lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111 111111111111
lowQualScore : 1 11 2 77777777777 1 11 11 2 22222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 3333333333333333333333 11 111111 11 1 5555555555555555555555555555555555555555 11 33 1 1 1 1 1 333333333333 4444444444 1 22222 111 11111111 22222 444444444 1111 4444444444 111 1 1 333 444444444444444444444444444444444444444 777777777777777777777 1 222 55 2 2 2 2 2 22 11 22222222222222222222222222222222222222222222222 4444 2 22 555555 111 2 33 222 55 1 99999999999 4 33 55 4 777 1 4 1 1 2 1 111 1 111 222 1 1 1 4444444 11 1 8888888888888888 666666666 1 44 444444444444 2 22 11 2222 1 11 1 2 2 1 000000000000
lowQualScore : 6 7 88 6 11111111111 3 33 33 0 88 44444444 99 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 33333 0000000000000000000000 11 3 7 88 999999 88 77 6 6 0 11 99 0 4444444444444444444444444444444444444444 88 1 00 5 5 7 5 5 7 7 999999999999 4444444444 7 3 7 3 7 33333 6 777 2 0 99999999 55555 000000000 3 3 33 8888 33 3333333333 3 555 3 0 0 111 777777777777777777777777777777777777777 7 111111111111111111111 5 888 55 3 0 0 3 0 2 0 00 4 4 88 55555555555555555555555555555555555555555555555 3 8888 3 0 3 44 222222 3 444 3 0 2 88 777 55 5 66666666666 0 22 55 0 000 5 0 5 5 2 0 7 7 6 7 333 7 3 1 3 777 333 9 3 3 3 7 3333333 88 3 7777777777777777 000000000 5 4 44 222222222222 0 77 44 9 6666 3 44 3 0 0 5 6 222222222222 88 6
lowQualScore : . . .. . ........... . .. .. . .. ........ .. ..................................................................................... . ..... ...................... .. . . .. ...... .. .. . . . .. .. . ........................................ .. . .. . . . . . . . ............ .......... . . . . . ..... . ... . . ........ ..... ......... . . .. .... .. .......... . ... . . . ... ....................................... . ..................... . ... .. . . . . . . . .. . . .. ............................................... . .... . . . .. ...... . ... . . . .. ... .. . ........... . .. .. . ... . . . . . . . . . . ... . . . . ... ... . . . . . ....... .. . ................ ......... . . .. ............ . .. .. . .... . .. . . . . . ............ .. .
lowQualScore : 0 0 33 7 00000000000 3 88 88 0 00 22222222 22 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 88888 5555555555555555555555 33 3 3 33 222222 33 77 7 7 8 00 44 0 8888888888888888888888888888888888888888 33 0 33 0 0 0 0 5 3 3 333333333333 3333333333 3 3 3 7 3 33333 7 555 5 8 88888888 00000 000000000 2 2 22 2222 22 8888888888 5 000 2 0 0 222 444444444444444444444444444444444444444 0 000000000000000000000 5 000 77 3 0 0 0 0 5 0 00 0 0 55 55555555555555555555555555555555555555555555555 0 5555 0 0 0 00 000000 0 000 0 0 5 55 000 00 5 00000000000 0 00 00 0 000 0 0 0 0 5 0 3 0 7 3 777 3 3 0 7 777 333 7 3 3 3 7 3333333 33 3 0000000000000000 555555555 5 0 00 555555555555 0 55 00 0 3333 3 33 3 0 0 0 0 555555555555 00 0
consensus : AAATTAACAAGTTGGTTCT--GTA-CTTGAT-C-ATA-AC--AG-TGTG--AAAGA--TTGTNNAAAAAAA-T---AA--ACAA--A------TCTN-T---TTG-T-AG--ACA---AAATANGTT-CA-------------TGTACAAT-TCT---GAGAATTGT--AANATTTTGTT--TATAAC-------TAAGATTA------TTGTCGCCATACAAAATAAGTTCTAAAGATAAA-GGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAANTG-------AAGTGTGG-TTC--AA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-TTTTCTCTAAGAAAGCGCTTAAATAAATCAGCATTATGATTACTAGCTTTATTTCGCAGTTGACAATGCAATACGTTTGCTTTTCGATTGCCATAGT---TAAAATAA-TTTTTAGGTTTAATG-A-TATATACTTTTAATGGCACGC-TTGAAAGATACTANTGTAGGAAGACTTCGAATATTCAAGG-TAGGTCAT---TCCACGATTTTATAGTCGAAGGGATAAAGC-----TATTCATAT---------ACGAAGTTGTTTTCACTA-NNGGAATATTA-------A-NTTTNAGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTAT-G-GGGC-CAAAGTACATGGCCGAAGT-TAAGTCCTTGCAAATATTGGG--GCTTTAATCCATG-AACTATTTTGTA---GAACANCAAC----AAGTTTTA-TGAATTTT--CCTTCTTATTGGCTAAGGTTATCCCANCCTAANTCAGTTATANAGTGCCGATCTNGANGAANTTATTCCCACTATAAACCCGANGATATTANCGTNCTGCNGCTAGTNACCGGANCATCCTTCATANTAATATNGGCNATCCCTTTCTGTACAATTGTATCCCANACNGNATTTGNATACTCCGAGGATNGGATCGAACANTNAGAAAAATAA--TTTTATCAATGAATCCCTTTTAAGTTGATA-CTTAA----CATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATTGGATGTATT--GTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATGAGTGTCAACATTTG-AATAAATGGTCCATNTGTGACCAAATTTTACCCATGGATAAGAAATATTTTTTTCTACTAAAATCCATATT-AACTNTTTTGATTGGATTAAA-T-TCAA---CTGCCCATTTATTAG-ACCACTGATG-TAT-TNTT-------TCAAG--AT-CATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGAC-ATACTATAAAGAGAAAGTAATCCAATCTGCAAAGAGTCNTAN-GGATTTTCTTTAATGCCTAGGTAGAGATTGTCAATTTAATAAACAAA-AGAAAAGAAAGGGTCCTAAAACTGACCCTTGA-GG-GACT-CCTGAATTGGTTATGTCTACGGGGTTGATGAAAAACCATCCAACACTACATGTACATGTACCTTNNGAGTTCTATCAGACAAATGATTTTCAATTCA
Reference ( gi|1 ) : AAATCATCAAGTTGGTTCT--GTA-CTTGATAC-ATATAC-TAG-TGTG--AAAGA--TT-TAAAAAAAAAAT---AA--ACAA--A------TCTA-T---TTG-T-AG--ACA---AAATATATT-TA-------------TGTACAAT-TCT---GAAAATTGT--AACATTTTGTT--CATAAC-------TAAGAATA------TTGTCACCATACAAAATAAGTTCTAAAGATAAA-GGTAA------TTGTA-ATTGTAG-ATTATT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGGATTT--AA-G--ACTA--TTCTAACAAAACTCACAATCAGGA-ATTTCTCTACGACAGTGCTTAAATAAATCAGCATTAAGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAACTTTTTAGGTTTAATGGAATATATTCTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGAGATAAAGC-----TATTCATAT---------ACGAAGTTGTTTTCACTA-CTAGAATGTTA-------A-CTTTTAGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTAT-G-GG---CAAAGTACATGGCCAAAGTTTAAGTCCTTGCAAATATTGGG--ACTTTAATCC-TGAAACTATTT--TA---GAACATCAACG---AAGTTTTATTGAATTTTAACCTTCGTATTG-CTAAGGT-ATCCCATCC-AAGTCA-TTATTAAGTGTCGATCTTGATGAATTTA---CCATTA-AAACTTGAAAAT--TATAGTGCTGCTGC-A-TA--TTGAACATCTT-CACATTAA-ATTAGCA-TCTCTTTCTGTACAAT--T--TCCAAACAATATTTGAATATTC-AAAGATGGGGTCGAACAT-AAGAAAAATAAATTTTTATCAATGAATCCCTTTTAAGTTGATTTCTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTAT-GGATATGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCC-CAAGT-G-AGTATCAGTGTCAACATTTGGAATAACTGGTCCATGT-TGACCAAATTTTACCCTTGGATAAGAAATATTTTTTTCTACTAAAATCCATATT-AATTGTTTTGATTGGATTAAA-T-TCAA---CTGCTCATTTATTAG-ACCACTGATG-TAT-TATT-------TCAAG--AT-CATTAGTCAATGAATTTGCAGAATTGACAATG--TCAT-CATT-GACTATACTATAAAGAGAA-GTA-TC--ATCTGCAAAGAGTCTTAAAGGATTTTCT--A-TGTCTA--TAGAGAT-GTCA--TTAATAAACAAA-GGAAAAGAAAGAGTCCTAAAACAGACCCTTGA-GG-AACT-CCTGAATTGGT-ATGTCTA-GGGGTTGATGAAAAACCACCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATCCACCAAACGTACTCTGTTTGGTAGGACGGGAC
gi|4 : AAATTAACAAGTTGGTTCTCTGTAACTTGATTCGATATACACAG-TGTGGGAAAGA--TTGTTTAAAAAAATT---AA--ACAA--A------TCTAAT---TTG-T-NN--NNN---NNNNNNNNN-NN-------------NNNNNNNN-NNN---NNNNNNNNN--NNNNNNNNNNN--NNNNNN-------NNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAGGTAA------TTGTA-GTTGTAG-ATTATT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGGTTTC--AA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-
gi|7 : gtaagaaatataaaAAATTAACACGTTGGTTCT--GTA-CTTGATAC-A-------AG-TGTG--AAAGA--TT-TTTAAAAAT--T---AA--ACAA---------------------------------------------A-------------TGTACAAT-TC---------------AACATTTTGTT--TATAAC-------AGAGATTA------TTGTCACCATACAAAATAAGTTCTAAAGATAAA-GGTAAAAATTTTTGTA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTGTTTGTCTTTGTG--TA-CAATATTTTGGACACATCA-GTATATATAAATTGGTTTATTGAGTGTGGGTTTTCAATGGTACTATTTTCTAACAA
gi|11 : aaaaaCAAGTTGGTTCT--GTACCTTGTT----TA-AC-GAGAAATG--AAAAAATTT-TAAAGAA--------AA--ACAA--A------T-TA-T---TTG-TCAGATACA---AAATAAGTTCTAAGATAAAGGTAATTGTAC-AT-TGT----AGAATTGTTAAAAACTTTGTttaac
gi|9 : gaaaaaaaattaaaaacaaagttggttctgtaacttgataaa--AGAGG--TTATAAGATGAAATT---AATTACATGTA------TCTC-T---TTG-T-AT--CCA---AGATA-------------------------AAT-TCT---AGATATTGT--AATGTTTTGGC--TGTTAA-------TAAGATTGT-----TTGTTG----GCAAAATTAGTTT----GATCG-----AA------TTGCA---TGTA-----ATT-AAAACCTAAGAAGTAGTATTTGCCTTTGTGAATATTAATATTTTGGACACTTCATG-A---GAAAGATG-------Aattgtatatgtctttgtgtaaaat
gi|11 : AAAAAAAATTAAAA--ACAA--AGTTGGTTCTG-TAACTTGAT-AA--ACA---AG-T-TGGT-TC-------------TGTACCTTGTTTAACGAGAAATGA--AAAAATTT-------TAAA-------GAAAAACAAATTATTTGTCAG-ATACAAAATAAGTTCTAA-GATAAA-GGTAA------TTGTACATTGTAGAATTGTTAAAAACTT-TGTATT-GTATATGTCTTTGTG--TA-AAATttccctgatgaa
gi|3 : gAC---AA--AAAA--G------TTTA-G---GTA-T-GG--ATATGGAAATACATT-CA-------------TGTACAAT-TCT---GAAAATTCT--AACATTTTGTT--TATAAC-------TGAGATTA------TTGTCACCATACAAAATAAGTTCTAAAGATAAA-TGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACCT-TGTATCAGTATTTGTCTTTGTG--TA-TGATATTTTGGACACTTCA-G-A---AAA----------------------TC--AA-G--ACTG--TTCTGACAAATCTCACAATCAGGATTTTTTTTTAAGAAAGCGTTTAAATAAATCAGCATTATGATTACTAGCTTTATTTCGCAATTGACAATGCAATACATTTGCTTTTCGATTGCC--AGT---TAAAATAA-GTTTTAGGTTTAATAGAATATATATTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAAACTTAGAATACTCAAGGATAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATAT---------ACAAAGTTGTTTTCACTA-CAGGAATGTTA-------G-ATTTTAGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTAT-GAGG---CAAAGTACATGGCCAAAG--TAATTCC-TGCAAATATTGAG--GATTTAATCCATG-AACTATTTTGTA---GAACAGC-AC----AAG-TTTA-TGAATT
