lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 333333 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 999999999999999999999999999999999999999 1111 33333 1111111 444444444 1 333333333333333333 11111 11 1111 0000000000000000000000000000000 11 111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111
lowQualScore : 666666 3 6 6 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 2 7 6 222222222222222222222222222222222222222 99 4444 5 33333 1 4444444 77 000000000 0 1 4 0 4 1 3 88 2 777777777777777777 5 5 55555 44 3 2222 666 4444444444444444444444444444444 66 3 2 8888 111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111 3 7 55
lowQualScore : ...... . . . ........................................................................................................................................................................................................................................................................................................................................... . . . . ....................................... .. .... . ..... . ....... .. ......... . . . . . . . .. . .................. . . ..... .. . .... ... ............................... .. . . .... ... .................................................................................................................................................................................................................................................................................................... .... . . ..
lowQualScore : 333333 7 0 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 0 0 888888888888888888888888888888888888888 99 2222 7 44444 1 4444444 66 000000000 3 9 4 1 4 9 4 11 0 444444444444444444 1 0 66666 44 4 4444 666 6666666666666666666666666666666 55 1 6 5555 000 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4444 6 3 00
consensus : TGGCGGATCCGGCGC-CCGGGCGCG-CCCCG------TCACGATC--ATATGATCTATTTNTTATAGAAATG----TTCCA-AAAAAGCAT------G-TAC--GTATACGTTTTATTTT-GTCAGAACTCAGTAGNTTCAGGGGACTT--------T--------GGGCCCCAC-CAAGGNNTTACCCNNT--A---TT-CAC--NAGGAGTCT-CAAGACG-GCTCTCGA-AT-AC-CAGCCGTTTACTG-------CGTCCTC----CCGTTCA-AAATTT-------------TCNCTGGTTAAACACAACGTTGCAGNTAGATAGGTCACTCGTTAAANANAAGNCTAAGGTTAAATGTCGCTNCCCGNAATGGGCGCATAAAA-TN-A-AAA-------TT-CAA-------TTTTT--G--AGGGGGAAC----TTCA-CGCCATTGCATTT--AGCAA-------ATACGGTGCATGTACTTTCCTGCGAAA-CGT-GGCTCCTGAACTTGACCTC-G--------TGT-A---AACC-ATCNTGA-ACACCTCGCGCAT---TACCGAATT-GAT-AAC-ATAA-CT-----TGA-NA--TTAAACCAATGAAATCCTTTGTAACAAACC----AAA---ATAAAC----AA----------NC----C--CT--AATACA-----A----A-G-GAAAT------TTATAC-AT------ATACAN-ATG--A--TT---TTTAC-AATACA-----A----ANA-----T-----TANAGAATACA-AA-T---------AAATAAA----AG-ATTAT-----ACAACN--CAAAT----AA--------T-AC--AATACAAATGGAAGATAT-A-AC-G---TACAAATG-AAAAT-------------ATG--A--A---------------TTATACAATACAAAT-GGAAA-A-T--ATACAATAC
Reference ( gi|1 ) : TGGCGGATCCAGCGCGCCGGGCACAACCCCATCCC--TCACAA----ATATGATTT-TTTTTTATACAAATACAGTTTCCACAAAAAGCAC------G-TAC--GT-TACGTTTTATTTT-GTCAGAATTCGGTAGTATCAGGGGACTT--------T--------GGACCCCAC-CAAGGCGTTGTCCAAT--A---CT-CAC--AAGAAGTCT-CAAGACA-GCTCTCAA-AT-ATTCAGCCGTTTACTG-------CATACTC----CCGTTCA-AAATTT-------------TCATT---------------TG--GTTA-ATAAG-----CG----ACGGAAAGTT-----TGATTGTCGCTATTCGCAAAAGGCACATAAAA-TG-ATAAA-------TT-CAA-------TTGTT--G--AGGAGGAAC----TTTA-CGCCATTGCATAT--AGCAA-------ATACGGCACAAGTATTTCCCTGAGAAA-CGT-GGCTCCTGAACCTGACCTC-T--------TGT-A---AGCC-ATCGTAA-ACACCGCGCGCAT---TACCAAATT------------A-CT-----CAA-GA--TGAAACCAAGAAAATCCTTCGTAACAAATC----AAA---ATAAAC----AA----------AC----C--C---AATACA-----A----A-G-GGAAT------TTATAC-AT------ACATAT-ATG--A--TT---TTTAT-AATACA-----A----AGA-----T-----TAGAGAATACA-AA-T---------AAATAAA----AG-ATTAT-----ACAACT--CAAGT----AA--------T-GC--AATACAAATGGAAGATGT-G-AC-G---TGCAAATG-AAAAT-------------ATG--A--A--------T------TTATACAATACAAGT-AGAAA-A-T--ATACAATACC
gi|24 : TGGCGGATTCGAC---CTCGACGCG-CCCCATCCCCTTCACAA----ATATGATCTATTTGTTATAGA-------TTTTCTCAAAA--CAC------GATACAAATATACGCTTTATTTT-GT
gi|13 : cagGGCGGATCC--TGCGCCAGGCGCAACCCCG-------CACAATTACATCTGATCT-ATTGGTATAGAAATG-----TCCA--AAAGGCAT------G-TA------TA-GTTC-ATTTT-GTCAGAACTAAGTAGATTCAGAGGACCTCGCCCAC-T--------GGGTCTCAC-CAAGGTTTTGCCCTAG--A---TT-CACTTAAG--GTCT-CAAGACAGGCCCT-----------AGTCGTTTTCTAAACCCCCCCT-CTC----CCGTTCACAAATCT-------------
gi|11 : GCTGATCCGGCGC--CGGGCGCATCCCC-------TCATGATC--ACAT--TCT-TTTTTTAAAGAAATG-----TCCA-ATAAAGCAT------G-TAC--G-----GTTTG--TGT-GTCAGAACTCAGTAGTTTCAGGGGATTTCTNNNNNNN--------NNNNNNNNN-NNNNNNNNNNNNNNNN--N---NN-NNN--NNNNNNNNN-NNNNNNN-NNNNNNNN-NN-NNNNNNNNNNNNNNNN-------NNNNNTC----CTGTTCA-AAATTT-------------TCctagatcaac
gi|23 : ccCACAA----TTATGATTCATTTCTCATTGAAGTA----TGCCA-AAAAAGCATTCAAATA-TAA--GTATACGTCTTAGTTT-TTCCTACCTCAGTAGCATCAGGGG-CTT--------C--------GAACCCtagatccgccgctgaaagta
gi|19 : -TACGTCTTATTTT-GTCAGAACTCAGCTGTTGCAGGAGG--------------------GGG--------AGGGGGTCACCCACT--GGTTCTCCAC--CAGGA-TCTGCTGG--G-GCT-TCAAGAC-ACCCAGCCATTTACTG-------TCTCCCCCTTTCCATTCG-GAAATT-------------TC
gi|8 : caaaaataaCGTTTTATTTTTGTCCGNNNNNNNNNNNNNNNNNNNNNNN--------N--------NNNNNNNNN-NNNNNNNNNNNNNNNN--N---NN-NNN--NNNNNNNNN-NNNNNNN-NNNNNNNA-AT-AT-CAA----TTACTG-------CGTTCTC----CCGTTCA-A--TTT-------------GTTTT---------------TGCAGATAGATAGATCACTCGTTAAACACAAGGTTAAGGTTAAATGTCGCTACCCGAAATAGACGCATAAAAGTG---AAATGTTTTCTT-C-A-------TTTTT--G--AGAGGGCACTTAATTCA-TGCCACAGCATTT--AGCAG-------ATACGGTTC------TTTCCTGCAAAA-CTTAGATTCCCGAACTTTACCtggatctgccact
gi|20 : TATTTT-GTCATAACTC---AGAATC-------TC--------T--------GACTCCCAC-CA-GGAATTCACCCTTG-A---TC-CAC--CAGAGGTCT-CAAGACT-TCTC-CGA-GTCACTCATCCGTTTACTG-------C
gi|2 : tataggtcttataCAGTAGTTTCTGGGGAGTT--------TACCCCCTAGGGCCCCAAACAAAG-ATTACC--ATGGA---TT-CAC--AAGGA-TTT-CAAGACA-GC-CT----AT-G---------TTACTG-------CGT-CTC----CCATTCAGAAATTTGTAGATAGTTTGGTCACTGGTTAAACACAACGTTG--ATTA-AT-AG-----CG----AGAGAAATCT-----TAAATGTCGCTTTTTGCAATGGGCGCATAAAA-GC-AAAAA-------TTACAAGGTTTATTTTTT--T--AGG-GGAAT----TTCA-CGCAGTTTCATTT--ACCAA-------ATACGGTACATGTACATTCCCGCGAAATCGT-GGATCCTGAACTTGACC-C-TGCACAATGTGT-A---AACCAATTA-AA-ACAC--CTCGCAT---TACCGAATTCGATAAACAATAA-CC-----TAA-GA--TTAAACCAATGAAATCCTTTGCAACAAAAC----TAA---ATAAAC----GG----------TC----C--CT--AAT-----------------GAAATG-----TTATAC-ATTTTAAAATACAA-ATG--GATTT---TTTAC-AATGCAAATACA----AGA-----T-----TATAGATTA----------------AAATTAA----AT-ATTAC-----ACATCA--CA-------AA--------T-GA--AA---AAA--GAAGGTAT-A-AA-A---TACAAATG-AAAAC-------------ATA--C--A----------------TATATAATA-AA---AAAAA-A-T--ATACAATGCtcccctctctcccccgttc
gi|3 : AAAA-TTCATAGA-------TT-TA--------TTCTT--TCTAGGGAGAAC----TTCA-TGCTATTGCA-ATG-AGCAA-------ATACGGTGCATGTACTTTCCTGAGAGA-CGT-TGCTCAGGAA---------------------------AACC-ATCCTTA-ACACCTCTCGCATGCGTAC-AAATT---------------------TAA-AA--TTAAAGTAATGAAATCCTTTGTAACAAACC----AAA---ATAAAC----AA----------TC----C--CTCGGATACACTAAAA----ATG-AAAAA------TTGTAC-A-------ACATAA-ATT--G--TT---TTT-C-AGTACA-----A----------------------------------------------TAAA----AG-ATTAT-----ACAA-------------------------------TACAGATAAAAGAT------------TACAAATA-AAA-----------------G--A------------------TTATACAACGCAGAT-GAAAA-ATT--ATGCAATaaatggaaa
gi|10 : tgatacgaggttgacgagaaagtttgAA-------TTTTTTCG--AG-AGGAAC----TCCA-CGTCATTGCATTT--AGCAACGTATAAATACGGTACGTGTACTTTCCTGCGAAA-C--------------TTGACCTC-G--------TTC-A---AACC-G-CGCATTAC-CCGGGCGCAT---TACCAACTG------------A-TC-----CGATGA--TTAACCCAATGCAGTCCTTTGTAACAAATCTCTTAGAT--ATGTAC----AA----------AC----A--C---AAAATA-----A--------GAAA---------ATAA-AT---------TAC-AT------TTCACTCTACAAATA-A-----A----AGA-----C-----TATAGATTAGA-AA-A---------TAATAAtatacaaatgaaagatacgaaatataaatgaatgtatagaaaaggaaattaattatacatttcaaatgaaaaatgatgcaaatatcgaacaattatacaatatacaatacgaataaagaattcc
gi|16 : t-------TTTTT--G--GTGGGGAAC----ATTA-CGACATTGCATTTTTAGCAA-------AATCAGTACAAG------------AAA-CGT-GGTTCCTGAAGTTGACCTC-G--------TGTAA---AGCA-ATT-TGG-ACACCTCGCACAT---TACCATATT--------------CTATAAACGA-GAACTGAAACCAATAACATCCTTTGc
gi|4 : ttgaatataggcgcattaaagcgattatttttttttttttttttAGGAAA----TGTAACGCCATTGCA------G-AA-------GTGTGGTGCATGTA----CATGGG----CGT-GGCTTCTGAACTTGACCTC-G--------TTT-G---AACT-ATCCTGA-ACACCTCACGTTT---AACCAAATTTGATGAACAATAA-CT-----TAA-CA--TTAAACCAATGAAATCCTTTGTAACAAACC----TAA---ACAATCTCTCAG----------AT----A--C---AATGTA-----A----ATG-AAAAA------TTATAA-AT-------TACAA-ATG--A--TTT--TTTAC-AATTTA-----A----ATAAAACCC-----TATAGAATAC---------------AAATAAA----AA-TTTAT-----ACAA
gi|14 : tataatattttgtaTA-CGATATTGCA------G-AA-------GTGTGGTGCATGTA----CATGGG----CGT-GACTTCTGAACTTGATCTCGT--------TTT-C---ATCT-ATTCTGA-ACACCTCGCGCTT---AACCGAATTCGATGAACGATAA-CT-----TAA-TA--TTAAACCAATGAAATCCATTGTAACAAACC----AAA---ATAAAC----AA----------TC----T--CTCGGATACA-----A----T-G-TAAATGAAAAATTATAC-AT-------TACAA-ATG--A--TT---aacaaaaaaaaaaaaaaattacacaatacaaatataaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgggaaacattcaactcaatcaatcgatcaaatgggaaatattcaatatgaaggaaaaaaattaca
gi|7 : TGTATTC--AGCAA-------ATACGGAAC------TTTCCTGCTAAG-TAT-GGCTCTTTCACTAGACCCC-G--------TGT-A---AACC-ATCTGAA-ACAC-------GT---TAC---GTT------------AACT-----TGA-TA--TCAAACCAATAAAATCCTTTGTAACGAACC----AAATCGATGAAA----AATT--------AC----A--C---AATACA-----A----A-T-G--AT------CTCTTC-AC------A-ATGT-ATG-----TC---ATTAG-AATGCA-----A----ATA-----TAACACTATGTAACACA-AA-T---------GAAT------------------------CC--C-GGT----A------------C--AGTATAAAT----GAT----------------AATG-AA------------------G--A--A---------------TTACACAATACAACT-GAAAA-T-T--ATGCAATAC
gi|18 : GCAA-------ATACGGTGCATGTACTTTCCAGCGAAA-CGT-GGGTCC-GAACTTGACCTC-A--------TGT-AGTAAACC-ATCGTGA-ACACCTCACACAT---------ATT---------------T-----AGA-AA--T-AAACCAATGAAATCCTTTGTAACAGGCC----AAA---ATAAAC----AA----------TC----CCTC---AATAT------------------AT------ATATAT-AT------ATATAT-ATgattgggaataatcaaatattacaacgcttaacac
gi|25 : gAACAAATGAAATCCTTCATAACAAATC----AAA---ATAAAC----AA----------TC----C--CTAAGATACA-----ATACCA-GTGGAAA------TTATGCAAT------ACAAATGAAA--A--GT---TACAC-AACACA-----A----A
gi|9 : tgCAATAGAATCCTTCATAATAAATG----AAA---ATGAAC----------------AC----C--C-----CTC-------------G-G------------ATGC-AT------AAAAAT--TGAAA--AT---TTTAT-AATTCA-----AATGCAAA-----T-----CAGACAATACA-AA-T---------AAA-AGATTTTAG-ACTATAGAAAACAATTGGAAAAT----TA--------T-AT--AATACAATTGGAAAAT-----AC-GCATTACAACTG-GA------------------------------------------ATACAACACAAAT-GGAAA-A-T--t
gi|6 : tAACCCTTTGTATCAAACC----AAA---ATATAC----AATCTCTCGTGTACAATAC--C---AATGCA-----A----A-A-G---T------TT-TAC-A-------ATGCAA-ATG--ACTCT---TTTAC-AGTACA-----A------A-----T-----TAAATATCATA-GATT---------AAACAAA----AGTAATGG-----AAAA-----AAAT-----A--------C-GC--AATATAAACTTAAGATTT-ACAT-G---TGAAAATATACAATTCAA---------ATGAAA--A--------G------TTATGCAACACAAATGAGAAATA-T--ATACAATACgaagtatacggatgaaaaatcatgcattgcaatggaaaaaatgaaatattgcaatgtctgacatgccat
gi|17 : GAGAATACA-AA-TGGAAGTTTGAAATAGA----AA-AT-AT-----ACAACA--CAATTTAGAAA--------T-ATTAAATACAAATGTAA-ATATAG-AA-G---TACAAATG-AAAA--------------ATT--A------------------TTGT-CAATACAAAA-GGAAA-ATT--ATACAATtatttgaagatataaatacaagtgaaaatataaaatacatattaaaaaattatacattacaaatggaaaatacacattacaaatggaaaaaaaattatacagtgtgaattctttttaataaatacggaaaagatcaaatattgcaacgttaggca
gi|6 : tcaaaggggcattatatagGAAAATATACAA-TTC-------AAATGAA----AA-GTTAT-----GCAACA--CAAAT----GAGAAATATAT-AC--AATACTATTTGAAGATAT-A-A--A---TACAAGTG-AAAAT-------------ATA--A--AATACATATTAAAAAATTATACATTACAAAT-GGAAA-A-T--ACACATTACtcaaacaagaataaattactattcaacgtttgacatgctat
gi|5 : aaccctttgtatcaaaccaaaatatacaatctctcgtgtacaataccaatgcaaaagttttacaatgcaaatgactcttttacagtacaaattaaatatcatagattaaacaaaagtaatggaaaaaaatacgcaatataaacttaagatttacatgtACA-AA-TCA-------AAATAAA----CA-ATCA----------CT--CGGAT----AC--------TTGT--AATACAAATGAAAGATTT-T-GCAA---TACAAATG-GAAATCATGCATTTACAAATG--AACA--------T------TTACATAATATACAT-AAAAA-A-T--ATAGAATACaaatggaaaaaaaattatacagtgtgaattctttttaataaatacggaaaagatcaaatattgcaacgttaggca
gi|26 : agctagtgatgtctcaataagagttaaaatctcgcgaagagaggtcgttgacgaatgaaatccttcatcataA--------T-AC--AATACAAATGGAA-AT------C-A---TGCAA-TA-AAAAT-------------G-A--A--A--------TG-----TTACACATTACAAAT-AGAAA-A-T--ATAGAATACaaatggaaaagtgtacaattatatgcgtagaaaatgtacattacacattcaaagttatacagttcaaatggaaactatagaaaacacatcgaaaattatacaatacaaatgaaatgaaaaattatacaacatgaatagaaaatatacagtgcaaatggagaattatagaatagaaaaggaaaatttcaaataaattgcaatgtttgacatgcca
gi|21 : agA--------T-AC--AATACAGATGGAAAATAT-ACAC-----TACAGATG-GAAA----------------------A--------T--------ATACAACACAAAT--GAAA-A-TTCATGCAaaatggaa
gi|4 : atagaaaagataaaaagaggaattCAAA-A-AAAAA-------------AAA--A--A--------A------TTACACAATACAAAT-ATAAA-A-T--gatcaaatattgcaacgtttaatatgtc
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): AAAAGGTTTATAATACAATTAAAAGATTATACAACTTAAAGAAGAAAAAATATTATTTACAAATGGAAAATAACAATGTACAATACTATGATACAATTCAGTTGAAAAATCATACTATAGCAAAATAGAAAATATACCAATTACAATTTTCAAAAGAAGTGTACAATATGTTTTTTTTTTTAGCAATACAATTGTAAAAGATCAAATATTGCTACGTTTGACATGTCA
Unaligned ( gi|15 ): ATTATACAACTCATATGGAAAATGTAGAATACATACATGTATATATGGAAAATTACACAATAATTATACTTGAAAAAGTATACAGTATAAATGAATATAAACAATATAAATGGAAAATTAAATACAATATGACTGGAAATATACAAATAAAAATGCTTACAAGGAAAATTCTGAATATTGCAACGTCCGACATGCCAT
Unaligned ( gi|22 ): GCAATATGAATGTTGTTTTTATAATACAAATGGACAATTATACAATACGAATGAAAGAAAAATATATAATACAAATGGAAAAGATCAGATATTGCAACGTTTGGCATGCCATA
Unaligned ( gi|27 ): AATAGAAATGCAAAATTATACATTATAGATGAAACATTTTACAATACAAATAAAAATATCAAATATTGCAACGTTTGA
Unaligned ( gi|28 ): ATACGATTGAAAATACATTACAAATGGGAAAAGATAAATTTTGCGACGATAGGCATGCCAT
Unaligned ( gi|29 ): TCAGTAGAAATACAAATAAATTTATACATCAATACATCATTATCAAAGAAAGGACT
Unaligned ( gi|30 ): TTCAACATGAGGCTGATCAGCGAGGAGAGAAATTTAATTTTCCCAAGGGGA
Unaligned ( gi|31 ): AAATCATTTTTTAAAAATTCAAATATTGCAACGTTGCAT
Alignments
lowQualScore : 111 22 33333333333333333 1 111111111111 222222 1111 1111 33333333333333333333 11111111 55555555555555 22222222 1111 111 777777777777777777 2222222222 11 1 444444444444 1111 11111 444444444444444444444444444 11111 1111 11111 1111111 111111111111 8888888888888888888888 11111111 888888888888888888888888888888888888888888888 2222222222222222 3333333333 111111111111 1111111111111111 22222222222 1111111111 33333333333333333333333333333333333333333333333333 1111111111111 333333 444444444444444444444444444444444444
lowQualScore : 0 2 999 2 22 77 66666666666666666 0 1 3 0 999999999999 333333 6666 2 0 0000 5 0 11 1 99999999999999999999 4 66 88 66666666 1 8 6 0 88 11111111111111 66 1 11111111 4444 888 0 444444444444444444 8888888888 88 1 5 111111111111 1 1 1 1111 222 1 0 66666 444444444444444444444444444 5 22222 6 2222 00000 3333333 3 3 5 2 6666 4 0 2 777777777777 4 4 1 0 2 8888888888888888888888 55 3 6666 555 44 77777 44444444 3 2 1 000000000000000000000000000000000000000000000 3333333333333333 1 1111111111 7777 3 555555555555 1111111111111111 44 44444444444 0000000000 777 66666666666666666666666666666666666666666666666666 3333333333333 5 33 222222 2 2 2 888888888888888888888888888888888888 2 444 2 2 5 2
lowQualScore : . . ... . .. .. ................. . . . . ............ ...... .... . . .... . . .. . .................... . .. .. ........ . . . . .. .............. .. . ........ .... ... . .................. .......... .. . . ............ . . . .... ... . . ..... ........................... . ..... . .... ..... ....... . . . . .... . . . ............ . . . . . ...................... .. . .... ... .. ..... ........ . . . ............................................. ................ . .......... .... . ............ ................ .. ........... .......... ... .................................................. ............. . .. ...... . . . .................................... . ... . . . .
