGCGTTCGTAT-AGTTTATATAAATCAAT-GCTAGT-TAAATC-CC-CGGTAAG--NAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC-T--TTGGATA---C-----TAG--GTATACCNNA-TGG-A-TG-C-AG-T---CA-CAGAC-GCC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTT-ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
gi|1 : CTCTGCGCT-CTCGTGTC-TCGTGAAATTAA--A---GGGGA-TAAGCGAAGTAAAAAGTTGGCTTGTAAAAAAGTCATTCTGTC-G-AGGATATAGGTT-GCGCTTCGCGT-GGGTAGTGCAGAAGTG-TGACG-CAGAAATTA-TTC-GTGGGCAGAATATCGATTGTACATTGA-AGCTGAGGTGAGAGTGTGTGTTGCGACGA-GATACGTATTGAGAAAATTATTCGATG-CCTTTTTCGAAAACCAAAAGCA-CGTATTTTTCTTGGGGTGGAGTGGTGGGAGGCGTTATCTAT-CTTTTGTGGGATCAAGACGTTCAACTG--TCTCTT----TTTTTAACGTGT-AAAGGTTAGTTATTTGTCCGCATGCAAAGTGAAGATATTTGGTGACTGTCCTTAGCTGCT-CCTGTGTTCTATTGATTGAGTAACTGATAGCACACCTGCTTAG-GATTGATCCCATATGATGTAGTGAGAAGAGATGTTTGAATATTTGAGCCAAGA-GTTAGCA-TTGTAATTT-GGGCGC--------GGG-GGGGACTATGTC---AGAATTGCAGTAGAGCGAAAACTACAACCCCCACCCCC--ACCCCACTTAAG-ATCAGAGCTAGCGTGCCTGAAATCTT--TTTCTCTCCGTGTGGCGCGT--GTAT-AGTTTAT---AATCAATGGCTGAG-TAAGTCGCCGCGGTAAGCAGAAACTGTGCATA----GTTAA---CA--ACTT-ATTA-TAA-AA-GCTCTT-CCAAACAAGCGCTG-TCTAAGC-TTGTTGGATA---CCTGTATAGGCGTATACCGCA-TGG-A-TG-C-A--T---CA-CAGG--GCCGAGAGAGAGTG-TGAGTGCAAAACACTG--GG-A--------ATTGG------TGGTAGTT---TATTTGATAGCCTATAGCACGCC-ATGAGGCAGAGTTCAGACCCTGGTTAAGTTGTAT-AAGAATGAGCT-AGATGTTGAGAC-CTTAGTTTG
gi|10 : G-AAT----ATGAG---CA--AACT-GTTA-TCACAA-G-TC-TTCCAAAACGA---TG-T-TAAGC-T--TTGAATATCCC-----TAG--GTACATCTTACTGG-AGTGCC-AGAC---CC-CACAC-AAC-AG-AAAATAG-CTA-T-CAAAACACAT--GG-ATCTAGACCATT-AGAACT-TTGTA-T------TTT-A-A---TAT---ACCTT-AG-----AGGA---A-ACCACTTC-AATTTTTATGAAGAAcatgactgac
gi|11 : agaaaAG--TAAACTGT--ATT------TG----------TT-ATCA-CAACAA-G-TT-TTCCAAAAAGG---TG-T-TAAGC-T--TTGGATACCTC-----TAG----ATACCTGA-CGGCA-CG-CGAG-TGTACA-CA------C-AG-GAAATAG-TTA-T-CAAAACACTT--GA-A--------TTT-AGACCATTTGAA-CTTTGTATTT--TA-CATAT---ACCCT-A--------GATTGA-ACCACTTC-AATTTTTTTTAATAAC--aaaatccaccagaaaa
gi|12 : A---CA--A-TTTATTA-TAA-AA-GGTC-T-CCAAAAAGG---TGGT-TAAGC-T--TTGGATA---CCTGTATAG--GTATACCGTA-TGG-A-TG-C-AG-T---CAACAGATTGCC-AG-GAA----------------CACTG--GG-A--------AT--G------T-GTA-TTA--TATTT-ATA-CCTAT---ACCC--AT-----AGGATCCA-ACCCCTTCT-ATTGTTATAAGGAAC--ACT-A-GTGTT-AGA--CCAGATTTGATACTccctccataacaaagc
gi|13 : TAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGATGACTGTCC-TAGCTGCTCCCTTTG-TCTATTAAT--AGTAACTT-TAA---ACC---------------CCCATAT-ATGTAGTGAGAA-AGAT-TTTCAATA-TTTGG---AAA-ATTAGCATTT-TAATTT-
gi|14 : CC-AGAGAAATTGCTTA-T-AAGAGCACCTTGGG-A--------ATT-G-------TGTG-AT---TATAC-GT--CCTTG---ACCCCGAT------GGATTCA-ACCTTTCCT-ATTGTTATAAAAAGC--ACTAAGGTGTT-AGACTCCAGATTTGAA
gi|16 : gatggaATTG-TTA-T-CAAAACACTT--GGGA--------ATT-G------T-GTA-GT---------ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACGCCTTCTAATTCTTATAA--AAC--ACT-AGGTGAT-AGAC-CCAGATTTGAAACTctg
gi|18 : A-AGAT-TTTGAATA-TTTGGC--AAA-AT----A-TT-TTTTTT------------------TTTGGGCT-TGTCA--AGAAATTTAGTA-AACG--GACTATGAC-----CCCCC--AT----TTTAAga
gi|2 : TCTCTCT-C-CT-CTC-TCT--TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TCAAAAGTTG-CTT-TAAAA---TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CATA--TA-TTACG-CA-AAATTA-TCT--C------AATATCTAT-GTACATGTA-AACT--------AGTAAATTTTTCAACAA-T-TA--TAATGAGAAA-TTAT----------------AAA--CAAA-GCAACGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTCCACTGTTTCTTTT----TTTTTAACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTA-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTG-ATATTTTGGC--AAATATTAGCA-TT-TAATTTGGGG-GCAGGGGAGGGGGTGGGGGCT-TGTCAAGAGAAATTTAGTA-GAGG--AACTAC-ACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTG-AATCTTTCTTCCTCTCCTTG-GGCG-GTTCGTAT-AGTTTATATAAATCAAT-GCTAGTATAAATC-CC---GTAAG--CAAACTGT--ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC-T------GTA---------TAG--GTATACCCGA-TGG---TG-C-AG-T---CA-CAGAT-GCC-AG-AAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTTGATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTGTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGATACTtcgcaaagctctgctgaa
gi|21 : TGTG-ATTTTATATTAAGTACATCA-TT-ATTAATAA-AAAG-TCAT-CTCAAAAGG---TG-T-TAAGCTT--TTGGATA---C-----
gi|22 : CTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTTTCTATTTTTAACGTGT-CAA-GTTActttacaaattcggtat
gi|22 : A-AGAT-TTTGAATA-TTTGGC--AAA-ATagattttgaatatttggcaaaat
gi|23 : cttttgtggataacgttcactgtttctttttctatttttaacgtgtcaagttTCTCTCT-CTCT-CTC-TCTC-TC-TGAATT-AGCCA---GC--ATTAAA-GGA-CAAAA
gi|3 : cTCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GT--A-TGAA-GGA-TAAAAAGTTT-CTT-TAAAAA--TCACT-T--C-A-A---TATAGGTTTGCGCT--CCGT-GG-TA-T-CAAA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTGT-GTA--------ACT--------AGTAAAATCTTCCACAA-T-TAC-TA-TGAGAAA-TTATTCGATGAT---TTTCGAAA--CCAA-GCA-CGTATTTTTCTTGGGG------GGTGGGG-----TATCTCCACTTTTGT-GGAT---AACGTTG-CCTGTTTCTTTT----TTT--AACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGAC-GTCC-TAGCTGCT-CCTTTG-TCTATTGAT---GTAACTG-TAA---ACCTG-TTAGAAATGGACCTC-----ATGTTGTGATAA-AGAT-TTTGAATA-TTTGGC--AAA---TAGTA-TT-AAATTT-----TT--------TTTTTTTTGCT-TGTGA--AGAAATTTGGTA-AACG--AACTA-GACCCCCCCCCCCCAAC----TTTAAGAATCAATG-CTACCTGCCTGAAATCTTTCTTCCTCTCCT--TGGC-CGTTCATATAAGTC--TATAAAGCAAT-GCTAGT---AAT--CC-CAGTGAG--AAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-T-A-AA-G-TC-T-CCAAAAAGG---TGTT-TAAGC-T--TTGGATA---CCTTTATAG--GTATACCGCA-TGG-A-TG-C-AG-T---CA-CAGAT-GCC-AA-GAAATTG-TTA-T-AAAAACACTTC-GG-A--------ATT-G-------TGTA---------TT-ATA--CTAT---A-CCC-AT-----AGGATTCA-A--CCTTCTA---TTTATAAA-AAC--ACC-AGGTGTT-AGAC-CCAGATTTGAAACT
