lowQualScore : 222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111 11111111111111111
lowQualScore : 33 222222 11 1 22 22222 33333 33 3333 1 111111 333 1 44444444444444 2 33 4444 2 33 888888888 1 22 3 2 1 3 3 1 1 444444444444444444444444444444444444444444444444444444444444444 1 2222 222222 444444444444 1 1111 1 5555 1 2 1 2 1 8888888888888888888888888888888888888888 2222 11 11 1 333333333 1 1 11 22 3 1111111 1 2 11 1 44444 333333 3 11 222222222 1 33333 1 11 11 22 33333333 3 1 222 3 333 2222222222 5555555555555555 2 222222222 33333 111111111111111111111111111111111111 11 11 222 3333 11111111111111111 111 5555555555555555555555555 1 22 1 66666666666666666 1 333333333 2222222222 3333 2 111 3333 222222222 11 22 11 11 1 2 2 1 1 11 1 222 222 1 2
lowQualScore : 88 5 5 000000 33 9 77 0 5 5 22 55555 0 22222 6 3 99 3333 3 5 5 777777 000 0 5 77 66 55555555555555 66 6 5 4 44 55 77 5 7777 0 1 44 6 666666666 0 0 0 8 0 11 2 8 4 3 6 2 0 0 1 0 0 0 1 0 333333333333333333333333333333333333333333333333333333333333333 0 3 2222 222222 000000000000 0 8888 3 0 4444 5 7 0 0 0 0 6666666666666666666666666666666666666666 3 2 3333 3 3 3 66 33 0 3 11 999999999 0 5 3 0 0 5 11 11 0 8 6666666 0 6 0 6 8 00 5 3 9 88888 6 777777 1 00 6 77 666666666 1 3 7 5 77777 3 6 1 3 88 5 22 00 6 77777777 1 3 555 77 5 4 888 5 5 5 5555555555 8888888888888888 8 1 9999 999999999 55555 8 333333333333333333333333333333333333 00 6 88 33 77 6 333 6 1111 8 33333333333333333 4 444 6666666666666666666666666 8 0 66 33 1 5 8 77777777777777777 0 0 4 1 0 111111111 8888888888 66 4444 0 0 7 55 666 777 6 1 1 3333 0 333333333 3 33 6 22 1 4 88 00 6 5 3 0 5 1 2 2 44 0 0 22 0 333 333 3 55 0
lowQualScore : .. . . ...... .. . .. . . . .. ..... . ..... . . .. .... . . . ...... ... . . .. .. .............. .. . . . .. .. .. . .... . . .. . ......... . . . . . .. . . . . . . . . . . . . . . ............................................................... . . .... ...... ............ . .... . . .... . . . . . . ........................................ . . .... . . . .. .. . . .. ......... . . . . . . .. .. . . ....... . . . . . .. . . . ..... . ...... . .. . .. ......... . . . . ..... . . . . .. . .. .. . ........ . . ... .. . . ... . . . .......... ................ . . .... ......... ..... . .................................... .. . .. .. .. . ... . .... . ................. . ... ......................... . . .. .. . . . ................. . . . . . ......... .......... .. .... . . . .. ... ... . . . .... . ......... . .. . .. . . .. .. . . . . . . . . .. . . .. . ... ... . .. .
lowQualScore : 11 7 7 999999 66 1 99 1 7 7 99 11111 7 44444 5 2 88 8888 9 0 0 999999 111 0 0 00 99 66666666666666 99 1 0 0 33 99 44 7 7777 3 0 55 7 777777777 0 8 8 0 8 22 0 0 0 0 0 8 2 0 8 0 8 8 0 6 888888888888888888888888888888888888888888888888888888888888888 0 2 2222 666666 888888888888 0 5555 2 0 2222 0 5 0 0 0 2 2222222222222222222222222222222222222222 2 5 2222 2 2 2 22 88 0 2 66 444444444 8 0 0 0 8 2 44 22 0 0 4444444 6 0 0 0 0 00 0 3 0 77777 7 000000 7 33 7 77 222222222 5 3 3 5 00000 3 5 0 5 88 0 00 22 7 55555555 7 3 000 77 7 3 666 7 7 7 0000000000 9999999999999999 6 0 8888 000000000 88888 0 222222222222222222222222222222222222 22 7 88 33 33 7 333 7 5555 0 66666666666666666 6 000 4444444444444444444444444 0 6 44 22 8 4 6 88888888888888888 8 0 8 4 8 444444444 4444444444 44 5555 8 8 5 88 222 666 7 7 0 8888 6 888888888 2 88 7 88 0 8 33 33 7 5 8 8 0 4 2 2 33 3 7 33 7 333 333 3 00 0
consensus : CTTTTGCCTATTTT--GCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGA-CAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-N-AAAATAAACGCAA--TTTTTGT-NTATTCCNTT-TTTTTCT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTATTT-ATCT--AAAA-AAATTT-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTATTTCATTTCCATAAAAAA--CGT-GAT-TTTTTATTG-TTATA-AATCAGCAACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAGACGAAT-AAGACAGCCATGCGGAAAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAAAGAGTCATAA---G------TTCGCGCAGCTTATTTCT-TC------T--G---------GAT--------TGTCGGGAATGAAAATTTTTNTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GC----AAAAAATGCATGCGATATCGTT-TACGA-TTATTATGAAA-TACCAATGTT-------TAGG-TTTCC-----AATGG-------------ACATGA-ATATTATCAAACAGAATG--TATTTGACGGTAAAAT-ATTATATAA-CTAATG-GCGAATTATCATTGATGATTGTTCACTTAGAATTTTCTTAATCAATCGTTTA-TTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-TATCAACCTATTGTTAGAAAAAAA---GCAAATATA-TCG-TTGTATAAATAC-TCTTTAA-CGGCA-CTT-GT------AGGAAAATATTCAAAATACAAA-A-CGAACCCAAATATCCGTGTACTTGCGTTAATGCATTGTA-CGTTAATGCACTCTGGATATTTT-CGGAATTTTCTTA---ATCAATCAGT-TTCT-AAA--TAC-AACTG-TATTTTGCACCGTATTGC--GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACAA----------AAAA----------------CAATGTATTATTCTTCGATGGTTGAGANNCCATGGAACA---A--TGAGAAACAT-TTTTTCC-CGCAC-------------A-------------CACCTG---AATATT-TA-GACA-AGCCTATATCTATCTTA-CTG-TGTAG---TGTTCATA-CAT---TTTCA-TCGTA-TTGAA-TCTCTA-A-TTTAATTAAGTT---AATTTTCACGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAACATAATTTTTCAAA--TGGA-TAA-TGT-GAAGTACCATTGCTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTT--ATTATAACAT-TGAAAGATGCACATTTTCAGN-TTC-GCACGAATCTTTG-GAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCATGATTTT-TCTCACTGC-ACTGATTTGGAACTTAATAATNAAACGC-GCTA-ATGCTTGACAAAAGAGNNATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGNNACTTCACAAAAG
Reference ( gi|1 ) : CTTTTGCCTATTTTCCGCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-A-ATAATAAACGCAAATTTTTTGTGTTATTCCGTT-TTTTTCT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTATTT-GTCT--AAGATAGATTT-----A--CTCATATTTTAGATAATATTTTCGTGTATGAAAA-GTATTTCATTTCCATAAAGAAATCGT-GAT-TTTTTATTG-TTATATAATCAGCGACCTGAAAAAGCCAATCG-TCGAAAACTAATGAAA---------CCAATTTTTAAACATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAG-CGAAT-AAG-CAGCCATACGGAAAA-AGCTATCACAATGTTTAATTAACGTTTAAAATATTGATTGCTAAAAAGAGTCATA----G------TT-GTG---------------------T--G---------GAT--------TGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAACATGCATGCGATATCGTTGTACGA-TTATTATG-AA-TACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGAT-TTATCAAACAGAATG--TATTTGACGGTAAAAT-ATTATATAAGCTAATG-GCGAATTATCATTGATGATTATGCACTTAAAATTTTCTTAATCAATCGTTTAGTTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-CATCAACCTATTGCTAGAAAGAAATATATAAATATA-TAA-T-ATATAAATACGTCTTTAA-CAGCA-CTT-GT------AGGAAAATATCCAAAATACAGAGA-CGAACCCGATTATCCGTGTACTTGTGTTAATGCATTGTAACATTAATTTACTCTGGATATTTT-CAGAATTTTCTTA---ATCAATCAGTGTTCT-AA---TAC-AACTG-TATTTTG-ACCGTATTG---GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACAA----------AAAAG---------------CAATGTA-TATTCTTCGATGGTTAAGAGCCCATGGA--A---A--TGAGAAACAT-TTGGTCC-CGCAC-------------A-------------CACCTG---AATATT-TA-GACA-GGCCTATAGCTATCTTG-CTG-TGTAG---TGTTCATA-CATG--TTTCA-TCGTAGTTGAAGTCTCTAAAATTCAATTAAGTT---AATTTTCATGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAAAGTGGAGTAA-TGTGGAAGTACCCTTACTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCATATTTTCAGC-CTC-GCACGAATCTTTGGGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGATTTTTTCTCGATGC-ACTGATTTGGAACTTAATAATGAAACGCGGCTAGATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
