lowQualScore : 2 1111 11111 11 3333 2222222 111111 11 1 66666666666666666666666666666666 111 1 33333333333333333333333333 111111 1111111 11 22222 1111 11 22222 1 11
lowQualScore : 5 5 5 6 3333 777 7 11111 2 88 777 55 2 2 9 8 1 4 33 5 888 1111 7 0 6666666 666666 0 8 88 1 55 77 1 5555 77 3 0 999999 3 1 00000000000000000000000000000000 6 111 77 4 6 2 3 55 5 666 6 44444444444444444444444444 0 1 333333 44 0000000 22 3 55 3 66666 7777 4 11 00000 0 88
lowQualScore : . . . . .... ... . ..... . .. ... .. . . . . . . .. . ... .... . . ....... ...... . . .. . .. .. . .... .. . . ...... . . ................................ . ... .. . . . . .. . ... . .......................... . . ...... .. ....... .. . .. . ..... .... . .. ..... . ..
lowQualScore : 0 0 0 7 2222 444 4 33333 7 33 888 55 6 9 3 8 2 0 66 0 888 5555 9 6 0000000 000000 8 0 00 2 88 99 4 9999 22 3 8 666666 3 8 33333333333333333333333333333333 7 777 99 1 4 1 0 55 0 444 3 66666666666666666666666666 7 7 111111 22 8888888 44 6 00 6 44444 0000 0 88 00000 0 33
consensus : GATAGTGATCCAA-GAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-T-ATAAACCCT--TTCTAANCTAACCTCT--TACCTCG-GCAGAAG---TAGACTGAGT--GGCTAACTAAACAATTCTGTTGTTCTCCGACACGG-CCC-ACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTNAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACNTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTG--GCTAGCTG-AACAAT-TCTGTTGCTTTCCGACACA------GT-CCTAAGACT------AT-------C----C----T------CAC-ATTC---ACT--CACAGAGCAGAGTGAACAGAGTAACTGAAAAANTCAGC--GCGGCGG---TATTTATACCCTGTTGC--------------------------CCCAAGTTGATTGGCTAATACATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCAC----TNC-NTCACA-----TC-TGCGAGAAA--ATTAAATTGCACAGTTGTGTATAATTT
Reference ( gi|3 ) : GATAGTGATCTAA-GAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-T-ATAAACCCT--TTCTAAGCTAACCTCT--TACCTCG-GTAGAAG---TAGACTGAGT--GGTTAACTAAACAATTGTGTTGTTCTCCGACACGG-CCA-ACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTG--GATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CCTAAGACT------AT-------C----C----T------CAC-ATTC---ACT--CACAGTGCAGAGTGGACAGAGCAACTGGAAAATTCAGC--GCAGCGG---TATTTATACCATGTTGC--------------------------CCCAAATTGGTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCAC----TAC-CTCACA-----TC-TGCGAGAAA--ATTAAATTGCACAGTTGTGTATAATTT
gi|2 : GATAGTGATCTAA-GAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-T-ATAAACCCT--TTCTAAGCTAACCTCT--TACCTCG-GTAGAAG---TAGACTGAGT--GGTTAACTAAACAATTGTGTTGTTCTCCGACACGG-CCA-ACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTG--GATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CCTAAGACT------AT-------C----C----T------CAC-ATTC---ACTA-CACAGTGCAGAGTGGACAGAGCAACTGGAAAATTCAGC--GCAGCGG---TATTTATACCATGTTGC--------------------------CCCAAATTGGTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCAC----TAC-CTCACA-----TC-TGCGAGAAA--ATTAAATTGCACAGTTGTGTATAATTT
gi|4 : GATAATGATTCAA-GAACT-AAACA-ATGACAATAAGCAAACCAACAAGAAGATCACAAA-T-ATAAATCCT--ATCTAATCTAACCTCT---ACTTCG-GTAGAAG---TAGACCGAGT--GGCTAACTAA-CAATTCTGTTGTTCTCCGACACAG-CCC-ACAACTACCGAA-CCT---AACCAACACGA----TTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------TTTGC---T--AAGTCACCA-AGACA-CTAAT-CGTAAAGCCTGGTCACACAGACACAGAACCTTGTCAAGA--AACCGAGTG--GATAGCTG-AACAAT-TCTGTTGCTTTCCGACACG------GT-CCTTAGACTTGC---AC-------CGGC-T----T------CAC-ATTC---ACT--CACAGAGCAGGGTGAACAGAGTAAGTGAGAGATTCAGC--GCGGCGG---TATTTATACCCTGTTGC--------------------------CCCAAGTTGATTGGCTAATACATTA------ACTCATG--ATTGGTAA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATG--------------ATTTCAATCCAC----
gi|6 : GATAGTGATCTAA-GAACT-AAACA-ACGACAATAAGCAAATCAACAAGAAGATCACAAA-T-ATAAACCCT--TTCTAAGCTAACCTC---TACCTCG-GTAGAAG---TAGACTGAGT--GGTTAACT-AACAATTGccttttcatcacacatagagacatttccaaacttatggtgtataaatta
gi|7 : tgGATAATGATTCAA-GAACT-AAACA-ATGACGATAAGCAAATCAACAATAAGATCAAAAA-C--TAAACCCT--ATCTTAACTAACCT-T--TACTTCG--CAAGAG---TAGACTGAGT--AGCTAACTAA-CAATTCTATTGTTCTCCGACACAG-CCC-ACAACTACCGAA-CCT---AACCACCACGA----CTCCCTACTCTTAAATAAAAGACACACAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaggaaccgagtggatagctgaacaattctcttgctttccgacacagtcctaagactatcctcacattcactcacagtgcagagtggacagagcaactggaaaattcagcgcagcggtatttataccatgttgccccaaattggttggttaatatattaactcctgattggtt
gi|8 : atcgttttcttcggtcatatctgGATAATGATTCAA-GAACT-AAACA-ATGACGATAAGCAAATCAACAATAAGATCA-AAA-C--TAAACCCT--ATCTTAACTAACCT-T--TAC-TCG--CAAGAG---TAGACTGAGT--AGCTAACTAA-CAATTCTATTGTTCTCCGACACAG-CCC-ACAACTACCGAA-CCT---AACCACCACGA----CTCCCTACTCTTAAATAAAAGACACACAGtaactgaaaaagtcagcgcggcggcggtatttataccctgttgtcccaaattgattggctaatacattaacttctgttgggttagaaaagcagtaatctgattggctaataattgaaggcatttcaatccacctttttcatcacaataactcgtacaagaaatgactaaacaatatagcctacaca
gi|1 : tatcgttttcttcggtcatatctgATAGTGATCTAA-GAACT-AAACA-ACGACAAATAGCAAATCAACAAGAAGATCACAAAAT-ATAAACCCT--TTCTAAGCTAACCTCT--TACCTCGCGTAGAAG---TAGACTGAGT--GGTTAAC-AAACAATTGTGTTGTTCTCCGACACGG-CCA--CAACTACCGAA-CCT---AACCA--ACGACGATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTG--GATAGCTGAAACAAT-TCTCTTGCTTTCCGACACA------GT-CCTAAGACT------AT-------C----C----TG-----CAC-ATTC---ACTCACACAGTGCAGAGTGGACAGAGCAACTGGAAAATTCAGC--GCAGCGG---TATTTATACCATGTTG---------------------------CCCAAATTGGTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCAC----TAC-CTCACA-----TC-TGCGAGAAA--ATTAAATTGCACAGTTGTGTATAATTTtaactgaaaaagtcagccggcggcggtatttataccctgttgtcccaaattgattggctaatacattaacttctgttgggttagaaaagcagtaatctgattggctaataattgaaggcatttcaatccacctttttcatca
gi|5 : TGATTCAA-GATCTCAAACATACGACAATACGTTAATTAGAAT-AAGATCACAAA-GAATAAACCTTCATCCTAGTCTAACCTCTACTGCCAC--CTAGAAGATATAGACTGAGTGCGGCTAACTAAACAATTCTG-TGTTCTCCGACACAG-CCGTATAACTATCGAATCCT---AACCACCACG---ATTTCaa
gi|9 : gaaggatttggtgcgatctgttaagcgttagatttgaatatttttaacgaatacataacaaaaataaattaatttcaaatgactaattgggtgccgcttaaggctttttttttcctaagaagcaattaaaaattcaaaactaaaagtgtagtgtttatttcgacgagcaactactagtctcactcacagacgaagttaaaagaatatatgccttcggcaattgactaaaatactaaatatatgtcgtatcgttatcctctgggtctatcTAATGAACT-ACACA-ATGACAATAAGCAAATCAACAATGACACCACAAA-T-A--AACCCT--CTCCTATTTAACTTCA---ACTTCG-GCAGAAG---TAGACTGAGT--GGCTAACTAA-CAATTCTGTCATTCTCCGACACAG-CCC-ACAACTACCGAA-CCT---AACCACCACGA----TGCCCTACTCTTAAGCGAAAGTCATATAGACACTATAAGTCATTATTTCT--AAGTCACCA-AGACA-CTGCTT-GTAAAGCCTAATCACATAGACACAGAACCTTGCCAAG------------------GCTG-AACAAT-TCTATTGCTTTCCGACACT------AT-CCTTAGACTTGCTTCGG-------C----T----T------CAC-ATTC---ACT--C
gi|15 : ttggaAA-AAGA---CAAA---ATAAACCCC--TCATAA-TTAGCATCA--TCTTTTG-GCAGTTG---TAGACAGAGT--GCCTAACT---------------TTTGCGACAAAG-CCT-TCAACGACCGA--CCTTATAGTCACCGCTA---TTTTATGAC-CT----CAGAAGCCACGCAGACACT-------ATTGC---TGCAAGTT-CCACAGACggggaatcaagt
gi|6 : ACCGAGT--GGATAGCTGAACAATTCTCTTGCTTTCCGACACAGTCCT-AAGACTATCact
gi|12 : tggatagtgatctaagaactaaacaacgacaataagcaaatcaacaagaagatcacaaatataaaccctttctaagctaacctctacctcggtagaagtagactgagtggttaactaacaattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaggaAGCTGAACAATTCTGTTGCTTTCCGACAAGG-TCctcacattcactcacagtgcagagtggacagagcaactggaaaattcagcgcagcggtatttataccatgttgccccaaattggttggttaatatattaactcctgattggtt
gi|10 : AGCTGAACAATTCTGTTGCTTTCCGACActtagacttgctctggcttcacattctctcacagaacagagtaaattgaaaaggttagcgcggcggtatttataccccgttgttccgagttgattggttaatgcattacatgtaactcctgattagttagaaaagctgtaatctgatttgctaatgatggaaggcatttcaatccacccttt
gi|11 : ACACAATACTTTGTAGGGGCAGACAGAGTT--GCAAACT--AACAATATCT---GCT--CCGACA--------GT-CCTTAGACTTG----CT-------C----C----TGCTT--TAA-ATTC----CT--CACGGAATTAAGTGAAC----TA--TGGAAAAGACAGA--GT-GCAG---TATCT---CCATTCTGC--------------------------C---AGTTGGTTGGCTAATA---CA------ACTTCTG--A-TAGTTA-------AAAACCA--TAATTCAAAATGGGACTGAATGATTTGAAGCA------CTCAGTCCAC----TATATTCACtacatgtagtccttagacttgctccggcttcacattcagtcaggaaatcgagtgaacagggtaactgaaaaagtcagcgcggcggtatttacaccctgttgccccaggcgatatttatactctgttgacccaagtttattggctaatatattcattcctgattggttagaaatctgaaaagcagtaatctgactggttagtggttgaaggtacggtattctaatctttttcatcaca