gi|4 : CTCT-TCCT-CTC--CTC-TC-TGAAATCAA--ATGCGA--A-TCAG-GA--TAAAAAGTTG-CTT-TAAAAA--TCA-CCT--C-AGA---TACAg
gi|5 : agtcaatcaattctctataaatctttcatgtctcgtttacttatcctttgctcagaagacaggatcatcaacttttaaagtaaaaatcaatataataacagatcttgaaatatctgtcaggtagaaaaaaaggaatacattatctgcgcccaaaatggaatacctaccatttctgtcactgtcctctgatttttctggaaatttccgctcacacatcgtacgaacctttttcattatcttgaattattatttatctatccgtgtaacccaatcacgggaattgtttaaaactgcttattcaattctcagacaccattaaatccgaaatttttgttcgtgcttaaaacctcttgtctatttctattaacatattcctttagtagtaaagttattctttaaaatgttcatcccattccgaattcttaccctatacatatagataaatgaagctatactcttgatacgggtgccaatttattttcaatgtcagtctcatcaattcacatcttcgttgatctacttttgaaattacatgcatgggtttttcgaatattaacgtggcagatgatgacttggtttattccctataaagcaaagattgaaagtcttgcaaacaacttactcttccatttagtagtacatcatttgtgtttatacactccgtatactcactcTCTCTCT-CTCTCCTC-TCTCTTC-TGAAAT-AA--A---GG--A-TAAG-GAA-TCAAAAGTTG-CTT-T-AAAA--TCACCCT--C-A-A---TAT
gi|8 : atatagtcaaaattaaacatttatgtctgtttactttaatctgtcagaacgacaggatcatacaactttataagtagtaaaaataaataaataaacaatcttgaaatatctgtcaggtagaaataaaaggaatacaatattctgcgcacaattggaaatacctaaacatgcatgcacgagttgaaatttcgtcacaatcgtaagaactttatttatttgatatactgtactgtaaacaaaactgaattgtttaaaactgactgtatatacaacactcaataaatcgaatttcaaacatatatgaacggttataaatcgaatatttttgttcggaaagtatttcaatgtacatatctttagtagtaaagttatctctaaaaatgatatccatcgaattttacctatacatataaatcatgtatatttgataaaggggcaatttatttttcatttcaagtatcaattcaccattcgttgatctaatttgaaatacatgcatgggttttgaaatattaacgtgcagatgcatgactaggttattctataaaagaaaatgcgtttcaaaaagaatttgaaaagtcgaaacaatatttatttagtaaggatcattttgtgtttgtgttctatacagtatcGAAAC-AA--A---GGG-A-CAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--CAA-A---TATAGGTTTGCGCTT-CCGTAGG-TA-T-CA-A--TATTTACGCCA-AAATTATTCTGGC------AATATCTAT-GTACAT--GTAACT--------AG-AAATTTTTTCACAATT-TAT-TAATGAGAAA-ATA----AT-----------AAA--CAAA-GCA-CGTAATTTT-TAGGGGT-GAG-GGTGGGG-----TATCTATACTTTTTG-GGAT---AACGTTC-ACTGTTTCTTTT----TTTAAACCATTTAAAA-GTTAG-TATT--TTCGCATGC-AAGT-AAGATA-TTGG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATATAGTCAAAATTAAACATTTATGTCTTGTTTACTTATCTGTCAGAACGACAGGATCATACAACTTTAAAGTACAGTAAAATAAATAAATAAACAATTCTTGAACATATCTGTCCAGGTTAGAAATAAAAGGAATACAATATTCTCGCGTCACAATTGGAAAAACCTAAACATGCATGCACGAGTTGAAATTTTTTCACAATCGCTTAAGAACTTTTATTTATTTGTTATATCGTTACTGTAACAAACTGAATTGGTTTAAAACTGCTTAGTATAACACACCATTAAATCGAAATTAAACATATATTGATACGGTTTATAAATCGAATATTTTTGTTCGGAAAATGTATTTCAATGTACATAATCTTTAGAGTAAAGTTATTCTCTAAAAAGATATCCATCGAAATTTTTACCATATCATATAATTATGTATATTTTGATATAAAGGGGCAAATTTATTTTTCATTTCAATATCAATTCACATTCGTTGATCTAAGTTTGAAATTACATTTGATGGGTTTTTTGAATATTAACGTGCATGATGATGACTAGGTTATTCTATAAAAGAAAACTGCGTTTCAAAAGAATTGAAAGTCGAAACAGATATTCATTTAGTAAGGATCATTTGGTTTCTATACA
Unaligned ( gi|7 ): ATAGTCAAATTTAAACATTTATTGTCTCGTTTTAGCGTGTGATGTCGTGTCAGACCACGACAGGGTCACTACAACTGGGTTTAAAGTAAAAAAAGAAACTATTTTTTATAAAATCCCTTGAAATTTATATGCTGTCAGGGTAGCAAATTAAAAGGAGGAGGGGTGACGAATGTATTCTGCGCGACAAATGGAACATACCTACATGCATGCACGAGTTTTGAAATTTCTGTCCACGAACTCGTAGAACTTTTATTTAATTTGAAGTATATGTTACTGGTAACACAAACTGAATTGTTTTAAAACTGCTTTAGGTACTAACACACCACAATAAATCGAAATTTCAAACACTATATGATGTACCTGTGTATAAATCGGAATATTTTTGCTTCGGTAAACAATGTATGGTTCAATG
Unaligned ( gi|9 ): AAATAAAAGAAATACAATATTCTGCACACAAATGGAAATATATCTACATCCATGCATGAGTTAAAATTTTGTCACATTGAATCGTGAATTTTTTTATTTATTCTACATTCAACACACCAGTAAATTGAAATTTCAAATATATATATGCTATGGTTATAAATCAAATATTTTTGTTTGGAAAATGTATGTATTTCAATGTACACCTCTTATCCGTTGAATTTTACCTGTACATCTGTATATTCGATAAAAGGGCAATTTATCTTT
Unaligned ( gi|15 ): GAGAGAAACTGCGTTTTAACAAGGAATTTTGAAAGCGAAACAGATATTCAGTTTAGTAAGGGATCATTTTGGGGGTGGTTACTATAGCAGTTAGTTACTCTCTCTCTCGTCCTCGTCTCGTCT
Unaligned ( gi|17 ): ACGTGCAAATGATAACTTATAGTTCTTTCTTTATGAAAGAAAAATGTGGTTCAAAAGAATTTGAAAGTGGAAATATTTGTTAACTTTAGTAAGGATCATTTGGTGTT
Unaligned ( gi|19 ): ATGTACATATCTTTAGTAGTAAAGTTATACTCTAAAAGATATCCATCGAATTTTACCTAATATACGTATAAATTATGTATATTTGATAAAGGGGCA
Unaligned ( gi|20 ): GGATCATACAAGTTTTAAAATAAAAAAAAAATAATAAAAAATCTTGAAATATCTGTTAGGTAGAAATAAAAGGAATACAATATTCTG
Alignments
lowQualScore : 1 111 11 111 11 1 1 111 1111 1 1 1 1 333333333 1 4444444444444444 111 11 1 66666666666666666 11 1 1 11 1 22222 111 1 1111 11 1 1 1 111 1 111 1 11 1 888888888888888888888 1 111 1 11 11 11 2222 111 11 1 1 22 22 222 111 11 11111 1111 1111 1 1 111 111 1 1111 11111 111 11111 11 1 11 11111111 4444444444444444444444444444 1111111
lowQualScore : 6 5 6 6 6 6 1 77 000 33 5 5 5 6 6 99 1 99 666 111 3 22 0 0 111 5555 0 0 0 0 555555555 0 2 7777777777777777 3 1 777 66 9 0 88888888888888888 33 0 0 2 33 0 55555 3 8 444 6 0 7777 77 8 8 0 11 0 8 8 3 0 5 0 777 0 777 3 0 00 3 0 3 0 6 6 6 6 99 88 0 8 8 999999999999999999999 0 777 0 33 33 2 3 33 1111 7 6 7 7 333 33 7 3 7 7 3 00 00 333 444 33 55555 0000 3333 5 5 1 1 5 1 333 000 1 5 1111 66666 99 22 6 222 6 6 11111 6 2 77 5 1 0 5 5 5 11 5 88888888 5 1111111111111111111111111111 888 55 2222222 5 66 1 2 4 77 6 6 6 1
lowQualScore : . . . . . . . .. ... .. . . . . . .. . .. ... ... . .. . . ... .... . . . . ......... . . ................ . . ... .. . . ................. .. . . . .. . ..... . . ... . . .... .. . . . .. . . . . . . . ... . ... . . .. . . . . . . . . .. .. . . . ..................... . ... . .. .. . . .. .... . . . . ... .. . . . . . .. .. ... ... .. ..... .... .... . . . . . . ... ... . . .... ..... .. .. . ... . . ..... . . .. . . . . . . .. . ........ . ............................ ... .. ....... . .. . . . .. . . . .
