lowQualScore : 2222222 66666666666666666666666666666666666 1 1111 11 2222222 222 111111 111 111 1111111 1111 111 11 222222222222 11111 222 11111 444444444444 11 1
lowQualScore : 9999999 77 66 99999999999999999999999999999999999 6 3 3 3 9 5 4 4 8 555 66 66 1111 1 44 1 99 1111111 6 333 000000 6 3 66 5 5 000 5 000 5 7777777 0 2222 1 999 0 11 5 8 777777777777 77777 5 333 5 4 777 3 66 4 6 55555 888 999999999999 1 5 77 5 77 5 0 777
lowQualScore : ....... .. .. ................................... . . . . . . . . . ... .. .. .... . .. . .. ....... . ... ...... . . .. . . ... . ... . ....... . .... . ... . .. . . ............ ..... . ... . . ... . .. . . ..... ... ............ . . .. . .. . . ...
lowQualScore : 8888888 99 33 55555555555555555555555555555555555 7 3 3 3 0 0 4 4 9 444 22 99 0000 7 33 7 33 7777777 7 777 888888 7 0 44 7 7 000 1 000 7 1111111 7 1111 7 333 4 33 7 7 666666666666 33333 0 999 0 5 888 4 11 4 2 55555 999 111111111111 7 7 11 7 99 7 0 555
consensus : AATACTTATCA--TG-ACAA--AAA-TACNT---AAAT-----------------A--------AATCTT-TA-GCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTA-TT-CCTAGC-AGAAACATACCA--TGTACG--CGCTACAAAATTTCATAANCAAATA-------TCAA-AGTACCG-TACTTAC--GTAAA-GCGTGGG-GCT-TT-TCC---GTCAA---CGAGCACGCCATTTCAG-AAT-T----TTCGCCGACAAA----TGAATAG--GGCACACNTAT-TTGAAA-TC-TA---TTTTGTGAGCATGTTTAT-TA-GATCGA-AC-AGT-TCACTAAGG---TGTCAT--GTGCAAAGAA-TACATAATTCATNG--CGTAAA-TCACATTT-AA----CCTCCAATT-T-GCAAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCAGNAGTTTTTTT
Reference ( gi|2 ) : AATACTTATCA--TGGACAA--AAA-TACTT---AAAT----------------CA--------AATCTT-TA-GCATTCGTATT-TGCA-TACATTGGTGGCCAGTTTCC-CTTA-TT-CCTAAC-AGAAACATGTCA--TGTACA--CACTACAAAATTCCATACGCAAATA-------TCAA-AGTACCT-TACTTAC--GTAAA-GAGTGGG-GCT-TT-TCC---GTTAA---TGAGCACGCCATTTCAG-AAT-T----TTCGCCGACAAA----TAAATAG--CGCACACTCAT-TTGAAA-TC-TA---TGCTGTGAGCATGTTTAC-TA-GATCGA-AC-TGT-TCACTAAGG---TGTTAT--GTGCAAAGAA-TACACAATTCATTG--CGTAAA-TCACATTT-------CCTTCAATT-T-CCAAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTTTA
gi|9 : AATACTTAT-------ACATTTAGC-TACAT---ACAT----------------GA--------AAT-TT-TA-GCATTCGTATT-TGCA-TACATGGGTGG-GAGTTTCC-CTTATTT-CCCAA
gi|16 : ttagttttcatacattggcacaaaAATACTTATCA-----ATTA--AAC---CTT---TAAT----------------TA--------TATATC-TAAGCATTCGTATT-TGCA-TACATGGATGGGCAggactaaaaattcaatttacaaccagatatta
gi|3 : TTATCAATTTTACAA--ACA-TAC-------AT-----------------A--------AACCTT-TA-GCATTCATATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTA-TT-CCTAGC-AGAAACATACCA--TGTATG--TGCTACAAAATTTCAAAACCAAATACATGTATTAAA-AGTACCG-TACTTAT--GTAAA-GCATGGG-GCT-TT-TCG---GTCAA---TGAACATGTCATTTCAG-AAT-T----TTCGCCAACAAG----TGAACAG--GGCACACTTAT-CTGAAA-TC-TA---TTTTGTGAGCATGTTTAT-TA-GATCGAGA---GT-TCACTAAAG---TGTTAT--GTGTAAAGAA-TACGTAATTCAT-----------TCATAGGT-------CCTCCAGTT-T-GCAACAG--GGATGTCAAGAAATTTAACCTTG
gi|5 : --TGAACAA--AAACTACTTATCAAATTTTAC-----------CAACATACAGAATCTTATA--CATTCATATT-TGCA-TACA-TGGTGGGCAGTTTCC-CTTA-TTACCTAGC-AGAAACATACCA--TGTATG--CGCTATAAAATTTCATAAGCAAATA-------TCAA-AGTA----GAC---C--ATCAATGAGCACG-CCA-TT-TCA---G--AA---T----------TTTCA---------------CCGACAAA----TGAATAG--GGCACACT--T-T-----------------TGTGAGCATGTTTAT-AA-GATTGA-AC-AGT-TCACTAAGG---TGTTAT--GTGTAAAGAA-TACATAATTCATAA--CGTAAA-TCA----T-------C--TCTATTAT-ACTAC-C--GGATGTC-AGAAA
gi|7 : t--TGTACAA--AAA-TACTC---AAGTATTTTATTAATTCACATA--------AATCTT-TA-GCGTTCGTTTT-TGCA-TACATTGATGGGCAGTTTCC-CTTA-TT-CTTAGC-AGAAACACACCA--TTTACATGCGCTACAAAATGTTATTAGCAAATA-------ACGA-AGTACCA-TACTTAT--GTAAA-ACATGGG-GCT-TTCTCC---CTCAA---CAAGCACGCCATTTCAG-AAT-T----TTCGTCGACAAA----TAAatg
gi|13 : aatgtttttcaacacgc--TGGACAA--AAA---------------------------------------AACCTT-TA-GCATTCGTATT-TGCA-AACATGGATGGGCAGTTGCC-CTTA-TT-TCTAGC-AGAAACATACCA--g
gi|4 : ttagttttccaatacgtAA--CAA-TATAT---ATAT-----------------A--------AATCTT-TG-GCGTTCGTATT-TGCA-AGTATGGGTGGGAAGTTTTC-TTTA-TT-CCAAAA-ATAAAAATATAA--TTTGTG--CAC---AAAA---CA-----AAATA-------TCAA-AGTACC-------GC--ATAGG-GAGGGCGTGCT-TT-TCC---GTCAA---CGAGCATGCCATTTCGG-AA-----------------------TGAATA------------AT-T---AA-TC-TA---T------------TTTA------ATC-A-AC-AGT-TCGTTAAGG---TGTAAC--GTGCATAGAA-TACACAATTCAAAG--CGTACG-TTACTTTTGAACCTACCTCCAATT-T-GCAAC-C--GGATGTC-AAAAATTTATCCTTATATATTG-AACCCGATTAAGAGTTTTTTT