gi|2 : CTTTTGCCTATTTTCCGCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-A-ATAATAAACGCAAATTTTTTGTGTTATTCCGTT-TTTTTCT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTATTT-GTCT--AAGATAGATTT-----A--CTCATATTTTAGATAATATTTTCGTGTATGAAAA-GTATTTCATTTCCATAAAGAAATCGT-GAT-TTTTTATTG-TTATATAATCAGCGACCTGAAAAAGCCAATCG-TCGAAAACTAATGAAA---------CCAATTTTTAAACATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAG-CGAAT-AAG-CAGCCATACGGAAAA-AGCTATCACAATGTTTAATTAACGTTTAAAATATTGATTGCTAAAAAGAGTCATA----G------TT-GTG---------------------T--G---------GAT--------TGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAACATGCATGCGATATCGTTGTACGA-TTATTATG-AA-TACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGAT-TTATCAAACAGAATG--TATTTGACGGTAAAAT-ATTATATAAGCTAATG-GCGAATTATCATTGATGATTATGCACTTAAAATTTTCTTAATCAATCGTTTAGTTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-CATCAACCTATTGCTAGAAAGAAATATATAAATATA-TAA-T-ATATAAATACGTCTTTAA-CAGCA-CTT-GT------AGGAAAATATCCAAAATACAGAGA-CGAACCCGATTATCCGTGTACTTGTGTTAATGCATTGTAACATTAATTTACTCTGGATATTTT-CAGAATTTTCTTA---ATCAATCAGTGTTCT-AA---TAC-AACTG-TATTTTG-ACCGTATTG---GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACAA----------AAAAG---------------CAATGTA-TATTCTTCGATGGTTAAGAGCCCATGGA--A---A--TGAGAAACAT-TTGGTCC-CGCAC-------------A-------------CACCTG---AATATT-TA-GACA-GGCCTATAGCTATCTTG-CTG-TGTAG---TGTTCATA-CATG--TTTCA-TCGTAGTTGAAGTCTCTAAAATTCAATTAAGTT---AATTTTCATGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAAAGTGGAGTAA-TGTGGAAGTACCCTTACTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCATATTTTCAGC-CTC-GCACGAATCTTTGGGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGATTTTTTCTCGATGC-ACTGATTTGGAACTTAATAATGAAACGCGGCTAGATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
gi|11 : CTCTTGCCTAGGTTTTGCGCTATGTGACG-TAT-AA-T---ACTACTTT-ACGTTACGTCACAGATC-GACGACG-T--ACCC-TAT-CCTCGCGAC-GCATCTGAAG--GCACTGACA-ACAAAAT-AACGCAA--TTTTTGTCAT-TTCTTTT-TTTTTCT-TATT--------AAAAGCGTAATTACCC-GACTTATTTAGTCT--AAAA-AAAATA-----A--CTCATATTTTAGATAATATTTTC-TGTGTGAAAA-GTATTTCATTTCCATAAAAAA
gi|3 : ctTCTGCCTATTTT--GCGCTATGTGACG-TTG-A--T---ACTATTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACG-CATCTGAAG---CACTGACGCA-AAAATATACGCAA-TTTTTTGT-CTATTCTGTT-TTT--CG-TATT-----GAAAA---GGTAAATATCC-GACTTATTT-ATCT--AAAA---ATTT-----AACTTCATATTTTAGAATATATTTTC-TGTATGAAAAAGTGTTTCATTTCCATAAAAAA--CGTAGATATTTTTGTTGGTTA---AAT-AGCACCTTGAAAAAGC--ATCGGTCGAAAACTAATGAAAACATGAAAACCAATTTCTAAAAATCCGGATTTTTT-CACCACGAAGAGACGAAAGTTATTAAAATGAC-TTA-GAAGACGAAT-AAGACAGCCATGCGGAAAACAATTATC-CAAT-TTTAATTATCTTTTAAA----TGTTTGTTAAAAGAGGGCATAAGTCG------TTCGCGCAGCTTATTTCTCTGACGTTTT--G---------GAT--------TGTCGG-AATGA---TTTTTTT-TTAAATAAAAAAATAATGATAT-TTTTT---ATGTTTTGC----AAAAAATGCATGCGATATCGTT-TACGAATTATTATG-AAATACTAATATTATTTCCATAGACTTTTCTCAAAAAT---------------ACATGA-ATATTATCAA-CAGA-TG--TATTTGACGGTAAATA-ATTAT-TAA-CTA-TG--CAAATTATCATTAATGATTGTTC-CTTAGAATTTTCT-AATCA-TCATTTA-TTA-T-TTC---TAACGTCAA-TT-TAAAACTATGAATATCAAC-TATTGTTAGAAAAAAA---GCAGATATA-TTG-TTGTATAAATAC-TCTTTAAATGGCAACTT-TT------AG-AAAATATTCAAA-TACAAA---CGAACCCAAATATCCGTGTACTTGCGTCAATGTATTGTATCGTTAATGCACTCTGAATATTTTTCGGAATTTTCTTACTTATCA-TCATT-TTCT-AAATCTA--AACTGGTATTTTGCACCGTATTGT--GGTCAGAAAAAT-GACTCACTCTAGCAATCCAATAAATGCAATCGACAA----------AAAA----------------CAATGTA-TTATCTTCGATGATGAA-ATTCCATGGA--AGCAA--TGAGAAACATGTT--TCCTCGCAC-------------ATGTAAATGCAAAACATC-G---AATATT--A-GAAA-AGCCTATATATATCTTA-CTG-TGTAAATCTGTTCATATCATACATTTCAATCGTA----------------TTAAATTAAGTT---AATTT-CA-GT-A--T--G--------CTTACACAAA-TCTTAAA-TAG-ATGAAACATAATTTC-CAAA--TGGATTA---GTTGTAGTACCATTGCTGAATAACTCGTAAAATAGAAATACTAA-------TTCTAAAA---A-TTCT-TTTT-CTATATTTT--ATTATAACAT-TGAA-GAT------------------GCACA----TTT-----CAGCGTTCG------CACAAATGTTCAAA-GGACA-TGTCA-GATAGCATGATTT---CTCACTGC-ACTGATTAAGAACTT-ATAATCAAACAC-GCTA-ATGCTTGACAAAAAAAGCATGT-CGA-TGTGAAA--CATTGTA-GTTGTACTACTAATTTTATGGGGGTGG-TGGGGGGGAAACTTCACAAAAc
gi|4 : ttggcTTTGCCTATTTT--GCGCTATGTGACA-TTG-A--T---ACTACTTTACC-TTACGTTACAGA-CAGGCGACGTT--ACCCTTGT-CCTCGC-ACG-CATCTGA-----------CG-C-AAAATAG-CTCAA--TTTTTGT-TTATTCC----TTTTTCT-TA----------------ATAATTA-CC-GACTTATTT-ATCTTTAAAA-AAAC-------A--CTCATATTTTAGATAATATTTTT-TGTATGAAAA-GTATTTAATTTCCATAAAAAAAACGT-AAT-TTT--ATTG-TT-TA-AATCAGC-ACATGAAAAAG--AATCG-TCGAAAAGTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGTTTTTTTTCAC-ACAAAGAGAGGAACGTTATTAAAATGACATT-AGAAGACGAAT-AAGACAGTCATGCGGAAAA-AGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAGAGAGTCAT-----G------TT-TTG---------------------TTAGCGCACTTCTGACATTCTTGATGTC-GAAATGAAAATTT--GTA-TAAA-------AT---GACAT-TTTT----ATGTTT-GC----AAAA-ATGCATGCGATATCATT-TACTA-TTATTATGAAA-TATTAATGTT-------TA---TTTCC------ATGAACTATTTCAAAATACATGA-ATATTATC-AACAG-GTG--TTTTTGACGGTAAAAT-AAT-TATAA-CT-AT--GCGAATTATCATTCAT-ATTGTTCACTTAGAATTTTTTTTATC-ATCGTTTA-TTA-T-T-CTTATAACGTC-AATT-CATAA-TATGA-TCTCAA-CTATTGTGAGAAA-AAAT---CAAATACA-TCGTT-GTATAAATAC-TCTTTAA-GAGCA-CTT-GT------A-GATACTATTC-AAATAC--AAA-CAATCTCAA--AT-TGTGTACTTGCGTTAATGCATTGT-ACGTTAATGCACTCT-GATAGTTT-CATCATTTTCTTA-----CCATCAGT-TTCTAAA---TACAAACTG-AA--TTGCACCGTATTGGTTGGTCAGAAAC-T-GACTCCCTCTAGCA-TCCAATAAACGCAATCGACAA----------AAAA----------------CAATGTATTATTCTTTAATGGTTGAGGGGCCATGGAACA---A--TAAGAAAAATATT--TCC-CGCAC-------------ATG-----------TAAATGCAAAACACTAAA-GACA-TG--TATA--TATCTTA-C---TGTAG---TGTTCATG-CA----TTTCA-TCGTA-TTGAA-----------TTAATTAAGTTTTAAAATTTC-TCT---AT--A--------TTTACACAAA-TCTT-AAATA-AATGAAATATAA----------------TAA-T-T-GAAGTATCATTGCCGAATAACTCGTAAAAAAGAAATACT-A------ATTCTAAAA---A---CTATTTTTCTATATTCT--ATTGTAGCAT-TGAAATATGCACATTTCAGGG-TTC-GCACGGATCTT---GAACAGTGCACGGGCTT-GA-CACTTCTC-AAAGGACA-TGTC-AGAGGGCCGGA--CTTTCTCAATGC-ACTGATTTGGAACTTAA-A---------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG---TATTAATTTCATGGG---AGTAAGAG
