lowQualScore : 444444 3 22 11111111 111 2222 1 333 11 222222222 111 1111 11 33333333333333 333 1 1 3333333333 2222 5555 33 1 111 4 2 1 1 1 1 1 111 11 111 111111 111 22 3333 1 111 33 44444 22 5555555555555 44444444444444444444444 22 1 111 11 4 1 222 1 11 2 1 1 1 1 2 11 444444444 4 1 1 3 222 1111111 33 1 11 111111 11 1 11111 222222 44 1111111111 11 11 1 1111 222222 11 11 333333333333 222 3 33333333333 1 222 1 4 222222222 1 1 111 3 2 22 111 666666666666666666666666 1111 22222 3 111
lowQualScore : 2 222222 0 3 5 8 0 5 3 00 99 99 99999999 111 6 6 0000 3 000 8 6 00 777777777 9 666 0 4444 33 8 8 3 11111111111111 5 000 0 8 3 99 6 6 1 6 6 0 2222222222 7777 2222 0 3 2 2 4 33 2 3 7 888 0 3 5 8 0 0 0 0 8 8 66 3 6 8 777 44 000 222222 444 8 88 5 6 2222 0 777 6 44 3 33333 5 2 55 1111111111111 2 2 8 7 55555555555555555555555 8 3 0 22 6 0 777 66 6 0 3 333 3 88 3 3 3 3 7 2 8 6 99 333333333 6 7 0 3 3 1 7 111 6 9999999 11 6 3 44 999999 7 11 8 6 8 22222 0 0 0 333333 8 5 8 8 8 00 8 5555555555 11 11 6 333 8 6 7777 999 666666 1 11 1 6 8 8 33 3 333333333333 333 3 3 6 2 99999999999 2 1 333 7 3 0 6 666666666 2 3 3 000 3 4 2 6 6 6 99 77 6 0 99 222 99 000000000000000000000000 4444 4 55555 2 1 2 6 333
lowQualScore : . ...... . . . . . . . .. .. .. ........ ... . . .... . ... . . .. ......... . ... . .... .. . . . .............. . ... . . . .. . . . . . . .......... .... .... . . . . . .. . . . ... . . . . . . . . . . .. . . . ... .. ... ...... ... . .. . . .... . ... . .. . ..... . . .. ............. . . . . ....................... . . . .. . . ... .. . . . ... . .. . . . . . . . . .. ......... . . . . . . . ... . ....... .. . . .. ...... . .. . . . ..... . . . ...... . . . . . .. . .......... .. .. . ... . . .... ... ...... . .. . . . . .. . ............ ... . . . . ........... . . ... . . . . ......... . . . ... . . . . . . .. .. . . .. ... .. ........................ .... . ..... . . . . ...
lowQualScore : 5 222222 0 2 4 0 8 2 0 77 22 22 33333333 777 7 7 2222 2 888 0 0 66 555555555 8 888 8 2222 00 0 0 8 88888888888888 0 888 0 0 0 22 7 7 7 7 7 0 8888888888 4444 2222 8 2 2 5 0 55 5 2 0 000 0 7 0 3 0 0 0 2 0 0 88 0 0 0 444 00 000 666666 000 0 44 0 0 5555 0 000 0 88 2 55555 0 2 00 0000000000000 2 2 8 0 00000000000000000000000 0 2 2 55 5 0 555 55 7 0 3 333 3 33 3 3 3 3 3 7 7 7 33 000000000 0 3 0 3 3 7 3 333 7 7777777 00 7 3 00 333333 3 00 0 0 0 44444 6 6 6 000000 0 6 0 0 0 00 0 2222222222 00 00 4 666 0 0 0000 222 000000 4 00 4 8 0 0 22 2 000000000000 888 2 8 0 2 00000000000 3 0 333 3 3 0 0 777777777 0 7 3 333 2 2 3 7 3 7 22 55 7 7 77 777 22 000000000000000000000000 2222 8 88888 5 8 5 7 111
consensus : GCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGNGTCTAAAGGATACATGTA--TGCAGAATGTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGT-CCATGAAGANT-ATCA--TTAAGGA--TAAAACTGGTC-TCGTCAGA---ATTGGAGGAAAAAC-ATCACCT-GCCAT--AATTGTGGTGGCCAAGGGCCATTTAAAGG-AGGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAA-AG------TACGAGCTCAAGAAAAATCAGGGGTTCG--TCAGCAAA-TGT-GC-AAACTAANGG--AATAAC-GCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGGT-GCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCCGTTTCAGAAAAACAAC--CTCCTTGGATCCCATTNGAAAGCCNATCAT-AGGTGCAAGTGGTGAAAC-G-TTAGTTGT-ATATGGTCGAACACAAATA-CTCATTAGAGTAGGGAATAAATCATATAA-CATT-ACA-GCTGCTATTGCTGACATTAA-CA-TGGATGGAGTTCTAGGACTGGACTT-CATGAGC-AG-A-AACAACTGC-ACGATCAATGTGGCTGAGGGAGAA---ATAAT-CATTGCGGG-GAAANCTATTA--AACT-CTTAAAAAG--TGGGCATTGATGGATGCCGCAA-GGAAAACGTG-CGAGAAA--TGTAN-G--TCACGCCCGATTACAATGAGG--AAAA-GTAATACAACAACTGTTGGGT-GTAGCACTTTGGAAATGACTGTTGACGAGCGT-AATAGAAGA---GGAN-AGACCCCTATC-TGTTCTCCA-GAAAAA---CG-ATGTTGA--AATCAGCAAAGTAAGGAGTTGGTTGGAGC-AAA-GGTGAGACCAGAAAGC-CTGGAATTGTCNTCG-GGAGGGACCGAT-CGTTG--AAGTCTCTTGTGGTCCCA-AAGAGCAC-TTTT-AGAGGT-TAAGGATGATCTTACTCTGTAGA--CGATTGACTGA-TAAAGAGGGA-TCC-GCCCT-C-AANCTATTGTGCCT--TC-AGCGTA-GAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCA-GGTCACC-TT-GG-AGTAAC-A-AAGACT--TTAAGTAAAA--TAAGNCAGGCATTTTA-CTGGCCTGGGCTACAGAAAA-ATGT----CA-G-ACA-GTA-CATAGCCGGTTG--TGAGGTC-TG-CA-TGAAATCAAAGAGC------CC-GA-ACAAAAC--TATGAG-AGCACCAATGCAG-CTCGTAG--NGGGCTGGGACACCT---ATGGAACGCGTAGCA-ATG-GATATCGTT-GG-GAACTCTCGCGCACCGACA-GAAACAACAGGTATCAA-GTCGGAAAA-TCT-CCAAAACT-TA--CACAGTTTTGGAGAGG-TTCAT-TTGCTGTTGAG--GCAAAAC--TA-TCA-G-ATC-TA---AACTTACA----AAGTTAGA-----TGTGGTTCAAAGGGT-AAATCTCAAGCTA-TACATGTGGTGGACAGA
Reference ( gi|2 ) : GCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATA-AGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACTCCAGT-CCATGAAAAAT-ATCA--TTAAGGA--TAAAACTAGTCTTCATCAGA---ATTGGAGGAAAAAC-ATCACCT-GCCAT--A-TTGTGGTGGCCAAGGGCCATTTAAAAGAAGGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAACAG------TACGAGCTCAAGAAAAATCAGGGGTCCG--TCAGCAAA-GGT-GC-AAACTAAAGG--AATGAC-G-GGAGTAAATGGTTACCTTCGGGCGTA-CTGGATTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGGT-GCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCCTTTTCAGAAAAACAACTACTCCTTGGATTCCATTCGAAAACCAATCACGAGGTGCAAGTGGTGTAAC-G-TTAGTTGTTATATGGTCGAACACAAATAACTAATTAGAGTAGGGAATAAATCTTATAA-CATT-ACA-GCTGCTATTGCTGACATTAA-CA-TGGATAGAGTTTTAGGACTGGACTT-CATGAGC-AG-A-AACAACTGT-ACGATCAATGTGTCAGAGGGAAAA---ATAAT-CATTGCGGATGAAACCCATTC--GACT-CTTAAAAAG--TGGACATTAATGGATGCCATAA-GAAAAACATC-CAAGAAA--TA-AT-G--TTATACCCAAGTACAATGAG---AACA-GTAAT---AC---TCTTGGGT-GTAGCACTTTGGAAATGACTGTTGACGAACGT-AATAGAAGA---GGAG-AGACCCCTATCCTGTTCTCCA-GAAAAA---CG-ATGTTGA--AATCAGCAAAGTAAGGCGTTGGTTGGAGC-AAA-GGTGAGACCAGAAAGC-CTGGAATTGTCATCGAGGAGGGACCGAT-TGTTG--AAATCTCTTGTGGTCCCACAAGAGCAC-TTTT-AGAGGTGTAAGGATGATCTTACTCTGTAGA--CGATGGACTGAATAAAGAGGGA-TCC-GCCCT-C-AATCTATTGTGCCT--TC-AGCG-A-GAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCA-GGTCACCGTT-GG-AGTGAC-A-AAGACT--CTAAGTAAAA--TAAGGCAAGCATTTTA-TTGGCCTGGGCTACAAAGAA-ATGT----CA-G-ACA-GTA-GATAGCCGGTTG--TGAGATC-TG-CA-TGAAATCAAAGAGC------CC-AA-ACAAAAC--AATGAGAAGCATCAATACAG-CGCGTAG--AGGGCTGGAACACTT---ATGGAACGCATAGCA-ATGTGATGTTGTT-AG-GAACACTCGCGCACCGACA-GAAATAACAGGTATCAAAGTCGGAAAAATCT-CCAAAGCT-TA--CA--GTTTTGGAGAGG-TCCAT-TTGCTTTTGAG--GCAAAAC--TG-TC--G-ATC-GA---AACTTACA----AGGTTAGA-----TGTGGTTCAAAGGGTAAAATCTCAAGTTA-TACATGTGGTGGACAGACTCATC
gi|5 : GCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATA-AGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACTCCAGT-CCATGAAAAAT-ATCA--TTAAGGA--TAAAACTAGTCTTCATCAGA---ATTGGAGGAAAAAC-ATCACCT-GCCAT--A-TTGTGGTGGCCAAGGGCCATTTAAAAGAAGGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAACAG------TACGAGCTCAAGAAAAATCAGGGGTCCG--TCAGCAAA-GGT-GC-AAACTAAAGG--AATGAC-G-GGAGTAAATGGTTACCTTCGGGCGTA-CTGGATTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGGT-GCATCACTGACAATCTTGT
gi|4 : catatctgttttggtggcagtggtgggaatcatattgaacatgaatttcagtgagtcaacgctactataagagaaattgaggccaaattagtcacatacgaagtcgacactccgtatagaccacatcaaacaccacgagtgccaaagtatcagagcacggaattttctgcatgcagttctggtatcactacaatgaaacagttgcaagaccaaatctgagtacaaccttgaggataaagataaacgaaaatctgggaaatttcagtcagatgatgcaaaatacgacactgagaaataccttacctaaagatgagcagctcgaaagcttgcccactttgcatcgacctctagatgacgttaatgtaacaatgagaaataaaacgcgaaaagaacatgtgagcaagaacgaactcgtgctcaaaaatgatatagcatctagattgccgatgaaatctgaggagtctatgcgtataaaagtgaagcctgctacttatagatggtacacacaccatggcttgatttcagatctcaacttttgaggcgtgcgctaagcttagacgatggagtgaggaggagaaaggtctctatctttatttgtccttacgagggctggcacaagggatgcataggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaatgacgccctttgctcctcccgatcaactttataggatacaaactgagggagagacaacagaaagcgtccgagtcatttgccagaactcggacagcatataagacggctcacaaatctcgcctaccctactgtccctgctgatgtgcaagaaacgctgtccaagagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtatcaagcaggcaggcctcttaatctcaacgatgccgttagacaccGCTGTGGAACTCCAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGGCTAAAGGATACATG------CAGAATGTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGTCCCATGAAGAA
gi|21 : ttggggcagcggtgggatcatattgaacaatgaatctcagtgagctcaacgctactataagagaaattgaggctaaattaggctcaatacgaagtcgcaactccgttagaccatcaacacctcgagtgccaaagtatcagagcacggaattttctgcatgcgattctggtatcactacaatgatatctgttgcaagaaccaaatctgagtacacctgaggataaagataaacgaaaatctgtgaaatttcagtcagatgatgcaaaatacgacctgagcaaatacctacctaaagatgagcagctcgagagcatgtccactttgcattgcacctctagagacattaatgtaacaatgagaaataaaacgcggaaaagaacaaatgagcaagaacgagctcgtgctcaaaatgatataccatctagattgccgataaaatctgaggagcctatgcgtataaaagtaaagcctgctacttatgatggtaccacaccatggcttgatttcagatctcatttgaggcgtgcgctaagcttggacgatggagtgaggaggagaaaggtctctatctttctatgtccttacgagggctggcacaagggatcctaggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaaaaccgctttgctcctcccgatcaaatggaactttataggatacaactgagggagagagaacaggaagcgtccgagtcattaccagaactcggacagcatattaaggcggctcacaaatctcgcctaccctactgtccctgctgatggcgagaaacgctgtcaaaagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtattaagcaggcaaggcctgttaatctcaacgatgcgttaaacacCTGTGGAACTCGAGGCATATTTCGAGGCAGTGGGAAAACTTCGAGAGTCTAAAGGATACATGTAGTTGCAAATCGTCGATACCGCTGACAATACACCACTTAAAGAAACCGACAACATACACTTCATCTTGGATGAGTTACGCCAGT-CCATGAAGAaaggaagaaaagatcaagtcaattaagtccagaatacttatcacattaaggataaaactagtcgtcgagaattggaggaaaaacatcacctgccataattgtggtggcaaggaccatttaaaggggaatgtaacaaatctaaaaatgctgcgagtaaagtacaggctcaagaaatcagggttcgtcggcaaatgtgcaaactaaaggtaaactgcggagtaaatggttacttggagtactggactctttcttgagaccgttgttgaggaaagtaaatgcatcattactcgtcgataccggtgcatcactgacaatcttgt
gi|7 : TATTTCAAGGGAGAGGGAAGACTTCGAGAGTCTAAAGGATACATG------CAGAATGTCAATACAGCTGGCAATGTACCACTTAAAGAAACTGACGACATACACTCTA-TTTAGATGAGTTATGCCAGT-CCATGAAGACT----A--TGGAGGA--AAAGATCAA--TTCATTTGACTGATTTGAGGTCCAA--ATTACTT-ATCAC--A-TT
gi|4 : AGTCAATTAAGT-CCA-GAATACTTATCACATTAAGGA--TAAAACTAGTCGTCG--AGA---ATTGGAGGAAAAAC-ATCACCT-GCCAT--AATTGTGGTGGC-AAGGACCATTTAAAGG---GGAATG-TAACAAATCT--AAAAATGCTGCGAGTAA-AG------TACAGGCTCAAGAAA--TCAGGG-TTCG--TCGGCAAA-TGT-GC-AAACTAAAGGTAAACTGC-G-G-AGTAAATGGTTACTT---GGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGGAAAGTAAATGCAT-CATTACTCGTCGATACCGGT-GCATCACTGACAATCTTGTaaggataaaactggtcgtcagaattggaggaaaaacatcacctgccataattgtggtggcaagggccatttaaagagggaatgtaaaaaatctgaaaatgctgtgagtaaagtacgagcccaagaaaatcaggggtcatcaccaaatgtgcaaaccaattgtaactgcggagtaaatggttaccttgggagtactgggctctttcttgagacagttgtggaaaaaagtaaatgcatcattaatcgtcgataccggtgcatcactgacaattttgtctaaaaggatttatgacagcctttcagaaaaacactccttggatcccattcgaaaaccaatcatatgtgcaagtggtgaatcgtaagttgtatatggtcgaacacaaatactcattagagtagggaataaatcttatagcattacagttgctattgctaacattaatatggatggggttttaggactggacttcatgagcagaaacaactgcacaatcaatgtggctgagagagaaatgatcattgcgggcaaagctattaaactcttagaatgtgggcattatggatgccacagaaaaacatacaataaacgtagggttatgtccgagtacaatgagaaaagtaatacaactgtagggtgtagcactttggatatgactattgacgacataatagaagaggacag
gi|1 : ttggggcagcggtgggatcatattgaacaatgaatctcagtgagctcaacgctactataagagaaattgaggctaaattaggctcaatacgaagtcgcaactccgttagaccatcaacacctcgagtgccaaagtatcagagcacggaattttctgcatgcgattctggtatcactacaatgatatctgttgcaagaaccaaatctgagtacacctgaggataaagataaacgaaaatctgtgaaatttcagtcagatgatgcaaaatacgacctgagcaaatacctacctaaagatgagcagctcgagagcatgtccactttgcattgcacctctagagacattaatgtaacaatgagaaataaaacgcggaaaagaacaaatgagcaagaacgagctcgtgctcaaaatgatataccatctagattgccgataaaatctgaggagcctatgcgtataaaagtaaagcctgctacttatgatggtaccacaccatggcttgatttcagatctcatttgaggcgtgcgctaagcttggacgatggagtgaggaggagaaaggtctctatctttctatgtccttacgagggctggcacaagggatcctaggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaaaaccgctttgctcctcccgatcaaatggaactttataggatacaactgagggagagagaacaggaagcgtccgagtcattaccagaactcggacagcatattaaggcggctcacaaatctcgcctaccctactgtccctgctgatggcgagaaacgctgtcaaaagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtattaagcaggcaaggcctgttaatctcaacgatgcgttaaacacgctgtggaactccaggcatatttcaaggcagagggaaaacttcgagcggctaaaggatacatgcagaatgtcaatacagctgacaatgcaccacttaaagaaactgacgacatacactctattttggatgagttacgccagtcccatgaagaaaaggaagaaaagatcaCA--TTAAGGA--TAAAACTG----TCGTCAGA---ATTGGTGGAAAAACTATCACCT-GCCAT--AATTGTGGTGGCTAAGGGCCATTAAAAAG--GGGAATGATAAACAAAATCTAAAATTGCTGCGAGTAA-AG------TACA--CTCAA-AGAAATC-GAGGTTCGGGTCAGCAAATGGTCGC-AGACTAA-GT--AAT-AC-GCGGAGAAAATGGTTACCTT--GGAGTA-CTGGACTCTTTCTTG--AGACCTGTTGCTTGAGAAAAGTAAATGCCT-CATTAATCGTCGATACCGGTTGCATCACT-ACAATCTTGTCT-AAA----------GGATTTATGACACCCGT--CAGAAAAACAACC---CCTTGA--TCCATTAGAAAGCCTATCATAGGTTGCAA-TGG-GAAAC-A-TTAGTTGT-ATATGGTCGAACACAAATTACTCATTAGAGTAGGGAATAAATCATATAAACATTTACAAGCTGCTATTGCTGACATCAA-CAATTGA-GGAGTTCTAG-ACTTGACTCGTATGAGCCAG-TTAACAACTGCCACGATCAATGTGGCTG--TGAAAA---ATAAT-CATTGCGGG-GAAAACTATTTTAAACT-CTTAAAAAG----GGCATTA-TGGATGCCGCA--GTAAAACGTG-CGAGAAA--TGTAT-GGTTCATGCCCGATT-CAATGAGGT-AAAA-G-AAT---ACAACTGTTGGGTTGTAGCACCTTG-AAAGGACTGTTGACGAGC-T-AATAGAAGA---GGAC-AGACCC-TATC-TGTTCTCCATGAAAAAAACCG-ATGTTGATAAATAAGCAAAGTAAGA-GTTGGTTGGAGC-AAA-AGTGAGACCAGAAAGC-C-GGAATTGTCCTTCGGGAGGA--CGATGCGT----AAGTCTTCTGTGGTCCCA-AAGAGCACCTTTT-AGAGGT-TAAGG-TGAT-TTACTCTGTAGAAACAACTGACTGA-TAAAGAGGGAATCC-ACCCT-C-CAACTATTGTGCCTCTTC-AGCG-A-GAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCATGGTCACC-TT-GGTAGT-ACAA-AAGACTGGTTAAGTAAAA--TAGGGCAAGCA-TTTA-TTGGCCT-GGCTACAAAGAAGATGT----CAGG-ACA--T---ATATCCGGTTT--TGAAATC-T--CA-TGAAATCAAAGAGC------CCGAA-ACAAAAC--TATGAG-ATCACCAATGCAGCCTCGTA---AGGGCTG
gi|7 : cttatttgattagtacgccttcgcatgaagaaaatggaagaaagtcaagtcaatataagttcagaattacttagttcaCA--TTAAGGA--TAAAACTGGTC---GTCAGA---ATTGGAGGAAAAAC-ATCACCT-GCCAT--AATTGTGGTGGC-AAGGGCCATTTAAAG--AGGGAATG-TAAAAAATCT--GAAAATGCTGTGAGTAA-AG------TACGAGCCCAAGAAAA-TCAGGGGTC-A--TCACCAAA-TGT-GC-AAACCAATTG----TAACTGCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGGCTCTTTCTTG--AGACA-GTTG-TGGAAAAAAGTAAATGCAT-CATTAATCGTCGATACCGGT-GCATCACTGACAATTTTGTCT-AAAA---------GGATTTATGACAGCCTTT-CAGAAAAACA----CTCCTTGGATCCCATTCGAAAACCAATCAT-ATGTGCAAGTGGTGAATC-G-TAAGTTGT-ATATGGTCGAACACAAATA-CTCATTAGAGTAGGGAATAAATCTTATAG-CATT-ACA-GTTGCTATTGCTAACATTAA-TA-TGGATGGGGTTTTAGGACTGGACTT-CATGAGC-AG-A-AACAACTGC-ACAATCAATGTGGCTGAGAGAGAA---ATGAT-CATTGCGGGC-AAAGCTATTA--AACT-CTTAGAATG--TGGGCATT-ATGGATGCCAC-A-GAAAAACATA-CAATAAACGTA-GG-G--TTATGTCCGAGTACAATGAG---AAAA-GTAATACAAC---TGTAGGGT-GTAGCACTTTGGATATGACTATTGACG-ACAT-AATAGAAGA---GGAC-AGacatagcaatgctgagacagatagtcgttgtatgaccagagacttctctgcaatcttcaaattcctggtgatgaaagtttatgtgtattttccaaggcaagtatcaagtcggaaaatcccccaaagctacacagttttggagaggtttcatttgtgttgaggcaaaaataatcagatttaacttacaaagttagatttgtggttcaaagagtaaatccaagttattacatgtggacgaatgtgtctcaaaagaagacaggaactgtcacataaaattatgttgaaaaagaaaactcagatgattttaccagagtaacagatcaatctggtttcagatgaagggtacacagattatgacgatacaagtctgagcaaatatacgctagtttgagaaagtaattgtctcattcctgaagcgagattaagaaaccaccaaagtggtatcacattatgaaacatataagtgtgtcatttccctgcaagaaaaataaggctgtgagaaacagcaacgataagagttaattcgctatatatatgatgcaaatatgaaatgttcaagatttaaaaaaatcatttgataacttgaccagtatcgat
gi|12 : tatttcaagggagagggaagacttcgagagtctaaaggatacatgcagaatgtcaatacagctggcaatgtaccacttaaagaaactgacgacatacactctatttagatgagttatgccagtccatgaagactatggaggaaaagatcaattcatttgactgatttgaggtccaaattacttatcaCA--TTAAGGACTTAAAACTGGTC---GGCAGT---ATGTGTCGAAAAAC-ATCACCTTGCCATTAA-TTGTGGTGGGCAAGGGCCATATAAAG--AGGAATTG-TGAAGAA-ATCTAAAAATGCTGTGAGTAA--G------TACG--CCCAAGAA----CAGAGGTT-G--TCAGCAAA-TGT-GCCAAAC-AATGG----TAAC-T-GCGATAAATG-TTACCTT--GGAGTAACTGGACTCTTTTCTGGGAGACC-GTTG-TGGAGAAAG--AACTGCATGCATTACTCGTCGATACCGGT-GCATCACTGACAATCTTGTCT-AAAAAAAGGGGGGGAATTTATGACAACC-TTTCAGAAAAGAAAC-ACTCCTTGGATCCCATTCGAAAATCAATCAC-AGGTGCAAGTGGTGAAACTGTTTAGTTG
gi|20 : gatgacgtaaaatggagaaacaatcaagtcaattgaggtccagcaatacttgatcaAAATGTTGTGAGAAACAGCAATGATACGAGCTCAA
gi|25 : tttgccatttcttttgcagaatatgcctacaagaac--AGACC-GTTG-TTGAGAAA-GTAAATGCCT-CATAACTCGTGGATACCGGT-GCATTACTGACAATGTTGTCTAAAAA---------GGATTTATGACAGCC-TTTCAGTAAAAcattcgtaatgaatatcttgtaatatttgaaatgctcctattaaatttcattttataaattttcattgttgagtttatgcgagcacg
gi|15 : A---------GGATTTATGACAGCCGTT-CAGAAAAACA----CCCCTTGGATCCCATTAGAAAGCCTATCAT-AGGTGCAAGTGGTGAAAC-A-TTAGTTGT-ATATGGTCGAACACAAATA-CTCATTAGAGTAGGGAATAAATCATATAA-CATT-ACA-GCTGCTATTGCTGACATCAA-CA-TTGATGGAGTTCTAGGACTGGACTT-CATGAGC-AG-T-AACAACTGC-ACGATCAATGTGGCTGTGAGAGAA---ATAAT-CATTGCGGG-GAAAACTATTA--AACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGC-A-GGAAAACGTG-CGAGAAA--TGTATGG--TCATGCCCGATTGCAATGAG---GAAA-GTAATACAAC---TGTTGGGT-GTAGCACCTTGGAA
gi|6 : TATAA-CATT-ACA-GATACTATTGCTGATATTAAATA-TGGATGTAGGTCTAGGACTGGACTTTCATGAGC-AG-A-AACAAATGC-ACGATCAATATGTCAGAAGAGAAAGACATAAA-TATCGCG-ATGAAACCTTTTG--AACTTCTTAAAAAAGCTGGGCATTG-TGA--GCCGCATTGGAAAACGTAGCAAGAAA--TGTAG-G--AAACACGCATTTACAATGAGGAAAATACGTACA---AC---TGTTGAGT-GTAGCACTTTGAAATTGCCTTTTGACGA-CGTCAATAGAAAG---GGAACAGACCTCTATC-TATTCTCCA-GAAAAA---CGGATGTTGA--AATCAGCAAAGTAAGGAGTTGGTTAGAGCAAAA-GGTGAGACCAGAAAGCACTGAAAGTGTCGTCG-GGA-GGACCGA--TGTTGGAAAGTCGCTTGTGGACCGA-AAGAGCAC-TTTTAAGAGGTTTAAGGATGATC-TACTCT-TAGA--AATTGGACTG-ATAAAGA-GGA-TCCAACCCTCC-AAGCTA-TGTGCCT--TA-AGCG-AGGAGACGACATATACTCAGTTG------TAGCCATGACTCATAAGAACTGGCA-GGTCACC-TT-GG-AGTAAC-A-AAGACT--TTAATTAAAAATTAGGCCAAGCATTTTACTTGTCCTGTGCTACAAAAAATATGC----CA-G-ACA-GTATTATAGCCGGCTGGTTGAG--CATGCCATTGAAATC-AAGAAC------AC-AAGACAAAAA--CATGAG-AGTACCAATGCAG-CTCGCAT--CGGGCTGGAACACCT---A-GGAACGCATAGCA-ATG-GATATTGTT-TG-AAACTCTCGCGCACCTCTATTAAATAACAGTTATCAAG--CGG-AAAATCTACCAAA--C-TA--CA--CATTTTGAGAGG-TTC------CTGTTGAGTCGCAAAACAATA-TC--A-AGT-TA---A--TTACA----AAGTTAGA-----TGTGGTTCAAA--GT-AAATCTTAAGGTA-TACATGTG
gi|23 : GCTGAACTTGC-CA-TGGATGGAATACTCAGTTTGGACTT-TATGCAC-AGAA-AACCATTGC-ACCATCAATCTACAAGAAG---AA---ATAATGCTTTGTGGA--AAACacaaatgcgtctcaaagaagacagggaactgccacaactttctgttttaaaaaaaaaactcaaatgatttgatacccagtaaagcaatagatcaatctgactcagaggtacacaggaataacgatagatgttgtgcgcccaaatagacgatagttttgagaaagaaaagttctaattcctgaaagcgagattacgaaaaccaccaagtggttatcaatttacgaaatcatattaagttttccatttcccttcaatatacaaatgctgttgaggaacagcaatgatacaaagctcatcagaaatgaaatcttgtaaatatttgaaagttcgtatcataattatcatttaaaattgtcattgcttgagttgtgcgagggactcatactttagatgaggcgctggtaatg
gi|3 : ctgtggtaCAATGAG---GAAA-GTAAC---ACAACTGCTGGGT-GTAGCACTTTGGAAATGACTGTTGACGA-CGT-AATAGAAGAAGAGGAG-AGACCCCTATC-TGTTCTCCA-GAAAAA---CG-ATGATGA--AATCAGCAAAGTTAGGAGTTGGTTGGAGC-AAAAGGTGAGACCAGAAAGC-CTGGAATTTTCTTCG-GGAGG-ACCGAT--GCTG--AAGTCTCT-GTGGTCCCA-AAGAGCAC-TTTT-AGAGGT-TAAGGATGATCT-ACTCTGTAGA--CGATTGACTGA-TAAAGAGGGA-TCC-GCCCT-CCAACCTATTGTGCCT--TCCAGCG-A-GAGACGACATATACTCAATTACATGTATAGCCATGAC-CATAA-CACT-GCA-GGTCACC-TT-GT-AGTGAC-C-AAGACT--TTAAGTAAAA--TAAGTCGGGCATTTTA-CTGGTATGGACTACAGAGAA-ATGT----CA-G-ACA-GTA-TATAGCCGGTTG--TGAAATC-TG-CA-TGAAATCAAAGAGC------CC-GA-ACAAAAC--TATGAG-AGCACCAATGCAG-CTCGTAG---GGGCTGGGACACCT---ATGGAACGCATAGCA-ATA-GATATTGTTGGG-GAACTCCCGCGCATCGACA-GAAACAACAGATAT