lowQualScore : 2 5 000 5 00 55 44444444444444444 6 0 8 8 888888888888 000000 2222 5 1 6666 0 2 66 6 99999999999999999999 6 88 55 00000000 0 5 7 8 00 00000000000000 22 0 22222222 2222 000 8 222222222222222222 3333333333 00 0 0 555555555555 0 0 0 3333 333 0 7 55555 999999999999999999999999999 7 99999 6 1111 88888 0000000 9 4 8 5 7777 0 7 2 000000000000 4 4 0 9 2 3333333333333333333333 44 1 1111 444 22 11111 22222222 1 1 4 555555555555555555555555555555555555555555555 9999999999999999 0 5555555555 1111 3 333333333333 4444444444444444 22 44444444444 7777777777 555 77777777777777777777777777777777777777777777777777 1111111111111 3 99 666666 9 7 5 666666666666666666666666666666666666 4 111 5 5 3 9
consensus : TGGCGGATCCGGCGC-CCGGGCGCAACCCCGTC----ACGAT--CA----TATGATCTATTTNTTATAGAAATG----TTC-CA-AAAAAGCAT------GTACGTATACGTTTTAT----TTT-GTCAGAACTCAGTAGTTTCAGGGGACTT-------T--------GGGCCCCAC-CAAGGNNTCGCCCTNGA----TTCACNAGAAGTCT-CAAGAC-GGCTCTCGA-AT-A-C-CAGCCGTTTACTG------CGTCCTC----CCGTTC-A-AAATTT-------------TC--CTGGTTAAACACAACGTTGCAGNTAGATAGATCACTCGTTAAANANAAGNCTAAG-TTAAATGTCGCTATTCGCAATAGGCGCATAAAA-CGA-AAA-------TT-CA-------A-------T-TTTT--G--AGGGGGAAC----TTCACGCCATTGCATTT--AGCAA-------ATACGGTGCATGTACTTTCCTGCGAAA-CGT-GGCTCCTGAACTTGACCTCG-------T---GTAAACC-AT-CNTGAACACCTCGCGCATTACCGAATTCGAT-AA-C-A-TAACTTGA-NATTAAACCAATG-AAAT----CCTTCGT---A--ACAAACC----AAA--------AT-AAACAATCCCTC------A---ATACA-----A-A-----GG--AAA-T------TTATA---C---AT------ATACAAATG---A--T---TTTT----AC-AATAC-----A-----AAN----A-----TTA-TAGAAT--ACAAA-T---------AAATA---A----AAN--ATTATACAACAC------------AA----AT----N------A--------TA--C--AATACAAATGGAAA--A---------T-AT--A--AC-GTA-CAAATG-AAA-AT-----AT---GAA---------------T------TATACA-ATACAA---ATG-GAAA-A-T-ATACAATAC
Reference ( family-2042 ) : TGGCGGATCCGGCGC-CCGGGCGCG-CCCCGTC----ACGAT--CA----TATGATCTATTTNTTATAGAAATG----TTC-CA-AAAAAGCAT------GTACGTATACGTTTTAT----TTT-GTCAGAACTCAGTAGNTTCAGGGGACTT-------T--------GGGCCCCAC-CAAGGNNTTACCCNNTA----TTCACNAGGAGTCT-CAAGAC-GGCTCTCGA-AT-A-C-CAGCCGTTTACTG------CGTCCTC----CCGTTC-A-AAATTT-------------TC-NCTGGTTAAACACAACGTTGCAGNTAGATAGGTCACTCGTTAAANANAAGNCTAAGGTTAAATGTCGCTNCCCGNAATGGGCGCATAAAA-TNA-AAA-------TT-CA-------A-------T-TTTT--G--AGGGGGAAC----TTCACGCCATTGCATTT--AGCAA-------ATACGGTGCATGTACTTTCCTGCGAAA-CGT-GGCTCCTGAACTTGACCTCG-------T---GTAAACC-AT-CNTGAACACCTCGCGCATTACCGAATT-GAT-AA-C-A-TAACTTGA-NATTAAACCAATG-AAAT----CCTTTGT---A--ACAAACC----AAA--------AT-AAACAANCCCT-------A---ATACA-----A-A-----GG--AAA-T------TTATA---C---AT------ATACANATG---A--T---TTTT----AC-AATAC-----A-----AAN----A-----TTA-NAGAAT--ACAAA-T---------AAATA---A----AAG--ATTATACAACNC------------AA----AT----A------A--------TA--C--AATACAAATGGAAG--A---------T-AT--A--AC-GTA-CAAATG-AAA-AT-----AT---GAA---------------T------TATACA-ATACAA---ATG-GAAA-A-T-ATACAATAC
gi|1 : TGGCGGATCCAGCGCGCCGGGCACAACCCCATCCCTCACAA----A----TATGATTT-TTTTTTATACAAATACAGTTTC-CACAAAAAGCAC------GTACGT-TACGTTTTAT----TTT-GTCAGAATTCGGTAGTATCAGGGGACTT-------T--------GGACCCCAC-CAAGGCGTTGTCCAATA----CTCACAAGAAGTCT-CAAGAC-AGCTCTCAA-AT-ATT-CAGCCGTTTACTG------CATACTC----CCGTTC-A-AAATTT-------------TCATTTGGTTAA
gi|1 : AAGTTTGATTGTCGCTATTCGCAAAAGGCACATAAAA-TGATAAA-------TT-CA-------A-------T-TGTT--G--AGGAGGAAC----TTTACGCCATTGCATAT--AGCAA-------ATACGGCACAAGTATTTCCCTGAGAAA-CGT-GGCTCCTGAACCTGACCTCT-------T---GTAAGCC-AT-CGTAAACACCGCGCGCATTACCAAATT--------------ACTCAA-GATGAAACCAAGA-AAAT----CCTTCGT---A--ACAAATC----AAA--------AT-AAACAAACCC--------A---ATACA-----A-A-----GG--GAA-T------TTATA---C---AT------ACATATATG---A--T---TTTT----AT-AATAC-----A-----AAG----A-----TTA-GAGAAT--ACAAA-T---------AAATA---A----AAG--ATTATACAACTC------------AA----GT----A------A--------TG--C--AATACAAATGGAAG--A---------T-GT--G--AC-GTG-CAAATG-AAA-AT-----AT---GAAT--------------T------TATACA-ATACAA---GTA-GAAA-A-T-ATACAATACtaagcgacggaaagtttgattgtcgctattcgcaaaaggcacataaaatgataaattcaattgttgaggaggaactttacgccattgcatatagcaaatacggcacaagtatttccctgagaaacgtggctcctgaacctgacctcttgtaagccatcgtaaacaccgcgcgcattaccaaattactcaagatgaaaccaagaaaatccttcgtaacaaatcaaaataaacaaacccaatacaaagggaatttatacatacatatatgatttttataatacaaagattagagaatacaaataaataaaagattatacaactcaagtaatgcaatacaaatggaagatgtgacgtgcaaatgaaaatatgaatttatacaatacaagtagaaaatatacaatacc
gi|10 : tggcggatccagcgcgccgggcacaaccccatccctcacaaatatgatttttttttatacaaatacagtttccacaaaaagcacgtacgttacgttttattttgtcagaattcggtagtatcaggggactttggaccccaccaaggcgttgtccaatactcacaagaagtctcaagacagctctcaaatattcagccgtttactgcatactcccgttcaaaattttcatttggttaataagcgacggaA-------A-------T-TTTTTCG--AGAGG-AAC----TCCACGTCATTGCATTT--AGCAACGTATAAATACGGTACGTGTACTTTCCTGCGA---------------AACTTGACCTCG-------T---TCAAACC-GCGCATT-AC-CCGGGCGCATTACC-AACT-GAT------------CCGATGATTAACCCAATG-CAGT----CCTTTGT---A--ACAAATCTCTTAGAT-------AT-GTACAAACAC--------A---AAATA-----A--------G--AAA----------ATA---A---AT-------TACATTTC---A------CTCT----ACAAATA------A-----AAG----A-----CTA-TAGATT--AGAAA-A---------TAATA---A----c
gi|11 : tGCTGATCCGGCGC-C-GGGCGCA-TCCCCTC----ATGAT--CA----CAT--TCT-TTTTTTAAAGAAATG----T-C-CA-ATAAAGCAT------GTACG-----GTTTG------TGT-GTCAGAACTCAGTAGTTTCAGGGGATTT-------c
gi|13 : ccGGCGGATCCTGCGC-C-AGGCGCAACCCCG-C----ACAATTACA----TCTGATCTATTGGT-ATAGAAATG----TCC----AAAAGGCAT------GTA----TA-GTTC-AT----TTT-GTCAGAACTAAGTAGATTCAGAGGACCTCGCCCACT--------GGGTCTCAC-CAAGGTTTTGCCCTAGA----TTCACTTAAGGTCT-CAAGACAGGCCCT------------AGTCGTTTTCTAAACCCCCCCTCTC----CCGTTC-ACAAATCT-------------ctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctgttcaaaattttctagatccgccgctgaaagta
gi|14 : ACGATATTGCA------G-AA-------GTGTGGTGCATGTAC----ATGGG----CGT-GACTTCTGAACTTGATCTCG-------T---TTTCATCTAT-TCTGAACACCTCGCGCTTAACCGAATTCGATGAA-CGA-TAACTTAA-TATTAAACCAATG-AAAT----CCATTGT---A--ACAAACC----AAA--------AT-AAACAATCTCTCG-----G---ATACA-----A-T-----GT--AAA-TGAAAAATTATA---C---AT-------TACAAATG---A--T---Tctagatcaac
gi|15 : tA---------------T------TATACA-ACTCAT---ATG-GAAA-A-T-GTAGAATAC
gi|16 : -------T-TTTT--G--GTGGGGAAC----ATTACGACATTGCATTTTTAGCAA-------AATCAGTACA---A---------GAAA-CGT-GGTTCCTGAAGTTGACCTCG-------T---GTAAAGC-AA-TTTGGACACCTCGCACATTACCATATTCTAT-A-------AACGAGA-ACTGAAACCAATA-ACAT----CCTTTGatacatgtatatatggaaaattacacaataattatacttgaaaaagtatacagtataaatgaatataaacaatataaatggaaaattaaatacaatatgactggaaatatacaaataaaaatgcttacaaggaaaattctgaatattgcaacgtccgacatgccat
gi|17 : ttgaatataggcgcattaaagcgattatttttttttttttttttAT----A-----TAG-GAGAAT--ACAAA-TGGAAGTTTGAAATA---G----AAA--AT-ATACAACAC------------AA----TTTAGAA------A--------TA--TTAAATACAAATGTAA---A---------T-AT--AG-AA-GTA-CAAATG-AAA-A------AT---TA----------------T------TGT-CA-ATACAA---AAG-GAAA-ATT-ATACAAT
gi|18 : tcaaaggggcattGCAA-------ATACGGTGCATGTACTTTCCAGCGAAA-CGT-GGGTCC-GAACTTGACCTCA-------TGTAGTAAACC-AT-CGTGAACACCTCACACAT------ATT---T-A------------GA-AA-TAAACCAATG-AAAT----CCTTTGT---A--ACAGGCC----AAA--------AT-AAACAATCCCTC------A---ATAT--------------------A-T------ATATA---T---AT------ATATATATtcaaacaagaataaattactattcaacgtttgacatgctat
gi|19 : gATACGTCTTAT----TTT-GTCAGAACTCAGCTGTTGCAGGAGG-------------------GGG--------AGGGGGTCACCCACTGGTTCTCCACCAGGA-TCTGCTGG---GGCT-TCAAGAC-ACC-CAGCCATTTACTG------TCTCCCCCTTTCCATTCGG-AAATTT-----------------CTGG
gi|2 : caaaaataCAGTAGTTTCTGGGGAGTT-------TACCCCCTAGGGCCCCAAACAAAGA-TTACCATGGA----TTCACAAGGA-TTT-CAAGAC-AGC-CT----AT-G----------TTACTG------CGTC-TC----CCATTC-AGAAATTTGTAGATAGTTTGGTC-ACTGGTTAAACACAACGTTG--ATTA-ATAG------CG----AGAGAAATCT-----TAAATGTCGCTTTTTGCAATGGGCGCATAAAAGCAA-AAA-------TTACA-------AGGTTTATT-TTTT--T--AGGGG-AAT----TTCACGCAGTTTCATTT--ACCAA-------ATACGGTACATGTACATTCCCGCGAAATCGT-GGATCCTGAACTTGACCCTGCACAATGT---GTAAACC-AA-TTAAAACACCTCGC--ATTACCGAATTCGAT-AAAC-AATAACCTAA-GATTAAACCAATG-AAAT----CCTTTGC---A--ACAAAAC----TAA--------AT-AAACGGTCCCT-------A---AT-----------------G--AAA-TG-----TTATA---C---ATTTTAAAATACAAATG---GATT---TTTT----AC-AATGC-----A-----AAT----A-----C---AAGATT--ATAGA-TTA-------AAATT---A----AAT--ATTACACATCAC------------AA----AT----G------A---------------AA---AAA--GAAG--G---------T-AT--A--AA-ATA-CAAATG-AAA-AC-----AT---ACA---------------T-------ATATA-ATAAAA---A----AAA-A-T-ATACAATGCatctgccact
gi|20 : TATAGGTCTTATATATTTT-GTCATAACTCAG-AATCTC---TGACT---------------------CCCAC-CAGGAATTCACCCTTGA----TCCACCAGAGGTCT-CAAGAC-TTCTC-CGA-GTCA-CTCATCCGTTTACTG------C-TCCCC----TCaaatggaaa
gi|21 : A-TAGAA---A-AGA-T---------AAA-A---A----GAGGAATTATACAATAC------------AG----AT----GGAAAATA--------TA--C--ACTACAGATGGAAA--A---------T-AT--ACAAC---A-CAAATG-AAA-AT----------------------------T------CATGCAGAT-CAA---ATtctcccccgttc
gi|21 : AGATA-AAA-AG-----AG---GAA---------------T------TATACA-ATACAG---ATG-GAAA-A-T-ATACACTACattgcaacgtttaatatgtc
gi|21 : atagaaaA----AT----T------A--------TA--C--AATACAGATGGAAA--A---------T-AT--AC-AC--TA-CAGATG-GAA-A------A-----------------------------TATACA-ACACAA---ATG-AAAA-agatggaaaatatacaacacaaatgaaaattcatgcagatcaaatattgcaacgtttaatatgtc
gi|22 : atagaaaagataaaaagaggA-AT-----AT---GAA---------------TGTTGTTTTTATA-ATACAA---ATG-GACA-ATT-ATACAATACttcatgcagatcaaatattgcaacgtttaatatgtc
gi|22 : gc--------TA--T--AATACAAATGGACA--A---------TTAT--A--CA-ATA-CGAATG-AAA-GA-----A-----AA---------------A------TATATA-ATACAA---ATG-GAAA-A-G-ATgaatgaaagaaaaatatataatacaaatggaaaagatcagatattgcaacgtttggcatgccata
gi|23 : gcaatatgaatgttgttttC----ACAAT--------TATGATTCATTTCTCATTGAAGTA----TGC-CA-AAAAAGCATTCAAATATAAGTATACGTCTTAG----TTT-TTCCTACCTCAGTAGCATCAGGGG-CTT-------C--------GAACCCcagatattgcaacgtttggcatgccata
gi|24 : TGGCGGATTCGAC-C-TCGA-CGCG-CCCCATC----CCCTT--CACAAATATGATCTATTTGTTATAG--ATT----TTCTCA-AAACACGAT------ACAAATATACGCTTTAT----TTT-GT
gi|25 : cagTGAACAAATG-AAAT----CCTTCAT---A--ACAAATC----AAA--------AT-AAACAATCCCT-------AAG-ATACA-----ATACCAGTGG--AAA--------TTATG---C---A-------ATACAAATGAAAA--G---TTAC----AC-AACAC-----A-----AA
gi|26 : ------A--------TA--C--AATACAAATGGAAATCA---------T-GC--A--A---TA-AAAATG-AAA---------T---G-----------------T------TACACA-TTACAA---ATA-GAAA-A-T-ATAGAATACt
gi|3 : ag-TGA-AAA-------TT-CATAGATTTA-------T-TCTT--TCTAGGGAGAAC----TTCATGCTATTGCAATG--AGCAA-------ATACGGTGCATGTACTTTCCTGAGAGA-CGT-TGCTCAGGAA------------------------AACC-AT-CCTTAACACCTCTCGCAT----GCGT-------A-C-A--AATTTAA-AATTAAAGTAATG-AAAT----CCTTTGT---A--ACAAACC----AAA--------AT-AAACAATCCCTCG-----G---ATACACTAAAA-AT----GA--AAA-A------TTGTA---C---A-------ACATAAATT---G--T---TTTTCAGTAC-AATA------A-----AAG----A-----TTA-TACAAT--ACAGA-T---------AAA-----------AG--ATTACA-AATAA------------AAG---AT----T------A--------TA--C--AACGCAGATGAAAA--A---------TTATGCA--ATTATA-CAAATG-AAAGAT-----AC---GAA---------------A------TATA-A-ATG-AATGTATA-GAAA-A-aaatggaa
gi|4 : tgatacgaggttgacgagaaagttA-------A-------TATTTT--G--TAAGGAAAT----GTAACGCCATTGCA------G-AA-------GTGTGGTGCATGTAC----ATGGG----CGT-GGCTTCTGAACTTGACCTCG-------T---TTGAACT-AT-CCTGAACACCTCACGTTTAACCAAATTTGATGAA-C-AATAACTTAA-CATTAAACCAATG-AAAT----CCTTTGT---A--ACAAACC----------------T-AAACAATCTCTCA-----G---ATACA-----A-T-----GT--AAA-TGAAAAATTATA---A---AT-------TACAAATG---AT-T---TTTT----AC-AATTT-----A-----AAT----AAAACCCTA-TAGAAT--AC--------------AAATA---A----AAA--TTTATACAAAACAAAAAAAAAAAAAA----AT----T------A--------CA--C--AATACAAATATAAA--A---------T-ggaaattaattatacatttcaaatgaaaaatgatgcaaatatcgaacaattatacaatatacaatacgaataaagaattcc
gi|5 : tatACGAATG-AAAT----CCTTCATCATA--ACAAATC----AAA--------AT-AAACAATCACT--------------C--------------GG--ATA-C------TTGTA---------------ATACAAATG---A--AAGATTTT----GC-AATAC-----A-----AATGGAAA-----TCA-T-GCATTTACAAA-T---------GAACATTTA----CAT--AATATACATAAA------------AA----AT----A---------------TA--G--AATACAAATGGAAA--AGTGTACAATT-AT--AT-GC-GTAGAAAATG-TAC-ATTACACATTCAAAG---------------T------TATACA-GTTCAA---ATG-GAAA-C-T-ATAGAAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgggaaacattcaactcaatcaatcgatcaaatgggaaatattcaatatgaaggaaaaaaattaca
gi|5 : agctagtgatgtctcaataagagttaaaatctcgcgaagagaggtcgttg--AAA-G------TTATA---C---A-------GTTCAAATGGA-A--A---CTAT----AG-AAAAC-----ACATCGAAA----A-----TTA-TACAAT--ACAAA-TG--------AAATG---A----AAA--ATTATACAACAT------------GA----AT----A--------------------------------GAAA--A---------T-AT--A--CA-GTG-CAAATG-GA--------------GAA---------------T------TATAGA-ATAGAA---AAG-GAAA-A-T-acatcgaaaattatacaatacaaatgaaatgaaaaattatacaacatgaatagaaaatatacagtgcaaatggagaattatagaatagaaaaggaaaatttcaaataaattgcaatgtttgacatgcca
gi|6 : agctagtgatgtctcaataagagttaaaatctcgcgaagagaggtcgttgacgaatgaaatccttcatcataacaaatcaaaataaacaatcactcggatacttgtaatacaaatgaaagattttgcaatacaaatggaaatcatgcatttacaaatgaacatttacataatatacataaaaaatatagaatacaaatggaaaagtgtacaattatatgcgtagaaaatgtacattacacattcAAC----CCTTTGT---A--TCAAACC----AAA--------AT-ATACAATCTCTCGTGTACA---ATACC-----A-A-----TGCAAAA-G------TTTTA---C---A-------ATGCAAATG---ACTC---TTTT----AC-AGTAC-----A-----A------A-----TTA-AATATC--ATAGATT---------AAACA---A----AAG---TAATGGAA---------------AA----A-----A------A--------TACGC--AATATAAACTTAAG--A---------T-TT--AC-AT-GTG-AAAATATACA-ATTCAA-AT---GAAAAG------------T------TATGCA-ACACAA---ATGAGAAATA-T-ATACAATACttcaaataaattgcaatgtttgacatgcca
gi|6 : CAATGCAAATGACTCTTTTAC---AGTACAAATT----AAATATCATAGATTAAACAAAAG-T-------A---ATGGA-----A-A---------AAA----------ATA---CGCAAT------ATAAACTTA---A--G---ATTT----AC-A-TGT-----G-----AAA----A-----T-------AT--ACAAT-TC--------AAATG---A----AAA--GTTATGCAACAC------------AA----AT----G------AGAAATATATA--C--AATACTATTTGAAG--A---------T-AT--A--A--ATA-CAAGTG-AAA-AT-----AT---AAAATACATATTAAAAAAT------TATACA-TTACAA---ATG-GAAA-A-T-ACACATTACtatttgaagatataaatacaagtgaaaatataaaatacatattaaaaaattatacattacaaatggaaaatacacattacaaatggaaaaaaaattatacagtgtgaattctttttaataaatacggaaaagatcaaatattgcaacgttaggca