gi|5 : tcTTTGCCTATTTT--GTGCTATGTGACG-TTG-A--T---ACTACTTTA-CGTTACGTCACAGA-CAGGCGACGTT--ACCCTTGT-CCTCAC-ACG-CATATGAAA---CAATGACG-C-A-AACTAACGCAA--TTTTTGT------CTATT-TTTTT-T-TATC-----AAAAA---GATAATTA-CC-GACTTATTT-ATCT--A-------TTTTTTAAA--CTCTTATTTCAGATCATATTTTTG-GAATGAAAA-GTATTTCATTTCCATAAAAAA----C-AAT-TATTTATTG-TT-TA-AATCAG-AACCAGAAAAAGC--ATCG-TCGAAAACTAATGAAAA--------CCAATTTTTAAAAATCCGGATTGTTTTCAT-ATGAAGAGACGAAACTTATTAAAATGACATT-AGAAGACGAATAAAA-TAGGTATGCGGAAAC-AGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCCAAAAAGACTCGTGT---GGTTTGTTT-GCGCAACTTCTGACGTTC------T--G---------GAT--------TGT-GGGAATT--ACTTTTTCTA-TAAA-------AT-----TATATTTTTTTAA-GTTT-GC----AAAAATTGTATGCGATATCGTT-TACGA-TTATTATGAAA-TAGCAATGTT-------TA---TTTCC------ATGG-------------AC-T---AT-T--TCAAAATGCATGAATATTTGACGGTGAAATAATTATA------AATATGCGAATTATCATCG-TTATTGTTCACTTATAATTTTC-TAATC-ATGATTTA-TTATT-C-C---TAACGTT-AATT-TATGA-TATAA-TATCAACC-ATTGTTAGAAAAA---ACGCAAATATATTGT-T-GTATAAATAC-TCTTTAA-AAGCA-CTTCATGACTTGAAGAAACAATTC-AAATACA---ATCGAACTCAAATATTCTTGTACTTTCGTTAAT-----------TTAA--TGCTCT-----TCT------ATTTTTTCA---AC--ATCAGT-TTCTAAA---TAT-AACTG-TATTTTGCATCGTATTGC--GGTCAGAAAA-T-GTCTCTCTCTAGCA-TCCAAGAAATTCAATCGACAA----------AAAA----------------CAATGTATTATTTTTCGATGccg
gi|10 : tcTTTGCCTATTTT--GCGCTATGTCGCGATTG-AG-TTGAACTATTT--ACGTTACGTCACAG--CAGGCGACGTTTTACCCCTGTGTCCCGC-ACG-C-TCTGA-GAAGCAACGACG----CAA-AAACGCA---TTTTGGTAATCTTCCTTTATTTTTCT-TATT-----AAAAA---GGTAATTA-CC-GACTTATAT-AATC--AAAAAAAATTT-----A--ATCATATTTTAGATAATATTTT--TGTA-GAAAA-GTATTTCATTTCCATAATAA---CGT-AA--TTTTTATTG-TT-TA-AATCA
gi|12 : ctcTTTGCCTATTTT--GCGCTATGTGACG-TTATAACT---A-TACTTTATCGTTACGTCA-AGA-CAGGCGACGTT--ACTCTTGT-CCTCGC-AC-GCATCT---GAAGCACTGACG-C-A-AAT-AACGCAA--TTTTTGTCT--TTCCTTT-TTTTTCTGTATTTGAAAAAAAAAAGGCTAATTA-CCGGAGTTATTT-ATCT--AA---AAATTA-----A--CTCATATTTTAGATAATATTTTC-TGTa
gi|8 : cAATAA-CGCAA--TTTTTGT-CTATTCC-TG-TTTTTCG-TATT-----GAAAA---GGTAAATA-CC-GACTTATTT-ATCT--AAAA---ATTTTA---A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTGTTTCATTTCCATAAAAAA--CGT-AAT-TTTTGTTGG-TTA---AATCAGC-ACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTCTAAAAATCCGGATTTT-TTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATT-AGAAGACGAAT-AAGACAGCCATGCGGAAAACAATTATC-CAAT-TTTAATTATCTTTTAAAATAT---TTGTTAAAAAGAGGCATAAC--G------TTCGCGCAGCTTATTTCTGACGTTC--T--G---------GAT--------TGTC-GGAATG---ATTTTTTT-TTAAA-------
gi|15 : cgcaaTATTTTACATAATATTTTC-TGTATGAAAA-GAGATTCATTTCCATAAAAAA--CG--GAA-TTTTTATTG-TT-TA-AATCAGC-ACATGAAAAAGC--ATCG-TCGAAAACTAATGAAA---------taa
gi|7 : TATAA-CTA-TG--CGAATTATCATTGAT-ATTGTTCACTTAGAATTTTCT-AATCA-TCGTTCA-TTA-TTC-C---TAACGTCAATTTGTA--A-TATCA-TATCAAC-TATTGTTAGAAAAAAA---GCAAATATA-TTG-TTGTATAAATAC-TCTTGAA-CAGCA-CTT-GT------AG-AAAGTATTCAAA-TACAAA---CAAACCCAAATATCCGTGTACTTGCATTAATGCATTGTA-CGTTAATGCACTCTG-ATATTTT-CAGAATTTTCCTC----TCA-TCAGT-TTCT-AAA--TAC-AACTG-TATTTTGCACCGTATTGC--GGTCAGAAAA-T-GACTCCATCTAGCA-TCCAATAAATGCAATCGACAAAAAAACCCCTAAAAA---------------CAATGTATTATTCTTCGATGGTTGAGAAGCCATGGA--A---AAGTGAGAAACGT-TCTTTCC-CGCACAGGTAAATGCAAAA-------------CA-CTG---AATATT-TA-GACG-ATCCTATAGCTATCTTA-CTG-TGCAG---TGTTTATA-TATa
gi|6 : taatATGA-TATCAAC-TATTGTTAGAAAAAAA---GCAGATATA-TTG-TTGTATAAATAC-TCTTTAA-TGGCA-CTT-TT------AG-AAAATATTCAAA-TACAAA---CGAACCCAAATATCCGTGTACTTGCGTCAATGTATTGTA-CGTTAATGCACTCTG-ATATTTT-CGGAATTTTCTTA----TCA-TCATT-TTCT-AAA--TAC-AA-TG-TATTTTGCACCGTATTGT--GGTCAGAAAA-T-GACTCACTCTAGCA-TCCAATAAATGCAATCGACAA----------AAAA----------------CAATGTATTAATCTTCGATGGATGA-ATTCCATGGAACA---A--TGAGAAACAT-TGTTTCC-TGCACATGTAAATGCAAAA-------------CATC-G---AATATT-TA-GAAA-AGCCTATATATATCTTA-CTG-TGTAAATCTGTTCATA-CA----TTTCA-TCGTA-----------------TTAATTAAGTT---AA-TTTCA-GT---AT--G--------CTTACACAAA-TCTT-AAATA-GATGAAACATAA-TTTCCAAA--TGGA-TAATTGT---AGTACCATTGCTGAATAACTCGTAAAATAGAAATACT-A------ATTCTAAAA---A-TTC--TTTTTCTAa
gi|14 : -TATTTTGCACCGTATTGC--GGTCAGAAAA-TCGACTCCCTCTAGTA-TCCAATAAATGCAATCAACAA----------AAAAAAACAACAAAAAACCCCGATGTATTATTCCTCGATGGTTGAGA
gi|9 : -------------A-------------CAC-TG---AATATT-TAAGACAAGGCCTATGTCTTTCTTGACTGCTGTAG---TGTTCATA-CAT-----TCA-TCGTA-TTGAA-TCTCTAGA-TTTAATTAAGTT---GATG---ACGTTAAATTCAGTTGCTTCCTTACACAAACTCTTAA------------------TTTTCAAA--TAGA-------T--AAGT--------TGAGTAACTCGTAAAAAAG-AAAACCGATCCCTGGCTTTAAAACACAGGACC-ATT----GTATT-----------CAT-TGAAA-ATGCACATTTTCAGG-TTCCGCACTAATTCTTGA-ACCAGTGCACGGGCTTCTTTCAA-TTTCATAA-GACA-TGTC-AGAGGGCATGATTGTGTTCCACTGCAATTGATTTCGAACTTAagc
gi|13 : tgcaaaAAGATGCACA-TTTCAGCGTTC-GCACAAATGTT
gi|16 : TC-GCACGAATCTT---GAACAGTGCACGGGCTT------------------ACAATGTCA-GAAAGCATGATTTT--CTCACTGC-ACTGATATGGAACTT-GCAATGAAACGC-GCTA-ATGCTTGACAAAAcaaaggacatgtcagatagcatgattttctcactgcactgattaagaacttataatcaaacacgctaatgcttgacaaaaagcat
gi|13 : ACAAATGTTCAAA-GGACA-TGTCA-GATAGCATGATTTT--CTCACTGC-ACTGATTAAGAACTT-ATAATCAAACAC-GCTA-ATGCTTGACAAAAa
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 11 11 1 1 2 1111 1 11 11 11111 111111 222 111111 11 11 2 1 11 11 222222 1 1 1 1 00000000000000000000000000000000000000000 11 11 222222222222 33333 1 1 55555555555555555555555555555555555555555 1 1 11 1 1 11111 1 11 1 111 1 1 222 1 111111111 1 22 1 11 22222222 1 11 111 22222222222 4444444444444444 11 888888888888888888888888888888888888 111 222 11111 11 1 666666666666 111 3333333333333333333 11 11 2222222222 222222222 11111 22 1 11111 2222 11111 11 222 11 1 1 111 111 1 22
lowQualScore : 66 33 5 5 66 888 5 5 66 5 5 1 6666 55 4 2 22 4 55 00 55555 4 444444 333 4 8 4 4 66 8 5 333333 66 8 4 88 88 11 7 0 00 55 5 222222 6 5 7 7 5 3 3 44444444444444444444444444444444444444444 1 6 1 44 1 44 777777777777 8 7777 0 8 44444 0 6 8 0 66666666666666666666666666666666666666666 0 6 0 0 0 0 99 11 1 0 3 99999 0 7 44 3 6 888 111 7 3 5 3 6 5 1 000 6 5 1 888 5 5 888888888 5 2 5 77 7 1 44 5 2 55555555 1 5 33 5 2 555 5 5 5 33333333333 3333333333333333 3 22 77 1 555555555555555555555555555555555555 000 77 5 2 5 22 5 5 000 44444 66 3 555555555555 111 3 3 7777777777777777777 6 7 3 66 2 3 5 88 1 6666666666 3 111111111 77777 88 3 22 3 6 2 3 00000 0 4444 44444 22 1 99 5 77 5 111 0 5 77 1 3 3 22 5 5 5 55 777 777 0 22 44
lowQualScore : .. .. . . .. ... . . .. . . . .... .. . . .. . .. .. ..... . ...... ... . . . . .. . . ...... .. . . .. .. .. . . .. .. . ...... . . . . . . . ......................................... . . . .. . .. ............ . .... . . ..... . . . . ......................................... . . . . . . .. .. . . . ..... . . .. . . ... ... . . . . . . . ... . . . ... . . ......... . . . .. . . .. . . ........ . . .. . . ... . . . ........... ................ . .. .. . .................................... ... .. . . . .. . . ... ..... .. . ............ ... . . ................... . . . .. . . . .. . .......... . ......... ..... .. . .. . . . . ..... . .... ..... .. . .. . .. . ... . . .. . . . .. . . . .. ... ... . .. ..