gi|1 : aacaatggacaaaactaatcaacattatt-TACTT---AAAT-----------------A--------AATCTTCTA-GCATTCGTATCATGCAATACATTGGGGGC-AGTTCCCTCCTA-TTACCTAACCAGGAACATGTCGATTGTACA--CA-TACAAAATTCCATAACAAAACA-------TCAACAGTACCTATACTTACTGATAAA-GAGTGGG--CTGTT-TCCCCAGTTAACAGTGAGCACGCCATTTCAGCAATCT----TTCGCCGACAAAATTACAACTAAGACGCACACACATATTGAAACTCATA---TGCTGTGAGCATGTTTACATACGAATGA-ACCTGC-TCA-TAAGGATGCGTTATAGGTGCAAAGAAGTACACAATTCATTGAACGTAAAATCAC--TT-------TCTTCAATT-TGCCGAC-CCGGGATGTC-AAGAATTTAACCTCGTATACCGAAACCCGATCAGTAATTTT
gi|10 : -TACAT---ACAT-----------------G--------AATCTT-TA-GCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTA-TT-CCTTG--AAAAACACACCA--TGTATG--CGCTACAAAATATCATAAGCAA
gi|15 : tacttatcaattt----------------CG--------AACCTT-TA-GTATTCGTATT-TGCG-TACATGGGAGGGCACTTTCtgaaagaaaaagtgagcaag
gi|6 : acttataattttaccaatataca--------AACCTT-TA-GCATTCATATT-TACA-TACATGGGTGGACAATTTCC-CTTA-TT-CCTAGC-AGAAACATACCA--TGTATG--CGCTACGAAATTCCATAACCAAATA-------TCAA-AGAACCG-CACTTCT--GTAAT-GCATAGA-GCT-TT-TCC---GTCAA---TGCGCACGCCATTTCAG-AAT-T----TTCGCTGACAAA----TGAATAG--GGTATACTCAT-TTGAAA-CC-TA---TTTTGTGAGCATGTTTAT-TA-GATCGA-AC-AGT-TCACTAAGG---TGTCAT--ATGCAAAGAA-TTCATAATTCATAG--C
gi|18 : aaatacttatataaattttaccaacatatatg--------AATCTT-TA-GCATTCCTATT-TGCA-TACACGGGTGG
gi|8 : attttaccaacatgcatgGGG-GCT-TT-TCC---GTCAA---TGAGCACGCCGTTTCAG-AAT-TCCCCCCCCCCCACAAA----TGAATAG--GACATACCTAT-TAGAAA-CA-TAGTTTG-TGTAAGCATGTTTAT-TA-TATCGA-AA-AGT-TCAGTAAGG---TGACAT--GTACAAAGAA-Tg
gi|12 : cacAATAG--GGCCTACGTAT-TTGAAA-TT-CA---TTTTGTGACTTTATTTAA-TC-GACGGA-A---GTATCAATAAGG---TGTAAT--GCGCAAAGAA-TACATAATGCAATG--CAAAAA-TTAAATTT-------
gi|11 : ttGA-AC-AGT-TCACTAAGG---TGTCAT--ATGCAAACAA-TACATAATTAATTG--CGTAAA-TCACATTTAAA----CTTTC---C-T-GCAAC-C--GGAAATC-AGAAATTTAACCTCGTATACCG-AACCCGA
gi|14 : AAG---TGTCAT--GTGCAAAGAT-TACA-GATCC--------TA------------------CCTCCAATT-T-GCAAT-C--GAATGTC-AGAAATTTAACCTCGTATAC
gi|17 : agacttcaaatAAG-TTACATTTGAACCTACCTCCAATT-T-GCAAC-C--TTAAGTA-AAAACTTTAACCTTGTATACCA-AA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): CAAAAATTGACACCGTCTATTCCGAGCCCCTGTGATTCTTTGTCGCACCAAC
Alignments
lowQualScore : 8888888888888888888888888888888888888888888 1111111 111 1111 1111 11 1111 5555555555555555555
lowQualScore : 0000000000000000000000000000000000000000000 3 6 3 3 4 8 4 66 66 0 0 0 2 8888888 5 1 77 0 111 11 1 5 5 888 888 5 5 0000 0000 66 00 5 3 6666 66 0 5 5 88888 4 2 777 1 55 4 1111 4 1111111111111111111 66 5 5 66 5 8 11 0
lowQualScore : ........................................... . . . . . . . .. .. . . . . ....... . . .. . ... .. . . . ... ... . . .... .... .. .. . . .... .. . . . ..... . . ... . .. . .... . ................... .. . . .. . . .. .
lowQualScore : 3333333333333333333333333333333333333333333 1 2 1 1 0 0 4 11 99 2 2 4 8 6666666 7 7 44 7 999 11 4 0 0 888 888 0 0 6666 6666 99 22 0 4 0000 99 1 0 0 88888 4 9 000 4 55 0 6666 4 9999999999999999999 99 0 0 99 0 0 77 7
consensus : AATACTTATCAA---TT--ACAA--AAA---T-------ACAT-----AN--AT-GAATCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAC--GCGCTACAAAATTCCATAAGCAAATA-------TCAA-AGTACC-GTACTTAC--GTAAAGCGTGGGGCT-TT-TCC---GTCAAC---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAAA----TGAATAGG--GCACACNCAT-TTGAAA-TC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAAC---A-GT-TCACTAAGG---TGTCAT--GTGCAAAGAA-TACATAATTCATTG--CGTAAA-TCACATTT------A-----CC--TCCAATTTGC-AAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTT
Reference ( family-2025 ) : AATACTTATCA----TG--ACAA--AAA---T-------ACNT-----AA--AT-AAATCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAC--GCGCTACAAAATTTCATAANCAAATA-------TCAA-AGTACC-GTACTTAC--GTAAAGCGTGGGGCT-TT-TCC---GTCAAC---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAAA----TGAATAGG--GCACACNTAT-TTGAAA-TC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAAC---A-GT-TCACTAAGG---TGTCAT--GTGCAAAGAA-TACATAATTCATNG--CGTAAA-TCACATTTA-----A-----CC--TCCAATTTGC-AAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCAGNAGTTTTTTT
gi|1 : ---T-------ACTT-----AA--AT-AAATCTTCTAGCATTCGTATCATGCAATACATTGG-GGGCAGTTCCCTCCTATTACCTAACCAGGAACATGTCGATTGTAC--ACA-TACAAAATTCCATAACAAAACA-------TCAACAGTACCTATACTTACTGATAAAGAGTGGG-CTGTT-TCCCCAGTTAACAGTGAGCACGCCATTTCAGCAATCTTTCGCCG----ACAAAATTACAACTAAGACGCACACACATATTGAAACTCATATGCTGTG--AGCATGTTTACATACGAATGAAC---CTGC-TCA-TAAGGATGCGTTATAGGTGCAAAGAAGTACACAATTCATTGAACGTAAAATCAC-TTT-------------C--TTCAATTTGCCGAC-CCGGGATGTC-AAGAATTTAACCTCGTATACCGAAACCCGATCAGTAATTTT
gi|10 : TACTTATC----------------AATTTT-------ACAT-----AC--AT-GAATCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTTG--AAAAACACACCA--TGTAT--GCGCTACAAAATATCATAAGCAA
gi|11 : GAAC---A-GT-TCACTAAGG---TGTCAT--ATGCAAACAA-TACATAATTAATTG--CGTAAA-TCACATTTA-----A-----ACTTTCC----TGC-AAC-C--GGAAATC-AGAAATTTAACCTCGTATACCG-AACCCGAtgaaagaaaaagtgagcaag