lowQualScore : 7 7 7 7 7 7 4 99 000 66 7 7 7 7 7 22 0 22 888 777 2 00 0 0 000 5555 0 0 0 0 222222222 0 5 2222222222222222 2 0 000 55 8 0 22222222222222222 88 0 0 5 22 0 00000 2 0 000 0 8 0000 00 0 0 8 00 8 0 0 2 0 0 0 000 0 555 2 0 88 0 2 2 0 7 7 7 7 22 33 8 0 0 888888888888888888888 0 000 0 88 00 5 0 88 2222 3 7 3 3 000 33 3 3 3 3 3 77 00 777 888 33 88888 1111 7777 7 7 4 4 7 4 999 000 4 7 6666 33333 22 00 7 555 7 7 88888 7 5 22 7 4 5 0 0 0 99 0 11111111 0 6666666666666666666666666666 888 22 8888888 0 55 0 2 5 99 7 7 7 4
consensus : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CANA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTAT-GTACAT--A-AACT--------AGTAAATTTTTCNACAA-T-TAC-TAATGAGAAA-TTATTCGATG-C---TTTCGAAA--CAAA-GCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATA-TTTG-GC--AAA-ATTAGCA-TT-TAATTT-GGG-GC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTGAAATCTTTCTTCCTCTCCTTGTGGCGCGTTCGTAT-AGTTTATATAAATCAAT-GCTAGT-TAAATC-CC-CGGTAAG--NAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC-T--TTGGATACC-T-TATAG--GTATACCNNA-TGG-A-TG-C-AG-T---CA-CAGAC-GCC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTT-ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
Reference ( family-2061 ) : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CANA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTAT-GTACAT--A-AACT--------AGTAAATTTTTCNACAA-T-TAC-TAATGAGAAA-TTATTCGATG-C---TTTCGAAA--CAAA-GCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATA-TTTG-GC--AAA-ATTAGCA-TT-TAATTT-GGG-GC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTGAAATCTTTCTTCCTCTCCTTGTGGCGCGTTCGTAT-AGTTTATATAAATCAAT-GCTAGT-TAAATC-CC-CGGTAAG--NAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC-T--TTGGATACC-T-TATAG--GTATACCNNA-TGG-A-TG-C-AG-T---CA-CAGAC-GCC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTT-ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
gi|1 : CTCTGCGCT-CTCGTGTC-TCGTGAAATTAA--A---GGGGA-TAAGCGAAGTAAAAAGTTGGCTTGTAAAAAAGTCATTCTGTC-G-AGGATATAGGTT-GCGCTTCGCGT-GGGTAGTGCAGAAGTG-TGACG-CAGAAATTA-TTC-GTGGGCAGAATATCGATTGTACATTGA-AGCTGAGGTGAGAGTGTGTGTTGCGACGA-GATACGTATTGAGAAAATTATTCGATG-CCTTTTTCGAAAACCAAAAGCA-CGTATTTTTCTTGGGGTGGAGTGGTGGGAGGCGTTATCTAT-CTTTTGTGGGATCAAGACGTTCAACTG--TCTCTT----TTTTTAACGTGT-AAAGGTTAGTTATTTGTCCGCATGCAAAGTGAAGATATTTGGTGACTGTCCTTAGCTGCT-CCTGTGTTCTATTGATTGAGTAACTGATAGCACACCTGCTTAG-GATTGATCCCATATGATGTAGTGAGAAGAGATGTTTGAATA-TTTGAGCCAAGA-GTTAGCA-TTGTAATTT-GGGCGC--------GGG-GGGGACTATGTC---AGAATTGCAGTAGAGCGAAAACTACAACCCCCACCCCC--ACCCCACTTAAG-ATCAGAGCTAGCGTGCCTGAAATCTT--TTTCTCTCCGTGTGGCGCGT--GTAT-AGTTTAT---AATCAATGGCTGAG-TAAGTCGCCGCGGTAAGCAGAAACTGTGCATA----GTTAA---CA--ACTT-ATTA-TAA-AA-GCTCTT-CCAAACAAGCGCTG-TCTAAGC-TTGTTGGATACC-TGTATAGGCGTATACCGCA-TGG-A-TG-C-A--T---CA-CAGG--GCCGAGAGAGAGTG-TGAGTGCAAAACACTG--GG-A--------ATTGG------TGGTAGTT---TATTTGATAGCCTATAGCACGCC-ATGAGGCAGAGTTCAGACCCTGGTTAAGTTGTAT-AAGAATGAGCT-AGATGTTGAGAC-CTTAGTTTG
gi|10 : G-AAT----ATGAG---CA--AACT-GTTA-TCACAA-G-TC-TTCCAAAACGA---TG-T-TAAGC-T--TTGAATATC-C-C-TAG--GTACATCTTACTGG-AGTGCC-AGAC---CC-CACAC-AAC-AG-AAAATAG-CTA-T-CAAAACACAT--GG-ATCTAGACCATT-AGAACT-TTGTA-T------TTT-A-A---TAT---ACCTT-AG-----AGGA---A-ACCACTTC-AATTTTTATGAAGAAcatgactgac
gi|11 : agaaaAG--TAAACTGT--ATT------TG----------TT-ATCA-CAACAA-G-TT-TTCCAAAAAGG---TG-T-TAAGC-T--TTGGATACC-T-C-TAG----ATACCTGA-CGGCA-CG-CGAG-TGTACA-CA------C-AG-GAAATAG-TTA-T-CAAAACACTT--GA-A--------TTT-AGACCATTTGAA-CTTTGTATTT--TA-CATAT---ACCCT-A--------GATTGA-ACCACTTC-AATTTTTTTTAATAAC--aaaatccaccagaaaa
gi|12 : A---CA--A-TTTATTA-TAA-AA-GGTC-T-CCAAAAAGG---TGGT-TAAGC-T--TTGGATACC-TGTATAG--GTATACCGTA-TGG-A-TG-C-AG-T---CAACAGATTGCC-AG-GAA----------------CACTG--GG-A--------AT--G------T-GTA-TTA--TATTT-ATA-CCTAT---ACCC--AT-----AGGATCCA-ACCCCTTCT-ATTGTTATAAGGAAC--ACT-A-GTGTT-AGA--CCAGATTTGATACTccctccataacaaagc
gi|13 : TAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGATGACTGTCC-TAGCTGCTCCCTTTG-TCTATTAAT--AGTAACTT-TAA---ACC---------------CCCATAT-ATGTAGTGAGAA-AGAT-TTTCAATA-TTTG-G---AAA-ATTAGCATTT-TAATTT-
gi|14 : CC-AGAGAAATTGCTTA-T-AAGAGCACCTTGGG-A--------ATT-G-------TGTG-AT---TATAC-GT--CCTTG---ACCCCGAT------GGATTCA-ACCTTTCCT-ATTGTTATAAAAAGC--ACTAAGGTGTT-AGACTCCAGATTTGAA
gi|16 : gatggaATTG-TTA-T-CAAAACACTT--GGGA--------ATT-G------T-GTA-GT---------ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACGCCTTCTAATTCTTATAA--AAC--ACT-AGGTGAT-AGAC-CCAGATTTGAAACTctg
gi|18 : A-AGAT-TTTGAATA-TTTG-GC--AAA-AT----A-TT-TTTTTT------------------TTTGGGCT-TGTCA--AGAAATTTAGTA-AACG--GACTATGAC-----CCCCC--AT----TTTAAga
gi|2 : TCTCTCT-C-CT-CTC-TCT--TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TCAAAAGTTG-CTT-TAAAA---TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CATA--TA-TTACG-CA-AAATTA-TCT--C------AATATCTAT-GTACATGTA-AACT--------AGTAAATTTTTCAACAA-T-TA--TAATGAGAAA-TTAT----------------AAA--CAAA-GCAACGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTCCACTGTTTCTTTT----TTTTTAACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTA-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTG-ATATTTTG-GC--AAATATTAGCA-TT-TAATTTGGGG-GCAGGGGAGGGGGTGGGGGCT-TGTCAAGAGAAATTTAGTA-GAGG--AACTAC-ACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTG-AATCTTTCTTCCTCTCCTTG-GGCG-GTTCGTAT-AGTTTATATAAATCAAT-GCTAGTATAAATC-CC---GTAAG--CAAACTGT--ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC-----TG---------TATAG--GTATACCCGA-TGG---TG-C-AG-T---CA-CAGAT-GCC-AG-AAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTTGATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTGTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGATACTtcgcaaagctctgctgaa
gi|21 : TGTG-ATTTTATATTAAGTACATCA-TT-ATTAATAA-AAAG-TCAT-CTCAAAAGG---TG-T-TAAGCTT--TTGGATACC-T-T
gi|22 : CTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTTTCTATTTTTAACGTGT-CAA-GTTAtacaaattcggtat
gi|22 : A-AGAT-TTTGAATA-TTTG-GC--AAA-ATagattttgaatatttggcaaaat
gi|23 : cttttgtggataacgttcactgtttctttttctatttttaacgtgtcaagttTCTCTCT-CTCT-CTC-TCTC-TC-TGAATT-AGCCA---GC--ATTAAA-GGA-CAAAA
gi|3 : cTCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GT--A-TGAA-GGA-TAAAAAGTTT-CTT-TAAAAA--TCACT-T--C-A-A---TATAGGTTTGCGCT--CCGT-GG-TA-T-CAAA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTGT-GTA--------ACT--------AGTAAAATCTTCCACAA-T-TAC-TA-TGAGAAA-TTATTCGATGAT---TTTCGAAA--CCAA-GCA-CGTATTTTTCTTGGGG------GGTGGGG-----TATCTCCACTTTTGT-GGAT---AACGTTG-CCTGTTTCTTTT----TTT--AACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGAC-GTCC-TAGCTGCT-CCTTTG-TCTATTGAT---GTAACTG-TAA---ACCTG-TTAGAAATGGACCTC-----ATGTTGTGATAA-AGAT-TTTGAATA-TTTG-GC--AAA---TAGTA-TT-AAATTT-----TT--------TTTTTTTTGCT-TGTGA--AGAAATTTGGTA-AACG--AACTA-GACCCCCCCCCCCCAAC----TTTAAGAATCAATG-CTACCTGCCTGAAATCTTTCTTCCTCTCCT--TGGC-CGTTCATATAAGTC--TATAAAGCAAT-GCTAGT---AAT--CC-CAGTGAG--AAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-T-A-AA-G-TC-T-CCAAAAAGG---TGTT-TAAGC-T--TTGGATACCTT-TATAG--GTATACCGCA-TGG-A-TG-C-AG-T---CA-CAGAT-GCC-AA-GAAATTG-TTA-T-AAAAACACTTC-GG-A--------ATT-G-------TGTA---------TT-ATA--CTAT---A-CCC-AT-----AGGATTCA-A--CCTTCTA---TTTATAAA-AAC--ACC-AGGTGTT-AGAC-CCAGATTTGAAACT
gi|4 : CTCT-TCCT-CTC--CTC-TC-TGAAATCAA--ATGCGA--A-TCAG-GA--TAAAAAGTTG-CTT-TAAAAA--TCA-CCT--C-AGA---TACAg
gi|5 : agtcaatcaattctctataaatctttcatgtctcgtttacttatcctttgctcagaagacaggatcatcaacttttaaagtaaaaatcaatataataacagatcttgaaatatctgtcaggtagaaaaaaaggaatacattatctgcgcccaaaatggaatacctaccatttctgtcactgtcctctgatttttctggaaatttccgctcacacatcgtacgaacctttttcattatcttgaattattatttatctatccgtgtaacccaatcacgggaattgtttaaaactgcttattcaattctcagacaccattaaatccgaaatttttgttcgtgcttaaaacctcttgtctatttctattaacatattcctttagtagtaaagttattctttaaaatgttcatcccattccgaattcttaccctatacatatagataaatgaagctatactcttgatacgggtgccaatttattttcaatgtcagtctcatcaattcacatcttcgttgatctacttttgaaattacatgcatgggtttttcgaatattaacgtggcagatgatgacttggtttattccctataaagcaaagattgaaagtcttgcaaacaacttactcttccatttagtagtacatcatttgtgtttatacactccgtatactcactcTCTCTCT-CTCTCCTC-TCTCTTC-TGAAAT-AA--A---GG--A-TAAG-GAA-TCAAAAGTTG-CTT-T-AAAA--TCACCCT--C-A-A---TAT