gi|12 : AA--A------TGTT-T---TTG-T-AG--GCA---GAATGACTT-CA-------------TGTATAAT-T------------GC--AATATTGTGCTTGCATAACATACACGTAAGATTC------TTATCTCTATTCAAAATAAGTTCCAAGAATAAG-GTTAA------TGGCA-ATTACAA-ATTACT-TAAACTT-Tacttta
gi|18 : ACAAAACTCACAACCAGGA-TTTTCTCTAAGAAAGTGCTTAAATAAagattaa
gi|6 : TTTCGCAGTTGACAATG-AAT-TGTTTGCTTTACGATTTCCATAAT---TA-------TTTCAAGAATTGATG----------TTTTTATGGC-TAC-CTGA-------TAATGCTGGGAGACTTCTAAT-TTC-----TA-GTCATAAGTC----ATTTTATAGT------AATAAAAC-----TGTTCATATATGCTGGAGACGAAG-------CA--A-ATGGAACATTA-------A-ACTTAAGAGG--TTTCTTGTACCTTAGAGAATAAGAGTTCT-G-AGATAGAAAAAAAATGATTGACGT---GGATTTTGTAAATATTGGG--GCGTTATTC
gi|2 : TCGAT-GCCATAGTATTTAAAATAA-TTTTTAGGTTTACTGTA-TATATACTTTTAATGGCACGCCTTGAAAGATACTATTGTAGGAAGACTTCGAATATTCAAGG-TAGGTCAT---TCCACAATTTTATAGTC-AAGGG-TAAAGC-----TATTTCTAT---------ACGA-GTTGTTTTCACTAACGGGAATATTA-------AATTTTTAGAGTCAGTCCTGGTTTCTTAAAGAATAAG-GTTAT-G-AGGC-CAAAGTACATGGCCGAAGT--AAGTCCT-G-AAATTTTGGGGGACTT-AATCCATGAA-CTATTTG-TAATTGAACAC--AC-----AGTTTCAT-GAATTTTT-CCTTCTTATTG-CTAAGGTTATCCCATCC-AAGTCAGTTATAAAGTGTCGATCTTGATGA-TTTA---CC-CTATAAACT-GAAGATATTAACGTGCTGCTGCTA-TC--TGGAACATCTTTCA-ATTAATATGAGCAATCTCTTTCTGTACAAT--TATCCCAAACAACATTTGAATATTCCAAAGATGGG-TCGAACATTAAGAAAAATAA--TTTTATCAATGA-TCCCTTTTAAGTTGATA-CTTAA----CATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATTGGATGTATT--GTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATGAGTGTCAACATTTG-AATAAATG-TCCATTTGTGAACAA-TTTTACCCATG-ATAAAGAATATTTTTT-CTACTAAA-TCCATATTTAATGTTTTTGATTGGATTAAAATATCAATCACTGCCCCTTTATTAGGACCACTGATGATATGTATTCTTTTACTCAATTCATACATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGAC-ATACTATAAAGAGAAAGTAATCCAATC-GCAAAGAGTCTTAT-GGATTTTCT--AATGT-TAGGTAGAGATTGTCAATTTAATAAACAAT-AGAAAAGAAAGGGTCCTAAAACTG-CCATTGA-GGGAACTTCCTGAATTGGTTATATCTACGGGGTTGATGAAAAAC-ATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCAtatatgctatt
gi|16 : taT---TCCACGACTTTATGGTTGAATATATAAAGCTATAGTATTCATAA---------ATGAATTTGTTTTCTCCA-ATAGAAAATTATACATATA-CTTTGAGA
gi|14 : --ATCCTGGTTTCTTAAAGAATAAGAGTTATGG-GG---CAAGGTACATGGCCAAAG--TAAGTCC-TGCA----------------AATCCATG-AACTATTTTGTA---GAACA-CAACATGCAAG-TTTA-TGAATTTT--CCTTTTTATT
gi|8 : AGCTATTT--TG---TAAAATAAGAT---AAGTTTT--TGAACTTT--TCTTC-TAGTGGCTAAAGT-ATTCCAGCCTAATTCA-TTATACAGTGCTGATCTAGAAGAAGTTATTCTCATT-----CCCG-TGAT--TAT--TCTTGCAGC-AGTAACCTGACCATTCT-C-TAGTAA-ATTGGCT-TCCCTTTCTGTACAATTGT--CCCACACTGAATTTGCATACTC-GAGAATTGGA-CGAATAA-CAGAAAAA
gi|5 : TTTTATCAATGAATCCCTTTTAAGTTGAT
gi|5 : ATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTT--TCTACTAAAATCCATATT-AACTGTTTTGTTTGGATTAAA-T-TCAA---CTGCCCATTTATTAA-ACCACTGATG-TAT-TTTT-------TCAAG--AT-CATTAGTacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattataaatggtccatgttgaccaaattttacccatggataagaaatatttttctactaaaatccatattaactgttttgtttggattaaattcaactgcccatttattaaaccactgatgtattttttcaagatcattagt
gi|13 : ttttatcaatgaatcccttttaagttgatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattACCAAATTTTACCCATGGATAAGAAAT-TTTTTTTCTACTAAAATCCATATT-AGCTATTTTGATTGGATTAAA-T-TCAA---CTGCACATTTATTAG-ACCACTGATG-TAT-TCTT-------TCAAG--AT-CATTAGTCAATGAATTTGCAG
gi|10 : --ATTTGCAAAGAGTCATAA-GGATTTTTTTTA-TGCCTA--TAGAGAT-GTCA--TTAATAAACAAAAGGAAAAGAAAGGGTCCTAAAACTAA-TCTTAATGG-GACT-CCTGAATTGGT-ATGTCTA-GGGGTTGATGAAAAACCATCCAATACTACATGTACATGTACCTTAAAAGTTCTATCAGACAAATGATTTTCAATT
gi|17 : gaaAACAAA-AGGAAAAAAAGCGTCGTAAAACTGACCCTTGA-GG-GACT-C
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TTATTAAGGTGTAAATTAATCCATATTCTGTTTTTATAAAATATACAAGTTTGTGTATTTTCCTTTGAGTTGCTAGAAAATCCCACCCAAATTCATCACACAGCTGTATCT
Alignments
lowQualScore : 11 1 6666666666666 11 2222 222 333333333333333333333333333333333333333 222222222222 1111111 1111 111111 111 333333333333333333 1 11 11 1 111 1 333333 1 2222 22222 333333333 2222222 11 2222 222 11 1111 111 33333333 11 1 2 2 2 555555555555555555555555 11 6666666666 1 111 2 22 555 111 11 222 11 1 4444 1 22 1 222 2 2 1 111 111 1 22222 2222 11 1 11 1 1 2 1 1 1 11 333333333333 2 33 1 1 11 2 2 999999999999
lowQualScore : 88 3 9999999999999 88 1111 222 333333333333333333333333333333333333333 5 999999999999 1 1 5 1 77 8888888 5 5 4444 44 55 666666 55 5 5 5 99 6 8 8 444 0 3 888888888888888888 0 33 33 0 0 4 0 6 888 3 3 777 3 0 444444 33 3 2 0 3 1 3 7777 4 88 1 0 00000 222222222 0 0 22 8 6666666 1 99 11 0 4444 444 11 3 0 1 1111 3 5 77 111 77777777 6 7 33 6 99 3 5 0 5 3 2 1 2 1 7 1 0 1 1 88 000000000000000000000000 66 1 1 0000000000 1 2 888 1 3 11 11 0 333 1 222 1 0 444 0 1 99 222 88 7 3 2222 5 66 77 5 000 2 0 6 1 3 3 2 3 333 3 0 1 111 777 0 0 55555 1 1111 33 0 88 5 5 0 5 5 5 7 1 44 777777777777 3 00 0 0 3 8 0 33 3 3 6 999999999999 22 0
lowQualScore : .. . ............. .. .... ... ....................................... . ............ . . . . .. ....... . . .... .. .. ...... .. . . . .. . . . ... . . .................. . .. .. . . . . . ... . . ... . . ...... .. . . . . . . .... . .. . . ..... ......... . . .. . ....... . .. .. . .... ... .. . . . .... . . .. ... ........ . . .. . .. . . . . . . . . . . . . . . .. ........................ .. . . .......... . . ... . . .. .. . ... . ... . . ... . . .. ... .. . . .... . .. .. . ... . . . . . . . . ... . . . ... ... . . ..... . .... .. . .. . . . . . . . . .. ............ . .. . . . . . .. . . . ............ .. .
lowQualScore : 33 3 3333333333333 33 3333 000 333333333333333333333333333333333333333 7 666666666666 7 0 7 7 99 6666666 7 7 6666 44 99 444444 99 7 7 7 22 7 0 0 000 8 8 333333333333333333 0 88 88 0 7 0 7 7 777 2 2 555 2 0 888888 88 2 0 0 2 0 2 8888 6 22 4 8 00000 000000000 8 8 00 0 0000000 0 00 00 8 4444 222 44 2 8 0 6666 2 7 77 777 33333333 7 3 33 7 00 2 6 6 0 2 0 0 0 0 5 0 7 0 0 33 333333333333333333333333 00 0 0 3333333333 0 0 000 0 7 77 33 7 777 0 777 0 7 000 7 0 77 333 33 3 3 5555 5 55 55 5 555 5 0 7 0 3 2 5 2 555 2 0 0 000 555 2 0 00000 0 2222 88 0 55 5 5 0 5 5 0 3 0 33 333333333333 7 77 0 2 2 8 0 88 7 3 7 333333333333 00 7
consensus : AAATTAACAAGTTGGTTCT--GTA-CTTGAT-C----ATACAC-AGTGTG--AAAGATTTTT-AAAAAAATT--AAACAAA------TCTN-T---TTG-TAGACA---AAATANATTCATGTACAAT-TCT---GAGA-ATTGTAACA-TTTTGNTT--ATAAC-------TAAGATTA-TT-GTC-GCCATACAAAATAAGTTCTAAAGATAAA-GGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGGN--TTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-TTTTCTCTAAGAAAGCGCTTAAATAAATCAGCATTANGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAA-TTTTTAGGTTTAAT--G--ATATATACTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAG--GGTAGGTCATTCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTAATGG-AACGTTA-------AATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGG-C-AAAGTACATGGCCGAAGTT-AAGTCCTTGCAAATATTGGGG--CTTTAATCCATGAA-CTATTTT-GTA---GAACANCGA----C-AAGTTTTAT-GAATTTT--CCTTCTTATTGGCTAAGGT-ATCCCATCC-AANTCA-TTATANAGTGTCGATCTTGATGAATTTA---CCATTA-AAACTCGAAGAT--TAT-GTGCTGCTGC-TA-T--CC-GAACATCCTTCACATTAA-ATTAGC-ATCTCTTTCTGTACAATT---TCCCAAACAANATTTGAATATTCCAAAGATGGGGTCGAACA-TAAGAAAAATAA--TTTTATCAATGAATCCCTTTTAAGTTGATA-CTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATNNGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATNAGTGTCAACATTTGGAATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTTTTTCTACTAAAATCCATATT-AACTGTTTTGATTGGATTAAA-T-TCAA---CTGCCCATTTATTAG-ACCACTGATG-----TATTCTTT----CAAG--AT-CATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGACTATACTATAAAGAGAAAGTAATCCAATCTGCAAAGAGTCTTAA-GGATTTTCT--AATGTCTA--TAGAGAT-GTCA--TTAATAAACAAAAG-AAAAGAAAGGGTCCTAAAACTGACCCTTGA-GGGA--CTCCTGAATTGGT-ATGTCTA-GGGGTTGATGAAAAACCATCCAACACTAC------------CTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
Reference ( family-2021 ) : AAATTAACAAGTTGGTTCT--GTA-CTTGAT-C----ATA-AC-AGTGTG--AAAGATTGTNNAAAAAAAT---AAACAAA------TCTN-T---TTG-TAGACA---AAATANGTTCATGTACAAT-TCT---GAGA-ATTGTAANA-TTTTGTTT--ATAAC-------TAAGATTA-TT-GTC-GCCATACAAAATAAGTTCTAAAGATAAA-GGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAANTG-------AAGTGTGG---TTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-TTTTCTCTAAGAAAGCGCTTAAATAAATCAGCATTATGATTACTAGCTTTATTTCGCAGTTGACAATGCAATACGTTTGCTTTTCGATTGCCATAGT---TAAAATAA-TTTTTAGGTTTAAT--G--ATATATACTTTTAATGGCACGC-TTGAAAGATACTANTGTAGGAAGACTTCGAATATTCAAG--G-TAGGTCATTCCACGATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTANNGG-AATATTA-------ANTTTN-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGGGGCC-AAAGTACATGGCCGAAGTT-AAGTCCTTGCAAATATTGGGG--CTTTAATCCATGAA-CTATTTT-GTA---GAACANCAA----C-AAGTTTTAT-GAATTTT--CCTTCTTATTGGCTAAGGTTATCCCANCCTAANTCAGTTATANAGTGCCGATCTNGANGAANTTATTCCCACTATAAACCCGANGATATTANCGTNCTGCNGC-TAGTNACCGGANCATCCTTCATANTAATATNGGCNATCCCTTTCTGTACAATTGTATCCCANACNGNATTTGNATACTCCGAGGATNGGATCGAACANTNAGAAAAATAA--TTTTATCAATGAATCCCTTTTAAGTTGATA-CTTAA----CATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATTGGATGTATT--GTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATGAGTGTCAACATTTG-AATAAATGGTCCATNTGTGACCAAATTTTACCCATGGATAAGAAATATTTTTTTCTACTAAAATCCATATT-AACTNTTTTGATTGGATTAAA-T-TCAA---CTGCCCATTTATTAG-ACCACTGATG-----TATTNTTT----CAAG--AT-CATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGAC-ATACTATAAAGAGAAAGTAATCCAATCTGCAAAGAGTCNTAN-GGATTTTCTTTAATGCCTAGGTAGAGATTGTCAATTTAATAAACAAAAG-AAAAGAAAGGGTCCTAAAACTGACCCTTGA-GGGA--CTCCTGAATTGGTTATGTCTACGGGGTTGATGAAAAACCATCCAACACTACATGTACATGTACCTTNNGAGTTCTATCAGACAAATGATTTTCAATTCA