gi|12 : AATAGG--GCCTACGTAT-TTGAAA-TT-CATTTTGTG--A-C---TTTAT-TT-AATCGA-CGGAA-GTATCAATAAGG---TGTAAT--GCGCAAAGAA-TACATAATGCAATG--CAAAAA-TTAAATTT
gi|13 : ttAA---T-------ACGTTGGACAA--AA-AAACCTT-TAGCATTCGTATT-TGCA-AACATGGATGGGCAGTTGCC-CTTATT-TCTAGC-AGAAACATACCA--
gi|14 : ttagttttccAAG---TGTCAT--GTGCAAAGAT-TACAGA--TCCT-------------------------A-----CC--TCCAATTTGC-AAT-C--GAATGTC-AGAAATTTAACCTCGTATAC
gi|15 : agacttcaaatACTTATAA----TTTTACCA--ATA---T-------AC-----------AC-GAACCTT-TAGTATTCGTATT-TGCG-TACATGGGAGGGCACTTTC
gi|16 : AATACTTATCAAT--T---------AAA---C-------CTTT-----AATTAT-ATATCTA--AGCATTCGTATT-TGCA-TACATGGATGGGCA
gi|17 : AAG-TTACATTTG-----AACCTACC--TCCAATTTGC-AAC-C--TTAAGTA-AAAACTTTAACCTTGTATACCA-AA
gi|18 : -------ACAT-----GC--AT-GAATCTT-TAGCATTCCTATT-TGCA-TACACGGGTGGG
gi|2 : attttaccaAATACTTATCA----TGG-ACAA--AAA---T-------ACTT-----AA--ATCAAATCTT-TAGCATTCGTATT-TGCA-TACATTGGTGGCCAGTTTCC-CTTATT-CCTAAC-AGAAACATGTCA--TGTAC--ACACTACAAAATTCCATACGCAAATA-------TCAA-AGTACC-TTACTTAC--GTAAAGAGTGGGGCT-TT-TCC---GTTAAT---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAAA----TAAATAGC--GCACACTCAT-TTGAAA-TC-TATGCTGTG--AGCATGTTTAC-TA-GATCGAAC---T-GT-TCACTAAGG---TGTTAT--GTGCAAAGAA-TACACAATTCATTG--CGTAAA-TCACATTT------------CC--TTCAATTTCC-AAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTT
gi|3 : TTATCAATT-TT--ACAA--ACA---T-------AC-----------AT-AAACCTT-TAGCATTCATATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAT--GTGCTACAAAATTTCAAAACCAAATACATGTATTAAA-AGTACC-GTACTTAT--GTAAAGCATGGGGCT-TT-TCG---GTCAAT---GAACATGTCATTTCAG-AAT-TTTCGCCA----ACAAG----TGAACAGG--GCACACTTAT-CTGAAA-TC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAG----A-GT-TCACTAAAG---TGTTAT--GTGTAAAGAA-TACGTAATTCATT---CATAGG-T-------------------CC--TCCAGTTTGC-AACAG--GGATGTCAAGAAATTTAACCTTGta
gi|4 : AA--CAA---T-------ATAT-----AT--AT-AAATCTT-TGGCGTTCGTATT-TGCA-AGTATGGGTGGGAAGTTTTC-TTTATT-CCAAAA-ATAAAAATATAA--TTTGT--GC---ACAAAA---CA-----AAATA-------TCAA-AGTACC-GCA--TAG--GGAGGGCGT---GCT-TT-TCC---GTCAAC---GAGCATGCCATTTCGG--------------------AA----TGAATA------------AT-T---AA-TC-TATTTT--------------------AATC-AAC---A-GT-TCGTTAAGG---TGTAAC--GTGCATAGAA-TACACAATTCAAAG--CGTACG-TTACTTTTGAACCTA-----CC--TCCAATTTGC-AAC-C--GGATGTC-AAAAATTTATCCTTATATATTG-AACCCGATTAAGAGTTTTTTT
gi|5 : aacaatggacaaaactaatcaacattattTACTTATCAAATTTT--ACCA--ACA---T-------ACA-------------GAATCTTATA-CATTCATATT-TGCA-TACATGG-TGGGCAGTTTCC-CTTATTACCTAGC-AGAAACATACCA--TGTAT--GCGCTATAAAATTTCATAAGCAAATA-------TCAA-AG----------------TAGA---------------CC---ATCAAT---GAGCACGCCATTTCAG-AAT-TTTCACCG----ACAAA----TGAATAGG--GCACAC-----------------TTTTGTG--AGCATGTTTAT-AA-GATTGAAC---A-GT-TCACTAAGG---TGTTAT--GTGTAAAGAA-TACATAATTCATAA--CGTAAA-TC------------A-----TC--TCTATTATAC-TAC-C--GGATGTC-AGAAA
gi|6 : ttgaacaaaaacAATACTTAT-A----T---------AAA---TTTTACCAACAT-----AT--AT-GAACCTT-TAGCATTCATATT-TACA-TACATGGGTGGACAATTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAT--GCGCTACGAAATTCCATAACCAAATA-------TCAA-AGAACC-GCACTTCT--GTAATGCATAGAGCT-TT-TCC---GTCAAT---GCGCACGCCATTTCAG-AAT-TTTCGCTG----ACAAA----TGAATAGG--GTATACTCAT-TTGAAA-CC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAAC---A-GT-TCACTAAGG---TGTCAT--ATGCAAAGAA-TTCATAATTCATAG--Catg
gi|7 : a--AT-AAATCTT-TAGCGTTCGTTTT-TGCA-TACATTGATGGGCAGTTTCC-CTTATT-CTTAGC-AGAAACACACCA--TTTACATGCGCTACAAAATGTTATTAGCAAATA-------ACGA-AGTACC-ATACTTAT--GTAAAACATGGGGCT-TTCTCC---CTCAAC---AAGCACGCCATTTCAG-AAT-TTTCGTCG----ACAAA----TAA
gi|8 : aatgtttttcaacacgctgtacaaaaatactcaagtattttattaattcacGGGGCT-TT-TCC---GTCAAT---GAGCACGCCGTTTCAG-AAT-TCCCCCCCCCCCACAAA----TGAATAGG--ACATACCTAT-TAGAAA-CA-TAGTTTGTGTAAGCATGTTTAT-TA-TATCGAAA---A-GT-TCAGTAAGG---TGACAT--GTACAAAGAA-Tg
gi|9 : cacAATACTTAT----------ACATTTAGC---T-------ACAT-----AC--AT-GAAATTT-TAGCATTCGTATT-TGCA-TACATGGGTGGG-AGTTTCC-CTTATT-TC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAAAAATTGACACCGTCTATTCCGAGCCCCTGTGATTCTTTGTCGCACCAAC
Alignments
lowQualScore : 55555555555555555555 1111111 111 1111 1111 44444444444444444444
lowQualScore : 8 11111111111111111111 0 5 44 6 3 3 4 8 4 66 66 0 11 0 2 8888888 5 1 77 0 111 11 7 5 5 888 888 5 5 0000 0000 66 99 5 3 6666 66 0 5 5 88888 4 2 777 1 55 4 1 8888 4 55555555555555555555 5 5 66 5 8 0
lowQualScore : . .................... . . .. . . . . . . .. .. . .. . . ....... . . .. . ... .. . . . ... ... . . .... .... .. .. . . .... .. . . . ..... . . ... . .. . . .... . .................... . . .. . . .