gi|8 : atatagtcaaaattaaacatttatgtctgtttactttaatctgtcagaacgacaggatcatacaactttataagtagtaaaaataaataaataaacaatcttgaaatatctgtcaggtagaaataaaaggaatacaatattctgcgcacaattggaaatacctaaacatgcatgcacgagttgaaatttcgtcacaatcgtaagaactttatttatttgatatactgtactgtaaacaaaactgaattgtttaaaactgactgtatatacaacactcaataaatcgaatttcaaacatatatgaacggttataaatcgaatatttttgttcggaaagtatttcaatgtacatatctttagtagtaaagttatctctaaaaatgatatccatcgaattttacctatacatataaatcatgtatatttgataaaggggcaatttatttttcatttcaagtatcaattcaccattcgttgatctaatttgaaatacatgcatgggttttgaaatattaacgtgcagatgcatgactaggttattctataaaagaaaatgcgtttcaaaaagaatttgaaaagtcgaaacaatatttatttagtaaggatcattttgtgtttgtgttctatacagtatcGAAAC-AA--A---GGG-A-CAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--CAA-A---TATAGGTTTGCGCTT-CCGTAGG-TA-T-CA-A--TATTTACGCCA-AAATTATTCTGGC------AATATCTAT-GTACAT--GTAACT--------AG-AAATTTTTTCACAATT-TAT-TAATGAGAAA-ATA----AT-----------AAA--CAAA-GCA-CGTAATTTT-TAGGGGT-GAG-GGTGGGG-----TATCTATACTTTTTG-GGAT---AACGTTC-ACTGTTTCTTTT----TTTAAACCATTTAAAA-GTTAG-TATT--TTCGCATGC-AAGT-AAGATA-TTGG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATATAGTCAAAATTAAACATTTATGTCTTGTTTACTTATCTGTCAGAACGACAGGATCATACAACTTTAAAGTACAGTAAAATAAATAAATAAACAATTCTTGAACATATCTGTCCAGGTTAGAAATAAAAGGAATACAATATTCTCGCGTCACAATTGGAAAAACCTAAACATGCATGCACGAGTTGAAATTTTTTCACAATCGCTTAAGAACTTTTATTTATTTGTTATATCGTTACTGTAACAAACTGAATTGGTTTAAAACTGCTTAGTATAACACACCATTAAATCGAAATTAAACATATATTGATACGGTTTATAAATCGAATATTTTTGTTCGGAAAATGTATTTCAATGTACATAATCTTTAGAGTAAAGTTATTCTCTAAAAAGATATCCATCGAAATTTTTACCATATCATATAATTATGTATATTTTGATATAAAGGGGCAAATTTATTTTTCATTTCAATATCAATTCACATTCGTTGATCTAAGTTTGAAATTACATTTGATGGGTTTTTTGAATATTAACGTGCATGATGATGACTAGGTTATTCTATAAAAGAAAACTGCGTTTCAAAAGAATTGAAAGTCGAAACAGATATTCATTTAGTAAGGATCATTTGGTTTCTATACA
Unaligned ( gi|7 ): ATAGTCAAATTTAAACATTTATTGTCTCGTTTTAGCGTGTGATGTCGTGTCAGACCACGACAGGGTCACTACAACTGGGTTTAAAGTAAAAAAAGAAACTATTTTTTATAAAATCCCTTGAAATTTATATGCTGTCAGGGTAGCAAATTAAAAGGAGGAGGGGTGACGAATGTATTCTGCGCGACAAATGGAACATACCTACATGCATGCACGAGTTTTGAAATTTCTGTCCACGAACTCGTAGAACTTTTATTTAATTTGAAGTATATGTTACTGGTAACACAAACTGAATTGTTTTAAAACTGCTTTAGGTACTAACACACCACAATAAATCGAAATTTCAAACACTATATGATGTACCTGTGTATAAATCGGAATATTTTTGCTTCGGTAAACAATGTATGGTTCAATG
Unaligned ( gi|9 ): AAATAAAAGAAATACAATATTCTGCACACAAATGGAAATATATCTACATCCATGCATGAGTTAAAATTTTGTCACATTGAATCGTGAATTTTTTTATTTATTCTACATTCAACACACCAGTAAATTGAAATTTCAAATATATATATGCTATGGTTATAAATCAAATATTTTTGTTTGGAAAATGTATGTATTTCAATGTACACCTCTTATCCGTTGAATTTTACCTGTACATCTGTATATTCGATAAAAGGGCAATTTATCTTT
Unaligned ( gi|15 ): GAGAGAAACTGCGTTTTAACAAGGAATTTTGAAAGCGAAACAGATATTCAGTTTAGTAAGGGATCATTTTGGGGGTGGTTACTATAGCAGTTAGTTACTCTCTCTCTCGTCCTCGTCTCGTCT
Unaligned ( gi|17 ): ACGTGCAAATGATAACTTATAGTTCTTTCTTTATGAAAGAAAAATGTGGTTCAAAAGAATTTGAAAGTGGAAATATTTGTTAACTTTAGTAAGGATCATTTGGTGTT
Unaligned ( gi|19 ): ATGTACATATCTTTAGTAGTAAAGTTATACTCTAAAAGATATCCATCGAATTTTACCTAATATACGTATAAATTATGTATATTTGATAAAGGGGCA
Unaligned ( gi|20 ): GGATCATACAAGTTTTAAAATAAAAAAAAAATAATAAAAAATCTTGAAATATCTGTTAGGTAGAAATAAAAGGAATACAATATTCTG
Alignments
lowQualScore : 1 111 11 111 11 1 1 111 1111 1 1 1 1 333333333 1 4444444444444444 111 11 1 66666666666666666 11 1 1 11 1 22222 111 1 1111 11 1 1 1 111 1 111 1 11 1 888888888888888888888 1 111 1 11 11 11 2222 111 11 1 1 22 22 222 111 11 11111 1111 1111 1 1 111 111 1 1111 11111 111 11111 11 1 11 11111111 4444444444444444444444444444 1111111
lowQualScore : 6 5 6 6 6 6 1 77 000 33 5 5 5 6 6 99 1 99 666 111 3 22 0 0 111 5555 0 0 0 0 555555555 0 2 7777777777777777 3 1 777 66 9 0 88888888888888888 33 0 0 2 33 0 55555 3 8 444 6 0 7777 77 8 8 0 11 0 8 8 3 0 5 0 777 0 777 3 0 00 3 0 3 0 6 6 6 6 99 88 0 8 8 999999999999999999999 0 777 0 33 33 2 3 33 1111 7 6 7 7 333 33 7 3 7 7 3 00 00 333 444 33 55555 0000 3333 5 5 1 1 5 1 333 000 1 5 1111 66666 99 22 6 222 6 6 11111 6 2 77 5 1 0 5 5 5 11 5 88888888 5 1111111111111111111111111111 888 55 2222222 5 66 1 2 4 77 6 6 6 1
lowQualScore : . . . . . . . .. ... .. . . . . . .. . .. ... ... . .. . . ... .... . . . . ......... . . ................ . . ... .. . . ................. .. . . . .. . ..... . . ... . . .... .. . . . .. . . . . . . . ... . ... . . .. . . . . . . . . .. .. . . . ..................... . ... . .. .. . . .. .... . . . . ... .. . . . . . .. .. ... ... .. ..... .... .... . . . . . . ... ... . . .... ..... .. .. . ... . . ..... . . .. . . . . . . .. . ........ . ............................ ... .. ....... . .. . . . .. . . . .
lowQualScore : 7 7 7 7 7 7 4 99 000 66 7 7 7 7 7 22 0 22 888 777 2 00 0 0 000 5555 0 0 0 0 222222222 0 5 2222222222222222 2 0 000 55 8 0 22222222222222222 88 0 0 5 22 0 00000 2 0 000 0 8 0000 00 0 0 8 00 8 0 0 2 0 0 0 000 0 555 2 0 88 0 2 2 0 7 7 7 7 22 33 8 0 0 888888888888888888888 0 000 0 88 00 5 0 88 2222 3 7 3 3 000 33 3 3 3 3 3 77 00 777 888 33 88888 1111 7777 7 7 4 4 7 4 999 000 4 7 6666 33333 22 00 7 555 7 7 88888 7 5 22 7 4 5 0 0 0 99 0 11111111 0 6666666666666666666666666666 888 22 8888888 0 55 0 2 5 99 7 7 7 4
consensus : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CANA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTAT-GTACAT--A-AACT--------AGTAAATTTTTCNACAA-T-TAC-TAATGAGAAA-TTATTCGATG-C---TTTCGAAA--CAAA-GCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATA-TTTG-GC--AAA-ATTAGCA-TT-TAATTT-GGG-GC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTGAAATCTTTCTTCCTCTCCTTGTGGCGCGTTCGTAT-AGTTTATATAAATCAAT-GCTAGT-TAAATC-CC-CGGTAAG--NAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC-T--TTGGATACC-T-TATAG--GTATACCNNA-TGG-A-TG-C-AG-T---CA-CAGAC-GCC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTT-ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
Reference ( family-2061 ) : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CANA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTAT-GTACAT--A-AACT--------AGTAAATTTTTCNACAA-T-TAC-TAATGAGAAA-TTATTCGATG-C---TTTCGAAA--CAAA-GCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATA-TTTG-GC--AAA-ATTAGCA-TT-TAATTT-GGG-GC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTGAAATCTTTCTTCCTCTCCTTGTGGCGCGTTCGTAT-AGTTTATATAAATCAAT-GCTAGT-TAAATC-CC-CGGTAAG--NAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC-T--TTGGATACC-T-TATAG--GTATACCNNA-TGG-A-TG-C-AG-T---CA-CAGAC-GCC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTT-ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
gi|1 : CTCTGCGCT-CTCGTGTC-TCGTGAAATTAA--A---GGGGA-TAAGCGAAGTAAAAAGTTGGCTTGTAAAAAAGTCATTCTGTC-G-AGGATATAGGTT-GCGCTTCGCGT-GGGTAGTGCAGAAGTG-TGACG-CAGAAATTA-TTC-GTGGGCAGAATATCGATTGTACATTGA-AGCTGAGGTGAGAGTGTGTGTTGCGACGA-GATACGTATTGAGAAAATTATTCGATG-CCTTTTTCGAAAACCAAAAGCA-CGTATTTTTCTTGGGGTGGAGTGGTGGGAGGCGTTATCTAT-CTTTTGTGGGATCAAGACGTTCAACTG--TCTCTT----TTTTTAACGTGT-AAAGGTTAGTTATTTGTCCGCATGCAAAGTGAAGATATTTGGTGACTGTCCTTAGCTGCT-CCTGTGTTCTATTGATTGAGTAACTGATAGCACACCTGCTTAG-GATTGATCCCATATGATGTAGTGAGAAGAGATGTTTGAATA-TTTGAGCCAAGA-GTTAGCA-TTGTAATTT-GGGCGC--------GGG-GGGGACTATGTC---AGAATTGCAGTAGAGCGAAAACTACAACCCCCACCCCC--ACCCCACTTAAG-ATCAGAGCTAGCGTGCCTGAAATCTT--TTTCTCTCCGTGTGGCGCGT--GTAT-AGTTTAT---AATCAATGGCTGAG-TAAGTCGCCGCGGTAAGCAGAAACTGTGCATA----GTTAA---CA--ACTT-ATTA-TAA-AA-GCTCTT-CCAAACAAGCGCTG-TCTAAGC-TTGTTGGATACC-TGTATAGGCGTATACCGCA-TGG-A-TG-C-A--T---CA-CAGG--GCCGAGAGAGAGTG-TGAGTGCAAAACACTG--GG-A--------ATTGG------TGGTAGTT---TATTTGATAGCCTATAGCACGCC-ATGAGGCAGAGTTCAGACCCTGGTTAAGTTGTAT-AAGAATGAGCT-AGATGTTGAGAC-CTTAGTTTG