lowQualScore : 99 88 0 0 22 888 6 0 99 0 0 2 8888 44 4 8 22 4 44 99 33333 4 888888 777 4 9 4 4 11 9 3 444444 11 0 4 33 22 55 8 0 77 77 7 444444 7 5 3 3 0 3 3 55555555555555555555555555555555555555555 0 7 0 55 0 77 999999999999 0 6666 8 0 88888 6 0 0 6 22222222222222222222222222222222222222222 8 0 6 8 8 8 44 00 4 6 3 00000 8 3 77 3 7 777 777 3 5 0 5 7 7 4 000 3 0 4 999 7 7 333333333 0 0 0 11 1 7 44 7 7 66666666 4 0 66 0 5 444 0 0 0 88888888888 1111111111111111 2 00 55 8 333333333333333333333333333333333333 000 44 7 3 7 00 7 7 000 33333 44 3 777777777777 777 5 2 8888888888888888888 7 3 2 00 2 2 7 33 0 8888888888 0 777777777 77777 33 2 00 8 0 5 2 11111 1 2222 22222 77 4 11 7 00 7 333 7 7 22 0 3 3 00 2 8 2 88 555 555 0 00 33
consensus : CTTTTGCCTA--TTTT--GCGCTATGTGACG-TTG-AA-T---ACTACTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACGC-AAAA-TAAACGCAA--TTTTT-GTC-T-ATTCC-TT-TTTTTCT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTA-TCT--AAAA-AAATTT-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTATTTCATTTCCATAAAAAA--CGT-GAT-TTTTTATTGTT-TA-AATCAGCGACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAGACGAATAAGACAGCCATGCGGAAAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAAAGAGTCATA-------GT---TCGCGCAGCTT-T--C-----T-------TCTGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAAAATGCATGCGATATCGTTGTACGA-TTATTATGAAATACCAATGTT-------TAAGG--TTTCC----AATGG-------------ACATGAGATATTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAA-CTAATGGCGAATTATCATTGATGATTGTTCACTTAGAATTTTCTTAATCAATCGTTTA-TTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-TATCAACCTATTGTTAGAAAAAAA---GCAAATATATCGTTGTATAAATAC-TCTTTAA-CGGCA-CTT-GT------AGGAAAATATTCAAAATACAAA-ACGAACCCGAATATCCGTGTACTTGCGTTAATGCATTGTA-CGTTAATGCACTCTGGATATTTT-CGGAATTTTCTTA---ATCAATCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAGNCCATGGAA-CAATGAGAAACATTNTTTCCCGCAC-------------A-G-----------C---AC-CTG---AATATT-TA-GACAAG-CCTATATCTATCTT-ACTG-TGTAG---TGTTCATA-----CAT-TTTCATCGTA-TTGAA-TCTCTA-A--TTTAATTAAGTT---AATTTTCACGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAA--TGGA-TAAT-TG-AAGTACCATTGCTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCACATTTTCAG-GTT-CGCACGAATCTTTGG-AACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGATT-TTT-CTCGCTGC-ACTGATTTGGAACTTAATAATGAAACGCG-CTA-ATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
Reference ( family-1935 ) : CTTTTGCCTA--TTTT--GCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGA-CAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACGN-AAAA-TAAACGCAA--TTTTT-GTN-T-ATTCCNTT-TTTTTCT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTA-TCT--AAAA-AAATTT-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTATTTCATTTCCATAAAAAA--CGT-GAT-TTTTTATTGTTATA-AATCAGCAACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAGACGAATAAGACAGCCATGCGGAAAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAAAGAGTCATA-----A-GT---TCGCGCAGCTTATTTC-----T-------TCTGGATTGTCGGGAATGAAAATTTTTNTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GC----AAAAAATGCATGCGATATCGTT-TACGA-TTATTATGAAATACCAATGTT-------TA-GG--TTTCC----AATGG-------------ACATGA-ATATTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAA-CTAATGGCGAATTATCATTGATGATTGTTCACTTAGAATTTTCTTAATCAATCGTTTA-TTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-TATCAACCTATTGTTAGAAAAAAA---GCAAATATATCGTTGTATAAATAC-TCTTTAA-CGGCA-CTT-GT------AGGAAAATATTCAAAATACAAA-ACGAACCCAAATATCCGTGTACTTGCGTTAATGCATTGTA-CGTTAATGCACTCTGGATATTTT-CGGAATTTTCTTA---ATCAATCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTCGATGGTTGAGANNCCATGGAA-CAATGAGAAACATTTTTTCCCGCAC-------------A-------------C---AC-CTG---AATATT-TA-GACAAG-CCTATATCTATCTT-ACTG-TGTAG---TGTTCATA-----CAT-TTTCATCGTA-TTGAA-TCTCTA-A--TTTAATTAAGTT---AATTTTCACGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAACATAATTTTTCAAA--TGGA-TAATGTG-AAGTACCATTGCTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTT--ATTATAACAT-TGAAAGATGCACATTTTCAG-NTT-CGCACGAATCTTTGG-AACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCATGATT-TTT-CTCACTGC-ACTGATTTGGAACTTAATAATNAAACGCG-CTA-ATGCTTGACAAAAGAGNNATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGNNACTTCACAAAAG
gi|1 : CTTTTGCCTA--TTTTCCGCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACGA-ATAA-TAAACGCAAATTTTTT-GTG-TTATTCCGTT-TTTTTCT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTG-TCT--AAGATAGATTT-----A--CTCATATTTTAGATAATATTTTCGTGTATGAAAA-GTATTTCATTTCCATAAAGAAATCGT-GAT-TTTTTATTGTTATATAATCAGCGACCTGAAAAAGCCAATCG-TCGAAAACTAATGAAA---------CCAATTTTTAAACATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAG-CGAATAAG-CAGCCATACGGAAAA-AGCTATCACAATGTTTAATTAACGTTTAAAATATTGATTGCTAAAAAGAGTCATA-------GT---T-GTG--------------------------TGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAACATGCATGCGATATCGTTGTACGA-TTATTATGAA-TACCAATGTT-------TAAGG--TTTCC----AATGG-------------ACATGAGAT-TTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAAGCTAATGGCGAATTATCATTGATGATTATGCACTTAAAATTTTCTTAATCAATCGTTTAGTTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-CATCAACCTATTGCTAGAAAGAAATATATAAATATATAAT-ATATAAATACGTCTTTAA-CAGCA-CTT-GT------AGGAAAATATCCAAAATACAGAGACGAACCCGATTATCCGTGTACTTGTGTTAATGCATTGTAACATTAATTTACTCTGGATATTTT-CAGAATTTTCTTA---ATCAATCAGTGTTCTAA-TAC--AACTG-TATTTTG-ACCGTATTG---GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAAG---------------CAATGTAT-ATTCTTCGATGGTTAAGAGCCCATGGAA---ATGAGAAACATTTGGTCCCGCAC-------------A-------------C---AC-CTG---AATATT-TA-GACAGG-CCTATAGCTATCTT-GCTG-TGTAG---TGTTCATA-----CATGTTTCATCGTAGTTGAAGTCTCTA-AAATTCAATTAAGTT---AATTTTCATGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAAAGTGGAGTAATGTGGAAGTACCCTTACTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCATATTTTCAG-CCT-CGCACGAATCTTTGGGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGATT-TTTTCTCGATGC-ACTGATTTGGAACTTAATAATGAAACGCGGCTAGATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
gi|10 : TTTGCCTA--TTTT--GCGCTATGTCGCGATTG-AG-TTGAACTATTT--ACGTTACGTCACAG--CAGGCGACGTTTTACCCCTGTGTCCCGC-ACG-C-TCTGA-GAAGCAACGACGC-AAAA----ACGCA---TTTTG-GTAAT-CTTCCTTTATTTTTCT-TATT-----AAAAA---GGTAATTA-CC-GACTTATATAA-TCA--AAAA-AAATTT-----A--ATCATATTTTAGATAATATTTT--TGTA-GAAAA-GTATTTCATTTCCAT-AATAA--CGT-AA--TTTTTATTGTT-TA-AATCA