lowQualScore : 9 44444444444444444444 1 4 99 2 1 1 0 0 4 11 99 2 44 4 5 6666666 7 7 44 7 999 11 6 0 0 888 888 0 0 6666 6666 99 99 0 4 0000 99 1 0 0 88888 4 9 000 4 55 0 4 6666 4 11111111111111111111 0 0 99 0 0 7
consensus : AATACTTAT-CAA---TT--A-C-AAA-----AATACATACAT-GAATCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAC--GCGCTACAAAATTCCATAAGCAAATA-------TCAA-AGTACC-GTACTTAC--GTAAAGCGTGGGGCT-TT-TCC---GTCAAC---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAA----ATGAATAGG--GCACACNCAT-TTGAAA-TC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAAC---A-GT-TCACTAAG---GTGTCAT--GTGCAAAGAA-TACATAATTCATTG--CGT-AAATCACATT------T------ACCTCCAATTTG-CAAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTT
Reference ( family-2025 ) : AATACTTAT-CAA---TT--A-C-AAA-----AATACATANAT-GAATCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAC--GCGCTACAAAATTCCATAAGCAAATA-------TCAA-AGTACC-GTACTTAC--GTAAAGCGTGGGGCT-TT-TCC---GTCAAC---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAA----ATGAATAGG--GCACACNCAT-TTGAAA-TC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAAC---A-GT-TCACTAAG---GTGTCAT--GTGCAAAGAA-TACATAATTCATTG--CGT-AAATCACATT------T------ACCTCCAATTTG-CAAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTT
gi|1 : TACTTAAAT-AAATCTTCTAGCATTCGTATCATGCAATACATTGG-GGGCAGTTCCCTCCTATTACCTAACCAGGAACATGTCGATTGTAC--ACA-TACAAAATTCCATAACAAAACA-------TCAACAGTACCTATACTTACTGATAAAGAGT-GGGCTGTT-TCCCCAGTTAACAGTGAGCACGCCATTTCAGCAATCTTTCGCCG----ACAAAATTACAACTAAGACGCACACACATATTGAAACTCATATGCTGTG--AGCATGTTTACATACGAATGAAC---CTGC-TCA-TAAGGATGCGTTATAGGTGCAAAGAAGTACACAATTCATTGAACGTAAAATCAC-TT------T--------CTTCAATTTGCCGAC-CCGGGATGTC-AAGAATTTAACCTCGTATACCGAAACCCGATCAGTAATTTT
gi|10 : TACTTAT-CAA---TT--T-------------TACATACAT-GAATCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTTG--AAAAACACACCA--TGTAT--GCGCTACAAAATATCATAAGCAA
gi|11 : GAAC---A-GT-TCACTAAG---GTGTCAT--ATGCAAACAA-TACATAATTAATTG--CGT-AAATCACATT------TAA----ACTTTC---CTG-CAAC-C--GGAAATC-AGAAATTTAACCTCGTATACCG-AACCCGAtgaaagaaaaagtgagcaag
gi|12 : AATAGG--GCCTACGTAT-TTGAAA-TT-CATTTTGTG--A-C---TTTAT-TT-AATCGA-CGGAA-GTATCAATAAG---GTGTAAT--GCGCAAAGAA-TACATAATGCAATG--CAA-AAATTAAATT------T------
gi|13 : ttAACCTT-TAGCATTCGTATT-TGCA-AACATGGATGGGCAGTTGCC-CTTATT-TCTAGC-AGAAACATACCA--
gi|14 : ttagttttccaatacgttggacaaaaaAA---GTGTCAT--GTGCAAAGAT-TACA-----------------GATC----C------T------ACCTCCAATTTG-CAAT-C--GAATGTC-AGAAATTTAACCTCGTATAC
gi|15 : agacttcaaatACTTAT--AA---TT--T-T-ACC-----AATA--TACAC-GAACCTT-TAGTATTCGTATT-TGCG-TACATGGGAGGGCACTTTC
gi|16 : AATACTTAT-CAA---TT--A----AACCTTTAAT---TATAT---ATCTA--AGCATTCGTATT-TGCA-TACATGGATGGGCA
gi|17 : -AAGTTACATT------TGAACCTACCTCCAATTTG-CAAC-C--TTAAGTA-AAAACTTTAACCTTGTATACCA-AA
gi|18 : ACATGCAT-GAATCTT-TAGCATTCCTATT-TGCA-TACACGGGTGGG
gi|2 : attttaccaAATACTTAT-CAT---GG--A-C-AAA-----AATACTTAAATCAAATCTT-TAGCATTCGTATT-TGCA-TACATTGGTGGCCAGTTTCC-CTTATT-CCTAAC-AGAAACATGTCA--TGTAC--ACACTACAAAATTCCATACGCAAATA-------TCAA-AGTACC-TTACTTAC--GTAAAGAGTGGGGCT-TT-TCC---GTTAAT---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAA----ATAAATAGC--GCACACTCAT-TTGAAA-TC-TATGCTGTG--AGCATGTTTAC-TA-GATCGAAC---T-GT-TCACTAAG---GTGTTAT--GTGCAAAGAA-TACACAATTCATTG--CGT-AAATCACATT------T-------CCTTCAATTTC-CAAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTT
gi|3 : TTAT-CAA---TTTTA-C-AAA-----CATACATA-----AACCTT-TAGCATTCATATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAT--GTGCTACAAAATTTCAAAACCAAATACATGTATTAAA-AGTACC-GTACTTAT--GTAAAGCATGGGGCT-TT-TCG---GTCAAT---GAACATGTCATTTCAG-AAT-TTTCGCCA----ACAA----GTGAACAGG--GCACACTTAT-CTGAAA-TC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAG----A-GT-TCACTAAA---GTGTTAT--GTGTAAAGAA-TACGTAATTCATT---CAT-AGGT--------------------CCTCCAGTTTG-CAACAG--GGATGTCAAGAAATTTAACCTTGta
gi|4 : AAAACTAAT-CAACA-TT--A-TTAAC-----AATATATATAT-AAATCTT-TGGCGTTCGTATT-TGCA-AGTATGGGTGGGAAGTTTTC-TTTATT-CCAAAA-ATAAAAATATAA--TTTGT--GC---ACAAAA---CA-----AAATA-------TCAA-AGTACC-GCA--TAG--GGAGGGCGT---GCT-TT-TCC---GTCAAC---GAGCATGCCATTTCGG--------------------A----ATGAATA------------AT-T---AA-TC-TATTTT--------------------AATC-AAC---A-GT-TCGTTAAG---GTGTAAC--GTGCATAGAA-TACACAATTCAAAG--CGT-ACGTTACTTTTGAACCT------ACCTCCAATTTG-CAAC-C--GGATGTC-AAAAATTTATCCTTATATATTG-AACCCGATTAAGAGTTTTTTT