gi|7 : aaccctttgtatcaaaccaaaatatacaatctctcgtgtacaataccaatgcaaaagttttaTGTATTC--AGCAA-------ATACGG---A---ACTTTCCTGCTAAG-TAT-GGCTCTTTCACTAGACCCCG-------T---GTAAACC-AT-CTGAAACACGTTACGT-----------------------TAACTTGA-TATCAAACCAATA-AAAT----CCTTTGT---A--ACGAACC-----AA--------AT--------------------------CG-----A-T-----GA--AAA-A------TTACA---C---A-------ATACAAATG---ATCT---CTTC----AC-AATGT------------AT----G-----TCATTAGAAT--GCAAA-T-----------AT---------AAC--ACTATGTAACAC------------AA----AT----G----------------------AATCC---CGG---------------T-AC--A-----GTA-TAAATG-ATA-ATG----AA---GAA---------------T------TACACA-ATACAA---CTG-AAAA-T-T-ATGCAATACaaatggaaaaaaaattatacagtgtgaattctttttaataaatacggaaaagatcaaatattgcaacgttaggca
gi|8 : CGTTTTAT----TTTTGTCCGNNNNNNNNNNNNNNNNNNNNNNN-------N--------NNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNN-NNNNNN-NNNNNNNNA-AT-A-T-CAA----TTACTG------CGTTCTC----CCGTTC-A-A----T-------------T----TGTTT----------TTGCAGATAGATAGATCACTCGTTAAACACAAGGTTAAGGTTAAATGTCGCTACCCGAAATAGACGCATAAAA-GTG-AAATGTTTTCTT-C--------A-------T-TTTT--G--AGAGGGCACTTAATTCATGCCACAGCATTT--AGCAG-------ATACGGT---T---CTTTCCTGCAAAA-CTTAGATTCCCGAACTTTACCgattgggaataatcaaatattacaacgcttaacac
gi|9 : CAATA-GAAT----CCTTCAT---A--ATAAATG----AAA--------AT-GAAC-ACCCCTCGG----ATGCATAAA-----A-ATT---GA--AAATT------TTATAATTC---AA------ATGCAAATC---A---------G----AC-AATACAAATAA-----AAG----A-----TTT-TAGACT--ATAGA-----------AAACA---ATTGGAAA--ATTATATAATAC------------AATTGGAA----A------A--------TACGC--ATTACAACTGGA----A---------T-AC--A--AC---A-CAAATG-GAA-A------AT---GAA---------------G------T------ATACGG---ATG-AAAA-A-TCATGCA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAAAGGTTTATAATACAATTAAAAGATTATACAACTTAAAGAAGAAAAAATATTATTTACAAATGGAAAATAACAATGTACAATACTATGATACAATTCAGTTGAAAAATCATACTATAGCAAAATAGAAAATATACCAATTACAATTTTCAAAAGAAGTGTACAATATGTTTTTTTTTTTAGCAATACAATTGTAAAAGATCAAATATTGCTACGTTTGACATGTCA
Unaligned ( gi|27 ): AATAGAAATGCAAAATTATACATTATAGATGAAACATTTTACAATACAAATAAAAATATCAAATATTGCAACGTTTGA
Unaligned ( gi|28 ): ATACGATTGAAAATACATTACAAATGGGAAAAGATAAATTTTGCGACGATAGGCATGCCAT
Unaligned ( gi|29 ): TCAGTAGAAATACAAATAAATTTATACATCAATACATCATTATCAAAGAAAGGACT
Unaligned ( gi|30 ): TTCAACATGAGGCTGATCAGCGAGGAGAGAAATTTAATTTTCCCAAGGGGA
Unaligned ( gi|31 ): AAATCATTTTTTAAAAATTCAAATATTGCAACGTTGCAT
Alignments
lowQualScore : 111 1 111 333333333333333 1 111111111111 222222 1111 1111 33333333333333333333 111 55555555555555 22222222 1111 111 888888888888888888 2222222222 11 1 333333333333 111 1 4444444444444444444444444444444444 11111 1111 11111 1111111 1111111 77777777777777777777777 55555555555555555555555555555555555555555555555555555555555555555555555555 333333333333333333333333333333 3333333333333333333333 4444444444444444444444444444444444444444444 111111111 2222222 666666666666666666666666666666666666
lowQualScore : 0 2 999 0 777 4 222222222222222 0 1 3 0 999999999999 333333 6666 2 0 0000 5 0 0 1 99999999999999999999 4 66 22 5 777 111 1 8 6 0 88 11111111111111 66 1 11111111 4444 888 0 000000000000000000 8888888888 88 1 5 444444444444 1 1 1 999 3 2222222222222222222222222222222222 5 22222 6 2222 00000 3333333 3 3 5 2 6666 4 0 2 4444444 8888 4 4 1 0 11 2 88888888888888888888888 333 1 1 555 7777 3 0 33333333333333333333333333333333333333333333333333333333333333333333333333 7777 3 444444444444444444444444444444 3 44 555 1 4444444444444444444444 7777 555 1 9999999999999999999999999999999999999999999 666 444 2 66 000000000 2 33 5555555 2 000000000000000000000000000000000000 2 2 2 5 2
lowQualScore : . . ... . ... . ............... . . . . ............ ...... .... . . .... . . . . .................... . .. .. . ... ... . . . . .. .............. .. . ........ .... ... . .................. .......... .. . . ............ . . . ... . .................................. . ..... . .... ..... ....... . . . . .... . . . ....... .... . . . . .. . ....................... ... . . ... .... . . .......................................................................... .... . .............................. . .. ... . ...................... .... ... . ........................................... ... ... . .. ......... . .. ....... . .................................... . . . . .
lowQualScore : 2 5 000 0 555 0 666666666666666 6 0 8 8 888888888888 000000 2222 5 1 6666 0 2 6 6 99999999999999999999 6 88 00 5 222 777 0 5 7 8 00 00000000000000 22 0 22222222 2222 000 8 000000000000000000 3333333333 00 0 0 000000000000 0 0 0 777 3 5555555555555555555555555555555555 7 99999 6 1111 88888 0000000 9 4 8 5 7777 0 7 2 4444444 9999 4 4 0 9 00 2 44444444444444444444444 222 0 1 888 1111 3 2 22222222222222222222222222222222222222222222222222222222222222222222222222 1111 3 444444444444444444444444444444 3 22 999 5 8888888888888888888888 1111 666 6 7777777777777777777777777777777777777777777 999 777 7 33 777777777 7 99 7777777 9 444444444444444444444444444444444444 4 5 5 3 7
consensus : TGGCGGATCCGGCGC-CCGG-GCGC---ANCCCCGTC----ACAAT--CATATGATCTATTTNTTATAGAAATG----TTC-CA-AAAAAGCAT------GTACGTATACGTTTTAT----TTT-GTCAGAACTCAGTAGTTTCAGGGGACTT-------T--------GGGCCCCAC-CAAGGNTTCGCCC-TNGATT---CACNAGAAGTCT-CAAGAC-GGCTCTCGA-AT-A-C-CAGCCGTTTACTG------CGTCCTC----CCGTTC-A-AAATTT-------------TCA-CTGGTTAAACACAACGTTGCAGNTAGATAGATCACTCGTTAAANANAAGNCTAA-GTTAAAT-GTCGCTATTCGCAATAGGCGCATAAAAGCGA-AA------ATT-CA-------A-------T-TTTT--G--AGGGGGAAC----TTCACGCCATTGCATTT--AGCAA-------ATACGGTGCATGTACTTTCCTGCGAAA-CGT-GGCTCCTGAACTTGACCT-------CGT---GTAAACC-AT-CNTGAACACCTCGCGCATTACCGA---ATTCGAT-A-C-ATAACTTAANATTAAACCAATGAAATCCTTCGT---AACAAACC----AAA-ATAAACAATCCCT------C-G-AT-ACA--AA----G--N--AAAT------TTA---TACAT------ATACAAATG---A---TTTT----TAC-AATNC-----A-----A----AN----A-----TTA-TAGA--A--TACAAA--T----------AA-ATA---AA----AN--ATTATACAACAC------------AA-------ATT------A------------TAC--A---ATACAAATG-GAAA--A---------T-AT--A-ACG---TA-CAAATGAAAAT-----AT---G------------AA-T------TATACA-ATACAAATG-GAAA-A-T-ATACAATAC
Reference ( family-2042 ) : TGGCGGATCCGGCGC-CCGG-GCGC---AACCCCGTC----ACGAT--CATATGATCTATTTNTTATAGAAATG----TTC-CA-AAAAAGCAT------GTACGTATACGTTTTAT----TTT-GTCAGAACTCAGTAGTTTCAGGGGACTT-------T--------GGGCCCCAC-CAAGGNNTCGCCC-TNGATT---CACNAGAAGTCT-CAAGAC-GGCTCTCGA-AT-A-C-CAGCCGTTTACTG------CGTCCTC----CCGTTC-A-AAATTT-------------TC--CTGGTTAAACACAACGTTGCAGNTAGATAGATCACTCGTTAAANANAAGNCTAA-GTTAAAT-GTCGCTATTCGCAATAGGCGCATAAAA-CGA-AA------ATT-CA-------A-------T-TTTT--G--AGGGGGAAC----TTCACGCCATTGCATTT--AGCAA-------ATACGGTGCATGTACTTTCCTGCGAAA-CGT-GGCTCCTGAACTTGACCT-------CGT---GTAAACC-AT-CNTGAACACCTCGCGCATTACCGA---ATTCGAT-AAC-ATAACTTGANATTAAACCAATGAAATCCTTCGT---AACAAACC----AAA-ATAAACAATCCCT------C-A-AT-ACA--AA----G--G--AAAT------TTA---TACAT------ATACAAATG---A---TTTT----TAC-AATAC-----A-----A----AN----A-----TTA-TAGA--A--TACAAA--T----------AA-ATA---AA----AN--ATTATACAACAC------------AA-------ATN------A------------TAC--A---ATACAAATG-GAAA--A---------T-AT--A-ACG---TA-CAAATGAAAAT-----AT---G------------AA-T------TATACA-ATACAAATG-GAAA-A-T-ATACAATAC
gi|1 : TGGCGGATCCAGCGCGCCGG-GCAC---AACCCCATCCCTCACAA----ATATGATTT-TTTTTTATACAAATACAGTTTC-CACAAAAAGCAC------GTACGT-TACGTTTTAT----TTT-GTCAGAATTCGGTAGTATCAGGGGACTT-------T--------GGACCCCAC-CAAGGCGTTGTCC-AATACT---CACAAGAAGTCT-CAAGAC-AGCTCTCAA-AT-ATT-CAGCCGTTTACTG------CATACTC----CCGTTC-A-AAATTT-------------TCATTTGGTTAA
gi|1 : AA-GTTTGATTGTCGCTATTCGCAAAAGGCACATAAAA-TGATAA------ATT-CA-------A-------T-TGTT--G--AGGAGGAAC----TTTACGCCATTGCATAT--AGCAA-------ATACGGCACAAGTATTTCCCTGAGAAA-CGT-GGCTCCTGAACCTGACCT-------CTT---GTAAGCC-AT-CGTAAACACCGCGCGCATTACCAA---ATT------------ACTCAAGATGAAACCAAGAAAATCCTTCGT---AACAAATC----AAA-ATAAACAAACCC---------A-AT-ACA--AA----G--G--GAAT------TTA---TACAT------ACATATATG---A---TTTT----TAT-AATAC-----A-----A----AG----A-----TTA-GAGA--A--TACAAA--T----------AA-ATA---AA----AG--ATTATACAACTC------------AA-------GTA------A------------TGC--A---ATACAAATG-GAAG--A---------T-GT--G-ACG---TG-CAAATGAAAAT-----AT---G------------AATT------TATACA-ATACAAGTA-GAAA-A-T-ATACAATACtaagcgacggaaagtttgattgtcgctattcgcaaaaggcacataaaatgataaattcaattgttgaggaggaactttacgccattgcatatagcaaatacggcacaagtatttccctgagaaacgtggctcctgaacctgacctcttgtaagccatcgtaaacaccgcgcgcattaccaaattactcaagatgaaaccaagaaaatccttcgtaacaaatcaaaataaacaaacccaatacaaagggaatttatacatacatatatgatttttataatacaaagattagagaatacaaataaataaaagattatacaactcaagtaatgcaatacaaatggaagatgtgacgtgcaaatgaaaatatgaatttatacaatacaagtagaaaatatacaatacc
gi|10 : tggcggatccagcgcgccgggcacaaccccatccctcacaaatatgatttttttttatacaaatacagtttccacaaaaagcacgtacgttacgttttattttgtcagaattcggtagtatcaggggactttggaccccaccaaggcgttgtccaatactcacaagaagtctcaagacagctctcaaatattcagccgtttactgcatactcccgttcaaaattttcatttggttaataagcgacggaA-------A-------T-TTTTTCG--AGAGG-AAC----TCCACGTCATTGCATTT--AGCAACGTATAAATACGGTACGTGTACTTTCCTGCGA---------------AACTTGACCT-------CGT---TCAAACC-GCGCATT-AC-CCGGGCGCATTACCAACTGATCCGAT--------------GATTAACCCAATGCAGTCCTTTGT---AACAAATCTCTTAGATATGTACAAACACA------A-A-ATAAGA--AA----A--T--AAAT------------TACAT-------TTCA------------CTC----TACAAATA------A-----A----AG----A-----CTA-TAGA--T--TAGAAA--A----------TA-ATA---Ac
gi|11 : tGCTGATCCGGCGC-C-GG-GCGC---ATCCCC-TC----ATGAT--CACAT--TCT-TTTTTTAAAGAAATG----T-C-CA-ATAAAGCAT------GTACG-----GTTTG------TGT-GTCAGAACTCAGTAGTTTCAGGGGATTT-------c
gi|13 : ccGGCGGATCCTGCGC-C-AG-GCGC---AACCCCG-C----ACAATTACATCTGATCTATTGGT-ATAGAAATG----TCC----AAAAGGCAT------GTA----TA-GTTC-AT----TTT-GTCAGAACTAAGTAGATTCAGAGGACCTCGCCCACT--------GGGTCTCAC-CAAGGTTTTGCCC-TAGATT---CACTTAAGGTCT-CAAGACAGGCCCT------------AGTCGTTTTCTAAACCCCCCCTCTC----CCGTTC-ACAAATCT-------------ctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctgttcaaaattttctagatccgccgctgaaagta
gi|14 : ACGATATTGCA------G-AA-------GTGTGGTGCATGTAC----ATGGG----CGT-GACTTCTGAACTTGATCT-------CGT---TTTCATCTAT-TCTGAACACCTCGCGCTTAACCGA---ATTCGATGAACGATAACTTAATATTAAACCAATGAAATCCATTGT---AACAAACC----AAA-ATAAACAATCTCT------CGG-AT-ACA--AT----G--T--AAATGAAAAATTA---TACAT-------TACAAATG---A---TTctagatcaac
gi|15 : tA-T------TATACA-ACTCATATG-GAAA-A-T-GTAGAATAC
gi|16 : -------T-TTTT--G--GTGGGGAAC----ATTACGACATTGCATTTTTAGCAA-------AATCAGTACA---A---------GAAA-CGT-GGTTCCTGAAGTTGACCT-------CGT---GTAAAGC-AA-TTTGGACACCTCGCACATTACCAT---ATTCTAT-A-----AACGAGAACTGAAACCAATAACATCCTTTGatacatgtatatatggaaaattacacaataattatacttgaaaaagtatacagtataaatgaatataaacaatataaatggaaaattaaatacaatatgactggaaatatacaaataaaaatgcttacaaggaaaattctgaatattgcaacgtccgacatgccat
gi|17 : ttgaatataggcgcattaaagcgattatttttttttttttttttAGA--A--TACAAA--TGGAAGTTTG-AA-ATA---GA----AA--AT-ATACAACAC------------AA-------TTT------AGAAA--------TATTAA---ATACAAATG-TAAAT-A---------T-AG--A-A-G---TA-CAAATGAAAA------AT---T------------A--T------TGT-CA-ATACAAAAG-GAAA-ATT-ATACAAT
gi|18 : tcaaaggggcattatataggGCAA-------ATACGGTGCATGTACTTTCCAGCGAAA-CGT-GGGTCC-GAACTTGACCT-------CATGTAGTAAACC-AT-CGTGAACACCTCACACAT---------ATT---T-A----------GAAA-TAAACCAATGAAATCCTTTGT---AACAGGCC----AAA-ATAAACAATCCCT------C-A-AT-ATA-----------T--ATAT------ATA---TATAT------ATAtcaaacaagaataaattactattcaacgtttgacatgctat
gi|19 : gATACGTCTTAT----TTT-GTCAGAACTCAGCTGTTGCAGGAGG-------------------GGG--------AGGGGGTCACCCACTGGTTCTCCACCAGGA-TCTGCTGG---GGCT-TCAAGAC-ACC-CAGCCATTTACTG------TCTCCCCCTTTCCATTCGG-AAATTT-----------------CTGGt
gi|2 : caaaaataCAGTAGTTTCTGGGGAGTT-------TACCCCCTAGGGCCCCAAACAAAGATT-ACCA-TGGATT---CACAAGGA-TTT-CAAGAC-AGC-CT----AT-G----------TTACTG------CGTC-TC----CCATTC-AGAAATTTGTAGATAGTTTGGTCA-CTGGTTAAACACAACGTTG--ATTA-ATAG------CG----AGAGAAATCT-----TAAAT-GTCGCTTTTTGCAATGGGCGCATAAAAGCAA-AA------ATTACA-------AGGTTTATT-TTTT--T--AGGGG-AAT----TTCACGCAGTTTCATTT--ACCAA-------ATACGGTACATGTACATTCCCGCGAAATCGT-GGATCCTGAACTTGACCCTGCACAATGT---GTAAACC-AA-TTAAAACACCT--CGCATTACCGA---ATTCGATAAACAATAACCTAAGATTAAACCAATGAAATCCTTTGC---AACAAAAC----TAA-ATAAACGGTCCCT--------A-AT---------------G--AAATG-----TTA---TACATTTTAAAATACAAATG---GAT-TTTT----TAC-AATGC-----AAATACA----AG----A-----TTA-TAGA--T--TA-----------------AA-ATT---AA----AT--ATTACACATCAC------------AA-------ATG------A-----------------A---A---AAA---GAAG--G---------T-AT--A-AAA---TA-CAAATGAAAAC-----AT---A------------CA--------TATATA-ATAAAAA----AAA-A-T-ATACAATGCatctgccact
gi|20 : TATAGGTCTTATATATTTT-GTCATAACTCAG-AATCTC---TGACT---------------------CCCAC-CAGGAATTCACCC-TTGATC---CACCAGAGGTCT-CAAGAC-TTCTC-CGA-GTCA-CTCATCCGTTTACTG------C-TCCCC----TCaaatggaaa
gi|21 : A-TAGA--A---A-AGA--T----------AA-A-A---AG----AGGAATTATACAATAC------------AG-------ATGGAAAATA------------TAC--A---CTACAGATG-GAAA--A---------T-ATACA-AC-----A-CAAATGAAAAT--------------------------T------CATGCAGAT-CAAATtctcccccgttc
gi|21 : AGATAAAAAG-----AG---G------------AA-T------TATACA-ATACAGATG-GAAA-A-T-ATACACTACattgcaacgtttaatatgtc
gi|21 : atagaaaA-------ATT------A------------TAC--A---ATACAGATG-GAAA--A---------T-AT--ACAC----TA-CAGATGGAAA------A---------------------------TATACA-ACACAAATG-AAAA-agatggaaaatatacaacacaaatgaaaattcatgcagatcaaatattgcaacgtttaatatgtc
gi|22 : atagaaaagataaaaagaggAAT-----AT---G------------AA-TGTTGTTTTTATA-ATACAAATG-GACA-ATT-ATACAATACttcatgcagatcaaatattgcaacgtttaatatgtc