gi|11 : ctcCTCTTGCCTAGGTTTT--GCGCTATGTGACG-TAT-AA-T---ACTACTTTA-CGTTACGTCACAGA-TCGACGACGT---ACCCT-AT-CCTCGCGACG-CATCTGAAG--GCACTGACAACAAAA-TAA-CGCAA--TTTTT-GTC-A-TTTCTTTT-TTTTTCT-TATT--------AAAAGCGTAATTA-CCCGACTTAT-TTAGTCT--AAAA-AAAATA-----A--CTCATATTTTAGATAATATTTTC-TGTGTGAAAA-GTATTTCATTTCCATAAAAAA--Ca
gi|12 : ctTTTGCCTA--TTTT--GCGCTATGTGACG-TTATAACT---A-TACTTTATCGTTACGTCA-AGA-CAGGCGACGTT--ACTCTTGT-CCTCGC-AC-GCATCT---GAAGCACTGACGC--AAA-T-AACGCAA--TTTTT-GTC-T--TTCCTTT-TTTTTCTGTATTTGAAAAAAAAAAGGCTAATTA-CCGGAGTTAT-TTA-TCT----AA-AAATTA-----A--CTCATATTTTAGATAATATTTTC-TGT
gi|13 : cAAGATGCACA-TTTCAGCGTT-CGCACAAATGTT
gi|13 : ACAAATGTTCAAA-GGACA-TGTCA-GATAGCATGATT-TT--CTCACTGC-ACTGATTAAGAACTTA-TAATCAAACACG-CTA-ATGCTTGACAAAAcaaaggacatgtcagatagcatgattttctcactgcactgattaagaacttataatcaaacacgctaatgcttgacaaaaagcat
gi|14 : aagatgcacatttcagcgttcgc-TATTTTGCACCGTATTG--CGGTCAGAAAA-TCGACTCCCTCTAGTA-TCCAATAAATGCAATCAACA-----------AAAAAAAACAACAAAAAACCCCGATGTATTATTCCTCGATGGTTGAGAAGCagcat
gi|15 : TATTTTACATAATATTTTC-TGTATGAAAA-GAGATTCATTTCCATAAAAAA--CG--GAA-TTTTTATTGTT-TA-AATCAGC-ACATGAAAAAGC--ATCG-TCGAAAACTAATGAAAA
gi|16 : T-CGCACGAATCTT--G-AACAGTGCACGGGCTT------------------ACAATGTCA-GAAAGCATGATT-TT--CTCACTGC-ACTGATATGGAACTTG-CAATGAAACGCG-CTA-ATGCTTGACAAAA
gi|2 : CTTTTGCCTA--TTTTCCGCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACGA-ATAA-TAAACGCAAATTTTTT-GTG-TTATTCCGTT-TTTTTCT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTG-TCT--AAGATAGATTT-----A--CTCATATTTTAGATAATATTTTCGTGTATGAAAA-GTATTTCATTTCCATAAAGAAATCGT-GAT-TTTTTATTGTTATATAATCAGCGACCTGAAAAAGCCAATCG-TCGAAAACTAATGAAA---------CCAATTTTTAAACATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAG-CGAATAAG-CAGCCATACGGAAAA-AGCTATCACAATGTTTAATTAACGTTTAAAATATTGATTGCTAAAAAGAGTCATA-------GT---T-GTG--------------------------TGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAACATGCATGCGATATCGTTGTACGA-TTATTATGAA-TACCAATGTT-------TAAGG--TTTCC----AATGG-------------ACATGAGAT-TTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAAGCTAATGGCGAATTATCATTGATGATTATGCACTTAAAATTTTCTTAATCAATCGTTTAGTTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-CATCAACCTATTGCTAGAAAGAAATATATAAATATATAAT-ATATAAATACGTCTTTAA-CAGCA-CTT-GT------AGGAAAATATCCAAAATACAGAGACGAACCCGATTATCCGTGTACTTGTGTTAATGCATTGTAACATTAATTTACTCTGGATATTTT-CAGAATTTTCTTA---ATCAATCAGTGTTCTAA-TAC--AACTG-TATTTTG-ACCGTATTG---GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAAG---------------CAATGTAT-ATTCTTCGATGGTTAAGAGCCCATGGAA---ATGAGAAACATTTGGTCCCGCAC-------------A-------------C---AC-CTG---AATATT-TA-GACAGG-CCTATAGCTATCTT-GCTG-TGTAG---TGTTCATA-----CATGTTTCATCGTAGTTGAAGTCTCTA-AAATTCAATTAAGTT---AATTTTCATGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAAAGTGGAGTAATGTGGAAGTACCCTTACTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCATATTTTCAG-CCT-CGCACGAATCTTTGGGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGATT-TTTTCTCGATGC-ACTGATTTGGAACTTAATAATGAAACGCGGCTAGATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAGa
gi|3 : TCTGCCTA--TTTT--GCGCTATGTGACG-TTG-A--T---ACTATTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACG-CATCTGAAG---CACTGACGC-AAAAATATACGCAA--TTTTTTGTC-T-ATTC--TG-TTTTTCG-TATT-----GAAAA---GGTAAATATCC-GACTTAT-TTA-TCT--AAAA-A--TTT-----AACTTCATATTTTAGAATATATTTTC-TGTATGAAAAAGTGTTTCATTTCCATAAAAAA--CGTAGATATTTTTGTTGGT-TA-AAT-AGCACCTTGAAAAAGC--ATCGGTCGAAAACTAATGAAAACATGAAAACCAATTTCTAAAAATCCGGATTTTTT-CACCACGAAGAGACGAAAGTTATTAAAATGAC-TTA-GAAGACGAATAAGACAGCCATGCGGAAAACAATTATC-CAAT-TTTAATTATCTTTTAAA----TGTTTGTTAAAAGAGGGCATA-----A-GTCGTTCGCGCAGCTTATTTC-----TCTGACGTTTTGGATTGTCGG-AATGA---TTTTTTT-TTAAATAAAAAAATAATGATAT-TTTTT---ATGTTTTGC----AAAAAATGCATGCGATATCGTT-TACGAATTATTATGAAATACTAATATTATTTCCATA-GACTTTTCTCAAAAAT---------------ACATGA-ATATTATCAA-CAGA-TG--TATTTGACGGTAAATAATTAT-TAA-CTA-TG-CAAATTATCATTAATGATTGTTC-CTTAGAATTTTCT-AATCA-TCATTTA-TTA-T-TTC---TAACGTCAA-TT-TAAAACTATGAATATCAAC-TATTGTTAGAAAAAAA---GCAGATATATTGTTGTATAAATAC-TCTTTAAATGGCAACTT-TT------AG-AAAATATTCAAA-TACAAA--CGAACCCAAATATCCGTGTACTTGCGTCAATGTATTGTATCGTTAATGCACTCTGAATATTTTTCGGAATTTTCTTACTTATCA-TCATT-TTCTAAAT-CTAAACTGGTATTTTGCACCGTATTG--TGGTCAGAAAAAT-GACTCACTCTAGCAATCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTAT-CTTCGATGAT-GAAATTCCATGGAAGCAATGAGAAACATGTTTCCTCGCAC-------------ATGTAAATGCAAAAC---AT-C-G---AATATT--A-GAAAAG-CCTATATATATCTT-ACTG-TGTAAATCTGTTCATATCATACAT-TTCAATCGTA-TTAAA-T---------------TAAGTT---AATTT-CA-GT-A--T--G--------CTTACACAAA-TCTTAAA-TAG-ATGAAACATAATTTC-CAAA--TGGA-TTAGTTG-TAGTACCATTGCTGAATAACTCGTAAAATAGAAATACTAA-------TTCTAAAA---A-TTCT-TTTT-CTATATTTT--ATTATAACAT-TGAA-GAT------------------GCACA----TTT-----CAGCGTTCG------CACAAATGTTCAAA-GGACA-TGTCA-GATAGCATGATT-T---CTCACTGC-ACTGATTAAGAACTTA-TAATCAAACACG-CTA-ATGCTTGACAAAAAAAGCATGT-CGA-TGTGAAA--CATTGTA-GTTGTACTACTAATTTTATGGGGGTGG-TGGGGGGGAAACTTCACAAAA
gi|4 : ttggcTTTGCCTA--TTTT--GCGCTATGTGACA-TTG-A--T---ACTACTTTACC-TTACGTTACAGA-CAGGCGACGTT--ACCCTTGT-CCTCGC-ACG-CATCTGA-----------CGC-AAAA-TAG-CTCAA--TTTTT-GTT-T-ATTCC----TTTTTCT-TA----------------ATAATTA-CC-GACTTAT-TTA-TCTTTAAAA-AAAC-------A--CTCATATTTTAGATAATATTTTT-TGTATGAAAA-GTATTTAATTTCCATAAAAAAAACGT-AAT-TTT--ATTGTT-TA-AATCAGCA-CATGAAAAAGA--ATCG-TCGAAAAGTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGTTTTTTTTCAC-ACAAAGAGAGGAACGTTATTAAAATGACATT-AGAAGACGAATAAGACAGTCATGCGGAAAA-AGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAGAGAGTCATGTTT--T-GT---TAGCGCA-CTTCTGACA----T-------TCTTGA-TGTC-GAAATGAAAA--TTTGTA-TAAA-------AT---GACAT-TTTT----ATGTTT-GC-----AAAAATGCATGCGATATCATT-TACTA-TTATTATGAAATATTAATGTT-------TA-----TTTCC-----ATGAACTATTTCAAAATACATGA-ATATTATC-AACAG-GTG--TTTTTGACGGTAAAATAAT-TATAA-CT-AT-GCGAATTATCATTCAT-ATTGTTCACTTAGAATTTTTTTTATC-ATCGTTTA-TTA-T-T-CTTATAACGTC-AATT-CATAA-TATGA-TCTCAA-CTATTGTGAG-AAAAAA---TCAAATACATCGTTGTATAAATAC-TCTTTAA-GAGCA-CTT-GT------A-GATACTATTC-AAATAC-AA-ACAATCTCAAAT---TGTGTACTTGCGTTAATGCATTGTA-CGTTAATGCACTCT-GATAGTTT-CATCATTTTCTTA-----CCATCAGT-TTCTAAATACA-AACTG-AA--TTGCACCGTATTGGTTGGTCAGAAAC-T-GACTCCCTCTAGCA-TCCAATAAACGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTTAATGGTTGAGGGGCCATGGAA-CAATAAGAAAAA-TATTTCCCGCAC-------------ATG-----------T---AA-ATGCAAAACACTAAA-GACA-----TGTATATATCTT-AC---TGTAG---TGTTCATG-----CA--TTTCATCGTA-TTGAA------------TTAATTAAGTTTTAAAATTTCTC-T---AT--A--------TTTACACAAA-TCTT-AAATA-AATGAAATATAAT------AA--T---------TG-AAGTATCATTGCCGAATAACTCGTAAAAAAGAAATACT-A------ATTCTAAAA---A---CTATTTTTCTATATTCT--ATTGTAGCAT-TGAAATATGCACATTTCAGG-GTT-CGCACGGATCTT--G-AACAGTGCACGGGCTT-GA-CACTTCTC-AAAGGACA-TGTC-AGAGGGCCGGA-C-TTT-CTCAATGC-ACTGATTTGGAACTTAA-ANNNNNNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAT----------TAATTTCATGGG---AGTAAGAG