gi|10 : G-AAT----ATGAG---CA--AACT-GTTA-TCACAA-G-TC-TTCCAAAACGA---TG-T-TAAGC-T--TTGAATATC-C-C-TAG--GTACATCTTACTGG-AGTGCC-AGAC---CC-CACAC-AAC-AG-AAAATAG-CTA-T-CAAAACACAT--GG-ATCTAGACCATT-AGAACT-TTGTA-T------TTT-A-A---TAT---ACCTT-AG-----AGGA---A-ACCACTTC-AATTTTTATGAAGAAcatgactgac
gi|11 : agaaaAG--TAAACTGT--ATT------TG----------TT-ATCA-CAACAA-G-TT-TTCCAAAAAGG---TG-T-TAAGC-T--TTGGATACC-T-C-TAG----ATACCTGA-CGGCA-CG-CGAG-TGTACA-CA------C-AG-GAAATAG-TTA-T-CAAAACACTT--GA-A--------TTT-AGACCATTTGAA-CTTTGTATTT--TA-CATAT---ACCCT-A--------GATTGA-ACCACTTC-AATTTTTTTTAATAAC--aaaatccaccagaaaa
gi|12 : A---CA--A-TTTATTA-TAA-AA-GGTC-T-CCAAAAAGG---TGGT-TAAGC-T--TTGGATACC-TGTATAG--GTATACCGTA-TGG-A-TG-C-AG-T---CAACAGATTGCC-AG-GAA----------------CACTG--GG-A--------AT--G------T-GTA-TTA--TATTT-ATA-CCTAT---ACCC--AT-----AGGATCCA-ACCCCTTCT-ATTGTTATAAGGAAC--ACT-A-GTGTT-AGA--CCAGATTTGATACTccctccataacaaagc
gi|13 : TAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGATGACTGTCC-TAGCTGCTCCCTTTG-TCTATTAAT--AGTAACTT-TAA---ACC---------------CCCATAT-ATGTAGTGAGAA-AGAT-TTTCAATA-TTTG-G---AAA-ATTAGCATTT-TAATTT-
gi|14 : CC-AGAGAAATTGCTTA-T-AAGAGCACCTTGGG-A--------ATT-G-------TGTG-AT---TATAC-GT--CCTTG---ACCCCGAT------GGATTCA-ACCTTTCCT-ATTGTTATAAAAAGC--ACTAAGGTGTT-AGACTCCAGATTTGAA
gi|16 : gatggaATTG-TTA-T-CAAAACACTT--GGGA--------ATT-G------T-GTA-GT---------ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACGCCTTCTAATTCTTATAA--AAC--ACT-AGGTGAT-AGAC-CCAGATTTGAAACTctg
gi|18 : A-AGAT-TTTGAATA-TTTG-GC--AAA-AT----A-TT-TTTTTT------------------TTTGGGCT-TGTCA--AGAAATTTAGTA-AACG--GACTATGAC-----CCCCC--AT----TTTAAga
gi|2 : TCTCTCT-C-CT-CTC-TCT--TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TCAAAAGTTG-CTT-TAAAA---TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CATA--TA-TTACG-CA-AAATTA-TCT--C------AATATCTAT-GTACATGTA-AACT--------AGTAAATTTTTCAACAA-T-TA--TAATGAGAAA-TTAT----------------AAA--CAAA-GCAACGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTCCACTGTTTCTTTT----TTTTTAACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTA-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTG-ATATTTTG-GC--AAATATTAGCA-TT-TAATTTGGGG-GCAGGGGAGGGGGTGGGGGCT-TGTCAAGAGAAATTTAGTA-GAGG--AACTAC-ACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTG-AATCTTTCTTCCTCTCCTTG-GGCG-GTTCGTAT-AGTTTATATAAATCAAT-GCTAGTATAAATC-CC---GTAAG--CAAACTGT--ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC-----TG---------TATAG--GTATACCCGA-TGG---TG-C-AG-T---CA-CAGAT-GCC-AG-AAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTTGATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTGTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGATACTtcgcaaagctctgctgaa
gi|21 : TGTG-ATTTTATATTAAGTACATCA-TT-ATTAATAA-AAAG-TCAT-CTCAAAAGG---TG-T-TAAGCTT--TTGGATACC-T-T
gi|22 : CTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTTTCTATTTTTAACGTGT-CAA-GTTAtacaaattcggtat
gi|22 : A-AGAT-TTTGAATA-TTTG-GC--AAA-ATagattttgaatatttggcaaaat
gi|23 : cttttgtggataacgttcactgtttctttttctatttttaacgtgtcaagttTCTCTCT-CTCT-CTC-TCTC-TC-TGAATT-AGCCA---GC--ATTAAA-GGA-CAAAA
gi|3 : cTCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GT--A-TGAA-GGA-TAAAAAGTTT-CTT-TAAAAA--TCACT-T--C-A-A---TATAGGTTTGCGCT--CCGT-GG-TA-T-CAAA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTGT-GTA--------ACT--------AGTAAAATCTTCCACAA-T-TAC-TA-TGAGAAA-TTATTCGATGAT---TTTCGAAA--CCAA-GCA-CGTATTTTTCTTGGGG------GGTGGGG-----TATCTCCACTTTTGT-GGAT---AACGTTG-CCTGTTTCTTTT----TTT--AACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGAC-GTCC-TAGCTGCT-CCTTTG-TCTATTGAT---GTAACTG-TAA---ACCTG-TTAGAAATGGACCTC-----ATGTTGTGATAA-AGAT-TTTGAATA-TTTG-GC--AAA---TAGTA-TT-AAATTT-----TT--------TTTTTTTTGCT-TGTGA--AGAAATTTGGTA-AACG--AACTA-GACCCCCCCCCCCCAAC----TTTAAGAATCAATG-CTACCTGCCTGAAATCTTTCTTCCTCTCCT--TGGC-CGTTCATATAAGTC--TATAAAGCAAT-GCTAGT---AAT--CC-CAGTGAG--AAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-T-A-AA-G-TC-T-CCAAAAAGG---TGTT-TAAGC-T--TTGGATACCTT-TATAG--GTATACCGCA-TGG-A-TG-C-AG-T---CA-CAGAT-GCC-AA-GAAATTG-TTA-T-AAAAACACTTC-GG-A--------ATT-G-------TGTA---------TT-ATA--CTAT---A-CCC-AT-----AGGATTCA-A--CCTTCTA---TTTATAAA-AAC--ACC-AGGTGTT-AGAC-CCAGATTTGAAACT
gi|4 : CTCT-TCCT-CTC--CTC-TC-TGAAATCAA--ATGCGA--A-TCAG-GA--TAAAAAGTTG-CTT-TAAAAA--TCA-CCT--C-AGA---TACAg
gi|5 : agtcaatcaattctctataaatctttcatgtctcgtttacttatcctttgctcagaagacaggatcatcaacttttaaagtaaaaatcaatataataacagatcttgaaatatctgtcaggtagaaaaaaaggaatacattatctgcgcccaaaatggaatacctaccatttctgtcactgtcctctgatttttctggaaatttccgctcacacatcgtacgaacctttttcattatcttgaattattatttatctatccgtgtaacccaatcacgggaattgtttaaaactgcttattcaattctcagacaccattaaatccgaaatttttgttcgtgcttaaaacctcttgtctatttctattaacatattcctttagtagtaaagttattctttaaaatgttcatcccattccgaattcttaccctatacatatagataaatgaagctatactcttgatacgggtgccaatttattttcaatgtcagtctcatcaattcacatcttcgttgatctacttttgaaattacatgcatgggtttttcgaatattaacgtggcagatgatgacttggtttattccctataaagcaaagattgaaagtcttgcaaacaacttactcttccatttagtagtacatcatttgtgtttatacactccgtatactcactcTCTCTCT-CTCTCCTC-TCTCTTC-TGAAAT-AA--A---GG--A-TAAG-GAA-TCAAAAGTTG-CTT-T-AAAA--TCACCCT--C-A-A---TAT
gi|8 : atatagtcaaaattaaacatttatgtctgtttactttaatctgtcagaacgacaggatcatacaactttataagtagtaaaaataaataaataaacaatcttgaaatatctgtcaggtagaaataaaaggaatacaatattctgcgcacaattggaaatacctaaacatgcatgcacgagttgaaatttcgtcacaatcgtaagaactttatttatttgatatactgtactgtaaacaaaactgaattgtttaaaactgactgtatatacaacactcaataaatcgaatttcaaacatatatgaacggttataaatcgaatatttttgttcggaaagtatttcaatgtacatatctttagtagtaaagttatctctaaaaatgatatccatcgaattttacctatacatataaatcatgtatatttgataaaggggcaatttatttttcatttcaagtatcaattcaccattcgttgatctaatttgaaatacatgcatgggttttgaaatattaacgtgcagatgcatgactaggttattctataaaagaaaatgcgtttcaaaaagaatttgaaaagtcgaaacaatatttatttagtaaggatcattttgtgtttgtgttctatacagtatcGAAAC-AA--A---GGG-A-CAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--CAA-A---TATAGGTTTGCGCTT-CCGTAGG-TA-T-CA-A--TATTTACGCCA-AAATTATTCTGGC------AATATCTAT-GTACAT--GTAACT--------AG-AAATTTTTTCACAATT-TAT-TAATGAGAAA-ATA----AT-----------AAA--CAAA-GCA-CGTAATTTT-TAGGGGT-GAG-GGTGGGG-----TATCTATACTTTTTG-GGAT---AACGTTC-ACTGTTTCTTTT----TTTAAACCATTTAAAA-GTTAG-TATT--TTCGCATGC-AAGT-AAGATA-TTGG
blockSeqs : . T C . T . C CC TGC G T . . . . . C . AG . T TC A . T TA T C . T GGC . C GTAAACT T A TT C A . TTCGATGATTTTCG . . A C T . . A . . C TCTA TT A . . . . T . C . A . . T . AA T A . . . T . . TA T . GGGGGCAGGGGAGGGGGTGG . AAG . . TG C A CA . A C A T TG G T A T A . AT C CA T G TTATA AGTA TCA T A C C A G TT . G . TT TGTA . TT C AG C G TGTA A C TT . A C . . TG G TCTAGACC . GACCATTTGAACTTTGTATTTTAC . CG GA . TA T G G . A . T A
blockSeqs : . T . . . . . . . . . . . . . . C . AA . T T . . T AA . . . . GC . C GTAACT T C T T A . AT . . . C T . . A . . . . TT . . . . . T . C . A . . T . A G A . . . . . . A . . TTTTTTTT . A . . C C C . . A . . T T C T . . A . . . . C G A G AA . . A C . . TT . T . T TTTA . TG . CA . . AC . G C . . . . . C . . . TTGTATTTATTTGATAC . T TA . TA T T T . . . . A
blockSeqs : . C . . . . . . . . . . . . . . C . A . T . . . T A . . . . C . . ACT . C T . . . T . . . . . . . A . . . . AA . . . . . . . . . . . . . . . . . . . . . . . A . . TTT . A . . G . . . . A G A A A . . A . . . AT . . . T CC . GT . A . . T . G T . . . . . . . . . GAACTTTGTATTTTAA . T TA . TA G A G . . . . T
blockSeqs : . T . . . . . . . . . . . . . . C . A . . . . . . . . . . . . . . . . A . . . A A A . . A . . . T . . . T TC . CG . A . . T . G T . . . . . . . . . TGTATTATATTTATAC . C TA . A G A A . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . A . . . . . . . . . A A . . A . . . T . . . T TA . GC . . . . T . . . . . . . . . . . . TGTGATTATACGTC . C TA . A C A G . . . .