gi|10 : --TC-AGCGTA-GAAATG-----TCCTCCAGTA------TACTCATGAT-CA-GA-AGCC-GCA-GGTCAT--TTAGG-CATCAG-A-AAAACC--CTGAGCAAAA--TAAGACAGTCTTACTA-CTGGCCTGGGCTGCAGAAAG-ATGT----AC-G-CCA-ATA-CATTGCAGGCTG--TATGGTT-TG-C-------TCAAGGCGCAAGTATCC--A-ACAAAACTAAACG---CGCACCAATACAA----ATAGTTGGAGCCGG----TTTCCAATGGAACGAGTAGCACATG-GACATCCTT-GGTGAA---TTACCTA-CAACA-GA---AACAGATAattttagttgtttctgattattttaccaaatgggtggaggcatttgcaatgccaaatatggaagcagtggcagatatagttgcaaaagaagtcgttacaaggtttggggttccatgtgtcatacattcagactaaggaaagcaatttgaaggcaaattgttcacaaaaatgtgcaaagttctgaacattaaaaagaccggtacaacgccctaccgtcccccatcagacgggatggtggagcgattcaataagactatgctatcaatgcttcgcaccttggtggacgagaaccagatgaactgggacgggctcctcccattcattctgatgacatacagatctgtagaacaggagactacagaatgcagtccaaactatcttatgtttggaagagaagtagcaactcctgtggaggtcatgtaccgaatgcccaatttaatgaggaatattcccccaatcagtgggcatgggagttgaaagagaagctagaaactgctcacagctttttgagacagcacacaacacaagctatgctgagacagannnnnnnnnnnnnnnnnnnnnnntgctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttcccaggtatcaagtcgggaaatctccaaaacttacacagttttggagaggtccagttgctgttgaggcaaaactatcagatttaacttacaaagttagatgtggttcaaagggtaaatctcaagccatacatgtggacagaatgcgtctcaaaagactcaaaagaaggcagga
gi|18 : cgataatgacaaggatataagttggttggaaagcaagagcagtctcagtctaaagacctcaactcagaaggagtcgtgatcaaatttccttggacacagaagatatgctagttattctggatatgttgtttagatgactgaaaaataaagacaaagcagtgatccaatgaa--TC-AGCATA-GAAACG-----TCTTCCAGTA------TAGTCATGAT-CAGAA-GACA-GCA-GATCAT--TT-GG--GCATC-AGAAAACC--CTGAGCAAAA--TAAGACAGTCTTACTA-CTGGTCCGGGTTTCAGAAAG-ATGTACGCCA-ATACATGTA-CATTGCAGGTTG--TATGGTT-TG-Ccatctttagtaatatcagactattttaccaagtggacggaaaccattgctattgccaaagatcgagaaaagaactggtgcagatatatcattaaagaaacattgacaatattcggag
gi|1 : agcagtgattccaatgagCAAGTATCAA-GTCGGAAAATCCC-CCAAAGCTACA--CA--GTTTTGGAGAGGTTTCAT-TTG-TGTTGAG--GCAAAAA--T------A-ATCAGATTTAACTTACA----AAGTTAGATT---TGTGGTTCAAAGAGT-AAATC-CAAGTTATTACATGTGtcaaaacgcaagcatcca
gi|3 : cttatttgattagtacgccttcgcatgaagaaaatggaagaaagtcaagtcaatataagttcagaattacttagttcacattaaggataaaactgtcgtcagaattggtggaaaaactatcacctgccataattgtggtggctaagggccattaaaaaggggaatgataaacaaaatctaaaattgctgcgagtaaagtacactcaaagaaatcgaggttcgggtcagcaaatggtcgcagactaagtaatacgcggagaaaatggttaccttggagtactggactctttcttgagacctgttgcttgagaaaagtaaatgcctcattaatcgtcgataccggttgcatcactacaatcttgtctaaaggatttatgacacccgtcagaaaaacaaccccttgatccattagaaagcctatcataggttgcaatgggaaacattagttgtatatggtcgaacacaaattactcattagagtagggaataaatcatataaacatttacaagctgctattgctgacatcaacaattgaggagttctagacttgactcgtatgagccagttaacaactgccacgatcaatgtggctgtgaaaaataatcattgcggggaaaactattttaaactcttaaaaagggcattatggatgccgcagtaaaacgtgcgagaaatgtatggttcatgcccgattcaatgaggtaaaagaatacaactgttgggttgtagcaccttgaaaggactgttgacgagctaatagaagaggacagaccctatctgttctccatgaaaaaaaccgatgttgataaataagcaaagtaagagttggttggagcaaaagtgagaccagaaagccggaattgtccttcgggaggacgatgcgtaagtcttctgtggtcccaaagagcaccttttagaggttaaggtgatttactctgtagaaacaactgactgataaagagggaatccaccctccaactattgtgcctcttcagcgagagacgacatatactcaattatagccatgaccataaaactgcatggtcaccttggtagtacaaaagactggttaagtaaaatagggcaagcatttattggcctggctacaaagaagatgtcaggacatatatccggttttgaaatctcatgaaatcaaagagcccgaaacaaaactatgagatcaccaatgcagcctcgtaagggctgacatagcaatgctgagacagatagtcgttgtatgaccagagacttctctgcaatcttcaaattcctggtgatgaaagtttatgtgtattttccaaggCAGGTATCAA-GTCGGGAAA-TCT-CCAAAACT-TA--CACAGTTTTGGAGAGG-TCCAG-TTGCTGTTGAG--GCAAAAC--TA-TCA-G-ATT-T----AACTTACA----AAGTTAGA-----TGTGGTTCAAAGGGT-AAATCTCAAGCCA-TACAT---GTGGACAGAacgaatgtgtctcaaaagaagacaggaactgtcacataaaattatgttgaaaaagaaaactcagatgattttaccagagtaacagatcaatctggtttcagatgaagggtacacagattatgacgatacaagtctgagcaaatatacgctagtttgagaaagtaattgtctcattcctgaagcgagattaagaaaccaccaaagtggtatcacattatgaaacatataagtgtgtcatttccctgcaagaaaaataaggctgtgagaaacagcaacgataagagttaattcgctatatatatgatgcaaatatgaaatgttcaagatttaaaaaaatcatttgataacttgaccagtatcgat
gi|8 : caatgaggaaagtaacacaactgctgggtgtagcactttggaaatgactgttgacgacgtaatagaagaagaggagagacccctatctgttctccagaaaaacgatgatgaaatcagcaaagttaggagttggttggagcaaaaggtgagaccagaaagcctggaattttcttcgggaggaccgatgctgaagtctctgtggtcccaaagagcacttttagaggttaaggatgatctactctgtagacgattgactgataaagagggatccgccctccaacctattgtgccttccagcgagagacgacatatactcaattacatgtatagccatgaccataacactgcaggtcaccttgtagtgaccaagactttaagtaaaataagtcgggcattttactggtatggactacagagaaatgtcagacagtatatagccggttgtgaaatctgcatgaaatcaaagagcccgaacaaaactatgagagcaccaatgcagctcgtaggggctgggacacctatggaacgcatagcaatagatattgttggggaactcccgcgcatcgacagaaacaacagatatattttagttgtttctgattattttaccaaatgggtggaggcatttgcaatgccaaatatggaagcagtggcagatatagttgcaaaagaagtcgttacaaggtttggggttccatgtgtcatacattcagactaaggaaagcaatttgaaggcaaattgttcacaaaaatgtgcaaagttctgaacattaaaaagaccggtacaacgccctaccgtcccccatcagacgggatggtggagcgattcaataagactatgctatcaatgcttcgcaccttggtggacgagaaccagatgaactgggacgggctcctcccattcattctgatgacatacagatctgtagaacaggagactacagaatgcagtccaaactatcttatgtttggaagagaagtagcaactcctgtggaggtcatgtaccgaatgcccaatttaatgaggaatattcccccaatcagtgggcatgggagttgaaagagaagctagaaactgctcacagctttttgagacagcacacaacacaagctatgctgagacagannnnnnnnnnnnnnnnnnnnnnntgctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttccCAGGTATCAA-GTCGGGAAA-TCT-CCAAAACT-TA--CACAGTTTTGGAGAGG-TCCAG-TTGCTGTTGAG--GCAAAAC--TA-TCA-G-ATT-T----AACTTACA----AAGTTAGA-----TGTGGTTCAAAGGGT-AAATCTCAAGCCA-TACAT---GTGGACAGAatgcgtctcaaaagactcaaaagaaggcagga
gi|19 : gctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttccAGGTATCAA-GTCGGAAAA-TCC-CCAAAGCT-TA--CACAGTTTTGGAGAGG-TTCAT-TTGCTGTTGAG--GCAAAAA--TA-TCA-G-ATatgcgtctcaaaagactcaaaagaaggcaggaactgtcacatgaaagattctgtctgtagatgtgagagcgtctgtgtgattgatatcagagtgagtaacagatccaatactggttcagaagaagggtaaccacagggaattaacgatacgacgcctaatgagcaaacagattgatatttttgagataagatacaattgtactcattcctgaatttggattaaatgaaacacaaaagagtgttaatcagattttatgagaacatattaagtttttttcattgttcgtccagacgaaacaaaggcgtgagaaaacagcaacgatttgatgatgctttaagtcgtattatagatatgttgtaaatatttgaaatgctcagtcaattataaatcatttataacctgtcaagttgtaattatgcgatgacggcatatttttgattgaggcggttaat
gi|9 : tgctgagacagaagtcgttgtatgaccagagactctactggcaatcattcaatcctggtgatgaagtttatgtgtattttccaattgcaGTTGGAAAAGT-T-CCTAAACT-GAAATA--GTTCTAGAG-GG-TTTATATTG--TGTGAA--AGATAAA--TGATCTGGTATC-CA------CTACA----AGGTAAAT-----TGTTGTCCATACGG-AAAATCTCAAGCTA-TTCATGTt
gi|24 : gccttacatggaagctgtgaccaagctagattattggttcgaaaagtattgacaagatttttgaattccagcttcgttgcattcggataagggtaacaattcgaaggcaaatttttagaaaatgtgcaaacgtattacacattaagaagtaaaaaataagtccatattacttacaatgctgagatccttgttgatgagcataagtcaaactggaatgagtactaccatatgttttaatggcatagagatcggtggaacaagaatcaactggatttagccccaatcatcttatgttaagaagagaggttaggacacctaggacattgctttcgaaatgccttcccagatcacaatattcctttgcaacagtgggggtatctgatgtttaaaaaatgatcgaaatggcacacacatcgtgagagaaaatttcccttggctctgtttagaagaaaaatcttcaatgattcaaagctaagctgaaattcatttaagccgggagataaatctttgtaatatttccaaaattgctCAAACC--CG-CT--G-A-C-GA---AGTTTACATATAACTTTAAAACTTGTGTGGTTTAGAGGGT-GAATCTCAGTTTA-TTCATttgaccgcata
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GTACATAATAAAAACCCACACAACTCTGTACCACCCACAATCGGACGGAATATACCGGTGGCCGATATTTTTTCAGTATATATATCAACGACCATAATGGTAACTGGGACAAGCACCTTCCCTATGCAATATGATGACCTACAGATGTGCAGCTAGTCTACGAGACCACGGGTGCTACTCCAAATAAAATGACGCTGGGCCGTGAAATGTCTACACCCACTAGACATTGCGTACGAAATGCCACAGGAAATTAAACGTATTCCTCAAAATGCATGGGCATGGCATTTGCAGGAAAGATTGGAAGAAGCGCATGCTGCAGTTAAAGAAATTACAAAAGATAGCATCCAACGACAAAAGTGGAATCACGACAGAAAATTAAACTGGCAAACTTTCCATGCTGGTGATCTTGTGTGTTTACTTTCCAAATCGTAAGATTGGAATATCATCTAA
Unaligned ( gi|13 ): ATCTCGGTGAGCTCAATCGCTACTGATCAGAGACATTGAGGCTAAATGGCCTCAATACCGAAGTCGAACCCCAGCTTCCGTTGGACCACTCAACACCACGATGCCAAGTGATAAGCGCACGGAAATTGTCTTGCAAGGCGAGTCTGTATCACTACAATGAAATATGTTGCAAAACCAAAACTGAGTACACCTCTGGATAAAGATAAACGAAAATCTGTGAAATTCCAGTCAGATGATGCACAATACGACATGAGCAAATACCTACCTAAAGATGAGCAGTTCGAAAGCATGTCCACTTTGCATTGACTTCTAGATGACTTTAATGTAACAATGAGAAATAAAATGTGGATAAGAAAAAATGAACAAGAACGAGGTCGTGCTCACAATGATATACCATCTAGATTGCCGATGAAA
Unaligned ( gi|14 ): AATGTTGGGAAGAGAGGTCAGAACACCTTGACATTGCATTTAAAATTCCAGCAGCTTTGAAAAGAATGCCTATCCAACAATGGGTTTGGGAGCTCAAGGAAAAGCTGGAACTGGCGCAATCATTTGTGCGGGAAAATCATTAAATGCCATCGGTTCCATCCTACGACAAAAGAGTCTTTATGATACAAAATTAAATTGGCAAATCTTTAAAAAATGAGATGAATTATACATACACTTCCCACAATATGCCGAGAGGGAAGTCTCGTAGTAATTACGTTGACTCAATTTTGGCGGGGTCCTTTTGTAGTGGAAGAAAAGTGTTCTGAAGTGAATGGGCCTTACGGAAAATTTCAAATCATACATGTAGAGACCGCAT
Unaligned ( gi|16 ): CCTATAGGTCGGTAGAACATGAAACAACATGATGCAGTCTAAACTACTTAATGCTCGGAAGAGAAGTTGGAGCACCAATTGACCTCATGTACGAAATGCCAACCAGTATAAAGAGAATTCCAGAAAACCAATGGGCTTGGGAATTGAAGGAACGAATGGAGATTGCTCACAGAATAGCTAGACAGAATGCTAATGAGGCGATGCTACGACAGAAATCTTTGCATGATCATAAGCTTAACTGGCAAACATTTAAACCTGGTGATGAAGTATATGTA
Unaligned ( gi|17 ): CATCTTTTGGTTGGGGGGGTGGGGCACGGTATCTATTGAACAATGATCTGAGTGAGCTTCAAAGCTACTATAAGAGAAGATTAGGACAAATTAGTCAATTACGAAGTCGACATTCGTTAGAACCTCAAACTCGAATGCCAAAGTATCAGCACAGGTAATTTCTGGCAAGCGTATCTGTGATCACTACAATGAATCTGTTTTGGCAAGACCAAAACTCTGAGTAACCTTGAGGATAAAGGATTAAACGAAAAT
Unaligned ( gi|22 ): CAGATTATGAAACATAAAGTTTGCCATTTCTTTTGCAGAAGATGCCTGAAAGAACAAATGCTTTGAGAAAAAGCAACAATACGAGCTTAATTTGCTATTATAGATATGTTGTAAATATTTGAAATGCT
Unaligned ( gi|26 ): ACGACAAAAATGATATCGCGACAGAAAAATATACTGGCAAACCTTTCATGATGTATACGTTTACTTTCCAAAATGTAAAATTGGCACATTACCT
Unaligned ( gi|27 ): ATCTTTGTTTGTAAGGGTTATGAATCCTGGGTAATTTGAGCGATAATGAGCAGCTTTACAGTGAACTTACGCGTGCTCTCA
Alignments
lowQualScore : 44444 1 1 222 222 1 11 1111 1111 2 11 222222222 1 2222 111 111 1 1 111 11 111 22 222 11111 4444 2 111 1 1 111 1 11 2 1 1 1 22 22 11 1 1 1 111 1 11 1 1 11 1 2 11 1 111111 1111 222222 11 22 1 1 1 222
lowQualScore : 1 44444 0 0 6 1 0 99 99 777 3 6 6 6 7 9 777 6 3 6 3 66 00 1111 99 6 1 7 4444 0 6 55 6 77 5 5 0 5 5 88 666666666 9 9999 3 3 1 1 8 8 0 222 8 111 4 8 8 8 888 1 3 6 3 6 1 2 77 111 6 6 1 11 8 444 44 0 444 1 8 0 88888 1 2 0 3 6 6 3 6666 3 6 3 3 8 444 99 2 0 0 777 0 33 2 0 0 3 0 1 0 22 99 3 33 3 0 0 0 111 3 2 5 2 33 2 0 0 22 0 0 1 3 33 6 9 7 999999 6 3 6 6 6 77 99 6 99 99 1 6 6 6 4444 6 6 77 88 7 99 6 6 6 88 0 333333 44 8 8 8 11 22 0 4 8 8 8 8 0 66 6 0 0 6 5 1 0 5 77 4 77 8888 1 555 77 0 5 0 5 6
lowQualScore : . ..... . . . . . .. .. ... . . . . . . ... . . . . .. .. .... .. . . . .... . . .. . .. . . . . . .. ......... . .... . . . . . . . ... . ... . . . . ... . . . . . . . .. ... . . . .. . ... .. . ... . . . ..... . . . . . . . .... . . . . . ... .. . . . ... . .. . . . . . . . .. .. . .. . . . . ... . . . . .. . . . .. . . . . .. . . . ...... . . . . . .. .. . .. .. . . . . .... . . .. .. . .. . . . .. . ...... .. . . . .. .. . . . . . . . .. . . . . . . . . .. . .. .... . ... .. . . . . .
lowQualScore : 0 88888 0 8 7 0 0 22 22 333 2 7 7 7 3 3 333 7 5 7 3 77 33 7777 22 7 7 5 0000 0 7 88 7 99 7 7 1 7 7 88 777777777 2 6666 8 2 0 0 0 0 8 444 0 000 0 0 0 0 777 0 3 7 3 7 0 5 77 777 7 7 0 00 0 222 00 8 666 4 0 8 00000 4 8 6 8 7 7 2 5555 2 7 2 2 0 000 00 5 0 0 555 0 88 5 0 0 2 0 0 0 22 00 2 88 2 0 0 0 000 2 5 5 5 88 5 0 0 55 0 0 0 2 88 7 8 3 222222 7 2 7 7 7 77 88 7 22 22 0 7 7 7 2222 7 7 77 88 8 22 3 7 7 88 8 000000 44 0 0 0 66 22 6 6 0 0 0 0 0 00 5 2 0 7 7 6 1 7 00 3 99 0000 7 000 99 7 7 4 7 7
consensus : GCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGT-CCATGAAGANT-ATCA--TTAAGGA--TAAAACTGGTC-T-CGTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGCCAAGGGCCATTTAAAGGA-GGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAA-AGTACGAGCTCAAGAAAAATCAGGGGTTC--GTCAGCAAATG--TGC-AAACTAAAGGAATAACTGCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCC-TTTCAGAAAAACAAC--CTCCTTGGATCCCATTCGAAAACCAATCAT-AGG-TGCAAGTGGTGAAAC-G-TTAGTTG-TATATGGTCGAACACAAA-T-ACTCATTAGAGTAGGGAATAAATCNTAT-AACA-TTAC-AGCTGCTATTGCTGACATTAA-C-ATGGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACGATCAATGTGGCTG-AGGG---AGAAATAAT-CATTGCGGG-GAAANCTA--TTAAACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGCAA-GGAAAACGT-GCGAGAAATGTA-GG--TCATGCCCGATTACAATGAGG-AAAAGTAAT----ACAACTGTTGGG-TGTAGCACTTTGGAAATGACTGTTGACGA-CGT-AATAGAAGA---GGAN-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTGGAGCAAAAGGTGAGACCAGAAAGC-CTGGAATTGT-CNTCG-GGAGGGACCGAT-CGTTG--AAGTCTCTTGTGGTCCCA-AAGAGCA-CTTTTA-GAGGT-T-AAGGATGATCTTACTCTGTAG--ACGATTG-ACTG-ATAAAGAGGG-ATCCG-CCCTCCAANCTATTGTGC--CTTC-AGCG-AGAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCA-GGTCACC-TTGG-AGTAACA-AAGACT--CTAAGTAAAA--TAAGNCAGGCATTTTAC-TGGCCTGGGCTACAGA-AAG-ATGT----CA-G-ACA-GTA-TATAGCCGGTTG--TGAGATC-TG-CA-TGAAATCAAAGAGC------CCG-A-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAGAGGGCTGGGACACCTATGGAACGCATAGCA-ATG-GATA-TCGTT-GG-GAACTCTCGCGCACCGACA-GAAACAACAGGTATC-AAGTCGG-AAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAT-TTGCTGTTGAG--GCAAAAC--T-ATCAGATTT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCTA-TACATGTGGTGGACAGA
Reference ( family-2031 ) : GCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGNGTCTAAAGGATACATGTA--TGCAGAATGTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGT-CCATGAAGANT-ATCA--TTAAGGA--TAAAACTGGTC-T-CGTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGCCAAGGGCCATTTAAAGGA-GGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAA-AGTACGAGCTCAAGAAAAATCAGGGGTTC--GTCAGCAAATG--TGC-AAACTAANGGAATAAC-GCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCCGTTTCAGAAAAACAAC--CTCCTTGGATCCCATTNGAAAGCCNATCAT-AGG-TGCAAGTGGTGAAAC-G-TTAGTTG-TATATGGTCGAACACAAA-T-ACTCATTAGAGTAGGGAATAAATCATAT-AACA-TTAC-AGCTGCTATTGCTGACATTAA-C-ATGGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACGATCAATGTGGCTG-AGGG---AGAAATAAT-CATTGCGGG-GAAANCTA--TTAAACT-CTTAAAAAG--TGGGCATTGATGGATGCCGCAA-GGAAAACGT-GCGAGAAATGTA-NG--TCACGCCCGATTACAATGAGG-AAAAGTAATACA-ACAACTGTTGGG-TGTAGCACTTTGGAAATGACTGTTGACGAGCGT-AATAGAAGA---GGAN-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTGGAGCAAA-GGTGAGACCAGAAAGC-CTGGAATTGT-CNTCG-GGAGGGACCGAT-CGTTG--AAGTCTCTTGTGGTCCCA-AAGAGCA-CTTTTA-GAGGT-T-AAGGATGATCTTACTCTGTAG--ACGATTG-ACTG-ATAAAGAGGG-ATCCG-CCCTC-AANCTATTGTGC--CTTC-AGCGTAGAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCA-GGTCACC-TTGG-AGTAACA-AAGACT--TTAAGTAAAA--TAAGNCAGGCATTTTAC-TGGCCTGGGCTACAGA-AAA-ATGT----CA-G-ACA-GTA-CATAGCCGGTTG--TGAGGTC-TG-CA-TGAAATCAAAGAGC------CCG-A-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAGNGGGCTGGGACACCTATGGAACGCGTAGCA-ATG-GATA-TCGTT-GG-GAACTCTCGCGCACCGACA-GAAACAACAGGTATC-AAGTCGG-AAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TTCAT-TTGCTGTTGAG--GCAAAAC--T-ATCAGATCTAAACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCTA-TACATGTGGTGGACAGA
gi|1 : CA--TTAAGGA--TAAAACTG----T-CGTCAGAATTGGTGGAAAAACTATCACCT-GCCAT-AATTGTGGTGGCTAAGGGCCATTAAAAAG--GGGAATGATAAACAAAATCTAAAATTGCTGCGAGTAA-AGTAC--ACTCAA-AGAAATC-GAGGTTCGGGTCAGCAAATGGTCGC-AGACTAA-GTAAT-AC-GCGGAGAAAATGGTTACCTT--GGAGTA-CTGGACTCTTTCTTG--AGACCTGTTGCTTGAGAAAAGTAAATGCCT-CATTAATCGTCGATACCGGTTGCATCACT-ACAATCTTGTCT--AAA---------GGATTTATGACACCCG--TCAGAAAAACAAC--C-CCTT-GAT-CCATTAGAAAGCCTATCAT-AGGTTGCAA-TGG-GAAAC-A-TTAGTTG-TATATGGTCGAACACAAATT-ACTCATTAGAGTAGGGAATAAATCATATAAACATTTACAAGCTGCTATTGCTGACATCAA-CAATTGA-GGAGTTCTA-GACTTGACTCGTATGAGCCAGTTAACAACTGCCACGATCAATGTGGCT---GTG---AAAAATAAT-CATTGCGGG-GAAAACTATTTTAAACT-CTTAAAAA----GGGCATT-ATGGATGCCGC-A-GTAAAACGT-GCGAGAAATGTA-TGGTTCATGCCCGATT-CAATGAGGTAAAAG-AAT----ACAACTGTTGGGTTGTAGCACCTT-GAAAGGACTGTTGACGAGC-T-AATAGAAGA---GGAC-AGA-CCCTAT-CTGTTCTCCATGAAAAAAACCG-ATGTTGATAAATAAGCAAAGTAA-GAGTTGGTTGGAGCAAA-AGTGAGACCAGAAAGC-C-GGAATTGTCCTTCG-GGAGGA--CGATGCGT----AAGTCTTCTGTGGTCCCA-AAGAGCACCTTTTA-GAGGT-T-AAGG-TGAT-TTACTCTGTAGAAACAACTG-ACTG-ATAAAGAGGGAATCCA-CCCTC-CAACTATTGTGCCTCTTC-AGCG-AGAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCATGGTCACC-TTGGTAGTACAA-AAGACTGGTTAAGTAAAA--TAGGGCAAGCA-TTTAT-TGGCCT-GGCTACAAAGAAG-ATGT----CAGG-ACA--TA-TAT--CCGGTTT--TGAAATC-T--CA-TGAAATCAAAGAGC------CCGAA-ACAAAACTATGAG-ATCACCAATGCAGCCTCGTA-AGGGCT--GACA--TA-GCAATGCTGAG---ACA-GATAGTCGTT-G
gi|1 : cttatttgattagtacgccttcgcatgaagaaaatggaagaaagtcaagtcaatataagttcagaattacttagttcaCAAGTATC-AAGTCGG-AAAATCCCCCAAAGCTACACAGTTTTGGAGAGGTTTCAT-TTG-TGTTGAG--GCAAAAA--TAATCAGATTT-AACTTACAAAGTTAGATTTGTGGTTCAAAGAGT-AAATC-CAAGTTATTACATGTGGtatgaccagagacttctctgcaatcttcaaattcctggtgatgaaagtttatgtgtattttccaaggcaagtatcaagtcggaaaatcccccaaagctacacagttttggagaggtttcatttgtgttgaggcaaaaataatcagatttaacttacaaagttagatttgtggttcaaagagtaaatccaagttattacatgtggacgaatgtgtctcaaaagaagacaggaactgtcacataaaattatgttgaaaaagaaaactcagatgattttaccagagtaacagatcaatctggtttcagatgaagggtacacagattatgacgatacaagtctgagcaaatatacgctagtttgagaaagtaattgtctcattcctgaagcgagattaagaaaccaccaaagtggtatcacattatgaaacatataagtgtgtcatttccctgcaagaaaaataaggctgtgagaaacagcaacgataagagttaattcgctatatatatgatgcaaatatgaaatgttcaagatttaaaaaaatcatttgataacttgaccagtatcgat
gi|10 : cttatttgattagtacgccttcgcatgaagaaaatggaagaaagtcaagtcaatataagttcagaattacttagttcacattaaggataaaactgtcgtcagaattggtggaaaaactatcacctgccataattgtggtggctaagggccattaaaaaggggaatgataaacaaaatctaaaattgctgcgagtaaagtacactcaaagaaatcgaggttcgggtcagcaaatggtcgcagactaagtaatacgcggagaaaatggttaccttggagtactggactctttcttgagacctgttgcttgagaaaagtaaatgcctcattaatcgtcgataccggttgcatcactacaatcttgtctaaaggatttatgacacccgtcagaaaaacaaccccttgatccattagaaagcctatcataggttgcaatgggaaacattagttgtatatggtcgaacacaaattactcattagagtagggaataaatcatataaacatttacaagctgctattgctgacatcaacaattgaggagttctagacttgactcgtatgagccagttaacaactgccacgatcaatgtggctgtgaaaaataatcattgcggggaaaactattttaaactcttaaaaagggcattatggatgccgcagtaaaacgtgcgagaaatgtatggttcatgcccgattcaatgaggtaaaagaatacaactgttgggttgtagcaccttgaaaggactgttgacgagctaatagaagaggacagaccctatctgttctccatgaaaaaaaccgatgttgataaataagcaaagtaagagttggttggagcaaaagtgagaccagaaagccggaattgtccttcgggaggacgatgcgtaagtcttctgtggtcccaaagagcaccttttagaggttaaggtgatttactctgtagaaacaactgactgataaagagggaatccaccctccaactattgtgcctcttcagcgagagacgacatatactcaattatagccatgaccataaaactgcatggtcaccttggtagtacaaaagactggttaagtaaaatagggcaagcatttattggcctggctacaaagaagatgtcaggacatatatccggttttgaaatctcatgaaatcaaagagcccgaaacaaaactatgagatcaccaatgcagcctcgtaagggctgacatagcaatgctgagacagatagtcgttgtatgaccagagacttctctgcaatcttcaaattcctggtgatgaaagtttatgtgtattttccaaggTC-AGCGTAGAAATG-----TCCTCCAGTA------TACTCATGAT-CA-GA-AGCC-GCA-GGTCATT-TAGG-CATCAGA-AAAACC--CTGAGCAAAA--TAAGACAGTCTTACTAC-TGGCCTGGGCTGCAGA-AAG-ATGT----AC-G-CCA-ATA-CATTGCAGGCTG--TATGGTT-TG-C-------TCAAGGCGCAAGTATCC--A-ACAAAACTAAACG-CGCACCAATACAA-ATAGTTG-GAGCCGGT-TTCCAATGGAACGAGTAGCACATG-GACA-TCCTT-GGTGAA---TTACCTA-CAACA-GAAACAacgaatgtgtctcaaaagaagacaggaactgtcacataaaattatgttgaaaaagaaaactcagatgattttaccagagtaacagatcaatctggtttcagatgaagggtacacagattatgacgatacaagtctgagcaaatatacgctagtttgagaaagtaattgtctcattcctgaagcgagattaagaaaccaccaaagtggtatcacattatgaaacatataagtgtgtcatttccctgcaagaaaaataaggctgtgagaaacagcaacgataagagttaattcgctatatatatgatgcaaatatgaaatgttcaagatttaaaaaaatcatttgataacttgaccagtatcgat
gi|12 : cgataatgacaaggatataagttggttggaaagcaagagcagtctcagtctaaagacctcaactcagaaggagtcgtgatcaaatttccttggacacagaagatatgctagttattctggatatgttgtttagatgactgaaaaataaagacaaagcagtgatccaatgaaCA--TTAAGGACTTAAAACTGGTC----GGCAGTATGTGTCGAAAAAC-ATCACCTTGCCATTAATTGTGGTGGGCAAGGGCCATATAAAG-A-GGAATTG-TGAAGAA-ATCTAAAAATGCTGTGAGTAA--GTACG--CCCAAGAA----CAGAGGTT---GTCAGCAAATG--TGCCAAAC-AATGG--TAACTGCGA--TAAATG-TTACCTT-GG-AGTAACTGGACTCTTTTCTGGGAGACC-GTTG-TGGAGAAAG--AACTGCATGCATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAAAAAGGGGGGGAATTTATGACAACC-TTTCAGAAAAGAAACA-CTCCTTGGATCCCATTCGAAAATCAATCAC-AGG-TGCAAGTGGTGAAACTGTTTAGTTG-gatacatctttagtaatatcagactattttaccaagtggacggaaaccattgctattgccaaagatcgagaaaagaactggtgcagatatatcattaaagaaacattgacaatattcggag