gi|5 : tcTTTGCCTA--TTTT--GTGCTATGTGACG-TTG-A--T---ACTACTTTA-CGTTACGTCACAGA-CAGGCGACGTT--ACCCTTGT-CCTCAC-ACG-CATATGAAA---CAATGACGC-AAAC-TAA-CGCAA--TTTTT-GTC-T-ATT-------TTTTTT-TATC-----AAAAA---GATAATTA-CC-GACTTAT-TTA-TCT--A-------TTTTTTAAA--CTCTTATTTCAGATCATATTTTT-GGAATGAAAA-GTATTTCATTTCCATAAAAAA--CA---AT-TATTTATTGTT-TA-AATCAG-AACCAGAAAAAGC--ATCG-TCGAAAACTAATGA--------AAACCAATTTTTAAAAATCCGGATTGTTTTCAT-ATGAAGAGACGAAACTTATTAAAATGACATT-AGAAGACGAATAAAATAGGTATGCGG-AAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCCAAAAAGACTCGTGTGGTTT-GT---TTGCGCAACTTCTGACG----T-------TCTGGATTGT-GGGAATT--ACTTTTTCTA-TAAA-------AT-----TATATTTTTTTAA-GTTT-GC----AAAAATTGTATGCGATATCGTT-TACGA-TTATTATGAAATAGCAATGTT-------TA-----TTTCC-----ATGG-------------AC------TATT-TCAAAATGCATGAATATTTGACGGTGAAATAAT-TATAA-AT-AT-GCGAATTATCATCG-TTATTGTTCACTTATAATTTTC-TAATC-ATGATTTA-TTATT-C-C---TAACGTT-AATT-TATGA-TATAA-TATCAACC-ATTGTTAGAAAAAAC---GCAAATATATTGTTGTATAAATAC-TCTTTAA-AAGCA-CTTCATGACTTGAAGAAACAATTC-AAATAC-AA-TCGAACTCAAATATTCTTGTACTTTCGTTAAT-----------TTAATG--CTCT-----TCT------ATTTTTTCA---AC--ATCAGT-TTCTAAATAT--AACTG-TATTTTGCATCGTATTG--CGGTCAGAAAA-T-GTCTCTCTCTAGCA-TCCAAGAAATTCAATCGACA-----------AAAAA----------------CAATGTATTATTTTTCGATGccg
gi|6 : tcATGA-TATCAAC-TATTGTTAGAAAAAAA---GCAGATATATTGTTGTATAAATAC-TCTTTAA-TGGCA-CTT-TT------AG-AAAATATTCAAA-TACAAA--CGAACCCAAATATCCGTGTACTTGCGTCAATGTATTGTA-CGTTAATGCACTCTG-ATATTTT-CGGAATTTTCTTA----TCA-TCATT-TTCTAAATAC--AA-TG-TATTTTGCACCGTATTG--TGGTCAGAAAA-T-GACTCACTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTAATCTTCGATGGATGA-ATTCCATGGAA-CAATGAGAAACATTGTTTCCTGCACATGTAAATGCAAAA-------------C---AT-C-G---AATATT-TA-GAAAAG-CCTATATATATCTT-ACTG-TGTAAATCTGTTCATA-----CA--TTTCATCGTA------------------TTAATTAAGTT---AA-TTTCA-GT---AT--G--------CTTACACAAA-TCTT-AAATA-GATGAAACATAA-TTTCCAAA--TGGA-TAAT-TG-TAGTACCATTGCTGAATAACTCGTAAAATAGAAATACT-A------ATTCTAAAA---A-TTC--TTTTTCTA
gi|7 : TATAA-CTA-TG-CGAATTATCATTGAT-ATTGTTCACTTAGAATTTTCT-AATCA-TCGTTCA-TTA-TTC-C---TAACGTCAATTTGTA--A-TATCA-TATCAAC-TATTGTTAGAAAAAAA---GCAAATATATTGTTGTATAAATAC-TCTTGAA-CAGCA-CTT-GT------AG-AAAGTATTCAAA-TACAAA--CAAACCCAAATATCCGTGTACTTGCATTAATGCATTGTA-CGTTAATGCACTCTG-ATATTTT-CAGAATTTTCCTC----TCA-TCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCATCTAGCA-TCCAATAAATGCAATCGACAAAAAAACCCCTAAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAAGCCATGGAA-AAGTGAGAAACGTTCTTTCCCGCAC-------------AGGTAAATG-----CAAAACACTG---AATATT-TA-GACGAT-CCTATAGCTATCTT-ACTG-TGCAG---TGTTTATA-----TAT-
gi|8 : taatCGC-AAAA-TAA-CGCAA--TTTTT-GTC-T-ATTCC-TG-TTTTTCG-TATT-----GAAAA---GGTAAATA-CC-GACTTAT-TTA-TCT--AAAA-ATTTTA-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTGTTTCATTTCCATAAAAAA--CGT-AA--TTTTTGTTGGT-TA-AATCAGC-ACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTCTAAAAATCCGGA-TTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATT-AGAAGACGAATAAGACAGCCATGCGGAAAACAATTATC-CAAT-TTTAATTATCTTTTAAAATAT---TTGTTAAAAAGAGGCATA-----ACGT---TCGCGCAGCTTATTTCTGACGT-------TCTGGATTGTC-GGAATG---ATTTTTTT-TTAAA-------a
gi|9 : -------------A-------------C---AC--TG---AATATT-TAAGACAAGGCCTATGTCTTTCTTGACTGCTGTAG---TGTTCATA-----CAT-T--CATCGTA-TTGAA-TCTCTAGA--TTTAATTAAGTT---GATG---ACGTTAAATTCAGTTGCTTCCTTACACAAACTCTTAA------------------TTTTCAAA--TAGA-TAA---------------GTTGAGTAACTCGTAAAAAAGAAA-ACCGATCCCTGGCTTTAAAACACAGGACC----------ATTGT--ATT----CAT-TGAAA-ATGCACATTTTCAG-GTTCCGCACTAATTCTTGA-ACCAGTGCACGGGCTTCTTTCAA-TTTCATAA-GACA-TGTC-AGAGGGCATGATTGTGT-TCCACTGCAATTGATTTCGAACTTAtaa
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 11 11 1 11 2 1111 1 11 111 111111 222 111111 11 11 1 1 1 11 222222 1 1 1 1 2222222222222222222222222222222222222222 11 11 222222222222 3333 2 1 222222222222 55555555555555555555555 1 1 11 1 1 11111 1 11 1 111 1 1 222 1 111111111 1 22 1 11 22222222 1 11 111 22222222222 4444444444444444 11 999999999999999999999 111 222 11111 11 1 666666666666 111 3333333333333333333 11 11 11 1 11111 222222222 11111 22 2 222 11111 11 1 11 1 1 111 111 1 1
lowQualScore : 66 33 5 5 66 888 5 22 66 5 5 1 6666 4 4 2 22 4 111 99 66 66 4 444444 333 4 8 4 4 66 8 5 333333 66 8 4 88 88 11 0 0 6 55 5 222222 6 5 7 7 5 3 3 5555555555555555555555555555555555555555 1 6 1 44 44 44 777777777777 8 7777 0 8 5555 0 0 8 0 999999999999 44444444444444444444444 0 5 0 0 0 0 99 11 1 0 3 99999 0 7 44 3 6 888 111 7 3 5 3 6 5 1 000 6 5 1 888 5 5 888888888 5 2 5 77 1 7 1 44 5 2 55555555 1 5 33 5 2 555 5 5 5 33333333333 3333333333333333 3 22 77 1 000000000000000000000 000 77 5 2 5 22 5 5 000 44444 66 3 555555555555 111 3 3 7777777777777777777 6 7 3 66 00 5 88 3 6 99999 3 111111111 77777 88 3 3 00 0 2 3 99 5 0 777 44444 22 1 99 5 77 1 5 99 22 5 77 0 3 3 5 5 5 55 777 777 0 3
lowQualScore : .. .. . . .. ... . .. .. . . . .... . . . .. . ... .. .. .. . ...... ... . . . . .. . . ...... .. . . .. .. .. . . . .. . ...... . . . . . . . ........................................ . . . .. .. .. ............ . .... . . .... . . . . ............ ....................... . . . . . . .. .. . . . ..... . . .. . . ... ... . . . . . . . ... . . . ... . . ......... . . . .. . . . .. . . ........ . . .. . . ... . . . ........... ................ . .. .. . ..................... ... .. . . . .. . . ... ..... .. . ............ ... . . ................... . . . .. .. . .. . . ..... . ......... ..... .. . . .. . . . .. . . ... ..... .. . .. . .. . . .. .. . .. . . . . . . .. ... ... . .