gi|5 : aacaatggacTACTTAT-CAAATTTT--A-C-CAA-----CATACA------GAATCTTATA-CATTCATATT-TGCA-TACATGG-TGGGCAGTTTCC-CTTATTACCTAGC-AGAAACATACCA--TGTAT--GCGCTATAAAATTTCATAAGCAAATA-------TCAA-AG----------------TAGA---------------CC---ATCAAT---GAGCACGCCATTTCAG-AAT-TTTCACCG----ACAA----ATGAATAGG--GCACAC-----------------TTTTGTG--AGCATGTTTAT-AA-GATTGAAC---A-GT-TCACTAAG---GTGTTAT--GTGTAAAGAA-TACATAATTCATAA--CGT-AAATC------------------ATCTCTATTATA-CTAC-C--GGATGTC-AGAAA
gi|6 : ttgaacaaaaacAATACTTATATAAATTTT--A-C-CAA---------CATATAT-GAACCTT-TAGCATTCATATT-TACA-TACATGGGTGGACAATTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAT--GCGCTACGAAATTCCATAACCAAATA-------TCAA-AGAACC-GCACTTCT--GTAATGCATAGAGCT-TT-TCC---GTCAAT---GCGCACGCCATTTCAG-AAT-TTTCGCTG----ACAA----ATGAATAGG--GTATACTCAT-TTGAAA-CC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAAC---A-GT-TCACTAAG---GTGTCAT--ATGCAAAGAA-TTCATAATTCATAG--Catg
gi|7 : aACAT-AAATCTT-TAGCGTTCGTTTT-TGCA-TACATTGATGGGCAGTTTCC-CTTATT-CTTAGC-AGAAACACACCA--TTTACATGCGCTACAAAATGTTATTAGCAAATA-------ACGA-AGTACC-ATACTTAT--GTAAAACATGGGGCT-TTCTCC---CTCAAC---AAGCACGCCATTTCAG-AAT-TTTCGTCG----ACAA----ATAA
gi|8 : aatgtttttcaacacgctgtacaaaaatactcaagtattttattaattcGGGGCT-TT-TCC---GTCAAT---GAGCACGCCGTTTCAG-AAT-TCCCCCCCCCCCACAA----ATGAATAGG--ACATACCTAT-TAGAAA-CA-TAGTTTGTGTAAGCATGTTTAT-TA-TATCGAAA---A-GT-TCAGTAAG---GTGACAT--GTACAAAGAA-Tg
gi|9 : cacAATACTTATACAT---TT--AGC-----------TACATACAT-GAAATTT-TAGCATTCGTATT-TGCA-TACATGGGTGGG-AGTTTCC-CTTATT-TC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAAAAATTGACACCGTCTATTCCGAGCCCCTGTGATTCTTTGTCGCACCAAC
Alignments
lowQualScore : 66666666666666666666666 1111111 111 1111 1111 44444444444444444444
lowQualScore : 8 11111111111111111111111 0 44 6 3 3 4 8 4 66 66 0 11 0 2 8888888 5 1 77 0 111 11 7 5 5 888 888 5 5 0000 0000 66 99 5 3 6666 66 0 5 5 88888 4 2 777 1 55 4 1 8888 4 55555555555555555555 5 5 66 5 8 0
lowQualScore : . ....................... . .. . . . . . . .. .. . .. . . ....... . . .. . ... .. . . . ... ... . . .... .... .. .. . . .... .. . . . ..... . . ... . .. . . .... . .................... . . .. . . .
lowQualScore : 9 55555555555555555555555 1 22 2 1 1 0 0 4 11 99 2 44 4 5 6666666 7 7 44 7 999 11 6 0 0 888 888 0 0 6666 6666 99 99 0 4 0000 99 1 0 0 88888 4 9 000 4 55 0 4 6666 4 11111111111111111111 0 0 99 0 0 7
consensus : AATACTTAT-CAA---TT--A-C-AAA-----AATACATACAT-GAATCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAC--GCGCTACAAAATTCCATAAGCAAATA-------TCAA-AGTACC-GTACTTAC--GTAAAGCGTGGGGCT-TT-TCC---GTCAAC---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAA----ATGAATAGG--GCACACNCAT-TTGAAA-TC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAAC---A-GT-TCACTAAG---GTGTCAT--GTGCAAAGAA-TACATAATTCATTG--CGT-AAATCACATT------T------ACCTCCAATTTG-CAAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTT
Reference ( family-2025 ) : AATACTTAT-CAA---TT--A-C-AAA-----AATACATACAT-GAATCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAC--GCGCTACAAAATTCCATAAGCAAATA-------TCAA-AGTACC-GTACTTAC--GTAAAGCGTGGGGCT-TT-TCC---GTCAAC---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAA----ATGAATAGG--GCACACNCAT-TTGAAA-TC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAAC---A-GT-TCACTAAG---GTGTCAT--GTGCAAAGAA-TACATAATTCATTG--CGT-AAATCACATT------T------ACCTCCAATTTG-CAAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTT
gi|1 : TACTTAAAT-AAATCTTCTAGCATTCGTATCATGCAATACATTGG-GGGCAGTTCCCTCCTATTACCTAACCAGGAACATGTCGATTGTAC--ACA-TACAAAATTCCATAACAAAACA-------TCAACAGTACCTATACTTACTGATAAAGAGT-GGGCTGTT-TCCCCAGTTAACAGTGAGCACGCCATTTCAGCAATCTTTCGCCG----ACAAAATTACAACTAAGACGCACACACATATTGAAACTCATATGCTGTG--AGCATGTTTACATACGAATGAAC---CTGC-TCA-TAAGGATGCGTTATAGGTGCAAAGAAGTACACAATTCATTGAACGTAAAATCAC-TT------T--------CTTCAATTTGCCGAC-CCGGGATGTC-AAGAATTTAACCTCGTATACCGAAACCCGATCAGTAATTTT
gi|10 : TACTTAT-CAA---TT--T-------------TACATACAT-GAATCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTTG--AAAAACACACCA--TGTAT--GCGCTACAAAATATCATAAGCAA