gi|22 : gc------------TAT--A---ATACAAATG-GACA--A---------TTAT--A-CAA---TA-CGAATGAAAGA-----A-----------------AA-A------TATATA-ATACAAATG-GAAA-A-G-ATgaatgaaagaaaaatatataatacaaatggaaaagatcagatattgcaacgtttggcatgccata
gi|23 : gcaatatgaatgttgttttC----ACAAT----TATGATTCATTTCTCATTGAAGTA----TGC-CA-AAAAAGCATTCAAATATAAGTATACGTCTTAG----TTT-TTCCTACCTCAGTAGCATCAGGGG-CTT-------C--------GAACCCcagatattgcaacgtttggcatgccata
gi|24 : TGGCGGATTCGAC-C-TCGACGCGCCCCATCCCCTTC----ACAA----ATATGATCTATTTGTTATAG--ATT----TTCTCA-AAACACGAT------ACAAATATACGCTTTAT----TTT-GT
gi|25 : cagTGAACAAATGAAATCCTTCAT---AACAAATC----AAA-ATAAACAATCCCTAAGATAC-A-AT-ACC--AGT---G--G--AAA-------TTA---TGCA-------ATACAAATGAAAA---GTTA----CAC-AACAC-----A-----A----A
gi|26 : ------A------------TAC--A---ATACAAATG-GAAATCA---------T-GC--A-A-----TA-AAAATGAAA--------T---G---------------T------TACACA-TTACAAATA-GAAA-A-T-ATAGAATACt
gi|3 : agGA-AA------ATT-CATAGATTTA-------T-TCTT--TCTAGGGAGAAC----TTCATGCTATTGCAATG--AGCAA-------ATACGGTGCATGTACTTTCCTGAGAGA-CGT-TGCTCAGGAA------------------------AACC-AT-CCTTAACACCTCTCGCAT----G-------CG-T-A-C-A-AATTTAAAATTAAAGTAATGAAATCCTTTGT---AACAAACC----AAA-ATAAACAATCCCT------CGG-AT-ACACTAAAAATG--A--AAAA------TTG---TACA-------ACATAAATT---G---TTTTTCAGTAC-AATA------A-----A----AG----A-----TTA-TACA--A--TACAGA--TAAAAGATTACAA-ATA---AA----AG--ATTATACAACGCAGATGAA-----AA-------ATT------A------------TGC--AATTATACAAATG-AAAG--A---------T-AC--G-AAA---TA-TAAATGAATGT-----AT---AGAAAAGGAAATTAA-T------TATACA-TTTCAAATG-AAAA-A-TGATGCAAaaatggaa
gi|4 : tgatacgaggttgacgagaaagtttA-------A-------TATTTT--G--TAAGGAAAT----GTAACGCCATTGCA------G-AA-------GTGTGGTGCATGTAC----ATGGG----CGT-GGCTTCTGAACTTGACCT-------CGT---TTGAACT-AT-CCTGAACACCTCACGTTTAACCAA---ATTTGATGAACAATAACTTAACATTAAACCAATGAAATCCTTTGT---AACAAACC---------TAAACAATCTCT------C-AGAT-ACA--AT----G--T--AAATGAAAAATTA---TAAAT-------TACAAATG---AT--TTTT----TAC-AATTT-----A-----A----AT----AAAACCCTA-TAGA--A--TACAAA--T----------A----A---AA----AT---TTATACAAAACAAAAAAAAAAAAAA-------ATT------A------------CAC--A---ATACAAATA-TAAA--A---------T-atatcgaacaattatacaatatacaatacgaataaagaattcc
gi|5 : tatACGAATGAAATCCTTCATCATAACAAATC----AAA-ATAAACAATCACT------C-----------------G--G--ATAC------TTG---TA---------ATACAAATG---AAAGATTT----TGC-AATAC-----A-----AATGGAA----A-----TCA-T-GC--ATTTACAAA--T----------GA-ACATTTAC----AT--AATATACATAAA------------AA-------AT-------A------------TAG--A---ATACAAATG-GAAA--AGTGTACAATT-AT--ATGCG---TAGAAAATGTACATTACACATTCAA------------AG-T------TATACA-GTTCAAATG-GAAA-C-T-ATAGAAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgggaaacattcaactcaatcaatcgatcaaatgggaaatattcaatatgaaggaaaaaaattaca
gi|5 : agctagtgatgtctcaataagagttaaaatctcgcgaagagaggtcgttgA----G--A--AAAT------GTACATTACAC------ATTCAAA-G--------TTA----TAC-AGTTC-----A-----A----ATGGAAA-----CTA-TAGA--A------AA--C----------AC-ATC---GA----AA--ATTATACAATAC------------AA-------ATG------AAATGAAAAATTATAC--A---ACATGAATA-GAAA--A---------T-AT--A-CAG---TG-CAAATGGA-------------G------------AA-T------TATAGA-ATAGAAAAG-GAAA-A-T-acatcgaaaattatacaatacaaatgaaatgaaaaattatacaacatgaatagaaaatatacagtgcaaatggagaattatagaatagaaaaggaaaatttcaaataaattgcaatgtttgacatgcca
gi|6 : agctagtgatgtctcaataagagttaaaatctcgcgaagagaggtcgttgacgaatgaaatccttcatcataacaaatcaaaataaacaatcactcggatacttgtaatacaaatgaaagattttgcaatacaaatggaaatcatgcatttacaaatgaacatttacataatatacataaaaaatatagaatacaaatggaaaagtgtacaattatatgcgtAACCCTTTGT---ATCAAACC----AAA-ATATACAATCTCTCGTGTAC-A-AT-ACC--AA----T--GCAAAAG------TTT---TACA-------ATGCAAATG---ACT-CTTT----TAC-AGTACAAATTA-----A----AT----A-----TCA-TAGATTA--AACAAAAGT----------AATGGA---AA----AA--AATACGCAATAT------------AA-------ACT-------------------TAA--G---ATTTACATGTGAAA--A---------T-AT--A-CAA---TT-CAAATGAAA-------------------------AG-T------TATGCA-ACACAAATGAGAAATA-T-ATACAATACttcaaataaattgcaatgtttgacatgcca
gi|6 : ------C-A-AT-ATA--AA----CTTA--AGAT------TTA-----CAT------GTGAAAATA---------------TAC-AATTC-----A-----A----AT----GAAAAGTTA-TGCA--A--CACAAA--T----------GA-G-----AA----AT--AT-ATACAATACTATTTG------AA-------GAT------A------------TA---A---ATACAAGTG--AAA--A---------T-AT--A-AAA---TA-CATATTAAAA------------------------AA-T------TATACA-TTACAAATG-GAAA-A-T-ACACATTACtatttgaagatataaatacaagtgaaaatataaaatacatattaaaaaattatacattacaaatggaaaatacacattacaaatggaaaaaaaattatacagtgtgaattctttttaataaatacggaaaagatcaaatattgcaacgttaggca
gi|7 : aaccctttgtatcaaaccaaaatatacaatctctcgtgtacaataccaatgcaaaagttttacaatgcaaatgactcttttacagtacaaattaaatatcatagattaaacaaaagtaatggaaaaaaatacgTGTATTC--AGCAA-------ATACGG---A---ACTTTCCTGCTAAG-TAT-GGCTCTTTCACTAGACCC-------CGT---GTAAACC-AT-CTGAAACACGTTACGT------------------------TAACTTGATATCAAACCAATAAAATCCTTTGT---AACGAACC----AAA-------------T------C-G-AT------------G--A--AAAA------TTA---CACA-------ATACAAATG---ATC-TCTT----CAC-AATGT----------------AT----G-----TCATTAGA--A--TGCAAA--T-------------AT-----A----AC--ACTATGTAACAC------------AA-------ATG------------------------A---ATCC---CG-G---------------T-AC--A---G---TA-TAAATGATAATG----AA---G------------AA-T------TACACA-ATACAACTG-AAAA-T-T-ATGCAATACaaatggaaaaaaaattatacagtgtgaattctttttaataaatacggaaaagatcaaatattgcaacgttaggca
gi|8 : CGTTTTAT----TTTTGTCCGNNNNNNNNNNNNNNNNNNNNNNN-------N--------NNNNNNNNN-NNNNNNNNNNNNN-NNNNNN---NNNNNNNNNNNN-NNNNNN-NNNNNNNNA-AT-A-T-CAA----TTACTG------CGTTCTC----CCGTTC-A-A----T-------------T----TGTTT----------TTGCAGATAGATAGATCACTCGTTAAACACAAGGTTAAGGTTAAAT-GTCGCTACCCGAAATAGACGCATAAAAGTGA-AATGTTTTCTT-C--------A-------T-TTTT--G--AGAGGGCACTTAATTCATGCCACAGCATTT--AGCAG-------ATACGGT---T---CTTTCCTGCAAAA-CTTAGATTCCCGAACTTTACCgattgggaataatcaaatattacaacgcttaacac
gi|9 : CAATAGAATCCTTCAT---AATAAATG----AAA-ATGAACA-CCCCT------C-GGAT-GCAT-AA----------AAAT------TGA------------------AAAT----------TT----TAT-AATTC-----A-----A----ATGCAAA-----TCA-GACA--A--TACAAA--T----------AA-A-A---GATTTTAG--ACTATAGAAAAC------------AATTGGAAAATT------A------------TAT--A---ATACAATTG-GAAA--A---------T-------ACGCATTA-CAACTGGA-------------------------------------ATACA-ACACAAATG-GAAA-A-T-
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAAAGGTTTATAATACAATTAAAAGATTATACAACTTAAAGAAGAAAAAATATTATTTACAAATGGAAAATAACAATGTACAATACTATGATACAATTCAGTTGAAAAATCATACTATAGCAAAATAGAAAATATACCAATTACAATTTTCAAAAGAAGTGTACAATATGTTTTTTTTTTTAGCAATACAATTGTAAAAGATCAAATATTGCTACGTTTGACATGTCA
Unaligned ( gi|27 ): AATAGAAATGCAAAATTATACATTATAGATGAAACATTTTACAATACAAATAAAAATATCAAATATTGCAACGTTTGA
Unaligned ( gi|28 ): ATACGATTGAAAATACATTACAAATGGGAAAAGATAAATTTTGCGACGATAGGCATGCCAT
Unaligned ( gi|29 ): TCAGTAGAAATACAAATAAATTTATACATCAATACATCATTATCAAAGAAAGGACT
Unaligned ( gi|30 ): TTCAACATGAGGCTGATCAGCGAGGAGAGAAATTTAATTTTCCCAAGGGGA
Unaligned ( gi|31 ): AAATCATTTTTTAAAAATTCAAATATTGCAACGTTGCAT
Alignments
lowQualScore : 111 1 111 2222222 3333 1 111111111111 222222 1111 1111 33333333333333333333 111 55555555555555 22222222 1111 111 666666666666666666 2222222222 11 1 333333333333 22222 1 11 444444444444444444444444444444444444444444444444444 1111 11111 1111111 1111111 88888888888888888888888 5555555555555555555555555555555555555555555555555555555555555555555555555555 3333333333333333333333333333 3333333333333333333333 44444444444444444444444444444444444444444 111111111 2222222222 5555555555555555555555555555555555
lowQualScore : 0 2 999 0 777 1 3333333 1111 0 1 3 0 999999999999 333333 6666 2 0 0000 5 0 0 1 99999999999999999999 4 66 11 5 777 111 1 8 6 0 88 11111111111111 66 1 11111111 4444 888 0 999999999999999999 8888888888 88 1 5 444444444444 1 1 1 55555 3 11 444444444444444444444444444444444444444444444444444 3 2222 00000 3333333 3 3 5 2 6666 4 0 2 4444444 8888 4 4 1 0 11 2 11111111111111111111111 1 1 555 7777 3 0 0000000000000000000000000000000000000000000000000000000000000000000000000000 7777 1 1111111111111111111111111111 3 44 555 1 4444444444444444444444 7777 555 0 11111111111111111111111111111111111111111 555 444 2 55 000000000 2 33 8888888888 2 9999999999999999999999999999999999 2 33 33 2 2 7 2
lowQualScore : . . ... . ... . ....... .... . . . . ............ ...... .... . . .... . . . . .................... . .. .. . ... ... . . . . .. .............. .. . ........ .... ... . .................. .......... .. . . ............ . . . ..... . .. ................................................... . .... ..... ....... . . . . .... . . . ....... .... . . . . .. . ....................... . . ... .... . . ............................................................................ .... . ............................ . .. ... . ...................... .... ... . ......................................... ... ... . .. ......... . .. .......... . .................................. . .. .. . . . .
lowQualScore : 2 5 000 0 555 0 0000000 6666 6 0 8 8 888888888888 000000 2222 5 1 6666 0 2 6 6 99999999999999999999 6 88 77 5 222 777 0 5 7 8 00 00000000000000 22 0 22222222 2222 000 8 222222222222222222 3333333333 00 0 0 000000000000 0 0 0 22222 3 00 444444444444444444444444444444444444444444444444444 0 1111 88888 0000000 9 4 8 5 7777 0 7 2 4444444 9999 4 4 0 9 00 2 44444444444444444444444 0 1 888 1111 3 2 2222222222222222222222222222222222222222222222222222222222222222222222222222 1111 0 2222222222222222222222222222 3 22 999 5 8888888888888888888888 1111 666 8 88888888888888888888888888888888888888888 888 444 5 99 000000000 5 77 8888888888 7 9999999999999999999999999999999999 2 11 11 4 4 5 5
consensus : TGGCGGATCCGGCGC-CCGG-GCGC---ANCCCCGTC----ACAAT--CATATGATCTATTTNTTATAGAAATG----TTC-CA-AAAAAGCAT------GTACGTATACGTTTTAT----TTT-GTCAGAACTCAGTAGTTTCAGGGGACTT-------T--------GGGCCCCAC-CAAGGNTTCGCCC-TNGATT---CACNAGAAGTCT-CAAGAC-GGCTCTCGA-AT-A-C-CAGCCGTTTACTG------CGTCCTC----CCGTTC-A-AAATTT-------------TCA-CTGGTTAAACACAACGTTGCAGNTAGATAGATCACTCGTTAAANANAAGNCTAAG-TTAAAT-GTCGCTATTCGCAATAGGCGCATAAAAGC--GA-AA------ATT-CA-------A-------T-TTTT------------G--AGGGGGAAC----TTCACGCCATTGCATTT--AGCAA-------ATACGGTGCATGTACTTTCCTGCGAAA-CGT-GGCTCCTGAACTTGACCT-------CGT---GTAAACC-AT-CNTGAACACCTCGCGCATTACCGA---ATTCGAT--AC-ATAACTTAANATTAAACCAATGAAATCCTTCGT---AACAAACC----AAA-ATAAACAATCCCT-C-G------AT-ACA--A-A-----GNAAA--T------TTA-----TACAT------ATACAAATG---A---TTTT----TACAATNC-----A-----A----AN----A-----TTA-TAGA--A--TACAAA--T----------AA-ATA---AA----AN--ATTATACAACAC------------AA-------AT------------TA----TAC--A---ATACAAATG-GAAA--A---------T-AT--A----ACG---TA-CAAATGAAAAT-----AT---G------------AA------TTATACA-ATA--CAAA--TG-GAAA-A-T-ATACAATAC
Reference ( family-2042 ) : TGGCGGATCCGGCGC-CCGG-GCGC---ANCCCCGTC----ACAAT--CATATGATCTATTTNTTATAGAAATG----TTC-CA-AAAAAGCAT------GTACGTATACGTTTTAT----TTT-GTCAGAACTCAGTAGTTTCAGGGGACTT-------T--------GGGCCCCAC-CAAGGNTTCGCCC-TNGATT---CACNAGAAGTCT-CAAGAC-GGCTCTCGA-AT-A-C-CAGCCGTTTACTG------CGTCCTC----CCGTTC-A-AAATTT-------------TCA-CTGGTTAAACACAACGTTGCAGNTAGATAGATCACTCGTTAAANANAAGNCTAAG-TTAAAT-GTCGCTATTCGCAATAGGCGCATAAAAGC--GA-AA------ATT-CA-------A-------T-TTTT------------G--AGGGGGAAC----TTCACGCCATTGCATTT--AGCAA-------ATACGGTGCATGTACTTTCCTGCGAAA-CGT-GGCTCCTGAACTTGACCT-------CGT---GTAAACC-AT-CNTGAACACCTCGCGCATTACCGA---ATTCGAT--AC-ATAACTTAANATTAAACCAATGAAATCCTTCGT---AACAAACC----AAA-ATAAACAATCCCT-C-G------AT-ACA--A-A-----GNAAA--T------TTA-----TACAT------ATACAAATG---A---TTTT----TACAATNC-----A-----A----AN----A-----TTA-TAGA--A--TACAAA--T----------AA-ATA---AA----AN--ATTATACAACAC------------AA-------AT------------TA----TAC--A---ATACAAATG-GAAA--A---------T-AT--A----ACG---TA-CAAATGAAAAT-----AT---G------------AA------TTATACA-ATA--CAAA--TG-GAAA-A-T-ATACAATAC
gi|1 : TGGCGGATCCAGCGCGCCGG-GCAC---AACCCCATCCCTCACAA----ATATGATTT-TTTTTTATACAAATACAGTTTC-CACAAAAAGCAC------GTACGT-TACGTTTTAT----TTT-GTCAGAATTCGGTAGTATCAGGGGACTT-------T--------GGACCCCAC-CAAGGCGTTGTCC-AATACT---CACAAGAAGTCT-CAAGAC-AGCTCTCAA-AT-ATT-CAGCCGTTTACTG------CATACTC----CCGTTC-A-AAATTT-------------TCATTTGGTTAA
gi|1 : AAG-TTTGATTGTCGCTATTCGCAAAAGGCACATAAAA-T--GATAA------ATT-CA-------A-------T-TGTT------------G--AGGAGGAAC----TTTACGCCATTGCATAT--AGCAA-------ATACGGCACAAGTATTTCCCTGAGAAA-CGT-GGCTCCTGAACCTGACCT-------CTT---GTAAGCC-AT-CGTAAACACCGCGCGCATTACCAA---ATT------------ACTCAAGATGAAACCAAGAAAATCCTTCGT---AACAAATC----AAA-ATAAACAAACC---C-A------AT-ACA--A-A-----GGGAA--T------TTA-----TACAT------ACATATATG---A---TTTT----TATAATAC-----A-----A----AG----A-----TTA-GAGA--A--TACAAA--T----------AA-ATA---AA----AG--ATTATACAACTC------------AA-------GT------------AA----TGC--A---ATACAAATG-GAAG--A---------T-GT--G----ACG---TG-CAAATGAAAAT-----AT---G------------AAT-----TTATACA-ATA--CAAG--TA-GAAA-A-T-ATACAATACtaagcgacggaaagtttgattgtcgctattcgcaaaaggcacataaaatgataaattcaattgttgaggaggaactttacgccattgcatatagcaaatacggcacaagtatttccctgagaaacgtggctcctgaacctgacctcttgtaagccatcgtaaacaccgcgcgcattaccaaattactcaagatgaaaccaagaaaatccttcgtaacaaatcaaaataaacaaacccaatacaaagggaatttatacatacatatatgatttttataatacaaagattagagaatacaaataaataaaagattatacaactcaagtaatgcaatacaaatggaagatgtgacgtgcaaatgaaaatatgaatttatacaatacaagtagaaaatatacaatacc
gi|10 : tggcggatccagcgcgccgggcacaaccccatccctcacaaatatgatttttttttatacaaatacagtttccacaaaaagcacgtacgttacgttttattttgtcagaattcggtagtatcaggggactttggaccccaccaaggcgttgtccaatactcacaagaagtctcaagacagctctcaaatattcagccgtttactgcatactcccgttcaaaattttcatttggttaataagcgacggaA-------A-------T-TTTTTC----------G--AGAGG-AAC----TCCACGTCATTGCATTT--AGCAACGTATAAATACGGTACGTGTACTTTCCTGCGA---------------AACTTGACCT-------CGT---TCAAACC-GCGCATT-AC-CCGGGCGCATTACCAACTGATCCGAT--------------GATTAACCCAATGCAGTCCTTTGT---AACAAATCTCTTAGATATGTACAAACACA-A-A------ATAAGA--A-A-----ATAAA--T--------------TACAT-------TTCA------------CTC----TACAAATA-----A-----A----AG----A-----CTA-TAGA--T--TAGAAA--A----------TA-ATA---Ac