blockSeqs : . . . . . . . . . . . . . . . T . . . . . . . . . . . . . TGTAGTATAC . C T . T G A . .
blockSeqs : . . . . . . . TGTATTATA . . . . T T A .
blockSeqCons : ** ** ** *** *** ** ** G* A*** TT* *** T*** TC*** ** A** T* TGTATTATATTTTAC************* *** TA***** N* **
originalCons : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CANA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTAT-GTACAT--A-AACT--------AGTAAATTTTTCNACAA-T-TAC-TAATGAGAAA-TTATTCGATG-C---TTTCGAAA--CAAA-GCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATA-TTTG-GC--AAA-ATTAGCA-TT-TAATTT-GGG-GC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTGAAATCTTTCTTCCTCTCCTTGTGGCGCGTTCGTAT-AGTTTATATAAATCAAT-GCTAGT-TAAATC-CC-CGGTAAG--NAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-T-CCAAAAAGG---TG-T-TAAGC-T--TTGGATACC-T-TATAG--GTATACCNNA-TGG-A-TG-C-AG-T---CA-CAGAC-GCC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G------TTGTA-TT---TATTT-ATA-CCTAT---ACCCC-AT-----AGGATTCA-ACCCCTTCTAATTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
finalCons : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CANA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTAT-GTACAT--A-AACT--------AGTAAATTTTTCNACAA-T-TAC-TAATGAGAAA-TTATTCGATG-C---TTTCGAAA--CAAA-GCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATA-TTTG-GC--AAA-ATTAGCA-TT-TAATTT-GGG-GC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTGAAATCTTTCTTCCTCTCCTTGTGGCGCGTTCGTAT-AGTTTATATAAATCAAT-GCTAGT-TAAATC-CC-CGGTAAG--NAAACTGTG-ATT----ATTAA---CAA---TT-ATTA-TAA-AA-G-TCTT-CCAAAAAGG---TG-T-TAAGCT---TTGGATACCTC---TAG--GTATACCNNA-TGGA--TG-C-AG-T---CA-CAGAT-GCC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-GTGTATTATATTTTAC-------------CTAT---ACCCC-ATA-----GGATTCA-ACCCCTTCN-ATTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATATAGTCAAAATTAAACATTTATGTCTTGTTTACTTATCTGTCAGAACGACAGGATCATACAACTTTAAAGTACAGTAAAATAAATAAATAAACAATTCTTGAACATATCTGTCCAGGTTAGAAATAAAAGGAATACAATATTCTCGCGTCACAATTGGAAAAACCTAAACATGCATGCACGAGTTGAAATTTTTTCACAATCGCTTAAGAACTTTTATTTATTTGTTATATCGTTACTGTAACAAACTGAATTGGTTTAAAACTGCTTAGTATAACACACCATTAAATCGAAATTAAACATATATTGATACGGTTTATAAATCGAATATTTTTGTTCGGAAAATGTATTTCAATGTACATAATCTTTAGAGTAAAGTTATTCTCTAAAAAGATATCCATCGAAATTTTTACCATATCATATAATTATGTATATTTTGATATAAAGGGGCAAATTTATTTTTCATTTCAATATCAATTCACATTCGTTGATCTAAGTTTGAAATTACATTTGATGGGTTTTTTGAATATTAACGTGCATGATGATGACTAGGTTATTCTATAAAAGAAAACTGCGTTTCAAAAGAATTGAAAGTCGAAACAGATATTCATTTAGTAAGGATCATTTGGTTTCTATACA
Unaligned ( gi|7 ): ATAGTCAAATTTAAACATTTATTGTCTCGTTTTAGCGTGTGATGTCGTGTCAGACCACGACAGGGTCACTACAACTGGGTTTAAAGTAAAAAAAGAAACTATTTTTTATAAAATCCCTTGAAATTTATATGCTGTCAGGGTAGCAAATTAAAAGGAGGAGGGGTGACGAATGTATTCTGCGCGACAAATGGAACATACCTACATGCATGCACGAGTTTTGAAATTTCTGTCCACGAACTCGTAGAACTTTTATTTAATTTGAAGTATATGTTACTGGTAACACAAACTGAATTGTTTTAAAACTGCTTTAGGTACTAACACACCACAATAAATCGAAATTTCAAACACTATATGATGTACCTGTGTATAAATCGGAATATTTTTGCTTCGGTAAACAATGTATGGTTCAATG
Unaligned ( gi|9 ): AAATAAAAGAAATACAATATTCTGCACACAAATGGAAATATATCTACATCCATGCATGAGTTAAAATTTTGTCACATTGAATCGTGAATTTTTTTATTTATTCTACATTCAACACACCAGTAAATTGAAATTTCAAATATATATATGCTATGGTTATAAATCAAATATTTTTGTTTGGAAAATGTATGTATTTCAATGTACACCTCTTATCCGTTGAATTTTACCTGTACATCTGTATATTCGATAAAAGGGCAATTTATCTTT
Unaligned ( gi|15 ): GAGAGAAACTGCGTTTTAACAAGGAATTTTGAAAGCGAAACAGATATTCAGTTTAGTAAGGGATCATTTTGGGGGTGGTTACTATAGCAGTTAGTTACTCTCTCTCTCGTCCTCGTCTCGTCT
Unaligned ( gi|17 ): ACGTGCAAATGATAACTTATAGTTCTTTCTTTATGAAAGAAAAATGTGGTTCAAAAGAATTTGAAAGTGGAAATATTTGTTAACTTTAGTAAGGATCATTTGGTGTT
Unaligned ( gi|19 ): ATGTACATATCTTTAGTAGTAAAGTTATACTCTAAAAGATATCCATCGAATTTTACCTAATATACGTATAAATTATGTATATTTGATAAAGGGGCA
Unaligned ( gi|20 ): GGATCATACAAGTTTTAAAATAAAAAAAAAATAATAAAAAATCTTGAAATATCTGTTAGGTAGAAATAAAAGGAATACAATATTCTG
Alignments
lowQualScore : 1 111 11 111 11 1 1 111 1111 1 1 1 1 333333333 1 4444444444444444 111 11 1 66666666666666666 11 1 1 11 1 22222 111 1 1111 11 1 1 1 111 1 111 1 11 1 888888888888888888888 1 111 1 11 11 11 2222 111 11 1 1 22 22 222 111 11 11111 1111 1111 1 1 111 1 111111 111 11111 11111 1 11 33333333 11111 11 22222222 1111111
lowQualScore : 6 5 6 6 6 6 1 77 000 33 5 5 5 6 6 99 1 99 666 111 3 22 0 0 111 5555 0 0 0 0 555555555 0 2 7777777777777777 3 1 777 66 9 0 88888888888888888 33 0 0 2 33 0 55555 3 8 444 6 0 7777 77 8 8 0 11 0 8 8 3 0 5 0 777 0 777 3 0 00 3 0 3 0 6 6 6 6 99 88 0 8 8 999999999999999999999 0 777 0 33 33 2 3 33 1111 7 6 7 7 333 33 7 3 7 7 3 00 00 333 444 33 55555 0000 3333 5 5 1 1 5 5 0 000 1 5 5 77 777777 77 99 22 6 222 6 6 11111 6 0 33333 5 1 0 5 5 5 11 5 66666666 00000 5 33 4 99999999 888 2 5 2222222 66 66 5 2 2 7 77 6 6 6 1
lowQualScore : . . . . . . . .. ... .. . . . . . .. . .. ... ... . .. . . ... .... . . . . ......... . . ................ . . ... .. . . ................. .. . . . .. . ..... . . ... . . .... .. . . . .. . . . . . . . ... . ... . . .. . . . . . . . . .. .. . . . ..................... . ... . .. .. . . .. .... . . . . ... .. . . . . . .. .. ... ... .. ..... .... .... . . . . . . . ... . . . .. ...... .. .. .. . ... . . ..... . . ..... . . . . . . .. . ........ ..... . .. . ........ ... . . ....... .. .. . . . . .. . . . .