gi|18 : catcaACAGA----CGCGAAGG--ATCTGAGTG--CCCAGCTG-A-CAAT-TCTGCAGCTTTCTGATACA------ATCCCTAACGTT------GT-------C----C----T------
gi|6 : CAAGG--AACCGAGTG--GATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CCTAAGACT------AT-------C----C----T------CAC-ATTC---ACT--CACAGTGCAGAGTGGACAGAGCAACTGGAAAATTCAGC--GCAGCGG---TATTTATACCATGTTGC--------------------------CCCAAATTGGTTGGTTAATATATTA------ACTCCTG--ATTGGTTgaataccgactc
gi|7 : tggatagtgatctaagaactaaacaacgacaataagcaaatcaacaagaagatcacaaatataaaccctttctaagctaacctctacctcggtagaagtagactgagtggttaactaacaattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTGAGTA--GCTAACT--AACAAT-TCTATTGTTCTCCGACACA------GC-CC-ACAACT------AC-------CGAACC----TAACCACCACGACTCCCTACT--CTTAA-ATAAAAGACACACAGTAACTGAAAAAGTCAGC--GCGGCGGCGGTATTTATACCCTGTTGT--------------------------CCCAAATTGATTGGCTAATACATTA------ACTTCTG--TTGGGTTA-------GAAAAGCAGTAA-TCTGATTGG--CT-AATAATTGAAGGC-----ATTTCAATCCACCTTTTTC-ATCACAATAACTCGTACAAGAAATGACTAAA
gi|8 : atcgttttcttcggtcatatctggataatgattcaagaactaaacaatgacgataagcaaatcaacaataagatcaaaaactaaaccctatcttaactaacctttacttcgcaagagtagACTGAGTA--GCTAACT--AACAAT-TCTATTGTTCTCCGACACA------GC-CC-ACAACT------AC-------CGAACC----TAACCACCACGACTCCCTACT--CTTAA-ATAAAAGACACACAGTAACTGAAAAAGTCAGCCGGCGGCGG---TATTTATACCCTGTTGT--------------------------CCCAAATTGATTGGCTAATACATTA------ACTTCTG--TTGGGTTA-------GAAAAGCAGTAA-TCTGATTGG--CT-AATAATTGAAGGC-----ATTTCAATCCAC----caatatagcctacaca
gi|5 : tatcgttttcttcggtcatatctggataatgattcaagaactaaacaatgacgataagcaaatcaacaataagatcaaaactaaaccctatcttaactaacctttactcgcaagagtagACTGAGTGCGGCTAACTA-AACAAT-TCTGT-GTTCTCCGACACA------GC-CGTATAACT------AT-------C----ctttttcatca
gi|12 : gaaggatttggtgcgatctgttaagcgttagatttgaatatttttaacgaatacataacaaaaataaattaatttcaaatgactaattgggtgccgcttaaggctttttttttcctaagaagcaattaaaaattcaaaactaaaagtgtagtgtttatttcgacgagcaactactagtctcactcacagacgaagttaaaagaatatatgccttcggcaattgactaaaatactaaatatatgtcgtatcgttatcctctgggtctatctgattcaagatctcaaacatacgacaatacgttaattagaataagatcacaaagaataaaccttcatcctagtctaacctctactgccacctagaagatatagAGCTG-AACAAT-TCTGTTGCTTTCCGACAAG------GT-CCTTAGACT-------TGCTCTGGC----T----T------CAC-ATTC---TCT--CACAGAACAGAGTA--------AATTGAAAAGGTTAGC--GCGGCGG---TATTTATACCCCGTTGT--------------------------TCCGAGTTGATTGGTTAATGCATTACATGTAACTCCTG--ATTAGTTA-------GAAAAGCTGTAA-TCTGATTTG--CT-AATGATGGAAGGC-----ATTTCAATCCAC----gaatcctaaccaccacgatttc
gi|10 : AGCTG-AACAAT-TCTGTTGCTTTCCGACATACATGTAGT-CCTTAGACTTG----CT-------C----CGGCTT------CAC-ATTC---AGT--CAGGAAATCGAGTGAACAGGGTAACTGAAAAAGTCAGC--GCGGCGG---TATTTACACCCTGTTGCCCCAGGCGATATTTATACTCTGTTGACCCAAGTTTATTGGCTAATATATTC------ATTCCTG--ATTGGTTAGAAATCTGAAAAGCAGTAA-TCTGACTGG--TT-AGTGGTTGAAGGTACGGTATTCTAATCTTT----TTC-ATCACA-----ccttt
gi|14 : -------C----T----T------CAC-GTTC---ACT--CACAGAACAGAGTGAACAGAGTAACTGAAACATT-AGC--ACGGCGG---TATTTATACCCTGTTGC--------------------------CCCAAGTTGATTGGTCAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TTTGATTGG--TT-AATGATTGAAGGC-----ATTTCAATCCAC----
gi|21 : gg-------C----T----T------CAC-ATTC---ACT--CACAGAGCAGAGTGAAccttttc
gi|19 : gacttgctccagCGGCGG---TATTTATACCCTGTTAC--------------------------CCAAAGTTGATTGGCTAATACATTATT----ACTCCTGGCATT--TCA-------AAAAGG
gi|16 : TGTTGC--------------------------CCCAAGTTGATTGGTTAATATACCA------ACTCCTG--ATTGGTTA-------GAAAATCTGTAA-T--------------ATGATTGACGGC-----ATTTCAATCCACCCTTTTC-ATCACA-----TT-Tccttt
gi|20 : ccGCTGATACATTT------ACTCCTG--ATTGGTTA-------GAATTACCGTAC-TCCAATTGG--CT-AATGAtc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): GAAGAGATTTGGTGACGATCTGTTTAAGCTAGGATTTGAAGTATTTGTAACGAACTACATAACAAAAAAAATAATTTCAAATACTAATTGGGTCCGCTTAGGTTTCTTCCTAAGAATCAATTTAAATCAAAATAAAAGTTAGTGTTTATTTCGACAGCAACTACTAGTCTCACTCACA
Unaligned ( gi|17 ): AAGAGATTTGGTGACGATCTGTTTAAGCTAAGATTCGAAGTATTTGTAACGAACTACATACTCAAAAAATTCATTTCAAATACTAATTGGGTCCGCTTAGGT
Alignments
lowQualScore : 2 1111 1111111 1 2222 2222222 222 11 5555555555555555555555555 111 2222222222222222 1111111111 1111111 22222 3333 11111 11 11
lowQualScore : 4 4 4 0000 555 1 3333333 1 777 777 55 0 3 0 1 0 99 4 777 6666 5 1111111 000 6 11 0 66 5 55 3 2 999999 3 1 7777777777777777777777777 6 000 3 44 6 1 55 555 0000000000000000 3333333333 888888 33 33 0000000 3 44 3 33333 0000 1 55 44444 6 11 11 2 2
lowQualScore : . . . .... ... . ....... . ... ... .. . . . . . .. . ... .... . ....... ... . .. . .. . .. . . ...... . . ......................... . ... . .. . . .. ... ................ .......... ...... .. .. ....... . .. . ..... .... . .. ..... . .. .. . .
lowQualScore : 4 4 0 1111 888 0 4444444 4 000 000 55 8 0 1 9 7 11 4 888 0000 9 7777777 888 7 66 8 99 0 88 3 3 666666 3 8 0000000000000000000000000 2 888 1 66 7 0 00 888 4444444444444444 5555555555 222222 99 99 0000000 3 66 3 22222 9999 0 44 33333 7 00 00 5 5
consensus : GATAGTGATCCAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAANCTAACCTCT-----TACCTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAAACAATTCTGTTGTTCTCCGACACGGCC-CACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACTAT-------TATT---AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACA------GT-CCTAAGACTTG----ATC----C----T------CAC-ATTC---ACT-CACAGA--GCAGAGTGA-ACAGAGTAACTGGAAAATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACAT------TA--ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCACC---TNC-ATCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
Reference ( family-2039 ) : GATAGTGATCCAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAANCTAACCTCT-----TACCTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAAACAATTCTGTTGTTCTCCGACACGGCC-CACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTNAAGCAAAAGTCACACAGACACTAT-------TATT---AAGTCACCA-AGACNTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGCTAGCTG-AACAAT-TCTGTTGCTTTCCGACACA------GT-CCTAAGACT------ATC----C----T------CAC-ATTC---ACT-CACAGA--GCAGAGTGA-ACAGAGTAACTGAAAAANTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACAT------TA--ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCAC----TNC-NTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|1 : ATAGTGATCTAAGAACT-AAACA-ACGACAAATAGCAAATCAACAAGAAGATCACAAAATA-TAAACCCT--TTCTAAGCTAACCTCT-----TACCTCGCGTAGAAG---TAGACTGAGTG--GTTAAC-AAACAATTGTGTTGTTCTCCGACACGGCC--ACAACTACCGAA-CCT---AACCA--ACGACGATTTCCCTACTCTGAAGCAAAAGTCACACAGACACTAT-------TATT---AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTGAAACAAT-TCTCTTGCTTTCCGACACA------GT-CCTAAGACT------ATC----C----TG-----CAC-ATTC---ACT-CACACAGTGCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTG-CCCAA----------------ATTG----------GTTGGTTAATATAT------TA--ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCAC----TAC-CTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|10 : AGCTG-AACAAT-TCTGTTGCTTTCCGACATACATGTAGT-CCTTAGACTTG----CTC----CGGCTT------CAC-ATTC---AGT-CAGGAA--ATCGAGTGA-ACAGGGTAACTGAAAAAGTCAGC--GCGG---CGGTATTTACACCCTGTTGCCCCAGGCGATATTTATACTCTGTTGACCCAAGTTTATTGGCTAATATAT------TC--ATTCCTG--ATTGGTTAGAAATCTGAAAAGCAGTAA-TCTGACTGG--TT-AGTGGTTGAAGGTACGGTATTCTAATCTTT----TTC-ATCACA-----aa
gi|11 : ACACAATACTTTGTAGGGGCAGACAGAGTTGCAAACT--AACAATATCTGCT-----CCGACA--------GT-CCTTAGACTTG----CTC----C----TGCTT--TAA-ATTC----CT-CACGGA--ATTAAGTGA-AC----TA--TGGAAAAGACAGA--GTG----CAGTATCT---CCATTCTGCC---A----------------GTTG----------GTTGGCTAATAC---------A--ACTTCTG--A-TAGTT---------AAAAACCATAATTCAAAATGGGACTGAATGATTTGAAGCA------CTCAGTCCAC----TATATTCAC