gi|1 : AAATCATCAAGTTGGTTCT--GTA-CTTGATAC----ATATACTAGTGTG--AAAGATTTAAAAAAAAAAT---AAACAAA------TCTA-T---TTG-TAGACA---AAATATATTTATGTACAAT-TCT---GAAA-ATTGTAACA-TTTTGTTC--ATAAC-------TAAGAATA-TT-GTC-ACCATACAAAATAAGTTCTAAAGATAAA-GGTAA------TTGTA-ATTGTAG-ATTATT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGGA--TTTAA-G--ACTA--TTCTAACAAAACTCACAATCAGGA-ATTTCTCTACGACAGTGCTTAAATAAATCAGCATTAAGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAACTTTTTAGGTTTAAT--GGAATATATTCTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAG--GGTAGGTCATTCCACAATTTTATAGTCGAAGAGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTACTAG-AATGTTA-------ACTTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGGG--C-AAAGTACATGGCCAAAGTTTAAGTCCTTGCAAATATTGGGA--CTTTAATCC-TGAAACTATTTT---A---GAACATCAA----CGAAGTTTTATTGAATTTTAACCTTCGTATTG-CTAAGGT-ATCCCATCC-AAGTCA-TTATTAAGTGTCGATCTTGATGAATTTA---CCATTA-AAACTTGAAAAT--TATAGTGCTGCTGCATATT-----GAACATC-TTCACATTAA-ATTAGC-ATCTCTTTCTGTACAATT----TCCAAACAATATTTGAATATTC-AAAGATGGGGTCGAACA-TAAGAAAAATAAATTTTTATCAATGAATCCCTTTTAAGTTGATTTCTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTAT-GGATATGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCC-CAAGT-G-AGTATCAGTGTCAACATTTGGAATAACTGGTCCATGT-TGACCAAATTTTACCCTTGGATAAGAAATATTTTTTTCTACTAAAATCCATATT-AATTGTTTTGATTGGATTAAA-T-TCAA---CTGCTCATTTATTAG-ACCACTGATG-----TATTATTT----CAAG--AT-CATTAGTCAATGAATTTGCAGAATTGACAATG--TCAT-CATT-GACTATACTATAAAGAGAA-GTA-TC--ATCTGCAAAGAGTCTTAAAGGATTTTCT---ATGTCTA--TAGAGAT-GTCA--TTAATAAACAAAGG-AAAAGAAAGAGTCCTAAAACAGACCCTTGA-GGAA--CTCCTGAATTGGT-ATGTCTA-GGGGTTGATGAAAAACCACCCAACACTAC------------CTTTTGAGTTCTATCAGACAAATAATTTTCAATCCA
gi|10 : AATTTGCAAAGAGTCATAA-GGATTTTTTTTA-TGCCTA--TAGAGAT-GTCA--TTAATAAACAAAAGGAAAAGAAAGGGTCCTAAAACTAATC-TTAATGGGA--CTCCTGAATTGGT-ATGTCTA-GGGGTTGATGAAAAACCATCCAATACTACATGTACATGTACCTTAAAAGTTCTATCAGACAAATGATTTTCAATTCccaaacgtactctgtttggtaggacgggac
gi|11 : gaAAAAAAATTAAAAACAAAGTTGGTTCTG-TAACTTGATAAACA---AGTT-GGTTC-TGTACCTTGTTTAACGAGA-AATGAAAAAATTTTAAAG--AAAAA-------CAA-ATTA-TTTGTCAG--ATACAAAATAAGTTCT-AAGATAAA-GGTAA------TTGTACATTGTAGAATTGTTAAAAACTT-TGTATT-GTATATGTCTTTGTG--TA-AAAT
gi|12 : gaAAA------TGTT-T---TTG-TAGGCA---GAATGACTTCATGTATAAT-T-------------GCAATA-TTGTGCTTGCATAACATACACGTAAGATTC-TT-ATC-TCTATTCAAAATAAGTTCCAAGAATAAG-GTTAA------TGGCA-ATTACAA-ATTACT-TAAACTT-T
gi|13 : ACCAAATTTTACCCATGGATAAGAAAT-TTTTTTTCTACTAAAATCCATATT-AGCTATTTTGATTGGATTAAA-T-TCAA---CTGCACATTTATTAG-ACCACTGATG-----TATTCTTT----CAAG--AT-CATTAGTCAATGAATTTGCAGagattaa
gi|14 : --ATCCTGGTTTCTTAAAGAATAAGAGTTATGGGG-C-AAGGTACATGGCCAAAG-T-AAGTCC-TGCA----------------AATCCATGAA-CTATTTT-GTA---GAACA-CAACATGC-AAG-TTTAT-GAATTTT--CCTTTTTATT
gi|15 : TTAATCCATATT-CTGTTTTTATA---AAATAT--A----C-AAGTTT-GT-GTATTTT--CCTT-TGAGTTGCTA-GAAAATCCCACCCAAATTCA-TCACACAG
gi|16 : ttattaaggtgtaaaTTCCACGACTTTATGGTTGAATATATAAAGCTATAGTATTCATAAA---------TGAATTTGTTTTCTCCAATAG-AAAATTATACATATACTTTG-AGActgtatct
gi|17 : AACAAAAG-GAAAAAAAGCGTCGTAAAACTGACCCTTGA-GGGA--CTC
gi|18 : attattattgtcACAAAACTCACAACCAGGA-TTTTCTCTAAGAAAGTGCTTAAATAA
gi|2 : TCGAT-GCCATAGTATTTAAAATAA-TTTTTAGGTTTACT--GT-ATATATACTTTTAATGGCACGCCTTGAAAGATACTATTGTAGGAAGACTTCGAATATTCAAG--G-TAGGTCATTCCACAATTTTATAGTC-AAGGG-TAAAGC-----TATTTCTATA---------CGA-GTTGTTTTCACTAACGGGAATATTA-------AATTTTTAGAGTCAGTCCTGGTTTCTTAAAGAATAAG-GTTATGAGGCC-AAAGTACATGGCCGAAGT--AAGTCCT-G-AAATTTTGGGGGACTT-AATCCATGAA-CTATTT--GTAATTGAACAC--A----C-A-GTTTCAT-GAATTTTT-CCTTCTTATTG-CTAAGGTTATCCCATCC-AAGTCAGTTATAAAGTGTCGATCTTGATGA-TTTA---CC-CTATAAACT-GAAGATATTAACGTGCTGCTGC-TA-T--CTGGAACATCTTTCA-ATTAATATGAGCAATCTCTTTCTGTACAATT--ATCCCAAACAACATTTGAATATTCCAAAGATGGG-TCGAACATTAAGAAAAATAA--TTTTATCAATGA-TCCCTTTTAAGTTGATA-CTTAA----CATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATTGGATGTATT--GTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATGAGTGTCAACATTTG-AATAAATG-TCCATTTGTGAACAA-TTTTACCCATG-ATAAAGAATATTTTTT-CTACTAAA-TCCATATTTAATGTTTTTGATTGGATTAAAATATCAATCACTGCCCCTTTATTAGGACCACTGATGATATGTATTCTTTTACTCAATTCATACATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGAC-ATACTATAAAGAGAAAGTAATCCAATC-GCAAAGAGTCTTAT-GGATTTTCT--AATGT-TAGGTAGAGATTGTCAATTTAATAAACAATAG-AAAAGAAAGGGTCCTAAAACTG-CCATTGA-GGGAACTTCCTGAATTGGTTATATCTACGGGGTTGATGAAAAAC-ATCCAACACTAC------------CTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
gi|3 : taAC---AAAAAAG------TTTA-G---GTA-TGGATATGGAAATACATTCATGTACAAT-TCT---GAAA-ATTCTAACA-TTTTGTTT--ATAAC-------TGAGATTA-TT-GTC-ACCATACAAAATAAGTTCTAAAGATAAA-TGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACCT-TGTATCAGTATTTGTCTTTGTG--TA-TGATATTTTGGACACTTCA-G-A---AAA------------------------TCAA-G--ACTG--TTCTGACAAATCTCACAATCAGGATTTTTTTTTAAGAAAGCGTTTAAATAAATCAGCATTATGATTACTAGCTTTATTTCGCAATTGACAATGCAATACATTTGCTTTTCGATTGCC--AGT---TAAAATAA-GTTTTAGGTTTAATAGA--ATATATATTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAAACTTAGAATACTCAAG--GATAGGTCATTCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CAAAGTTGTTTTCACTACAGG-AATGTTA-------GATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGG-C-AAAGTACATGGCCAAAG-T-AATTCC-TGCAAATATTGAGG--ATTTAATCCATGAA-CTATTTT-GTA---GAACAGC-A----C-AAG-TTTAT-GAATT
gi|4 : AAATTAACAAGTTGGTTCTCTGTAACTTGAT-TCGATATACAC-AGTGTGGGAAAGATTGTTTAAAAAAATT--AAACAAA------TCTAAT---TTG-TNNNNN---NNNNNNNNNNNNNNNNNNN-NNN---NNNN-NNNNNNNNN-NNNNNNNN--NNNNN-------NNNNNNNN-NN-NNN-NNNNNNNNNNNNNNNNNNNNNNNTTAAAAGGTAA------TTGTA-GTTGTAG-ATTATT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGGT--TTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-acttta
gi|5 : gtaagaaatataaa--TTTTATCAATGAATCCCTTTTAAGTTGATA-C
gi|5 : ATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTT--TCTACTAAAATCCATATT-AACTGTTTTGTTTGGATTAAA-T-TCAA---CTGCCCATTTATTAA-ACCACTGATG-----TATTTTTT----CAAG--AT-CATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattataaatggtccatgttgaccaaattttacccatggataagaaatatttttctactaaaatccatattaactgttttgtttggattaaattcaactgcccatttattaaaccactgatgtattttttcaagatcattagt
gi|6 : ttttatcaatgaatcccttttaagttgatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattTTTCGCAGTTGACAATG-AAT-TGTTTGCTTTACGATTTCCATAAT---TA-------TTTCAAGAATTGAT--G----------TTTTTATGGC-TAC-CTGA-------TAATGCTGGGAGACTTCTAAT-TTCTAGTCA-TAAGTCATT--------TTATAGT------AATAAAAC-----TGTTCATATATGCTGGAGACGAAG-------CA--AATGG-AACATTA-------AACTTA-AGAGG--TTTCTTGTACCTTAGAGAATAAGAGTTCTGAGATAGAAAAAAAATGATTGACGTG-GATT--TTGTAAATATTGGGG--CGTTATTCTATATG-CTATT
gi|7 : AAATTAACACGTTGGTTCT--GTA-CTTGAT------ACA-A---GTGTG--AAAGATTTTT--AAAAATT---AAACAAA------T---------------------------------GTACAAT-TC--------------AACA-TTTTGTTT--ATAAC-------AGAGATTA-TT-GTC-ACCATACAAAATAAGTTCTAAAGATAAA-GGTAAAAATTTTTGTA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTGTTTGTCTTTGTG--TA-CAATATTTTGGACACATCA-GTATATATAAATTGGTTTATTGAGTGTGGGTTTTCAATGGTACTATTTTCTAACAA
gi|8 : aaaaaAG-CTATTTT-GTA---AAATAA-GA----T-AAGTTTT-T-GAACTTT--TCTTCT-AGTGGCTAAAGT-ATTCCAGCCTAATTCA-TTATACAGTGCTGATCTAGAAGAAGTTATTCTCATT-----CCCG-TGAT--TAT--TCTTGCAGC--AGTAACCTGACCATTCTC--TAGTAA-ATTGGCT-TCCCTTTCTGTACAATTG--TCCCACACTGAATTTGCATACT-CGAGAATTGGA-CGAATAA-CAGAAAAAttaac
gi|9 : A------TCTC-T---TTG-TATCCA---AGATA-----------AAT-TCT----AGATATTGTAATG-TTTTGGCT--GTTAA-------TAAGATTGTTT-GTT-G----GCAAAATTAGTTT----GATCG-----AA------TTGCA---TGTA-----ATT-AAAACCTAAGAAGTAGTATTTGCCTTTGTGAATATTAATATTTTGGACACTTCATG-A---GAAAGATG-------A
Alignments
lowQualScore : 11 1 555555 22 11 1 11 11111 222222222222222222 2222222 222222222222 1111111 1111 111111 111 2222222 111 1 11 11 1 111 1 333333 1 1 111 22222 333333333 1 11 11 222 11 1111 11 111 33333333 111 11 11 1 2 1 1 2222222222 1 44444444 1 1111 1 111 1 1 2 2 1 11 1 2222 1 11 1 1 1 1 1 1 1 1 111 1 22222 2222 11 1 11 1 1 1 1 1 1 1 22 11 1 11 1 1 11 1 1 666666666666
lowQualScore : 88 3 333333 00 88 0 4 11 0 33333 444444444444444444 6 66 0 4444444 5 999999999999 1 5 1 77 8888888 5 5 4444 44 55 666666 55 5 5 5 99 6 8 8 444 0 3 6666666 888 0 33 33 0 0 1 6 7 3 3 777 3 0 444444 33 3 0 3 0 3 3 2 2 444 88 1 0 00000 222222222 0 0 0 8 4 0 11 0 3 8 11 444 11 3 0 1 1111 3 5 44 111 99999999 6 7 000 99 3 5 0 11 0 0 0 1 0 1 0 6 7 3333333333 2 7 11111111 3 6666 2 777 3 3 6 6 1 6 3 3 88 7 3 4444 5 22 88 5 5 5 1 5 6 3 3 2 66 3 3 0 0 0 0 777 0 0 55555 0 1111 33 0 88 5 5 5 5 5 5 7 3 99 6 88 3 88 0 0 55 0 33 3 3 6 888888888888
lowQualScore : .. . ...... .. .. . . .. . ..... .................. . .. . ....... . ............ . . . .. ....... . . .... .. .. ...... .. . . . .. . . . ... . . ....... ... . .. .. . . . . . . . ... . . ...... .. . . . . . . . . ... .. . . ..... ......... . . . . . . .. . . . .. ... .. . . . .... . . .. ... ........ . . ... .. . . . .. . . . . . . . . . .......... . . ........ . .... . ... . . . . . . . . .. . . .... . .. .. . . . . . . . . . .. . . . . . . ... . . ..... . .... .. . .. . . . . . . . . .. . .. . .. . . .. . .. . . . ............