gi|15 : gatgacgtaaaatggagaaacaatcaagtcaattgaggtccagcaatacttgatcaA---------GGATTTATGACAGCCGTT-CAGAAAAACA----CCCCTTGGATCCCATTAGAAAGCCTATCAT-AGG-TGCAAGTGGTGAAAC-A-TTAGTTG-TATATGGTCGAACACAAA-T-ACTCATTAGAGTAGGGAATAAATCATAT-AACA-TTAC-AGCTGCTATTGCTGACATCAA-C-ATTGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-TAACAACTG-CACGATCAATGTGGCTG-TGAG---AGAAATAAT-CATTGCGGG-GAAAACTA--TTAAACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGC-A-GGAAAACGT-GCGAGAAATGTATGG--TCATGCCCGATTGCAATGAGG--AAAGTAAT----ACAACTGTTGGG-TGTAGCACCTTGGAA
gi|18 : TC-AGCATAGAAACG-----TCTTCCAGTA------TAGTCATGAT-CAGAA-GACA-GCA-GATCAT--TTGG--GCATCAGAAAACC--CTGAGCAAAA--TAAGACAGTCTTACTAC-TGGTCCGGGTTTCAGA-AAG-ATGTACGCCA-ATACATGTA-CATTGCAGGTTG--TATGGTT-TG-C
gi|19 : agcagtgattccaatgagAGGTATC-AAGTCGG-AAAATCCCCAAAGCTTACACAGTTTTGGAGAGG-TTCAT-TTGCTGTTGAG--GCAAAAA--T-ATCAGATtcaaaacgcaagcatcca
gi|2 : tgctgagacagaagtcgttgtatgaccagagactctactggcaatcattcaatcctggtgatgaagtttatgtgtattttccaattgcaGCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATA-AGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACTCCAGT-CCATGAAAAAT-ATCA--TTAAGGA--TAAAACTAGTC-TTCATCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-A-TTGTGGTGGCCAAGGGCCATTTAAAAGAAGGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAACAGTACGAGCTCAAGAAAAATCAGGGGTCC--GTCAGCAAAGG--TGC-AAACTAAAGGAATGAC-G-GGAGTAAATGGTTACCTTCGGGCGTA-CTGGATTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCCTTTTCAGAAAAACAACTACTCCTTGGATTCCATTCGAAAACCAATCACGAGG-TGCAAGTGGTGTAAC-G-TTAGTTGTTATATGGTCGAACACAAA-TAACTAATTAGAGTAGGGAATAAATCTTAT-AACA-TTAC-AGCTGCTATTGCTGACATTAA-C-ATGGATAGAGTTTTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-TACGATCAATGTGTCAG-AGGG---AAAAATAAT-CATTGCGGATGAAACCCA--TTCGACT-CTTAAAAAG--TGGACATTAATGGATGCCATAA-GAAAAACAT-CCAAGAAATA-A-TG--TTATACCCAAGTACAATGA-G-AACAGTAAT-------ACTCTTGGG-TGTAGCACTTTGGAAATGACTGTTGACGAACGT-AATAGAAGA---GGAG-AGACCCCTATCCTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGCGTTGGTTGGAGCAAA-GGTGAGACCAGAAAGC-CTGGAATTGT-CATCGAGGAGGGACCGAT-TGTTG--AAATCTCTTGTGGTCCCACAAGAGCA-CTTTTA-GAGGTGT-AAGGATGATCTTACTCTGTAG--ACGATGG-ACTGAATAAAGAGGG-ATCCG-CCCTC-AATCTATTGTGC--CTTC-AGCG-AGAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCA-GGTCACCGTTGG-AGTGACA-AAGACT--CTAAGTAAAA--TAAGGCAAGCATTTTAT-TGGCCTGGGCTACAAA-GAA-ATGT----CA-G-ACA-GTA-GATAGCCGGTTG--TGAGATC-TG-CA-TGAAATCAAAGAGC------CCA-A-ACAAAACAATGAGAAGCATCAATACAG-CGCGTAGAGGGCTGGAACACTTATGGAACGCATAGCA-ATGTGATG-TTGTT-AG-GAACACTCGCGCACCGACA-GAAATAACAGGTATCAAAGTCGGAAAAATCTCCAAAGCTT--ACAGTTTTGGAGAGG-TCCAT-TTGCTTTTGAG--GCAAAAC--T-GTC-GATCGAAACTTACAAGGTTAGA--TGTGGTTCAAAGGGTAAAATCTCAAGTTA-TACATGTGGTGGACAGAt
gi|21 : CTGTGGAACTCGAGGCATATTTCGAGGCAGTGGGAAAACTTCGAGAGTCTAAAGGATACATGTAGTTGCAAATCGTCGATACCGCTGACAATACACCACTTAAAGAAACCGACAACATACACTTCATCTTGGATGAGTTACGCCAGT-CCATGAAGActcatc
gi|23 : GCTGAACTTGC-C-ATGGATGGAATACTCAGTTTGGACTT-TATGCA-CAGAAAACCATTG-CACCATCAAT----CTACAAGA---AGAAATAATGCTTTGTGGA-AAA
gi|24 : ctgtggtaAACTTTAAAACTTG----TGTGGTTTAGAGGGT-GAATCTCAGTTTA-TTCATc
gi|25 : acgatcagaaactctactgacagtcattcaaacccgctgacgaagtttacatat--AGACC-GTTG-TTGAGAAA-GTAAATGCCT-CATAACTCGTGGATACCGG-TGCATTACTGACAATGTTGTCTAAAAA---------GGATTTATGACAGCC-TTTCAGTAAAAtttg
gi|3 : CAATGAGG-AAA-GTAACACA-AC---TGCTGGG-TGTAGCACTTTGGAAATGACTGTTGACGA-CGT-AATAGAAGAAGAGGAG-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGATG--AAATCAGCAAAGTTAGGAGTTGGTTGGAGCAAAAGGTGAGACCAGAAAGC-CTGGAATTTT-CTTCG-GGAGG-ACCGAT--GCTG--AAGTCTCT-GTGGTCCCA-AAGAGCA-CTTTTA-GAGGT-T-AAGGATGATCT-ACTCTGTAG--ACGATTG-ACTG-ATAAAGAGGG-ATCCG-CCCTCCAACCTATTGTGC--CTTCCAGCG-AGAGACGACATATACTCAATTACATGTATAGCCATGAC-CATAA-CACT-GCA-GGTCACC-TTGT-AGTGACC-AAGACT--TTAAGTAAAA--TAAGTCGGGCATTTTAC-TGGTATGGACTACAGA-GAA-ATGT----CA-G-ACA-GTA-TATAGCCGGTTG--TGAAATC-TG-CA-TGAAATCAAAGAGC------CCG-A-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAG-GGGCTGGGACACCTATGGAACGCATAGCA-ATA-GATA-TTGTTGGG-GAACTCCCGCGCATCGACA-GAAACAACAGATAT
gi|3 : CAGGTATC-AAGTCGG-GAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAG-TTGCTGTTGAG--GCAAAAC--T-ATCAGATTT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCCA-TACAT---GTGGACAGAattttagttgtttctgattattttaccaaatgggtggaggcatttgcaatgccaaatatggaagcagtggcagatatagttgcaaaagaagtcgttacaaggtttggggttccatgtgtcatacattcagactaaggaaagcaatttgaaggcaaattgttcacaaaaatgtgcaaagttctgaacattaaaaagaccggtacaacgccctaccgtcccccatcagacgggatggtggagcgattcaataagactatgctatcaatgcttcgcaccttggtggacgagaaccagatgaactgggacgggctcctcccattcattctgatgacatacagatctgtagaacaggagactacagaatgcagtccaaactatcttatgtttggaagagaagtagcaactcctgtggaggtcatgtaccgaatgcccaatttaatgaggaatattcccccaatcagtgggcatgggagttgaaagagaagctagaaactgctcacagctttttgagacagcacacaacacaagctatgctgagacagannnnnnnnnnnnnnnnnnnnnnntgctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttcccaggtatcaagtcgggaaatctccaaaacttacacagttttggagaggtccagttgctgttgaggcaaaactatcagatttaacttacaaagttagatgtggttcaaagggtaaatctcaagccatacatgtggacagaatgcgtctcaaaagactcaaaagaaggcagga
gi|4 : caatgaggaaagtaacacaactgctgggtgtagcactttggaaatgactgttgacgacgtaatagaagaagaggagagacccctatctgttctccagaaaaacgatgatgaaatcagcaaagttaggagttggttggagcaaaaggtgagaccagaaagcctggaattttcttcgggaggaccgatgctgaagtctctgtggtcccaaagagcacttttagaggttaaggatgatctactctgtagacgattgactgataaagagggatccgccctccaacctattgtgccttccagcgagagacgacatatactcaattacatgtatagccatgaccataacactgcaggtcaccttgtagtgaccaagactttaagtaaaataagtcgggcattttactggtatggactacagagaaatgtcagacagtatatagccggttgtgaaatctgcatgaaatcaaagagcccgaacaaaactatgagagcaccaatgcagctcgtaggggctgggacacctatggaacgcatagcaatagatattgttggggaactcccgcgcatcgacagaaacaacagatatattttagttgtttctgattattttaccaaatgggtggaggcatttgcaatgccaaatatggaagcagtggcagatatagttgcaaaagaagtcgttacaaggtttggggttccatgtgtcatacattcagactaaggaaagcaatttgaaggcaaattgttcacaaaaatgtgcaaagttctgaacattaaaaagaccggtacaacgccctaccgtcccccatcagacgggatggtggagcgattcaataagactatgctatcaatgcttcgcaccttggtggacgagaaccagatgaactgggacgggctcctcccattcattctgatgacatacagatctgtagaacaggagactacagaatgcagtccaaactatcttatgtttggaagagaagtagcaactcctgtggaggtcatgtaccgaatgcccaatttaatgaggaatattcccccaatcagtgggcatgggagttgaaagagaagctagaaactgctcacagctttttgagacagcacacaacacaagctatgctgagacagannnnnnnnnnnnnnnnnnnnnnntgctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttccGCTGTGGAACTCCAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGGCTAAAGGATACATG------CAGAATGTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGTCCCATGAAGAatgcgtctcaaaagactcaaaagaaggcagga
gi|4 : ttggggcagcggtgggatcatattgaacaatgaatctcagtgagctcaacgctactataagagaaattgaggctaaattaggctcaatacgaagtcgcaactccgttagaccatcaacacctcgagtgccaaagtatcagagcacggaattttctgcatgcgattctggtatcactacaatgatatctgttgcaagaaccaaatctgagtacacctgaggataaagataaacgaaaatctgtgaaatttcagtcagatgatgcaaaatacgacctgagcaaatacctacctaaagatgagcagctcgagagcatgtccactttgcattgcacctctagagacattaatgtaacaatgagaaataaaacgcggaaaagaacaaatgagcaagaacgagctcgtgctcaaaatgatataccatctagattgccgataaaatctgaggagcctatgcgtataaaagtaaagcctgctacttatgatggtaccacaccatggcttgatttcagatctcatttgaggcgtgcgctaagcttggacgatggagtgaggaggagaaaggtctctatctttctatgtccttacgagggctggcacaagggatcctaggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaaaaccgctttgctcctcccgatcaaatggaactttataggatacaactgagggagagagaacaggaagcgtccgagtcattaccagaactcggacagcatattaaggcggctcacaaatctcgcctaccctactgtccctgctgatggcgagaaacgctgtcaaaagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtattaagcaggcaaggcctgttaatctcaacgatgcgttaaacacAGT-CCA-GAATACTTATCACATTAAGGA--TAAAACTAGTCGT-CG--AGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGC-AAGGACCATTTAAAGG---GGAATG-TAACAAATCT--AAAAATGCTGCGAGTAA-AGTACAGGCTCAAGAAA--TCAGGG-TTC--GTCGGCAAATG--TGC-AAACTAAAGGTA-AACTGCGGAGTAAATGGTTACTT---GGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGGAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTaaaggaagaaaagatcaagtcaattaagtccagaatacttatcacattaaggataaaactagtcgtcgagaattggaggaaaaacatcacctgccataattgtggtggcaaggaccatttaaaggggaatgtaacaaatctaaaaatgctgcgagtaaagtacaggctcaagaaatcagggttcgtcggcaaatgtgcaaactaaaggtaaactgcggagtaaatggttacttggagtactggactctttcttgagaccgttgttgaggaaagtaaatgcatcattactcgtcgataccggtgcatcactgacaatcttgt
gi|5 : ttggggcagcggtgggatcatattgaacaatgaatctcagtgagctcaacgctactataagagaaattgaggctaaattaggctcaatacgaagtcgcaactccgttagaccatcaacacctcgagtgccaaagtatcagagcacggaattttctgcatgcgattctggtatcactacaatgatatctgttgcaagaaccaaatctgagtacacctgaggataaagataaacgaaaatctgtgaaatttcagtcagatgatgcaaaatacgacctgagcaaatacctacctaaagatgagcagctcgagagcatgtccactttgcattgcacctctagagacattaatgtaacaatgagaaataaaacgcggaaaagaacaaatgagcaagaacgagctcgtgctcaaaatgatataccatctagattgccgataaaatctgaggagcctatgcgtataaaagtaaagcctgctacttatgatggtaccacaccatggcttgatttcagatctcatttgaggcgtgcgctaagcttggacgatggagtgaggaggagaaaggtctctatctttctatgtccttacgagggctggcacaagggatcctaggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaaaaccgctttgctcctcccgatcaaatggaactttataggatacaactgagggagagagaacaggaagcgtccgagtcattaccagaactcggacagcatattaaggcggctcacaaatctcgcctaccctactgtccctgctgatggcgagaaacgctgtcaaaagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtattaagcaggcaaggcctgttaatctcaacgatgcgttaaacacgctgtggaactccaggcatatttcaaggcagagggaaaacttcgagcggctaaaggatacatgcagaatgtcaatacagctgacaatgcaccacttaaagaaactgacgacatacactctattttggatgagttacgccagtcccatgaagaaaaggaagaaaagatcaagtcaattaGCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATA-AGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACTCCAGT-CCATGAAAAAT-ATCA--TTAAGGA--TAAAACTAGTC-TTCATCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-A-TTGTGGTGGCCAAGGGCCATTTAAAAGAAGGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAACAGTACGAGCTCAAGAAAAATCAGGGGTCC--GTCAGCAAAGG--TGC-AAACTAAAGGAATGAC-G-GGAGTAAATGGTTACCTTCGGGCGTA-CTGGATTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGT
gi|6 : catatctgttttggtggcagtggtgggaatcatattgaacatgaatttcagtgagtcaacgctactataagagaaattgaggccaaattagtcacatacgaagtcgacactccgtatagaccacatcaaacaccacgagtgccaaagtatcagagcacggaattttctgcatgcagttctggtatcactacaatgaaacagttgcaagaccaaatctgagtacaaccttgaggataaagataaacgaaaatctgggaaatttcagtcagatgatgcaaaatacgacactgagaaataccttacctaaagatgagcagctcgaaagcttgcccactttgcatcgacctctagatgacgttaatgtaacaatgagaaataaaacgcgaaaagaacatgtgagcaagaacgaactcgtgctcaaaaatgatatagcatctagattgccgatgaaatctgaggagtctatgcgtataaaagtgaagcctgctacttatagatggtacacacaccatggcttgatttcagatctcaacttttgaggcgtgcgctaagcttagacgatggagtgaggaggagaaaggtctctatctttatttgtccttacgagggctggcacaagggatgcataggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaatgacgccctttgctcctcccgatcaactttataggatacaaactgagggagagacaacagaaagcgtccgagtcatttgccagaactcggacagcatataagacggctcacaaatctcgcctaccctactgtccctgctgatgtgcaagaaacgctgtccaagagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtatcaagcaggcaggcctcttaatctcaacgatgccgttagacaccTAT-AACA-TTAC-AGATACTATTGCTGATATTAAAT-ATGGATGTAGGTCTAGGACTGGACTTTCATGAG-CAG-AAACAAATG-CACGATCAATATGTCAG-AAGAGAAAGACATAAA-TATCGCGAT-GAAACCTT--TTGAACTTCTTAAAAAAGCTGGGCATTG-TGA--GCCGCATTGGAAAACGTAGCAAGAAATGTA-GG--AAACACGCATTTACAATGAGG-AAAA----TACGTACAACTGTTGAG-TGTAGCACTTTGAAATTGCCTTTTGACGA-CGTCAATAGAAAG---GGAACAGACCTCTAT-CTATTCTCCA-GAAAAA---CGGATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTAGAGCAAAAGGTGAGACCAGAAAGCACTGAAAGTGT-CGTCG-GGAGG-ACCGAT--GTTGGAAAGTCGCTTGTGGACCGA-AAGAGCA-CTTTTAAGAGGT-TTAAGGATGATCT-ACTCT-TAG--A-AATTGGACTG-ATAAAGAGG--ATCCAACCCTCCAAGCTAT-GTGC--CTTA-AGCGAGGAGACGACATATACTCAGTTG------TAGCCATGACTCATAAGAACTGGCA-GGTCACC-TTGG-AGTAACA-AAGACT--TTAATTAAAAATTAGGCCAAGCATTTTACTTGTCCTGTGCTACAAA-AAATATGC----CA-G-ACA-GTATTATAGCCGGCTGGTTGAG--CATGCCATTGAAATC-AAGAAC------ACA-AGACAAAAACATGAG-AGTACCAATGCAG-CTCGCATCGGGCTGGAACACCTA-GGAACGCATAGCA-ATG-GATA-TTGTT-TG-AAACTCTCGCGCACCTCTATTAAATAACAGTTATC-AAG-CGG-AAAATCTACCAAAC-TACACA-TTTT-GAGAGG-TTC------CTGTTGAGTCGCAAAACAAT-ATCAAGT-TAA--TTACAAAGTTAGA--TGTGGTTCAAA--GT-AAATCTTAAGGTA-TACATGTGG
gi|7 : TATTTCAAGGGAGAGGGAAGACTTCGAGAGTCTAAAGGATACATG------CAGAATGTCAATACAGCTGGCAATGTACCACTTAAAGAAACTGACGACATACACTCTA-TTTAGATGAGTTATGCCAGT-CCATGAAGACT-ATacaaatgcgtctcaaagaagacagggaactgccacaactttctgttttaaaaaaaaaactcaaatgatttgatacccagtaaagcaatagatcaatctgactcagaggtacacaggaataacgatagatgttgtgcgcccaaatagacgatagttttgagaaagaaaagttctaattcctgaaagcgagattacgaaaaccaccaagtggttatcaatttacgaaatcatattaagttttccatttcccttcaatatacaaatgctgttgaggaacagcaatgatacaaagctcatcagaaatgaaatcttgtaaatatttgaaagttcgtatcataattatcatttaaaattgtcattgcttgagttgtgcgagggactcatactttagatgaggcgctggtaatg
gi|7 : CA--TTAAGGA--TAAAACTGGTC----GTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGC-AAGGGCCATTTAAAG-A-GGGAATG-TAAAAAATCT--GAAAATGCTGTGAGTAA-AGTACGAGCCCAAGAAAA-TCAGGGGT-C--ATCACCAAATG--TGC-AAACCAATTG--TAACTGCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGGCTCTTTCTTG--AGACA-GTTG-TGGAAAAAAGTAAATGCAT-CATTAATCGTCGATACCGG-TGCATCACTGACAATTTTGTCT-AAAA---------GGATTTATGACAGCC-TTTCAGAAAAACA----CTCCTTGGATCCCATTCGAAAACCAATCAT-ATG-TGCAAGTGGTGAATC-G-TAAGTTG-TATATGGTCGAACACAAA-T-ACTCATTAGAGTAGGGAATAAATCTTAT-AGCA-TTAC-AGTTGCTATTGCTAACATTAA-T-ATGGATGGGGTTTTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACAATCAATGTGGCTG-AGAG---AGAAATGAT-CATTGCGGG-CAAAGCTA--TTAAACT-CTTAGAATG--TGGGCATT-ATGGATGCCAC-A-GAAAAACAT-ACAATAAACGTAGGG--TTATGTCCGAGTACAATGA-G-AAAAGTAAT----ACAACTGTAGGG-TGTAGCACTTTGGATATGACTATTGACGA-CAT-AATAGAAGA---GGAC-AGggaggaaaagatcaattcatttgactgatttgaggtccaaattacttatcacattaaggataaaactggtcgtcagaattggaggaaaaacatcacctgccataattgtggtggcaagggccatttaaagagggaatgtaaaaaatctgaaaatgctgtgagtaaagtacgagcccaagaaaatcaggggtcatcaccaaatgtgcaaaccaattgtaactgcggagtaaatggttaccttgggagtactgggctctttcttgagacagttgtggaaaaaagtaaatgcatcattaatcgtcgataccggtgcatcactgacaattttgtctaaaaggatttatgacagcctttcagaaaaacactccttggatcccattcgaaaaccaatcatatgtgcaagtggtgaatcgtaagttgtatatggtcgaacacaaatactcattagagtagggaataaatcttatagcattacagttgctattgctaacattaatatggatggggttttaggactggacttcatgagcagaaacaactgcacaatcaatgtggctgagagagaaatgatcattgcgggcaaagctattaaactcttagaatgtgggcattatggatgccacagaaaaacatacaataaacgtagggttatgtccgagtacaatgagaaaagtaatacaactgtagggtgtagcactttggatatgactattgacgacataatagaagaggacag
gi|8 : tatttcaagggagagggaagacttcgagagtctaaaggatacatgcagaatgtcaatacagctggcaatgtaccacttaaagaaactgacgacatacactctatttagatgagttatgccagtccatgaagactatggaggaaaagatcaattcatttgactgatttgaggtccaaattacttatcaCAGGTATC-AAGTCGG-GAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAG-TTGCTGTTGAG--GCAAAAC--T-ATCAGATTT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCCA-TACAT---GTGGACAGA
gi|9 : gctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttccGTTGG-AAAAGTTCCTAAACTGAAATAGTTCTAGAG-GG-TTTATATTG-TGTGAAA--GATAAAT--G-ATCTGGTATCCACT-ACAAGGTAAAT--TGTTGTCCATACGGA-AAATCTCAAGCTA-TTCATGatgcgtctcaaaagactcaaaagaaggcaggaactgtcacatgaaagattctgtctgtagatgtgagagcgtctgtgtgattgatatcagagtgagtaacagatccaatactggttcagaagaagggtaaccacagggaattaacgatacgacgcctaatgagcaaacagattgatatttttgagataagatacaattgtactcattcctgaatttggattaaatgaaacacaaaagagtgttaatcagattttatgagaacatattaagtttttttcattgttcgtccagacgaaacaaaggcgtgagaaaacagcaacgatttgatgatgctttaagtcgtattatagatatgttgtaaatatttgaaatgctcagtcaattataaatcatttataacctgtcaagttgtaattatgcgatgacggcatatttttgattgaggcggttaat
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTACATAATAAAAACCCACACAACTCTGTACCACCCACAATCGGACGGAATATACCGGTGGCCGATATTTTTTCAGTATATATATCAACGACCATAATGGTAACTGGGACAAGCACCTTCCCTATGCAATATGATGACCTACAGATGTGCAGCTAGTCTACGAGACCACGGGTGCTACTCCAAATAAAATGACGCTGGGCCGTGAAATGTCTACACCCACTAGACATTGCGTACGAAATGCCACAGGAAATTAAACGTATTCCTCAAAATGCATGGGCATGGCATTTGCAGGAAAGATTGGAAGAAGCGCATGCTGCAGTTAAAGAAATTACAAAAGATAGCATCCAACGACAAAAGTGGAATCACGACAGAAAATTAAACTGGCAAACTTTCCATGCTGGTGATCTTGTGTGTTTACTTTCCAAATCGTAAGATTGGAATATCATCTAA
Unaligned ( gi|13 ): ATCTCGGTGAGCTCAATCGCTACTGATCAGAGACATTGAGGCTAAATGGCCTCAATACCGAAGTCGAACCCCAGCTTCCGTTGGACCACTCAACACCACGATGCCAAGTGATAAGCGCACGGAAATTGTCTTGCAAGGCGAGTCTGTATCACTACAATGAAATATGTTGCAAAACCAAAACTGAGTACACCTCTGGATAAAGATAAACGAAAATCTGTGAAATTCCAGTCAGATGATGCACAATACGACATGAGCAAATACCTACCTAAAGATGAGCAGTTCGAAAGCATGTCCACTTTGCATTGACTTCTAGATGACTTTAATGTAACAATGAGAAATAAAATGTGGATAAGAAAAAATGAACAAGAACGAGGTCGTGCTCACAATGATATACCATCTAGATTGCCGATGAAA
Unaligned ( gi|14 ): AATGTTGGGAAGAGAGGTCAGAACACCTTGACATTGCATTTAAAATTCCAGCAGCTTTGAAAAGAATGCCTATCCAACAATGGGTTTGGGAGCTCAAGGAAAAGCTGGAACTGGCGCAATCATTTGTGCGGGAAAATCATTAAATGCCATCGGTTCCATCCTACGACAAAAGAGTCTTTATGATACAAAATTAAATTGGCAAATCTTTAAAAAATGAGATGAATTATACATACACTTCCCACAATATGCCGAGAGGGAAGTCTCGTAGTAATTACGTTGACTCAATTTTGGCGGGGTCCTTTTGTAGTGGAAGAAAAGTGTTCTGAAGTGAATGGGCCTTACGGAAAATTTCAAATCATACATGTAGAGACCGCAT
Unaligned ( gi|16 ): CCTATAGGTCGGTAGAACATGAAACAACATGATGCAGTCTAAACTACTTAATGCTCGGAAGAGAAGTTGGAGCACCAATTGACCTCATGTACGAAATGCCAACCAGTATAAAGAGAATTCCAGAAAACCAATGGGCTTGGGAATTGAAGGAACGAATGGAGATTGCTCACAGAATAGCTAGACAGAATGCTAATGAGGCGATGCTACGACAGAAATCTTTGCATGATCATAAGCTTAACTGGCAAACATTTAAACCTGGTGATGAAGTATATGTA
Unaligned ( gi|17 ): CATCTTTTGGTTGGGGGGGTGGGGCACGGTATCTATTGAACAATGATCTGAGTGAGCTTCAAAGCTACTATAAGAGAAGATTAGGACAAATTAGTCAATTACGAAGTCGACATTCGTTAGAACCTCAAACTCGAATGCCAAAGTATCAGCACAGGTAATTTCTGGCAAGCGTATCTGTGATCACTACAATGAATCTGTTTTGGCAAGACCAAAACTCTGAGTAACCTTGAGGATAAAGGATTAAACGAAAAT
Unaligned ( gi|20 ): TTTGCCATTTCTTTTGCAGAATATGCCTACAAGAACAAATGTTGTGAGAAACAGCAATGATACGAGCTCAACATTCGTAATGAATATCTTGTAATATTTGAAATGCTCCTATTAAATTTCATTTTATAAATTTTCATTGTTGAGTTTATGCGAGCACG
Unaligned ( gi|22 ): CAGATTATGAAACATAAAGTTTGCCATTTCTTTTGCAGAAGATGCCTGAAAGAACAAATGCTTTGAGAAAAAGCAACAATACGAGCTTAATTTGCTATTATAGATATGTTGTAAATATTTGAAATGCT
Unaligned ( gi|26 ): ACGACAAAAATGATATCGCGACAGAAAAATATACTGGCAAACCTTTCATGATGTATACGTTTACTTTCCAAAATGTAAAATTGGCACATTACCT
Unaligned ( gi|27 ): ATCTTTGTTTGTAAGGGTTATGAATCCTGGGTAATTTGAGCGATAATGAGCAGCTTTACAGTGAACTTACGCGTGCTCTCA
Alignments
lowQualScore : 222222 1 1 222 222 1 11 1111 1 11 222222222 2222 111 1 1 1 1 1 111 11 111 222 2 111 1 1 111 1 11 11 111 11 11 33333333 1 11 11 1 111111 1111 222222 11 22 1 1 1
lowQualScore : 222222 0 0 6 1 0 99 99 777 3 6 6 6 9 6 333 6 3 6 3 66 00 1111 99 6 1 1 9 6 55 6 77 5 5 0 5 5 88 666666666 1 6 9999 3 3 1 8 8 0 222 0 0 0 1 8 8 8 888 1 3 6 3 6 1 2 77 111 6 6 1 11 8 444 8 0 444 1 8 0 4 8 1 0 3 6 6 6 6 8 8 444 99 2 0 0 777 0 33 2 11 0 0 8 444 8 8 0 11 8 1 8 00 11 66666666 0 1 6 8 8 8 8 0 666 5 11 3 8 8 5 8 8 8 11 11 6 3 6 7 999999 6 3 6 6 6 77 99 6 99 99 1 6 6 6 4444 6 6 77 6 7 99 4 6 6 88 0 333333 44 8 8 8 00 22 0 8 8 8 8 0 66 6 0 0 6 5 1 0 5 77 4 77 8888 1 5 5 77 0 5 0 5 6
lowQualScore : ...... . . . . . .. .. ... . . . . . . ... . . . . .. .. .... .. . . . . . .. . .. . . . . . .. ......... . . .... . . . . . . ... . . . . . . . ... . . . . . . . .. ... . . . .. . ... . . ... . . . . . . . . . . . . . . ... .. . . . ... . .. . .. . . . ... . . . .. . . . .. .. ........ . . . . . . . . ... . .. . . . . . . . .. .. . . . . ...... . . . . . .. .. . .. .. . . . . .... . . .. . . .. . . . .. . ...... .. . . . .. .. . . . . . . .. . . . . . . . . .. . .. .... . . . .. . . . . .