gi|12 : catcaAGCTG-AACAAT-TCTGTTGCTTTCCGACAAG------GT-CCTTAGACTTGCTCTGGC----T----T------CAC-ATTC---TCT-CACAGA--ACAGAGTAA-AT--------TGAAAAGGTTAGC--GCGG---CGGTATTTATACCCCGTTGTTCCGA----------------GTTG----------ATTGGTTAATGCATTACATGTA--ACTCCTG--ATTAGTTA-------GAAAAGCTGTAA-TCTGATTTG--CT-AATGATGGAAGGC-----ATTTCAATCCAC----
gi|14 : C----T----T------CAC-GTTC---ACT-CACAGA--ACAGAGTGA-ACAGAGTAACTGAAACATT-AGC--ACGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGTCAATATAT------TA--ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TTTGATTGG--TT-AATGATTGAAGGC-----ATTTCAATCCAC----ccttt
gi|15 : ggAA-AAGA---CAAA--A-TAAACCCC--TCATAAT-TAGCATCA-----TCTTTTG-GCAGTTG---TAGACAGAGTG--CCTAACT-------TTTG--------CGACAAAGCC-TTCAACGACCGA--CCTTATAGTCACCGCTA---TTTTATGAC-CT----CAGAAGCCACGCAGACACTAT-------TGCTGC-AAGTT-CCACAGACccttttc
gi|16 : CCTGTTGCCCCAA----------------GTTG----------ATTGGTTAATATAC------CA--ACTCCTG--ATTGGTTA-------GAAAATCTGTAA-T--------------ATGATTGACGGC-----ATTTCAATCCACCCTTTTC-ATCACA-----TT-Tact
gi|18 : ACAGA----CGCGAAGG--ATCTGAGTGCCCAGCTG-A-CAAT-TCTGCAGCTTTCTGATACA------ATCCCTAACGTT------GTC----C----T------tc
gi|19 : CGG---CGGTATTTATACCCTGTTACCCAAA----------------GTTG----------ATTGGCTAATACAT------TATTACTCCTGGCATT--TCA-------AAAAGGCgaataccgactc
gi|2 : GATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTCT-----TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACTAAACAATTGTGTTGTTCTCCGACACGGCC-AACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACTAT-------TATT---AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CCTAAGACT------ATC----C----T------CAC-ATTC---ACTACACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATAT------TA--ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCAC----TAC-CTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTTcttt
gi|20 : GCTGATACAT------TT--ACTCCTG--ATTGGTTA-------GAATTACCGTAC-TCCAATTGG--CT-AATGA
gi|21 : C----T----T------CAC-ATTC---ACT-CACAGA--GCAGAGTGA-Aatccacctttttacattaa
gi|3 : gacttgctccagGATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTCT-----TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACTAAACAATTGTGTTGTTCTCCGACACGGCC-AACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACTAT-------TATT---AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CCTAAGACT------ATC----C----T------CAC-ATTC---ACT-CACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATAT------TA--ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCAC----TAC-CTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|4 : GATAATGATTCAAGAACT-AAACA-ATGACAATAAGCAAACCAACAAGAAGATCACAAA-TA-TAAATCCT--ATCTAATCTAACCTCT------ACTTCG-GTAGAAG---TAGACCGAGTG--GCTAACTAA-CAATTCTGTTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCAACACGA----TTCCCTACTCTGAAGCAAAAGTCACACAGACACTTT-------TGCT---AAGTCACCA-AGACA-CTAAT-CGTAAAGCCTGGTCACACAGACACAGAACCTTGTCAAGA--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACG------GT-CCTTAGACTTGC---ACCGGC-T----T------CAC-ATTC---ACT-CACAGA--GCAGGGTGA-ACAGAGTAAGTGAGAGATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACAT------TA--ACTCATG--ATTGGTAA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATG--------------ATTTCAATCCACCCTTTTC-ATCACA-----CA-TA-GAGACA--TTTCCAAACT-TA---TGGTGTATAAATT
gi|5 : TGATTCAAGATCTCAAACATACGACAATACGTTAATTAGAAT-AAGATCACAAA-GAATAAACCTTCATCCTAGTCTAACCTCTACTGCCACCT-----AGAAGATATAGACTGAGTGCGGCTAACTAAACAATTCTG-TGTTCTCCGACACAGCCGTATAACTATCGAATCCT---AACCACCACG---ATTTCa
gi|6 : gaaggatttggtgcgatctgttaagcgttagatttgaatatttttaacgaatacataacaaaaataaattaatttcaaatgactaattgggtgccgcttaaggctttttttttcctaagaagcaattaaaaattcaaaactaaaagtgtagtgtttatttcgacgagcaactactagtctcactcacagacgaagttaaaagaatatatgccttcggcaattgactaaaatactaaatatatgtcgtatcgttatcctctgggtctatcGATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAAGAAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTC------TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACT-AACAATT
gi|6 : tgCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CCTAAGACT------ATC----C----T------CAC-ATTC---ACT-CACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATAT------TA--ACTCCTG--ATTGGTTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaggaaccgagtggatagctgaacaattctcttgctttccgacacagtcctaagactatcctcacattcactcacagtgcagagtggacagagcaactggaaaattcagcgcagcggtatttataccatgttgccccaaattggttggttaatatattaactcctgattggtt
gi|7 : tggatagtgatctaagaactaaacaacgacaataagcaaatcaacaagaagatcacaaatataaaccctttctaagctaacctctacctcggtagaagtagactgagtggttaactaacaattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGATAATGATTCAAGAACT-AAACA-ATGACGATAAGCAAATCAACAATAAGATCAAAAA-C--TAAACCCT--ATCTTAACTAACCT-T-----TACTTCG--CAAGAG---TAGACTGAGTA--GCTAACTAA-CAATTCTATTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCACCACGA----CTCCCTACTCTTAAATAAAAGACACACAG
gi|7 : atcgttttcttcggtcatatctgACTGAGTAGCTAACT--AACAAT-TCTATTGTTCTCCGACACA------GC-CC-ACAACT------ACCGAACC----TAACCACCACGACTCCCTACT-CTTAAA--TAAAAG--ACACACAGTAACTGAAAAAGTCAGC--GCGGCGGCGGTATTTATACCCTGTTGTCCCAA----------------ATTG----------ATTGGCTAATACAT------TA--ACTTCTG--TTGGGTTA-------GAAAAGCAGTAA-TCTGATTGG--CT-AATAATTGAAGGC-----ATTTCAATCCACCTTTTTC-ATCACAATAACTCGTACAAGAAATGACT--AAAtaactgaaaaagtcagcgcggcggcggtatttataccctgttgtcccaaattgattggctaatacattaacttctgttgggttagaaaagcagtaatctgattggctaataattgaaggcatttcaatccacctttttcatcacaataactcgtacaagaaatgactaaacaatatagcctacaca
gi|8 : atcgttttcttcggtcatatctggataatgattcaagaactaaacaatgacgataagcaaatcaacaataagatcaaaaactaaaccctatcttaactaacctttacttcgcaagagtagGATAATGATTCAAGAACT-AAACA-ATGACGATAAGCAAATCAACAATAAGATCA-AAA-C--TAAACCCT--ATCTTAACTAACCT-T-----TAC-TCG--CAAGAG---TAGACTGAGTA--GCTAACTAA-CAATTCTATTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCACCACGA----CTCCCTACTCTTAAATAAAAGACACACAGcaatatagcctacaca
gi|8 : tatcgttttcttcggtcatatctgACTGAGTAGCTAACT--AACAAT-TCTATTGTTCTCCGACACA------GC-CC-ACAACT------ACCGAACC----TAACCACCACGACTCCCTACT-CTTAAA--TAAAAG--ACACACAGTAACTGAAAAAGTCAGCCGGCGG---CGGTATTTATACCCTGTTGTCCCAA----------------ATTG----------ATTGGCTAATACAT------TA--ACTTCTG--TTGGGTTA-------GAAAAGCAGTAA-TCTGATTGG--CT-AATAATTGAAGGC-----ATTTCAATCCACCTTTTTC-ATCAtaactgaaaaagtcagccggcggcggtatttataccctgttgtcccaaattgattggctaatacattaacttctgttgggttagaaaagcagtaatctgattggctaataattgaaggcatttcaatccacctttttcatca
gi|9 : tatcgttttcttcggtcatatctggataatgattcaagaactaaacaatgacgataagcaaatcaacaataagatcaaaactaaaccctatcttaactaacctttactcgcaagagtagGAACT-ACACA-ATGACAATAAGCAAATCAACAATGACACCACAAA-TA---AACCCT--CTCCTATTTAACTTCA------ACTTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAA-CAATTCTGTCATTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCACCACGA----TGCCCTACTCTTAAGCGAAAGTCATATAGACACTATAAGTCATTATTTCTAAGTCACCA-AGACA-CTGCTT-GTAAAGCCTAATCACATAGACACAGAACCTTGCCAAGG----------------CTG-AACAAT-TCTATTGCTTTCCGACACT------AT-CCTTAGACTTGCTTCGGC----T----T------CAC-ATTC---ACT-C
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GAAGAGATTTGGTGACGATCTGTTTAAGCTAGGATTTGAAGTATTTGTAACGAACTACATAACAAAAAAAATAATTTCAAATACTAATTGGGTCCGCTTAGGTTTCTTCCTAAGAATCAATTTAAATCAAAATAAAAGTTAGTGTTTATTTCGACAGCAACTACTAGTCTCACTCACA
Unaligned ( gi|17 ): AAGAGATTTGGTGACGATCTGTTTAAGCTAAGATTCGAAGTATTTGTAACGAACTACATACTCAAAAAATTCATTTCAAATACTAATTGGGTCCGCTTAGGT
Alignments
lowQualScore : 2 1111 1111111 1 2222 2222222 111111 1 111111111 3333333333333333333 111 2222222222222222 1111111111 111111 1111111 22222 222 11111 11 11
lowQualScore : 4 4 4 0000 555 1 3333333 1 777 777 55 0 3 0 1 0 99 4 777 6666 5 1111111 111111 6 0 0 66 3 55 3 2 999999 3 888888888 0000000000000000000 6 000 3 44 6 1 55 555 0000000000000000 3333333333 222222 33 0000000 3 44 3 33333 5 888 1 44444 6 11 11 2 2
lowQualScore : . . . .... ... . ....... . ... ... .. . . . . . .. . ... .... . ....... ...... . . . .. . .. . . ...... . ......... ................... . ... . .. . . .. ... ................ .......... ...... .. ....... . .. . ..... . ... . ..... . .. .. . .