lowQualScore : 99 88 0 0 22 888 0 88 99 0 0 2 8888 4 4 8 22 4 444 00 11 11 4 888888 777 4 9 4 4 11 9 3 444444 11 0 4 33 22 55 0 0 0 77 7 444444 7 5 3 3 0 3 3 5555555555555555555555555555555555555555 0 7 0 55 77 77 999999999999 0 6666 8 0 8888 6 0 0 6 888888888888 88888888888888888888888 8 0 6 8 8 8 44 00 4 6 3 00000 8 3 77 3 7 777 777 3 5 0 5 7 7 4 000 3 0 4 999 7 7 333333333 0 0 0 11 4 1 7 44 7 7 66666666 4 0 66 0 5 444 0 0 0 88888888888 1111111111111111 2 77 55 0 999999999999999999999 000 44 7 3 7 00 7 7 000 33333 44 3 777777777777 777 5 2 8888888888888888888 7 3 2 00 33 7 33 3 7 55555 0 777777777 77777 33 2 8 88 0 5 2 22 7 1 333 22222 77 4 11 7 00 4 7 99 11 7 22 2 3 3 2 8 2 88 555 555 0 3
consensus : CTTTTGCCTA--TTTT--GCGCTATGTGACG-TTG-AA-T---ACTACTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-CAAAA-TAAACGCAA--TTTTT-GT-C-TATTCC-TTT--TTTT--CT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTA-TCT--AAAA-AAATTT-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTATTTCATTTCCATAAAAAA--CGT-GAT-TTTTTATTGTT-TA-AATCAGCGACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAGACGAATAAGACAGCCATGCGGAAAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAAAGAGTCATA---C--GTTCGCGCAGC---TT-----CC-A---T-----TCTGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAAAATGCATGCGATATCGTTGTACGA-TTATTATGAAATACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGATATTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAA-CTAATGGCGAATTATCATTGATGATTGTTCACTTAGAATTTTCTTAATCAATCGTTTA-TTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-TATCAACCTATTGTTAGAAAAAAA---GCAAATATATCGTTGTATAAATAC-TCTTTAA-CGGCA-CTT-GT------AGGAAAATATTCAAAATACAAA-ACGAACCCGAATATCCGTGTACTTGCGTTAATGCATTGTA-CGTTAATGCACTCTGGATATTTT-CGGAATTTTCTTA---ATCAATCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAGNCCATGGAA-CAATGAGAAACATTNTTTCCCGCACATGTAAATGC---A---C-NT-G---AATATT-TA-GACAAG-CCTATATCTATCTT-ACTG-TGTAG---TGTTCATA-----CAT-TTTCATCGTA-TTGAA-TCTCTA-A--TTTAATTAAGTT---AATTTTCACGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAA--TGGA-T-AAT-TG-AAGTACCATTGCTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCACATTTTCAG-GTTC-GCACGAATCTTT-GGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGA-TT-TTTCTCGCTGC-ACTGATTTGGAACTTAATAATGAAACGC-GCTA-ATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
Reference ( family-1935 ) : CTTTTGCCTA--TTTT--GCGCTATGTGACG-TTG-AA-T---ACTACTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-CAAAA-TAAACGCAA--TTTTT-GT-C-TATTCC-TTT--TTTT--CT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTA-TCT--AAAA-AAATTT-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTATTTCATTTCCATAAAAAA--CGT-GAT-TTTTTATTGTT-TA-AATCAGCGACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAGACGAATAAGACAGCCATGCGGAAAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAAAGAGTCATA------GTTCGCGCAGC---TT-----TC-----T-----TCTGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAAAATGCATGCGATATCGTTGTACGA-TTATTATGAAATACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGATATTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAA-CTAATGGCGAATTATCATTGATGATTGTTCACTTAGAATTTTCTTAATCAATCGTTTA-TTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-TATCAACCTATTGTTAGAAAAAAA---GCAAATATATCGTTGTATAAATAC-TCTTTAA-CGGCA-CTT-GT------AGGAAAATATTCAAAATACAAA-ACGAACCCGAATATCCGTGTACTTGCGTTAATGCATTGTA-CGTTAATGCACTCTGGATATTTT-CGGAATTTTCTTA---ATCAATCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAGNCCATGGAA-CAATGAGAAACATTNTTTCCCGCACA-------GC---A---C-CT-G---AATATT-TA-GACAAG-CCTATATCTATCTT-ACTG-TGTAG---TGTTCATA-----CAT-TTTCATCGTA-TTGAA-TCTCTA-A--TTTAATTAAGTT---AATTTTCACGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAA--TGGA-T-AAT-TG-AAGTACCATTGCTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCACATTTTCAG-GTTC-GCACGAATCTTT-GGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGA-TT-TTTCTCGCTGC-ACTGATTTGGAACTTAATAATGAAACGC-GCTA-ATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
gi|1 : CTTTTGCCTA--TTTTCCGCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-AATAA-TAAACGCAAATTTTTT-GTGT-TATTCCGTTT--TTTT--CT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTG-TCT--AAGATAGATTT-----A--CTCATATTTTAGATAATATTTTCGTGTATGAAAA-GTATTTCATTTCCATAAAGAAATCGT-GAT-TTTTTATTGTTATATAATCAGCGACCTGAAAAAGCCAATCG-TCGAAAACTAATGAAA---------CCAATTTTTAAACATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAG-CGAATAAG-CAGCCATACGGAAAA-AGCTATCACAATGTTTAATTAACGTTTAAAATATTGATTGCTAAAAAGAGTCATA------GTT-GTG-----------------------------TGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAACATGCATGCGATATCGTTGTACGA-TTATTATGAA-TACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGAT-TTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAAGCTAATGGCGAATTATCATTGATGATTATGCACTTAAAATTTTCTTAATCAATCGTTTAGTTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-CATCAACCTATTGCTAGAAAGAAATATATAAATATATAAT-ATATAAATACGTCTTTAA-CAGCA-CTT-GT------AGGAAAATATCCAAAATACAGAGACGAACCCGATTATCCGTGTACTTGTGTTAATGCATTGTAACATTAATTTACTCTGGATATTTT-CAGAATTTTCTTA---ATCAATCAGTGTTCTAA-TAC--AACTG-TATTTTG-ACCGTATTG---GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAAG---------------CAATGTAT-ATTCTTCGATGGTTAAGAGCCCATGGAA---ATGAGAAACATTTGGTCCCGCACA--------C---A---C-CT-G---AATATT-TA-GACAGG-CCTATAGCTATCTT-GCTG-TGTAG---TGTTCATA-----CATGTTTCATCGTAGTTGAAGTCTCTA-AAATTCAATTAAGTT---AATTTTCATGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAAAGTGGAGT-AATGTGGAAGTACCCTTACTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCATATTTTCAG-CCTC-GCACGAATCTTTGGGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGATTT-TTTCTCGATGC-ACTGATTTGGAACTTAATAATGAAACGCGGCTAGATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
gi|10 : TTTGCCTA--TTTT--GCGCTATGTCGCGATTG-AG-TTGAACTA-TTTA-CGTTACGTCACAG--CAGGCGACGTTTTACCCCTGTGTCCCGC-ACG-C-TCTGA-GAAGCAACGACG-CAAAA----ACGCA---TTTTG-GT-AATCTTCC-TTTATTTTT--CT-TATT-----AAAAA---GGTAATTA-CC-GACTTATATAA-TCA--AAAA-AAATTT-----A--ATCATATTTTAGATAATATTTT--TGTA-GAAAA-GTATTTCATTTCCAT-AATAA--CGT-AA--TTTTTATTGTT-TA-AATCA
gi|11 : ctcCTCTTGCCTAGGTTTT--GCGCTATGTGACG-TAT-AA-T---ACTACTTTA-CGTTACGTCACAGATC-GACGACGT---ACCCT-AT-CCTCGCGACG-CATCTGAAG--GCACTGACAACAAAA-TAA-CGCAA--TTTTT-GT-C--ATTTC-TTT--TTTTTTCT-TATT--------AAAAGCGTAATTA-CCCGACTTAT-TTAGTCT--AAAA-AAAATA-----A--CTCATATTTTAGATAATATTTTC-TGTGTGAAAA-GTATTTCATTTCCATAAAAAA--Ca