gi|11 : tGCTGATCCGGCGC-C-GG-GCGC---ATCCCC-TC----ATGAT--CACAT--TCT-TTTTTTAAAGAAATG----T-C-CA-ATAAAGCAT------GTACG-----GTTTG------TGT-GTCAGAACTCAGTAGTTTCAGGGGATTT-------c
gi|13 : ccGGCGGATCCTGCGC-C-AG-GCGC---AACCCCG-C----ACAATTACATCTGATCTATTGGT-ATAGAAATG----TCC----AAAAGGCAT------GTA----TA-GTTC-AT----TTT-GTCAGAACTAAGTAGATTCAGAGGACCTCGCCCACT--------GGGTCTCAC-CAAGGTTTTGCCC-TAGATT---CACTTAAGGTCT-CAAGACAGGCCCT------------AGTCGTTTTCTAAACCCCCCCTCTC----CCGTTC-ACAAATCT-------------ctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctgttcaaaattttctagatccgccgctgaaagta
gi|14 : ACGATATTGCA------G-AA-------GTGTGGTGCATGTAC----ATGGG----CGT-GACTTCTGAACTTGATCT-------CGT---TTTCATCTAT-TCTGAACACCTCGCGCTTAACCGA---ATTCGATGAACGATAACTTAATATTAAACCAATGAAATCCATTGT---AACAAACC----AAA-ATAAACAATCTCT-CGG------AT-ACA--A-T-----GTAAA--TGAAAAATTA-----TACAT-------TACAAATG---A---TTctagatcaac
gi|15 : tA------TTATACA-ACT--CATA--TG-GAAA-A-T-GTAGAATAC
gi|15 : -------AT------------TA----TAC--A---ACTCATATG-GAAA--A---------T-GT--AGAATACA---TA-C--ATGTATAT-----AT---GGAA---------AA------TTACACA-ATAATTATACTTG-AAAA-AGT-ATACAGTAatacatgtatatatggaaaattacacaataattatacttgaaaaagtatacagtataaatgaatataaacaatataaatggaaaattaaatacaatatgactggaaatatacaaataaaaatgcttacaaggaaaattctgaatattgcaacgtccgacatgccat
gi|16 : ATAGGCGCATTAAAGC--GA-TT------ATT-TT-------T-------T-TTTTTTTTTTTTTTTTG--GTGGGGAAC----ATTACGACATTGCATTTTTAGCAA-------AATCAGTACA---A---------GAAA-CGT-GGTTCCTGAAGTTGACCT-------CGT---GTAAAGC-AA-TTTGGACACCTCGCACATTACCAT---ATTCTAT--A----AACGAGAACTGAAACCAATAACATCCTTTGtaaatgaatataaacaatataaatggaaaattaaatacaatatgactggaaatatacaaataaaaatgcttacaaggaaaattctgaatattgcaacgtccgacatgccat
gi|17 : ttgaatAGA--A--TACAAA--TGGAAGTTTG-AA-ATA---GA----AA--AT-ATACAACAC------------AA-------TT------------TAGAAATATTAA---ATACAAATG-TAAAT-A---------T-AG--A----A-G---TA-CAAATGAAAA------AT---T------------A-------TTGT-CA-ATA--CAAA--AG-GAAA-ATT-ATACAAT
gi|18 : tcaaaggggcattatataggGCAA-------ATACGGTGCATGTACTTTCCAGCGAAA-CGT-GGGTCC-GAACTTGACCT-------CATGTAGTAAACC-AT-CGTGAACACCTCACACAT------------------------ATTTAGAAATAAACCAATGAAATCCTTTGT---AACAGGCC----AAA-ATAAACAATCCCT-C-A------AT-ATA-----------TATA--T------ATA-----TATAT------ATAtcaaacaagaataaattactattcaacgtttgacatgctat
gi|19 : gATACGTCTTAT----TTT-GTCAGAACTCAGCTGTTGCAGGAGG-------------------GGG--------AGGGGGTCACCCACTGGTTCTCCACCAGGA-TCTGCTGG---GGCT-TCAAGAC-ACC-CAGCCATTTACTG------TCTCCCCCTTTCCATTCGG-AAATTT-----------------CTGGt
gi|2 : caaaaataCAGTAGTTTCTGGGGAGTT-------TACCCCCTAGGGCCCCAAACAAAGATT-ACCA-TGGATT---CACAAGGA-TTT-CAAGAC-AGC-CT----AT-G----------TTACTG------CGTC-TC----CCATTC-AGAAATTTGTAGATAGTTTGGTCA-CTGGTTAAACACAACGTTG--ATTA-ATAG------CG----AGAGAAATC-----TTAAAT-GTCGCTTTTTGCAATGGGCGCATAAAAGC--AA-AA------ATTACA-------AGGTTTATT-TTTT------------T--A-GGGGAAT----TTCACGCAGTTTCATTT--ACCAA-------ATACGGTACATGTACATTCCCGCGAAATCGT-GGATCCTGAACTTGACCCTGCACAATGT---GTAAACC-AA-TTAAAACACCT--CGCATTACCGA---ATTCGATAAACAATAACCTAAGATTAAACCAATGAAATCCTTTGC---AACAAAAC----TAA-ATAAACGGTCCCT------------------A-A-----TGAAA--TG-----TTA-----TACATTTTAAAATACAAATG---GAT-TTTT----TACAATGC-----AAATACA----AG----A-----TTA-TAGA--T--TA-----------------AA-ATT---AA----AT--ATTACACATCAC------------AA-------AT------------GA---------A---A---AAA---GAAG--G---------T-AT--A----AAA---TA-CAAATGAAAAC-----AT---A------------CA-------TATATA-ATA--AAAA------AAA-A-T-ATACAATGCatctgccact
gi|20 : TATAGGTCTTATATATTTT-GTCATAACTCAG-AATCTC---TGACT---------------------CCCAC-CAGGAATTCACCC-TTGATC---CACCAGAGGTCT-CAAGAC-TTCTC-CGA-GTCA-CTCATCCGTTTACTG------C-TCCCC----TCaaatggaaa
gi|21 : A-TAGA--A---A-AGA--T----------AA-A-A---AG----AGGAATTATACAATAC------------AG-------ATGGAAAA------TA----TAC--A---CTACAGATG-GAAA--A---------T-ATACA----AC-----A-CAAATGAAAAT-------------------------------TCATGCAGAT---CAAA--Ttctcccccgttc
gi|21 : AGATAAAAAG-----AG---G------------AA------TTATACA-ATA--CAGA--TG-GAAA-A-T-ATACACTACattgcaacgtttaatatgtc
gi|21 : atagaaaA-------AT------------TA----TAC--A---ATACAGATG-GAAA--A---------T-AT--AC---AC----TA-CAGATGGAAA------A--------------------------TATACA-ACA--CAAA--TG-AAAA-agatggaaaatatacaacacaaatgaaaattcatgcagatcaaatattgcaacgtttaatatgtc
gi|22 : atagaaaagataaaaagaggAAT-----AT---G------------AATGTTGTTTTTATA-ATA--CAAA--TG-GACA-ATT-ATACAATACttcatgcagatcaaatattgcaacgtttaatatgtc
gi|22 : gcT------------TT----TAT--A---ATACAAATG-GACA--A---------TTAT--A----CAA---TA-CGAATGAAAGA-----A-----------------AA------ATATATA-ATA--CAAA--TG-GAAA-A-G-ATgaatgaaagaaaaatatataatacaaatggaaaagatcagatattgcaacgtttggcatgccata
gi|23 : gcaatatgaatgttgtC----ACAAT----TATGATTCATTTCTCATTGAAGTA----TGC-CA-AAAAAGCATTCAAATATAAGTATACGTCTTAG----TTT-TTCCTACCTCAGTAGCATCAGGGG-CTT-------C--------GAACCCcagatattgcaacgtttggcatgccata
gi|24 : TGGCGGATTCGAC-C-TCGACGCGCCCCATCCCCTTC----ACAA----ATATGATCTATTTGTTATAG--ATT----TTCTCA-AAACACGAT------ACAAATATACGCTTTAT----TTT-GT
gi|25 : cagTGAACAAATGAAATCCTTCAT---AACAAATC----AAA-ATAAACAATCCCTAA-G------AT-ACA--ATACCAGTGGAAA---------TTA-----TGCA-------ATACAAATGAAAA---GTTA----CACAACAC-----A-----A----A
gi|26 : A----TAC--A---ATACAAATG-GAAATCA---------T-GC--A----A-----TA-AAAATGAAA--------T---G--------------------TTACACA-TTA--CAAA--TA-GAAA-A-T-ATAGAATACt
gi|3 : agAAAGTTTGA-AA------ATT-CATAGATTTA-------T-TCTT------------TCTAGGGAGAAC----TTCATGCTATTGCAATG--AGCAA-------ATACGGTGCATGTACTTTCCTGAGAGA-CGT-TGCTCAGGAA------------------------AACC-AT-CCTTAACACCTCTCGCAT----G-------CG-T--AC-A-AATTTAAAATTAAAGTAATGAAATCCTTTGT---AACAAACC----AAA-ATAAACAATCCCT-CGG------AT-ACACTA-AAAAT-GAAAA--A------TTG-----TACA-------ACATAAATT---G---TTTTTCAGTACAATA------A-----A----AG----A-----TTA-TACA--A--TACAGA--TAAAAGATTACAA-ATA---AA----AG--ATTATACAACGCAGATGAA-----AA-------AT------------TA----TGC--AATTATACAAATG-AAAG--A---------T-AC--G----AAA---TA-TAAATGAATGT-----AT---AGAAAAGGAAATTAA------TTATACA-TTT--CAAA--TG-AAAA-A-TGATGCAAaaatggaa
gi|4 : tgatacgaggttgacgagA-------A-------TATTTT------------G--TAAGGAAAT----GTAACGCCATTGCA------G-AA-------GTGTGGTGCATGTAC----ATGGG----CGT-GGCTTCTGAACTTGACCT-------CGT---TTGAACT-AT-CCTGAACACCTCACGTTTAACCAA---ATTTGATGAACAATAACTTAACATTAAACCAATGAAATCCTTTGT---AACAAACC---------TAAACAATCTCT-CAG------AT-ACA--A-T-----GTAAA--TGAAAAATTA-----TAAAT-------TACAAATG---AT--TTTT----TACAATTT-----A-----A----AT----AAAACCCTA-TAGA--A--TACAAA--T----------A----A---AA----AT---TTATACAAAACAAAAAAAAAAAAAA-------AT------------TA----CAC--A---ATACAAATA-TAAA--A---------T-atatcgaacaattatacaatatacaatacgaataaagaattcc
gi|5 : tatACGAATGAAATCCTTCATCATAACAAATC----AAA-ATAAACAATCACT-CGG------AT-AC-------------------------TTG-----TA---------ATACAAATG---AAAGATTT----TGCAATAC-----A-----AATGGAA----A-----TCA-T-GC--ATTTACAAA--T----------GA-ACATTTAC----AT--AATATAC-ATAA------------AA-------AA------------TA----TAG--A---ATACAAATG-GAAA--AGTGTACAATT-AT--AT---GCG---TAGAAAATGTACATTACACATTCAA------------AG------TTATACA-GTT--CAAA--TG-GAAA-C-T-ATAGAAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgggaaacattcaactcaatcaatcgatcaaatgggaaatattcaatatgaaggaaaaaaattaca
gi|5 : agctagtgatgtctcaataagagttaaaatctcgcgaagagaggtcgttg-A-----GAAAA--T------GTACAT--TACAC------ATTCAAA-G--------TTA----TACAGTTC-----A-----A----ATGGAAA-----CTA-TAGA--A------AA--C----------AC-ATC---GA----AA--ATTATACAATAC------------AA-------ATGAAATGAAAAATTA----TAC--A---ACATGAATA-GAAA--A---------T-AT--A----CAG---TG-CAAATGGA-------------G------------AA------TTATAGA-ATA--GAAA--AG-GAAA-A-T-acatcgaaaattatacaatacaaatgaaatgaaaaattatacaacatgaatagaaaatatacagtgcaaatggagaattatagaatagaaaaggaaaatttcaaataaattgcaatgtttgacatgcca
gi|6 : agctagtgatgtctcaataagagttaaaatctcgcgaagagaggtcgttgacgaatgaaatccttcatcataacaaatcaaaataaacaatcactcggatacttgtaatacaaatgaaagattttgcaatacaaatggaaatcatgcatttacaaatgaacatttacataatatacataaaaaatatagaatacaaatggaaaagtgtacaattatatgcgtAACCCTTTGT---ATCAAACC----AAA-ATATACAATCTCT-C-GTGTACAAT-ACC--A-AT----GCAAAAGT------TT------TACA-------ATGCAAATG---ACT-CTTT----TACAGTACAAATTA-----A----AT----A-----TCA-TAGATTA--AACAAAAGT----------AATGGA---AA----AA--AATACGCAATAT------------AA-------AC------------T-----TAA--G---ATTTACATGTGAAA--A---------T-AT--A----CAA---TT-CAAATGAAA-------------------------AG------TTATGCA-ACA--CAAA--TGAGAAATA-T-ATACAATACttcaaataaattgcaatgtttgacatgcca
gi|6 : CA--A-T-----ATAAA--C------TTAAGATTTACAT------GTGAAAATA---------------TACAATTC-----A-----A----AT----GAAAAGTTA-TGCA--A--CACAAA--T----------GA-G-----AA----AT--AT-ATACAATACTATTTG------AA-------GA------------TA----TA---A---ATACAAGTG--AAA--A---------T-AT--A----AAA---TA-CATATTAAAA------------------------AA------TTATACA-TTA--CAAA--TG-GAAA-A-T-ACACATTACtatttgaagatataaatacaagtgaaaatataaaatacatattaaaaaattatacattacaaatggaaaatacacattacaaatggaaaaaaaattatacagtgtgaattctttttaataaatacggaaaagatcaaatattgcaacgttaggca
gi|7 : aaccctttgtatcaaaccaaaatatacaatctctcgtgtacaataccaatgcaaaagttttacaatgcaaatgactcttttacagtacaaattaaatatcatagattaaacaaaagtaatggaaaaaaatacgTGTATTC--AGCAA-------ATACGG---A---ACTTTCCTGCTAAG-TAT-GGCTCTTTCACTAGACCC-------CGT---GTAAACC-AT-CTGAAACACGTTACGT------------------------TAACTTGATATCAAACCAATAAAATCCTTTGT---AACGAACC----AAA-------------T-C-G------AT--------------GAAAA--A------TTA-----CACA-------ATACAAATG---ATC-TCTT----CACAATGT----------------AT----G-----TCATTAGA--A--TGCAAA--T-------------AT-----A----AC--ACTATGTAACAC------------AA-------AT--------------------G--A---ATCC---CG-G---------------T-AC--A------G---TA-TAAATGATAATG----AA---G------------AA------TTACACA-ATA--CAAC--TG-AAAA-T-T-ATGCAATACaaatggaaaaaaaattatacagtgtgaattctttttaataaatacggaaaagatcaaatattgcaacgttaggca
gi|8 : CGTTTTAT----TTTTGTCCGNNNNNNNNNNNNNNNNNNNNNNN-------N--------NNNNNNNNN-NNNNNNNNNNNNN-NNNNNN---NNNNNNNNNNNN-NNNNNN-NNNNNNNNA-AT-A-T-CAA----TTACTG------CGTTCTC----CCGTTC-A-A----T-------------T----TGTTT----------TTGCAGATAGATAGATCACTCGTTAAACACAAGGTTAAGGTTAAAT-GTCGCTACCCGAAATAGACGCATAAAAGT--GA-AATGTTTTCTT-C--------A-------T-TTTT------------G--AGAGGGCACTTAATTCATGCCACAGCATTT--AGCAG-------ATACGGT---T---CTTTCCTGCAAAA-CTTAGATTCCCGAACTTTACCgattgggaataatcaaatattacaacgcttaacac
gi|9 : CAATAGAATCCTTCAT---AATAAATG----AAA-ATGAACA-CCCCT-C-GG-----AT-GCA--T-A------AAAA--T------TGA--------------------AAAT----------TT----TATAATTC-----A-----A----ATGCAAA-----TCA-GACA--A--TACAAA--T----------AA-A-A---GATTTTAG--ACTATAGAAAAC------------AATTGGAAAAT------------TA----TAT--A---ATACAATTG-GAAA--A---------T----------ACGCATTA-CAACTGGA------------------------------------ATACA-ACA--CAAA--TG-GAAA-A-T-
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAAAGGTTTATAATACAATTAAAAGATTATACAACTTAAAGAAGAAAAAATATTATTTACAAATGGAAAATAACAATGTACAATACTATGATACAATTCAGTTGAAAAATCATACTATAGCAAAATAGAAAATATACCAATTACAATTTTCAAAAGAAGTGTACAATATGTTTTTTTTTTTAGCAATACAATTGTAAAAGATCAAATATTGCTACGTTTGACATGTCA
Unaligned ( gi|27 ): AATAGAAATGCAAAATTATACATTATAGATGAAACATTTTACAATACAAATAAAAATATCAAATATTGCAACGTTTGA
Unaligned ( gi|28 ): ATACGATTGAAAATACATTACAAATGGGAAAAGATAAATTTTGCGACGATAGGCATGCCAT
Unaligned ( gi|29 ): TCAGTAGAAATACAAATAAATTTATACATCAATACATCATTATCAAAGAAAGGACT
Unaligned ( gi|30 ): TTCAACATGAGGCTGATCAGCGAGGAGAGAAATTTAATTTTCCCAAGGGGA
Unaligned ( gi|31 ): AAATCATTTTTTAAAAATTCAAATATTGCAACGTTGCAT
Alignments
lowQualScore : 111 1 111 2222222 3333 1 111111111111 222222 1111 1111 33333333333333333333 111 55555555555555 22222222 1111 111 666666666666666666 2222222222 11 1 333333333333 22222 1 11 444444444444444444444444444444444444444444444444444 1111 11111 1111111 1111111 88888888888888888888888 5555555555555555555555555555555555555555555555555555555555555555555555555555 3333333333333333333333333333 3333333333333333333333 44444444444444444444444444444444444444444 111111111 2222222222 5555555555555555555555555555555555
lowQualScore : 0 2 999 0 777 1 3333333 1111 0 1 3 0 999999999999 333333 6666 2 0 0000 5 0 0 1 99999999999999999999 4 66 11 5 777 111 1 8 6 0 88 11111111111111 66 1 11111111 4444 888 0 999999999999999999 8888888888 88 1 5 444444444444 1 1 1 55555 3 11 444444444444444444444444444444444444444444444444444 3 2222 00000 3333333 3 3 5 2 6666 4 0 2 4444444 8888 4 4 1 0 11 2 11111111111111111111111 1 1 555 7777 3 0 0000000000000000000000000000000000000000000000000000000000000000000000000000 7777 1 1111111111111111111111111111 3 44 555 1 4444444444444444444444 7777 555 0 11111111111111111111111111111111111111111 555 444 2 55 000000000 2 33 8888888888 2 9999999999999999999999999999999999 2 33 33 2 2 7 2
lowQualScore : . . ... . ... . ....... .... . . . . ............ ...... .... . . .... . . . . .................... . .. .. . ... ... . . . . .. .............. .. . ........ .... ... . .................. .......... .. . . ............ . . . ..... . .. ................................................... . .... ..... ....... . . . . .... . . . ....... .... . . . . .. . ....................... . . ... .... . . ............................................................................ .... . ............................ . .. ... . ...................... .... ... . ......................................... ... ... . .. ......... . .. .......... . .................................. . .. .. . . . .