gi|11 : GAAC---A-GT-TCACTAAG---GTGTCAT--ATGCAAACAA-TACATAATTAATTG--CGT-AAATCACATT------TAA----ACTTTC---CTG-CAAC-C--GGAAATC-AGAAATTTAACCTCGTATACCG-AACCCGAtgaaagaaaaagtgagcaag
gi|12 : AATAGG--GCCTACGTAT-TTGAAA-TT-CATTTTGTG--A-C---TTTAT-TT-AATCGA-CGGAA-GTATCAATAAG---GTGTAAT--GCGCAAAGAA-TACATAATGCAATG--CAA-AAATTAAATT------T------
gi|13 : ttAACCTT-TAGCATTCGTATT-TGCA-AACATGGATGGGCAGTTGCC-CTTATT-TCTAGC-AGAAACATACCA--
gi|14 : ttagttttccaatacgttggacaaaaaAA---GTGTCAT--GTGCAAAGAT-TACA-----------------GATC----C------T------ACCTCCAATTTG-CAAT-C--GAATGTC-AGAAATTTAACCTCGTATAC
gi|15 : agacttcaaatACTTAT--AA---TT--T-T-ACC-----AATA--TACAC-GAACCTT-TAGTATTCGTATT-TGCG-TACATGGGAGGGCACTTTC
gi|16 : AATACTTAT-CAA---TT--A----AACCTTTAAT---TATAT---ATCTA--AGCATTCGTATT-TGCA-TACATGGATGGGCA
gi|17 : -AAGTTACATT------TGAACCTACCTCCAATTTG-CAAC-C--TTAAGTA-AAAACTTTAACCTTGTATACCA-AA
gi|18 : ACATGCAT-GAATCTT-TAGCATTCCTATT-TGCA-TACACGGGTGGG
gi|2 : attttaccaAATACTTAT-CAT---GG--A-C-AAA-----AATACTTAAATCAAATCTT-TAGCATTCGTATT-TGCA-TACATTGGTGGCCAGTTTCC-CTTATT-CCTAAC-AGAAACATGTCA--TGTAC--ACACTACAAAATTCCATACGCAAATA-------TCAA-AGTACC-TTACTTAC--GTAAAGAGTGGGGCT-TT-TCC---GTTAAT---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAA----ATAAATAGC--GCACACTCAT-TTGAAA-TC-TATGCTGTG--AGCATGTTTAC-TA-GATCGAAC---T-GT-TCACTAAG---GTGTTAT--GTGCAAAGAA-TACACAATTCATTG--CGT-AAATCACATT------T-------CCTTCAATTTC-CAAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTT
gi|3 : TTAT-CAA---TTTTA-C-AAA---------CATACAT-AAACCTT-TAGCATTCATATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAT--GTGCTACAAAATTTCAAAACCAAATACATGTATTAAA-AGTACC-GTACTTAT--GTAAAGCATGGGGCT-TT-TCG---GTCAAT---GAACATGTCATTTCAG-AAT-TTTCGCCA----ACAA----GTGAACAGG--GCACACTTAT-CTGAAA-TC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAG----A-GT-TCACTAAA---GTGTTAT--GTGTAAAGAA-TACGTAATTCATT---CAT-AGGT--------------------CCTCCAGTTTG-CAACAG--GGATGTCAAGAAATTTAACCTTGta
gi|4 : AAAACTAAT-CAACA-TT--A-TTAAC-----AATATATATAT-AAATCTT-TGGCGTTCGTATT-TGCA-AGTATGGGTGGGAAGTTTTC-TTTATT-CCAAAA-ATAAAAATATAA--TTTGT--GC---ACAAAA---CA-----AAATA-------TCAA-AGTACC-GCA--TAG--GGAGGGCGT---GCT-TT-TCC---GTCAAC---GAGCATGCCATTTCGG--------------------A----ATGAATA------------AT-T---AA-TC-TATTTT--------------------AATC-AAC---A-GT-TCGTTAAG---GTGTAAC--GTGCATAGAA-TACACAATTCAAAG--CGT-ACGTTACTTTTGAACCT------ACCTCCAATTTG-CAAC-C--GGATGTC-AAAAATTTATCCTTATATATTG-AACCCGATTAAGAGTTTTTTT
gi|5 : aacaatggacTACTTAT-CAAATTTT--A-C-CAA---------CATACA--GAATCTTATA-CATTCATATT-TGCA-TACATGG-TGGGCAGTTTCC-CTTATTACCTAGC-AGAAACATACCA--TGTAT--GCGCTATAAAATTTCATAAGCAAATA-------TCAA-AG----------------TAGA---------------CC---ATCAAT---GAGCACGCCATTTCAG-AAT-TTTCACCG----ACAA----ATGAATAGG--GCACAC-----------------TTTTGTG--AGCATGTTTAT-AA-GATTGAAC---A-GT-TCACTAAG---GTGTTAT--GTGTAAAGAA-TACATAATTCATAA--CGT-AAATC------------------ATCTCTATTATA-CTAC-C--GGATGTC-AGAAA
gi|6 : ttgaacaaaaacAATACTTATATAAATTTT--A-C-CAA---------CATATAT-GAACCTT-TAGCATTCATATT-TACA-TACATGGGTGGACAATTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAT--GCGCTACGAAATTCCATAACCAAATA-------TCAA-AGAACC-GCACTTCT--GTAATGCATAGAGCT-TT-TCC---GTCAAT---GCGCACGCCATTTCAG-AAT-TTTCGCTG----ACAA----ATGAATAGG--GTATACTCAT-TTGAAA-CC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAAC---A-GT-TCACTAAG---GTGTCAT--ATGCAAAGAA-TTCATAATTCATAG--Catg
gi|7 : aACAT-AAATCTT-TAGCGTTCGTTTT-TGCA-TACATTGATGGGCAGTTTCC-CTTATT-CTTAGC-AGAAACACACCA--TTTACATGCGCTACAAAATGTTATTAGCAAATA-------ACGA-AGTACC-ATACTTAT--GTAAAACATGGGGCT-TTCTCC---CTCAAC---AAGCACGCCATTTCAG-AAT-TTTCGTCG----ACAA----ATAA
gi|8 : aatgtttttcaacacgctgtacaaaaatactcaagtattttattaattcGGGGCT-TT-TCC---GTCAAT---GAGCACGCCGTTTCAG-AAT-TCCCCCCCCCCCACAA----ATGAATAGG--ACATACCTAT-TAGAAA-CA-TAGTTTGTGTAAGCATGTTTAT-TA-TATCGAAA---A-GT-TCAGTAAG---GTGACAT--GTACAAAGAA-Tg
gi|9 : cacAATACTTATACAT---TT--AGC-----------TACATACAT-GAAATTT-TAGCATTCGTATT-TGCA-TACATGGGTGGG-AGTTTCC-CTTATT-TC
blockSeqs : A CATTATTAACAATA CA A . . . A . . AT AT G CATGTAT . T T C AG G . C . . . . CCCC . . GT . T TT TA . . GGAA A C . C . . T TG . TACATTTGAACCTA . A . A .