lowQualScore : 4 4 0 1111 888 0 4444444 4 000 000 55 8 0 1 9 7 11 4 888 0000 6 7777777 888888 7 6 8 99 0 88 3 3 666666 3 777777777 2222222222222222222 2 888 1 66 7 9 00 888 4444444444444444 5555555555 111111 99 0000000 3 66 3 22222 1 000 0 33333 7 00 00 5 5
consensus : GATAGTGATCCAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAANCTAACCTCT-----TACCTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAAACAATTCTGTTGTTCTCCGACACGGCC-CACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACA------GT-CC-----TA--AGACTTGNT----CC----T----CAC-ATTC---ACT-CACAGA--GCAGAGTGA-ACAGAGTAACTGGAAAATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCACC-TTTTCATCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
Reference ( family-2039 ) : GATAGTGATCCAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAANCTAACCTCT-----TACCTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAAACAATTCTGTTGTTCTCCGACACGGCC-CACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACA------GT-CC-----TA--AGACTTGAT----CC----T----CAC-ATTC---ACT-CACAGA--GCAGAGTGA-ACAGAGTAACTGGAAAATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCACC---TNCATCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|1 : ATAGTGATCTAAGAACT-AAACA-ACGACAAATAGCAAATCAACAAGAAGATCACAAAATA-TAAACCCT--TTCTAAGCTAACCTCT-----TACCTCGCGTAGAAG---TAGACTGAGTG--GTTAAC-AAACAATTGTGTTGTTCTCCGACACGGCC--ACAACTACCGAA-CCT---AACCA--ACGACGATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTGAAACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----TG---CAC-ATTC---ACT-CACACAGTGCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTG-CCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-C---TACCTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|10 : AGCTG-AACAAT-TCTGTTGCTTTCCGACATACATGTAGT-CC-----TT--AGACTTGCT----CCGGCTT----CAC-ATTC---AGT-CAGGAA--ATCGAGTGA-ACAGGGTAACTGAAAAAGTCAGC--GCGG---CGGTATTTACACCCTGTTGCCCCAGGCGATATTTATACTCTGTTGACCCAAGTTTATTGGCTAATATATTC------ATTCCTG--ATTGGTTAGAAATCTGAAAAGCAGTAA-TCTGACTGG--TT-AGTGGTTGAAGGTACGGTATTCTAATCT-TT---TTCATCACA-----aa
gi|11 : ACACAATACTTTGTAGGGGCAGACAGAGTTGCAAACT--AACAATATCTGCT-----CCGACA--------GT-CC-----TT--AGACTTGCT----CC----TGCTTTAA-ATTC----CT-CACGGA--ATTAAGTGA-AC----TA--TGGAAAAGACAGA--GTG----CAGTATCT---CCATTCTGCC---A----------------GTTG----------GTTGGCTAATAC---A------ACTTCTG--A-TAGTT---------AAAAACCATAATTCAAAATGGGACTGAATGATTTGAAGCA------CTCAGTCCAC
gi|12 : catcaAGCTG-AACAAT-TCTGTTGCTTTCCGACAAG------GT-CC-----TT--AGACTTGCT----CTGGCTT----CAC-ATTC---TCT-CACAGA--ACAGAGTAA-AT--------TGAAAAGGTTAGC--GCGG---CGGTATTTATACCCCGTTGTTCCGA----------------GTTG----------ATTGGTTAATGCATTACATGTAACTCCTG--ATTAGTTA-------GAAAAGCTGTAA-TCTGATTTG--CT-AATGATGGAAGGC-----ATTTCAATCCACC---tatattcac
gi|14 : ----CT----T----CAC-GTTC---ACT-CACAGA--ACAGAGTGA-ACAGAGTAACTGAAACATT-AGC--ACGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGTCAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TTTGATTGG--TT-AATGATTGAAGGC-----ATTTCAATCCACC---cttt
gi|15 : ggAA-AAGA---CAAA--A-TAAACCCC--TCATAAT-TAGCATCA-----TCTTTTG-GCAGTTG---TAGACAGAGTG--CCTAACT-------TTTG--------CGACAAAGCC-TTCAACGACCGA--CCTTATAGTCACCGCTA---TTTTATGAC-CT----CAGAAGCCACGCAGACACT-------ATTGC---TGCAAGTT-CCACAGACcttttc
gi|16 : CCTGTTGCCCCAA----------------GTTG----------ATTGGTTAATATACCA------ACTCCTG--ATTGGTTA-------GAAAATCTGTAA-T--------------ATGATTGACGGC-----ATTTCAATCCACCCTTTTCATCACA-----TT-Tact
gi|18 : ACAGA----CGCGAAGG--ATCTGAGTGCCCAGCTG-A-CAAT-TCTGCAGCTTTCTGATACA------ATCCC-----TA--Atc
gi|19 : CGG---CGGTATTTATACCCTGTTACCCAAA----------------GTTG----------ATTGGCTAATACATTATT----ACTCCTGGCATT--TCA-------AAAAGGCcgttgtcctgaataccgactc
gi|2 : GATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTCT-----TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACTAAACAATTGTGTTGTTCTCCGACACGGCC-AACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----T----CAC-ATTC---ACTACACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-C---TACCTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTTcttt
gi|20 : GCTGATACATTT------ACTCCTG--ATTGGTTA-------GAATTACCGTAC-TCCAATTGG--CT-AATGA
gi|21 : GACTTGCT----CCAGCTT----CAC-ATTC---ACT-CACAGA--GCAGAGTGA-Aatccacctttttacattaa
gi|3 : GATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTCT-----TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACTAAACAATTGTGTTGTTCTCCGACACGGCC-AACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----T----CAC-ATTC---ACT-CACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-C---TACCTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|4 : GATAATGATTCAAGAACT-AAACA-ATGACAATAAGCAAACCAACAAGAAGATCACAAA-TA-TAAATCCT--ATCTAATCTAACCTCT------ACTTCG-GTAGAAG---TAGACCGAGTG--GCTAACTAA-CAATTCTGTTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCAACACGA----TTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------TTTGC---T--AAGTCACCA-AGACA-CTAAT-CGTAAAGCCTGGTCACACAGACACAGAACCTTGTCAAGA--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACG------GT-CC-----TT--AGACTTGCA----CCGGCTT----CAC-ATTC---ACT-CACAGA--GCAGGGTGA-ACAGAGTAAGTGAGAGATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCATG--ATTGGTAA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATG--------------ATTTCAATCCACCCTTTTCATCACA-----CA-TA-GAGACA--TTTCCAAACT-TA---TGGTGTATAAATT
gi|5 : TGATTCAAGATCTCAAACATACGACAATACGTTAATTAGAAT-AAGATCACAAA-GAATAAACCTTCATCCTAGTCTAACCTCTACTGCCACCT-----AGAAGATATAGACTGAGTGCGGCTAACTAAACAATTCTG-TGTTCTCCGACACAGCCGTATAACTATCGAATCCT---AACCACCACG---ATTTCa
gi|6 : gaaggatttggtgcgatctgttaagcgttagatttgaatatttttaacgaatacataacaaaaataaattaatttcaaatgactaattgggtgccgcttaaggctttttttttcctaagaagcaattaaaaattcaaaactaaaagtgtagtgtttatttcgacgagcaactactagtctcactcacagacgaagttaaaagaatatatgccttcggcaattgactaaaatactaaatatatgtcgtatcgttatcctctgggtctatcGATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAAGAAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTC------TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACT-AACAATT
gi|6 : tgCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----T----CAC-ATTC---ACT-CACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaggaaccgagtggatagctgaacaattctcttgctttccgacacagtcctaagactatcctcacattcactcacagtgcagagtggacagagcaactggaaaattcagcgcagcggtatttataccatgttgccccaaattggttggttaatatattaactcctgattggtt
gi|7 : tggatagtgatctaagaactaaacaacgacaataagcaaatcaacaagaagatcacaaatataaaccctttctaagctaacctctacctcggtagaagtagactgagtggttaactaacaattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGATAATGATTCAAGAACT-AAACA-ATGACGATAAGCAAATCAACAATAAGATCAAAAA-C--TAAACCCT--ATCTTAACTAACCT-T-----TACTTCG--CAAGAG---TAGACTGAGTA--GCTAACTAA-CAATTCTATTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCACCACGA----CTCCCTACTCTTAAATAAAAGACACACAG
gi|7 : atcgttttcttcggtcatatctgACTGAGTAGCTAACT--AACAAT-TCTATTGTTCTCCGACACA------GC-CCACAACTACCGAACCTAAC----CA----C----CACGACTCCCTACT-CTTAAA--TAAAAG--ACACACAGTAACTGAAAAAGTCAGC--GCGGCGGCGGTATTTATACCCTGTTGTCCCAA----------------ATTG----------ATTGGCTAATACATTA------ACTTCTG--TTGGGTTA-------GAAAAGCAGTAA-TCTGATTGG--CT-AATAATTGAAGGC-----ATTTCAATCCACCTTTTTCATCACAATAACTCGTACAAGAAATGACT--AAAtaactgaaaaagtcagcgcggcggcggtatttataccctgttgtcccaaattgattggctaatacattaacttctgttgggttagaaaagcagtaatctgattggctaataattgaaggcatttcaatccacctttttcatcacaataactcgtacaagaaatgactaaacaatatagcctacaca
gi|8 : atcgttttcttcggtcatatctggataatgattcaagaactaaacaatgacgataagcaaatcaacaataagatcaaaaactaaaccctatcttaactaacctttacttcgcaagagtagGATAATGATTCAAGAACT-AAACA-ATGACGATAAGCAAATCAACAATAAGATCA-AAA-C--TAAACCCT--ATCTTAACTAACCT-T-----TAC-TCG--CAAGAG---TAGACTGAGTA--GCTAACTAA-CAATTCTATTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCACCACGA----CTCCCTACTCTTAAATAAAAGACACACAGcaatatagcctacaca
gi|8 : tatcgttttcttcggtcatatctgACTGAGTAGCTAACT--AACAAT-TCTATTGTTCTCCGACACA------GC-CCACAACTACCGAACCTAAC----CA----C----CACGACTCCCTACT-CTTAAA--TAAAAG--ACACACAGTAACTGAAAAAGTCAGCCGGCGG---CGGTATTTATACCCTGTTGTCCCAA----------------ATTG----------ATTGGCTAATACATTA------ACTTCTG--TTGGGTTA-------GAAAAGCAGTAA-TCTGATTGG--CT-AATAATTGAAGGC-----ATTTCAATCCACCTTTTTCATCAtaactgaaaaagtcagccggcggcggtatttataccctgttgtcccaaattgattggctaatacattaacttctgttgggttagaaaagcagtaatctgattggctaataattgaaggcatttcaatccacctttttcatca
gi|9 : tatcgttttcttcggtcatatctggataatgattcaagaactaaacaatgacgataagcaaatcaacaataagatcaaaactaaaccctatcttaactaacctttactcgcaagagtagGAACT-ACACA-ATGACAATAAGCAAATCAACAATGACACCACAAA-TA---AACCCT--CTCCTATTTAACTTCA------ACTTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAA-CAATTCTGTCATTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCACCACGA----TGCCCTACTCTTAAGCGAAAGTCATATAGACACTATAAGTCATTATTTCT--AAGTCACCA-AGACA-CTGCTT-GTAAAGCCTAATCACATAGACACAGAACCTTGCCAAG----------------GCTG-AACAAT-TCTATTGCTTTCCGACACT------AT-CC-----TT--AGACTTGCTTCGGCT----T----CAC-ATTC---ACT-C
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GAAGAGATTTGGTGACGATCTGTTTAAGCTAGGATTTGAAGTATTTGTAACGAACTACATAACAAAAAAAATAATTTCAAATACTAATTGGGTCCGCTTAGGTTTCTTCCTAAGAATCAATTTAAATCAAAATAAAAGTTAGTGTTTATTTCGACAGCAACTACTAGTCTCACTCACA
Unaligned ( gi|17 ): AAGAGATTTGGTGACGATCTGTTTAAGCTAAGATTCGAAGTATTTGTAACGAACTACATACTCAAAAAATTCATTTCAAATACTAATTGGGTCCGCTTAGGT
Alignments
lowQualScore : 2 1111 1111111 1 2222 2222222 111111 1 111111111 11111111 222222222 111 2222222222222222 1111111111 111111 1111111 22222 111 11111 11 11
lowQualScore : 4 4 4 0000 555 1 3333333 1 777 777 55 0 3 0 1 0 99 4 777 6666 5 1111111 111111 6 0 0 66 3 55 3 2 999999 3 888888888 11111111 999999999 6 000 3 44 6 1 55 555 0000000000000000 3333333333 222222 33 0000000 3 44 3 0 22222 6 222 44444 6 11 11 2 2
lowQualScore : . . . .... ... . ....... . ... ... .. . . . . . .. . ... .... . ....... ...... . . . .. . .. . . ...... . ......... ........ ......... . ... . .. . . .. ... ................ .......... ...... .. ....... . .. . . ..... . ... ..... . .. .. . .