lowQualScore : 2 5 000 0 555 0 0000000 6666 6 0 8 8 888888888888 000000 2222 5 1 6666 0 2 6 6 99999999999999999999 6 88 77 5 222 777 0 5 7 8 00 00000000000000 22 0 22222222 2222 000 8 222222222222222222 3333333333 00 0 0 000000000000 0 0 0 22222 3 00 444444444444444444444444444444444444444444444444444 0 1111 88888 0000000 9 4 8 5 7777 0 7 2 4444444 9999 4 4 0 9 00 2 44444444444444444444444 0 1 888 1111 3 2 2222222222222222222222222222222222222222222222222222222222222222222222222222 1111 0 2222222222222222222222222222 3 22 999 5 8888888888888888888888 1111 666 8 88888888888888888888888888888888888888888 888 444 5 99 000000000 5 77 8888888888 7 9999999999999999999999999999999999 2 11 11 4 4 5 5
consensus : TGGCGGATCCGGCGC-CCGG-GCGC---ANCCCCGTC----ACAAT--CATATGATCTATTTNTTATAGAAATG----TTC-CA-AAAAAGCAT------GTACGTATACGTTTTAT----TTT-GTCAGAACTCAGTAGTTTCAGGGGACTT-------T--------GGGCCCCAC-CAAGGNTTCGCCC-TNGATT---CACNAGAAGTCT-CAAGAC-GGCTCTCGA-AT-A-C-CAGCCGTTTACTG------CGTCCTC----CCGTTC-A-AAATTT-------------TCA-CTGGTTAAACACAACGTTGCAGNTAGATAGATCACTCGTTAAANANAAGNCTAAG-TTAAAT-GTCGCTATTCGCAATAGGCGCATAAAAGC--GA-AA------ATT-CA-------A-------T-TTTT------------G--AGGGGGAAC----TTCACGCCATTGCATTT--AGCAA-------ATACGGTGCATGTACTTTCCTGCGAAA-CGT-GGCTCCTGAACTTGACCT-------CGT---GTAAACC-AT-CNTGAACACCTCGCGCATTACCGA---ATTCGAT--AC-ATAACTTAANATTAAACCAATGAAATCCTTCGT---AACAAACC----AAA-ATAAACAATCCCT-C-G------AT-ACA--A-A-----GNAAA--T------TTA-----TACAT------ATACAAATG---A---TTTT----TACAATNC-----A-----A----AN----A-----TTA-TAGA--A--TACAAA--T----------AA-ATA---AA----AN--ATTATACAACAC------------AA-------AT------------TA----TAC--A---ATACAAATG-GAAA--A---------T-AT--A----ACG---TA-CAAATGAAAAT-----AT---G------------AA------TTATACA-ATA--CAAA--TG-GAAA-A-T-ATACAATAC
Reference ( family-2042 ) : TGGCGGATCCGGCGC-CCGG-GCGC---ANCCCCGTC----ACAAT--CATATGATCTATTTNTTATAGAAATG----TTC-CA-AAAAAGCAT------GTACGTATACGTTTTAT----TTT-GTCAGAACTCAGTAGTTTCAGGGGACTT-------T--------GGGCCCCAC-CAAGGNTTCGCCC-TNGATT---CACNAGAAGTCT-CAAGAC-GGCTCTCGA-AT-A-C-CAGCCGTTTACTG------CGTCCTC----CCGTTC-A-AAATTT-------------TCA-CTGGTTAAACACAACGTTGCAGNTAGATAGATCACTCGTTAAANANAAGNCTAAG-TTAAAT-GTCGCTATTCGCAATAGGCGCATAAAAGC--GA-AA------ATT-CA-------A-------T-TTTT------------G--AGGGGGAAC----TTCACGCCATTGCATTT--AGCAA-------ATACGGTGCATGTACTTTCCTGCGAAA-CGT-GGCTCCTGAACTTGACCT-------CGT---GTAAACC-AT-CNTGAACACCTCGCGCATTACCGA---ATTCGAT--AC-ATAACTTAANATTAAACCAATGAAATCCTTCGT---AACAAACC----AAA-ATAAACAATCCCT-C-G------AT-ACA--A-A-----GNAAA--T------TTA-----TACAT------ATACAAATG---A---TTTT----TACAATNC-----A-----A----AN----A-----TTA-TAGA--A--TACAAA--T----------AA-ATA---AA----AN--ATTATACAACAC------------AA-------AT------------TA----TAC--A---ATACAAATG-GAAA--A---------T-AT--A----ACG---TA-CAAATGAAAAT-----AT---G------------AA------TTATACA-ATA--CAAA--TG-GAAA-A-T-ATACAATAC
gi|1 : TGGCGGATCCAGCGCGCCGG-GCAC---AACCCCATCCCTCACAA----ATATGATTT-TTTTTTATACAAATACAGTTTC-CACAAAAAGCAC------GTACGT-TACGTTTTAT----TTT-GTCAGAATTCGGTAGTATCAGGGGACTT-------T--------GGACCCCAC-CAAGGCGTTGTCC-AATACT---CACAAGAAGTCT-CAAGAC-AGCTCTCAA-AT-ATT-CAGCCGTTTACTG------CATACTC----CCGTTC-A-AAATTT-------------TCATTTGGTTAA
gi|1 : AAG-TTTGATTGTCGCTATTCGCAAAAGGCACATAAAA-T--GATAA------ATT-CA-------A-------T-TGTT------------G--AGGAGGAAC----TTTACGCCATTGCATAT--AGCAA-------ATACGGCACAAGTATTTCCCTGAGAAA-CGT-GGCTCCTGAACCTGACCT-------CTT---GTAAGCC-AT-CGTAAACACCGCGCGCATTACCAA---ATT------------ACTCAAGATGAAACCAAGAAAATCCTTCGT---AACAAATC----AAA-ATAAACAAACC---C-A------AT-ACA--A-A-----GGGAA--T------TTA-----TACAT------ACATATATG---A---TTTT----TATAATAC-----A-----A----AG----A-----TTA-GAGA--A--TACAAA--T----------AA-ATA---AA----AG--ATTATACAACTC------------AA-------GT------------AA----TGC--A---ATACAAATG-GAAG--A---------T-GT--G----ACG---TG-CAAATGAAAAT-----AT---G------------AAT-----TTATACA-ATA--CAAG--TA-GAAA-A-T-ATACAATACtaagcgacggaaagtttgattgtcgctattcgcaaaaggcacataaaatgataaattcaattgttgaggaggaactttacgccattgcatatagcaaatacggcacaagtatttccctgagaaacgtggctcctgaacctgacctcttgtaagccatcgtaaacaccgcgcgcattaccaaattactcaagatgaaaccaagaaaatccttcgtaacaaatcaaaataaacaaacccaatacaaagggaatttatacatacatatatgatttttataatacaaagattagagaatacaaataaataaaagattatacaactcaagtaatgcaatacaaatggaagatgtgacgtgcaaatgaaaatatgaatttatacaatacaagtagaaaatatacaatacc
gi|10 : tggcggatccagcgcgccgggcacaaccccatccctcacaaatatgatttttttttatacaaatacagtttccacaaaaagcacgtacgttacgttttattttgtcagaattcggtagtatcaggggactttggaccccaccaaggcgttgtccaatactcacaagaagtctcaagacagctctcaaatattcagccgtttactgcatactcccgttcaaaattttcatttggttaataagcgacggaA-------A-------T-TTTTTC----------G--AGAGG-AAC----TCCACGTCATTGCATTT--AGCAACGTATAAATACGGTACGTGTACTTTCCTGCGA---------------AACTTGACCT-------CGT---TCAAACC-GCGCATT-AC-CCGGGCGCATTACCAACTGATCCGAT--------------GATTAACCCAATGCAGTCCTTTGT---AACAAATCTCTTAGATATGTACAAACACA-A-A------ATAAGA--A-A-----ATAAA--T--------------TACAT-------TTCA------------CTC----TACAAATA-----A-----A----AG----A-----CTA-TAGA--T--TAGAAA--A----------TA-ATA---Ac
gi|11 : tGCTGATCCGGCGC-C-GG-GCGC---ATCCCC-TC----ATGAT--CACAT--TCT-TTTTTTAAAGAAATG----T-C-CA-ATAAAGCAT------GTACG-----GTTTG------TGT-GTCAGAACTCAGTAGTTTCAGGGGATTT-------c
gi|13 : ccGGCGGATCCTGCGC-C-AG-GCGC---AACCCCG-C----ACAATTACATCTGATCTATTGGT-ATAGAAATG----TCC----AAAAGGCAT------GTA----TA-GTTC-AT----TTT-GTCAGAACTAAGTAGATTCAGAGGACCTCGCCCACT--------GGGTCTCAC-CAAGGTTTTGCCC-TAGATT---CACTTAAGGTCT-CAAGACAGGCCCT------------AGTCGTTTTCTAAACCCCCCCTCTC----CCGTTC-ACAAATCT-------------ctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctgttcaaaattttctagatccgccgctgaaagta
gi|14 : ACGATATTGCA------G-AA-------GTGTGGTGCATGTAC----ATGGG----CGT-GACTTCTGAACTTGATCT-------CGT---TTTCATCTAT-TCTGAACACCTCGCGCTTAACCGA---ATTCGATGAACGATAACTTAATATTAAACCAATGAAATCCATTGT---AACAAACC----AAA-ATAAACAATCTCT-CGG------AT-ACA--A-T-----GTAAA--TGAAAAATTA-----TACAT-------TACAAATG---A---TTctagatcaac
gi|15 : tA------TTATACA-ACT--CATA--TG-GAAA-A-T-GTAGAATAC
gi|15 : -------AT------------TA----TAC--A---ACTCATATG-GAAA--A---------T-GT--AGAATACA---TA-C--ATGTATAT-----AT---GGAA---------AA------TTACACA-ATAATTATACTTG-AAAA-AGT-ATACAGTAatacatgtatatatggaaaattacacaataattatacttgaaaaagtatacagtataaatgaatataaacaatataaatggaaaattaaatacaatatgactggaaatatacaaataaaaatgcttacaaggaaaattctgaatattgcaacgtccgacatgccat
gi|16 : ATAGGCGCATTAAAGC--GA-TT------ATT-TT-------T-------T-TTTTTTTTTTTTTTTTG--GTGGGGAAC----ATTACGACATTGCATTTTTAGCAA-------AATCAGTACA---A---------GAAA-CGT-GGTTCCTGAAGTTGACCT-------CGT---GTAAAGC-AA-TTTGGACACCTCGCACATTACCAT---ATTCTAT--A----AACGAGAACTGAAACCAATAACATCCTTTGtaaatgaatataaacaatataaatggaaaattaaatacaatatgactggaaatatacaaataaaaatgcttacaaggaaaattctgaatattgcaacgtccgacatgccat
gi|17 : ttgaatAGA--A--TACAAA--TGGAAGTTTG-AA-ATA---GA----AA--AT-ATACAACAC------------AA-------TT------------TAGAAATATTAA---ATACAAATG-TAAAT-A---------T-AG--A----A-G---TA-CAAATGAAAA------AT---T------------A-------TTGT-CA-ATA--CAAA--AG-GAAA-ATT-ATACAAT
gi|18 : tcaaaggggcattatataggGCAA-------ATACGGTGCATGTACTTTCCAGCGAAA-CGT-GGGTCC-GAACTTGACCT-------CATGTAGTAAACC-AT-CGTGAACACCTCACACAT------------------------ATTTAGAAATAAACCAATGAAATCCTTTGT---AACAGGCC----AAA-ATAAACAATCCCT-C-A------AT-ATA-----------TATA--T------ATA-----TATAT------ATAtcaaacaagaataaattactattcaacgtttgacatgctat
gi|19 : gATACGTCTTAT----TTT-GTCAGAACTCAGCTGTTGCAGGAGG-------------------GGG--------AGGGGGTCACCCACTGGTTCTCCACCAGGA-TCTGCTGG---GGCT-TCAAGAC-ACC-CAGCCATTTACTG------TCTCCCCCTTTCCATTCGG-AAATTT-----------------CTGGt
gi|2 : caaaaataCAGTAGTTTCTGGGGAGTT-------TACCCCCTAGGGCCCCAAACAAAGATT-ACCA-TGGATT---CACAAGGA-TTT-CAAGAC-AGC-CT----AT-G----------TTACTG------CGTC-TC----CCATTC-AGAAATTTGTAGATAGTTTGGTCA-CTGGTTAAACACAACGTTG--ATTA-ATAG------CG----AGAGAAATC-----TTAAAT-GTCGCTTTTTGCAATGGGCGCATAAAAGC--AA-AA------ATTACA-------AGGTTTATT-TTTT------------T--A-GGGGAAT----TTCACGCAGTTTCATTT--ACCAA-------ATACGGTACATGTACATTCCCGCGAAATCGT-GGATCCTGAACTTGACCCTGCACAATGT---GTAAACC-AA-TTAAAACACCT--CGCATTACCGA---ATTCGATAAACAATAACCTAAGATTAAACCAATGAAATCCTTTGC---AACAAAAC----TAA-ATAAACGGTCCCT------------------A-A-----TGAAA--TG-----TTA-----TACATTTTAAAATACAAATG---GAT-TTTT----TACAATGC-----AAATACA----AG----A-----TTA-TAGA--T--TA-----------------AA-ATT---AA----AT--ATTACACATCAC------------AA-------AT------------GA---------A---A---AAA---GAAG--G---------T-AT--A----AAA---TA-CAAATGAAAAC-----AT---A------------CA-------TATATA-ATA--AAAA------AAA-A-T-ATACAATGCatctgccact
gi|20 : TATAGGTCTTATATATTTT-GTCATAACTCAG-AATCTC---TGACT---------------------CCCAC-CAGGAATTCACCC-TTGATC---CACCAGAGGTCT-CAAGAC-TTCTC-CGA-GTCA-CTCATCCGTTTACTG------C-TCCCC----TCaaatggaaa
gi|21 : A-TAGA--A---A-AGA--T----------AA-A-A---AG----AGGAATTATACAATAC------------AG-------ATGGAAAA------TA----TAC--A---CTACAGATG-GAAA--A---------T-ATACA----AC-----A-CAAATGAAAAT-------------------------------TCATGCAGAT---CAAA--Ttctcccccgttc
gi|21 : AGATAAAAAG-----AG---G------------AA------TTATACA-ATA--CAGA--TG-GAAA-A-T-ATACACTACattgcaacgtttaatatgtc
gi|21 : atagaaaA-------AT------------TA----TAC--A---ATACAGATG-GAAA--A---------T-AT--AC---AC----TA-CAGATGGAAA------A--------------------------TATACA-ACA--CAAA--TG-AAAA-agatggaaaatatacaacacaaatgaaaattcatgcagatcaaatattgcaacgtttaatatgtc
gi|22 : atagaaaagataaaaagaggAAT-----AT---G------------AATGTTGTTTTTATA-ATA--CAAA--TG-GACA-ATT-ATACAATACttcatgcagatcaaatattgcaacgtttaatatgtc
gi|22 : gcT------------TT----TAT--A---ATACAAATG-GACA--A---------TTAT--A----CAA---TA-CGAATGAAAGA-----A-----------------AA------ATATATA-ATA--CAAA--TG-GAAA-A-G-ATgaatgaaagaaaaatatataatacaaatggaaaagatcagatattgcaacgtttggcatgccata
gi|23 : gcaatatgaatgttgtC----ACAAT----TATGATTCATTTCTCATTGAAGTA----TGC-CA-AAAAAGCATTCAAATATAAGTATACGTCTTAG----TTT-TTCCTACCTCAGTAGCATCAGGGG-CTT-------C--------GAACCCcagatattgcaacgtttggcatgccata
gi|24 : TGGCGGATTCGAC-C-TCGACGCGCCCCATCCCCTTC----ACAA----ATATGATCTATTTGTTATAG--ATT----TTCTCA-AAACACGAT------ACAAATATACGCTTTAT----TTT-GT
gi|25 : cagTGAACAAATGAAATCCTTCAT---AACAAATC----AAA-ATAAACAATCCCTAA-G------AT-ACA--ATACCAGTGGAAA---------TTA-----TGCA-------ATACAAATGAAAA---GTTA----CACAACAC-----A-----A----A
gi|26 : A----TAC--A---ATACAAATG-GAAATCA---------T-GC--A----A-----TA-AAAATGAAA--------T---G--------------------TTACACA-TTA--CAAA--TA-GAAA-A-T-ATAGAATACt
gi|3 : agAAAGTTTGA-AA------ATT-CATAGATTTA-------T-TCTT------------TCTAGGGAGAAC----TTCATGCTATTGCAATG--AGCAA-------ATACGGTGCATGTACTTTCCTGAGAGA-CGT-TGCTCAGGAA------------------------AACC-AT-CCTTAACACCTCTCGCAT----G-------CG-T--AC-A-AATTTAAAATTAAAGTAATGAAATCCTTTGT---AACAAACC----AAA-ATAAACAATCCCT-CGG------AT-ACACTA-AAAAT-GAAAA--A------TTG-----TACA-------ACATAAATT---G---TTTTTCAGTACAATA------A-----A----AG----A-----TTA-TACA--A--TACAGA--TAAAAGATTACAA-ATA---AA----AG--ATTATACAACGCAGATGAA-----AA-------AT------------TA----TGC--AATTATACAAATG-AAAG--A---------T-AC--G----AAA---TA-TAAATGAATGT-----AT---AGAAAAGGAAATTAA------TTATACA-TTT--CAAA--TG-AAAA-A-TGATGCAAaaatggaa
gi|4 : tgatacgaggttgacgagA-------A-------TATTTT------------G--TAAGGAAAT----GTAACGCCATTGCA------G-AA-------GTGTGGTGCATGTAC----ATGGG----CGT-GGCTTCTGAACTTGACCT-------CGT---TTGAACT-AT-CCTGAACACCTCACGTTTAACCAA---ATTTGATGAACAATAACTTAACATTAAACCAATGAAATCCTTTGT---AACAAACC---------TAAACAATCTCT-CAG------AT-ACA--A-T-----GTAAA--TGAAAAATTA-----TAAAT-------TACAAATG---AT--TTTT----TACAATTT-----A-----A----AT----AAAACCCTA-TAGA--A--TACAAA--T----------A----A---AA----AT---TTATACAAAACAAAAAAAAAAAAAA-------AT------------TA----CAC--A---ATACAAATA-TAAA--A---------T-atatcgaacaattatacaatatacaatacgaataaagaattcc
gi|5 : tatACGAATGAAATCCTTCATCATAACAAATC----AAA-ATAAACAATCACT-CGG------AT-AC-------------------------TTG-----TA---------ATACAAATG---AAAGATTT----TGCAATAC-----A-----AATGGAA----A-----TCA-T-GC--ATTTACAAA--T----------GA-ACATTTAC----AT--AATATAC-ATAA------------AA-------AA------------TA----TAG--A---ATACAAATG-GAAA--AGTGTACAATT-AT--AT---GCG---TAGAAAATGTACATTACACATTCAA------------AG------TTATACA-GTT--CAAA--TG-GAAA-C-T-ATAGAAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgggaaacattcaactcaatcaatcgatcaaatgggaaatattcaatatgaaggaaaaaaattaca
gi|5 : agctagtgatgtctcaataagagttaaaatctcgcgaagagaggtcgttg-A-----GAAAA--T------GTACAT--TACAC------ATTCAAA-G--------TTA----TACAGTTC-----A-----A----ATGGAAA-----CTA-TAGA--A------AA--C----------AC-ATC---GA----AA--ATTATACAATAC------------AA-------ATGAAATGAAAAATTA----TAC--A---ACATGAATA-GAAA--A---------T-AT--A----CAG---TG-CAAATGGA-------------G------------AA------TTATAGA-ATA--GAAA--AG-GAAA-A-T-acatcgaaaattatacaatacaaatgaaatgaaaaattatacaacatgaatagaaaatatacagtgcaaatggagaattatagaatagaaaaggaaaatttcaaataaattgcaatgtttgacatgcca
gi|6 : agctagtgatgtctcaataagagttaaaatctcgcgaagagaggtcgttgacgaatgaaatccttcatcataacaaatcaaaataaacaatcactcggatacttgtaatacaaatgaaagattttgcaatacaaatggaaatcatgcatttacaaatgaacatttacataatatacataaaaaatatagaatacaaatggaaaagtgtacaattatatgcgtAACCCTTTGT---ATCAAACC----AAA-ATATACAATCTCT-C-GTGTACAAT-ACC--A-AT----GCAAAAGT------TT------TACA-------ATGCAAATG---ACT-CTTT----TACAGTACAAATTA-----A----AT----A-----TCA-TAGATTA--AACAAAAGT----------AATGGA---AA----AA--AATACGCAATAT------------AA-------AC------------T-----TAA--G---ATTTACATGTGAAA--A---------T-AT--A----CAA---TT-CAAATGAAA-------------------------AG------TTATGCA-ACA--CAAA--TGAGAAATA-T-ATACAATACttcaaataaattgcaatgtttgacatgcca
gi|6 : CA--A-T-----ATAAA--C------TTAAGATTTACAT------GTGAAAATA---------------TACAATTC-----A-----A----AT----GAAAAGTTA-TGCA--A--CACAAA--T----------GA-G-----AA----AT--AT-ATACAATACTATTTG------AA-------GA------------TA----TA---A---ATACAAGTG--AAA--A---------T-AT--A----AAA---TA-CATATTAAAA------------------------AA------TTATACA-TTA--CAAA--TG-GAAA-A-T-ACACATTACtatttgaagatataaatacaagtgaaaatataaaatacatattaaaaaattatacattacaaatggaaaatacacattacaaatggaaaaaaaattatacagtgtgaattctttttaataaatacggaaaagatcaaatattgcaacgttaggca
gi|7 : aaccctttgtatcaaaccaaaatatacaatctctcgtgtacaataccaatgcaaaagttttacaatgcaaatgactcttttacagtacaaattaaatatcatagattaaacaaaagtaatggaaaaaaatacgTGTATTC--AGCAA-------ATACGG---A---ACTTTCCTGCTAAG-TAT-GGCTCTTTCACTAGACCC-------CGT---GTAAACC-AT-CTGAAACACGTTACGT------------------------TAACTTGATATCAAACCAATAAAATCCTTTGT---AACGAACC----AAA-------------T-C-G------AT--------------GAAAA--A------TTA-----CACA-------ATACAAATG---ATC-TCTT----CACAATGT----------------AT----G-----TCATTAGA--A--TGCAAA--T-------------AT-----A----AC--ACTATGTAACAC------------AA-------AT--------------------G--A---ATCC---CG-G---------------T-AC--A------G---TA-TAAATGATAATG----AA---G------------AA------TTACACA-ATA--CAAC--TG-AAAA-T-T-ATGCAATACaaatggaaaaaaaattatacagtgtgaattctttttaataaatacggaaaagatcaaatattgcaacgttaggca
gi|8 : CGTTTTAT----TTTTGTCCGNNNNNNNNNNNNNNNNNNNNNNN-------N--------NNNNNNNNN-NNNNNNNNNNNNN-NNNNNN---NNNNNNNNNNNN-NNNNNN-NNNNNNNNA-AT-A-T-CAA----TTACTG------CGTTCTC----CCGTTC-A-A----T-------------T----TGTTT----------TTGCAGATAGATAGATCACTCGTTAAACACAAGGTTAAGGTTAAAT-GTCGCTACCCGAAATAGACGCATAAAAGT--GA-AATGTTTTCTT-C--------A-------T-TTTT------------G--AGAGGGCACTTAATTCATGCCACAGCATTT--AGCAG-------ATACGGT---T---CTTTCCTGCAAAA-CTTAGATTCCCGAACTTTACCgattgggaataatcaaatattacaacgcttaacac
gi|9 : CAATAGAATCCTTCAT---AATAAATG----AAA-ATGAACA-CCCCT-C-GG-----AT-GCA--T-A------AAAA--T------TGA--------------------AAAT----------TT----TATAATTC-----A-----A----ATGCAAA-----TCA-GACA--A--TACAAA--T----------AA-A-A---GATTTTAG--ACTATAGAAAAC------------AATTGGAAAAT------------TA----TAT--A---ATACAATTG-GAAA--A---------T----------ACGCATTA-CAACTGGA------------------------------------ATACA-ACA--CAAA--TG-GAAA-A-T-
blockSeqs : G TC C CCC T TTC TTAC A T T TTTCTCA TCAAAT AGTA C ATAT T A AGTTTACCCCCTA T AA TT T ACT CTC T G G AG TTCAAGACACC GT G AACCCCCC CTTT AC GTAGATAGTTTGGTCAC . CA A G ATCACTCGTTAA C C G TAAGG . TT TTATTTTTTTTTTTTTTTTTTTTTTG G TTAA TTTTT CGTATAA A T T C AAAT A T TGCACAA GTAG T G A GG A AACCGAATTCGATGAACGAT G T CAT TCTT T CGTGTACAATACCAATGCAAAAGTTTTACAATGCAAATGACTC TCAG T AAATACAAGA T TT TTT G TAAAAGATTACAAATA TTTT GGA AAAAAAAAAAAAAAATTA TTA ATT T TC GTGTACAAT T AC GAATACA G TGTATAGAAAAGGAAATTAA G AT CT A T G G
blockSeqs : G C . . A TC TC A G C ATGCCA . AATA G . . A ACCTCGCCCACT C C GG C TA . C G . G TCCGAGTCACT GC A TC . GG C . . AAATTCATAGATTTATTCTTTCT T . TTT . G T T G AAA . T . T . . C CG T TACCGAATTCGATAAACAAT T T . . . AAGATACAATACCAGTGGAAATTATGCAATACAAATGAAAAG . G AAATAAAACC . . T C TGGAAGTTTGAAATA . A AAATGAAATGAAAAATTA C . . T . . . ACGCAT . CATTACACATTCAAAG . . . . . T .