lowQualScore : 666666 0 8 7 0 0 22 22 333 2 7 7 7 3 7 333 7 5 7 3 77 33 7777 22 7 7 7 8 7 88 7 99 7 7 1 7 7 88 777777777 0 7 6666 8 2 4 0 0 8 444 0 0 0 0 0 0 0 777 0 3 7 3 7 0 5 77 777 7 7 0 00 0 222 0 8 666 4 0 8 0 0 4 6 8 7 7 7 7 0 0 000 00 5 0 0 555 0 88 5 00 8 8 0 000 0 0 8 44 0 0 0 22 00 66666666 8 4 0 0 0 0 0 8 666 0 00 2 0 0 0 0 0 8 66 00 7 3 7 3 222222 7 2 7 7 7 77 88 7 22 22 0 7 7 7 2222 7 7 77 7 8 22 2 7 7 88 8 000000 44 0 0 0 44 22 6 0 0 0 0 0 00 5 2 0 7 7 6 1 7 00 3 99 0000 7 0 7 99 7 7 4 7 7
consensus : GCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGT-CCATGAAGANT-ATCA--TTAAGGA--TAAAACTGGTC-T-CGTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGCCAAGGGCCATTT-AAAGGA-GGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAA-AGTACGAGCTCAAGAAAAATCAGGGGTTC--GTCAGCAAATG--TGC-AAACTAAAGGAATAACTGCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCCTTT-CAGAAAAACAAC--CTCCTTGGATCCCATTCGAAAACCAATCAT-AGG-TGCAAGTGGTGAAAC-G-TTAGTTGT-ATATGGTCGAACACAAA-TA-CTCATTAGAGTAGGGAATAAATCNTAT-AACA-TTAC-AGCTGCTATTGCTGACATTAA-C-ATGGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACGATCAATGTGGCTG-AGGG---AGAAATAAT-CATTGCGGG-GAAANCTA--TTAAACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGCAA-GGAAAACGT-GCGAGAAATGTATGG-TCATGCCCGATTACAATGAGG-AAAAGTA-ATACAACTGTTGGG-TGTAGCACTTTGGAAATGACTGTTGACG-ACGT-AATAGAAGA---GGAN-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTGGA--GCAAAAGGTGAGAC-CAG---AAAG-C-CTGGAATTGT-CNTCG-GGAGGGACCG--AT-CGTTG--AAGTCTCTTGTGGTCCCA-AAGAGCA-CTTTT-AGAGG-T-TAAGGATGATCTTACTCTGTAG--ACGATT-GACTG-ATAAAGAGGG-ATCC-GCCCTCCAATCTATTGTGC--CTTC-AGCG-A-GAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCA-GGTCACC-TTGG-AGTAACA-AAGACT--CTAAGTAAAA--TAAGNCAGGCATTTTAC-TGGCCTGGGCTACAGA-AAG-ATGT----CA-G-ACA-GTA-TATAGCCGGTTG--TGAGATC-TG-CA-TGAAATCAAAGAGC------CCG-A-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAGAGGGCTGGGACACCTATGGAACGCATAGCA-ATG-GATA-TCGTT-GG-GAACTCTCGCGCACCGACA-GAAACAACAGGTATC-AAGTCGG-AAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAT-TTGCTGTTGAG--GCAAAAC--T-ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCTA-TACATGTGGTGGACAGA
Reference ( family-2031 ) : GCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGT-CCATGAAGANT-ATCA--TTAAGGA--TAAAACTGGTC-T-CGTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGCCAAGGGCCATTT-AAAGGA-GGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAA-AGTACGAGCTCAAGAAAAATCAGGGGTTC--GTCAGCAAATG--TGC-AAACTAAAGGAATAACTGCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCCTTT-CAGAAAAACAAC--CTCCTTGGATCCCATTCGAAAACCAATCAT-AGG-TGCAAGTGGTGAAAC-G-TTAGTTGT-ATATGGTCGAACACAAA-TA-CTCATTAGAGTAGGGAATAAATCNTAT-AACA-TTAC-AGCTGCTATTGCTGACATTAA-C-ATGGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACGATCAATGTGGCTG-AGGG---AGAAATAAT-CATTGCGGG-GAAANCTA--TTAAACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGCAA-GGAAAACGT-GCGAGAAATGTA-GG-TCATGCCCGATTACAATGAGG-AAAAGTA-ATACAACTGTTGGG-TGTAGCACTTTGGAAATGACTGTTGACG-ACGT-AATAGAAGA---GGAN-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTGGA--GCAAAAGGTGAGAC-CAG---AAAG-C-CTGGAATTGT-CNTCG-GGAGGGACCG--AT-CGTTG--AAGTCTCTTGTGGTCCCA-AAGAGCA-CTTTT-AGAGG-T-TAAGGATGATCTTACTCTGTAG--ACGATT-GACTG-ATAAAGAGGG-ATCC-GCCCTCCAANCTATTGTGC--CTTC-AGCG-A-GAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCA-GGTCACC-TTGG-AGTAACA-AAGACT--CTAAGTAAAA--TAAGNCAGGCATTTTAC-TGGCCTGGGCTACAGA-AAG-ATGT----CA-G-ACA-GTA-TATAGCCGGTTG--TGAGATC-TG-CA-TGAAATCAAAGAGC------CCG-A-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAGAGGGCTGGGACACCTATGGAACGCATAGCA-ATG-GATA-TCGTT-GG-GAACTCTCGCGCACCGACA-GAAACAACAGGTATC-AAGTCGG-AAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAT-TTGCTGTTGAG--GCAAAAC--T-ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCTA-TACATGTGGTGGACAGA
gi|1 : CA--TTAAGGA--TAAAACTG----T-CGTCAGAATTGGTGGAAAAACTATCACCT-GCCAT-AATTGTGGTGGCTAAGGGCCATTA-AAAAG--GGGAATGATAAACAAAATCTAAAATTGCTGCGAGTAA-AGTAC--ACTCAA-AGAAATC-GAGGTTCGGGTCAGCAAATGGTCGC-AGACT-AAGTAATA--CGCGGAGAAAATGGTTACCTT--GGAGTA-CTGGACTCTTTCTTG--AGACCTGTTGCTTGAGAAAAGTAAATGCCT-CATTAATCGTCGATACCGGTTGCATCACT-ACAATCTTGTCT--AAA---------GGATTTATGACA-CCCGT-CAGAAAAACAAC--C-CCTT-GAT-CCATTAGAAAGCCTATCAT-AGGTTGCAA-TGG-GAAAC-A-TTAGTTGT-ATATGGTCGAACACAAATTA-CTCATTAGAGTAGGGAATAAATCATATAAACATTTACAAGCTGCTATTGCTGACATCAA-CAATTGA-GGAGTTCTA-GACTTGACTCGTATGAGCCAGTTAACAACTGCCACGATCAATGTGGCT---GTG---AAAAATAAT-CATTGCGGG-GAAAACTATTTTAAACT-CTTAAAAA----GGGCATT-ATGGATGCCGC-A-GTAAAACGT-GCGAGAAATGTATGGTTCATGCCCGATT-CAATGAGGTAAAAG-A-ATACAACTGTTGGGTTGTAGCACCTT-GAAAGGACTGTTGACG-AGCT-AATAGAAGA---GGAC-AGA-CCCTAT-CTGTTCTCCATGAAAAAAACCG-ATGTTGATAAATAAGCAAAGTAA-GAGTTGGTTGGA--GCAAAA-GTGAGAC-CAG---AAAG-C-C-GGAATTGTCCTTCG-GGAGGA--CG--ATGCGT----AAGTCTTCTGTGGTCCCA-AAGAGCACCTTTT-AGAGG-T-TAAGG-TGAT-TTACTCTGTAGAAACAACT-GACTG-ATAAAGAGGGAATCC-ACCCTCCAA-CTATTGTGCCTCTTC-AGCG-A-GAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCATGGTCACC-TTGGTAGTACAA-AAGACTGGTTAAGTAAAA--TAGGGCAAGCA-TTTAT-TGGCCT-GGCTACAAAGAAG-ATGT----CAGG-ACA--TA-TAT--CCGGTTT--TGAAATC-T--CA-TGAAATCAAAGAGC------CCGAA-ACAAAACTATGAG-ATCACCAATGCAGCCTCGTA-AGGGCT--GACA--TA-GCAATGCTGAG---ACA-GATAGTCGTT-G
gi|1 : cttatttgattagtacgccttcgcatgaagaaaatggaagaaagtcaagtcaatataagttcagaattacttagttcaCAAGTATC-AAGTCGG-AAAATCCCCCAAAGCTACACAGTTTTGGAGAGGTTTCAT-TTG-TGTTGAG--GCAAAAA--TAATCAGAT-TT-AACTTACAAAGTTAGATTTGTGGTTCAAAGAGT-AAATC-CAAGTTATTACATGTGGtatgaccagagacttctctgcaatcttcaaattcctggtgatgaaagtttatgtgtattttccaaggcaagtatcaagtcggaaaatcccccaaagctacacagttttggagaggtttcatttgtgttgaggcaaaaataatcagatttaacttacaaagttagatttgtggttcaaagagtaaatccaagttattacatgtggacgaatgtgtctcaaaagaagacaggaactgtcacataaaattatgttgaaaaagaaaactcagatgattttaccagagtaacagatcaatctggtttcagatgaagggtacacagattatgacgatacaagtctgagcaaatatacgctagtttgagaaagtaattgtctcattcctgaagcgagattaagaaaccaccaaagtggtatcacattatgaaacatataagtgtgtcatttccctgcaagaaaaataaggctgtgagaaacagcaacgataagagttaattcgctatatatatgatgcaaatatgaaatgttcaagatttaaaaaaatcatttgataacttgaccagtatcgat
gi|10 : cttatttgattagtacgccttcgcatgaagaaaatggaagaaagtcaagtcaatataagttcagaattacttagttcacattaaggataaaactgtcgtcagaattggtggaaaaactatcacctgccataattgtggtggctaagggccattaaaaaggggaatgataaacaaaatctaaaattgctgcgagtaaagtacactcaaagaaatcgaggttcgggtcagcaaatggtcgcagactaagtaatacgcggagaaaatggttaccttggagtactggactctttcttgagacctgttgcttgagaaaagtaaatgcctcattaatcgtcgataccggttgcatcactacaatcttgtctaaaggatttatgacacccgtcagaaaaacaaccccttgatccattagaaagcctatcataggttgcaatgggaaacattagttgtatatggtcgaacacaaattactcattagagtagggaataaatcatataaacatttacaagctgctattgctgacatcaacaattgaggagttctagacttgactcgtatgagccagttaacaactgccacgatcaatgtggctgtgaaaaataatcattgcggggaaaactattttaaactcttaaaaagggcattatggatgccgcagtaaaacgtgcgagaaatgtatggttcatgcccgattcaatgaggtaaaagaatacaactgttgggttgtagcaccttgaaaggactgttgacgagctaatagaagaggacagaccctatctgttctccatgaaaaaaaccgatgttgataaataagcaaagtaagagttggttggagcaaaagtgagaccagaaagccggaattgtccttcgggaggacgatgcgtaagtcttctgtggtcccaaagagcaccttttagaggttaaggtgatttactctgtagaaacaactgactgataaagagggaatccaccctccaactattgtgcctcttcagcgagagacgacatatactcaattatagccatgaccataaaactgcatggtcaccttggtagtacaaaagactggttaagtaaaatagggcaagcatttattggcctggctacaaagaagatgtcaggacatatatccggttttgaaatctcatgaaatcaaagagcccgaaacaaaactatgagatcaccaatgcagcctcgtaagggctgacatagcaatgctgagacagatagtcgttgtatgaccagagacttctctgcaatcttcaaattcctggtgatgaaagtttatgtgtattttccaaggAGTTGGTTGGAAAGCAAGAGC--AGTCTCAGTCTAAAGAC-CTCAA-------CTCA-GAAGGAGTCGTGAT-C------AAATTTCCT-TGGACACAGAAGA-TA--TGCT-AGTTA-T-TCTGGAT-ATGTTGTT---TAG--ATGACT-GAAAA-ATAAAGACAA-AGCA-GTGATCCAATGAAT----------C-AGCGTA-GAAATG-----TCCTCCAGTA------TACTCATGAT-CA-GA-AGCC-GCA-GGTCATT-TAGG-CATCAGA-AAAACC--CTGAGCAAAA--TAAGACAGTCTTACTAC-TGGCCTGGGCTGCAGA-AAG-ATGT----AC-G-CCA-ATA-CATTGCAGGCTG--TATGGTT-TG-C-------TCAAGGCGCAAGTATCC--A-ACAAAACTAAACG-CGCACCAATACAA-ATAGTTG-GAGCCGGT-TTCCAATGGAACGAGTAGCACATG-GACA-TCCTT-GGTGAA---TTACCTA-CAACA-GAAACAacgaatgtgtctcaaaagaagacaggaactgtcacataaaattatgttgaaaaagaaaactcagatgattttaccagagtaacagatcaatctggtttcagatgaagggtacacagattatgacgatacaagtctgagcaaatatacgctagtttgagaaagtaattgtctcattcctgaagcgagattaagaaaccaccaaagtggtatcacattatgaaacatataagtgtgtcatttccctgcaagaaaaataaggctgtgagaaacagcaacgataagagttaattcgctatatatatgatgcaaatatgaaatgttcaagatttaaaaaaatcatttgataacttgaccagtatcgat
gi|12 : cgataatgacaaggatataCA--TTAAGGACTTAAAACTGGTC----GGCAGTATGTGTCGAAAAAC-ATCACCTTGCCATTAATTGTGGTGGGCAAGGGCCATAT-AAAG-A-GGAATTG-TGAAGAA-ATCTAAAAATGCTGTGAGTAA--GTACG--CCCAAGAA----CAGAGGTT---GTCAGCAAATG--TGCCAAAC-AATGG--TAACTGCGA--TAAATG-TTACCTT-GG-AGTAACTGGACTCTTTTCTGGGAGACC-GTTG-TGGAGAAAG--AACTGCATGCATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAAAAAGGGGGGGAATTTATGACAACCTTT-CAGAAAAGAAACA-CTCCTTGGATCCCATTCGAAAATCAATCAC-AGG-TGCAAGTGGTGAAACTGTTTAGTTGgatacatctttagtaatatcagactattttaccaagtggacggaaaccattgctattgccaaagatcgagaaaagaactggtgcagatatatcattaaagaaacattgacaatattcggag
gi|15 : gatgacgtaaaatggagaaacaatcaagtcaattgaggtccagcaatacttgatcaA---------GGATTTATGACAGCCGTT-CAGAAAAACA----CCCCTTGGATCCCATTAGAAAGCCTATCAT-AGG-TGCAAGTGGTGAAAC-A-TTAGTTGT-ATATGGTCGAACACAAA-TA-CTCATTAGAGTAGGGAATAAATCATAT-AACA-TTAC-AGCTGCTATTGCTGACATCAA-C-ATTGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-TAACAACTG-CACGATCAATGTGGCTG-TGAG---AGAAATAAT-CATTGCGGG-GAAAACTA--TTAAACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGC-A-GGAAAACGT-GCGAGAAATGTATGG-TCATGCCCGATTGCAATGAGG--AAAGTA-ATACAACTGTTGGG-TGTAGCACCTTGGAA
gi|18 : TC-AGCATA-GAAACG-----TCTTCCAGTA------TAGTCATGAT-CAGAA-GACA-GCA-GATCAT--TTGG--GCATCAGAAAACC--CTGAGCAAAA--TAAGACAGTCTTACTAC-TGGTCCGGGTTTCAGA-AAG-ATGTACGCCA-ATACATGTA-CATTGCAGGTTG--TATGGTT-TG-C
gi|19 : agcagtgattccaatgagAGGTATC-AAGTCGG-AAAATCCCCAAAGCTTACACAGTTTTGGAGAGG-TTCAT-TTGCTGTTGAG--GCAAAAA--T-ATCAGAT-Ttcaaaacgcaagcatcca
gi|2 : tgctgagacagaagtcgttgtatgaccagagactctactggcaatcattcaatcctggtgatgaagtttatgtgtattttccaattgcaGCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATA-AGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACTCCAGT-CCATGAAAAAT-ATCA--TTAAGGA--TAAAACTAGTC-TTCATCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-A-TTGTGGTGGCCAAGGGCCATTT-AAAAGAAGGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAACAGTACGAGCTCAAGAAAAATCAGGGGTCC--GTCAGCAAAGG--TGC-AAACTAAAGGAATGAC-G-GGAGTAAATGGTTACCTTCGGGCGTA-CTGGATTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCCTTTTCAGAAAAACAACTACTCCTTGGATTCCATTCGAAAACCAATCACGAGG-TGCAAGTGGTGTAAC-G-TTAGTTGTTATATGGTCGAACACAAA-TAACTAATTAGAGTAGGGAATAAATCTTAT-AACA-TTAC-AGCTGCTATTGCTGACATTAA-C-ATGGATAGAGTTTTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-TACGATCAATGTGTCAG-AGGG---AAAAATAAT-CATTGCGGATGAAACCCA--TTCGACT-CTTAAAAAG--TGGACATTAATGGATGCCATAA-GAAAAACAT-CCAAGAAATA-A-TG-TTATACCCAAGTACAATGA-G-AACAGTA-AT---ACTCTTGGG-TGTAGCACTTTGGAAATGACTGTTGACGAACGT-AATAGAAGA---GGAG-AGACCCCTATCCTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGCGTTGGTTGGA--GC-AAAGGTGAGAC-CAG---AAAG-C-CTGGAATTGT-CATCGAGGAGGGACCG--AT-TGTTG--AAATCTCTTGTGGTCCCACAAGAGCA-CTTTT-AGAGG-TGTAAGGATGATCTTACTCTGTAG--ACGATG-GACTGAATAAAGAGGG-ATCC-GCCCT-CAATCTATTGTGC--CTTC-AGCG-A-GAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCA-GGTCACCGTTGG-AGTGACA-AAGACT--CTAAGTAAAA--TAAGGCAAGCATTTTAT-TGGCCTGGGCTACAAA-GAA-ATGT----CA-G-ACA-GTA-GATAGCCGGTTG--TGAGATC-TG-CA-TGAAATCAAAGAGC------CCA-A-ACAAAACAATGAGAAGCATCAATACAG-CGCGTAGAGGGCTGGAACACTTATGGAACGCATAGCA-ATGTGATG-TTGTT-AG-GAACACTCGCGCACCGACA-GAAATAACAGGTATCAAAGTCGGAAAAATCTCCAAAGCTT--ACAGTTTTGGAGAGG-TCCAT-TTGCTTTTGAG--GCAAAAC--T-GTC-GAT-CGAAACTTACAAGGTTAGA--TGTGGTTCAAAGGGTAAAATCTCAAGTTA-TACATGTGGTGGACAGA
gi|21 : CTGTGGAACTCGAGGCATATTTCGAGGCAGTGGGAAAACTTCGAGAGTCTAAAGGATACATGTAGTTGCAAATCGTCGATACCGCTGACAATACACCACTTAAAGAAACCGACAACATACACTTCATCTTGGATGAGTTACGCCAGT-CCATGAAGActcatc
gi|23 : GCTGAACTTGC-C-ATGGATGGAATACTCAGTTTGGACTT-TATGCA-CAGAAAACCATTG-CACCATCAAT----CTACAAGA---AGAAATAATGCTTTGTGGA-AAA
gi|24 : ctgtggtaAT-AT-AACTTTAAAACTTG----TGTGGTTTAGAGGGT-GAATCTCAGTTTA-TTCATc
gi|25 : acgatcagaaactctactgacagtcattcaaacccgctgacgaagtttac--AGACC-GTTG-TTGAGAAA-GTAAATGCCT-CATAACTCGTGGATACCGG-TGCATTACTGACAATGTTGTCTAAAAA---------GGATTTATGACAGCCTTT-CAGTAAAAtttg
gi|3 : CAATGAGG-AAA-GTA-ACACAACTGCTGGG-TGTAGCACTTTGGAAATGACTGTTGACG-ACGT-AATAGAAGAAGAGGAG-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGATG--AAATCAGCAAAGTTAGGAGTTGGTTGGA--GCAAAAGGTGAGAC-CAG---AAAG-C-CTGGAATTTT-CTTCG-GGAGG-ACCG--AT--GCTG--AAGTCTCT-GTGGTCCCA-AAGAGCA-CTTTT-AGAGG-T-TAAGGATGATCT-ACTCTGTAG--ACGATT-GACTG-ATAAAGAGGG-ATCC-GCCCTCCAACCTATTGTGC--CTTCCAGCG-A-GAGACGACATATACTCAATTACATGTATAGCCATGAC-CATAA-CACT-GCA-GGTCACC-TTGT-AGTGACC-AAGACT--TTAAGTAAAA--TAAGTCGGGCATTTTAC-TGGTATGGACTACAGA-GAA-ATGT----CA-G-ACA-GTA-TATAGCCGGTTG--TGAAATC-TG-CA-TGAAATCAAAGAGC------CCG-A-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAG-GGGCTGGGACACCTATGGAACGCATAGCA-ATA-GATA-TTGTTGGG-GAACTCCCGCGCATCGACA-GAAACAACAGATAT
gi|3 : CAGGTATC-AAGTCGG-GAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAG-TTGCTGTTGAG--GCAAAAC--T-ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCCA-TACAT---GTGGACAGAattttagttgtttctgattattttaccaaatgggtggaggcatttgcaatgccaaatatggaagcagtggcagatatagttgcaaaagaagtcgttacaaggtttggggttccatgtgtcatacattcagactaaggaaagcaatttgaaggcaaattgttcacaaaaatgtgcaaagttctgaacattaaaaagaccggtacaacgccctaccgtcccccatcagacgggatggtggagcgattcaataagactatgctatcaatgcttcgcaccttggtggacgagaaccagatgaactgggacgggctcctcccattcattctgatgacatacagatctgtagaacaggagactacagaatgcagtccaaactatcttatgtttggaagagaagtagcaactcctgtggaggtcatgtaccgaatgcccaatttaatgaggaatattcccccaatcagtgggcatgggagttgaaagagaagctagaaactgctcacagctttttgagacagcacacaacacaagctatgctgagacagannnnnnnnnnnnnnnnnnnnnnntgctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttcccaggtatcaagtcgggaaatctccaaaacttacacagttttggagaggtccagttgctgttgaggcaaaactatcagatttaacttacaaagttagatgtggttcaaagggtaaatctcaagccatacatgtggacagaatgcgtctcaaaagactcaaaagaaggcagga
gi|4 : caatgaggaaagtaacacaactgctgggtgtagcactttggaaatgactgttgacgacgtaatagaagaagaggagagacccctatctgttctccagaaaaacgatgatgaaatcagcaaagttaggagttggttggagcaaaaggtgagaccagaaagcctggaattttcttcgggaggaccgatgctgaagtctctgtggtcccaaagagcacttttagaggttaaggatgatctactctgtagacgattgactgataaagagggatccgccctccaacctattgtgccttccagcgagagacgacatatactcaattacatgtatagccatgaccataacactgcaggtcaccttgtagtgaccaagactttaagtaaaataagtcgggcattttactggtatggactacagagaaatgtcagacagtatatagccggttgtgaaatctgcatgaaatcaaagagcccgaacaaaactatgagagcaccaatgcagctcgtaggggctgggacacctatggaacgcatagcaatagatattgttggggaactcccgcgcatcgacagaaacaacagatatattttagttgtttctgattattttaccaaatgggtggaggcatttgcaatgccaaatatggaagcagtggcagatatagttgcaaaagaagtcgttacaaggtttggggttccatgtgtcatacattcagactaaggaaagcaatttgaaggcaaattgttcacaaaaatgtgcaaagttctgaacattaaaaagaccggtacaacgccctaccgtcccccatcagacgggatggtggagcgattcaataagactatgctatcaatgcttcgcaccttggtggacgagaaccagatgaactgggacgggctcctcccattcattctgatgacatacagatctgtagaacaggagactacagaatgcagtccaaactatcttatgtttggaagagaagtagcaactcctgtggaggtcatgtaccgaatgcccaatttaatgaggaatattcccccaatcagtgggcatgggagttgaaagagaagctagaaactgctcacagctttttgagacagcacacaacacaagctatgctgagacagannnnnnnnnnnnnnnnnnnnnnntgctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttccGCTGTGGAACTCCAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGGCTAAAGGATACA------TGCAGAATGTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGTCCCATGAAGAatgcgtctcaaaagactcaaaagaaggcagga
gi|4 : ttggggcagcggtgggatcatattgaacaatgaatctcagtgagctcaacgctactataagagaaattgaggctaaattaggctcaatacgaagtcgcaactccgttagaccatcaacacctcgagtgccaaagtatcagagcacggaattttctgcatgcgattctggtatcactacaatgatatctgttgcaagaaccaaatctgagtacacctgaggataaagataaacgaaaatctgtgaaatttcagtcagatgatgcaaaatacgacctgagcaaatacctacctaaagatgagcagctcgagagcatgtccactttgcattgcacctctagagacattaatgtaacaatgagaaataaaacgcggaaaagaacaaatgagcaagaacgagctcgtgctcaaaatgatataccatctagattgccgataaaatctgaggagcctatgcgtataaaagtaaagcctgctacttatgatggtaccacaccatggcttgatttcagatctcatttgaggcgtgcgctaagcttggacgatggagtgaggaggagaaaggtctctatctttctatgtccttacgagggctggcacaagggatcctaggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaaaaccgctttgctcctcccgatcaaatggaactttataggatacaactgagggagagagaacaggaagcgtccgagtcattaccagaactcggacagcatattaaggcggctcacaaatctcgcctaccctactgtccctgctgatggcgagaaacgctgtcaaaagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtattaagcaggcaaggcctgttaatctcaacgatgcgttaaacacAGT-CCA-GAATACTTATCACATTAAGGA--TAAAACTAGTCGT-CG--AGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGC-AAGGACCATTT-AAAGG---GGAATG-TAACAAATCT--AAAAATGCTGCGAGTAA-AGTACAGGCTCAAGAAA--TCAGGG-TTC--GTCGGCAAATG--TGC-AAACTAAAGGTA-AACTGCGGAGTAAATGGTTACTT---GGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGGAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTaaaggaagaaaagatcaagtcaattaagtccagaatacttatcacattaaggataaaactagtcgtcgagaattggaggaaaaacatcacctgccataattgtggtggcaaggaccatttaaaggggaatgtaacaaatctaaaaatgctgcgagtaaagtacaggctcaagaaatcagggttcgtcggcaaatgtgcaaactaaaggtaaactgcggagtaaatggttacttggagtactggactctttcttgagaccgttgttgaggaaagtaaatgcatcattactcgtcgataccggtgcatcactgacaatcttgt