lowQualScore : 33 3 777777 00 33 0 0 00 8 00000 555555555555555555 7 00 1 3333333 7 666666666666 7 7 0 99 6666666 7 7 6666 44 99 444444 99 7 7 7 22 7 0 0 000 8 2 0000000 222 0 88 88 0 7 0 7 3 2 2 555 2 0 888888 88 2 0 2 2 2 2 8 5 000 22 4 8 00000 000000000 8 8 6 0 6 0 00 8 8 0 00 222 44 2 8 0 6666 2 7 00 777 77777777 7 3 000 00 2 6 6 22 0 8 0 0 0 0 0 5 3 7777777777 0 3 33333333 3 0000 0 777 3 3 7 7 0 7 3 3 33 3 3 5555 5 00 00 5 5 0 0 0 7 3 2 5 55 2 2 2 0 0 0 555 2 0 00000 2 2222 88 0 55 5 5 5 5 5 0 3 3 33 7 33 3 33 0 2 88 0 88 3 3 7 333333333333
consensus : AAATTAACAAGTTGGTTCT--GTA-CTTGAT-C----ATACAC-AGTGTG--AAAGATT-TNTAAAA--AAATTAA--A--CAA--A------TCTN-T---TTG-TAGACAAAATAN-TTCATGTACAAT-TCT---GAGA-ATTGTAACA-TTTTGNTT--ATAAC-------TAAGATTA-TT-GTC-GCCATACAAAATAAGTTCTAAAGATAAA-GGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--TTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-TTTTCTCTAAGAAAGCGCTTAAATAAATCAGCATTANGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAA-TTTTTAGGTTTAAT--G--ATATATACTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTAATGG-AACGTTAAATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCGAAG-TTAAGTCCTTGCAAATATTGGGG--CTTTAATCCATG-AACTATTTT-GTA---GAACANCGA----C-AAGTTTTA-TGAATTTT--CCTTCTTATTGGCTAAGGT-ATCCCATCC-AANTCA-TTATANAG-TGTCGATCTTGATGAATTTA---CCATTA-AAACTCGAAGAT--TA-C--GTGCTGCTGC-TATCTG-AACATCCTTCACATTAA-ATTAGCA-TCTCTTTCTGTACAATTGTCCCAAACAANATTTGAATATTCCAAAGATGGG-TCGAACAT-AAGAAAAATAA--TTTTATCAATGAATCCCTTTTAAGTTGA-TACTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATNNGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATNAGTGTCAACATTTGGAATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAACTG-TTTTGATTGGATT-AAAT-TCA---ACTGCCCATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGACTATACTATAAAGAGAAAGTAATCCAATCTGCAAAGAGTCTT-AAGGATTTTCT--ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAAG-AAAAGAAAGGGTCCTAAAACTGACCCTTGA-GGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
Reference ( family-2021 ) : AAATTAACAAGTTGGTTCT--GTA-CTTGAT-C----ATACAC-AGTGTG--AAAGATT-TTTAAAA--AAATTAA--A--CAA--A------TCTN-T---TTG-TAGACAAAATANATTCATGTACAAT-TCT---GAGA-ATTGTAACA-TTTTGNTT--ATAAC-------TAAGATTA-TT-GTC-GCCATACAAAATAAGTTCTAAAGATAAA-GGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--NTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-TTTTCTCTAAGAAAGCGCTTAAATAAATCAGCATTANGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAA-TTTTTAGGTTTAAT--G--ATATATACTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTAATGG-AACGTTAAATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCGAAG-TTAAGTCCTTGCAAATATTGGGG--CTTTAATCCATG-AACTATTTT-GTA---GAACANCGA----C-AAGTTTTA-TGAATTTT--CCTTCTTATTGGCTAAGGT-ATCCCATCC-AANTCA-TTATANAG-TGTCGATCTTGATGAATTTA---CCATTA-AAACTCGAAGAT--TA-T--GTGCTGCTGC-TATCCG-AACATCCTTCACATTAA-ATTAGCA-TCTCTTTCTGTACAATT-TCCCAAACAANATTTGAATATTCCAAAGATGGGGTCGAACAT-AAGAAAAATAA--TTTTATCAATGAATCCCTTTTAAGTTGA-TACTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATNNGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATNAGTGTCAACATTTGGAATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAACTG-TTTTGATTGGATT-AAAT-TCA---ACTGCCCATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGACTATACTATAAAGAGAAAGTAATCCAATCTGCAAAGAGTCTT-AAGGATTTTCTA-ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAAG-AAAAGAAAGGGTCCTAAAACTGACCCTTGA-GGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
gi|1 : AAATCATCAAGTTGGTTCT--GTA-CTTGATAC----ATATACTAGTGTG--AAAGATT-TAAAAAA--AAAATAA--A--CAA--A------TCTA-T---TTG-TAGACAAAATATATTTATGTACAAT-TCT---GAAA-ATTGTAACA-TTTTGTTC--ATAAC-------TAAGAATA-TT-GTC-ACCATACAAAATAAGTTCTAAAGATAAA-GGTAA------TTGTA-ATTGTAG-ATTATT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--ATTTAA-G--ACTA--TTCTAACAAAACTCACAATCAGGA-ATTTCTCTACGACAGTGCTTAAATAAATCAGCATTAAGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAACTTTTTAGGTTTAAT--GGAATATATTCTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGAGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTACTAG-AATGTTAACTTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATG-GGC-A--AAGTACATGGCCAAAGTTTAAGTCCTTGCAAATATTGGGA--CTTTAATCC-TGAAACTATTT---TA---GAACATCAA----CGAAGTTTTATTGAATTTTAACCTTCGTATT-GCTAAGGT-ATCCCATCC-AAGTCA-TTATTAAG-TGTCGATCTTGATGAATTTA---CCATTA-AAACTTGAAAAT--TA-TA-GTGCTGCTGCATAT-TG-AACAT-CTTCACATTAA-ATTAGCA-TCTCTTTCTGTACAATT-T-CCAAACAATATTTGAATATT-CAAAGATGGGGTCGAACAT-AAGAAAAATAAATTTTTATCAATGAATCCCTTTTAAGTTGATTTCTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTA-TGGATATGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCC-CAAG-TG-AGTATCAGTGTCAACATTTGGAATAACTGGTCCATGT-TGACCAAATTTTACCCTTGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAATTG-TTTTGATTGGATT-AAAT-TCA---ACTGCTCATTTATTA-GACCACTG-----ATGTATTATT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATG--TCA-TCA-TTGACTATACTATAAAGAG-AAGT-ATC--ATCTGCAAAGAGTCTTAAAGGATTTTCT--ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAGG-AAAAGAAAGAGTCCTAAAACAGACCCTTGA-GGAA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCACCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATCCA
gi|10 : AATTTGCAAAGAGTCAT-AAGGATTTTTTTTATGCCTA--TAGAGA-TGTCA--TTAATAAACAAAAGGAAAAGAAAGGGTCCTAAAACTAA-TCTTAATGGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAATACTACATGTACATGTACCTTAAAAGTTCTATCAGACAAATGATTTTCAATTCccaaacgtactctgtttggtaggacgggac
gi|11 : gaAAAA--AAATTAA--AAACAA--AGTTGGTTCTG-TAACTTGATAAACAAGTTGG-TTC-TGTACCTTGTTTAACGAGA-AATGAAAAAATTTTAAAG--AAAAA-------CAA-ATTA-TTTGTCAG--ATACAAAATAAGTTCT-AAGATAAA-GGTAA------TTGTACATTGTAGAATTGTTAAAAACTT-TGTATT-GTATATGTCTTTGTG--TA-AAAT
gi|12 : gaAA--A------TGTT-T---TTG-TAGGCAGAATGACTTCATGTATAAT-T-------------GCAATA-TTGTGCTTGCATAACATACACGTAAGATTC-TT-ATC-TCTATTCAAAATAAGTTCCAAGAATAAG-GTTAA------TGGCA-ATTACAA-ATTACT-TAAACTT-T
gi|13 : ACCAAATTTTACCCATGGATAAGAAAT-TTTTTTTCTACTAAAATCCATATTAGCTA-TTTTGATTGGATT-AAAT-TCA---ACTGCACATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGagattaa
gi|14 : --ATCCTGGTTTCTTAAAGAATAAGAGTTATGGGGC-A--AGGTACATGGCCAAAG--TAAGTCC-TGCA----------------AATCCATG-AACTATTTT-GTA---GAACA-CAACATGC-AAG-TTTA-TGAATTTT--CCTTTTTATT
gi|15 : TTAATCCATA-TTCTGTTTTTATA---AAATAT--A----C-AAGTTT-G-TGTATTTT--CCTT-TGAGTTGCTAGAAA-ATCCCACCCAAATTCA-TCACACAGCTGT--ATCT
gi|16 : ttattaaggtgtaaaT---TCCACGACTTTATGGTTGAATATATAAAGCTATAGTATTCATAAA---------TGAATTTGTTTTCTCCAATAG-AAAATTA
gi|17 : AACAAAAG-GAAAAAAAGCGTCGTAAAACTGACCCTTGA-GGGA--CTCtacatatactttgaga
gi|18 : attattattgtcACAAAACTCACAACCAGGA-TTTTCTCTAAGAAAGTGCTTAAATAA
gi|2 : TCGAT-GCCATAGTATTTAAAATAA-TTTTTAGGTTTACT--GT-ATATATACTTTTAATGGCACGCCTTGAAAGATACTATTGTAGGAAGACTTCGAATATTCAAGG-TAGGTCAT---TCCACAATTTTATAGTC-AAGGG-TAAAGC-----TATTTCTATA---------CGA-GTTGTTTTCACTAACGGGAATATTAAATTTTTAGAGTCAGTCCTGGTTTCTTAAAGAATAAG-GTTATGAGGCCA--AAGTACATGGCCGAAG-T-AAGTCCT-G-AAATTTTGGGGGACTT-AATCCATG-AACTATTT--GTAATTGAACAC--A----C-A-GTTTCA-TGAATTTTT-CCTTCTTATTG-CTAAGGTTATCCCATCC-AAGTCAGTTATAAAG-TGTCGATCTTGATGA-TTTA---CC-CTATAAACT-GAAGATATTAAC--GTGCTGCTGC-TATCTGGAACATCTTTCA-ATTAATATGAGCAATCTCTTTCTGTACAATTATCCCAAACAACATTTGAATATTCCAAAGATGGG-TCGAACATTAAGAAAAATAA--TTTTATCAATGA-TCCCTTTTAAGTTGA-TACTTAA----CATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATTGGATGTATT--GTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATGAGTGTCAACATTT-GAATAAAT-GTCCATTTGTGAAC-AATTTTACCCAT-GATAAAGAATA-TTTTTTCTACT-AAATCCATATTTAATGTTTTTGATTGGATTAAAATATCAATCACTGCCCCTTTATTAGGACCACTGATGATATGTATTCTTTTACTCAATTCATACATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGAC-ATACTATAAAGAGAAAGTAATCCAATC-GCAAAGAGTCTT-ATGGATTTTCTA-ATGT-TAGGTAGAGATTGTCAATTTAATAAACAATAG-AAAAGAAAGGGTCCTAAAACTG-CCATTGA-GGGAACTTCCTGAATTGGTTATATCTACGGGGTTGATGAAAAA-CATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
gi|3 : taAAATACATTCATGTACAAT-TCT---GAAA-ATTCTAACA-TTTTGTTT--ATAAC-------TGAGATTA-TT-GTC-ACCATACAAAATAAGTTCTAAAGATAAA-TGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACCT-TGTATCAGTATTTGTCTTTGTG--TA-TGATATTTTGGACACTTCA-G-A---AAA------------------------TCAA-G--ACTG--TTCTGACAAATCTCACAATCAGGATTTTTTTTTAAGAAAGCGTTTAAATAAATCAGCATTATGATTACTAGCTTTATTTCGCAATTGACAATGCAATACATTTGCTTTTCGATTGCC--AGT---TAAAATAA-GTTTTAGGTTTAATAGA--ATATATATTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAAACTTAGAATACTCAAGGATAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CAAAGTTGTTTTCACTACAGG-AATGTTAGATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCAAAG--TAATTCC-TGCAAATATTGAGG--ATTTAATCCATG-AACTATTTT-GTA---GAACAGC-A----C-AAG-TTTA-TGAATT
gi|4 : acaaaaaagtttaggtatggatatggAAATTAACAAGTTGGTTCTCTGTAACTTGAT-TCGATATACAC-AGTGTGGGAAAGATTGTTTAAAA--AAATTAA--A--CAA--A------TCTAAT---TTG-TNNNNNNNNNNNNNNNNNNNNNNNN-NNN---NNNN-NNNNNNNNN-NNNNNNNN--NNNNN-------NNNNNNNN-NN-NNN-NNNNNNNNNNNNNNNNNNNNNNNTTAAAAGGTAA------TTGTA-GTTGTAG-ATTATT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--TTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-acttta
gi|5 : gtaagaaatataaa--TTTTATCAATGAATCCCTTTTAAGTTGA-TAC
gi|5 : ATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTT--TCTACTAAAATCCATATTAACTG-TTTTGTTTGGATT-AAAT-TCA---ACTGCCCATTTATTA-AACCACTG-----ATGTATTTTT----TCAA--GAT-CATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattataaatggtccatgttgaccaaattttacccatggataagaaatatttttctactaaaatccatattaactgttttgtttggattaaattcaactgcccatttattaaaccactgatgtattttttcaagatcattagt
gi|6 : ttttatcaatgaatcccttttaagttgatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattTTTCGCAGTTGACAATG-AAT-TGTTTGCTTTACGATTTCCATAAT---TA-------TTTCAAGAATTGAT--G----------TTTTTATGGC-TAC-CTGA-------TAATGCTGGGAGACTTCTAAT-TTC-----TAG-TCATAAGTC----ATTTTATAGT------AATAAAAC-----TGTTCATATATGCTGGAGACGAAG-------CA--AATGG-AACATTAAACTTA-AGAGG--TTTCTTGTACCTTAGAGAATAAGAGTTCTGAGAT-AGAAAAAAAATGATTGACG-TGGATT--TTGTAAATATTGGGG--CGTTATTCTATA-TGCTATT
gi|7 : AAATTAACACGTTGGTTCT--GTA-CTTGAT--------ACA--AGTGTG--AAAGATT-TTTAAAA--A--TTAA--A--CAA--A------T------------------------------GTACAAT-TC--------------AACA-TTTTGTTT--ATAAC-------AGAGATTA-TT-GTC-ACCATACAAAATAAGTTCTAAAGATAAA-GGTAAAAATTTTTGTA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTGTTTGTCTTTGTG--TA-CAATATTTTGGACACATCA-GTATATATAAATTGGTTTATTGAGTGTGGGTTTTCAATGGTACTATTTTCTAACAA
gi|8 : aaaaa-AGCTATTTT-GTA---AAATAA-GA----T-AAGTTTT--TGAACTTT--TCTTCT-AGTGGCTAAAGT-ATTCCAGCCTAATTCA-TTATACAG-TGCTGATCTAGAAGAAGTTATTCTCATT-----CCCG-TGAT--TA-TTCTTGCAGCAGT-AACCTG-ACCATTCTC--TAGTAA-ATTGGCT-TCCCTTTCTGTACAATTGTCCCACACTGAATTTGCATACTCGAGAATTGGA--CGAATAA-CAGAAAAAttaac
gi|9 : T-TATAAGATGAAATTAATTA--CATGTA------TCTC-T---TTG-TATCCAAGATA-----------AAT-TCT----AGATATTGTAATG-TTTTGGCT--GTTAA-------TAAGATTGTTT-GTT-G----GCAAAATTAGTTT----GATCG-----AA------TTGCA---TGTA-----ATT-AAAACCTAAGAAGTAGTATTTGCCTTTGTGAATATTAATATTTTGGACACTTCATG-A---GAAAGATG-------A
Alignments
lowQualScore : 11 1 555555 22 11 1 11 11111 222222222222222222 22222222 222222222222 1111111 1111 111111 111 2222222 111 1 11 11 1 111 1 333333 1 1 111 22222 333333333 1 11 11 222 11 1111 11 111 33333333 111 11 11 1 2 1 1 222222222 1 44444444 1 1 1 22 1 1 11 1 1 11 1 2222 1 11 1 1 1 1 1 1 1 1 111 1 22222 2222 11 1 11 1 1 1 1 1 1 1 33 11 1 11 1 1 11 1 1 666666666666
lowQualScore : 88 3 333333 00 88 0 1 11 0 33333 444444444444444444 6 66 0 99999999 5 999999999999 1 5 1 77 8888888 5 5 4444 44 77 0 666666 55 5 5 5 99 6 8 8 444 0 3 6666666 777 0 33 33 0 0 1 6 7 3 3 777 3 0 444444 33 3 0 3 0 3 3 2 2 444 88 1 0 00000 222222222 0 0 0 8 4 0 11 0 3 8 11 444 11 3 0 1 1111 3 5 44 111 99999999 6 7 000 99 3 5 0 11 0 0 0 1 0 1 0 6 7 888888888 2 7 00000000 3 6 3 2 22 3 3 11 1 6 6 3 3 88 7 3 4444 5 22 88 5 5 5 1 5 6 3 3 2 66 3 3 0 0 0 0 777 0 0 55555 0 1111 33 0 88 5 5 5 5 5 5 7 3 11 6 88 3 88 0 0 55 0 33 3 3 6 888888888888
lowQualScore : .. . ...... .. .. . . .. . ..... .................. . .. . ........ . ............ . . . .. ....... . . .... .. .. . ...... .. . . . .. . . . ... . . ....... ... . .. .. . . . . . . . ... . . ...... .. . . . . . . . . ... .. . . ..... ......... . . . . . . .. . . . .. ... .. . . . .... . . .. ... ........ . . ... .. . . . .. . . . . . . . . . ......... . . ........ . . . . .. . . .. . . . . . .. . . .... . .. .. . . . . . . . . . .. . . . . . . ... . . ..... . .... .. . .. . . . . . . . . .. . .. . .. . . .. . .. . . . ............