blockSeqs : . C . . T GC T A C T GTCCA . CG C . . A NNNNN C C AT C TG . A N . A NNNNNAATAT TC G CG . AG T . AAATTACAAGGTTTATTTTTTT G . TTT . A T A C AAA . T . T . . T CG A AACCAAATTTGATGAACAAT A T . . . CAGATACAATGTAAATGAAAAATTATAAATTACAAATGATT . A AAATTAAATA . . T C TGAACATTT . T AGATGAAAAATTA C . . . . . . TGCG . AATATGAATGTTGT . . . . . T .
blockSeqs : . . G . GTCC . . C . . T CTTC N N AT N TT . C . . T CTATG A . CG . A . AATGTTTTCTTCATTTTTG A . ATG . G T T C AGA . G . G . . G CA A TACCAACTGATCCGAT A T . . . CGGATACAATGTAAATGAAAAATTATACATTACAAATGAT . A AAATGAAAAG . . T C AGTAATGGA . G AATTGGAAAATTA C . . . . . . AAA . TATATGGAAAA . . . . . . .
blockSeqs : C . . A ACT . . NN . NN . N . . N CCT . . C . G . TTC . A T T A AAG . T . G . . T CT A TACCATATTCTATA G T . . . CGGATACACTAAAAATGAAAAATTGTACAACATAAATTGT . T AAATGGAAA . . T C ATAATA . T AGATGGAAAATA T . . . . . . CAC . AATGAAGAA . . . . . . .
blockSeqs : . . . N G . . . TTT . G T T G AAA . T . T . . C CA A GCGTACA A C . . . AATGAAATGTTATACATTTTAAAATACAAATGGATT . A AAATGGAAA . . T C CACATC . T TATTTGAAGATA C . . . . . . CAA . AACATACA . . . . . . .
blockSeqs : . . . . . . G T . C A . C . G . . C TA T T C T . . . CGATGAAAAATTACACAATACAAATGATCT . T AAATGCAAA . . A C AAATT . A AATTTAGAAA C . . . . . . AAA . AAGAGGAA . . . . . . .
blockSeqs : . . . . . C . . . . . . . T . . . T T . . . CGGATACTTGTAATACAAATGAAAGA . A AAAGA . . C C TAAAA . A AAATGA C . . . . . . CAG . AAATTA . . . . . . .
blockSeqs : . . . . . . . . C . . . AAATAAGAAAATAAATTACATTTCA . T AAAGA . . T C TAAAA . T AAAATA G . . . . . . CAA . AGAAAA . . . . . . .
blockSeqs : T . . . CGGATGCATAAAAATTGAAAAT . G ATG . . T . TGAG . C AAACT C . . . . . . AAA . AAAA . . . . . . .
blockSeqs : T . . . . T . . . . TAA . G AAAT A . . . . . . AG . AAT . . . . . . .
blockSeqs : C . . . TAT G . . . . . . AC . AAA . . . . . . .
blockSeqs : T . . . . . . A . ATG . . . . . . .
blockSeqs : . . . . . . . G . GAA . . . . . . .
blockSeqs : . . . . . . AAG . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqCons : T*** NTCCA******* CG** ACT***************** AG* ACCGAATTGATACGAT******* AAATGAAA******************** TAAAA***************** AAATGAAAAATTA**************************** AAAA******************************
originalCons : TGGCGGATCCGGCGC-CCGG-GCGC---ANCCCCGTC----ACAAT--CATATGATCTATTTNTTATAGAAATG----TTC-CA-AAAAAGCAT------GTACGTATACGTTTTAT----TTT-GTCAGAACTCAGTAGTTTCAGGGGACTT-------T--------GGGCCCCAC-CAAGGNTTCGCCC-TNGATT---CACNAGAAGTCT-CAAGAC-GGCTCTCGA-AT-A-C-CAGCCGTTTACTG------CGTCCTC----CCGTTC-A-AAATTT-------------TCA-CTGGTTAAACACAACGTTGCAGNTAGATAGATCACTCGTTAAANANAAGNCTAAG-TTAAAT-GTCGCTATTCGCAATAGGCGCATAAAAGC--GA-AA------ATT-CA-------A-------T-TTTT------------G--AGGGGGAAC----TTCACGCCATTGCATTT--AGCAA-------ATACGGTGCATGTACTTTCCTGCGAAA-CGT-GGCTCCTGAACTTGACCT-------CGT---GTAAACC-AT-CNTGAACACCTCGCGCATTACCGA---ATTCGAT--AC-ATAACTTAANATTAAACCAATGAAATCCTTCGT---AACAAACC----AAA-ATAAACAATCCCT-C-G------AT-ACA--A-A-----GNAAA--T------TTA-----TACAT------ATACAAATG---A---TTTT----TACAATNC-----A-----A----AN----A-----TTA-TAGA--A--TACAAA--T----------AA-ATA---AA----AN--ATTATACAACAC------------AA-------AT------------TA----TAC--A---ATACAAATG-GAAA--A---------T-AT--A----ACG---TA-CAAATGAAAAT-----AT---G------------AA------TTATACA-ATA--CAAA--TG-GAAA-A-T-ATACAATAC
finalCons : TGGCGGATCCGGCGC-CCGG-GCGC---ANCCCCGTC----ACAAT---ATATGATCTATTTNTTATAGAAATNTCCA-------AAAAAGCAT------GTACG--TACGTTTTAT----TTT-GTCAGAACTCAGTAGTTTCAGGGGACT-----------------GGGCCCCAC-CAAGGNTTCGCCC-TNGATT---CACNAGAAGTCT-CAAGAC-GGCTCTCGA-AT-A-C-CAGCCGTTTACTG------CGTCCTC----CCGTTCAG-AAATTT-------------TCA-CTGGTTAAACACAACGTTGCAGNTAGATAGATCACTCGTTAAANANAAGNCTAAG-TTAAAT-GTCGCTATTCGCAATAGGCGCATAAAAGC--GA-AA------ATT-CA-------A-------T-TTTT------------G--AGGGGGAAC----TTCACGCCATTGCATTT--AGCAA-------ATACGGTGCATGTACTTTCCTGCGAAA-CGT-GGCTCCTGAACTTGACCT-------CGT---GTAAACC-AT-CNTGAACACCTCGCGCATACCGAATTGATACGAT-------AACTTAANATTAAACCAATGAAATCCTTCGT---AACAAACC----AAA-ATAAACAATCCCT-C-G------AT-ACA--A-A-----GNAAA--T------TTA-----TACAT------ATACAAATG---A---TTTT----TACAATNCAAATGAAA--------------------TTA-TAGA--A--TACAAATAAAA-----------------AA----AN--ATTATACAACACAAATGAAAAATTA----------------------------TAC--A---ATACAAATG-GAAA--A---------T-AT--A----ACG---TA-CAAATGAAAAAA------------------------------TTATACA-ATA--CAAA--TG-GAAA-A-T-ATACAATAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAAAGGTTTATAATACAATTAAAAGATTATACAACTTAAAGAAGAAAAAATATTATTTACAAATGGAAAATAACAATGTACAATACTATGATACAATTCAGTTGAAAAATCATACTATAGCAAAATAGAAAATATACCAATTACAATTTTCAAAAGAAGTGTACAATATGTTTTTTTTTTTAGCAATACAATTGTAAAAGATCAAATATTGCTACGTTTGACATGTCA
Unaligned ( gi|27 ): AATAGAAATGCAAAATTATACATTATAGATGAAACATTTTACAATACAAATAAAAATATCAAATATTGCAACGTTTGA
Unaligned ( gi|28 ): ATACGATTGAAAATACATTACAAATGGGAAAAGATAAATTTTGCGACGATAGGCATGCCAT
Unaligned ( gi|29 ): TCAGTAGAAATACAAATAAATTTATACATCAATACATCATTATCAAAGAAAGGACT
Unaligned ( gi|30 ): TTCAACATGAGGCTGATCAGCGAGGAGAGAAATTTAATTTTCCCAAGGGGA
Unaligned ( gi|31 ): AAATCATTTTTTAAAAATTCAAATATTGCAACGTTGCAT
Alignments
lowQualScore : 111 1 111 2222222 33333 1 22222222 5555555555555555555555 66666666666666666666666666 111 1 55555555555555 22222222 1111 1 777777777777777777 2222222222 11 1 333333333333 1111 1 11 444444444444444444444444444444444444444444444444444 1111 11111 1111111 1111111 77777777777777777777777777 5555555555555555555555555555555555555555555555555555555555555 3333333 111111111111111 555555555555555555555555555555555555555555555555555555555 22222222222 3333333333333333333333333333333 11111
lowQualScore : 0 2 999 0 777 1 3333333 33333 0 1 3 33333333 8 99 1111111111111111111111 2 1 0 0 1 66666666666666666666666666 8 11 6 888 444 1 0 8 0 99 33333333333333 66 1 11111111 4444 5 555555555555555555 8888888888 88 1 5 444444444444 1 1 1 8888 3 11 444444444444444444444444444444444444444444444444444 6 2222 00000 3333333 3 3 5 2 6666 4 0 2 4444444 1 777 4 4 1 0 44444444444444444444444444 0 1 4 3 0 555 3 6666 3 44 1 4444444444444444444444444444444444444444444444444444444444444 2222222 2 33 44 0 999999999999999 2 1 33 2 4444444 33 222222222222222222222222222222222222222222222222222222222 1 33 55555 33 88888 2 888888 444 444 99999 33 2 77777777777 2 2 1111111111111111111111111111111 2 33 2 3 3 22222 3
lowQualScore : . . ... . ... . ....... ..... . . . ........ . .. ...................... . . . . . .......................... . .. . ... ... . . . . .. .............. .. . ........ .... . .................. .......... .. . . ............ . . . .... . .. ................................................... . .... ..... ....... . . . . .... . . . ....... . ... . . . . .......................... . . . . . ... . .... . .. . ............................................................. ....... . .. .. . ............... . . .. . ....... .. ......................................................... . .. ..... .. ..... . ...... ... ... ..... .. . ........... . . ............................... . .. . . . ..... .