lowQualScore : 7 7 7 7 7 7 4 99 000 66 7 7 7 7 7 22 0 22 888 777 2 00 0 0 000 5555 0 0 0 0 222222222 0 5 2222222222222222 2 0 000 55 8 0 22222222222222222 88 0 0 5 22 0 00000 2 0 000 0 8 0000 00 0 0 8 00 8 0 0 2 0 0 0 000 0 555 2 0 88 0 2 2 0 7 7 7 7 22 33 8 0 0 888888888888888888888 0 000 0 88 00 5 0 88 2222 3 7 3 3 000 33 3 3 3 3 3 77 00 777 888 33 88888 1111 7777 7 7 4 4 7 7 9 000 4 7 7 99 666666 99 22 00 7 555 7 7 88888 7 7 00000 7 4 5 0 0 0 99 0 22222222 44444 0 88 1 00000000 888 5 0 8888888 99 00 0 8 2 6 99 7 7 7 4
consensus : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CANA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTAT-GTACAT--A-AACT--------AGTAAATTTTTCNACAA-T-TAC-TAATGAGAAA-TTATTCGATG-C---TTTCGAAA--CAAA-GCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATA-TTTG-GC--AAA-ATTAGCA-TT-TAATTT-GGG-GC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTGAAATCTTTCTTCCTCTCCTTGTGGCGCGTTCGTAT-AGTTTATATAAATCAAT-GCTAGT-TAAATC-CC-CGGTAAG--NAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TCTTCCAAAAAGG---TG-T-TAAGC-T--TTGGATACC--TN--TA--G--GTATACCNNA-TGG-A-TG-C-AG-T---CA-CAGAT-G--CC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G-T-GT-A--TTATATTT--TA-CCTAT---ACCCC-AT-----AGGATTCAACCCCT--TC-NA-TTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
Reference ( family-2061 ) : TCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CANA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTAT-GTACAT--A-AACT--------AGTAAATTTTTCNACAA-T-TAC-TAATGAGAAA-TTATTCGATG-C---TTTCGAAA--CAAA-GCA-CGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTT----TTTTTAACGTGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTG-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTGAATA-TTTG-GC--AAA-ATTAGCA-TT-TAATTT-GGG-GC--------GGGTNNGGGCT-TGTCA--AGAAATTTAGTA-AACG--AACTACGACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTGAAATCTTTCTTCCTCTCCTTGTGGCGCGTTCGTAT-AGTTTATATAAATCAAT-GCTAGT-TAAATC-CC-CGGTAAG--NAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TCTTCCAAAAAGG---TG-T-TAAGC-T--TTGGATACC--TC--TA--G--GTATACCNNA-TGG-A-TG-C-AG-T---CA-CAGAT-G--CC-AG-GAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-G-T-GT-A--TTATATTT--TA-CCTAT---ACCCC-AT-----AGGATTCAACCCCT--TC-NA-TTNTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGAAACT
gi|1 : CTCTGCGCT-CTCGTGTC-TCGTGAAATTAA--A---GGGGA-TAAGCGAAGTAAAAAGTTGGCTTGTAAAAAAGTCATTCTGTC-G-AGGATATAGGTT-GCGCTTCGCGT-GGGTAGTGCAGAAGTG-TGACG-CAGAAATTA-TTC-GTGGGCAGAATATCGATTGTACATTGA-AGCTGAGGTGAGAGTGTGTGTTGCGACGA-GATACGTATTGAGAAAATTATTCGATG-CCTTTTTCGAAAACCAAAAGCA-CGTATTTTTCTTGGGGTGGAGTGGTGGGAGGCGTTATCTAT-CTTTTGTGGGATCAAGACGTTCAACTG--TCTCTT----TTTTTAACGTGT-AAAGGTTAGTTATTTGTCCGCATGCAAAGTGAAGATATTTGGTGACTGTCCTTAGCTGCT-CCTGTGTTCTATTGATTGAGTAACTGATAGCACACCTGCTTAG-GATTGATCCCATATGATGTAGTGAGAAGAGATGTTTGAATA-TTTGAGCCAAGA-GTTAGCA-TTGTAATTT-GGGCGC--------GGG-GGGGACTATGTC---AGAATTGCAGTAGAGCGAAAACTACAACCCCCACCCCC--ACCCCACTTAAG-ATCAGAGCTAGCGTGCCTGAAATCTT--TTTCTCTCCGTGTGGCGCGT--GTAT-AGTTTAT---AATCAATGGCTGAG-TAAGTCGCCGCGGTAAGCAGAAACTGTGCATA----GTTAA---CA--ACTT-ATTA-TAA-AA-GCTCTTCCAAACAAGCGCTG-TCTAAGC-TTGTTGGATACCTGTA--TA--GGCGTATACCGCA-TGG-A-TG-C-A--T---CA-CAGG--G--CCGAGAGAGAGTG-TGAGTGCAAAACACTG--GG-A--------ATTGG-TGGT-A--GTTTATTTGATAGCCTATAGCACGCC-ATGAGGCAGAGTTCAGACCCTGGTT-AA-GTTGTAT-AAGAATGAGCT-AGATGTTGAGAC-CTTAGTTTG
gi|10 : G-AAT----ATGAG---CA--AACT-GTTA-TCACAA-G-TCTTCCAAAACGA---TG-T-TAAGC-T--TTGAATATC--CC--TA--G--GTACATCTTACTGG-AGTGCC-AGAC---CC-CACAC-A--AC-AG-AAAATAG-CTA-T-CAAAACACAT--GG-ATCTAGACCATT-A---GA-ACTTTGTATTT--TA--ATAT---ACCTT-AG-----AGGA---AACCACT--TC-AA-TTTTTATGAAGAAcatgactgac
gi|11 : agaaaAG--TAAACTGT--ATT------TG----------TT-ATCA-CAACAA-G-TTTTCCAAAAAGG---TG-T-TAAGC-T--TTGGATACC--TC--TA--G----ATACCTGA-CGGCA-CG-CGAG-TGTACA-CA--------C-AG-GAAATAG-TTA-T-CAAAACACTT--GA-ATTTAGACCATT---T-GA-ACTTTGTATTT--TA-CATAT---ACCCT-A--------GATTGAACCACT--TC-AA-TTTTTTTTAATAAC--aaaatccaccagaaaa
gi|12 : A---CA--A-TTTATTA-TAA-AA-G-GTCTCCAAAAAGG---TGGT-TAAGC-T--TTGGATACC--TG--TATAG--GTATACCGTA-TGG-A-TG-C-AG-T---CAACAGATTG--CC-AG-GAA----------------CACTG--GG-A--------AT--G-T-GT-A--TTATATTTA-TA-CCTAT---A-CCC-AT-----AGGATCCAACCCCT--TC-TA-TTGTTATAAGGAAC--ACT-A-GTGTT-AGA--CCAGATTTGATACTccctccataacaaagc
gi|13 : TAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGATGACTGTCC-TAGCTGCTCCCTTTG-TCTATTAAT--AGTAACTT-TAA---ACC---------------CCCATAT-ATGTAGTGAGAA-AGAT-TTTCAATA-TTTG-G---AAA-ATTAGCATTT-TAATTT-
gi|14 : GAT-GGACC-AGAGAAATTGCTTA-T-AAGAGCACCTTGGG-A--------ATT-G-T-GTGA--TTATACGT-----CCTTG---ACCCCGAT------GGATTCAACCTTT--CC-TA-TTGTTATAAAAAGC--ACTAAGGTGTT-AGACTCCAGATTTGAA
gi|16 : ATTG-TTA-T-CAAAACACTT--GGGA--------ATT-G-T-GT-A--GTATA--------CCTAT---ACCCC-AT-----AGGATTCAACGCCT--TC-TAATTCTTATAAA--AC--ACT-AGGTGAT-AGAC-CCAGATTTGAAACTctg
gi|18 : A-AGAT-TTTGAATA-TTTG-GC--AAA-AT----A-TT-TTTTTT------------------TTTGGGCT-TGTCA--AGAAATTTAGTA-AACG--GACTATGAC-----CCCCC--AT----TTTAAga
gi|2 : TCTCTCT-C-CT-CTC-TCT--TC-TGAAAT-AA--A---GG--A-TAAG-GAA-TCAAAAGTTG-CTT-TAAAA---TCACCCT--C-A-A---TATAGGTTTGCGCTTCCCGT-GG-TA-T-CATA--TA-TTACG-CA-AAATTA-TCT--C------AATATCTAT-GTACATGTA-AACT--------AGTAAATTTTTCAACAA-T-TA--TAATGAGAAA-TTAT----------------AAA--CAAA-GCAACGTATTTTTCTTGGGGT-GAG-GGTGGGG-----TATCTATACTTTTGT-GGAT---AACGTTCCACTGTTTCTTTT----TTTTTAACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGACTGTCC-TAGCTGCTCCCTTTA-TCTATTGAT--AGTAACTG-TAA---ACCTG-TTAG-AATTGACCCCATAT-ATGTAGTGAGAA-AGAT-TTTG-ATATTTTG-GC--AAATATTAGCA-TT-TAATTTGGGG-GCAGGGGAGGGGGTGGGGGCT-TGTCAAGAGAAATTTAGTA-GAGG--AACTAC-ACCCCCACCCCC--AC----TTTAAGAATCAATGCCTACGTGCCTG-AATCTTTCTTCCTCTCCTTG-GGCG-GTTCGTAT-AGTTTATATAAATCAAT-GCTAGTATAAATC-CC---GTAAG--CAAACTGT--ATT----ATTAA---CA--A-TT-ATTA-TAA-AA-G-TC-TCCAAAAAGG---TG-T-TAAGC-T------GTA--------TA--G--GTATACCCGA-TGG---TG-C-AG-T---CA-CAGAT-G--CC-AG-AAAATTG-TTA-T-CAAAACACTT--GG-A--------ATT-GTT-GT-A--TT-TATTTGATA-CCTAT---ACCCC-AT-----AGGATTCAACCCCT--TCTAA-TTGTTATAAAGAAC--ACT-AGGTGTT-AGAC-CCAGATTTGATACTtcgcaaagctctgctgaa