lowQualScore : 33 3 777777 00 33 0 0 00 8 00000 555555555555555555 7 00 1 66666666 7 666666666666 7 7 0 99 6666666 7 7 6666 44 99 1 444444 99 7 7 7 22 7 0 0 000 8 2 0000000 222 0 88 88 0 7 0 7 3 2 2 555 2 0 888888 88 2 0 2 2 2 2 8 5 000 22 4 8 00000 000000000 8 8 6 0 6 0 00 8 8 0 00 222 44 2 8 0 6666 2 7 00 777 77777777 7 3 000 00 2 6 6 22 0 8 0 0 0 0 0 5 3 333333333 0 3 77777777 3 7 3 0 33 3 3 00 0 7 7 3 3 33 3 3 5555 5 00 00 5 5 0 0 0 7 3 2 5 55 2 2 2 0 0 0 555 2 0 00000 2 2222 88 0 55 5 5 5 5 5 0 3 3 77 7 33 3 33 0 2 88 0 88 3 3 7 333333333333
consensus : AAATTAACAAGTTGGTTCT--GTA-CTTGAT-C----ATACAC-AGTGTG--AAAGATT-TNTAAAA--AAATTAA--A--CAA--A------TCTN-T---TTG-TAGACAAAAT-AC-TTCATGTACAAT-TCT---GAGA-ATTGTAACA-TTTTGNTT--ATAAC-------TAAGATTA-TT-GTC-GCCATACAAAATAAGTTCTAAAGAT--AAAGGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--TTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-TTTTCTCTAAGAAAGCGCTTAAATAAATCAGCATTANGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAA-TTTTTAGGTTTAAT--G--ATATATACTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTAATGG-AACGTTAAATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCGAAG-TTAAGTCCTTGCAAATATTGGGG--CTTTAATCCATG-AACTATTTT-GTA---GAACANCGA----C-AAGTTTTA-TGAATTTT--CCTTCTTATTGGCTAAGGT-ATCCCATCC-AANTCA-TTATANAG-TGTCGATCTTGATGAATTTAC---CATTA-AAACTCGAAGAT--TA--C-GTGCTGCTGC-TATCTG-AACATCCTTCA-ATTAA-ATTAGCA-TCTCTTTCTGTACAATTGTCCCAAACAANATTTGAATATTCCAAAGAT-GGGTCGAACA-TAAGAAAAATAA--TTTTATCAATGAATCCCTTTTAAGTTGA-TACTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATNNGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATNAGTGTCAACATTTGGAATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAACTG-TTTTGATTGGATT-AAAT-TCA---ACTGCCCATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGACTATACTATAAAGAGAAAGTAATCCAATCTGCAAAGAGTCTT-AAGGATTTTCT--ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAAG-AAAAGAAAGGGTCCTAAAACTGACCCTTGA-GGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
Reference ( family-2021 ) : AAATTAACAAGTTGGTTCT--GTA-CTTGAT-C----ATACAC-AGTGTG--AAAGATT-TNTAAAA--AAATTAA--A--CAA--A------TCTN-T---TTG-TAGACAAAAT-AN-TTCATGTACAAT-TCT---GAGA-ATTGTAACA-TTTTGNTT--ATAAC-------TAAGATTA-TT-GTC-GCCATACAAAATAAGTTCTAAAGAT--AAAGGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--TTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-TTTTCTCTAAGAAAGCGCTTAAATAAATCAGCATTANGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAA-TTTTTAGGTTTAAT--G--ATATATACTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTAATGG-AACGTTAAATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCGAAG-TTAAGTCCTTGCAAATATTGGGG--CTTTAATCCATG-AACTATTTT-GTA---GAACANCGA----C-AAGTTTTA-TGAATTTT--CCTTCTTATTGGCTAAGGT-ATCCCATCC-AANTCA-TTATANAG-TGTCGATCTTGATGAATTTAC---CATTA-AAACTCGAAGAT--TA--C-GTGCTGCTGC-TATCTG-AACATCCTTCACATTAA-ATTAGCA-TCTCTTTCTGTACAATTGTCCCAAACAANATTTGAATATTCCAAAGAT-GGGTCGAACA-TAAGAAAAATAA--TTTTATCAATGAATCCCTTTTAAGTTGA-TACTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATNNGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATNAGTGTCAACATTTGGAATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAACTG-TTTTGATTGGATT-AAAT-TCA---ACTGCCCATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGACTATACTATAAAGAGAAAGTAATCCAATCTGCAAAGAGTCTT-AAGGATTTTCT--ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAAG-AAAAGAAAGGGTCCTAAAACTGACCCTTGA-GGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
gi|1 : AAATCATCAAGTTGGTTCT--GTA-CTTGATAC----ATATACTAGTGTG--AAAGATT-TAAAAAA--AAAATAA--A--CAA--A------TCTA-T---TTG-TAGACAAAAT-ATATTTATGTACAAT-TCT---GAAA-ATTGTAACA-TTTTGTTC--ATAAC-------TAAGAATA-TT-GTC-ACCATACAAAATAAGTTCTAAAGAT--AAAGGTAA------TTGTA-ATTGTAG-ATTATT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--ATTTAA-G--ACTA--TTCTAACAAAACTCACAATCAGGA-ATTTCTCTACGACAGTGCTTAAATAAATCAGCATTAAGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAACTTTTTAGGTTTAAT--GGAATATATTCTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGAGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTACTAG-AATGTTAACTTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATG-GGC-A--AAGTACATGGCCAAAGTTTAAGTCCTTGCAAATATTGGGA--CTTTAATCC-TGAAACTATTT---TA---GAACATCAA----CGAAGTTTTATTGAATTTTAACCTTCGTATT-GCTAAGGT-ATCCCATCC-AAGTCA-TTATTAAG-TGTCGATCTTGATGAATTTAC---CATTA-AAACTTGAAAAT--TA--TAGTGCTGCTGCATAT-TG-AACAT-CTTCACATTAA-ATTAGCA-TCTCTTTCTGTACAAT--TTCCAAACAATATTTGAATATT-CAAAGATGGGGTCGAACA-TAAGAAAAATAAATTTTTATCAATGAATCCCTTTTAAGTTGATTTCTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTA-TGGATATGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCC-CAAG-TG-AGTATCAGTGTCAACATTTGGAATAACTGGTCCATGT-TGACCAAATTTTACCCTTGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAATTG-TTTTGATTGGATT-AAAT-TCA---ACTGCTCATTTATTA-GACCACTG-----ATGTATTATT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATG--TCA-TCA-TTGACTATACTATAAAGAG-AAGT-ATC--ATCTGCAAAGAGTCTTAAAGGATTTTCT--ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAGG-AAAAGAAAGAGTCCTAAAACAGACCCTTGA-GGAA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCACCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATCCA
gi|10 : AATTTGCAAAGAGTCAT-AAGGATTTTTTTTATGCCTA--TAGAGA-TGTCA--TTAATAAACAAAAGGAAAAGAAAGGGTCCTAAAACTAA-TCTTAATGGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAATACTACATGTACATGTACCTTAAAAGTTCTATCAGACAAATGATTTTCAATTCccaaacgtactctgtttggtaggacgggac
gi|11 : gaAAAA--AAATTAA--AAACAA--AGTTGGTTCTG-TAACTTGATAAACAAGTT-GG-TTC-TGTACCTTGTTTAACGAGA-AATGAAAAAATTTTAAAG--AAAAA-------CAA-ATTA-TTTGTCAG--ATACAAAATAAGTTCT-AAGAT--AAAGGTAA------TTGTACATTGTAGAATTGTTAAAAACTT-TGTATT-GTATATGTCTTTGTG--TA-AAAT
gi|12 : gaAA--A------TGTT-T---TTG-TAGGCAGAATGAC-TTCATGTATAAT-T-------------GCAATA-TTGTGCTTGCATAACATACACGTAAGATTC-TT-ATC-TCTATTCAAAATAAGTTCCAAGAAT--AAGGTTAA------TGGCA-ATTACAA-ATTACT-TAAACTT-T
gi|13 : ACCAAATTTTACCCATGGATAAGAAAT-TTTTTTTCTACTAAAATCCATATTAGCTA-TTTTGATTGGATT-AAAT-TCA---ACTGCACATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGagattaa
gi|14 : --ATCCTGGTTTCTTAAAGAATAAGAGTTATGGGGC-A--AGGTACATGGCCAAAG--TAAGTCC-TGCA----------------AATCCATG-AACTATTTT-GTA---GAACA-CAACATGC-AAG-TTTA-TGAATTTT--CCTTTTTATT
gi|15 : TTAATCCATA-TTCTGTTTTTATA---AAATAT--A----C-AAGTTT-G-TGTATTTT--CCTT-TGAGTTGCTAGAAA-ATCCCACCCAAATTCA-TCACACAGCTGT--ATCT
gi|16 : ttattaaggtgtaaaT---TCCACGACTTTATGGTTGAATATATAAAGCTATAGTATTCATAAA---------TGAATTTGTTTTCTCCAATAG-AAAATTA
gi|17 : AACAAAAG-GAAAAAAAGCGTCGTAAAACTGACCCTTGA-GGGA--CTCtacatatactttgaga
gi|18 : attattattgtcACAAAACTCACAACCAGGA-TTTTCTCTAAGAAAGTGCTTAAATAA
gi|2 : TCGAT-GCCATAGTATTTAAAATAA-TTTTTAGGTTTACT--GT-ATATATACTTTTAATGGCACGCCTTGAAAGATACTATTGTAGGAAGACTTCGAATATTCAAGG-TAGGTCAT---TCCACAATTTTATAGTC-AAGGG-TAAAGC-----TATTTCTATA---------CGA-GTTGTTTTCACTAACGGGAATATTAAATTTTTAGAGTCAGTCCTGGTTTCTTAAAGAATAAG-GTTATGAGGCCA--AAGTACATGGCCGAAG-T-AAGTCCT-G-AAATTTTGGGGGACTT-AATCCATG-AACTATTT--GTAATTGAACAC--A----C-A-GTTTCA-TGAATTTTT-CCTTCTTATTG-CTAAGGTTATCCCATCC-AAGTCAGTTATAAAG-TGTCGATCTTGATGA-TTTAC---C-CTATAAACT-GAAGATATTAA-C-GTGCTGCTGC-TATCTGGAACATCTTTCA-ATTAATATGAGCAATCTCTTTCTGTACAATTATCCCAAACAACATTTGAATATTCCAAAGAT-GGGTCGAACATTAAGAAAAATAA--TTTTATCAATG-ATCCCTTTTAAGTTGA-TACT----TAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATTGGATGTATT--GTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATGAGTGTCAACATTT-GAATAAAT-GTCCATTTGTGAAC-AATTTTACCCAT-GATAAAGAATA-TTTTTTCTACT-AAATCCATATTTAATGTTTTTGATTGGATTAAAATATCAATCACTGCCCCTTTATTAGGACCACTGATGATATGTATTCTTTTACTCAATTCATACATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGAC-ATACTATAAAGAGAAAGTAATCCAATC-GCAAAGAGTCTT-ATGGATTTTCTA-ATGT-TAGGTAGAGATTGTCAATTTAATAAACAATAG-AAAAGAAAGGGTCCTAAAACTG-CCATTGA-GGGAACTTCCTGAATTGGTTATATCTACGGGGTTGATGAAAAA-CATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
gi|3 : taAAAT-ACATTCATGTACAAT-TCT---GAAA-ATTCTAACA-TTTTGTTT--ATAAC-------TGAGATTA-TT-GTC-ACCATACAAAATAAGTTCTAAAGAT--AAATGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACCT-TGTATCAGTATTTGTCTTTGTG--TA-TGATATTTTGGACACTTCA-G-A---AAA------------------------TCAA-G--ACTG--TTCTGACAAATCTCACAATCAGGATTTTTTTTTAAGAAAGCGTTTAAATAAATCAGCATTATGATTACTAGCTTTATTTCGCAATTGACAATGCAATACATTTGCTTTTCGATTGCC--AGT---TAAAATAA-GTTTTAGGTTTAATAGA--ATATATATTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAAACTTAGAATACTCAAGGATAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CAAAGTTGTTTTCACTACAGG-AATGTTAGATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCAAAG--TAATTCC-TGCAAATATTGAGG--ATTTAATCCATG-AACTATTTT-GTA---GAACAGC-A----C-AAG-TTTA-TGAATT
gi|4 : acaaaaaagtttaggtatggatatggAAATTAACAAGTTGGTTCTCTGTAACTTGAT-TCGATATACAC-AGTGTGGGAAAGATTGTTTAAAA--AAATTAA--A--CAA--A------TCTAAT---TTG-TNNNNNNNNN-NN-NNNNNNNNNNNN-NNN---NNNN-NNNNNNNNN-NNNNNNNN--NNNNN-------NNNNNNNN-NN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNTTAAAAGGTAA------TTGTA-GTTGTAG-ATTATT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--TTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-acttta
gi|5 : gtaagaaatataaa--TTTTATCAATGAATCCCTTTTAAGTTGA-TAC
gi|5 : ATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTT--TCTACTAAAATCCATATTAACTG-TTTTGTTTGGATT-AAAT-TCA---ACTGCCCATTTATTA-AACCACTG-----ATGTATTTTT----TCAA--GAT-CATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattataaatggtccatgttgaccaaattttacccatggataagaaatatttttctactaaaatccatattaactgttttgtttggattaaattcaactgcccatttattaaaccactgatgtattttttcaagatcattagt
gi|6 : ttttatcaatgaatcccttttaagttgatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattTTTCGCAGTTGACAATG-AAT-TGTTTGCTTTACGATTTCCATAAT---TA-------TTTCAAGAATTGAT--G----------TTTTTATGGC-TAC-CTGA-------TAATGCTGGGAGACTTCTAAT-TTC-----TAG-TCATAAGTC----ATTTTATAGT------AATAAAAC-----TGTTCATATATGCTGGAGACGAAG-------CA--AATGG-AACATTAAACTTA-AGAGG--TTTCTTGTACCTTAGAGAATAAGAGTTCTGAGAT-AGAAAAAAAATGATTGACG-TGGATT--TTGTAAATATTGGGG--CGTTATTCTATA-TGCTATT
gi|7 : AAATTAACACGTTGGTTCT--GTA-CTTGAT--------ACA--AGTGTG--AAAGATT-TTTAAAA--A--TTAA--A--CAA--A------T-------------------------------GTACAAT-TC--------------AACA-TTTTGTTT--ATAAC-------AGAGATTA-TT-GTC-ACCATACAAAATAAGTTCTAAAGAT--AAAGGTAAAAATTTTTGTA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTGTTTGTCTTTGTG--TA-CAATATTTTGGACACATCA-GTATATATAAATTGGTTTATTGAGTGTGGGTTTTCAATGGTACTATTTTCTAACAA
gi|8 : aaaaa-AGCTATTTT-GTA---AAATAA-GA----T-AAGTTTT--TGAACTTT--TCTTCT-AGTGGCTAAAGT-ATTCCAGCCTAATTCA-TTATACAG-TGCTGATCTAGAAGAAGTTATTCTCATT-----CCCGT-GAT--TATTC-TTGCAGCAGT-AACCTG-ACCATTCTCTAG--TAA-ATTGGCT-TCCCTTTCTGTACAATTGTCCCACACTGAATTTGCATACTCGAGA-AT-TGGACGAATA-ACAGAAAAAttaac
gi|9 : T-TATAAGATGAAATTAATTA--CATGTA------TCTC-T---TTG-TATCCAAGAT-A-----------AAT-TCT----AGATATTGTAATG-TTTTGGCT--GTTAA-------TAAGATTGTTT-GTT-G----GCAAAATTAGTTT----GAT--CG----AA------TTGCA---TGTA-----ATT-AAAACCTAAGAAGTAGTATTTGCCTTTGTGAATATTAATATTTTGGACACTTCATG-A---GAAAGATG-------A
Alignments
lowQualScore : 11 1 555555 22 11 1 11 11111 222222222222222222 22222222 222222222222 1111111 1111 111111 111 2222222 111 1 11 11 1 111 1 333333 1 1 111 22222 333333333 1 11 11 222 11 1111 11 111 33333333 111 11 11 1 2 1 1 222222222 1 44444444 1 1 1 1 1 1 11 1 1 11 1 2222 1 11 1 1 1 1 1 1 1 1 111 1 22222 2222 11 1 11 1 1 1 1 1 1 1 33 11 1 11 1 1 11 1 1 666666666666
lowQualScore : 88 3 333333 00 88 0 1 11 0 33333 444444444444444444 6 66 0 99999999 5 999999999999 1 5 1 77 8888888 5 5 4444 44 77 0 666666 55 5 5 5 99 6 8 8 444 0 3 6666666 777 0 33 33 0 0 1 6 7 3 3 777 3 0 444444 33 3 0 3 0 3 3 2 2 444 88 1 0 00000 222222222 0 0 0 8 4 0 11 0 3 8 11 444 11 3 0 1 1111 3 5 44 111 99999999 6 7 000 99 3 5 0 11 0 0 0 1 0 1 0 6 7 888888888 2 7 00000000 3 6 3 2 3 7 3 3 11 1 6 6 3 3 88 7 3 4444 5 22 88 5 5 5 1 5 6 3 3 2 66 3 3 0 0 0 0 777 0 0 55555 0 1111 33 0 88 5 5 5 5 5 5 7 3 11 6 88 3 88 0 0 55 0 33 3 3 6 888888888888
lowQualScore : .. . ...... .. .. . . .. . ..... .................. . .. . ........ . ............ . . . .. ....... . . .... .. .. . ...... .. . . . .. . . . ... . . ....... ... . .. .. . . . . . . . ... . . ...... .. . . . . . . . . ... .. . . ..... ......... . . . . . . .. . . . .. ... .. . . . .... . . .. ... ........ . . ... .. . . . .. . . . . . . . . . ......... . . ........ . . . . . . . . .. . . . . . .. . . .... . .. .. . . . . . . . . . .. . . . . . . ... . . ..... . .... .. . .. . . . . . . . . .. . .. . .. . . .. . .. . . . ............