gi|5 : ttggggcagcggtgggatcatattgaacaatgaatctcagtgagctcaacgctactataagagaaattgaggctaaattaggctcaatacgaagtcgcaactccgttagaccatcaacacctcgagtgccaaagtatcagagcacggaattttctgcatgcgattctggtatcactacaatgatatctgttgcaagaaccaaatctgagtacacctgaggataaagataaacgaaaatctgtgaaatttcagtcagatgatgcaaaatacgacctgagcaaatacctacctaaagatgagcagctcgagagcatgtccactttgcattgcacctctagagacattaatgtaacaatgagaaataaaacgcggaaaagaacaaatgagcaagaacgagctcgtgctcaaaatgatataccatctagattgccgataaaatctgaggagcctatgcgtataaaagtaaagcctgctacttatgatggtaccacaccatggcttgatttcagatctcatttgaggcgtgcgctaagcttggacgatggagtgaggaggagaaaggtctctatctttctatgtccttacgagggctggcacaagggatcctaggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaaaaccgctttgctcctcccgatcaaatggaactttataggatacaactgagggagagagaacaggaagcgtccgagtcattaccagaactcggacagcatattaaggcggctcacaaatctcgcctaccctactgtccctgctgatggcgagaaacgctgtcaaaagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtattaagcaggcaaggcctgttaatctcaacgatgcgttaaacacgctgtggaactccaggcatatttcaaggcagagggaaaacttcgagcggctaaaggatacatgcagaatgtcaatacagctgacaatgcaccacttaaagaaactgacgacatacactctattttggatgagttacgccagtcccatgaagaaaaggaagaaaagatcaagtcaattaGCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATA-AGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACTCCAGT-CCATGAAAAAT-ATCA--TTAAGGA--TAAAACTAGTCTT-CATCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT--ATTGTGGTGGCCAAGGGCCATTTAAAAGAA-GGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAACAGTACGAGCTCAAGAAAAATCAGGGGTCC--GTCAGCAAAGG--TGC-AAACTAAAGGAATGAC-G-GGAGTAAATGGTTACCTTCGGGCGTA-CTGGATTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGT
gi|6 : catatctgttttggtggcagtggtgggaatcatattgaacatgaatttcagtgagtcaacgctactataagagaaattgaggccaaattagtcacatacgaagtcgacactccgtatagaccacatcaaacaccacgagtgccaaagtatcagagcacggaattttctgcatgcagttctggtatcactacaatgaaacagttgcaagaccaaatctgagtacaaccttgaggataaagataaacgaaaatctgggaaatttcagtcagatgatgcaaaatacgacactgagaaataccttacctaaagatgagcagctcgaaagcttgcccactttgcatcgacctctagatgacgttaatgtaacaatgagaaataaaacgcgaaaagaacatgtgagcaagaacgaactcgtgctcaaaaatgatatagcatctagattgccgatgaaatctgaggagtctatgcgtataaaagtgaagcctgctacttatagatggtacacacaccatggcttgatttcagatctcaacttttgaggcgtgcgctaagcttagacgatggagtgaggaggagaaaggtctctatctttatttgtccttacgagggctggcacaagggatgcataggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaatgacgccctttgctcctcccgatcaactttataggatacaaactgagggagagacaacagaaagcgtccgagtcatttgccagaactcggacagcatataagacggctcacaaatctcgcctaccctactgtccctgctgatgtgcaagaaacgctgtccaagagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtatcaagcaggcaggcctcttaatctcaacgatgccgttagacaccTAT-AACA-TTAC-AGATACTATTGCTGATATTAAAT-ATGGATGTAGGTCTAGGACTGGACTTTCATGAG-CAG-AAACAAATG-CACGATCAATATGTCAG-AAGAGAAAGACATAAA-TATCGCGAT-GAAACCTT--TTGAACTTCTTAAAAAAGCTGGGCATT-GTGA--GCCGCATTGGAAAACGTAGCAAGAAATGTA-GG-AAACACGCATTTACAATGAGG-AAAA-TACGTACAACTGTTGAG-TGTAGCACTTTGAAATTGCCTTTTGACG-ACGTCAATAGAAAG---GGAACAGACCTCTAT-CTATTCTCCA-GAAAAA---CGGATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTAGA--GCAAAAGGTGAGAC-CAG---AAAG-CACTGAAAGTGT-CGTCG-GGA-GGACCG--AT--GTTGGAAAGTCGCTTGTGGACCGA-AAGAGCA-CTTTTAAGAGGTT-TAAGGATGATC-TACTCT-TAG--A-AATTGGACTG-ATAAAGA-GG-ATCCAACCCTCCAAGCTA-TGTGC--CTTA-AGCG-AGGAGACGACATATACTCAGTTG------TAGCCATGACTCATAAGAACTGGCA-GGTCACC-TTGG-AGTAACA-AAGACT--TTAATTAAAAATTAGGCCAAGCATTTTACTTGTCCTGTGCTACAAA-AAATATGC----CA-G-ACA-GTATTATAGCCGGCTGGTTGAG--CATGCCATTGAAATC-AAGAAC------ACA-AGACAAAAACATGAG-AGTACCAATGCAG-CTCGCATCGGGCTGGAACACCTA-GGAACGCATAGCA-ATG-GATA-TTGTT-TG-AAACTCTCGCGCACCTCTATTAAATAACAGTTATC-AAG-CGG-AAAATCTACCAAAC-TACACA-TTTT-GAGAGG-TTC------CTGTTGAGTCGCAAAACAAT-ATCA-AG-TT-AA-TTACAAAGTTAGA--TGTGGTTCAAA--GT-AAATCTTAAGGTA-TACATGTGG
gi|7 : TATTTCAAGGGAGAGGGAAGACTTCGAGAGTCTAAAGGATACA------TGCAGAATGTCAATACAGCTGGCAATGTACCACTTAAAGAAACTGACGACATACACTCTA-TTTAGATGAGTTATGCCAGT-CCATGAAGACT-ATacaaatgcgtctcaaagaagacagggaactgccacaactttctgttttaaaaaaaaaactcaaatgatttgatacccagtaaagcaatagatcaatctgactcagaggtacacaggaataacgatagatgttgtgcgcccaaatagacgatagttttgagaaagaaaagttctaattcctgaaagcgagattacgaaaaccaccaagtggttatcaatttacgaaatcatattaagttttccatttcccttcaatatacaaatgctgttgaggaacagcaatgatacaaagctcatcagaaatgaaatcttgtaaatatttgaaagttcgtatcataattatcatttaaaattgtcattgcttgagttgtgcgagggactcatactttagatgaggcgctggtaatg
gi|7 : CA--TTAAGGA--TAAAACTGGTC----GTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGC-AAGGGCCATTT-AAAG-A-GGGAATG-TAAAAAATCT--GAAAATGCTGTGAGTAA-AGTACGAGCCCAAGAAAA-TCAGGGGT-C--ATCACCAAATG--TGC-AAACCAATTG--TAACTGCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGGCTCTTTCTTG--AGACA-GTTG-TGGAAAAAAGTAAATGCAT-CATTAATCGTCGATACCGG-TGCATCACTGACAATTTTGTCT-AAAA---------GGATTTATGACAGCCTTT-CAGAAAAACA----CTCCTTGGATCCCATTCGAAAACCAATCAT-ATG-TGCAAGTGGTGAATC-G-TAAGTTGT-ATATGGTCGAACACAAA-TA-CTCATTAGAGTAGGGAATAAATCTTAT-AGCA-TTAC-AGTTGCTATTGCTAACATTAA-T-ATGGATGGGGTTTTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACAATCAATGTGGCTG-AGAG---AGAAATGAT-CATTGCGGG-CAAAGCTA--TTAAACT-CTTAGAATG--TGGGCATT-ATGGATGCCAC-A-GAAAAACAT-ACAATAAACGTAGGG-TTATGTCCGAGTACAATGA-G-AAAAGTA-ATACAACTGTAGGG-TGTAGCACTTTGGATATGACTATTGACG-ACAT-AATAGAAGA---GGAC-AGggaggaaaagatcaattcatttgactgatttgaggtccaaattacttatcacattaaggataaaactggtcgtcagaattggaggaaaaacatcacctgccataattgtggtggcaagggccatttaaagagggaatgtaaaaaatctgaaaatgctgtgagtaaagtacgagcccaagaaaatcaggggtcatcaccaaatgtgcaaaccaattgtaactgcggagtaaatggttaccttgggagtactgggctctttcttgagacagttgtggaaaaaagtaaatgcatcattaatcgtcgataccggtgcatcactgacaattttgtctaaaaggatttatgacagcctttcagaaaaacactccttggatcccattcgaaaaccaatcatatgtgcaagtggtgaatcgtaagttgtatatggtcgaacacaaatactcattagagtagggaataaatcttatagcattacagttgctattgctaacattaatatggatggggttttaggactggacttcatgagcagaaacaactgcacaatcaatgtggctgagagagaaatgatcattgcgggcaaagctattaaactcttagaatgtgggcattatggatgccacagaaaaacatacaataaacgtagggttatgtccgagtacaatgagaaaagtaatacaactgtagggtgtagcactttggatatgactattgacgacataatagaagaggacag
gi|8 : tatttcaagggagagggaagacttcgagagtctaaaggatacatgcagaatgtcaatacagctggcaatgtaccacttaaagaaactgacgacatacactctatttagatgagttatgccagtccatgaagactatggaggaaaagatcaattcatttgactgatttgaggtccaaattacttatcaCAGGTATC-AAGTCGG-GAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAG-TTGCTGTTGAG--GCAAAAC--T-ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCCA-TACAT---GTGGACAGA
gi|9 : gctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttccGTTGG-AAAAGTTCCTAAACTGAAATAGTTCTAGAG-GG-TTTATATTG-TGTGAAA--GATAAAT--G-ATCTGGTATC-CACT-ACAAGGTAAAT--TGTTGTCCATACGGA-AAATCTCAAGCTA-TTCATGatgcgtctcaaaagactcaaaagaaggcaggaactgtcacatgaaagattctgtctgtagatgtgagagcgtctgtgtgattgatatcagagtgagtaacagatccaatactggttcagaagaagggtaaccacagggaattaacgatacgacgcctaatgagcaaacagattgatatttttgagataagatacaattgtactcattcctgaatttggattaaatgaaacacaaaagagtgttaatcagattttatgagaacatattaagtttttttcattgttcgtccagacgaaacaaaggcgtgagaaaacagcaacgatttgatgatgctttaagtcgtattatagatatgttgtaaatatttgaaatgctcagtcaattataaatcatttataacctgtcaagttgtaattatgcgatgacggcatatttttgattgaggcggttaat
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTACATAATAAAAACCCACACAACTCTGTACCACCCACAATCGGACGGAATATACCGGTGGCCGATATTTTTTCAGTATATATATCAACGACCATAATGGTAACTGGGACAAGCACCTTCCCTATGCAATATGATGACCTACAGATGTGCAGCTAGTCTACGAGACCACGGGTGCTACTCCAAATAAAATGACGCTGGGCCGTGAAATGTCTACACCCACTAGACATTGCGTACGAAATGCCACAGGAAATTAAACGTATTCCTCAAAATGCATGGGCATGGCATTTGCAGGAAAGATTGGAAGAAGCGCATGCTGCAGTTAAAGAAATTACAAAAGATAGCATCCAACGACAAAAGTGGAATCACGACAGAAAATTAAACTGGCAAACTTTCCATGCTGGTGATCTTGTGTGTTTACTTTCCAAATCGTAAGATTGGAATATCATCTAA
Unaligned ( gi|13 ): ATCTCGGTGAGCTCAATCGCTACTGATCAGAGACATTGAGGCTAAATGGCCTCAATACCGAAGTCGAACCCCAGCTTCCGTTGGACCACTCAACACCACGATGCCAAGTGATAAGCGCACGGAAATTGTCTTGCAAGGCGAGTCTGTATCACTACAATGAAATATGTTGCAAAACCAAAACTGAGTACACCTCTGGATAAAGATAAACGAAAATCTGTGAAATTCCAGTCAGATGATGCACAATACGACATGAGCAAATACCTACCTAAAGATGAGCAGTTCGAAAGCATGTCCACTTTGCATTGACTTCTAGATGACTTTAATGTAACAATGAGAAATAAAATGTGGATAAGAAAAAATGAACAAGAACGAGGTCGTGCTCACAATGATATACCATCTAGATTGCCGATGAAA
Unaligned ( gi|14 ): AATGTTGGGAAGAGAGGTCAGAACACCTTGACATTGCATTTAAAATTCCAGCAGCTTTGAAAAGAATGCCTATCCAACAATGGGTTTGGGAGCTCAAGGAAAAGCTGGAACTGGCGCAATCATTTGTGCGGGAAAATCATTAAATGCCATCGGTTCCATCCTACGACAAAAGAGTCTTTATGATACAAAATTAAATTGGCAAATCTTTAAAAAATGAGATGAATTATACATACACTTCCCACAATATGCCGAGAGGGAAGTCTCGTAGTAATTACGTTGACTCAATTTTGGCGGGGTCCTTTTGTAGTGGAAGAAAAGTGTTCTGAAGTGAATGGGCCTTACGGAAAATTTCAAATCATACATGTAGAGACCGCAT
Unaligned ( gi|16 ): CCTATAGGTCGGTAGAACATGAAACAACATGATGCAGTCTAAACTACTTAATGCTCGGAAGAGAAGTTGGAGCACCAATTGACCTCATGTACGAAATGCCAACCAGTATAAAGAGAATTCCAGAAAACCAATGGGCTTGGGAATTGAAGGAACGAATGGAGATTGCTCACAGAATAGCTAGACAGAATGCTAATGAGGCGATGCTACGACAGAAATCTTTGCATGATCATAAGCTTAACTGGCAAACATTTAAACCTGGTGATGAAGTATATGTA
Unaligned ( gi|17 ): CATCTTTTGGTTGGGGGGGTGGGGCACGGTATCTATTGAACAATGATCTGAGTGAGCTTCAAAGCTACTATAAGAGAAGATTAGGACAAATTAGTCAATTACGAAGTCGACATTCGTTAGAACCTCAAACTCGAATGCCAAAGTATCAGCACAGGTAATTTCTGGCAAGCGTATCTGTGATCACTACAATGAATCTGTTTTGGCAAGACCAAAACTCTGAGTAACCTTGAGGATAAAGGATTAAACGAAAAT
Unaligned ( gi|20 ): TTTGCCATTTCTTTTGCAGAATATGCCTACAAGAACAAATGTTGTGAGAAACAGCAATGATACGAGCTCAACATTCGTAATGAATATCTTGTAATATTTGAAATGCTCCTATTAAATTTCATTTTATAAATTTTCATTGTTGAGTTTATGCGAGCACG
Unaligned ( gi|22 ): CAGATTATGAAACATAAAGTTTGCCATTTCTTTTGCAGAAGATGCCTGAAAGAACAAATGCTTTGAGAAAAAGCAACAATACGAGCTTAATTTGCTATTATAGATATGTTGTAAATATTTGAAATGCT
Unaligned ( gi|26 ): ACGACAAAAATGATATCGCGACAGAAAAATATACTGGCAAACCTTTCATGATGTATACGTTTACTTTCCAAAATGTAAAATTGGCACATTACCT
Unaligned ( gi|27 ): ATCTTTGTTTGTAAGGGTTATGAATCCTGGGTAATTTGAGCGATAATGAGCAGCTTTACAGTGAACTTACGCGTGCTCTCA
Alignments
lowQualScore : 222222 1 1 222 222 1 11 1111 1 11 222222222 2222 111 1 1 1 1 1 111 11 111 222 111 1 1 111 1 11 11 111 11 11 33333333 1 11 11 1 111111 1111 222222 11 22 1 1 1
lowQualScore : 222222 0 0 6 1 0 99 99 777 3 6 6 6 9 6 333 6 3 6 3 66 00 1111 99 6 1 1 9 6 55 6 77 5 5 0 5 5 88 666666666 1 6 9999 3 3 1 8 8 0 222 0 0 0 1 8 8 8 888 1 3 6 3 6 1 2 77 111 6 6 1 11 8 444 8 0 444 1 8 0 5 8 1 0 3 6 6 6 6 8 8 444 99 2 0 0 777 0 33 2 11 0 0 8 444 8 8 0 11 8 1 8 00 11 66666666 0 1 6 8 8 8 8 0 666 5 11 3 8 8 5 8 8 8 11 11 6 3 6 7 999999 6 3 6 6 6 77 99 6 99 99 1 6 6 6 4444 6 6 77 6 7 99 4 6 6 88 0 333333 44 8 8 8 00 22 0 8 8 8 8 0 66 6 0 0 6 5 1 0 5 77 4 77 8888 1 5 5 77 0 5 0 5 6
lowQualScore : ...... . . . . . .. .. ... . . . . . . ... . . . . .. .. .... .. . . . . . .. . .. . . . . . .. ......... . . .... . . . . . . ... . . . . . . . ... . . . . . . . .. ... . . . .. . ... . . ... . . . . . . . . . . . . . . ... .. . . . ... . .. . .. . . . ... . . . .. . . . .. .. ........ . . . . . . . . ... . .. . . . . . . . .. .. . . . . ...... . . . . . .. .. . .. .. . . . . .... . . .. . . .. . . . .. . ...... .. . . . .. .. . . . . . . .. . . . . . . . . .. . .. .... . . . .. . . . . .
lowQualScore : 666666 0 8 7 0 0 22 22 333 2 7 7 7 3 7 333 7 5 7 3 77 33 7777 22 7 7 7 8 7 88 7 99 7 7 1 7 7 88 777777777 0 7 6666 8 2 4 0 0 8 444 0 0 0 0 0 0 0 777 0 3 7 3 7 0 5 77 777 7 7 0 00 0 222 0 8 666 4 0 8 6 0 4 6 8 7 7 7 7 0 0 000 00 5 0 0 555 0 88 5 00 8 8 0 000 0 0 8 44 0 0 0 22 00 66666666 8 4 0 0 0 0 0 8 666 0 00 2 0 0 0 0 0 6 66 00 7 3 7 3 222222 7 2 7 7 7 77 88 7 22 22 0 7 7 7 2222 7 7 77 7 8 22 2 7 7 88 8 000000 44 0 0 0 44 22 6 0 0 0 0 0 00 5 2 0 7 7 6 1 7 00 3 99 0000 7 0 7 99 7 7 4 7 7
consensus : GCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGT-CCATGAAGANT-ATCA--TTAAGGA--TAAAACTGGTC-T-CGTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGCCAAGGGCCATTT-AAAGGA-GGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAA-AGTACGAGCTCAAGAAAAATCAGGGGTTC--GTCAGCAAATG--TGC-AAACTAAAGGAATAACTGCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCCTTT-CAGAAAAACAAC--CTCCTTGGATCCCATTCGAAAACCAATCAT-AGG-TGCAAGTGGTGAAAC-G-TTAGTTGT-ATATGGTCGAACACAAA-TA-CTCATTAGAGTAGGGAATAAATCNTAT-AACA-TTAC-AGCTGCTATTGCTGACATTAA-C-ATGGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACGATCAATGTGGCTG-AGGG---AGAAATAAT-CATTGCGGG-GAAANCTA--TTAAACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGCAA-GGAAAACGT-GCGAGAAATGTATGG-TCATGCCCGATTACAATGAGG-AAAAGTA-ATACAACTGTTGGG-TGTAGCACTTTGGAAATGACTGTTGACG-ACGT-AATAGAAGA---GGAN-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTGGA--GCAAAAGGTGAGAC-CAG---AAAG-C-CTGGAATTGT-CNTCG-GGAGGGACCG--AT-CGTTG--AAGTCTCTTGTGGTCCCA-AAGAGCA-CTTTT-AGAGG-T-TAAGGATGATCTTACTCTGTAG--ACGATT-GACTG-ATAAAGAGGG-ATCC-GCCCTCCAATCTATTGTGC--CTTC-AGCG-A-GAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCA-GGTCACC-TTGG-AGTAACA-AAGACT--CTAAGTAAAA--TAAGNCAGGCATTTTAC-TGGCCTGGGCTACAGA-AAG-ATGT----CA-G-ACA-GTA-TATAGCCGGTTG--TGAGATC-TG-CA-TGAAATCAAAGAGC------CCG-A-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAGAGGGCTGGGACACCTATGGAACGCATAGCA-ATG-GATA-TCGTT-GG-GAACTCTCGCGCACCGACA-GAAACAACAGGTATC-AAGTCGG-AAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAT-TTGCTGTTGAG--GCAAAAC--T-ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCTA-TACATGTGGTGGACAGA
Reference ( family-2031 ) : GCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGT-CCATGAAGANT-ATCA--TTAAGGA--TAAAACTGGTC-T-CGTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGCCAAGGGCCATTT-AAAGGA-GGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAA-AGTACGAGCTCAAGAAAAATCAGGGGTTC--GTCAGCAAATG--TGC-AAACTAAAGGAATAACTGCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCCTTT-CAGAAAAACAAC--CTCCTTGGATCCCATTCGAAAACCAATCAT-AGG-TGCAAGTGGTGAAAC-G-TTAGTTGT-ATATGGTCGAACACAAA-TA-CTCATTAGAGTAGGGAATAAATCNTAT-AACA-TTAC-AGCTGCTATTGCTGACATTAA-C-ATGGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACGATCAATGTGGCTG-AGGG---AGAAATAAT-CATTGCGGG-GAAANCTA--TTAAACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGCAA-GGAAAACGT-GCGAGAAATGTATGG-TCATGCCCGATTACAATGAGG-AAAAGTA-ATACAACTGTTGGG-TGTAGCACTTTGGAAATGACTGTTGACG-ACGT-AATAGAAGA---GGAN-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTGGA--GCAAAAGGTGAGAC-CAG---AAAG-C-CTGGAATTGT-CNTCG-GGAGGGACCG--AT-CGTTG--AAGTCTCTTGTGGTCCCA-AAGAGCA-CTTTT-AGAGG-T-TAAGGATGATCTTACTCTGTAG--ACGATT-GACTG-ATAAAGAGGG-ATCC-GCCCTCCAATCTATTGTGC--CTTC-AGCG-A-GAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCA-GGTCACC-TTGG-AGTAACA-AAGACT--CTAAGTAAAA--TAAGNCAGGCATTTTAC-TGGCCTGGGCTACAGA-AAG-ATGT----CA-G-ACA-GTA-TATAGCCGGTTG--TGAGATC-TG-CA-TGAAATCAAAGAGC------CCG-A-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAGAGGGCTGGGACACCTATGGAACGCATAGCA-ATG-GATA-TCGTT-GG-GAACTCTCGCGCACCGACA-GAAACAACAGGTATC-AAGTCGG-AAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAT-TTGCTGTTGAG--GCAAAAC--T-ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCTA-TACATGTGGTGGACAGA
gi|1 : CA--TTAAGGA--TAAAACTG----T-CGTCAGAATTGGTGGAAAAACTATCACCT-GCCAT-AATTGTGGTGGCTAAGGGCCATTA-AAAAG--GGGAATGATAAACAAAATCTAAAATTGCTGCGAGTAA-AGTAC--ACTCAA-AGAAATC-GAGGTTCGGGTCAGCAAATGGTCGC-AGACT-AAGTAATA--CGCGGAGAAAATGGTTACCTT--GGAGTA-CTGGACTCTTTCTTG--AGACCTGTTGCTTGAGAAAAGTAAATGCCT-CATTAATCGTCGATACCGGTTGCATCACT-ACAATCTTGTCT--AAA---------GGATTTATGACA-CCCGT-CAGAAAAACAAC--C-CCTT-GAT-CCATTAGAAAGCCTATCAT-AGGTTGCAA-TGG-GAAAC-A-TTAGTTGT-ATATGGTCGAACACAAATTA-CTCATTAGAGTAGGGAATAAATCATATAAACATTTACAAGCTGCTATTGCTGACATCAA-CAATTGA-GGAGTTCTA-GACTTGACTCGTATGAGCCAGTTAACAACTGCCACGATCAATGTGGCT---GTG---AAAAATAAT-CATTGCGGG-GAAAACTATTTTAAACT-CTTAAAAA----GGGCATT-ATGGATGCCGC-A-GTAAAACGT-GCGAGAAATGTATGGTTCATGCCCGATT-CAATGAGGTAAAAG-A-ATACAACTGTTGGGTTGTAGCACCTT-GAAAGGACTGTTGACG-AGCT-AATAGAAGA---GGAC-AGA-CCCTAT-CTGTTCTCCATGAAAAAAACCG-ATGTTGATAAATAAGCAAAGTAA-GAGTTGGTTGGA--GCAAAA-GTGAGAC-CAG---AAAG-C-C-GGAATTGTCCTTCG-GGAGGA--CG--ATGCGT----AAGTCTTCTGTGGTCCCA-AAGAGCACCTTTT-AGAGG-T-TAAGG-TGAT-TTACTCTGTAGAAACAACT-GACTG-ATAAAGAGGGAATCC-ACCCTCCAA-CTATTGTGCCTCTTC-AGCG-A-GAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCATGGTCACC-TTGGTAGTACAA-AAGACTGGTTAAGTAAAA--TAGGGCAAGCA-TTTAT-TGGCCT-GGCTACAAAGAAG-ATGT----CAGG-ACA--TA-TAT--CCGGTTT--TGAAATC-T--CA-TGAAATCAAAGAGC------CCGAA-ACAAAACTATGAG-ATCACCAATGCAGCCTCGTA-AGGGCT--GACA--TA-GCAATGCTGAG---ACA-GATAGTCGTT-G
gi|1 : cttatttgattagtacgccttcgcatgaagaaaatggaagaaagtcaagtcaatataagttcagaattacttagttcaCAAGTATC-AAGTCGG-AAAATCCCCCAAAGCTACACAGTTTTGGAGAGGTTTCAT-TTG-TGTTGAG--GCAAAAA--TAATCAGAT-TT-AACTTACAAAGTTAGATTTGTGGTTCAAAGAGT-AAATC-CAAGTTATTACATGTGGtatgaccagagacttctctgcaatcttcaaattcctggtgatgaaagtttatgtgtattttccaaggcaagtatcaagtcggaaaatcccccaaagctacacagttttggagaggtttcatttgtgttgaggcaaaaataatcagatttaacttacaaagttagatttgtggttcaaagagtaaatccaagttattacatgtggacgaatgtgtctcaaaagaagacaggaactgtcacataaaattatgttgaaaaagaaaactcagatgattttaccagagtaacagatcaatctggtttcagatgaagggtacacagattatgacgatacaagtctgagcaaatatacgctagtttgagaaagtaattgtctcattcctgaagcgagattaagaaaccaccaaagtggtatcacattatgaaacatataagtgtgtcatttccctgcaagaaaaataaggctgtgagaaacagcaacgataagagttaattcgctatatatatgatgcaaatatgaaatgttcaagatttaaaaaaatcatttgataacttgaccagtatcgat
gi|10 : cttatttgattagtacgccttcgcatgaagaaaatggaagaaagtcaagtcaatataagttcagaattacttagttcacattaaggataaaactgtcgtcagaattggtggaaaaactatcacctgccataattgtggtggctaagggccattaaaaaggggaatgataaacaaaatctaaaattgctgcgagtaaagtacactcaaagaaatcgaggttcgggtcagcaaatggtcgcagactaagtaatacgcggagaaaatggttaccttggagtactggactctttcttgagacctgttgcttgagaaaagtaaatgcctcattaatcgtcgataccggttgcatcactacaatcttgtctaaaggatttatgacacccgtcagaaaaacaaccccttgatccattagaaagcctatcataggttgcaatgggaaacattagttgtatatggtcgaacacaaattactcattagagtagggaataaatcatataaacatttacaagctgctattgctgacatcaacaattgaggagttctagacttgactcgtatgagccagttaacaactgccacgatcaatgtggctgtgaaaaataatcattgcggggaaaactattttaaactcttaaaaagggcattatggatgccgcagtaaaacgtgcgagaaatgtatggttcatgcccgattcaatgaggtaaaagaatacaactgttgggttgtagcaccttgaaaggactgttgacgagctaatagaagaggacagaccctatctgttctccatgaaaaaaaccgatgttgataaataagcaaagtaagagttggttggagcaaaagtgagaccagaaagccggaattgtccttcgggaggacgatgcgtaagtcttctgtggtcccaaagagcaccttttagaggttaaggtgatttactctgtagaaacaactgactgataaagagggaatccaccctccaactattgtgcctcttcagcgagagacgacatatactcaattatagccatgaccataaaactgcatggtcaccttggtagtacaaaagactggttaagtaaaatagggcaagcatttattggcctggctacaaagaagatgtcaggacatatatccggttttgaaatctcatgaaatcaaagagcccgaaacaaaactatgagatcaccaatgcagcctcgtaagggctgacatagcaatgctgagacagatagtcgttgtatgaccagagacttctctgcaatcttcaaattcctggtgatgaaagtttatgtgtattttccaaggAGTTGGTTGGAAAGCAAGAGC--AGTCTCAGTCTAAAGAC-CTCAA-------CTCA-GAAGGAGTCGTGAT-C------AAATTTCCT-TGGACACAGAAGA-TA--TGCT-AGTTA-T-TCTGGAT-ATGTTGTT---TAG--ATGACT-GAAAA-ATAAAGACAA-AGCA-GTGATCCAATGAAT----------C-AGCGTA-GAAATG-----TCCTCCAGTA------TACTCATGAT-CA-GA-AGCC-GCA-GGTCATT-TAGG-CATCAGA-AAAACC--CTGAGCAAAA--TAAGACAGTCTTACTAC-TGGCCTGGGCTGCAGA-AAG-ATGT----AC-G-CCA-ATA-CATTGCAGGCTG--TATGGTT-TG-C-------TCAAGGCGCAAGTATCC--A-ACAAAACTAAACG-CGCACCAATACAA-ATAGTTG-GAGCCGGT-TTCCAATGGAACGAGTAGCACATG-GACA-TCCTT-GGTGAA---TTACCTA-CAACA-GAAACAacgaatgtgtctcaaaagaagacaggaactgtcacataaaattatgttgaaaaagaaaactcagatgattttaccagagtaacagatcaatctggtttcagatgaagggtacacagattatgacgatacaagtctgagcaaatatacgctagtttgagaaagtaattgtctcattcctgaagcgagattaagaaaccaccaaagtggtatcacattatgaaacatataagtgtgtcatttccctgcaagaaaaataaggctgtgagaaacagcaacgataagagttaattcgctatatatatgatgcaaatatgaaatgttcaagatttaaaaaaatcatttgataacttgaccagtatcgat