gi|21 : TGTG-ATTTTATATTAAGTACATCA-TT-ATTAATAA-AAAG-TCATCTCAAAAGG---TG-T-TAAGCTT--TTGGATACC--TT--TA--
gi|22 : CTTTTGT-GGAT---AACGTTC-ACTGTTTCTTTTTCTATTTTTAACGTGT-CAA-GTTAcaaattcggtat
gi|22 : A-AGAT-TTTGAATA-TTTG-GC--AAA-ATagattttgaatatttggcaaaat
gi|23 : cttttgtggataacgttcactgtttctttttctatttttaacgtgtcaagttTCTCTCT-CTCT-CTC-TCTC-TC-TGAATT-AGCCA---GC--ATTAAA-GGA-CAAAA
gi|3 : cTCTCTCT-CTCT-CTC-TCTC-TC-TGAAAT-AA--A---GT--A-TGAA-GGA-TAAAAAGTTT-CTT-TAAAAA--TCACT-T--C-A-A---TATAGGTTTGCGCT--CCGT-GG-TA-T-CAAA--TA-TTACG-CA-AAATTA-TCT-GC------AATATCTGT-GTA--------ACT--------AGTAAAATCTTCCACAA-T-TAC-TA-TGAGAAA-TTATTCGATGAT---TTTCGAAA--CCAA-GCA-CGTATTTTTCTTGGGG------GGTGGGG-----TATCTCCACTTTTGT-GGAT---AACGTTG-CCTGTTTCTTTT----TTT--AACATGT-AAA-GTTAGTTATT--TTCGCATGCAAAGT-AAGATA-TTGGTGAC-GTCC-TAGCTGCT-CCTTTG-TCTATTGAT---GTAACTG-TAA---ACCTG-TTAGAAATGGACCTC-----ATGTTGTGATAA-AGAT-TTTGAATA-TTTG-GC--AAA---TAGTA-TT-AAATTT-----TT--------TTTTTTTTGCT-TGTGA--AGAAATTTGGTA-AACG--AACTA-GACCCCCCCCCCCCAAC----TTTAAGAATCAATG-CTACCTGCCTGAAATCTTTCTTCCTCTCCT--TGGC-CGTTCATATAAGTC--TATAAAGCAAT-GCTAGT---AAT--CC-CAGTGAG--AAAACTGTG-ATT----ATTAA---CA--A-TT-ATTA-T-A-AA-G-TC-TCCAAAAAGG---TGTT-TAAGC-T--TTGGATACC--TTTATA--G--GTATACCGCA-TGG-A-TG-C-AG-T---CA-CAGAT-G--CC-AA-GAAATTG-TTA-T-AAAAACACTTC-GG-A--------ATT-G-T-GT-A--TTATA---------CTAT---A-CCC-AT-----AGGATTCAA--CCT--TC-TA-T--TTATAAA-AAC--ACC-AGGTGTT-AGAC-CCAGATTTGAAACT
gi|4 : CTCT-TCCT-CTC--CTC-TC-TGAAATCAA--ATGCGA--A-TCAG-GA--TAAAAAGTTG-CTT-TAAAAA--TCA-CCT--C-AGA---TACAg
gi|5 : agtcaatcaattctctataaatctttcatgtctcgtttacttatcctttgctcagaagacaggatcatcaacttttaaagtaaaaatcaatataataacagatcttgaaatatctgtcaggtagaaaaaaaggaatacattatctgcgcccaaaatggaatacctaccatttctgtcactgtcctctgatttttctggaaatttccgctcacacatcgtacgaacctttttcattatcttgaattattatttatctatccgtgtaacccaatcacgggaattgtttaaaactgcttattcaattctcagacaccattaaatccgaaatttttgttcgtgcttaaaacctcttgtctatttctattaacatattcctttagtagtaaagttattctttaaaatgttcatcccattccgaattcttaccctatacatatagataaatgaagctatactcttgatacgggtgccaatttattttcaatgtcagtctcatcaattcacatcttcgttgatctacttttgaaattacatgcatgggtttttcgaatattaacgtggcagatgatgacttggtttattccctataaagcaaagattgaaagtcttgcaaacaacttactcttccatttagtagtacatcatttgtgtttatacactccgtatactcactcTCTCTCT-CTCTCCTC-TCTCTTC-TGAAAT-AA--A---GG--A-TAAG-GAA-TCAAAAGTTG-CTT-T-AAAA--TCACCCT--C-A-A---TAT
gi|8 : atatagtcaaaattaaacatttatgtctgtttactttaatctgtcagaacgacaggatcatacaactttataagtagtaaaaataaataaataaacaatcttgaaatatctgtcaggtagaaataaaaggaatacaatattctgcgcacaattggaaatacctaaacatgcatgcacgagttgaaatttcgtcacaatcgtaagaactttatttatttgatatactgtactgtaaacaaaactgaattgtttaaaactgactgtatatacaacactcaataaatcgaatttcaaacatatatgaacggttataaatcgaatatttttgttcggaaagtatttcaatgtacatatctttagtagtaaagttatctctaaaaatgatatccatcgaattttacctatacatataaatcatgtatatttgataaaggggcaatttatttttcatttcaagtatcaattcaccattcgttgatctaatttgaaatacatgcatgggttttgaaatattaacgtgcagatgcatgactaggttattctataaaagaaaatgcgtttcaaaaagaatttgaaaagtcgaaacaatatttatttagtaaggatcattttgtgtttgtgttctatacagtatcGAAAC-AA--A---GGG-A-CAAG-GAA-TAAAAAGTTG-CTT-TAAAAA--TCACCCT--CAA-A---TATAGGTTTGCGCTT-CCGTAGG-TA-T-CA-A--TATTTACGCCA-AAATTATTCTGGC------AATATCTAT-GTACAT--GTAACT--------AG-AAATTTTTTCACAATT-TAT-TAATGAGAAA-ATA----AT-----------AAA--CAAA-GCA-CGTAATTTT-TAGGGGT-GAG-GGTGGGG-----TATCTATACTTTTTG-GGAT---AACGTTC-ACTGTTTCTTTT----TTTAAACCATTTAAAA-GTTAG-TATT--TTCGCATGC-AAGT-AAGATA-TTGG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATATAGTCAAAATTAAACATTTATGTCTTGTTTACTTATCTGTCAGAACGACAGGATCATACAACTTTAAAGTACAGTAAAATAAATAAATAAACAATTCTTGAACATATCTGTCCAGGTTAGAAATAAAAGGAATACAATATTCTCGCGTCACAATTGGAAAAACCTAAACATGCATGCACGAGTTGAAATTTTTTCACAATCGCTTAAGAACTTTTATTTATTTGTTATATCGTTACTGTAACAAACTGAATTGGTTTAAAACTGCTTAGTATAACACACCATTAAATCGAAATTAAACATATATTGATACGGTTTATAAATCGAATATTTTTGTTCGGAAAATGTATTTCAATGTACATAATCTTTAGAGTAAAGTTATTCTCTAAAAAGATATCCATCGAAATTTTTACCATATCATATAATTATGTATATTTTGATATAAAGGGGCAAATTTATTTTTCATTTCAATATCAATTCACATTCGTTGATCTAAGTTTGAAATTACATTTGATGGGTTTTTTGAATATTAACGTGCATGATGATGACTAGGTTATTCTATAAAAGAAAACTGCGTTTCAAAAGAATTGAAAGTCGAAACAGATATTCATTTAGTAAGGATCATTTGGTTTCTATACA
Unaligned ( gi|7 ): ATAGTCAAATTTAAACATTTATTGTCTCGTTTTAGCGTGTGATGTCGTGTCAGACCACGACAGGGTCACTACAACTGGGTTTAAAGTAAAAAAAGAAACTATTTTTTATAAAATCCCTTGAAATTTATATGCTGTCAGGGTAGCAAATTAAAAGGAGGAGGGGTGACGAATGTATTCTGCGCGACAAATGGAACATACCTACATGCATGCACGAGTTTTGAAATTTCTGTCCACGAACTCGTAGAACTTTTATTTAATTTGAAGTATATGTTACTGGTAACACAAACTGAATTGTTTTAAAACTGCTTTAGGTACTAACACACCACAATAAATCGAAATTTCAAACACTATATGATGTACCTGTGTATAAATCGGAATATTTTTGCTTCGGTAAACAATGTATGGTTCAATG
Unaligned ( gi|9 ): AAATAAAAGAAATACAATATTCTGCACACAAATGGAAATATATCTACATCCATGCATGAGTTAAAATTTTGTCACATTGAATCGTGAATTTTTTTATTTATTCTACATTCAACACACCAGTAAATTGAAATTTCAAATATATATATGCTATGGTTATAAATCAAATATTTTTGTTTGGAAAATGTATGTATTTCAATGTACACCTCTTATCCGTTGAATTTTACCTGTACATCTGTATATTCGATAAAAGGGCAATTTATCTTT
Unaligned ( gi|15 ): GAGAGAAACTGCGTTTTAACAAGGAATTTTGAAAGCGAAACAGATATTCAGTTTAGTAAGGGATCATTTTGGGGGTGGTTACTATAGCAGTTAGTTACTCTCTCTCTCGTCCTCGTCTCGTCT
Unaligned ( gi|17 ): ACGTGCAAATGATAACTTATAGTTCTTTCTTTATGAAAGAAAAATGTGGTTCAAAAGAATTTGAAAGTGGAAATATTTGTTAACTTTAGTAAGGATCATTTGGTGTT
Unaligned ( gi|19 ): ATGTACATATCTTTAGTAGTAAAGTTATACTCTAAAAGATATCCATCGAATTTTACCTAATATACGTATAAATTATGTATATTTGATAAAGGGGCA
Unaligned ( gi|20 ): GGATCATACAAGTTTTAAAATAAAAAAAAAATAATAAAAAATCTTGAAATATCTGTTAGGTAGAAATAAAAGGAATACAATATTCTG