lowQualScore : 33 3 777777 00 33 0 0 00 8 00000 555555555555555555 7 00 1 11111111 7 666666666666 7 7 0 99 6666666 7 7 6666 44 99 1 444444 99 7 7 7 22 7 0 0 000 8 2 0000000 222 0 88 88 0 7 0 7 3 2 2 555 2 0 888888 88 2 0 2 2 2 2 8 5 000 22 4 8 00000 000000000 8 8 6 0 6 0 00 8 8 0 00 222 44 2 8 0 6666 2 7 00 777 77777777 7 3 000 00 2 6 6 22 0 8 0 0 0 0 0 5 3 333333333 0 3 77777777 3 7 3 0 3 3 3 3 00 0 7 7 3 3 33 3 3 5555 5 00 00 5 5 0 0 0 7 3 2 5 55 2 2 2 0 0 0 555 2 0 00000 2 2222 88 0 55 5 5 5 5 5 0 3 3 77 7 33 3 33 0 2 88 0 88 3 3 7 333333333333
consensus : AAATTAACAAGTTGGTTCT--GTA-CTTGAT-C----ATACAC-AGTGTG--AAAGATT-TNTAAAA--AAATTAA--A--CAA--A------TCTN-T---TTG-TAGACAAAAT-AC-TTCATGTACAAT-TCT---GAGA-ATTGTAACA-TTTTGNTT--ATAAC-------TAAGATTA-TT-GTC-GCCATACAAAATAAGTTCTAAAGAT--AAAGGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--TTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-TTTTCTCTAAGAAAGCGCTTAAATAAATCAGCATTANGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAA-TTTTTAGGTTTAAT--G--ATATATACTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTAATGG-AACGTTAAATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCGAAG-TTAAGTCCTTGCAAATATTGGGG--CTTTAATCCATG-AACTATTTT-GTA---GAACANCGA----C-AAGTTTTA-TGAATTTT--CCTTCTTATTGGCTAAGGT-ATCCCATCC-AANTCA-TTATANAG-TGTCGATCTTGATGAATTTAC---CATTA-AAACTCGAAGAT--TA--C-GTGCTGCTGC-TATCTG-AACATCCTTCA-ATTAA-ATTAGCA-TCTCTTTCTGTACAATTGTCCCAAACAANATTTGAATATTCCAAAGAT-GGGTCGAACA-TAAGAAAAATAA--TTTTATCAATGAATCCCTTTTAAGTTGA-TACTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATNNGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATNAGTGTCAACATTTGGAATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAACTG-TTTTGATTGGATT-AAAT-TCA---ACTGCCCATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGACTATACTATAAAGAGAAAGTAATCCAATCTGCAAAGAGTCTT-AAGGATTTTCT--ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAAG-AAAAGAAAGGGTCCTAAAACTGACCCTTGA-GGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
Reference ( family-2021 ) : AAATTAACAAGTTGGTTCT--GTA-CTTGAT-C----ATACAC-AGTGTG--AAAGATT-TNTAAAA--AAATTAA--A--CAA--A------TCTN-T---TTG-TAGACAAAAT-AC-TTCATGTACAAT-TCT---GAGA-ATTGTAACA-TTTTGNTT--ATAAC-------TAAGATTA-TT-GTC-GCCATACAAAATAAGTTCTAAAGAT--AAAGGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--TTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-TTTTCTCTAAGAAAGCGCTTAAATAAATCAGCATTANGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAA-TTTTTAGGTTTAAT--G--ATATATACTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTAATGG-AACGTTAAATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCGAAG-TTAAGTCCTTGCAAATATTGGGG--CTTTAATCCATG-AACTATTTT-GTA---GAACANCGA----C-AAGTTTTA-TGAATTTT--CCTTCTTATTGGCTAAGGT-ATCCCATCC-AANTCA-TTATANAG-TGTCGATCTTGATGAATTTAC---CATTA-AAACTCGAAGAT--TA--C-GTGCTGCTGC-TATCTG-AACATCCTTCA-ATTAA-ATTAGCA-TCTCTTTCTGTACAATTGTCCCAAACAANATTTGAATATTCCAAAGAT-GGGTCGAACA-TAAGAAAAATAA--TTTTATCAATGAATCCCTTTTAAGTTGA-TACTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATNNGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATNAGTGTCAACATTTGGAATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAACTG-TTTTGATTGGATT-AAAT-TCA---ACTGCCCATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGACTATACTATAAAGAGAAAGTAATCCAATCTGCAAAGAGTCTT-AAGGATTTTCT--ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAAG-AAAAGAAAGGGTCCTAAAACTGACCCTTGA-GGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
gi|1 : AAATCATCAAGTTGGTTCT--GTA-CTTGATAC----ATATACTAGTGTG--AAAGATT-TAAAAAA--AAAATAA--A--CAA--A------TCTA-T---TTG-TAGACAAAAT-ATATTTATGTACAAT-TCT---GAAA-ATTGTAACA-TTTTGTTC--ATAAC-------TAAGAATA-TT-GTC-ACCATACAAAATAAGTTCTAAAGAT--AAAGGTAA------TTGTA-ATTGTAG-ATTATT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--ATTTAA-G--ACTA--TTCTAACAAAACTCACAATCAGGA-ATTTCTCTACGACAGTGCTTAAATAAATCAGCATTAAGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAACTTTTTAGGTTTAAT--GGAATATATTCTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGAGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTACTAG-AATGTTAACTTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATG-GGC-A--AAGTACATGGCCAAAGTTTAAGTCCTTGCAAATATTGGGA--CTTTAATCC-TGAAACTATTT---TA---GAACATCAA----CGAAGTTTTATTGAATTTTAACCTTCGTATT-GCTAAGGT-ATCCCATCC-AAGTCA-TTATTAAG-TGTCGATCTTGATGAATTTAC---CATTA-AAACTTGAAAAT--TA--TAGTGCTGCTGCATAT-TG-AACAT-CTTCACATTAA-ATTAGCA-TCTCTTTCTGTACAAT--TTCCAAACAATATTTGAATATT-CAAAGATGGGGTCGAACA-TAAGAAAAATAAATTTTTATCAATGAATCCCTTTTAAGTTGATTTCTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTA-TGGATATGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCC-CAAG-TG-AGTATCAGTGTCAACATTTGGAATAACTGGTCCATGT-TGACCAAATTTTACCCTTGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAATTG-TTTTGATTGGATT-AAAT-TCA---ACTGCTCATTTATTA-GACCACTG-----ATGTATTATT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATG--TCA-TCA-TTGACTATACTATAAAGAG-AAGT-ATC--ATCTGCAAAGAGTCTTAAAGGATTTTCT--ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAGG-AAAAGAAAGAGTCCTAAAACAGACCCTTGA-GGAA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCACCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATCCA
gi|10 : AATTTGCAAAGAGTCAT-AAGGATTTTTTTTATGCCTA--TAGAGA-TGTCA--TTAATAAACAAAAGGAAAAGAAAGGGTCCTAAAACTAA-TCTTAATGGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAATACTACATGTACATGTACCTTAAAAGTTCTATCAGACAAATGATTTTCAATTCccaaacgtactctgtttggtaggacgggac
gi|11 : gaAAAA--AAATTAA--AAACAA--AGTTGGTTCTG-TAACTTGATAAACAAGTT-GG-TTC-TGTACCTTGTTTAACGAGA-AATGAAAAAATTTTAAAG--AAAAA-------CAA-ATTA-TTTGTCAG--ATACAAAATAAGTTCT-AAGAT--AAAGGTAA------TTGTACATTGTAGAATTGTTAAAAACTT-TGTATT-GTATATGTCTTTGTG--TA-AAAT
gi|12 : gaAA--A------TGTT-T---TTG-TAGGCAGAATGAC-TTCATGTATAAT-T-------------GCAATA-TTGTGCTTGCATAACATACACGTAAGATTC-TT-ATC-TCTATTCAAAATAAGTTCCAAGAAT--AAGGTTAA------TGGCA-ATTACAA-ATTACT-TAAACTT-T
gi|13 : ACCAAATTTTACCCATGGATAAGAAAT-TTTTTTTCTACTAAAATCCATATTAGCTA-TTTTGATTGGATT-AAAT-TCA---ACTGCACATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGagattaa
gi|14 : --ATCCTGGTTTCTTAAAGAATAAGAGTTATGGGGC-A--AGGTACATGGCCAAAG--TAAGTCC-TGCA----------------AATCCATG-AACTATTTT-GTA---GAACA-CAACATGC-AAG-TTTA-TGAATTTT--CCTTTTTATT
gi|15 : TTAATCCATA-TTCTGTTTTTATA---AAATAT--A----C-AAGTTT-G-TGTATTTT--CCTT-TGAGTTGCTAGAAA-ATCCCACCCAAATTCA-TCACACAGCTGT--ATCT
gi|16 : ttattaaggtgtaaaT---TCCACGACTTTATGGTTGAATATATAAAGCTATAGTATTCATAAA---------TGAATTTGTTTTCTCCAATAG-AAAATTA
gi|17 : AACAAAAG-GAAAAAAAGCGTCGTAAAACTGACCCTTGA-GGGA--CTCtacatatactttgaga
gi|18 : attattattgtcACAAAACTCACAACCAGGA-TTTTCTCTAAGAAAGTGCTTAAATAA
gi|2 : TCGAT-GCCATAGTATTTAAAATAA-TTTTTAGGTTTACT--GT-ATATATACTTTTAATGGCACGCCTTGAAAGATACTATTGTAGGAAGACTTCGAATATTCAAGG-TAGGTCAT---TCCACAATTTTATAGTC-AAGGG-TAAAGC-----TATTTCTATA---------CGA-GTTGTTTTCACTAACGGGAATATTAAATTTTTAGAGTCAGTCCTGGTTTCTTAAAGAATAAG-GTTATGAGGCCA--AAGTACATGGCCGAAG-T-AAGTCCT-G-AAATTTTGGGGGACTT-AATCCATG-AACTATTT--GTAATTGAACAC--A----C-A-GTTTCA-TGAATTTTT-CCTTCTTATTG-CTAAGGTTATCCCATCC-AAGTCAGTTATAAAG-TGTCGATCTTGATGA-TTTAC---C-CTATAAACT-GAAGATATTAA-C-GTGCTGCTGC-TATCTGGAACATCTTTCA-ATTAATATGAGCAATCTCTTTCTGTACAATTATCCCAAACAACATTTGAATATTCCAAAGAT-GGGTCGAACATTAAGAAAAATAA--TTTTATCAATG-ATCCCTTTTAAGTTGA-TACT----TAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATTGGATGTATT--GTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATGAGTGTCAACATTT-GAATAAAT-GTCCATTTGTGAAC-AATTTTACCCAT-GATAAAGAATA-TTTTTTCTACT-AAATCCATATTTAATGTTTTTGATTGGATTAAAATATCAATCACTGCCCCTTTATTAGGACCACTGATGATATGTATTCTTTTACTCAATTCATACATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGAC-ATACTATAAAGAGAAAGTAATCCAATC-GCAAAGAGTCTT-ATGGATTTTCTA-ATGT-TAGGTAGAGATTGTCAATTTAATAAACAATAG-AAAAGAAAGGGTCCTAAAACTG-CCATTGA-GGGAACTTCCTGAATTGGTTATATCTACGGGGTTGATGAAAAA-CATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
gi|3 : taAAAT-ACATTCATGTACAAT-TCT---GAAA-ATTCTAACA-TTTTGTTT--ATAAC-------TGAGATTA-TT-GTC-ACCATACAAAATAAGTTCTAAAGAT--AAATGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACCT-TGTATCAGTATTTGTCTTTGTG--TA-TGATATTTTGGACACTTCA-G-A---AAA------------------------TCAA-G--ACTG--TTCTGACAAATCTCACAATCAGGATTTTTTTTTAAGAAAGCGTTTAAATAAATCAGCATTATGATTACTAGCTTTATTTCGCAATTGACAATGCAATACATTTGCTTTTCGATTGCC--AGT---TAAAATAA-GTTTTAGGTTTAATAGA--ATATATATTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAAACTTAGAATACTCAAGGATAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CAAAGTTGTTTTCACTACAGG-AATGTTAGATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCAAAG--TAATTCC-TGCAAATATTGAGG--ATTTAATCCATG-AACTATTTT-GTA---GAACAGC-A----C-AAG-TTTA-TGAATT