gi|12 : cgataatgacaaggatataCA--TTAAGGACTTAAAACTGGTC----GGCAGTATGTGTCGAAAAAC-ATCACCTTGCCATTAATTGTGGTGGGCAAGGGCCATAT-AAAG-A-GGAATTG-TGAAGAA-ATCTAAAAATGCTGTGAGTAA--GTACG--CCCAAGAA----CAGAGGTT---GTCAGCAAATG--TGCCAAAC-AATGG--TAACTGCGA--TAAATG-TTACCTT-GG-AGTAACTGGACTCTTTTCTGGGAGACC-GTTG-TGGAGAAAG--AACTGCATGCATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAAAAAGGGGGGGAATTTATGACAACCTTT-CAGAAAAGAAACA-CTCCTTGGATCCCATTCGAAAATCAATCAC-AGG-TGCAAGTGGTGAAACTGTTTAGTTGgatacatctttagtaatatcagactattttaccaagtggacggaaaccattgctattgccaaagatcgagaaaagaactggtgcagatatatcattaaagaaacattgacaatattcggag
gi|15 : gatgacgtaaaatggagaaacaatcaagtcaattgaggtccagcaatacttgatcaA---------GGATTTATGACAGCCGTT-CAGAAAAACA----CCCCTTGGATCCCATTAGAAAGCCTATCAT-AGG-TGCAAGTGGTGAAAC-A-TTAGTTGT-ATATGGTCGAACACAAA-TA-CTCATTAGAGTAGGGAATAAATCATAT-AACA-TTAC-AGCTGCTATTGCTGACATCAA-C-ATTGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-TAACAACTG-CACGATCAATGTGGCTG-TGAG---AGAAATAAT-CATTGCGGG-GAAAACTA--TTAAACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGC-A-GGAAAACGT-GCGAGAAATGTATGG-TCATGCCCGATTGCAATGAGG--AAAGTA-ATACAACTGTTGGG-TGTAGCACCTTGGAA
gi|18 : TC-AGCATA-GAAACG-----TCTTCCAGTA------TAGTCATGAT-CAGAA-GACA-GCA-GATCAT--TTGG--GCATCAGAAAACC--CTGAGCAAAA--TAAGACAGTCTTACTAC-TGGTCCGGGTTTCAGA-AAG-ATGTACGCCA-ATACATGTA-CATTGCAGGTTG--TATGGTT-TG-C
gi|19 : agcagtgattccaatgagAGGTATC-AAGTCGG-AAAATCCCCAAAGCTTACACAGTTTTGGAGAGG-TTCAT-TTGCTGTTGAG--GCAAAAA--T-ATCAGAT-Ttcaaaacgcaagcatcca
gi|2 : tgctgagacagaagtcgttgtatgaccagagactctactggcaatcattcaatcctggtgatgaagtttatgtgtattttccaattgcaGCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATA-AGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACTCCAGT-CCATGAAAAAT-ATCA--TTAAGGA--TAAAACTAGTC-TTCATCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-A-TTGTGGTGGCCAAGGGCCATTT-AAAAGAAGGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAACAGTACGAGCTCAAGAAAAATCAGGGGTCC--GTCAGCAAAGG--TGC-AAACTAAAGGAATGAC-G-GGAGTAAATGGTTACCTTCGGGCGTA-CTGGATTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCCTTTTCAGAAAAACAACTACTCCTTGGATTCCATTCGAAAACCAATCACGAGG-TGCAAGTGGTGTAAC-G-TTAGTTGTTATATGGTCGAACACAAA-TAACTAATTAGAGTAGGGAATAAATCTTAT-AACA-TTAC-AGCTGCTATTGCTGACATTAA-C-ATGGATAGAGTTTTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-TACGATCAATGTGTCAG-AGGG---AAAAATAAT-CATTGCGGATGAAACCCA--TTCGACT-CTTAAAAAG--TGGACATTAATGGATGCCATAA-GAAAAACAT-CCAAGAAATA-AT-G-TTATACCCAAGTACAATGA-G-AACAGTA-AT---ACTCTTGGG-TGTAGCACTTTGGAAATGACTGTTGACGAACGT-AATAGAAGA---GGAG-AGACCCCTATCCTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGCGTTGGTTGGA--GC-AAAGGTGAGAC-CAG---AAAG-C-CTGGAATTGT-CATCGAGGAGGGACCG--AT-TGTTG--AAATCTCTTGTGGTCCCACAAGAGCA-CTTTT-AGAGG-TGTAAGGATGATCTTACTCTGTAG--ACGATG-GACTGAATAAAGAGGG-ATCC-GCCCT-CAATCTATTGTGC--CTTC-AGCG-A-GAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCA-GGTCACCGTTGG-AGTGACA-AAGACT--CTAAGTAAAA--TAAGGCAAGCATTTTAT-TGGCCTGGGCTACAAA-GAA-ATGT----CA-G-ACA-GTA-GATAGCCGGTTG--TGAGATC-TG-CA-TGAAATCAAAGAGC------CCA-A-ACAAAACAATGAGAAGCATCAATACAG-CGCGTAGAGGGCTGGAACACTTATGGAACGCATAGCA-ATGTGATG-TTGTT-AG-GAACACTCGCGCACCGACA-GAAATAACAGGTATCAAAGTCGGAAAAATCTCCAAAGCTT--ACAGTTTTGGAGAGG-TCCAT-TTGCTTTTGAG--GCAAAAC--T-GTC-GAT-CGAAACTTACAAGGTTAGA--TGTGGTTCAAAGGGTAAAATCTCAAGTTA-TACATGTGGTGGACAGA
gi|21 : CTGTGGAACTCGAGGCATATTTCGAGGCAGTGGGAAAACTTCGAGAGTCTAAAGGATACATGTAGTTGCAAATCGTCGATACCGCTGACAATACACCACTTAAAGAAACCGACAACATACACTTCATCTTGGATGAGTTACGCCAGT-CCATGAAGActcatc
gi|23 : GCTGAACTTGC-C-ATGGATGGAATACTCAGTTTGGACTT-TATGCA-CAGAAAACCATTG-CACCATCAAT----CTACAAGA---AGAAATAATGCTTTGTGGA-AAA
gi|24 : ctgtggtaAT-AT-AACTTTAAAACTTG----TGTGGTTTAGAGGGT-GAATCTCAGTTTA-TTCATc
gi|25 : acgatcagaaactctactgacagtcattcaaacccgctgacgaagtttac--AGACC-GTTG-TTGAGAAA-GTAAATGCCT-CATAACTCGTGGATACCGG-TGCATTACTGACAATGTTGTCTAAAAA---------GGATTTATGACAGCCTTT-CAGTAAAAtttg
gi|3 : CAATGAGG-AAA-GTA-ACACAACTGCTGGG-TGTAGCACTTTGGAAATGACTGTTGACG-ACGT-AATAGAAGAAGAGGAG-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGATG--AAATCAGCAAAGTTAGGAGTTGGTTGGA--GCAAAAGGTGAGAC-CAG---AAAG-C-CTGGAATTTT-CTTCG-GGAGG-ACCG--AT--GCTG--AAGTCTCT-GTGGTCCCA-AAGAGCA-CTTTT-AGAGG-T-TAAGGATGATCT-ACTCTGTAG--ACGATT-GACTG-ATAAAGAGGG-ATCC-GCCCTCCAACCTATTGTGC--CTTCCAGCG-A-GAGACGACATATACTCAATTACATGTATAGCCATGAC-CATAA-CACT-GCA-GGTCACC-TTGT-AGTGACC-AAGACT--TTAAGTAAAA--TAAGTCGGGCATTTTAC-TGGTATGGACTACAGA-GAA-ATGT----CA-G-ACA-GTA-TATAGCCGGTTG--TGAAATC-TG-CA-TGAAATCAAAGAGC------CCG-A-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAG-GGGCTGGGACACCTATGGAACGCATAGCA-ATA-GATA-TTGTTGGG-GAACTCCCGCGCATCGACA-GAAACAACAGATAT
gi|3 : CAGGTATC-AAGTCGG-GAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAG-TTGCTGTTGAG--GCAAAAC--T-ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCCA-TACAT---GTGGACAGAattttagttgtttctgattattttaccaaatgggtggaggcatttgcaatgccaaatatggaagcagtggcagatatagttgcaaaagaagtcgttacaaggtttggggttccatgtgtcatacattcagactaaggaaagcaatttgaaggcaaattgttcacaaaaatgtgcaaagttctgaacattaaaaagaccggtacaacgccctaccgtcccccatcagacgggatggtggagcgattcaataagactatgctatcaatgcttcgcaccttggtggacgagaaccagatgaactgggacgggctcctcccattcattctgatgacatacagatctgtagaacaggagactacagaatgcagtccaaactatcttatgtttggaagagaagtagcaactcctgtggaggtcatgtaccgaatgcccaatttaatgaggaatattcccccaatcagtgggcatgggagttgaaagagaagctagaaactgctcacagctttttgagacagcacacaacacaagctatgctgagacagannnnnnnnnnnnnnnnnnnnnnntgctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttcccaggtatcaagtcgggaaatctccaaaacttacacagttttggagaggtccagttgctgttgaggcaaaactatcagatttaacttacaaagttagatgtggttcaaagggtaaatctcaagccatacatgtggacagaatgcgtctcaaaagactcaaaagaaggcagga
gi|4 : caatgaggaaagtaacacaactgctgggtgtagcactttggaaatgactgttgacgacgtaatagaagaagaggagagacccctatctgttctccagaaaaacgatgatgaaatcagcaaagttaggagttggttggagcaaaaggtgagaccagaaagcctggaattttcttcgggaggaccgatgctgaagtctctgtggtcccaaagagcacttttagaggttaaggatgatctactctgtagacgattgactgataaagagggatccgccctccaacctattgtgccttccagcgagagacgacatatactcaattacatgtatagccatgaccataacactgcaggtcaccttgtagtgaccaagactttaagtaaaataagtcgggcattttactggtatggactacagagaaatgtcagacagtatatagccggttgtgaaatctgcatgaaatcaaagagcccgaacaaaactatgagagcaccaatgcagctcgtaggggctgggacacctatggaacgcatagcaatagatattgttggggaactcccgcgcatcgacagaaacaacagatatattttagttgtttctgattattttaccaaatgggtggaggcatttgcaatgccaaatatggaagcagtggcagatatagttgcaaaagaagtcgttacaaggtttggggttccatgtgtcatacattcagactaaggaaagcaatttgaaggcaaattgttcacaaaaatgtgcaaagttctgaacattaaaaagaccggtacaacgccctaccgtcccccatcagacgggatggtggagcgattcaataagactatgctatcaatgcttcgcaccttggtggacgagaaccagatgaactgggacgggctcctcccattcattctgatgacatacagatctgtagaacaggagactacagaatgcagtccaaactatcttatgtttggaagagaagtagcaactcctgtggaggtcatgtaccgaatgcccaatttaatgaggaatattcccccaatcagtgggcatgggagttgaaagagaagctagaaactgctcacagctttttgagacagcacacaacacaagctatgctgagacagannnnnnnnnnnnnnnnnnnnnnntgctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttccGCTGTGGAACTCCAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGGCTAAAGGATACA------TGCAGAATGTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGTCCCATGAAGAatgcgtctcaaaagactcaaaagaaggcagga
gi|4 : ttggggcagcggtgggatcatattgaacaatgaatctcagtgagctcaacgctactataagagaaattgaggctaaattaggctcaatacgaagtcgcaactccgttagaccatcaacacctcgagtgccaaagtatcagagcacggaattttctgcatgcgattctggtatcactacaatgatatctgttgcaagaaccaaatctgagtacacctgaggataaagataaacgaaaatctgtgaaatttcagtcagatgatgcaaaatacgacctgagcaaatacctacctaaagatgagcagctcgagagcatgtccactttgcattgcacctctagagacattaatgtaacaatgagaaataaaacgcggaaaagaacaaatgagcaagaacgagctcgtgctcaaaatgatataccatctagattgccgataaaatctgaggagcctatgcgtataaaagtaaagcctgctacttatgatggtaccacaccatggcttgatttcagatctcatttgaggcgtgcgctaagcttggacgatggagtgaggaggagaaaggtctctatctttctatgtccttacgagggctggcacaagggatcctaggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaaaaccgctttgctcctcccgatcaaatggaactttataggatacaactgagggagagagaacaggaagcgtccgagtcattaccagaactcggacagcatattaaggcggctcacaaatctcgcctaccctactgtccctgctgatggcgagaaacgctgtcaaaagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtattaagcaggcaaggcctgttaatctcaacgatgcgttaaacacAGT-CCA-GAATACTTATCACATTAAGGA--TAAAACTAGTCGT-CG--AGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGC-AAGGACCATTT-AAAGG---GGAATG-TAACAAATCT--AAAAATGCTGCGAGTAA-AGTACAGGCTCAAGAAA--TCAGGG-TTC--GTCGGCAAATG--TGC-AAACTAAAGGTA-AACTGCGGAGTAAATGGTTACTT---GGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGGAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTaaaggaagaaaagatcaagtcaattaagtccagaatacttatcacattaaggataaaactagtcgtcgagaattggaggaaaaacatcacctgccataattgtggtggcaaggaccatttaaaggggaatgtaacaaatctaaaaatgctgcgagtaaagtacaggctcaagaaatcagggttcgtcggcaaatgtgcaaactaaaggtaaactgcggagtaaatggttacttggagtactggactctttcttgagaccgttgttgaggaaagtaaatgcatcattactcgtcgataccggtgcatcactgacaatcttgt
gi|5 : ttggggcagcggtgggatcatattgaacaatgaatctcagtgagctcaacgctactataagagaaattgaggctaaattaggctcaatacgaagtcgcaactccgttagaccatcaacacctcgagtgccaaagtatcagagcacggaattttctgcatgcgattctggtatcactacaatgatatctgttgcaagaaccaaatctgagtacacctgaggataaagataaacgaaaatctgtgaaatttcagtcagatgatgcaaaatacgacctgagcaaatacctacctaaagatgagcagctcgagagcatgtccactttgcattgcacctctagagacattaatgtaacaatgagaaataaaacgcggaaaagaacaaatgagcaagaacgagctcgtgctcaaaatgatataccatctagattgccgataaaatctgaggagcctatgcgtataaaagtaaagcctgctacttatgatggtaccacaccatggcttgatttcagatctcatttgaggcgtgcgctaagcttggacgatggagtgaggaggagaaaggtctctatctttctatgtccttacgagggctggcacaagggatcctaggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaaaaccgctttgctcctcccgatcaaatggaactttataggatacaactgagggagagagaacaggaagcgtccgagtcattaccagaactcggacagcatattaaggcggctcacaaatctcgcctaccctactgtccctgctgatggcgagaaacgctgtcaaaagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtattaagcaggcaaggcctgttaatctcaacgatgcgttaaacacgctgtggaactccaggcatatttcaaggcagagggaaaacttcgagcggctaaaggatacatgcagaatgtcaatacagctgacaatgcaccacttaaagaaactgacgacatacactctattttggatgagttacgccagtcccatgaagaaaaggaagaaaagatcaagtcaattaGCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATA-AGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACTCCAGT-CCATGAAAAAT-ATCA--TTAAGGA--TAAAACTAGTCTT-CATCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT--ATTGTGGTGGCCAAGGGCCATTTAAAAGAA-GGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAACAGTACGAGCTCAAGAAAAATCAGGGGTCC--GTCAGCAAAGG--TGC-AAACTAAAGGAATGAC-G-GGAGTAAATGGTTACCTTCGGGCGTA-CTGGATTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGT
gi|6 : catatctgttttggtggcagtggtgggaatcatattgaacatgaatttcagtgagtcaacgctactataagagaaattgaggccaaattagtcacatacgaagtcgacactccgtatagaccacatcaaacaccacgagtgccaaagtatcagagcacggaattttctgcatgcagttctggtatcactacaatgaaacagttgcaagaccaaatctgagtacaaccttgaggataaagataaacgaaaatctgggaaatttcagtcagatgatgcaaaatacgacactgagaaataccttacctaaagatgagcagctcgaaagcttgcccactttgcatcgacctctagatgacgttaatgtaacaatgagaaataaaacgcgaaaagaacatgtgagcaagaacgaactcgtgctcaaaaatgatatagcatctagattgccgatgaaatctgaggagtctatgcgtataaaagtgaagcctgctacttatagatggtacacacaccatggcttgatttcagatctcaacttttgaggcgtgcgctaagcttagacgatggagtgaggaggagaaaggtctctatctttatttgtccttacgagggctggcacaagggatgcataggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaatgacgccctttgctcctcccgatcaactttataggatacaaactgagggagagacaacagaaagcgtccgagtcatttgccagaactcggacagcatataagacggctcacaaatctcgcctaccctactgtccctgctgatgtgcaagaaacgctgtccaagagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtatcaagcaggcaggcctcttaatctcaacgatgccgttagacaccTAT-AACA-TTAC-AGATACTATTGCTGATATTAAAT-ATGGATGTAGGTCTAGGACTGGACTTTCATGAG-CAG-AAACAAATG-CACGATCAATATGTCAG-AAGAGAAAGACATAAA-TATCGCGAT-GAAACCTT--TTGAACTTCTTAAAAAAGCTGGGCATT-GTGA--GCCGCATTGGAAAACGTAGCAAGAAATGTA-GG-AAACACGCATTTACAATGAGG-AAAA-TACGTACAACTGTTGAG-TGTAGCACTTTGAAATTGCCTTTTGACG-ACGTCAATAGAAAG---GGAACAGACCTCTAT-CTATTCTCCA-GAAAAA---CGGATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTAGA--GCAAAAGGTGAGAC-CAG---AAAG-CACTGAAAGTGT-CGTCG-GGA-GGACCG--AT--GTTGGAAAGTCGCTTGTGGACCGA-AAGAGCA-CTTTTAAGAGGTT-TAAGGATGATC-TACTCT-TAG--A-AATTGGACTG-ATAAAGA-GG-ATCCAACCCTCCAAGCTA-TGTGC--CTTA-AGCG-AGGAGACGACATATACTCAGTTG------TAGCCATGACTCATAAGAACTGGCA-GGTCACC-TTGG-AGTAACA-AAGACT--TTAATTAAAAATTAGGCCAAGCATTTTACTTGTCCTGTGCTACAAA-AAATATGC----CA-G-ACA-GTATTATAGCCGGCTGGTTGAG--CATGCCATTGAAATC-AAGAAC------ACA-AGACAAAAACATGAG-AGTACCAATGCAG-CTCGCATCGGGCTGGAACACCTA-GGAACGCATAGCA-ATG-GATA-TTGTT-TG-AAACTCTCGCGCACCTCTATTAAATAACAGTTATC-AAG-CGG-AAAATCTACCAAAC-TACACA-TTTT-GAGAGG-TTC------CTGTTGAGTCGCAAAACAAT-ATCA-AG-TT-AA-TTACAAAGTTAGA--TGTGGTTCAAA--GT-AAATCTTAAGGTA-TACATGTGG
gi|7 : TATTTCAAGGGAGAGGGAAGACTTCGAGAGTCTAAAGGATACA------TGCAGAATGTCAATACAGCTGGCAATGTACCACTTAAAGAAACTGACGACATACACTCTA-TTTAGATGAGTTATGCCAGT-CCATGAAGACT-ATacaaatgcgtctcaaagaagacagggaactgccacaactttctgttttaaaaaaaaaactcaaatgatttgatacccagtaaagcaatagatcaatctgactcagaggtacacaggaataacgatagatgttgtgcgcccaaatagacgatagttttgagaaagaaaagttctaattcctgaaagcgagattacgaaaaccaccaagtggttatcaatttacgaaatcatattaagttttccatttcccttcaatatacaaatgctgttgaggaacagcaatgatacaaagctcatcagaaatgaaatcttgtaaatatttgaaagttcgtatcataattatcatttaaaattgtcattgcttgagttgtgcgagggactcatactttagatgaggcgctggtaatg
gi|7 : CA--TTAAGGA--TAAAACTGGTC----GTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGC-AAGGGCCATTT-AAAG-A-GGGAATG-TAAAAAATCT--GAAAATGCTGTGAGTAA-AGTACGAGCCCAAGAAAA-TCAGGGGT-C--ATCACCAAATG--TGC-AAACCAATTG--TAACTGCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGGCTCTTTCTTG--AGACA-GTTG-TGGAAAAAAGTAAATGCAT-CATTAATCGTCGATACCGG-TGCATCACTGACAATTTTGTCT-AAAA---------GGATTTATGACAGCCTTT-CAGAAAAACA----CTCCTTGGATCCCATTCGAAAACCAATCAT-ATG-TGCAAGTGGTGAATC-G-TAAGTTGT-ATATGGTCGAACACAAA-TA-CTCATTAGAGTAGGGAATAAATCTTAT-AGCA-TTAC-AGTTGCTATTGCTAACATTAA-T-ATGGATGGGGTTTTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACAATCAATGTGGCTG-AGAG---AGAAATGAT-CATTGCGGG-CAAAGCTA--TTAAACT-CTTAGAATG--TGGGCATT-ATGGATGCCAC-A-GAAAAACAT-ACAATAAACGTAGGG-TTATGTCCGAGTACAATGA-G-AAAAGTA-ATACAACTGTAGGG-TGTAGCACTTTGGATATGACTATTGACG-ACAT-AATAGAAGA---GGAC-AGggaggaaaagatcaattcatttgactgatttgaggtccaaattacttatcacattaaggataaaactggtcgtcagaattggaggaaaaacatcacctgccataattgtggtggcaagggccatttaaagagggaatgtaaaaaatctgaaaatgctgtgagtaaagtacgagcccaagaaaatcaggggtcatcaccaaatgtgcaaaccaattgtaactgcggagtaaatggttaccttgggagtactgggctctttcttgagacagttgtggaaaaaagtaaatgcatcattaatcgtcgataccggtgcatcactgacaattttgtctaaaaggatttatgacagcctttcagaaaaacactccttggatcccattcgaaaaccaatcatatgtgcaagtggtgaatcgtaagttgtatatggtcgaacacaaatactcattagagtagggaataaatcttatagcattacagttgctattgctaacattaatatggatggggttttaggactggacttcatgagcagaaacaactgcacaatcaatgtggctgagagagaaatgatcattgcgggcaaagctattaaactcttagaatgtgggcattatggatgccacagaaaaacatacaataaacgtagggttatgtccgagtacaatgagaaaagtaatacaactgtagggtgtagcactttggatatgactattgacgacataatagaagaggacag
gi|8 : tatttcaagggagagggaagacttcgagagtctaaaggatacatgcagaatgtcaatacagctggcaatgtaccacttaaagaaactgacgacatacactctatttagatgagttatgccagtccatgaagactatggaggaaaagatcaattcatttgactgatttgaggtccaaattacttatcaCAGGTATC-AAGTCGG-GAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAG-TTGCTGTTGAG--GCAAAAC--T-ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCCA-TACAT---GTGGACAGA
gi|9 : gctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttccGTTGG-AAAAGTTCCTAAACTGAAATAGTTCTAGAG-GG-TTTATATTG-TGTGAAA--GATAAAT--G-ATCTGGTATC-CACT-ACAAGGTAAAT--TGTTGTCCATACGGA-AAATCTCAAGCTA-TTCATGatgcgtctcaaaagactcaaaagaaggcaggaactgtcacatgaaagattctgtctgtagatgtgagagcgtctgtgtgattgatatcagagtgagtaacagatccaatactggttcagaagaagggtaaccacagggaattaacgatacgacgcctaatgagcaaacagattgatatttttgagataagatacaattgtactcattcctgaatttggattaaatgaaacacaaaagagtgttaatcagattttatgagaacatattaagtttttttcattgttcgtccagacgaaacaaaggcgtgagaaaacagcaacgatttgatgatgctttaagtcgtattatagatatgttgtaaatatttgaaatgctcagtcaattataaatcatttataacctgtcaagttgtaattatgcgatgacggcatatttttgattgaggcggttaat
blockSeqs : TGTAGT C C C T CA CT TT G . T T C A GAA . T C C GA AA CC . C T A T C CG A GG . . G . AA AAAGGGGGG A T ACTA T C A G . TGT T . A A . . . AT G T . A . G G AC GAA G T A . T AGC A ATT G A T . C G G . C . A C AGA AC C C . . G . G AA T TCT A A AT . C A AG TG GTTGGA A G . A T G GTT G . T G A C . A T TT . C T G A CATGTA T G G G . CG C G . AT A T . T ACGC . T TG T T GT G A C AT AAGTAT A G A . GA AA T C T . G . CA C T A A A . TA C TC AAT A A A . A . G
blockSeqs : TGTACA C . A . . . GT T . . . C . AA . T C C AG AA TC . . T T T C CG . . . . . . A . G . ACA C C T . . A . . . T . . . C G . . . . G T G . . . C . . G . AA A . T . T A G . . . . . . G C . . . . . G . . . . . AT . A . GA . TGTTG T C . . . . CTT G . C . . G . . T TT . . T . A . . T . . . T A . . . A . . . . . . A . T . G . . A . G . . . TC GA T . . . . . CT T . . . A . T C . T A . . . . . G
blockSeqs : . C . C . . . TT T . . . C . A . T C . GA A CC . . T A T C G . . . . . . A . G . . T T A . . G . . . T . . . C A . . . . A T G . . . C . . G . A G . G . A A G . . . . . . G C . . . . . G . . . . . AG . T . GA . GCTG T . . . . . CT . . C . . G . . C T . . . . A . . T . . . C A . . . G . . . . . . G . A . A . . A . A . . . G AA T . . . . . CT C . . . A . T C . T A . . . . . G
blockSeqs : . . . . . . T . . . . . G . T . . GA . T . . C . . . G . . . . . . A . G . . T C A . . G . . . C G . . . . G G G . . . G . . G . A A . . . T A . . . . . . . C . . . . . . . G . A . C A . . . . . CT . . . . . . . . G T . . . . . . . T . . . C A . . . T . . . . . . G . A . A . . . . . . . . G T . . . . . . . C . G C . T A . . . . . .