blockSeqs : A TTAAACCTTTAAT G . . . . . . . . TC G . . T G T CA G . . . . . . . . . TC . T TC . . . A . A . A . . T TG . TACTTTTGAACCTA . . . . .
blockSeqs : . TTTTACCAATA G . . . . . . . . TT C . . T G G CG A . . . . . . . . . TT . T TC . . . T . C . C . . C TG . CACATTTAAA . . . . .
blockSeqs : . GGACAAAAATA G . . . . . . . . TT G . . A G T CA G . . . . . . . . . TC . T TC . . . A . C . T . . T AG . CACATTT . . . . .
blockSeqs : . ATTTTACCAA A . . . . . . . . TC C . . T A T CA G . . . . . . . . . CT . A CC . . . A . T . T . . C AA . CCTA . . . .
blockSeqs : . ATTTTACCAA A . . . . . . . . GT G . . . . . . . . . . . . . . . . . . . CA . . . A . C . A . . T AG . CA . . . .
blockSeqs : . TTTTACAAA G . . . . . . . . . . . . . . . . . . . . . . . . . . . A . C . T . . T T . . . . . .
blockSeqs : . TTAGCTA G . . . . . . . A . G . C . . . . .
blockSeqs : A . . . . . . C . .
blockSeqs : G . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : TTTTACCAATA************ ** G* T** *** *** **** ** TC** A**** *** ** NG** CACTTTA************* **
originalCons : AATACTTAT-CAA---TT--A-C-AAA-----AATACATACAT-GAATCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAC--GCGCTACAAAATTCCATAAGCAAATA-------TCAA-AGTACC-GTACTTAC--GTAAAGCGTGGGGCT-TT-TCC---GTCAAC---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAA----ATGAATAGG--GCACACNCAT-TTGAAA-TC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAAC---A-GT-TCACTAAG---GTGTCAT--GTGCAAAGAA-TACATAATTCATTG--CGT-AAATCACATT------T------ACCTCCAATTTG-CAAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTT
finalCons : AATACTTAT-CAATTTTACCAATA------------CATACAT-GAATCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAC--GCGCTACAAAATTCCATAAGCAAATA-------TCAA-AGTACCG-TACTTAT--GTAAAGCGTGGGGCT-TT-TCC---GTCAAC---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAA----ATGAATAGG--GCACACNCAT-TTGAAATC--TATTTTGTG--AGCATGTTTAT-TA-GATCGAACA----GT-TCACTAAG---GTGTCAT--GTGCAAAGAA-TACATAATTCATNG--CGT-AAATCACTTTA-------------CCTCCAATTTG-CAAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAAAAATTGACACCGTCTATTCCGAGCCCCTGTGATTCTTTGTCGCACCAAC
Alignments
lowQualScore : 11111111 1111111111 1111111 1111 1111 44444444444444444
lowQualScore : 00000000 3 6666666666 555 44 44 6 3 3 4 8 4 66 66 0 11 0 2 8888888 5 1 77 0 5 5 11 1 5 5 888 888 5 5 0000 0000 66 99 5 3 6666 66 0 5 5 88888 4 2 777 1 55 4 1 8888 5 11111111111111111 5 5 66 5 8 0
lowQualScore : ........ . .......... ... .. .. . . . . . . .. .. . .. . . ....... . . .. . . . .. . . . ... ... . . .... .... .. .. . . .... .. . . . ..... . . ... . .. . . .... . ................. . . .. . . .
lowQualScore : 99999999 3 3333333333 444 33 22 2 1 1 0 0 4 11 99 2 44 4 5 6666666 7 7 44 7 7 7 11 4 0 0 888 888 0 0 6666 6666 99 99 0 4 0000 99 1 0 0 88888 4 9 000 4 55 0 4 8888 0 44444444444444444 0 0 99 0 0 7
consensus : AATACTTAT-C--AA--TT-TTAC--C---AATACAT---ACAT-GAA--TCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAC--GCGCTACAAAATTCCATAAGCAAATA-------TCAA-AGTACC-GTACTTA-TG-TAAAGCGTGGGGCT-TT-TCC---GTCAAC---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAAA----TGAATAGG--GCACACNCAT-TTGAAA-TC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAAC---A-GT-TCACTAAGG---TGTCAT--GTGCAAAGAA-TACATAATTCATTG--CGTAAA-TCAC-TT-------T--ACCTCCAATTTGC-AAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTT
Reference ( family-2025 ) : AATACTTAT-C--AA--TT-TTAC--C---AATACAT---ACAT-GAA--TCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAC--GCGCTACAAAATTCCATAAGCAAATA-------TCAA-AGTACC-GTACTTA-TG-TAAAGCGTGGGGCT-TT-TCC---GTCAAC---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAAA----TGAATAGG--GCACACNCAT-TTGAAA-TC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAAC---A-GT-TCACTAAGG---TGTCAT--GTGCAAAGAA-TACATAATTCATNG--CGTAAA-TCAC-TT-------T--ACCTCCAATTTGC-AAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTT
gi|1 : TACTT---AAAT-AAA--TCTTCTAGCATTCGTATCATGCAATACATTGG-GGGCAGTTCCCTCCTATTACCTAACCAGGAACATGTCGATTGTAC--ACA-TACAAAATTCCATAACAAAACA-------TCAACAGTACCTATACTTACTGATAAAGAGTGGG-CTGTT-TCCCCAGTTAACAGTGAGCACGCCATTTCAGCAATCTTTCGCCG----ACAAAATTACAACTAAGACGCACACACATATTGAAACTCATATGCTGTG--AGCATGTTTACATACGAATGAAC---CTGC-TCA-TAAGGATGCGTTATAGGTGCAAAGAAGTACACAATTCATTGAACGTAAAATCAC-TT-------T----CTTCAATTTGCCGAC-CCGGGATGTC-AAGAATTTAACCTCGTATACCGAAACCCGATCAGTAATTTT