gi|4 : acaaaaaagtttaggtatggatatggAAATTAACAAGTTGGTTCTCTGTAACTTGAT-TCGATATACAC-AGTGTGGGAAAGATTGTTTAAAA--AAATTAA--A--CAA--A------TCTAAT---TTG-TNNNNNNNNN-NN-NNNNNNNNNNNN-NNN---NNNN-NNNNNNNNN-NNNNNNNN--NNNNN-------NNNNNNNN-NN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNTTAAAAGGTAA------TTGTA-GTTGTAG-ATTATT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--TTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-acttta
gi|5 : gtaagaaatataaa--TTTTATCAATGAATCCCTTTTAAGTTGA-TAC
gi|5 : ATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTT--TCTACTAAAATCCATATTAACTG-TTTTGTTTGGATT-AAAT-TCA---ACTGCCCATTTATTA-AACCACTG-----ATGTATTTTT----TCAA--GAT-CATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattataaatggtccatgttgaccaaattttacccatggataagaaatatttttctactaaaatccatattaactgttttgtttggattaaattcaactgcccatttattaaaccactgatgtattttttcaagatcattagt
gi|6 : ttttatcaatgaatcccttttaagttgatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattTTTCGCAGTTGACAATG-AAT-TGTTTGCTTTACGATTTCCATAAT---TA-------TTTCAAGAATTGAT--G----------TTTTTATGGC-TAC-CTGA-------TAATGCTGGGAGACTTCTAAT-TTC-----TAG-TCATAAGTC----ATTTTATAGT------AATAAAAC-----TGTTCATATATGCTGGAGACGAAG-------CA--AATGG-AACATTAAACTTA-AGAGG--TTTCTTGTACCTTAGAGAATAAGAGTTCTGAGAT-AGAAAAAAAATGATTGACG-TGGATT--TTGTAAATATTGGGG--CGTTATTCTATA-TGCTATT
gi|7 : AAATTAACACGTTGGTTCT--GTA-CTTGAT--------ACA--AGTGTG--AAAGATT-TTTAAAA--A--TTAA--A--CAA--A------T-------------------------------GTACAAT-TC--------------AACA-TTTTGTTT--ATAAC-------AGAGATTA-TT-GTC-ACCATACAAAATAAGTTCTAAAGAT--AAAGGTAAAAATTTTTGTA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTGTTTGTCTTTGTG--TA-CAATATTTTGGACACATCA-GTATATATAAATTGGTTTATTGAGTGTGGGTTTTCAATGGTACTATTTTCTAACAA
gi|8 : aaaaa-AGCTATTTT-GTA---AAATAA-GA----T-AAGTTTT--TGAACTTT--TCTTCT-AGTGGCTAAAGT-ATTCCAGCCTAATTCA-TTATACAG-TGCTGATCTAGAAGAAGTTATTCTCATT-----CCCGT-GAT--TATTC-TTGCAGCAGT-AACCTG-ACCATTCTCTA-GT-AA-ATTGGCT-TCCCTTTCTGTACAATTGTCCCACACTGAATTTGCATACTCGAGA-AT-TGGACGAATA-ACAGAAAAAttaac
gi|9 : T-TATAAGATGAAATTAATTA--CATGTA------TCTC-T---TTG-TATCCAAGAT-A-----------AAT-TCT----AGATATTGTAATG-TTTTGGCT--GTTAA-------TAAGATTGTTT-GTT-G----GCAAAATTAGTTT----GAT--CG----AA------TTGCA---TGTA-----ATT-AAAACCTAAGAAGTAGTATTTGCCTTTGTGAATATTAATATTTTGGACACTTCATG-A---GAAAGATG-------A
blockSeqs : CT A TCGAT C GG G T TG AAA AGTTGGTTCTGTAAC A AA GACTTCA G TTAACGAGAAA A A A GC ATACACG T T TCT CA TA AAATTT CA A A A AA T T T TAT G GTTTATT GTT T GT TT T T C A T A ATT A . AGAA AC A C A A A A G AAG TG A TATAG TGCTGGAGA G A T CA G C GA TG TT C T GACT T . TT ATT CAACATG . T TA T T T TG T A T G C C C A TCTCATT C A ATTAAC . C G C . T T A TA C C G . T . A . . T TG . T T C G . G G A G AT T A T A A ATC G ATGAT TTAC TT A AT T T . A A C T . TT C GG T AT G AC T AC T C C TACATGTACATG
blockSeqs : . . . . . . T . TTA GTATCTCT . GG ACATTCA . CTGAAAAT C . C . . . . ACC TA . . A . . . . . . . . T . T . . . . . . T A . A . GTA AT A . A A A . G . CG G . . . T . . A . . T T C A AT T . T . GCA . T CA . C G GG . T G . A . T . CCTAT . . TATTC . C . T . . . . TG A C . . . . . . . . A G T T A . . . . . . . . . . . A . . . . . A . . . . . .
blockSeqs : . A . A ATCTAAT . NN NNNNNN . NNNNNNNN T . T . . . . NNN NN . . A . . . . . . . . A . . . . . . . . . . . G . . . . . . . . . C G . . . T . . A . . T T T A CG T . T . AGA . T TA . C T G . . T . C . . . . A . . . . . . . . . . . . C . .
blockSeqs : . A ATGTTT . TC GGTTC . CTAGATAT N . N . . . . ACC TA . . G . . . . . . . . . . . . . . . . C . A . . T T . . . . . T . TA . . G . . .
blockSeqs : AT . . A . C T . T . . . . AG T . . A . . . . . . . . . CA . . T
blockSeqs : . . . . . G . . . . G . . . . . . . .
blockSeqCons : T** T* T* GCA***** TA* **
originalCons : AAATTAACAAGTTGGTTCT--GTA-CTTGAT-C----ATACAC-AGTGTG--AAAGATT-TNTAAAA--AAATTAA--A--CAA--A------TCTN-T---TTG-TAGACAAAAT-AC-TTCATGTACAAT-TCT---GAGA-ATTGTAACA-TTTTGNTT--ATAAC-------TAAGATTA-TT-GTC-GCCATACAAAATAAGTTCTAAAGAT--AAAGGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--TTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-TTTTCTCTAAGAAAGCGCTTAAATAAATCAGCATTANGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAA-TTTTTAGGTTTAAT--G--ATATATACTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTAATGG-AACGTTAAATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCGAAG-TTAAGTCCTTGCAAATATTGGGG--CTTTAATCCATG-AACTATTTT-GTA---GAACANCGA----C-AAGTTTTA-TGAATTTT--CCTTCTTATTGGCTAAGGT-ATCCCATCC-AANTCA-TTATANAG-TGTCGATCTTGATGAATTTAC---CATTA-AAACTCGAAGAT--TA--C-GTGCTGCTGC-TATCTG-AACATCCTTCA-ATTAA-ATTAGCA-TCTCTTTCTGTACAATTGTCCCAAACAANATTTGAATATTCCAAAGAT-GGGTCGAACA-TAAGAAAAATAA--TTTTATCAATGAATCCCTTTTAAGTTGA-TACTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATNNGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATNAGTGTCAACATTTGGAATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAACTG-TTTTGATTGGATT-AAAT-TCA---ACTGCCCATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGACTATACTATAAAGAGAAAGTAATCCAATCTGCAAAGAGTCTT-AAGGATTTTCT--ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAAG-AAAAGAAAGGGTCCTAAAACTGACCCTTGA-GGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
finalCons : AAATTAACAAGTTGGTTCT--GTA-CTTGAT-C----ATACAC-AGTGTG--AAAGATT-TNTAAAA--AAATTAA--A--CAA--A------TCTN-T---TTG-TAGACAAAAT-AC-TTCATGTACAAT-TCT---GAGA-ATTGTAACA-TTTTGNTT--ATAAC-------TAAGATTA-TT-GTC-GCCATACAAAATAAGTTCTAAAGAT--AAAGGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--TTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-TTTTCTCTAAGAAAGCGCTTAAATAAATCAGCATTANGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAA-TTTTTAGGTTTAAT--G--ATATATACTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTAATGG-AACGTTAAATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCGAAGT--AAGTCCT-GCAAATATTGGGG--CTTTAATCCATG-AACTATTTT-GTA---GAACAGCA-----C-AAGTTTTA-TGAATTTT--CCTTCTTATTGGCTAAGGT-ATCCCATCC-AANTCA-TTATANAG-TGTCGATCTTGATGAATTTAC---CATTA-AAACTCGAAGAT--TA--C-GTGCTGCTGC-TATCTG-AACATCCTTCA-ATTAA-ATTAGCA-TCTCTTTCTGTACAATTGTCCCAAACAANATTTGAATATTCCAAAGAT-GGGTCGAACA-TAAGAAAAATAA--TTTTATCAATGAATCCCTTTTAAGTTGA-TACTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATNNGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATNAGTGTCAACATTTGGAATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAACTG-TTTTGATTGGATT-AAAT-TCA---ACTGCCCATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGACTATACTATAAAGAGAAAGTAATCCAATCTGCAAAGAGTCTT-AAGGATTTTCT--ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAAG-AAAAGAAAGGGTCCTAAAACTGACCCTTGA-GGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
Alignments
lowQualScore : 11 1 555555 22 11 1 11 11111 222222222222222222 22222222 222222222222 1111111 1111 111111 111 2222222 111 1 11 11 1 111 1 333333 1 1 111 22222 333333333 1 11 11 11 1111 11 111 111111 111 11 11 1 2 1 1 222222222 1 44444444 1 1 1 1 1 1 11 1 1 11 1 2222 1 11 1 1 1 1 1 1 1 1 111 1 22222 2222 11 1 11 1 1 1 1 1 1 1 33 11 1 11 1 1 11 1 1 666666666666
lowQualScore : 88 3 333333 00 88 0 1 11 0 33333 444444444444444444 6 66 0 99999999 5 999999999999 1 5 1 77 8888888 5 5 4444 44 77 0 666666 55 5 5 5 99 6 8 8 444 0 3 6666666 777 0 33 33 0 0 1 6 7 3 3 777 3 0 444444 33 3 0 3 0 3 3 2 2 444 88 1 0 00000 222222222 0 0 0 8 4 0 11 0 3 8 11 11 8 3 0 1 1111 3 5 44 111 99 999999 6 7 000 99 3 5 0 11 0 0 0 1 0 1 0 6 7 888888888 2 7 00000000 3 6 3 2 3 7 3 3 11 1 6 6 3 3 88 7 3 4444 5 22 88 5 5 5 1 5 6 3 3 2 66 3 3 0 0 0 0 777 0 0 55555 0 1111 33 0 88 5 5 5 5 5 5 7 3 11 6 88 3 88 0 0 55 0 33 3 3 6 888888888888
lowQualScore : .. . ...... .. .. . . .. . ..... .................. . .. . ........ . ............ . . . .. ....... . . .... .. .. . ...... .. . . . .. . . . ... . . ....... ... . .. .. . . . . . . . ... . . ...... .. . . . . . . . . ... .. . . ..... ......... . . . . . . .. . . . .. .. . . . . .... . . .. ... .. ...... . . ... .. . . . .. . . . . . . . . . ......... . . ........ . . . . . . . . .. . . . . . .. . . .... . .. .. . . . . . . . . . .. . . . . . . ... . . ..... . .... .. . .. . . . . . . . . .. . .. . .. . . .. . .. . . . ............