lowQualScore : 4 4 0 1111 888 0 4444444 4 000 000 55 8 0 1 9 7 11 4 888 0000 6 7777777 888888 7 6 8 99 0 88 3 3 666666 3 777777777 55555555 111111111 2 888 1 66 7 9 00 888 4444444444444444 5555555555 111111 99 0000000 3 66 3 4 55555 7 666 33333 7 00 00 5 5
consensus : GATAGTGATCCAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAANCTAACCTCT-----TACCTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAAACAATTCTGTTGTTCTCCGACACGGCC-CACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACA------GT-CC-----TA--AGACTTGNT----CC----T----CAC-ATTC---ACT-CACAGA--GCAGAGTGA-ACAGAGTAACTGGAAAATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-CC-TTTTCATCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
Reference ( family-2039 ) : GATAGTGATCCAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAANCTAACCTCT-----TACCTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAAACAATTCTGTTGTTCTCCGACACGGCC-CACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACA------GT-CC-----TA--AGACTTGNT----CC----T----CAC-ATTC---ACT-CACAGA--GCAGAGTGA-ACAGAGTAACTGGAAAATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-CC-TTTTCATCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|1 : ATAGTGATCTAAGAACT-AAACA-ACGACAAATAGCAAATCAACAAGAAGATCACAAAATA-TAAACCCT--TTCTAAGCTAACCTCT-----TACCTCGCGTAGAAG---TAGACTGAGTG--GTTAAC-AAACAATTGTGTTGTTCTCCGACACGGCC--ACAACTACCGAA-CCT---AACCA--ACGACGATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTGAAACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----TG---CAC-ATTC---ACT-CACACAGTGCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTG-CCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-C----TACCTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|10 : AGCTG-AACAAT-TCTGTTGCTTTCCGACATACATGTAGT-CC-----TT--AGACTTGCT----CCGGCTT----CAC-ATTC---AGT-CAGGAA--ATCGAGTGA-ACAGGGTAACTGAAAAAGTCAGC--GCGG---CGGTATTTACACCCTGTTGCCCCAGGCGATATTTATACTCTGTTGACCCAAGTTTATTGGCTAATATATTC------ATTCCTG--ATTGGTTAGAAATCTGAAAAGCAGTAA-TCTGACTGG--TT-AGTGGTTGAAGGTACGGTATTCTAAT----CT-TTTTCATCACA-----aa
gi|11 : ACACAATACTTTGTAGGGGCAGACAGAGTTGCAAACT--AACAATATCTGCT-----CCGACA--------GT-CC-----TT--AGACTTGCT----CC----TGCTTTAA-ATTC----CT-CACGGA--ATTAAGTGA-AC----TA--TGGAAAAGACAGA--GTG----CAGTATCT---CCATTCTGCC---A----------------GTTG----------GTTGGCTAATAC---A------ACTTCTG--A-TAGTT---------AAAAACCATAATTCAAAATGGGACTGAATGATTTGAAGCA------CTCAGTCCA-C
gi|12 : catcaAGCTG-AACAAT-TCTGTTGCTTTCCGACAAG------GT-CC-----TT--AGACTTGCT----CTGGCTT----CAC-ATTC---TCT-CACAGA--ACAGAGTAA-AT--------TGAAAAGGTTAGC--GCGG---CGGTATTTATACCCCGTTGTTCCGA----------------GTTG----------ATTGGTTAATGCATTACATGTAACTCCTG--ATTAGTTA-------GAAAAGCTGTAA-TCTGATTTG--CT-AATGATGGAAGGC-----ATTTCAATCCA-CC-CTTTtatattcac
gi|14 : ----CT----T----CAC-GTTC---ACT-CACAGA--ACAGAGTGA-ACAGAGTAACTGAAACATT-AGC--ACGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGTCAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TTTGATTGG--TT-AATGATTGAAGGC-----ATTTCAATCCA-CC-CTTT
gi|15 : ggAA-AAGA---CAAA--A-TAAACCCC--TCATAAT-TAGCATCA-----TCTTTTG-GCAGTTG---TAGACAGAGTG--CCTAACT-------TTTG--------CGACAAAGCC-TTCAACGACCGA--CCTTATAGTCACCGCTA---TTTTATGAC-CT----CAGAAGCCACGCAGACACT-------ATTGC---TGCAAGTT-CCACAGACtc
gi|16 : CCTGTTGCCCCAA----------------GTTG----------ATTGGTTAATATACCA------ACTCCTG--ATTGGTTA-------GAAAATCTGTAA-T--------------ATGATTGACGGC-----ATTTCAATCCACCC-TTTTCATCACA-----TT-Tact
gi|18 : ACAGA----CGCGAAGG--ATCTGAGTGCCCAGCTG-A-CAAT-TCTGCAGCTTTCTGATACA------ATCCC-----TA--Atc
gi|19 : CGG---CGGTATTTATACCCTGTTACCCAAA----------------GTTG----------ATTGGCTAATACATTATT----ACTCCTGGCATT--TCA-------AAAAGGCcgttgtcctgaataccgactc
gi|2 : GATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTCT-----TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACTAAACAATTGTGTTGTTCTCCGACACGGCC-AACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----T----CAC-ATTC---ACTACACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-C----TACCTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTTcttt
gi|20 : GCTGATACATTT------ACTCCTG--ATTGGTTA-------GAATTACCGTAC-TCCAATTGG--CT-AATG-------------------AATCCA-CC-TTTTTA
gi|21 : GACTTGCT----CCAGCTT----CAC-ATTC---ACT-CACAGA--GCAGAGTGA-Acattaa
gi|3 : GATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTCT-----TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACTAAACAATTGTGTTGTTCTCCGACACGGCC-AACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----T----CAC-ATTC---ACT-CACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-C----TACCTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|4 : GATAATGATTCAAGAACT-AAACA-ATGACAATAAGCAAACCAACAAGAAGATCACAAA-TA-TAAATCCT--ATCTAATCTAACCTCT------ACTTCG-GTAGAAG---TAGACCGAGTG--GCTAACTAA-CAATTCTGTTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCAACACGA----TTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------TTTGC---T--AAGTCACCA-AGACA-CTAAT-CGTAAAGCCTGGTCACACAGACACAGAACCTTGTCAAGA--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACG------GT-CC-----TT--AGACTTGCA----CCGGCTT----CAC-ATTC---ACT-CACAGA--GCAGGGTGA-ACAGAGTAAGTGAGAGATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCATG--ATTGGTAA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATG--------------ATTTCAATCCACCC-TTTTCATCACA-----CA-TA-GAGACA--TTTCCAAACT-TA---TGGTGTATAAATT
gi|5 : TGATTCAAGATCTCAAACATACGACAATACGTTAATTAGAAT-AAGATCACAAA-GAATAAACCTTCATCCTAGTCTAACCTCTACTGCCACCT-----AGAAGATATAGACTGAGTGCGGCTAACTAAACAATTCTG-TGTTCTCCGACACAGCCGTATAACTATCGAATCCT---AACCACCACG---ATTTCa
gi|6 : gaaggatttggtgcgatctgttaagcgttagatttgaatatttttaacgaatacataacaaaaataaattaatttcaaatgactaattgggtgccgcttaaggctttttttttcctaagaagcaattaaaaattcaaaactaaaagtgtagtgtttatttcgacgagcaactactagtctcactcacagacgaagttaaaagaatatatgccttcggcaattgactaaaatactaaatatatgtcgtatcgttatcctctgggtctatcGATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAAGAAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTC------TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACT-AACAATT
gi|6 : tgCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----T----CAC-ATTC---ACT-CACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaggaaccgagtggatagctgaacaattctcttgctttccgacacagtcctaagactatcctcacattcactcacagtgcagagtggacagagcaactggaaaattcagcgcagcggtatttataccatgttgccccaaattggttggttaatatattaactcctgattggtt
gi|7 : tggatagtgatctaagaactaaacaacgacaataagcaaatcaacaagaagatcacaaatataaaccctttctaagctaacctctacctcggtagaagtagactgagtggttaactaacaattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGATAATGATTCAAGAACT-AAACA-ATGACGATAAGCAAATCAACAATAAGATCAAAAA-C--TAAACCCT--ATCTTAACTAACCT-T-----TACTTCG--CAAGAG---TAGACTGAGTA--GCTAACTAA-CAATTCTATTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCACCACGA----CTCCCTACTCTTAAATAAAAGACACACAG
gi|7 : atcgttttcttcggtcatatctgACTGAGTAGCTAACT--AACAAT-TCTATTGTTCTCCGACACA------GC-CCACAACTACCGAACCTAAC----CA----C----CACGACTCCCTACT-CTTAAA--TAAAAG--ACACACAGTAACTGAAAAAGTCAGC--GCGGCGGCGGTATTTATACCCTGTTGTCCCAA----------------ATTG----------ATTGGCTAATACATTA------ACTTCTG--TTGGGTTA-------GAAAAGCAGTAA-TCTGATTGG--CT-AATAATTGAAGGC-----ATTTCAATCCA-CCTTTTTCATCACAATAACTCGTACAAGAAATGACT--AAAtaactgaaaaagtcagcgcggcggcggtatttataccctgttgtcccaaattgattggctaatacattaacttctgttgggttagaaaagcagtaatctgattggctaataattgaaggcatttcaatccacctttttcatcacaataactcgtacaagaaatgactaaacaatatagcctacaca
gi|8 : atcgttttcttcggtcatatctggataatgattcaagaactaaacaatgacgataagcaaatcaacaataagatcaaaaactaaaccctatcttaactaacctttacttcgcaagagtagGATAATGATTCAAGAACT-AAACA-ATGACGATAAGCAAATCAACAATAAGATCA-AAA-C--TAAACCCT--ATCTTAACTAACCT-T-----TAC-TCG--CAAGAG---TAGACTGAGTA--GCTAACTAA-CAATTCTATTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCACCACGA----CTCCCTACTCTTAAATAAAAGACACACAGcaatatagcctacaca
gi|8 : tatcgttttcttcggtcatatctgACTGAGTAGCTAACT--AACAAT-TCTATTGTTCTCCGACACA------GC-CCACAACTACCGAACCTAAC----CA----C----CACGACTCCCTACT-CTTAAA--TAAAAG--ACACACAGTAACTGAAAAAGTCAGCCGGCGG---CGGTATTTATACCCTGTTGTCCCAA----------------ATTG----------ATTGGCTAATACATTA------ACTTCTG--TTGGGTTA-------GAAAAGCAGTAA-TCTGATTGG--CT-AATAATTGAAGGC-----ATTTCAATCCA-CCTTTTTCATCAtaactgaaaaagtcagccggcggcggtatttataccctgttgtcccaaattgattggctaatacattaacttctgttgggttagaaaagcagtaatctgattggctaataattgaaggcatttcaatccacctttttcatca
gi|9 : tatcgttttcttcggtcatatctggataatgattcaagaactaaacaatgacgataagcaaatcaacaataagatcaaaactaaaccctatcttaactaacctttactcgcaagagtagGAACT-ACACA-ATGACAATAAGCAAATCAACAATGACACCACAAA-TA---AACCCT--CTCCTATTTAACTTCA------ACTTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAA-CAATTCTGTCATTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCACCACGA----TGCCCTACTCTTAAGCGAAAGTCATATAGACACTATAAGTCATTATTTCT--AAGTCACCA-AGACA-CTGCTT-GTAAAGCCTAATCACATAGACACAGAACCTTGCCAAG----------------GCTG-AACAAT-TCTATTGCTTTCCGACACT------AT-CC-----TT--AGACTTGCTTCGGCT----T----CAC-ATTC---ACT-C
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GAAGAGATTTGGTGACGATCTGTTTAAGCTAGGATTTGAAGTATTTGTAACGAACTACATAACAAAAAAAATAATTTCAAATACTAATTGGGTCCGCTTAGGTTTCTTCCTAAGAATCAATTTAAATCAAAATAAAAGTTAGTGTTTATTTCGACAGCAACTACTAGTCTCACTCACA
Unaligned ( gi|17 ): AAGAGATTTGGTGACGATCTGTTTAAGCTAAGATTCGAAGTATTTGTAACGAACTACATACTCAAAAAATTCATTTCAAATACTAATTGGGTCCGCTTAGGT
Alignments
lowQualScore : 2 1111 1111111 1 2222 2222222 111111 1 111111111 11111111 222222222 111 2222222222222222 1111111111 111111 1111111 22222 111 11111 11 11
lowQualScore : 4 4 4 0000 555 1 3333333 1 777 777 55 0 3 0 1 0 99 4 777 6666 5 1111111 111111 6 0 0 66 3 55 3 2 999999 3 888888888 11111111 999999999 6 000 3 44 6 1 55 555 0000000000000000 3333333333 222222 33 0000000 3 44 3 0 22222 6 222 44444 6 11 11 2 2
lowQualScore : . . . .... ... . ....... . ... ... .. . . . . . .. . ... .... . ....... ...... . . . .. . .. . . ...... . ......... ........ ......... . ... . .. . . .. ... ................ .......... ...... .. ....... . .. . . ..... . ... ..... . .. .. . .