blockSeqs : . . . . . . . . . . A . . . . G . C . . . . . . . . . . . . . . G . T G . . . . . . G . . . . . . . . . . . . . . . . . . . . . . C . . . . . . G . A . . . . . . A . G C . T T . . . . . .
blockSeqs : . . . . . . T . . . . G . . . . . .
blockSeqs : .
blockSeqCons : ****** TT* GA CC** ** G* A* **** C** G* ** G** GA GTTG**** CT* ** T* ** A* ** G* A* G* T*** **
originalCons : GCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAGAATGTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGT-CCATGAAGANT-ATCA--TTAAGGA--TAAAACTGGTC-T-CGTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGCCAAGGGCCATTT-AAAGGA-GGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAA-AGTACGAGCTCAAGAAAAATCAGGGGTTC--GTCAGCAAATG--TGC-AAACTAAAGGAATAACTGCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCCTTT-CAGAAAAACAAC--CTCCTTGGATCCCATTCGAAAACCAATCAT-AGG-TGCAAGTGGTGAAAC-G-TTAGTTGT-ATATGGTCGAACACAAA-TA-CTCATTAGAGTAGGGAATAAATCNTAT-AACA-TTAC-AGCTGCTATTGCTGACATTAA-C-ATGGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACGATCAATGTGGCTG-AGGG---AGAAATAAT-CATTGCGGG-GAAANCTA--TTAAACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGCAA-GGAAAACGT-GCGAGAAATGTATGG-TCATGCCCGATTACAATGAGG-AAAAGTA-ATACAACTGTTGGG-TGTAGCACTTTGGAAATGACTGTTGACG-ACGT-AATAGAAGA---GGAN-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTGGA--GCAAAAGGTGAGAC-CAG---AAAG-C-CTGGAATTGT-CNTCG-GGAGGGACCG--AT-CGTTG--AAGTCTCTTGTGGTCCCA-AAGAGCA-CTTTT-AGAGG-T-TAAGGATGATCTTACTCTGTAG--ACGATT-GACTG-ATAAAGAGGG-ATCC-GCCCTCCAATCTATTGTGC--CTTC-AGCG-A-GAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCA-GGTCACC-TTGG-AGTAACA-AAGACT--CTAAGTAAAA--TAAGNCAGGCATTTTAC-TGGCCTGGGCTACAGA-AAG-ATGT----CA-G-ACA-GTA-TATAGCCGGTTG--TGAGATC-TG-CA-TGAAATCAAAGAGC------CCG-A-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAGAGGGCTGGGACACCTATGGAACGCATAGCA-ATG-GATA-TCGTT-GG-GAACTCTCGCGCACCGACA-GAAACAACAGGTATC-AAGTCGG-AAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAT-TTGCTGTTGAG--GCAAAAC--T-ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCTA-TACATGTGGTGGACAGA
finalCons : GCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACA------TGCAGAATGTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGT-CCATGAAGANT-ATCA--TTAAGGA--TAAAACTGGTCTT-CGTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGCCAAGGGCCATTT-AAAGGA-GGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAA-AGTACGAGCTCAAGAAAAATCAGGGGTCC--GTCAGCAAATG--TGC-AAACTAAAGGAATAACTGCGGAGTAAATGGTTACCTTG-GGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCTA-AAA---------GGATTTATGACAGCCTTT-CAGAAAAACA----CTCCTTGGATCCCATTCGAAAACCAATCAT-AGG-TGCAAGTGGTGAAAC-G-TTAGTTGT-ATATGGTCGAACACAAA-TA-CTCATTAGAGTAGGGAATAAATCNTAT-AACA-TTAC-AGCTGCTATTGCTGACATTAAC--ATGGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACGATCAATGTGGCTG-AGGG---AGAAATAAT-CATTGCGGG-GAAANCTA--TTAAACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGCAA-GGAAAACGT-GCGAGAAATGTATGG-TCATGCCCGATTACAATGAGG-AAAAGTA-ATACAACTGTTGGG-TGTAGCACTTTGGAAATGACTGTTGACG-ACGT-AATAGAAGA---GGAN-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTGGA--GCAAAAGGTGAGAC-CAG---AAAG-C-CTGGAATTGT-CNTCG-GGAGGGACCG--ATGTTG----AAGTCTCTTGTGGTCCCA-AAGAGCA-CTTTT-AGAGG-T-TAAGGATGATCT-ACTCTGTAG--ACGATT-GACTG-ATAAAGAGGG-ATCC-GCCCTCCAATCTAT-GTGC--CTTC-AGCG-A-GAGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACT-GCA-GGTCACC-TTGGA-GTAACA-AAGACT--CTAAGTAAAA--TAAGNCAGGCATTTTAC-TGGCCTGGGCTACAGA-AAG-ATGT----CA-G-ACAG-TA-TATAGCCGGTTG--TGAGATC-TG-CA-TGAAATCAAAGAGC------CCA-A-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAG-GGGCTGGGACACCTATGGAACGCATAGCA-ATG-GATA-TCGTT-GG-GAACTCTCGCGCACCGACA-GAAACAACAGGTATC-AAGTCGG-AAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAT-TTGCTGTTGAG--GCAAAACT---ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCTA-TACATGTGGTGGACAGA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTACATAATAAAAACCCACACAACTCTGTACCACCCACAATCGGACGGAATATACCGGTGGCCGATATTTTTTCAGTATATATATCAACGACCATAATGGTAACTGGGACAAGCACCTTCCCTATGCAATATGATGACCTACAGATGTGCAGCTAGTCTACGAGACCACGGGTGCTACTCCAAATAAAATGACGCTGGGCCGTGAAATGTCTACACCCACTAGACATTGCGTACGAAATGCCACAGGAAATTAAACGTATTCCTCAAAATGCATGGGCATGGCATTTGCAGGAAAGATTGGAAGAAGCGCATGCTGCAGTTAAAGAAATTACAAAAGATAGCATCCAACGACAAAAGTGGAATCACGACAGAAAATTAAACTGGCAAACTTTCCATGCTGGTGATCTTGTGTGTTTACTTTCCAAATCGTAAGATTGGAATATCATCTAA
Unaligned ( gi|13 ): ATCTCGGTGAGCTCAATCGCTACTGATCAGAGACATTGAGGCTAAATGGCCTCAATACCGAAGTCGAACCCCAGCTTCCGTTGGACCACTCAACACCACGATGCCAAGTGATAAGCGCACGGAAATTGTCTTGCAAGGCGAGTCTGTATCACTACAATGAAATATGTTGCAAAACCAAAACTGAGTACACCTCTGGATAAAGATAAACGAAAATCTGTGAAATTCCAGTCAGATGATGCACAATACGACATGAGCAAATACCTACCTAAAGATGAGCAGTTCGAAAGCATGTCCACTTTGCATTGACTTCTAGATGACTTTAATGTAACAATGAGAAATAAAATGTGGATAAGAAAAAATGAACAAGAACGAGGTCGTGCTCACAATGATATACCATCTAGATTGCCGATGAAA
Unaligned ( gi|14 ): AATGTTGGGAAGAGAGGTCAGAACACCTTGACATTGCATTTAAAATTCCAGCAGCTTTGAAAAGAATGCCTATCCAACAATGGGTTTGGGAGCTCAAGGAAAAGCTGGAACTGGCGCAATCATTTGTGCGGGAAAATCATTAAATGCCATCGGTTCCATCCTACGACAAAAGAGTCTTTATGATACAAAATTAAATTGGCAAATCTTTAAAAAATGAGATGAATTATACATACACTTCCCACAATATGCCGAGAGGGAAGTCTCGTAGTAATTACGTTGACTCAATTTTGGCGGGGTCCTTTTGTAGTGGAAGAAAAGTGTTCTGAAGTGAATGGGCCTTACGGAAAATTTCAAATCATACATGTAGAGACCGCAT
Unaligned ( gi|16 ): CCTATAGGTCGGTAGAACATGAAACAACATGATGCAGTCTAAACTACTTAATGCTCGGAAGAGAAGTTGGAGCACCAATTGACCTCATGTACGAAATGCCAACCAGTATAAAGAGAATTCCAGAAAACCAATGGGCTTGGGAATTGAAGGAACGAATGGAGATTGCTCACAGAATAGCTAGACAGAATGCTAATGAGGCGATGCTACGACAGAAATCTTTGCATGATCATAAGCTTAACTGGCAAACATTTAAACCTGGTGATGAAGTATATGTA
Unaligned ( gi|17 ): CATCTTTTGGTTGGGGGGGTGGGGCACGGTATCTATTGAACAATGATCTGAGTGAGCTTCAAAGCTACTATAAGAGAAGATTAGGACAAATTAGTCAATTACGAAGTCGACATTCGTTAGAACCTCAAACTCGAATGCCAAAGTATCAGCACAGGTAATTTCTGGCAAGCGTATCTGTGATCACTACAATGAATCTGTTTTGGCAAGACCAAAACTCTGAGTAACCTTGAGGATAAAGGATTAAACGAAAAT
Unaligned ( gi|20 ): TTTGCCATTTCTTTTGCAGAATATGCCTACAAGAACAAATGTTGTGAGAAACAGCAATGATACGAGCTCAACATTCGTAATGAATATCTTGTAATATTTGAAATGCTCCTATTAAATTTCATTTTATAAATTTTCATTGTTGAGTTTATGCGAGCACG
Unaligned ( gi|22 ): CAGATTATGAAACATAAAGTTTGCCATTTCTTTTGCAGAAGATGCCTGAAAGAACAAATGCTTTGAGAAAAAGCAACAATACGAGCTTAATTTGCTATTATAGATATGTTGTAAATATTTGAAATGCT
Unaligned ( gi|26 ): ACGACAAAAATGATATCGCGACAGAAAAATATACTGGCAAACCTTTCATGATGTATACGTTTACTTTCCAAAATGTAAAATTGGCACATTACCT
Unaligned ( gi|27 ): ATCTTTGTTTGTAAGGGTTATGAATCCTGGGTAATTTGAGCGATAATGAGCAGCTTTACAGTGAACTTACGCGTGCTCTCA
Alignments
lowQualScore : 444444 22222 1 1 1 11 1 11 1 11 111 1 11 222222222 111 2222 111 111 1 1 111 11 111 222 111 1 1 111 1 11 11 111 22 11 1 11 11 1 11 1 111111 1111 1111 222222 11 1 1 1 1
lowQualScore : 666666 00000 8 0 0 6 1 0 99 99 5 3 6 6 44 9 3 99 6 3 6 3 66 00 555 99 6 1 1 9 6 55 6 77 5 5 0 5 5 88 666666666 1 6 111 5555 3 1 8 8 0 222 8 111 1 8 8 8 888 1 3 6 3 6 1 2 77 111 6 6 1 11 8 444 8 0 444 1 8 0 5 8 1 0 3 6 6 6 6 8 8 444 99 2 0 0 777 0 33 2 11 0 0 8 444 8 8 0 11 8 1 8 00 88 2 11 0 1 6 8 8 8 8 0 8 0 5 11 3 8 8 11 8 8 6 8 11 6 3 6 7 999999 6 3 6 6 6 77 99 6 99 99 1 6 6 6 4444 6 6 77 6 7 99 4 6 1111 3 333333 11 8 8 8 6 22 0 8 8 8 8 0 66 6 0 0 6 5 1 0 5 77 4 77 8888 1 5 5 77 0 5 0 5 6
lowQualScore : ...... ..... . . . . . . .. .. . . . . .. . . .. . . . . .. .. ... .. . . . . . .. . .. . . . . . .. ......... . . ... .... . . . . . ... . ... . . . . ... . . . . . . . .. ... . . . .. . ... . . ... . . . . . . . . . . . . . . ... .. . . . ... . .. . .. . . . ... . . . .. . . . .. .. . .. . . . . . . . . . . . .. . . . .. . . . . .. . . . . ...... . . . . . .. .. . .. .. . . . . .... . . .. . . .. . . .... . ...... .. . . . . .. . . . . . . .. . . . . . . . . .. . .. .... . . . .. . . . . .
lowQualScore : 000000 00000 0 0 8 7 0 0 22 22 3 2 7 7 00 3 3 33 7 5 7 3 77 33 888 22 7 7 7 8 7 88 7 99 7 7 1 7 7 88 777777777 0 7 777 0000 2 4 0 0 8 444 0 000 0 0 0 0 777 0 3 7 3 7 0 5 77 777 7 7 0 00 0 222 0 8 666 4 0 8 6 0 4 6 8 7 7 7 7 0 0 000 00 5 0 0 555 0 88 5 00 8 8 0 000 0 0 8 44 0 0 0 22 88 2 00 8 4 0 0 0 0 0 8 0 8 0 00 2 0 0 22 0 6 0 0 00 7 3 7 3 222222 7 2 7 7 7 77 88 7 22 22 0 7 7 7 2222 7 7 77 7 8 22 2 7 3333 8 000000 88 0 0 0 0 22 6 0 0 0 0 0 00 5 2 0 7 7 6 1 7 00 3 99 0000 7 0 7 99 7 7 4 7 7
consensus : GCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAG-----AAT-GTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGT-CCATGAAGANT-ATCA--TTAAGGA--TAAAACTGGTC-TCGTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGCCAAGGGCCATTT-AAAGGAGGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAA-AGTACGAGCTCAAGAAAAATCAGGGGTCC--GTCAGCAAATG--TGC-AAACTAAAGGAATAACTGCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCC-TTTCAGAAAA---ACA---ACTCCTTGGATCCCATTCGAAAACCAATCAT-AGG-TGCAAGTGGTGAAAC-G-TTAGTTG-TATATGGTCGAACACAAA-T-ACTCATTAGAGTAGGGAATAAATCNTAT-AACA-TTAC-AGCTGCTATTGCTGACATTAA-C-ATGGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACGATCAATGTGGCTG-AGGG---AGAAATAAT-CATTGCGGG-GAAANCTA--TTAAACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGCAA-GGAAAACGT-GCGAGAAATGTATGG-TCATGCCCGATTACAATGAGG-AAAAGTA-ATACAACTGTTGGG-TGTAGCACTTTGGAAATGACTGTTGACG-ACGT-AATAGAAGA---GGAN-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTGGA--GCAAAAGGTGAGAC-CAG---AAAG-C-CTGGAATTGT-CNTCG-GGAGGAACCGA-TGCTG--AAGTCTCTTGTGGTCCCA-AAGAGCA-CTTTTA-GAGGT-T-AAGGATGATC-TACTCTGTAG--ACGATTG-ACTG-ATAAAGAGGG-ATCCG-CCCTCCAATCTATT-GTGC--CTTC-AGCG-AG-AGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACTG-CA-GGTCACC-TTGG-AGTAACA-AAGACT--CTAAGTAAAA--TAAGNCAGGCATTTTACTGG-CCTGGGCTACAGA-AAG-ATGT----CA-G-ACA-GTAT-ATAGCCGGTTG--TGAGATC-TGC-AT-GAAATCAAAGAGC------CC-AA-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAG-GGGCTGGGACACCTATGGAACGCATAGCA-ATG-GATA-TCGTT-GG-GAACTCTCGCGCACCGACA-GAAACAACAGGTATC-AAGTCGG-AAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAT-TTGCTGTTGAG--GCAAAAC--T-ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCTA-TACATGTGGTGGACAGA
Reference ( family-2031 ) : GCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATG------CAG-----AAT-GTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGT-CCATGAAGANT-ATCA--TTAAGGA--TAAAACTGGTCTTCGTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGCCAAGGGCCATTT-AAAGGAGGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAA-AGTACGAGCTCAAGAAAAATCAGGGGTCC--GTCAGCAAATG--TGC-AAACTAAAGGAATAACTGCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCC-TTTCAGAAAA---AC----ACTCCTTGGATCCCATTCGAAAACCAATCAT-AGG-TGCAAGTGGTGAAAC-G-TTAGTTG-TATATGGTCGAACACAAA-T-ACTCATTAGAGTAGGGAATAAATCNTAT-AACA-TTAC-AGCTGCTATTGCTGACATTAA-C-ATGGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACGATCAATGTGGCTG-AGGG---AGAAATAAT-CATTGCGGG-GAAANCTA--TTAAACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGCAA-GGAAAACGT-GCGAGAAATGTATGG-TCATGCCCGATTACAATGAGG-AAAAGTA-ATACAACTGTTGGG-TGTAGCACTTTGGAAATGACTGTTGACG-ACGT-AATAGAAGA---GGAN-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTGGA--GCAAAAGGTGAGAC-CAG---AAAG-C-CTGGAATTGT-CNTCG-GGAGGGACCGA-TGTTG--AAGTCTCTTGTGGTCCCA-AAGAGCA-CTTTTA-GAGGT-T-AAGGATGATC-TACTCTGTAG--ACGATTG-ACTG-ATAAAGAGGG-ATCCG-CCCTCCAATCTA-T-GTGC--CTTC-AGCG-AG-AGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACTG-CA-GGTCACC-TTGG-AGTAACA-AAGACT--CTAAGTAAAA--TAAGNCAGGCATTTTACTGG-CCTGGGCTACAGA-AAG-ATGT----CA-G-ACA-GTAT-ATAGCCGGTTG--TGAGATC-TGC-AT-GAAATCAAAGAGC------CC-AA-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAG-GGGCTGGGACACCTATGGAACGCATAGCA-ATG-GATA-TCGTT-GG-GAACTCTCGCGCACCGACA-GAAACAACAGGTATC-AAGTCGG-AAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAT-TTGCTGTTGAG--GCAAAAC--T-ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCTA-TACATGTGGTGGACAGA
gi|1 : CA--TTAAGGA--TAAAACTG----TCGTCAGAATTGGTGGAAAAACTATCACCT-GCCAT-AATTGTGGTGGCTAAGGGCCATTA-AAAAG-GGGAATGATAAACAAAATCTAAAATTGCTGCGAGTAA-AGTAC--ACTCAA-AGAAATC-GAGGTTCGGGTCAGCAAATGGTCGC-AGACT-AAGTAATA--CGCGGAGAAAATGGTTACCTT--GGAGTA-CTGGACTCTTTCTTG--AGACCTGTTGCTTGAGAAAAGTAAATGCCT-CATTAATCGTCGATACCGGTTGCATCACT-ACAATCTTGTCT--AAA---------GGATTTATGACA-CC-CGTCAGAAAA---ACA---ACCCCTT-GAT-CCATTAGAAAGCCTATCAT-AGGTTGCAA-TGG-GAAAC-A-TTAGTTG-TATATGGTCGAACACAAATT-ACTCATTAGAGTAGGGAATAAATCATATAAACATTTACAAGCTGCTATTGCTGACATCAA-CAATTGA-GGAGTTCTA-GACTTGACTCGTATGAGCCAGTTAACAACTGCCACGATCAATGTGGCT---GTG---AAAAATAAT-CATTGCGGG-GAAAACTATTTTAAACT-CTTAAAAA----GGGCATT-ATGGATGCCGC-A-GTAAAACGT-GCGAGAAATGTATGGTTCATGCCCGATT-CAATGAGGTAAAAG-A-ATACAACTGTTGGGTTGTAGCACCTT-GAAAGGACTGTTGACG-AGCT-AATAGAAGA---GGAC-AGA-CCCTAT-CTGTTCTCCATGAAAAAAACCG-ATGTTGATAAATAAGCAAAGTAA-GAGTTGGTTGGA--GCAAAA-GTGAGAC-CAG---AAAG-C-C-GGAATTGTCCTTCG-GGAGGA--CGA-TGCGT--AAGTCTTCTGTGGTCCCA-AAGAGCACCTTTTA-GAGGT-T-AAGG-TGATT-TACTCTGTAGAAACAACTG-ACTG-ATAAAGAGGGAATCCA-CCCTCCAA-CTATT-GTGCCTCTTC-AGCG-AG-AGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACTG-CATGGTCACC-TTGGTAGTACAA-AAGACTGGTTAAGTAAAA--TAGGGCAAGCA-TTTATTGG-CCT-GGCTACAAAGAAG-ATGT----CAGG-ACA--TAT-AT--CCGGTTT--TGAAATC-T-C-AT-GAAATCAAAGAGC------CCGAA-ACAAAACTATGAG-ATCACCAATGCAGCCTCGTAA-GGGCT--GACA--TA-GCAATGCTGAG---ACA-GATAGTCGTT-G
gi|1 : cttatttgattagtacgccttcgcatgaagaaaatggaagaaagtcaagtcaatataagttcagaattacttagttcaCAAGTATC-AAGTCGG-AAAATCCCCCAAAGCTACACAGTTTTGGAGAGGTTTCAT-TTG-TGTTGAG--GCAAAAA--TAATCAGAT-TT-AACTTACAAAGTTAGATTTGTGGTTCAAAGAGT-AAATC-CAAGTTATTACATGTGGtatgaccagagacttctctgcaatcttcaaattcctggtgatgaaagtttatgtgtattttccaaggcaagtatcaagtcggaaaatcccccaaagctacacagttttggagaggtttcatttgtgttgaggcaaaaataatcagatttaacttacaaagttagatttgtggttcaaagagtaaatccaagttattacatgtggacgaatgtgtctcaaaagaagacaggaactgtcacataaaattatgttgaaaaagaaaactcagatgattttaccagagtaacagatcaatctggtttcagatgaagggtacacagattatgacgatacaagtctgagcaaatatacgctagtttgagaaagtaattgtctcattcctgaagcgagattaagaaaccaccaaagtggtatcacattatgaaacatataagtgtgtcatttccctgcaagaaaaataaggctgtgagaaacagcaacgataagagttaattcgctatatatatgatgcaaatatgaaatgttcaagatttaaaaaaatcatttgataacttgaccagtatcgat
gi|10 : cttatttgattagtacgccttcgcatgaagaaaatggaagaaagtcaagtcaatataagttcagaattacttagttcacattaaggataaaactgtcgtcagaattggtggaaaaactatcacctgccataattgtggtggctaagggccattaaaaaggggaatgataaacaaaatctaaaattgctgcgagtaaagtacactcaaagaaatcgaggttcgggtcagcaaatggtcgcagactaagtaatacgcggagaaaatggttaccttggagtactggactctttcttgagacctgttgcttgagaaaagtaaatgcctcattaatcgtcgataccggttgcatcactacaatcttgtctaaaggatttatgacacccgtcagaaaaacaaccccttgatccattagaaagcctatcataggttgcaatgggaaacattagttgtatatggtcgaacacaaattactcattagagtagggaataaatcatataaacatttacaagctgctattgctgacatcaacaattgaggagttctagacttgactcgtatgagccagttaacaactgccacgatcaatgtggctgtgaaaaataatcattgcggggaaaactattttaaactcttaaaaagggcattatggatgccgcagtaaaacgtgcgagaaatgtatggttcatgcccgattcaatgaggtaaaagaatacaactgttgggttgtagcaccttgaaaggactgttgacgagctaatagaagaggacagaccctatctgttctccatgaaaaaaaccgatgttgataaataagcaaagtaagagttggttggagcaaaagtgagaccagaaagccggaattgtccttcgggaggacgatgcgtaagtcttctgtggtcccaaagagcaccttttagaggttaaggtgatttactctgtagaaacaactgactgataaagagggaatccaccctccaactattgtgcctcttcagcgagagacgacatatactcaattatagccatgaccataaaactgcatggtcaccttggtagtacaaaagactggttaagtaaaatagggcaagcatttattggcctggctacaaagaagatgtcaggacatatatccggttttgaaatctcatgaaatcaaagagcccgaaacaaaactatgagatcaccaatgcagcctcgtaagggctgacatagcaatgctgagacagatagtcgttgtatgaccagagacttctctgcaatcttcaaattcctggtgatgaaagtttatgtgtattttccaaggAGTTGGTTGGAAAGCAAGAGC--AGTCTCAGTCTAAAGAC-CTCAA-------CTCA-GAAGGAGTCG--TGATC--AAATTTCCT-TGGACACAGAAGA-TA--TGCTA-GTTAT-T-CTGGAT-ATG-T--TGTTTAG--ATGACTG-AAAA-ATAAAGACAA-AGCAG-TGATCCAATGAA-T----------C-AGCGTAG-AAATG-----TCCTCCAGTA------TACTCATGAT-CA-GA-AGCCG-CA-GGTCATT-TAGG-CATCAGA-AAAACC--CTGAGCAAAA--TAAGACAGTCTTACTACTGG-CCTGGGCTGCAGA-AAG-ATGT----AC-G-CCA-ATAC-ATTGCAGGCTG--TATGGTT-TGC--------TCAAGGCGCAAGTATCC--A-ACAAAACTAAACG-CGCACCAATACAA-ATAGTTG-GAGCCGGT-TTCCAATGGAACGAGTAGCACATG-GACA-TCCTT-GGTGAA---TTACCTA-CAACA-GAAACAacgaatgtgtctcaaaagaagacaggaactgtcacataaaattatgttgaaaaagaaaactcagatgattttaccagagtaacagatcaatctggtttcagatgaagggtacacagattatgacgatacaagtctgagcaaatatacgctagtttgagaaagtaattgtctcattcctgaagcgagattaagaaaccaccaaagtggtatcacattatgaaacatataagtgtgtcatttccctgcaagaaaaataaggctgtgagaaacagcaacgataagagttaattcgctatatatatgatgcaaatatgaaatgttcaagatttaaaaaaatcatttgataacttgaccagtatcgat
gi|12 : cgataatgacaaggatataCA--TTAAGGACTTAAAACTGGTC---GGCAGTATGTGTCGAAAAAC-ATCACCTTGCCATTAATTGTGGTGGGCAAGGGCCATAT-AAAG-AGGAATTG-TGAAGAA-ATCTAAAAATGCTGTGAGTAA--GTACG--CCCAAGAA----CAGAGGTT---GTCAGCAAATG--TGCCAAAC-AATGG--TAACTGCGA--TAAATG-TTACCTT-GG-AGTAACTGGACTCTTTTCTGGGAGACC-GTTG-TGGAGAAAG--AACTGCATGCATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAAAAAGGGGGGGAATTTATGACAACC-TTTCAGAAAAGAAAC----ACTCCTTGGATCCCATTCGAAAATCAATCAC-AGG-TGCAAGTGGTGAAACTGTTTAGTTG-gatacatctttagtaatatcagactattttaccaagtggacggaaaccattgctattgccaaagatcgagaaaagaactggtgcagatatatcattaaagaaacattgacaatattcggag
gi|15 : gatgacgtaaaatggagaaacaatcaagtcaattgaggtccagcaatacttgatcaA---------GGATTTATGACAGCC-GTTCAGAAAA---AC----ACCCCTTGGATCCCATTAGAAAGCCTATCAT-AGG-TGCAAGTGGTGAAAC-A-TTAGTTG-TATATGGTCGAACACAAA-T-ACTCATTAGAGTAGGGAATAAATCATAT-AACA-TTAC-AGCTGCTATTGCTGACATCAA-C-ATTGATGGAGTTCTAGGACTGGACTT-CATGAG-CAG-TAACAACTG-CACGATCAATGTGGCTG-TGAG---AGAAATAAT-CATTGCGGG-GAAAACTA--TTAAACT-CTTAAAAAG--TGGGCATT-ATGGATGCCGC-A-GGAAAACGT-GCGAGAAATGTATGG-TCATGCCCGATTGCAATGAGG--AAAGTA-ATACAACTGTTGGG-TGTAGCACCTTGGAA