lowQualScore : 2 5 000 0 555 0 0000000 44444 6 0 8 00000000 0 44 0000000000000000000000 5 4 1 6 7 66666666666666666666666666 0 66 4 222 000 0 0 0 8 44 77777777777777 22 0 22222222 2222 0 222222222222222222 3333333333 00 0 0 000000000000 0 0 0 0000 3 00 444444444444444444444444444444444444444444444444444 6 1111 88888 0000000 9 4 8 5 7777 0 7 2 4444444 1 888 4 4 0 9 11111111111111111111111111 1 0 0 1 3 444 1 5555 1 22 4 0000000000000000000000000000000000000000000000000000000000000 5555555 0 77 66 7 999999999999999 4 1 11 2 4444444 11 666666666666666666666666666666666666666666666666666666666 4 22 66666 11 66666 7 444444 444 444 22222 44 5 77777777777 7 7 4444444444444444444444444444444 9 99 9 1 1 77777 6
consensus : TGGCGGATCCGGCGC-CCGG-GCGC---ANCCCCGTC----ACAAT---ATATGATCTATTTNTTATAGAAATG-----T-CCA-AAAAAGCAC----------G-TAC----GT-ACGTTTTATTTTGTCAGAACTCAGTAGTTTCAGGGGA---------C---------T--GGGCCCCAC-CAAGGNTTCGCCC-TNGATT---CACNAGAAGTCT-CAAGAC-GGCTCTCGA-AT-A-C-CAGCCGTTTACTG------CGTCCTC----CCGTTCAGAAATTT-------------TCA-CTGGTTAAACACAACNTTGCAGNTAGATAGATCACTCGTTAAANANAAGNCTAAG-TTAAAT-GTCGCTATTCGCAATAGGCGCATAAAAGC--GA-AA------ATT-CA-------A-------T-TTTT------------G--AGGGGGAAC----TTCACGCCATTGCATTT--AGCAA-------ATACGGTGCATGTACTTTCCTGCGAAA-CGT-GGCTCCTGAACTTGACCTCG-------TGTA---AACC-AT-CNTGAACACCTCGCGCA-TA-CCGAATT-GAT--A--CGATAACTTAANATT-AAACCAATG-AAATCCTTCGT---A-ACAAACC----AAA-AT--AAACAATCCCTC-G----------ATACA-----AA-GNAA-A--T------TTA-----TACAT------ATACAAATG---A--TTTTT--ACAATN-CAAAT--G-----AA--A--TT-ATAGA--ATA-CA---A---A--T---------AA---A-A-----------AA----A---AT-----------------TATACAATA--C-----AAA--T-----GAAAAA-----TT---ATACAAT---ACAAATG----GAAAA--T-AT--A-A-CG---TACA-AAT-GGA--------------A----A----A--A-TT-A--TACA-ATACAAATG-GAAA-A-----T-ATACAATAC
Reference ( family-2042 ) : TGGCGGATCCGGCGC-CCGG-GCGC---ANCCCCGTC----ACAAT---ATATGATCTATTTNTTATAGAAATN-----T-CCA-AAAAAGCAT----------G-TAC----GT-ACGTTTTATTTTGTCAGAACTCAGTAGTTTCAGGGGA---------C---------T--GGGCCCCAC-CAAGGNTTCGCCC-TNGATT---CACNAGAAGTCT-CAAGAC-GGCTCTCGA-AT-A-C-CAGCCGTTTACTG------CGTCCTC----CCGTTCAGAAATTT-------------TCA-CTGGTTAAACACAACGTTGCAGNTAGATAGATCACTCGTTAAANANAAGNCTAAG-TTAAAT-GTCGCTATTCGCAATAGGCGCATAAAAGC--GA-AA------ATT-CA-------A-------T-TTTT------------G--AGGGGGAAC----TTCACGCCATTGCATTT--AGCAA-------ATACGGTGCATGTACTTTCCTGCGAAA-CGT-GGCTCCTGAACTTGACCTCG-------TGTA---AACC-AT-CNTGAACACCTCGCGCA-TA-CCGAATT-GAT--A--CGATAACTTAANATT-AAACCAATG-AAATCCTTCGT---A-ACAAACC----AAA-AT--AAACAATCCCTC-G----------ATACA-----AA-GNAA-A--T------TTA-----TACAT------ATACAAATG---A--TTTTT--ACAATN-CAAAT--G-----AA--A--TT-ATAGA--ATA-CA---A---A--T---------AA---A-A-----------AA----AN--AT-----------------TATACAACA--C-----AAA--T-----GAAAAA-----TT---ATACAAT---ACAAATG----GAAAA--T-AT--A-A-CG---TACA-AAT-GAA--------------A----A----A--A-TT-A--TACA-ATACAAATG-GAAA-A-----T-ATACAATAC
gi|1 : TGGCGGATCCAGCGCGCCGG-GCAC---AACCCCATCCCTCACAA----ATATGATTT-TTTTTTATACAAATACAGTTT-CCACAAAAAGCAC----------G-TAC----GTTACGTTTTATTTTGTCAGAATTCGGTAGTATCAGGGGA---------C---------TTTGGACCCCAC-CAAGGCGTTGTCC-AATACT---CACAAGAAGTCT-CAAGAC-AGCTCTCAA-AT-ATT-CAGCCGTTTACTG------CATACTC----CCGTTCA-AAATTT-------------TCATTTGGTTAA
gi|1 : AAG-TTTGATTGTCGCTATTCGCAAAAGGCACATAAAA-T--GATAA------ATT-CA-------A-------T-TGTT------------G--AGGAGGAAC----TTTACGCCATTGCATAT--AGCAA-------ATACGGCACAAGTATTTCCCTGAGAAA-CGT-GGCTCCTGAACCTGACCTCT-------TGTA---AGCC-AT-CGTAAACACCGCGCGCATTA-CCAAATT--------------ACTCAAGATG-AAACCAAGA-AAATCCTTCGT---A-ACAAATC----AAA-AT--AAACAAACC--C-A----------ATACA-----AA-GGGA-A--T------TTA-----TACAT------ACATATATG---A--TTTTT--ATAATA-CAA----------AG--A--TT-AGAGA--ATA-CA---A---A--T---------AA---ATA-----------AA----AG--AT-----------------TATACAACT--C-----AAG--T-----A---------------ATGCAAT---ACAAATG----GAAGA--T-GT--G-A-CG---TGCA-AAT-GAA--------------A----ATATGA--ATTT-A--TACA-ATACAAGTA-GAAA-A-----T-ATACAATACtaagcgacggaaagtttgattgtcgctattcgcaaaaggcacataaaatgataaattcaattgttgaggaggaactttacgccattgcatatagcaaatacggcacaagtatttccctgagaaacgtggctcctgaacctgacctcttgtaagccatcgtaaacaccgcgcgcattaccaaattactcaagatgaaaccaagaaaatccttcgtaacaaatcaaaataaacaaacccaatacaaagggaatttatacatacatatatgatttttataatacaaagattagagaatacaaataaataaaagattatacaactcaagtaatgcaatacaaatggaagatgtgacgtgcaaatgaaaatatgaatttatacaatacaagtagaaaatatacaatacc
gi|10 : tggcggatccagcgcgccgggcacaaccccatccctcacaaatatgatttttttttatacaaatacagtttccacaaaaagcacgtacgttacgttttattttgtcagaattcggtagtatcaggggactttggaccccaccaaggcgttgtccaatactcacaagaagtctcaagacagctctcaaatattcagccgtttactgcatactcccgttcaaaattttcatttggttaataagcgacggaA-------A-------T-TTTTTC----------G--AGAGG-AAC----TCCACGTCATTGCATTT--AGCAACGTATAAATACGGTACGTGTACTTTCCTGCGA---------------AACTTGACCTCG-------TTCA---AACC-GCGCATT-AC-CCGGGCGCATTA-CC-AACT-GAT--C--CGAT-------GATT-AACCCAATG-CAGTCCTTTGT---A-ACAAATCTCTTAGATAT--GTACAA------------------ACACA-----AA-ATAA-G--A------AAA-----TAAAT-------TACA-----------TTTC--ACTCTA-CAAAT--A-----AAAGA--CT-ATAGA--TTAGAA---A---A--T---------AA---T-A-----------Ac
gi|11 : tGCTGATCCGGCGC-C-GG-GCGC---ATCCCC-TC----ATGATC--ACAT--TCT-TTTTTTAAAGAAATG-----T-CCA-ATAAAGCAT----------G-TAC----G----GTTTG--TGTGTCAGAACTCAGTAGTTTCAGGGGA---------T---------T--c
gi|13 : ccGGCGGATCCTGCGC-C-AG-GCGC---AACCCCG-C----ACAATTACATCTGATCTATTGGT-ATAGAAATG-----T-CCA-AAAG-GCAT----------G-TA------T-A-GTTC-ATTTTGTCAGAACTAAGTAGATTCAGAGGA---------CCTCGCCCACT--GGGTCTCAC-CAAGGTTTTGCCC-TAGATT---CACTTAAGGTCT-CAAGACAGGCCCT------------AGTCGTTTTCTAAACCCCCCCTCTC----CCGTTCACAAATCT-------------tctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctgttcaaaattttctagatccgccgctgaaagta
gi|14 : ACGATATTGCA------G-AA-------GTGTGGTGCATGTAC----ATGGG----CGT-GACTTCTGAACTTGATCTCG-------TTTT---CATCTAT-TCTGAACACCTCGCGCT-TAACCGAATTCGATGAA--CGATAACTTAATATT-AAACCAATG-AAATCCATTGT---A-ACAAACC----AAA-AT--AAACAATCTCTCGG----------ATACA-----AT-GTAA-A--TGAAAAATTA-----TACAT-------TACAAATG---A--TTctagatcaac
gi|15 : tTTAT--ACAACT-CATAT--GG----AA--A--AT-GTAGA--ATA-CATACATGTA--T---------AT---ATG-----------GA----AA--AT-----------------TACACAATAATT-----ATACTT-----GAAAAA-----GT---ATACAGT---ATAAATG-------AA--T-AT--A-AACAA--TATA-AAT-GGA--------------A----A----A----TT-AAATACA-ATATGACTG-G-AA-A-----T-ATACAA
gi|16 : aATAGGCGCATTAAAGC--GA-TT------ATT-TT-------T-------T-TTTTTTTTTTTTTTTTG--GTGGGGAAC----ATTACGACATTGCATTTTTAGCAA-------AATCAGTACA---A---------GAAA-CGT-GGTTCCTGAAGTTGACCTCG-------TGTA---AAGC-AA-TTTGGACACCTCGCACATTA-CCATATT---------CTATAAACGAGAACTGAAACCAATA-ACATCCTTTGataaaaatgcttacaaggaaaattctgaatattgcaacgtccgacatgccat
gi|17 : ttgaatAGA--ATA-CA---A---A--TGGAAGTTTGAA---A-T-----------AG----AA--AA-----------------TATACAACA--C-----AAT--TTA---GAAATA-----TT---A---AAT---ACAAATG----T-AAA--T-AT--AGA-AG---TACA-AAT-GAA--------------A----A----ATTA-TT-G--T-CA-ATACAAAAG-GAAA-AT----T-ATACAAT
gi|18 : tcaaaggggcattatataggGCAA-------ATACGGTGCATGTACTTTCCAGCGAAA-CGT-GGGTCC-GAACTTGACCTCA-------TGTAGTAAACC-AT-CGTGAACACCTCACACA-TA-T----------------------TTAGAAAT-AAACCAATG-AAATCCTTTGT---A-ACAGGCC----AAA-AT--AAACAATCCCTC-A----------ATATA---------TAT-A--T------ATA-----TATAT------ATAtcaaacaagaataaattactattcaacgtttgacatgctat
gi|19 : gT-ACGTCTTATTTTGTCAGAACTCAGCTGTTGCAGGAGG----------------------GGG--------AGGGGGTCACCCACTGGTTCTCCACCAGGA-TCTGCTGG---GGCT-TCAAGAC-ACC-CAGCCATTTACTG------TCTCCCCCTTTCCATTCGGAAATTT-----------------CTGGt
gi|2 : caaaaataaCAGTAGTTTCTGGGGAGTTTACCCCC---------TA-GGGCCCCAAACAAAGATT-ACCA-TGGATT---CACAAGGA-TTT-CAAGAC-AGC-CT----AT-G----------TTACTG------CGTC-TC----CCATTCAGAAATTTGTAGATAGTTTGGTCA-CTGGTTAAACACAACGTTG--ATTA-ATAG------CG----AGAGAAATCT-----TAAAT-GTCGCTTTTTGCAATGGGCGCATAAAAGC--AA-AA------ATTACA-------AGGTTTATT-TTTT------------T--AGGGG-AAT----TTCACGCAGTTTCATTT--ACCAA-------ATACGGTACATGTACATTCCCGCGAAATCGT-GGATCCTGAACTTGACCCTGCACAATGTGTA---AACC-AA-TTAAAACACCTCGCAT--TA-CCGAATTCGAT--AAACAATAACCTAAGATT-AAACCAATG-AAATCCTTTGC---A-ACAAAAC----TAA-AT--AAACGGTCCCT-----------------------AA-TGAA-A--TG-----TTA-----TACATTTTAAAATACAAATG---GATTTTTT--ACAATG-CAAATACA-----AG--A--TT-ATAGA--TTA--A---A---A--T----------------T-----------AA----AT--AT-----------------TACACATCA--C-----AAA--T-----GAAAAAAGAAGGT---ATAAAAT---ACAAAT-----GAAAA--C-AT----A-CA---TATATAATAAAA--------------A----A----A--A-AT-A--TACA-ATGCAAATG-GAAA-atctgccact
gi|20 : TATTTTGTCATAACTCAG-AATCTC---TGA---------C---------T------CCCAC-CAGGAATTCACCC-TTGATC---CACCAGAGGTCT-CAAGAC-TTCTC-CGA-GTCA-CTCATCCGTTTACTG------C-TCCCC----TC
gi|21 : tataggtcttata-ATAGA--A-A--A---G---A--T---------AA---A-A-----------AG----AGGAAT-----------------TATACAATA--C-----AGA--T-----GGAAAA------T---ATACACT---ACAGATG----GAAAA--T-ATACA-A-C-----ACA-AAT-G----------------A----A----A--A-TTCA--TGCAGAT-CAAATtctcccccgttc
gi|21 : -----AAA--A-----GAGGAA-----TT---ATACAAT---ACAGATG----GAAAA--T-AT--ACA-C----TACA-GAT-GGA--------------A----A----A-----T-A--TACA-ACACAAATG-AAAA-attgcaacgtttaatatgtc
gi|22 : atagaaaagata------ATATGAATGTT-G--TTTTT--ATAATA-CAAAT--G-----GACAA--TT-ATACA--ATA-CG---A---A--T---------GA---A-A-----------GA----AA--AA-----------------TATATAATA--C-----AAA--T-----GGAAAA-----ttcatgcagatcaaatattgcaacgtttaatatgtc
gi|23 : gcaC----ACAAT----TATGATTCATTTCTCATTGAAGTA-----TGCCA-AAAAAGCATTCAAATATAAG-TA------T-ACGTCTTAGTTTTTCCTACCTCAGTAGCATCAGGGGgatcagatattgcaacgtttggcatgccata
gi|24 : TGGCGGATTCGAC-C-TCGACGCGCCCCATCCCCTTC----ACAA----ATATGATCTATTTGTTATAGATTTT-----C-TCA-AAA---CAC----------GATACAAATAT-ACGCTTTATTTTGTcttcgaaccc
gi|25 : cagT-GAACAAATG-AAATCCTTCAT---A-ACAAATC----AAA-AT--AAACAATCCCT-----------------------AA-G----------------A-----TACA-------ATACCAGTG---------------------------G-----AA--A--TT-ATGCA--ATA-CA---A---A--T---------GA---A-A-----------A---------GT-----------------TACACAACA--C-----AAA--T-----
gi|26 : -ATACA--ATA-CA---A---A--T---------GG---A-A-----------A----------T-----------------CATGCAATA--A-----AAA--T-----GAAATG-----TT---ACACATT---ACAAATA----GAAAA--T-AT--A-G-AA---TACA-AAT-GGA--------------A----
gi|3 : agAAAGTTTGA-AA------ATT-CATAGATTTA-------T-TCTT------------TCTAGGGAGAAC----TTCATGCTATTGCAATG--AGCAA-------ATACGGTGCATGTACTTTCCTGAGAGA-CGT-TGCTCAGGAA------------------------AACC-AT-CCTTAACACCTCTCGCA-TG-C--------GT--A--CAA--ATTTAAAATT-AAAGTAATG-AAATCCTTTGT---A-ACAAACC----AAA-AT--AAACAATCCCTC-GG---------ATACACTAAAAATGAAA-A--A------TTG-----TACA-------ACATAAATT---G--TTTTT---CAGTA-CAA-T--A-----AA--AGATT-ATACA--ATA-CA---G---A--T---------AA---A-AGATTACAAATAAA----AG--AT-----------------TATACAACG--C-----AGA--T-----GAAAAA-----TT---ATGCAATTATACAAATG----AAAGA--T-AC--G-A-AA---TATA-AAT-GAATGTATAGAAAAGGAA----ATT--A--A-TT-A--TACA-TTTCAAATG-AAAA-A-----TGATGCAA
gi|4 : tgatacgaggttgacgagA-------A-------TATTTT------------G--TAAGGAAAT----GTAACGCCATTGCA------G-AA-------GTGTGGTGCATGTAC----ATGGG----CGT-GGCTTCTGAACTTGACCTCG-------TTTG---AACT-AT-CCTGAACACCTCACGTT-TAACCAAATTTGATGAA--CAATAACTTAACATT-AAACCAATG-AAATCCTTTGT---A-ACAAACC---------T--AAACAATCTCTCAG----------ATACA-----AT-GTAA-A--TGAAAAATTA-----TAAAT-------TACAAATG---AT-TTTTT--ACAATT-TAAAT--A-----AA--ACCCT-ATAGA--ATA-CA---A---A--T---------AA---A-A-----------A---------TT-----------------TATACAAAA--CAAAAAAAA--A-----AAAAAA-----TT---ACACAAT---ACAAATA----TAAAA--T-atatcgaacaattatacaatatacaatacgaataaagaattcc
gi|5 : tatACGAATG-AAATCCTTCATCATA-ACAAATC----AAA-AT--AAACAATCACTC-GGATACTTGTAATACA-----AATGAAAGA--T------TT------TGCA-------ATACAAATGGA-A--ATCAT--GCATTTACAAAT--G-----AAC-A--TTTACATA--ATA-TA---C---A--T---------AA---A-A-----------AA---------------------------TATAGAATA--C-----AAA--T-----GGAAAA-----GT---GTACAAT----TATATGCGTAGAAAA--T-GT--A-C-AT---TACA-CAT-TCA--------------A----A----G----TT-A--TACA-GTTCAAATG-GAAA-C-----T-ATAGAAAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgggaaacattcaactcaatcaatcgatcaaatgggaaatattcaatatgaaggaaaaaaattaca
gi|5 : agctagtgatgtctcaataagagttaaaatctcgcgaagagaggtcgttgACAAATGGAAATCATGCAT---TTACAAATG----AAC-ATTTACATAAT-----------------ATACA-----TA-AAAA-A--T--------A-----TAGA-------ATACAAATGGAAA--AGTGT--ACAATT--ATAT--GCGTAGAA--A--AT-GTACA--TTA-CA---C---A--T---------TC---A-A-----------AG---------T-----------------TATACAGTT--C-----AAA--T-----GGAAA------CT---ATAGAAA---ACACATC----GAAAA--TTAT--A-C-AA---TACA-AAT-GAA--------------ATGAAA----A--A-TT-A--TACA-ACATGAATA-GAAA-A-----T-ATACAGTGCacatcgaaaattatacaatacaaatgaaatgaaaaattatacaacatgaatagaaaatatacagtgcaaatggagaattatagaatagaaaaggaaaatttcaaataaattgcaatgtttgacatgcca
gi|5 : agctagtgatgtctcaataagagttaaaatctcgcgaagagaggtcgttgacgaatgaaatccttcatcataacaaatcaaaataaacaatcactcggatacttgtaatacaaatgaaagattttgcaatA-GAAA-A--T------GTACAT--TACAC------ATTCAAA-G-------TTAT--ACAGTT-CAAAT--GG----AA--A--CT-ATAGA--AAA-CA---C---A--T---------CG---A-A-----------AA---------T-----------------TATACAATA--C-----AAA--TGAAATGAAAAA-----TT---ATACAAC---ATGAATA----GAAAA--T-AT--A-C-AG---TGCA-AAT-G-G--------------A----G----A--A-TT-A--TAGA-ATAGAAAAG-GAAA-A-----T-aaatggagaattatagaatagaaaaggaaaatttcaaataaattgcaatgtttgacatgcca
gi|6 : agctagtgatgtctcaataagagttaaaatctcgcgaagagaggtcgttgacgaatgaaatccttcatcataacaaatcaaaataaacaatcactcggatacttgtaatacaaatgaaagattttgcaatacaaatggaaatcatgcatttacaaatgaacatttacataatatacataaaaaatatagaatacaaatggaaaagtgtacaattatatgcgtAACCCTTTGT---A-TCAAACC----AAA-AT--ATACAATCTCTC-GTGTACA----ATACC-----AATGCAA-AAGT------TT------TACA-------ATGCAAATG---ACTCTTTT--ACAGTA-CAAAT--T-----AAATA--TC-ATAGATTAAA-CA---A---AAGT---------AATGGA-A-----------AA----AA--A------------------TACGCAATA--T-----AAA--C-----TTAAGA-----TT----TAC----------ATGT---GAAAA--T-AT--A-C-AA---TTCA-AAT-G-A--------------A----A----A--G-TT-A--TGCA-ACACAAATGAGAAATA-----T-ATACAATACttcaaataaattgcaatgtttgacatgcca
gi|6 : CA-----AT-ATAA-A--C------TTAAGATTTACAT------GTGAAAATA----------T--ACAATT-CAAAT--G-----AA--AAGTT-ATGCA--ACA-CA---A---A--T---------GA---G-A-----------AAT---AT--ATACAATACTATTTGAAGATATA-AATA--C-----AAG--T-----GAAAA-------T---ATAAAAT---ACATATT----AAAAAATT-AT--A-C-AT---TACA-AAT-GGA--------------A----A----A-----T-A--CACA-TTACAAATG-GAAA-AAAAATT-ATACAGTtatttgaagatataaatacaagtgaaaatataaaatacatattaaaaaattatacattacaaatggaaaatacacattacaaatggaaaaaaaattatacagtgtgaattctttttaataaatacggaaaagatcaaatattgcaacgttaggca
gi|7 : aaccctttgtatcaaaccaaaatatacaatctctcgtgtacaataccaatgcaaaagttttacaatgcaaatgactcttttacagtacaaattaaatatcatagattaaacaaaagtaatggaaaaaaatacgTGTATTC--AGCAA-------ATACGG---A---ACTTTCCTGCTAAG-TAT-GGCTCTTTCACTAGACCCCG-------TGTA---AACC-AT-CTGAAACACGT--------------------T--A--CGTTAACTTGATATC-AAACCAATA-AAATCCTTTGT---A-ACGAACC----AAA---------------TC-G----------AT-----------GAAA-A--A------TTA-----CACA-------ATACAAATG---A--TCTCTTCACAATG-TA--T--G-----TC--A--TT-A--GA--ATG-CA---A---A--T---------AT---A-A------------------C--AC-----------------TATGTAACA--C-----AAA--T-----G---AA-----TCCCGGTACAGT---ATAAATG-------------AT--A-A-TG--------------A--------------A----G----A--A-TT-A--CACA-ATACAACTG-AAAA-T-----T-ATGCAATACgtgaattctttttaataaatacggaaaagatcaaatattgcaacgttaggca
gi|8 : A-AT-A-T-CAA----TTACTG------CGTTCTC----CCGTTCA---ATTT--------------------GTT---------TTTGCAGATAGATAGATCACTCGTTAAACACAAGGTTAAGGTTAAAT-GTCGCTACCCGAAATAGACGCATAAAAGT--GA-AATGTTTTCTT-C--------A-------T-TTTT------------G--AGAGGGCACTTAATTCATGCCACAGCATTT--AGCAG-------ATACGGT---T---CTTTCCTGCAAAA-CTTAGATTCCCGAACTTTACCgattgggaataatcaaatattacaacgcttaacac
gi|9 : cgttttatttttgtccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAATA-GAATCCTTCAT---A-ATAAATG----AAA-AT--GAAC-ACCCCTCGG----------ATGCA-----TA--AAA-A--T------TGA--------------------AAA---------TTTT--ATAATT-CAAAT--GC----AA--A--TC-AGACA--ATA-CA---A---A--T---------AA---A-A-----------GATTTTAG--AC-----------------TATAGAAAA--C-----AAT--T-----GGAAAA-----TT---ATATAAT---ACAATTG----GAAAA--T-------A-CGCATTACA-ACT-GGA--------------------------------A--TACA-ACACAAATG-GAAA-A-----T-
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAAAGGTTTATAATACAATTAAAAGATTATACAACTTAAAGAAGAAAAAATATTATTTACAAATGGAAAATAACAATGTACAATACTATGATACAATTCAGTTGAAAAATCATACTATAGCAAAATAGAAAATATACCAATTACAATTTTCAAAAGAAGTGTACAATATGTTTTTTTTTTTAGCAATACAATTGTAAAAGATCAAATATTGCTACGTTTGACATGTCA
Unaligned ( gi|27 ): AATAGAAATGCAAAATTATACATTATAGATGAAACATTTTACAATACAAATAAAAATATCAAATATTGCAACGTTTGA
Unaligned ( gi|28 ): ATACGATTGAAAATACATTACAAATGGGAAAAGATAAATTTTGCGACGATAGGCATGCCAT
Unaligned ( gi|29 ): TCAGTAGAAATACAAATAAATTTATACATCAATACATCATTATCAAAGAAAGGACT
Unaligned ( gi|30 ): TTCAACATGAGGCTGATCAGCGAGGAGAGAAATTTAATTTTCCCAAGGGGA
Unaligned ( gi|31 ): AAATCATTTTTTAAAAATTCAAATATTGCAACGTTGCAT