lowQualScore : 4 4 0 1111 888 0 4444444 4 000 000 55 8 0 1 9 7 11 4 888 0000 6 7777777 888888 7 6 8 99 0 88 3 3 666666 3 777777777 55555555 111111111 2 888 1 66 7 9 00 888 4444444444444444 5555555555 111111 99 0000000 3 66 3 4 55555 7 666 33333 7 00 00 5 5
consensus : GATAGTGATCCAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAANCTAACCTCT-----TACCTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAAACAATTCTGTTGTTCTCCGACACGGCC-CACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACA------GT-CC-----TA--AGACTTGNT----CC----T----CAC-ATTC---ACT-CACAGA--GCAGAGTGA-ACAGAGTAACTGGAAAATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-CC-TTTTCATCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
Reference ( family-2039 ) : GATAGTGATCCAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAANCTAACCTCT-----TACCTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAAACAATTCTGTTGTTCTCCGACACGGCC-CACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACA------GT-CC-----TA--AGACTTGNT----CC----T----CAC-ATTC---ACT-CACAGA--GCAGAGTGA-ACAGAGTAACTGGAAAATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-CC-TTTTCATCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|1 : ATAGTGATCTAAGAACT-AAACA-ACGACAAATAGCAAATCAACAAGAAGATCACAAAATA-TAAACCCT--TTCTAAGCTAACCTCT-----TACCTCGCGTAGAAG---TAGACTGAGTG--GTTAAC-AAACAATTGTGTTGTTCTCCGACACGGCC--ACAACTACCGAA-CCT---AACCA--ACGACGATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTGAAACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----TG---CAC-ATTC---ACT-CACACAGTGCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTG-CCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-C----TACCTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|10 : AGCTG-AACAAT-TCTGTTGCTTTCCGACATACATGTAGT-CC-----TT--AGACTTGCT----CCGGCTT----CAC-ATTC---AGT-CAGGAA--ATCGAGTGA-ACAGGGTAACTGAAAAAGTCAGC--GCGG---CGGTATTTACACCCTGTTGCCCCAGGCGATATTTATACTCTGTTGACCCAAGTTTATTGGCTAATATATTC------ATTCCTG--ATTGGTTAGAAATCTGAAAAGCAGTAA-TCTGACTGG--TT-AGTGGTTGAAGGTACGGTATTCTAAT----CT-TTTTCATCACA-----aa
gi|11 : ACACAATACTTTGTAGGGGCAGACAGAGTTGCAAACT--AACAATATCTGCT-----CCGACA--------GT-CC-----TT--AGACTTGCT----CC----TGCTTTAA-ATTC----CT-CACGGA--ATTAAGTGA-AC----TA--TGGAAAAGACAGA--GTG----CAGTATCT---CCATTCTGCC---A----------------GTTG----------GTTGGCTAATAC---A------ACTTCTG--A-TAGTT---------AAAAACCATAATTCAAAATGGGACTGAATGATTTGAAGCA------CTCAGTCCA-C
gi|12 : catcaAGCTG-AACAAT-TCTGTTGCTTTCCGACAAG------GT-CC-----TT--AGACTTGCT----CTGGCTT----CAC-ATTC---TCT-CACAGA--ACAGAGTAA-AT--------TGAAAAGGTTAGC--GCGG---CGGTATTTATACCCCGTTGTTCCGA----------------GTTG----------ATTGGTTAATGCATTACATGTAACTCCTG--ATTAGTTA-------GAAAAGCTGTAA-TCTGATTTG--CT-AATGATGGAAGGC-----ATTTCAATCCA-CC-CTTTtatattcac
gi|14 : ----CT----T----CAC-GTTC---ACT-CACAGA--ACAGAGTGA-ACAGAGTAACTGAAACATT-AGC--ACGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGTCAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TTTGATTGG--TT-AATGATTGAAGGC-----ATTTCAATCCA-CC-CTTT
gi|15 : ggAA-AAGA---CAAA--A-TAAACCCC--TCATAAT-TAGCATCA-----TCTTTTG-GCAGTTG---TAGACAGAGTG--CCTAACT-------TTTG--------CGACAAAGCC-TTCAACGACCGA--CCTTATAGTCACCGCTA---TTTTATGAC-CT----CAGAAGCCACGCAGACACT-------ATTGC---TGCAAGTT-CCACAGACtc
gi|16 : CCTGTTGCCCCAA----------------GTTG----------ATTGGTTAATATACCA------ACTCCTG--ATTGGTTA-------GAAAATCTGTAA-T--------------ATGATTGACGGC-----ATTTCAATCCACCC-TTTTCATCACA-----TT-Tact
gi|18 : ACAGA----CGCGAAGG--ATCTGAGTGCCCAGCTG-A-CAAT-TCTGCAGCTTTCTGATACA------ATCCC-----TA--Atc
gi|19 : CGG---CGGTATTTATACCCTGTTACCCAAA----------------GTTG----------ATTGGCTAATACATTATT----ACTCCTGGCATT--TCA-------AAAAGGCcgttgtcctgaataccgactc
gi|2 : GATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTCT-----TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACTAAACAATTGTGTTGTTCTCCGACACGGCC-AACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----T----CAC-ATTC---ACTACACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-C----TACCTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTTcttt
gi|20 : GCTGATACATTT------ACTCCTG--ATTGGTTA-------GAATTACCGTAC-TCCAATTGG--CT-AATG-------------------AATCCA-CC-TTTTTA
gi|21 : GACTTGCT----CCAGCTT----CAC-ATTC---ACT-CACAGA--GCAGAGTGA-Acattaa
gi|3 : GATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTCT-----TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACTAAACAATTGTGTTGTTCTCCGACACGGCC-AACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----T----CAC-ATTC---ACT-CACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-C----TACCTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|4 : GATAATGATTCAAGAACT-AAACA-ATGACAATAAGCAAACCAACAAGAAGATCACAAA-TA-TAAATCCT--ATCTAATCTAACCTCT------ACTTCG-GTAGAAG---TAGACCGAGTG--GCTAACTAA-CAATTCTGTTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCAACACGA----TTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------TTTGC---T--AAGTCACCA-AGACA-CTAAT-CGTAAAGCCTGGTCACACAGACACAGAACCTTGTCAAGA--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACG------GT-CC-----TT--AGACTTGCA----CCGGCTT----CAC-ATTC---ACT-CACAGA--GCAGGGTGA-ACAGAGTAAGTGAGAGATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCATG--ATTGGTAA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATG--------------ATTTCAATCCACCC-TTTTCATCACA-----CA-TA-GAGACA--TTTCCAAACT-TA---TGGTGTATAAATT
gi|5 : TGATTCAAGATCTCAAACATACGACAATACGTTAATTAGAAT-AAGATCACAAA-GAATAAACCTTCATCCTAGTCTAACCTCTACTGCCACCT-----AGAAGATATAGACTGAGTGCGGCTAACTAAACAATTCTG-TGTTCTCCGACACAGCCGTATAACTATCGAATCCT---AACCACCACG---ATTTCa
gi|6 : gaaggatttggtgcgatctgttaagcgttagatttgaatatttttaacgaatacataacaaaaataaattaatttcaaatgactaattgggtgccgcttaaggctttttttttcctaagaagcaattaaaaattcaaaactaaaagtgtagtgtttatttcgacgagcaactactagtctcactcacagacgaagttaaaagaatatatgccttcggcaattgactaaaatactaaatatatgtcgtatcgttatcctctgggtctatcGATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAAGAAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTC------TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACT-AACAATT