gi|18 : TC-AGCATAG-AAACG-----TCTTCCAGTA------TAGTCATGAT-CAGAA-GACAG-CA-GATCAT--TTGG--GCATCAGAAAACC--CTGAGCAAAA--TAAGACAGTCTTACTACTGG-TCCGGGTTTCAGA-AAG-ATGTACGCCA-ATACATGTAC-ATTGCAGGTTG--TATGGTT-TGC-
gi|19 : agcagtgattccaatgagAGGTATC-AAGTCGG-AAAATCCCCAAAGCTTACACAGTTTTGGAGAGG-TTCAT-TTGCTGTTGAG--GCAAAAA--T-ATCAGAT-Ttcaaaacgcaagcatcca
gi|2 : tgctgagacagaagtcgttgtatgaccagagactctactggcaatcattcaatcctggtgatgaagtttatgtgtattttccaattgcaGCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAG-----AAT-GTCAATA-AGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACTCCAGT-CCATGAAAAAT-ATCA--TTAAGGA--TAAAACTAGTCTTCATCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT--ATTGTGGTGGCCAAGGGCCATTTAAAAGAAGGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAACAGTACGAGCTCAAGAAAAATCAGGGGTCC--GTCAGCAAAGG--TGC-AAACTAAAGGAATGAC-G-GGAGTAAATGGTTACCTTCGGGCGTA-CTGGATTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTCT-AAAA---------GGATTTATGACAGCCTTTTCAGAAAA---ACAACTACTCCTTGGATTCCATTCGAAAACCAATCACGAGG-TGCAAGTGGTGTAAC-G-TTAGTTGTTATATGGTCGAACACAAA-TAACTAATTAGAGTAGGGAATAAATCTTAT-AACA-TTAC-AGCTGCTATTGCTGACATTAA-C-ATGGATAGAGTTTTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-TACGATCAATGTGTCAG-AGGG---AAAAATAAT-CATTGCGGATGAAACCCA--TTCGACT-CTTAAAAAG--TGGACATTAATGGATGCCATAA-GAAAAACAT-CCAAGAAATA-AT-G-TTATACCCAAGTACAATGA-G-AACAGTA-AT---ACTCTTGGG-TGTAGCACTTTGGAAATGACTGTTGACGAACGT-AATAGAAGA---GGAG-AGACCCCTATCCTGTTCTCCA-GAAAAA---CG-ATGTTG--AAATCAGCAAAGTAAGGCGTTGGTTGGA--GC-AAAGGTGAGAC-CAG---AAAG-C-CTGGAATTGT-CATCGAGGAGGGACCGATTGTTG--AAATCTCTTGTGGTCCCACAAGAGCA-CTTTTA-GAGGTGT-AAGGATGATCTTACTCTGTAG--ACGATGG-ACTGAATAAAGAGGG-ATCCG-CCCT-CAATCTATT-GTGC--CTTC-AGCG-AG-AGACGACATATACTCAATTA------TAGCCATGAC-CATAA-AACTG-CA-GGTCACCGTTGG-AGTGACA-AAGACT--CTAAGTAAAA--TAAGGCAAGCATTTTATTGG-CCTGGGCTACAAA-GAA-ATGT----CA-G-ACA-GTAG-ATAGCCGGTTG--TGAGATC-TGC-AT-GAAATCAAAGAGC------CC-AA-ACAAAACAATGAGAAGCATCAATACAG-CGCGTAGAGGGCTGGAACACTTATGGAACGCATAGCA-ATGTGATG-TTGTT-AG-GAACACTCGCGCACCGACA-GAAATAACAGGTATCAAAGTCGGAAAAATCTCCAAAGCTT--ACAGTTTTGGAGAGG-TCCAT-TTGCTTTTGAG--GCAAAAC--T-GTC-GAT-CGAAACTTACAAGGTTAGA--TGTGGTTCAAAGGGTAAAATCTCAAGTTA-TACATGTGGTGGACAGA
gi|21 : CTGTGGAACTCGAGGCATATTTCGAGGCAGTGGGAAAACTTCGAGAGTCTAAAGGATACATG------TAGTTGCAAATCGTCGATACCGCTGACAATACACCACTTAAAGAAACCGACAACATACACTTCATCTTGGATGAGTTACGCCAGT-CCATGAAGActcatc
gi|23 : GCTGAACTTGC-C-ATGGATGGAATACTCAGTTTGGACTT-TATGCA-CAGAAAACCATTG-CACCATCAAT----CTACAAGA---AGAAATAATGCTTTGTGGA-AAA
gi|24 : ctgtggtaAT-AT-AACTTTAAAACTTG----TGTGGTTTAGAGGGT-GAATCTCAGTTTA-TTCATc
gi|25 : acgatcagaaactctactgacagtcattcaaacccgctgacgaagtttac--AGACC-GTTG-TTGAGAAA-GTAAATGCCT-CATAACTCGTGGATACCGG-TGCATTACTGACAATGTTGTCTAAAAA---------GGATTTATGACAGCC-TTTCAGTAAA---Atttg
gi|3 : CAATGAGG-AAA-GTA-ACACAACTGCTGGG-TGTAGCACTTTGGAAATGACTGTTGACG-ACGT-AATAGAAGAAGAGGAG-AGACCCCTAT-CTGTTCTCCA-GAAAAA---CG-ATGATG--AAATCAGCAAAGTTAGGAGTTGGTTGGA--GCAAAAGGTGAGAC-CAG---AAAG-C-CTGGAATTTT-CTTCG-GGAGG-ACCGA-TGCTG--AAGTCTCT-GTGGTCCCA-AAGAGCA-CTTTTA-GAGGT-T-AAGGATGATC-TACTCTGTAG--ACGATTG-ACTG-ATAAAGAGGG-ATCCG-CCCTCCAACCTA-TTGTGC--CTTCCAGCG-AG-AGACGACATATACTCAATTACATGTATAGCCATGAC-CATAA-CACTG-CA-GGTCACC-TTGT-AGTGACC-AAGACT--TTAAGTAAAA--TAAGTCGGGCATTTTACTGG-TATGGACTACAGA-GAA-ATGT----CA-G-ACA-GTAT-ATAGCCGGTTG--TGAAATC-TGC-AT-GAAATCAAAGAGC------CC-GA-ACAAAACTATGAG-AGCACCAATGCAG-CTCGTAG-GGGCTGGGACACCTATGGAACGCATAGCA-ATA-GATA-TTGTTGGG-GAACTCCCGCGCATCGACA-GAAACAACAGATAT
gi|3 : CAGGTATC-AAGTCGG-GAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAG-TTGCTGTTGAG--GCAAAAC--T-ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCCA-TACAT---GTGGACAGAattttagttgtttctgattattttaccaaatgggtggaggcatttgcaatgccaaatatggaagcagtggcagatatagttgcaaaagaagtcgttacaaggtttggggttccatgtgtcatacattcagactaaggaaagcaatttgaaggcaaattgttcacaaaaatgtgcaaagttctgaacattaaaaagaccggtacaacgccctaccgtcccccatcagacgggatggtggagcgattcaataagactatgctatcaatgcttcgcaccttggtggacgagaaccagatgaactgggacgggctcctcccattcattctgatgacatacagatctgtagaacaggagactacagaatgcagtccaaactatcttatgtttggaagagaagtagcaactcctgtggaggtcatgtaccgaatgcccaatttaatgaggaatattcccccaatcagtgggcatgggagttgaaagagaagctagaaactgctcacagctttttgagacagcacacaacacaagctatgctgagacagannnnnnnnnnnnnnnnnnnnnnntgctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttcccaggtatcaagtcgggaaatctccaaaacttacacagttttggagaggtccagttgctgttgaggcaaaactatcagatttaacttacaaagttagatgtggttcaaagggtaaatctcaagccatacatgtggacagaatgcgtctcaaaagactcaaaagaaggcagga
gi|4 : caatgaggaaagtaacacaactgctgggtgtagcactttggaaatgactgttgacgacgtaatagaagaagaggagagacccctatctgttctccagaaaaacgatgatgaaatcagcaaagttaggagttggttggagcaaaaggtgagaccagaaagcctggaattttcttcgggaggaccgatgctgaagtctctgtggtcccaaagagcacttttagaggttaaggatgatctactctgtagacgattgactgataaagagggatccgccctccaacctattgtgccttccagcgagagacgacatatactcaattacatgtatagccatgaccataacactgcaggtcaccttgtagtgaccaagactttaagtaaaataagtcgggcattttactggtatggactacagagaaatgtcagacagtatatagccggttgtgaaatctgcatgaaatcaaagagcccgaacaaaactatgagagcaccaatgcagctcgtaggggctgggacacctatggaacgcatagcaatagatattgttggggaactcccgcgcatcgacagaaacaacagatatattttagttgtttctgattattttaccaaatgggtggaggcatttgcaatgccaaatatggaagcagtggcagatatagttgcaaaagaagtcgttacaaggtttggggttccatgtgtcatacattcagactaaggaaagcaatttgaaggcaaattgttcacaaaaatgtgcaaagttctgaacattaaaaagaccggtacaacgccctaccgtcccccatcagacgggatggtggagcgattcaataagactatgctatcaatgcttcgcaccttggtggacgagaaccagatgaactgggacgggctcctcccattcattctgatgacatacagatctgtagaacaggagactacagaatgcagtccaaactatcttatgtttggaagagaagtagcaactcctgtggaggtcatgtaccgaatgcccaatttaatgaggaatattcccccaatcagtgggcatgggagttgaaagagaagctagaaactgctcacagctttttgagacagcacacaacacaagctatgctgagacagannnnnnnnnnnnnnnnnnnnnnntgctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttccGCTGTGGAACTCCAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGGCTAAAGGATACATG------CAG-----AAT-GTCAATACAGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACGCCAGTCCCATGAAGAatgcgtctcaaaagactcaaaagaaggcagga
gi|4 : ttggggcagcggtgggatcatattgaacaatgaatctcagtgagctcaacgctactataagagaaattgaggctaaattaggctcaatacgaagtcgcaactccgttagaccatcaacacctcgagtgccaaagtatcagagcacggaattttctgcatgcgattctggtatcactacaatgatatctgttgcaagaaccaaatctgagtacacctgaggataaagataaacgaaaatctgtgaaatttcagtcagatgatgcaaaatacgacctgagcaaatacctacctaaagatgagcagctcgagagcatgtccactttgcattgcacctctagagacattaatgtaacaatgagaaataaaacgcggaaaagaacaaatgagcaagaacgagctcgtgctcaaaatgatataccatctagattgccgataaaatctgaggagcctatgcgtataaaagtaaagcctgctacttatgatggtaccacaccatggcttgatttcagatctcatttgaggcgtgcgctaagcttggacgatggagtgaggaggagaaaggtctctatctttctatgtccttacgagggctggcacaagggatcctaggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaaaaccgctttgctcctcccgatcaaatggaactttataggatacaactgagggagagagaacaggaagcgtccgagtcattaccagaactcggacagcatattaaggcggctcacaaatctcgcctaccctactgtccctgctgatggcgagaaacgctgtcaaaagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtattaagcaggcaaggcctgttaatctcaacgatgcgttaaacacAGT-CCA-GAATACTTATCACATTAAGGA--TAAAACTAGTCGTCG--AGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGC-AAGGACCATTT-AAAGG--GGAATG-TAACAAATCT--AAAAATGCTGCGAGTAA-AGTACAGGCTCAAGAAA--TCAGGG-TTC--GTCGGCAAATG--TGC-AAACTAAAGGTA-AACTGCGGAGTAAATGGTTACTT---GGAGTA-CTGGACTCTTTCTTG--AGACC-GTTG-TTGAGGAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGTaaaggaagaaaagatcaagtcaattaagtccagaatacttatcacattaaggataaaactagtcgtcgagaattggaggaaaaacatcacctgccataattgtggtggcaaggaccatttaaaggggaatgtaacaaatctaaaaatgctgcgagtaaagtacaggctcaagaaatcagggttcgtcggcaaatgtgcaaactaaaggtaaactgcggagtaaatggttacttggagtactggactctttcttgagaccgttgttgaggaaagtaaatgcatcattactcgtcgataccggtgcatcactgacaatcttgt
gi|5 : ttggggcagcggtgggatcatattgaacaatgaatctcagtgagctcaacgctactataagagaaattgaggctaaattaggctcaatacgaagtcgcaactccgttagaccatcaacacctcgagtgccaaagtatcagagcacggaattttctgcatgcgattctggtatcactacaatgatatctgttgcaagaaccaaatctgagtacacctgaggataaagataaacgaaaatctgtgaaatttcagtcagatgatgcaaaatacgacctgagcaaatacctacctaaagatgagcagctcgagagcatgtccactttgcattgcacctctagagacattaatgtaacaatgagaaataaaacgcggaaaagaacaaatgagcaagaacgagctcgtgctcaaaatgatataccatctagattgccgataaaatctgaggagcctatgcgtataaaagtaaagcctgctacttatgatggtaccacaccatggcttgatttcagatctcatttgaggcgtgcgctaagcttggacgatggagtgaggaggagaaaggtctctatctttctatgtccttacgagggctggcacaagggatcctaggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaaaaccgctttgctcctcccgatcaaatggaactttataggatacaactgagggagagagaacaggaagcgtccgagtcattaccagaactcggacagcatattaaggcggctcacaaatctcgcctaccctactgtccctgctgatggcgagaaacgctgtcaaaagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtattaagcaggcaaggcctgttaatctcaacgatgcgttaaacacgctgtggaactccaggcatatttcaaggcagagggaaaacttcgagcggctaaaggatacatgcagaatgtcaatacagctgacaatgcaccacttaaagaaactgacgacatacactctattttggatgagttacgccagtcccatgaagaaaaggaagaaaagatcaagtcaattaGCTGTGGAACTCGAGGCATATTTCAAGGCAGAGGGAAAACTTCGAGCGTCTAAAGGATACATGTACATGCAG-----AAT-GTCAATA-AGCTGACAATGCACCACTTAAAGAAACTGACGACATACACTCTATTTTGGATGAGTTACTCCAGT-CCATGAAAAAT-ATCA--TTAAGGA--TAAAACTAGTCTTCATCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT--ATTGTGGTGGCCAAGGGCCATTTAAAAGAAGGGAATG-TAAAAAATCTCTAAAAATGCTGCGAGTAACAGTACGAGCTCAAGAAAAATCAGGGGTCC--GTCAGCAAAGG--TGC-AAACTAAAGGAATGAC-G-GGAGTAAATGGTTACCTTCGGGCGTA-CTGGATTCTTTCTTG--AGACC-GTTG-TTGAGAAAAGTAAATGCAT-CATTACTCGTCGATACCGG-TGCATCACTGACAATCTTGT
gi|6 : catatctgttttggtggcagtggtgggaatcatattgaacatgaatttcagtgagtcaacgctactataagagaaattgaggccaaattagtcacatacgaagtcgacactccgtatagaccacatcaaacaccacgagtgccaaagtatcagagcacggaattttctgcatgcagttctggtatcactacaatgaaacagttgcaagaccaaatctgagtacaaccttgaggataaagataaacgaaaatctgggaaatttcagtcagatgatgcaaaatacgacactgagaaataccttacctaaagatgagcagctcgaaagcttgcccactttgcatcgacctctagatgacgttaatgtaacaatgagaaataaaacgcgaaaagaacatgtgagcaagaacgaactcgtgctcaaaaatgatatagcatctagattgccgatgaaatctgaggagtctatgcgtataaaagtgaagcctgctacttatagatggtacacacaccatggcttgatttcagatctcaacttttgaggcgtgcgctaagcttagacgatggagtgaggaggagaaaggtctctatctttatttgtccttacgagggctggcacaagggatgcataggtaatttgagcgaaaatgagcagcttaactacagtgagcttacgcgtgctctcaatgacgccctttgctcctcccgatcaactttataggatacaaactgagggagagacaacagaaagcgtccgagtcatttgccagaactcggacagcatataagacggctcacaaatctcgcctaccctactgtccctgctgatgtgcaagaaacgctgtccaagagaccaatttatcgatgctctggtcagctcagaaatgcgtctacgtatcaagcaggcaggcctcttaatctcaacgatgccgttagacaccTAT-AACA-TTAC-AGATACTATTGCTGATATTAAAT-ATGGATGTAGGTCTAGGACTGGACTTTCATGAG-CAG-AAACAAATG-CACGATCAATATGTCAG-AAGAGAAAGACATAAA-TATCGCGAT-GAAACCTT--TTGAACTTCTTAAAAAAGCTGGGCATT-GTGA--GCCGCATTGGAAAACGTAGCAAGAAATGTA-GG-AAACACGCATTTACAATGAGG-AAAA-TACGTACAACTGTTGAG-TGTAGCACTTTGAAATTGCCTTTTGACG-ACGTCAATAGAAAG---GGAACAGACCTCTAT-CTATTCTCCA-GAAAAA---CGGATGTTG--AAATCAGCAAAGTAAGGAGTTGGTTAGA--GCAAAAGGTGAGAC-CAG---AAAG-CACTGAAAGTGT-CGTCG-GGAGG-ACCGA-TGTTGGAAAGTCGCTTGTGGACCGA-AAGAGCA-CTTTTAAGAGGT-TTAAGGATGATC-TACTCT-TAG--A-AATTGGACTG-ATAAAGAGG--ATCCAACCCTCCAAGCTA-T-GTGC--CTTA-AGCG-AGGAGACGACATATACTCAGTTG------TAGCCATGACTCATAAGAACTGGCA-GGTCACC-TTGG-AGTAACA-AAGACT--TTAATTAAAAATTAGGCCAAGCATTTTACTTGTCCTGTGCTACAAA-AAATATGC----CA-G-ACA-GTATTATAGCCGGCTGGTTGAG--CATGCCATTGAAATCAA-GAAC------AC-AAGACAAAAACATGAG-AGTACCAATGCAG-CTCGCATCGGGCTGGAACACCTA-GGAACGCATAGCA-ATG-GATA-TTGTT-TG-AAACTCTCGCGCACCTCTATTAAATAACAGTTATC-AAG-CGG-AAAATCTACCAAAC-TACACA-TTTT-GAGAGG-TTC------CTGTTGAGTCGCAAAACAAT-ATCA-AG-TT-AA-TTACAAAGTTAGA--TGTGGTTCAAA--GT-AAATCTTAAGGTA-TACATGTGG
gi|7 : TATTTCAAGGGAGAGGGAAGACTTCGAGAGTCTAAAGGATACATG------CAG-----AAT-GTCAATACAGCTGGCAATGTACCACTTAAAGAAACTGACGACATACACTCTA-TTTAGATGAGTTATGCCAGT-CCATGAAGACT-ATacaaatgcgtctcaaagaagacagggaactgccacaactttctgttttaaaaaaaaaactcaaatgatttgatacccagtaaagcaatagatcaatctgactcagaggtacacaggaataacgatagatgttgtgcgcccaaatagacgatagttttgagaaagaaaagttctaattcctgaaagcgagattacgaaaaccaccaagtggttatcaatttacgaaatcatattaagttttccatttcccttcaatatacaaatgctgttgaggaacagcaatgatacaaagctcatcagaaatgaaatcttgtaaatatttgaaagttcgtatcataattatcatttaaaattgtcattgcttgagttgtgcgagggactcatactttagatgaggcgctggtaatg
gi|7 : CA--TTAAGGA--TAAAACTGGTC---GTCAGAATTGGAGGAAAAAC-ATCACCT-GCCAT-AATTGTGGTGGC-AAGGGCCATTT-AAAG-AGGGAATG-TAAAAAATCT--GAAAATGCTGTGAGTAA-AGTACGAGCCCAAGAAAA-TCAGGGGTC---ATCACCAAATG--TGC-AAACCAATTG--TAACTGCGGAGTAAATGGTTACCTT-GGGAGTA-CTGGGCTCTTTCTTG--AGACA-GTTG-TGGAAAAAAGTAAATGCAT-CATTAATCGTCGATACCGG-TGCATCACTGACAATTTTGTCT-AAAA---------GGATTTATGACAGCC-TTTCAGAAAA---AC----ACTCCTTGGATCCCATTCGAAAACCAATCAT-ATG-TGCAAGTGGTGAATC-G-TAAGTTG-TATATGGTCGAACACAAA-T-ACTCATTAGAGTAGGGAATAAATCTTAT-AGCA-TTAC-AGTTGCTATTGCTAACATTAA-T-ATGGATGGGGTTTTAGGACTGGACTT-CATGAG-CAG-AAACAACTG-CACAATCAATGTGGCTG-AGAG---AGAAATGAT-CATTGCGGG-CAAAGCTA--TTAAACT-CTTAGAATG--TGGGCATT-ATGGATGCCAC-A-GAAAAACAT-ACAATAAACGTAGGG-TTATGTCCGAGTACAATGA-G-AAAAGTA-ATACAACTGTAGGG-TGTAGCACTTTGGATATGACTATTGACG-ACAT-AATAGAAGA---GGAC-AGggaggaaaagatcaattcatttgactgatttgaggtccaaattacttatcacattaaggataaaactggtcgtcagaattggaggaaaaacatcacctgccataattgtggtggcaagggccatttaaagagggaatgtaaaaaatctgaaaatgctgtgagtaaagtacgagcccaagaaaatcaggggtcatcaccaaatgtgcaaaccaattgtaactgcggagtaaatggttaccttgggagtactgggctctttcttgagacagttgtggaaaaaagtaaatgcatcattaatcgtcgataccggtgcatcactgacaattttgtctaaaaggatttatgacagcctttcagaaaaacactccttggatcccattcgaaaaccaatcatatgtgcaagtggtgaatcgtaagttgtatatggtcgaacacaaatactcattagagtagggaataaatcttatagcattacagttgctattgctaacattaatatggatggggttttaggactggacttcatgagcagaaacaactgcacaatcaatgtggctgagagagaaatgatcattgcgggcaaagctattaaactcttagaatgtgggcattatggatgccacagaaaaacatacaataaacgtagggttatgtccgagtacaatgagaaaagtaatacaactgtagggtgtagcactttggatatgactattgacgacataatagaagaggacag
gi|8 : tatttcaagggagagggaagacttcgagagtctaaaggatacatgcagaatgtcaatacagctggcaatgtaccacttaaagaaactgacgacatacactctatttagatgagttatgccagtccatgaagactatggaggaaaagatcaattcatttgactgatttgaggtccaaattacttatcaCAGGTATC-AAGTCGG-GAAATCTCCAAAACTTACACAGTTTTGGAGAGG-TCCAG-TTGCTGTTGAG--GCAAAAC--T-ATCAGAT-TT-AACTTACAAAGTTAGA--TGTGGTTCAAAGGGT-AAATCTCAAGCCA-TACAT---GTGGACAGA
gi|9 : gctgagacaaaagtttttgcatgaccagaaactgtattggcaatcattcaattccggtgatgaagtttatgtgtactttccGTTGG-AAAAGTTCCTAAACTGAAATAGTTCTAGAG-GG-TTTATATTG-TGTGAAA--GATAAAT--G-ATCTGGTATC-CACT-ACAAGGTAAAT--TGTTGTCCATACGGA-AAATCTCAAGCTA-TTCATGatgcgtctcaaaagactcaaaagaaggcaggaactgtcacatgaaagattctgtctgtagatgtgagagcgtctgtgtgattgatatcagagtgagtaacagatccaatactggttcagaagaagggtaaccacagggaattaacgatacgacgcctaatgagcaaacagattgatatttttgagataagatacaattgtactcattcctgaatttggattaaatgaaacacaaaagagtgttaatcagattttatgagaacatattaagtttttttcattgttcgtccagacgaaacaaaggcgtgagaaaacagcaacgatttgatgatgctttaagtcgtattatagatatgttgtaaatatttgaaatgctcagtcaattataaatcatttataacctgtcaagttgtaattatgcgatgacggcatatttttgattgaggcggttaat
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTACATAATAAAAACCCACACAACTCTGTACCACCCACAATCGGACGGAATATACCGGTGGCCGATATTTTTTCAGTATATATATCAACGACCATAATGGTAACTGGGACAAGCACCTTCCCTATGCAATATGATGACCTACAGATGTGCAGCTAGTCTACGAGACCACGGGTGCTACTCCAAATAAAATGACGCTGGGCCGTGAAATGTCTACACCCACTAGACATTGCGTACGAAATGCCACAGGAAATTAAACGTATTCCTCAAAATGCATGGGCATGGCATTTGCAGGAAAGATTGGAAGAAGCGCATGCTGCAGTTAAAGAAATTACAAAAGATAGCATCCAACGACAAAAGTGGAATCACGACAGAAAATTAAACTGGCAAACTTTCCATGCTGGTGATCTTGTGTGTTTACTTTCCAAATCGTAAGATTGGAATATCATCTAA
Unaligned ( gi|13 ): ATCTCGGTGAGCTCAATCGCTACTGATCAGAGACATTGAGGCTAAATGGCCTCAATACCGAAGTCGAACCCCAGCTTCCGTTGGACCACTCAACACCACGATGCCAAGTGATAAGCGCACGGAAATTGTCTTGCAAGGCGAGTCTGTATCACTACAATGAAATATGTTGCAAAACCAAAACTGAGTACACCTCTGGATAAAGATAAACGAAAATCTGTGAAATTCCAGTCAGATGATGCACAATACGACATGAGCAAATACCTACCTAAAGATGAGCAGTTCGAAAGCATGTCCACTTTGCATTGACTTCTAGATGACTTTAATGTAACAATGAGAAATAAAATGTGGATAAGAAAAAATGAACAAGAACGAGGTCGTGCTCACAATGATATACCATCTAGATTGCCGATGAAA
Unaligned ( gi|14 ): AATGTTGGGAAGAGAGGTCAGAACACCTTGACATTGCATTTAAAATTCCAGCAGCTTTGAAAAGAATGCCTATCCAACAATGGGTTTGGGAGCTCAAGGAAAAGCTGGAACTGGCGCAATCATTTGTGCGGGAAAATCATTAAATGCCATCGGTTCCATCCTACGACAAAAGAGTCTTTATGATACAAAATTAAATTGGCAAATCTTTAAAAAATGAGATGAATTATACATACACTTCCCACAATATGCCGAGAGGGAAGTCTCGTAGTAATTACGTTGACTCAATTTTGGCGGGGTCCTTTTGTAGTGGAAGAAAAGTGTTCTGAAGTGAATGGGCCTTACGGAAAATTTCAAATCATACATGTAGAGACCGCAT
Unaligned ( gi|16 ): CCTATAGGTCGGTAGAACATGAAACAACATGATGCAGTCTAAACTACTTAATGCTCGGAAGAGAAGTTGGAGCACCAATTGACCTCATGTACGAAATGCCAACCAGTATAAAGAGAATTCCAGAAAACCAATGGGCTTGGGAATTGAAGGAACGAATGGAGATTGCTCACAGAATAGCTAGACAGAATGCTAATGAGGCGATGCTACGACAGAAATCTTTGCATGATCATAAGCTTAACTGGCAAACATTTAAACCTGGTGATGAAGTATATGTA
Unaligned ( gi|17 ): CATCTTTTGGTTGGGGGGGTGGGGCACGGTATCTATTGAACAATGATCTGAGTGAGCTTCAAAGCTACTATAAGAGAAGATTAGGACAAATTAGTCAATTACGAAGTCGACATTCGTTAGAACCTCAAACTCGAATGCCAAAGTATCAGCACAGGTAATTTCTGGCAAGCGTATCTGTGATCACTACAATGAATCTGTTTTGGCAAGACCAAAACTCTGAGTAACCTTGAGGATAAAGGATTAAACGAAAAT
Unaligned ( gi|20 ): TTTGCCATTTCTTTTGCAGAATATGCCTACAAGAACAAATGTTGTGAGAAACAGCAATGATACGAGCTCAACATTCGTAATGAATATCTTGTAATATTTGAAATGCTCCTATTAAATTTCATTTTATAAATTTTCATTGTTGAGTTTATGCGAGCACG
Unaligned ( gi|22 ): CAGATTATGAAACATAAAGTTTGCCATTTCTTTTGCAGAAGATGCCTGAAAGAACAAATGCTTTGAGAAAAAGCAACAATACGAGCTTAATTTGCTATTATAGATATGTTGTAAATATTTGAAATGCT
Unaligned ( gi|26 ): ACGACAAAAATGATATCGCGACAGAAAAATATACTGGCAAACCTTTCATGATGTATACGTTTACTTTCCAAAATGTAAAATTGGCACATTACCT
Unaligned ( gi|27 ): ATCTTTGTTTGTAAGGGTTATGAATCCTGGGTAATTTGAGCGATAATGAGCAGCTTTACAGTGAACTTACGCGTGCTCTCA