gi|10 : TACTTAT-C--AA--TT-TTAC-----------AT---ACAT-GAA--TCTT-TAGCATTCGTATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTTG--AAAAACACACCA--TGTAT--GCGCTACAAAATATCATAAGCAA
gi|11 : GAAC---A-GT-TCACTAAGG---TGTCAT--ATGCAAACAA-TACATAATTAATTG--CGTAAA-TCACATT-------TAAACTTTC---CTGC-AAC-C--GGAAATC-AGAAATTTAACCTCGTATACCG-AACCCGAtgaaagaaaaagtgagcaag
gi|12 : AATAGG--GCCTACGTAT-TTGAAA-TT-CATTTTGTG--A-C---TTTAT-TT-AATCGA-CGGAA-GTATCAATAAGG---TGTAAT--GCGCAAAGAA-TACATAATGCAATG--CAAAAA-TTA
gi|13 : ttT-T--AG--TT-TT-C--C---AATACGTTGGACAA-AAAAACCTT-TAGCATTCGTATT-TGCA-AACATGGATGGGCAGTTGCC-CTTATT-TCTAGC-AGAAACATACCA--aattt
gi|14 : AAG---TGTCAT--GTGCAAAGAT-TACA----------------GA-TC----C-------T--ACCTCCAATTTGC-AAT-C--GAATGTC-AGAAATTTAACCTCGTATAC
gi|15 : agacttcaaatACTTAT----AA--TT-TTAC--C---AATA--T---ACAC-GAA--CCTT-TAGTATTCGTATT-TGCG-TACATGGGAGGGCACTTTC
gi|16 : AATACTTAT-C--AA--TT-AAAC--CTTTAAT---T---ATAT---A--TCTA--AGCATTCGTATT-TGCA-TACATGGATGGGCA
gi|17 : -------T--ACCTCCAATTTGC-AAC-C--TTAAGTA-AAAACTTTAACCTTGTATACCA-AA
gi|18 : aagttacatttgaaccA--TT-TTAC--C---AA--CAT---GCAT-GAA--TCTT-TAGCATTCCTATT-TGCA-TACACGGGTGGG
gi|2 : AATACTTAT-C--A----T-GGACAAA---AATACTT---AAATCAAA--TCTT-TAGCATTCGTATT-TGCA-TACATTGGTGGCCAGTTTCC-CTTATT-CCTAAC-AGAAACATGTCA--TGTAC--ACACTACAAAATTCCATACGCAAATA-------TCAA-AGTACC-TTACTTA-CG-TAAAGAGTGGGGCT-TT-TCC---GTTAAT---GAGCACGCCATTTCAG-AAT-TTTCGCCG----ACAAA----TAAATAGC--GCACACTCAT-TTGAAA-TC-TATGCTGTG--AGCATGTTTAC-TA-GATCGAAC---T-GT-TCACTAAGG---TGTTAT--GTGCAAAGAA-TACACAATTCATTG--CGTAAA-TCAC-AT-------T--TCCTTCAATTTCC-AAC-C--GGATGTC-AGAAATTTAACCTCGTATACCG-AACCCGATCGATAATTTTTTT
gi|3 : TTAT-C--AA--TT-TTAC------AA-ACAT---ACAT-AAA--CCTT-TAGCATTCATATT-TGCA-TACATGGGTGGGCAGTTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAT--GTGCTACAAAATTTCAAAACCAAATACATGTATTAAA-AGTACC-GTACTTA-TG-TAAAGCATGGGGCT-TT-TCG---GTCAAT---GAACATGTCATTTCAG-AAT-TTTCGCCA----ACAAG----TGAACAGG--GCACACTTAT-CTGAAA-TC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAG----A-GT-TCACTAAAG---TGTTAT--GTGTAAAGAA-TACGTAATTCATT---CATAGG-T-----------------CCTCCAGTTTGC-AACAG--GGATGTCAAGAAATTTAACCTTGta
gi|4 : AAAACTAAT-C--AACATTATTAA--C---AATATAT---ATAT-AAA--TCTT-TGGCGTTCGTATT-TGCA-AGTATGGGTGGGAAGTTTTC-TTTATT-CCAAAA-ATAAAAATATAA--TTTGT--GC---ACAAAA---CA-----AAATA-------TCAA-AGTACC-GCA--TA-GG-GAGGGCGT---GCT-TT-TCC---GTCAAC---GAGCATGCCATTTCGG--------------------AA----TGAATA------------AT-T---AA-TC-TATTTT--------------------AATC-AAC---A-GT-TCGTTAAGG---TGTAAC--GTGCATAGAA-TACACAATTCAAAG--CGTACG-TTAC-TTTTGAACCT--ACCTCCAATTTGC-AAC-C--GGATGTC-AAAAATTTATCCTTATATATTG-AACCCGATTAAGAGTTTTTTT
gi|5 : aacaatggacTACTTAT-C--AAA-TT-TTAC--C---AA--CAT---ACA--GAA--TCTTATA-CATTCATATT-TGCA-TACATGG-TGGGCAGTTTCC-CTTATTACCTAGC-AGAAACATACCA--TGTAT--GCGCTATAAAATTTCATAAGCAAATA-------TCAA-AG----------------TAGA---------------CC---ATCAAT---GAGCACGCCATTTCAG-AAT-TTTCACCG----ACAAA----TGAATAGG--GCACAC-----------------TTTTGTG--AGCATGTTTAT-AA-GATTGAAC---A-GT-TCACTAAGG---TGTTAT--GTGTAAAGAA-TACATAATTCATAA--CGTAAA-TC---------------ATCTCTATTATAC-TAC-C--GGATGTC-AGAAA
gi|6 : ttgaacaaaaacAATACTTAT-ATAAA--TT-TTAC--C---AA--CAT---ATAT-GAA--CCTT-TAGCATTCATATT-TACA-TACATGGGTGGACAATTTCC-CTTATT-CCTAGC-AGAAACATACCA--TGTAT--GCGCTACGAAATTCCATAACCAAATA-------TCAA-AGAACC-GCACTTC-TG-TAATGCATAGAGCT-TT-TCC---GTCAAT---GCGCACGCCATTTCAG-AAT-TTTCGCTG----ACAAA----TGAATAGG--GTATACTCAT-TTGAAA-CC-TATTTTGTG--AGCATGTTTAT-TA-GATCGAAC---A-GT-TCACTAAGG---TGTCAT--ATGCAAAGAA-TTCATAATTCATAG--Catg
gi|7 : aAATACTCAA-G--TA--TT-TTAT--T---AATTCA-----CAT-AAA--TCTT-TAGCGTTCGTTTT-TGCA-TACATTGATGGGCAGTTTCC-CTTATT-CTTAGC-AGAAACACACCA--TTTACATGCGCTACAAAATGTTATTAGCAAATA-------ACGA-AGTACC-ATACTTA-TG-TAAAACATGGGGCT-TTCTCC---CTCAAC---AAGCACGCCATTTCAG-AAT-TTTCGTCG----ACAAA----TAA
gi|8 : aatgtttttcaacacgctgtacaaaGGGGCT-TT-TCC---GTCAAT---GAGCACGCCGTTTCAG-AAT-TCCCCCCCCCCCACAAA----TGAATAGG--ACATACCTAT-TAGAAA-CA-TAGTTTGTGTAAGCATGTTTAT-TA-TATCGAAA---A-GT-TCAGTAAGG---TGACAT--GTACAAAGAA-Tg
gi|9 : cacAATACTTATAC--A----T-TTAG--C-----TACAT---ACAT-GAA--ATTT-TAGCATTCGTATT-TGCA-TACATGGGTGGG-AGTTTCC-CTTATT-TC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CAAAAATTGACACCGTCTATTCCGAGCCCCTGTGATTCTTTGTCGCACCAAC