gi|6 : tgCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----T----CAC-ATTC---ACT-CACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaggaaccgagtggatagctgaacaattctcttgctttccgacacagtcctaagactatcctcacattcactcacagtgcagagtggacagagcaactggaaaattcagcgcagcggtatttataccatgttgccccaaattggttggttaatatattaactcctgattggtt
gi|7 : tggatagtgatctaagaactaaacaacgacaataagcaaatcaacaagaagatcacaaatataaaccctttctaagctaacctctacctcggtagaagtagactgagtggttaactaacaattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGATAATGATTCAAGAACT-AAACA-ATGACGATAAGCAAATCAACAATAAGATCAAAAA-C--TAAACCCT--ATCTTAACTAACCT-T-----TACTTCG--CAAGAG---TAGACTGAGTA--GCTAACTAA-CAATTCTATTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCACCACGA----CTCCCTACTCTTAAATAAAAGACACACAG
gi|7 : atcgttttcttcggtcatatctgACTGAGTAGCTAACT--AACAAT-TCTATTGTTCTCCGACACA------GC-CCACAACTACCGAACCTAAC----CA----C----CACGACTCCCTACT-CTTAAA--TAAAAG--ACACACAGTAACTGAAAAAGTCAGC--GCGGCGGCGGTATTTATACCCTGTTGTCCCAA----------------ATTG----------ATTGGCTAATACATTA------ACTTCTG--TTGGGTTA-------GAAAAGCAGTAA-TCTGATTGG--CT-AATAATTGAAGGC-----ATTTCAATCCA-CCTTTTTCATCACAATAACTCGTACAAGAAATGACT--AAAtaactgaaaaagtcagcgcggcggcggtatttataccctgttgtcccaaattgattggctaatacattaacttctgttgggttagaaaagcagtaatctgattggctaataattgaaggcatttcaatccacctttttcatcacaataactcgtacaagaaatgactaaacaatatagcctacaca
gi|8 : atcgttttcttcggtcatatctggataatgattcaagaactaaacaatgacgataagcaaatcaacaataagatcaaaaactaaaccctatcttaactaacctttacttcgcaagagtagGATAATGATTCAAGAACT-AAACA-ATGACGATAAGCAAATCAACAATAAGATCA-AAA-C--TAAACCCT--ATCTTAACTAACCT-T-----TAC-TCG--CAAGAG---TAGACTGAGTA--GCTAACTAA-CAATTCTATTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCACCACGA----CTCCCTACTCTTAAATAAAAGACACACAGcaatatagcctacaca
gi|8 : tatcgttttcttcggtcatatctgACTGAGTAGCTAACT--AACAAT-TCTATTGTTCTCCGACACA------GC-CCACAACTACCGAACCTAAC----CA----C----CACGACTCCCTACT-CTTAAA--TAAAAG--ACACACAGTAACTGAAAAAGTCAGCCGGCGG---CGGTATTTATACCCTGTTGTCCCAA----------------ATTG----------ATTGGCTAATACATTA------ACTTCTG--TTGGGTTA-------GAAAAGCAGTAA-TCTGATTGG--CT-AATAATTGAAGGC-----ATTTCAATCCA-CCTTTTTCATCAtaactgaaaaagtcagccggcggcggtatttataccctgttgtcccaaattgattggctaatacattaacttctgttgggttagaaaagcagtaatctgattggctaataattgaaggcatttcaatccacctttttcatca
gi|9 : tatcgttttcttcggtcatatctggataatgattcaagaactaaacaatgacgataagcaaatcaacaataagatcaaaactaaaccctatcttaactaacctttactcgcaagagtagGAACT-ACACA-ATGACAATAAGCAAATCAACAATGACACCACAAA-TA---AACCCT--CTCCTATTTAACTTCA------ACTTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAA-CAATTCTGTCATTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACCACCACGA----TGCCCTACTCTTAAGCGAAAGTCATATAGACACTATAAGTCATTATTTCT--AAGTCACCA-AGACA-CTGCTT-GTAAAGCCTAATCACATAGACACAGAACCTTGCCAAG----------------GCTG-AACAAT-TCTATTGCTTTCCGACACT------AT-CC-----TT--AGACTTGCTTCGGCT----T----CAC-ATTC---ACT-C
blockSeqs : C T G GAA CAT T TACTGCC T GC ATA CG A T GT T TAT AT G ATAAGTC TTCT C T CA C G A G CATGTA C ACAACTACC TGCTTCGG GGCTT G CCT A . C G CG CGG GCGATATTTATACTCT ACCCAAGTTT CATGTA GC GAAATCT T GA G ACGGT C CTT ATAAC G TG CC G C
blockSeqs : . . G TA T G AT C GT . . A T T . . AT G . TGC . T . C G . G . . ACAACTACC TGCT TGCTT G CCT . . C G . . . . TT . . . . . A C CTT . . . . G C
blockSeqs : . . T TA T G TT C GT . . A T A . . AT G . T . . . A G . G . . TT TGCT GGCTT . . . . . G . . . . . . . . . . A . TT . . . . . .
blockSeqs : . . T TA T T TT T GT . . A T A . . T T . T . . . A G . G . . TT TGCT AGCTT . . . . . T . . . . . . . . . . A . CC . . . .
blockSeqs : . . T TA A T TT C GT . . . T C . . . T . T . . A G . C . . TT TGCT GGCTT . . . . . T . . . . . . . . . . . . CC . .
blockSeqs : . . . TA T G TT C GC . . . T C . . . T . A G . C . . TA TGCA T . . . . . T . . . . . . . . . . . . CT .
blockSeqs : . . . A A A T T C . . . . C . . . . . C G . G . . TA TAAC T . . . . . T . . . . . . . . . . . . CT
blockSeqs : . . . C A A T T C . . . . C . . . C G . C . . TA TAAC T . . . . . T . . . . . . . . . . . . CT
blockSeqs : . C C T A . . . . . . . . A . . TT AT T . . . . . G . . . . . . . . . . . . .
blockSeqs : . . A . . TA AT C . . . . . G . . . . . . . . . . . . .
blockSeqs : . . A . . TT AT C . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . .
blockSeqs : . .
blockSeqCons : TA** GT* C* T*** G* TGCT**** T******** ** ***** CT*
originalCons : GATAGTGATCCAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAANCTAACCTCT-----TACCTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAAACAATTCTGTTGTTCTCCGACACGGCC-CACAACTACCGAA-CCT---AACCACCACGA--ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACA------GT-CC-----TA--AGACTTGNT----CC----T----CAC-ATTC---ACT-CACAGA--GCAGAGTGA-ACAGAGTAACTGGAAAATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATGATTGAAGGCA----ATTTCAATCCA-CC-TTTTCATCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
finalCons : GATAGTGATCCAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAATA--TAAACCCT--TTCTAANCTAACCTCT-----TACCTCGGT-AGAAG---TAGACTGAGTG--GCTAACTAAACAATTCTGTTGTTCTCCGACACGGCCC-ACAACTACCGAA-CCT---AACCACCACGAT---TTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACA------GT-CC-----TA--AGACTTGCT----CCT--------CAC-ATTC---ACT-CACAGA--GCAGAGTGA-ACAGAGTAACTGGAAAATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATGATTGAAGGC-----ATTTCAATCCA-CCT-TTTCATCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GAAGAGATTTGGTGACGATCTGTTTAAGCTAGGATTTGAAGTATTTGTAACGAACTACATAACAAAAAAAATAATTTCAAATACTAATTGGGTCCGCTTAGGTTTCTTCCTAAGAATCAATTTAAATCAAAATAAAAGTTAGTGTTTATTTCGACAGCAACTACTAGTCTCACTCACA
Unaligned ( gi|17 ): AAGAGATTTGGTGACGATCTGTTTAAGCTAAGATTCGAAGTATTTGTAACGAACTACATACTCAAAAAATTCATTTCAAATACTAATTGGGTCCGCTTAGGT
Alignments
lowQualScore : 2 1111 1 2222222 111111 1 111111111 33333333333333 111 2222222222222222 1111111111 111111 1111111 1 111 11111 11 11
lowQualScore : 4 4 4 0000 555 1 7777 1 99 777 55 0 3 0 1 0 4 4 777 4 8 7 5 1111111 111111 6 0 0 66 3 55 3 2 999999 3 888888888 33333333333333 3 6 000 3 44 6 1 55 555 0000000000000000 3333333333 222222 33 0000000 3 44 3 0 88888 0 6 222 44444 6 11 11 2 2
lowQualScore : . . . .... ... . .... . .. ... .. . . . . . . . ... . . . . ....... ...... . . . .. . .. . . ...... . ......... .............. . . ... . .. . . .. ... ................ .......... ...... .. ....... . .. . . ..... . . ... ..... . .. .. . .