lowQualScore : 33 3 777777 00 33 0 0 00 8 00000 555555555555555555 7 00 1 11111111 7 666666666666 7 7 0 99 6666666 7 7 6666 44 99 1 444444 99 7 7 7 22 7 0 0 000 8 2 0000000 222 0 88 88 0 7 0 7 3 2 2 555 2 0 888888 88 2 0 2 2 2 2 8 5 000 22 4 8 00000 000000000 8 8 6 0 6 0 00 8 8 0 00 00 0 2 8 0 6666 2 7 00 777 22 888888 7 3 000 00 2 6 6 22 0 8 0 0 0 0 0 5 3 333333333 0 3 77777777 3 7 3 0 3 3 3 3 00 0 7 7 3 3 33 3 3 5555 5 00 00 5 5 0 0 0 7 3 2 5 55 2 2 2 0 0 0 555 2 0 00000 2 2222 88 0 55 5 5 5 5 5 0 3 3 77 7 33 3 33 0 2 88 0 88 3 3 7 333333333333
consensus : AAATTAACAAGTTGGTTCT--GTA-CTTGAT-C----ATACAC-AGTGTG--AAAGATT-TNTAAAA--AAATTAA--A--CAA--A------TCTN-T---TTG-TAGACAAAAT-AC-TTCATGTACAAT-TCT---GAGA-ATTGTAACA-TTTTGNTT--ATAAC-------TAAGATTA-TT-GTC-GCCATACAAAATAAGTTCTAAAGAT--AAAGGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--TTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-TTTTCTCTAAGAAAGCGCTTAAATAAATCAGCATTANGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAA-TTTTTAGGTTTAAT--G--ATATATACTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTAATGG-AACGTTAAATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCGAAG--TAAGTCC-TGCAAATATTGGGG--CTTTAATCCATG-AACTATTTT-GTA---GA--ACA-C-A--C-AAGTTTTA-TGAATTTT--CCTTCTTATTGGCTAAGGT-ATCCCATCC-AANTCA-TTATANAG-TGTCGATCTTGATGAATTTAC---CATTA-AAACTCGAAGAT--TA--C-GTGCTGCTGC-TATCTG-AACATCCTTCA-ATTAA-ATTAGCA-TCTCTTTCTGTACAATTGTCCCAAACAANATTTGAATATTCCAAAGAT-GGGTCGAACA-TAAGAAAAATAA--TTTTATCAATGAATCCCTTTTAAGTTGA-TACTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATNNGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATNAGTGTCAACATTTGGAATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAACTG-TTTTGATTGGATT-AAAT-TCA---ACTGCCCATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGACTATACTATAAAGAGAAAGTAATCCAATCTGCAAAGAGTCTT-AAGGATTTTCT--ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAAG-AAAAGAAAGGGTCCTAAAACTGACCCTTGA-GGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
Reference ( family-2021 ) : AAATTAACAAGTTGGTTCT--GTA-CTTGAT-C----ATACAC-AGTGTG--AAAGATT-TNTAAAA--AAATTAA--A--CAA--A------TCTN-T---TTG-TAGACAAAAT-AC-TTCATGTACAAT-TCT---GAGA-ATTGTAACA-TTTTGNTT--ATAAC-------TAAGATTA-TT-GTC-GCCATACAAAATAAGTTCTAAAGAT--AAAGGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--TTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-TTTTCTCTAAGAAAGCGCTTAAATAAATCAGCATTANGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAA-TTTTTAGGTTTAAT--G--ATATATACTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTAATGG-AACGTTAAATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCGAAG--TAAGTCC-TGCAAATATTGGGG--CTTTAATCCATG-AACTATTTT-GTA---GA--ACAGC-A--C-AAGTTTTA-TGAATTTT--CCTTCTTATTGGCTAAGGT-ATCCCATCC-AANTCA-TTATANAG-TGTCGATCTTGATGAATTTAC---CATTA-AAACTCGAAGAT--TA--C-GTGCTGCTGC-TATCTG-AACATCCTTCA-ATTAA-ATTAGCA-TCTCTTTCTGTACAATTGTCCCAAACAANATTTGAATATTCCAAAGAT-GGGTCGAACA-TAAGAAAAATAA--TTTTATCAATGAATCCCTTTTAAGTTGA-TACTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATNNGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATNAGTGTCAACATTTGGAATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAACTG-TTTTGATTGGATT-AAAT-TCA---ACTGCCCATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGACTATACTATAAAGAGAAAGTAATCCAATCTGCAAAGAGTCTT-AAGGATTTTCT--ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAAG-AAAAGAAAGGGTCCTAAAACTGACCCTTGA-GGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
gi|1 : AAATCATCAAGTTGGTTCT--GTA-CTTGATAC----ATATACTAGTGTG--AAAGATT-TAAAAAA--AAAATAA--A--CAA--A------TCTA-T---TTG-TAGACAAAAT-ATATTTATGTACAAT-TCT---GAAA-ATTGTAACA-TTTTGTTC--ATAAC-------TAAGAATA-TT-GTC-ACCATACAAAATAAGTTCTAAAGAT--AAAGGTAA------TTGTA-ATTGTAG-ATTATT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--ATTTAA-G--ACTA--TTCTAACAAAACTCACAATCAGGA-ATTTCTCTACGACAGTGCTTAAATAAATCAGCATTAAGATTACTAGCTTTATTTCGCAATTGACAATGCAATATATTTGCTTTTCGATTGCCATAGT---TAAAATAACTTTTTAGGTTTAAT--GGAATATATTCTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAGACTTCGAATATTCAAGGGTAGGTCAT---TCCACAATTTTATAGTCGAAGAGATAAAGC-----TATTCATATA---------CGAAGTTGTTTTCACTACTAG-AATGTTAACTTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATG-GGC-A--AAGTACATGGCCAAAGTTTAAGTCCTTGCAAATATTGGGA--CTTTAATCC-TGAAACTATTT---TA---GA--ACATCAA--CGAAGTTTTATTGAATTTTAACCTTCGTATT-GCTAAGGT-ATCCCATCC-AAGTCA-TTATTAAG-TGTCGATCTTGATGAATTTAC---CATTA-AAACTTGAAAAT--TA--TAGTGCTGCTGCATAT-TG-AACAT-CTTCACATTAA-ATTAGCA-TCTCTTTCTGTACAAT--TTCCAAACAATATTTGAATATT-CAAAGATGGGGTCGAACA-TAAGAAAAATAAATTTTTATCAATGAATCCCTTTTAAGTTGATTTCTTAAATAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTA-TGGATATGATGTATTTGGTTTTTCCAACATCCATCTCTCTGGAATATTATTCC-CAAG-TG-AGTATCAGTGTCAACATTTGGAATAACTGGTCCATGT-TGACCAAATTTTACCCTTGGATAAGAAATATTTTTTTCTACTAAAATCCATATTAATTG-TTTTGATTGGATT-AAAT-TCA---ACTGCTCATTTATTA-GACCACTG-----ATGTATTATT----TCAA--GAT-CATTAGTCAATGAATTTGCAGAATTGACAATG--TCA-TCA-TTGACTATACTATAAAGAG-AAGT-ATC--ATCTGCAAAGAGTCTTAAAGGATTTTCT--ATGTCTA--TAGAGA-TGTCA--TTAATAAACAAAGG-AAAAGAAAGAGTCCTAAAACAGACCCTTGA-GGAA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCACCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATCCA
gi|10 : AATTTGCAAAGAGTCAT-AAGGATTTTTTTTATGCCTA--TAGAGA-TGTCA--TTAATAAACAAAAGGAAAAGAAAGGGTCCTAAAACTAA-TCTTAATGGGA--CTCCTGAATTGG-TATGTCTA-GGGGTTGATGAAAAACCATCCAATACTACATGTACATGTACCTTAAAAGTTCTATCAGACAAATGATTTTCAATTCccaaacgtactctgtttggtaggacgggac
gi|11 : gaAAAA--AAATTAA--AAACAA--AGTTGGTTCTG-TAACTTGATAAACAAGTT-GG-TTC-TGTACCTTGTTTAACGAGA-AATGAAAAAATTTTAAAG--AAAAA-------CAA-ATTA-TTTGTCAG--ATACAAAATAAGTTCT-AAGAT--AAAGGTAA------TTGTACATTGTAGAATTGTTAAAAACTT-TGTATT-GTATATGTCTTTGTG--TA-AAAT
gi|12 : gaAA--A------TGTT-T---TTG-TAGGCAGAATGAC-TTCATGTATAAT-T-------------GCAATA-TTGTGCTTGCATAACATACACGTAAGATTC-TT-ATC-TCTATTCAAAATAAGTTCCAAGAAT--AAGGTTAA------TGGCA-ATTACAA-ATTACT-TAAACTT-T
gi|13 : ACCAAATTTTACCCATGGATAAGAAAT-TTTTTTTCTACTAAAATCCATATTAGCTA-TTTTGATTGGATT-AAAT-TCA---ACTGCACATTTATTA-GACCACTG-----ATGTATTCTT----TCAA--GAT-CATTAGTCAATGAATTTGCAGagattaa
gi|14 : --ATCCTGGTTTCTTAAAGAATAAGAGTTATGGGGC-A--AGGTACATGGCCAAAG--TAAGTCC-TGCA----------------AATCCATG-AACTATTTT-GTA---GAACACAAC-ATGC-AAG-TTTA-TGAATTTT--CCTTTTTATT
gi|15 : TTAATCCATA-TTCTGTTTTTATA---AA--ATA-T-A--C-AAGTTT-G-TGTATTTT--CCTT-TGAGTTGCTAGAAA-ATCCCACCCAAATTCA-TCACACAGCTGT--ATCT
gi|16 : ttattaaggtgtaaaT---TCCACGACTTTATGGTTGAATATATAAAGCTATAGTATTCATAAA---------TGAATTTGTTTTCTCCAATAG-AAAATTA
gi|17 : AACAAAAG-GAAAAAAAGCGTCGTAAAACTGACCCTTGA-GGGA--CTCtacatatactttgaga
gi|18 : attattattgtcACAAAACTCACAACCAGGA-TTTTCTCTAAGAAAGTGCTTAAATAA
gi|2 : TCGAT-GCCATAGTATTTAAAATAA-TTTTTAGGTTTACT--GT-ATATATACTTTTAATGGCACGCCTTGAAAGATACTATTGTAGGAAGACTTCGAATATTCAAGG-TAGGTCAT---TCCACAATTTTATAGTC-AAGGG-TAAAGC-----TATTTCTATA---------CGA-GTTGTTTTCACTAACGGGAATATTAAATTTTTAGAGTCAGTCCTGGTTTCTTAAAGAATAAG-GTTATGAGGCCA--AAGTACATGGCCGAAG--TAAGTCC-TG-AAATTTTGGGGGACTT-AATCCATG-AACTATTT--GTAATTGA--ACA-C-A--C-A-GTTTCA-TGAATTTTT-CCTTCTTATTG-CTAAGGTTATCCCATCC-AAGTCAGTTATAAAG-TGTCGATCTTGATGA-TTTAC---C-CTATAAACT-GAAGATATTAA-C-GTGCTGCTGC-TATCTGGAACATCTTTCA-ATTAATATGAGCAATCTCTTTCTGTACAATTATCCCAAACAACATTTGAATATTCCAAAGAT-GGGTCGAACATTAAGAAAAATAA--TTTTATCAATG-ATCCCTTTTAAGTTGA-TACT----TAACATTCTTAAGACATTTAATCGTTGACATGCTTTGTTATTGGATTGGATGTATT--GTTTTTCCAACATCCATCTCTCTGGAATATTATTCCTCAAGTTGCAGTATGAGTGTCAACATTT-GAATAAAT-GTCCATTTGTGAAC-AATTTTACCCAT-GATAAAGAATA-TTTTTTCTACT-AAATCCATATTTAATGTTTTTGATTGGATTAAAATATCAATCACTGCCCCTTTATTAGGACCACTGATGATATGTATTCTTTTACTCAATTCATACATTAGTCAATGAATTTGCAGAATTGACAATGATCCATTCATTTGAC-ATACTATAAAGAGAAAGTAATCCAATC-GCAAAGAGTCTT-ATGGATTTTCTA-ATGT-TAGGTAGAGATTGTCAATTTAATAAACAATAG-AAAAGAAAGGGTCCTAAAACTG-CCATTGA-GGGAACTTCCTGAATTGGTTATATCTACGGGGTTGATGAAAAA-CATCCAACAC------------TACCTTTTGAGTTCTATCAGACAAATAATTTTCAATTCA
gi|3 : taAAAT-ACATTCATGTACAAT-TCT---GAAA-ATTCTAACA-TTTTGTTT--ATAAC-------TGAGATTA-TT-GTC-ACCATACAAAATAAGTTCTAAAGAT--AAATGTAA------TTGCA-ATTGTAG-ATTGTT-AAAACCT-TGTATCAGTATTTGTCTTTGTG--TA-TGATATTTTGGACACTTCA-G-A---AAA------------------------TCAA-G--ACTG--TTCTGACAAATCTCACAATCAGGATTTTTTTTTAAGAAAGCGTTTAAATAAATCAGCATTATGATTACTAGCTTTATTTCGCAATTGACAATGCAATACATTTGCTTTTCGATTGCC--AGT---TAAAATAA-GTTTTAGGTTTAATAGA--ATATATATTTTTAATGGCACAC-TTGAAAGATACTAGTGTAGGAAAACTTAGAATACTCAAGGATAGGTCAT---TCCACAATTTTATAGTCGAAGGGATAAAGC-----TATTCATATA---------CAAAGTTGTTTTCACTACAGG-AATGTTAGATTTT-AGAGT--ATCCTGGTTTCTTAAAGAATAAGAGTTATGAGGC-A--AAGTACATGGCCAAAG--TAATTCC-TGCAAATATTGAGG--ATTTAATCCATG-AACTATTTT-GTA---GA--ACAGC-A--C-AAG-TTTA-TGAATT
gi|4 : acaaaaaagtttaggtatggatatggAAATTAACAAGTTGGTTCTCTGTAACTTGAT-TCGATATACAC-AGTGTGGGAAAGATTGTTTAAAA--AAATTAA--A--CAA--A------TCTAAT---TTG-TNNNNNNNNN-NN-NNNNNNNNNNNN-NNN---NNNN-NNNNNNNNN-NNNNNNNN--NNNNN-------NNNNNNNN-NN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNTTAAAAGGTAA------TTGTA-GTTGTAG-ATTATT-AAAACTT-TGTATCAGTATTTGTCTTTGTG--TA-CAATATTTTGGACACTTCA-G-A---AAAAAGTG-------AAGTGTGG--TTTCAA-G--ACTA--TTCTGACAAAACTCACAATCAGGA-acttta
gi|5 : gtaagaaatataaa--TTTTATCAATGAATCCCTTTTAAGTTGA-TAC
gi|5 : ATAAATGGTCCATGT-TGACCAAATTTTACCCATGGATAAGAAATATTTT--TCTACTAAAATCCATATTAACTG-TTTTGTTTGGATT-AAAT-TCA---ACTGCCCATTTATTA-AACCACTG-----ATGTATTTTT----TCAA--GAT-CATTAGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattataaatggtccatgttgaccaaattttacccatggataagaaatatttttctactaaaatccatattaactgttttgtttggattaaattcaactgcccatttattaaaccactgatgtattttttcaagatcattagt
gi|6 : ttttatcaatgaatcccttttaagttgatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattTTTCGCAGTTGACAATG-AAT-TGTTTGCTTTACGATTTCCATAAT---TA-------TTTCAAGAATTGAT--G----------TTTTTATGGC-TAC-CTGA-------TAATGCTGGGAGACTTCTAAT-TTC-----TAG-TCATAAGTC----ATTTTATAGT------AATAAAAC-----TGTTCATATATGCTGGAGACGAAG-------CA--AATGG-AACATTAAACTTA-AGAGG--TTTCTTGTACCTTAGAGAATAAGAGTTCTGAGAT-AGAAAAAAAATGATTGACG--TGGATTT-TGTAAATATTGGGG--CGTTATTCTATA-TGCTATT
gi|7 : AAATTAACACGTTGGTTCT--GTA-CTTGAT--------ACA--AGTGTG--AAAGATT-TTTAAAA--A--TTAA--A--CAA--A------T-------------------------------GTACAAT-TC--------------AACA-TTTTGTTT--ATAAC-------AGAGATTA-TT-GTC-ACCATACAAAATAAGTTCTAAAGAT--AAAGGTAAAAATTTTTGTA-ATTGTAG-ATTGTT-AAAACTT-TGTATCAGTGTTTGTCTTTGTG--TA-CAATATTTTGGACACATCA-GTATATATAAATTGGTTTATTGAGTGTGGGTTTTCAATGGTACTATTTTCTAACAA
gi|8 : aaaaa-AGCTATTTT-GTA---AA--ATAAG-A--T-AAGTTTT--TGAACTTT--TCTTCT-AGTGGCTAAAGT-ATTCCAGCCTAATTCA-TTATACAG-TGCTGATCTAGAAGAAGTTATTCTCATT-----CCCGT-GAT--TATTC-TTGCAGCAGT-AACCTG-ACCATTCTCTA-GT-AA-ATTGGCT-TCCCTTTCTGTACAATTGTCCCACACTGAATTTGCATACTCGAGA-AT-TGGACGAATA-ACAGAAAAAttaac
gi|9 : T-TATAAGATGAAATTAATTA--CATGTA------TCTC-T---TTG-TATCCAAGAT-A-----------AAT-TCT----AGATATTGTAATG-TTTTGGCT--GTTAA-------TAAGATTGTTT-GTT-G----GCAAAATTAGTTT----GAT--CG----AA------TTGCA---TGTA-----ATT-AAAACCTAAGAAGTAGTATTTGCCTTTGTGAATATTAATATTTTGGACACTTCATG-A---GAAAGATG-------A