lowQualScore : 4 4 0 1111 888 0 4444 4 00 000 55 8 0 1 9 7 4 4 888 4 9 3 6 7777777 888888 7 6 8 99 0 88 3 3 666666 3 777777777 33333333333333 1 2 888 1 66 7 9 00 888 4444444444444444 5555555555 111111 99 0000000 3 66 3 4 33333 0 7 666 33333 7 00 00 5 5
consensus : GATAGTGATCCAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAANCTAACCTCT--TACCTCG-GTAGAAG---TAGACTGAGTG--GCTAACTAAACAATTCTGTTGTTCTCCGACACGGCC-CACAACTACCGAA-CCT---AACC-ACCACG-ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACA------GT-CC-----TA--AGACTTGNT----CC-GCTT-CAC-ATTC---ACT-CACAGA--GCAGAGTGA-ACAGAGTAACTGGAAAATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATGATTGAA-----GGC-ATTTCAATCCA-CC-TTTTCATCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
Reference ( family-2039 ) : GATAGTGATCCAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAANCTAACCTCT--TACCTCG-GTAGAAG---TAGACTGAGTG--GCTAACTAAACAATTCTGTTGTTCTCCGACACGGCC-CACAACTACCGAA-CCT---AACC-ACCACG-ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACA------GT-CC-----TA--AGACTTGCT----CC----T-CAC-ATTC---ACT-CACAGA--GCAGAGTGA-ACAGAGTAACTGGAAAATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATGATTGAA-----GGC-ATTTCAATCCA-CC-TTTTCATCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|1 : ATAGTGATCTAAGAACT-AAACA-ACGACAAATAGCAAATCAACAAGAAGATCACAAAATA-TAAACCCT--TTCTAAGCTAACCTCT--TACCTCGCGTAGAAG---TAGACTGAGTG--GTTAAC-AAACAATTGTGTTGTTCTCCGACACGG-C-CACAACTACCGAA-CCT---AACCAACGACG-ATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTGAAACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----TGCAC-ATTC---ACT-CACACAGTGCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTG-CCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAA-----GGCAATTTCAATCCA-C----TACCTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|10 : AGCTG-AACAAT-TCTGTTGCTTTCCGACATACATGTAGT-CC-----TT--AGACTTGCT----CCGGCTT-CAC-ATTC---AGT-CAGGAA--ATCGAGTGA-ACAGGGTAACTGAAAAAGTCAGC--GCGG---CGGTATTTACACCCTGTTGCCCCAGGCGATATTTATACTCTGTTGACCCAAGTTTATTGGCTAATATATTC------ATTCCTG--ATTGGTTAGAAATCTGAAAAGCAGTAA-TCTGACTGG--TT-AGTGGTTGAAGGTACGGT-ATTCTAAT----CT-TTTTCATCACA-----aa
gi|11 : ACACAATACTTTGTAGGGGCAGACAGAGTTGCAAACT--AACAATATCTGCT-----CCGACA--------GT-CC-----TT--AGACTTGCT----CCTGCTT-TAA-ATTC----CT-CACGGA--ATTAAGTGA-AC----TA--TGGAAAAGACAGA--GT-G---CAGTATCT---CCATTCTGCC---A----------------GTTG----------GTTGGCTAATAC---A------ACTTCTG--A-TAGTT---------AAAAACCATAATTCAAAATGGGACTGAATGATTTGA-----AGC-A-CTCAGTCCA-C
gi|12 : catcaAGCTG-AACAAT-TCTGTTGCTTTCCGACAAG------GT-CC-----TT--AGACTTGCT----CTGGCTT-CAC-ATTC---TCT-CACAGA--ACAGAGTAA-AT--------TGAAAAGGTTAGC--GCGG---CGGTATTTATACCCCGTTGTTCCGA----------------GTTG----------ATTGGTTAATGCATTACATGTAACTCCTG--ATTAGTTA-------GAAAAGCTGTAA-TCTGATTTG--CT-AATGATGGAA-----GGC-ATTTCAATCCA-CC-CTTTtatattcac
gi|14 : ----CT----T-CAC-GTTC---ACT-CACAGA--ACAGAGTGA-ACAGAGTAACTGAAACATT-AGC--ACGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGTCAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGCTGTAA-TTTGATTGG--TT-AATGATTGAA-----GGC-ATTTCAATCCA-CC-CTTT
gi|15 : ggAA-AAGA---CAAA--A-TAAACCCC--TCATAAT-TAGCATCA--TCTTTTG-GCAGTTG---TAGACAGAGTG--CCTAACT-------TTTG--------CGACAAAGCC-TTCAACGACCGA--CCTTATAGTC-ACCGCT-ATTTTATGAC-CT----CAGAAGCCACGCAGACACT-------ATTGC---TGCAAGTT-CCACAGACtc
gi|16 : CCTGTTGCCCCAA----------------GTTG----------ATTGGTTAATATACCA------ACTCCTG--ATTGGTTA-------GAAAATCTGTAA-T--------------ATGATTGAC-----GGC-ATTTCAATCCACCC-TTTTCATCACA-----TT-Tact
gi|18 : ACAGA----CGCGAAGG--ATCTGAGTGCCCAGCTG-A-CAAT-TCTGCAGCTTTCTGATACA------ATCCC-----TA--Atc
gi|19 : CGG---CGGTATTTATACCCTGTTACCCAAA----------------GTTG----------ATTGGCTAATACATTATT----ACTCCTGGCATT--TCA-------AAAAGGCcgttgtcctgaataccgactc
gi|2 : GATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTCT--TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACTAAACAATTGTGTTGTTCTCCGACACGGCC-AACAACTACCGAA-CCT---AACC-ACCACGAATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----T-CAC-ATTC---ACTACACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAA-----GGCAATTTCAATCCA-C----TACCTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTTcttt
gi|20 : GCTGATACATTT------ACTCCTG--ATTGGTTA-------GAATTACCGTAC-TCCAATTGG--CT-AATG--------------------AATCCA-CC-TTTTTA
gi|21 : GACTTGCT----CCAGCTT-CAC-ATTC---ACT-CACAGA--GCAGAGTGA-Acattaa
gi|3 : GATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAA-AAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTCT--TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACTAAACAATTGTGTTGTTCTCCGACACGGCC-AACAACTACCGAA-CCT---AACC-ACCACGAATTTCCCTACTCTGAAGCAAAAGTCACACAGACACT-------ATTAT---T--AAGTCACCA-AGACCTCTATTTCGTAAAGCCTAGTCACACAGACACAGAACCTTGCCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----T-CAC-ATTC---ACT-CACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTA-------GAAAAGATGTAA-TCTGATTGG--CT-AATGATTGAA-----GGCAATTTCAATCCA-C----TACCTCACA-----TC-TGCGAGAAA--ATT--AAATTGCACAGTTGTGTATAATTT
gi|4 : GATAATGATTCAAGAACT-AAACA-ATGACAATAAGCAAACCAACAAGAAGATCACAAA-TA-TAAATCCT--ATCTAATCTAACCTCT---ACTTCG-GTAGAAG---TAGACCGAGTG--GCTAACTAA-CAATTCTGTTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACC-AACACG-ATT-CCCTACTCTGAAGCAAAAGTCACACAGACACT-------TTTGC---T--AAGTCACCA-AGACA-CTAAT-CGTAAAGCCTGGTCACACAGACACAGAACCTTGTCAAGA--AACCGAGTGGATAGCTG-AACAAT-TCTGTTGCTTTCCGACACG------GT-CC-----TT--AGACTTGCA----CCGGCTT-CAC-ATTC---ACT-CACAGA--GCAGGGTGA-ACAGAGTAAGTGAGAGATTCAGC--GCGG---CGGTATTTATACCCTGTTGCCCCAA----------------GTTG----------ATTGGCTAATACATTA------ACTCATG--ATTGGTAA-------GAAAAGCTGTAA-TCTGATTGG--CT-AATG---------------ATTTCAATCCACCC-TTTTCATCACA-----CA-TA-GAGACA--TTTCCAAACT-TA---TGGTGTATAAATT
gi|5 : TGATTCAAGATCTCAAACATACGACAATACGTTAATTAGAAT-AAGATCACAAA-GAATAAACCTTCATCCTAGTCTAACCTCTACTGCCACC--TAGAAGATATAGACTGAGTGCGGCTAACTAAACAATTCTG-TGTTCTCCGACACAGCCGTATAACTATCGAATCCT---AACC-ACCACG-ATTTCa
gi|6 : gaaggatttggtgcgatctgttaagcgttagatttgaatatttttaacgaatacataacaaaaataaattaatttcaaatgactaattgggtgccgcttaaggctttttttttcctaagaagcaattaaaaattcaaaactaaaagtgtagtgtttatttcgacgagcaactactagtctcactcacagacgaagttaaaagaatatatgccttcggcaattgactaaaatactaaatatatgtcgtatcgttatcctctgggtctatcGATAGTGATCTAAGAACT-AAACA-ACGACAATAAGCAAATCAACAAGAAGATCACAAA-TA-TAAACCCT--TTCTAAGCTAACCTC---TACCTCG-GTAGAAG---TAGACTGAGTG--GTTAACT-AACAATT
gi|6 : tgCAAGG--AACCGAGTGGATAGCTG-AACAAT-TCTCTTGCTTTCCGACACA------GT-CC-----TA--AGACT--AT----CC----T-CAC-ATTC---ACT-CACAGT--GCAGAGTGG-ACAGAGCAACTGGAAAATTCAGC--GCAG---CGGTATTTATACCATGTTGCCCCAA----------------ATTG----------GTTGGTTAATATATTA------ACTCCTG--ATTGGTTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaggaaccgagtggatagctgaacaattctcttgctttccgacacagtcctaagactatcctcacattcactcacagtgcagagtggacagagcaactggaaaattcagcgcagcggtatttataccatgttgccccaaattggttggttaatatattaactcctgattggtt
gi|7 : tggatagtgatctaagaactaaacaacgacaataagcaaatcaacaagaagatcacaaatataaaccctttctaagctaacctctacctcggtagaagtagactgagtggttaactaacaattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGATAATGATTCAAGAACT-AAACA-ATGACGATAAGCAAATCAACAATAAGATCAAAAA-C--TAAACCCT--ATCTTAACTAACCT-T--TACTTCG--CAAGAG---TAGACTGAGTA--GCTAACTAA-CAATTCTATTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACC-ACCACG-A-CTCCCTACTCTTAAATAAAAGACACACAG
gi|7 : atcgttttcttcggtcatatctgACTGAGTAGCTAACT--AACAAT-TCTATTGTTCTCCGACACA------GC-CCACAACTACCGAACCTAAC----CA----C-CACGACTCCCTACT-CTTAAA--TAAAAG--ACACACAGTAACTGAAAAAGTCAGC--GCGGCGGCGGTATTTATACCCTGTTGTCCCAA----------------ATTG----------ATTGGCTAATACATTA------ACTTCTG--TTGGGTTA-------GAAAAGCAGTAA-TCTGATTGG--CT-AATAATTGAA-----GGC-ATTTCAATCCA-CCTTTTTCATCACAATAACTCGTACAAGAAATGACT--AAAtaactgaaaaagtcagcgcggcggcggtatttataccctgttgtcccaaattgattggctaatacattaacttctgttgggttagaaaagcagtaatctgattggctaataattgaaggcatttcaatccacctttttcatcacaataactcgtacaagaaatgactaaacaatatagcctacaca
gi|8 : atcgttttcttcggtcatatctggataatgattcaagaactaaacaatgacgataagcaaatcaacaataagatcaaaaactaaaccctatcttaactaacctttacttcgcaagagtagGATAATGATTCAAGAACT-AAACA-ATGACGATAAGCAAATCAACAATAAGATCA-AAA-C--TAAACCCT--ATCTTAACTAACCT-T--TAC-TCG--CAAGAG---TAGACTGAGTA--GCTAACTAA-CAATTCTATTGTTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACC-ACCACG-A-CTCCCTACTCTTAAATAAAAGACACACAGcaatatagcctacaca
gi|8 : tatcgttttcttcggtcatatctgACTGAGTAGCTAACT--AACAAT-TCTATTGTTCTCCGACACA------GC-CCACAACTACCGAACCTAAC----CA----C-CACGACTCCCTACT-CTTAAA--TAAAAG--ACACACAGTAACTGAAAAAGTCAGCCGGCGG---CGGTATTTATACCCTGTTGTCCCAA----------------ATTG----------ATTGGCTAATACATTA------ACTTCTG--TTGGGTTA-------GAAAAGCAGTAA-TCTGATTGG--CT-AATAATTGAA-----GGC-ATTTCAATCCA-CCTTTTTCATCAtaactgaaaaagtcagccggcggcggtatttataccctgttgtcccaaattgattggctaatacattaacttctgttgggttagaaaagcagtaatctgattggctaataattgaaggcatttcaatccacctttttcatca
gi|9 : tatcgttttcttcggtcatatctggataatgattcaagaactaaacaatgacgataagcaaatcaacaataagatcaaaactaaaccctatcttaactaacctttactcgcaagagtagGAACT-ACACA-ATGACAATAAGCAAATCAACAATGACACCACAAA-TA---AACCCT--CTCCTATTTAACTTCA---ACTTCG-GCAGAAG---TAGACTGAGTG--GCTAACTAA-CAATTCTGTCATTCTCCGACACAGCC-CACAACTACCGAA-CCT---AACC-ACCACG-A-TGCCCTACTCTTAAGCGAAAGTCATATAGACACTATAAGTCATTATTTCT--AAGTCACCA-AGACA-CTGCTT-GTAAAGCCTAATCACATAGACACAGAACCTTGCCAAG----------------GCTG-AACAAT-TCTATTGCTTTCCGACACT------AT-CC-----TT--AGACTTGCTTCGGCT----T-CAC-ATTC---ACT-C
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GAAGAGATTTGGTGACGATCTGTTTAAGCTAGGATTTGAAGTATTTGTAACGAACTACATAACAAAAAAAATAATTTCAAATACTAATTGGGTCCGCTTAGGTTTCTTCCTAAGAATCAATTTAAATCAAAATAAAAGTTAGTGTTTATTTCGACAGCAACTACTAGTCTCACTCACA
Unaligned ( gi|17 ): AAGAGATTTGGTGACGATCTGTTTAAGCTAAGATTCGAAGTATTTGTAACGAACTACATACTCAAAAAATTCATTTCAAATACTAATTGGGTCCGCTTAGGT