gi|12 : ctTTTGCCTA--TTTT--GCGCTATGTGACG-TTATAACT---A-TACTTTATCGTTACGTCA-AG-ACAGGCGACGTT--ACTCTTGT-CCTCGC-AC-GCATCT---GAAGCACTGACG-C-AAA-T-AACGCAA--TTTTT-GT-C-TTTCCT-TTT--TTTT--CTGTATTTGAAAAAAAAAAGGCTAATTA-CCGGAGTTAT-TTA-TCT----AA-AAATTA-----A--CTCATATTTTAGATAATATTTTC-TGT
gi|13 : cAAGATGCACA-TTTCAGCGTTC-GCACAAATGTT
gi|13 : ACAAATGTTCAAA-GGACA-TGTCA-GATAGCATGA-TT-TT-CTCACTGC-ACTGATTAAGAACTTA-TAATCAAACAC-GCTA-ATGCTTGACAAAAcaaaggacatgtcagatagcatgattttctcactgcactgattaagaacttataatcaaacacgctaatgcttgacaaaaagcat
gi|14 : aagatgcacatttcagcgttcgc-TATTTTGCACCGTATTG--CGGTCAGAAAA-TCGACTCCCTCTAGTA-TCCAATAAATGCAATCAACA-----------AAAAAAAACAACAAAAAACCCCGATGTATTATTCCTCGATGGTTGAGAAGCagcat
gi|15 : TATTTTACATAATATTTTC-TGTATGAAAA-GAGATTCATTTCCATAAAAAA--CG--GAA-TTTTTATTGTT-TA-AATCAGC-ACATGAAAAAGC--ATCG-TCGAAAACTAATGAAAA
gi|16 : TC-GCACGAATCTT---GAACAGTGCACGGGCTT------------------ACAATGTCA-GAAAGCATGA-TT-TT-CTCACTGC-ACTGATATGGAACTTG-CAATGAAACGC-GCTA-ATGCTTGACAAAA
gi|2 : CTTTTGCCTA--TTTTCCGCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-AATAA-TAAACGCAAATTTTTT-GTGT-TATTCCGTTT--TTTT--CT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTG-TCT--AAGATAGATTT-----A--CTCATATTTTAGATAATATTTTCGTGTATGAAAA-GTATTTCATTTCCATAAAGAAATCGT-GAT-TTTTTATTGTTATATAATCAGCGACCTGAAAAAGCCAATCG-TCGAAAACTAATGAAA---------CCAATTTTTAAACATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAG-CGAATAAG-CAGCCATACGGAAAA-AGCTATCACAATGTTTAATTAACGTTTAAAATATTGATTGCTAAAAAGAGTCATA------GTT-GTG-----------------------------TGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAACATGCATGCGATATCGTTGTACGA-TTATTATGAA-TACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGAT-TTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAAGCTAATGGCGAATTATCATTGATGATTATGCACTTAAAATTTTCTTAATCAATCGTTTAGTTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-CATCAACCTATTGCTAGAAAGAAATATATAAATATATAAT-ATATAAATACGTCTTTAA-CAGCA-CTT-GT------AGGAAAATATCCAAAATACAGAGACGAACCCGATTATCCGTGTACTTGTGTTAATGCATTGTAACATTAATTTACTCTGGATATTTT-CAGAATTTTCTTA---ATCAATCAGTGTTCTAA-TAC--AACTG-TATTTTG-ACCGTATTG---GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAAG---------------CAATGTAT-ATTCTTCGATGGTTAAGAGCCCATGGAA---ATGAGAAACATTTGGTCCCGCACA--------C---A---C-CT-G---AATATT-TA-GACAGG-CCTATAGCTATCTT-GCTG-TGTAG---TGTTCATA-----CATGTTTCATCGTAGTTGAAGTCTCTA-AAATTCAATTAAGTT---AATTTTCATGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAAAGTGGAGT-AATGTGGAAGTACCCTTACTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCATATTTTCAG-CCTC-GCACGAATCTTTGGGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGATTT-TTTCTCGATGC-ACTGATTTGGAACTTAATAATGAAACGCGGCTAGATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAGa
gi|3 : TCTGCCTA--TTTT--GCGCTATGTGACG-TTG-A--T---ACTATTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACG-CATCTGAAG---CACTGACG-CAAAAATATACGCAA--TTTTTTGT-C-TATTC--TGT--TTTT--CG-TATT-----GAAAA---GGTAAATATCC-GACTTAT-TTA-TCT--AAAA-A--TTT-----AACTTCATATTTTAGAATATATTTTC-TGTATGAAAAAGTGTTTCATTTCCATAAAAAA--CGTAGATATTTTTGTTGGT-TA-AAT-AGCACCTTGAAAAAGC--ATCGGTCGAAAACTAATGAAAACATGAAAACCAATTTCTAAAAATCCGGATTTTTT-CACCACGAAGAGACGAAAGTTATTAAAATGAC-TTA-GAAGACGAATAAGACAGCCATGCGGAAAACAATTATC-CAAT-TTTAATTATCTTTTAAA----TGTTTGTTAAAAGAGGGCATAAGTC--GTTCGCGCAGC---TTATTTCTC-----TGACGTTTTGGATTGTCGG-AATGA---TTTTTTT-TTAAATAAAAAAATAATGATAT-TTTTT---ATGTTTTGC----AAAAAATGCATGCGATATCGTT-TACGAATTATTATGAAATACTAATATTATTTCCATAGACTTTTCTCAAAAAT---------------ACATGA-ATATTATCAA-CAGA-TG--TATTTGACGGTAAATAATTAT-TAA-CTA-TG-CAAATTATCATTAATGATTGTTC-CTTAGAATTTTCT-AATCA-TCATTTA-TTA-T-TTC---TAACGTCAA-TT-TAAAACTATGAATATCAAC-TATTGTTAGAAAAAAA---GCAGATATATTGTTGTATAAATAC-TCTTTAAATGGCAACTT-TT------AG-AAAATATTCAAA-TACAAA--CGAACCCAAATATCCGTGTACTTGCGTCAATGTATTGTATCGTTAATGCACTCTGAATATTTTTCGGAATTTTCTTACTTATCA-TCATT-TTCTAAAT-CTAAACTGGTATTTTGCACCGTATTG--TGGTCAGAAAAAT-GACTCACTCTAGCAATCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTAT-CTTCGATGAT-GAAATTCCATGGAAGCAATGAGAAACATGTTTCCTCGCACATGTAAATGC---AAAAC-ATCG---AATATT--A-GAAAAG-CCTATATATATCTT-ACTG-TGTAAATCTGTTCATATCATACAT-TTCAATCGTA-TTAAA-T---------------TAAGTT---AATTT-CA-GT-A--T--G--------CTTACACAAA-TCTTAAA-TAG-ATGAAACATAATTTC-CAAA--TGGA-TTAGT-TG-TAGTACCATTGCTGAATAACTCGTAAAATAGAAATACTAA-------TTCTAAAA---A-TTCT-TTTT-CTATATTTT--ATTATAACAT-TGAA-GAT------------------GCACA----TTT-----CAGCGTTCG------CACAAATGTTCAAA-GGACA-TGTCA-GATAGCATGA-TT-T--CTCACTGC-ACTGATTAAGAACTTA-TAATCAAACAC-GCTA-ATGCTTGACAAAAAAAGCATGT-CGA-TGTGAAA--CATTGTA-GTTGTACTACTAATTTTATGGGGGTGG-TGGGGGGGAAACTTCACAAAA
gi|4 : ttggcTTTGCCTA--TTTT--GCGCTATGTGACA-TTG-A--T---ACTACTTTA-CCTTACGTTACAGA-CAGGCGACGTT--ACCCTTGT-CCTCGC-ACG-CATCTGA-----------CG-CAAAA-TAG-CTCAA--TTTTT-GT-T-TATTCC-TTT--TT----CT-TA----------------ATAATTA-CC-GACTTAT-TTA-TCTTTAAAA-AAAC-------A--CTCATATTTTAGATAATATTTTT-TGTATGAAAA-GTATTTAATTTCCATAAAAAAAACGT-AAT-TTT--ATTGTT-TA-AATCAGC-ACATGAAAAAGA--ATCG-TCGAAAAGTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGTTTTTTTTCAC-ACAAAGAGAGGAACGTTATTAAAATGACATT-AGAAGACGAATAAGACAGTCATGCGGAAAA-AGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAGAGAGTCATGTTTT--GTTAGCGCA-C---TT-----CTGACA-T-----TCTTGA-TGTC-GAAATGAAAATTT--GTA-TAAA-------AT---GACAT-TTTT----ATGTTT-GC-----AAAAATGCATGCGATATCATT-TACTA-TTATTATGAAATATTAATGTT-------TA---TTTCC------ATGAACTATTTCAAAATACATGA-ATATTATC-AACAG-GTG--TTTTTGACGGTAAAATAAT-TATAA-CT-AT-GCGAATTATCATTCAT-ATTGTTCACTTAGAATTTTTTTTATC-ATCGTTTA-TTA-T-T-CTTATAACGTC-AATT-CATAA-TATGA-TCTCAA-CTATTGTGAG-AAAAAA---TCAAATACATCGTTGTATAAATAC-TCTTTAA-GAGCA-CTT-GT------A-GATACTATTC-AAATAC-AA-ACAATCTCAAAT---TGTGTACTTGCGTTAATGCATTGTA-CGTTAATGCACTCT-GATAGTTT-CATCATTTTCTTA-----CCATCAGT-TTCTAAATACA-AACTG-AA--TTGCACCGTATTGGTTGGTCAGAAAC-T-GACTCCCTCTAGCA-TCCAATAAACGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTTAATGGTTGAGGGGCCATGGAA-CAATAAGAAAAA-TATTTCCCGCACAT------GT---A---A-AT-GCAAAACACTAAA-GACA-----TGTATATATCTT-AC---TGTAG---TGTTCATG-----CA--TTTCATCGTA-TTGAA------------TTAATTAAGTTTTAAAATTTCTC-T---AT--A--------TTTACACAAA-TCTT-AAATA-AATGAAATATA---------------A-T-AAT-TG-AAGTATCATTGCCGAATAACTCGTAAAAAAGAAATACT-A------ATTCTAAAA---A---CTATTTTTCTATATTCT--ATTGTAGCAT-TGAAATATGCACATTTCAGG-GTTC-GCACGGATCTT---GAACAGTGCACGGGCTT-GA-CACTTCTC-AAAGGACA-TGTC-AGAGGGC-CGG-AC-TTTCTCAATGC-ACTGATTTGGAACTTAA-ANNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAT----------TAATTTCATGGG---AGTAAGAG
gi|5 : tcTTTGCCTA--TTTT--GTGCTATGTGACG-TTG-A--T---ACTACTTTA-CGTTACGTCACAGA-CAGGCGACGTT--ACCCTTGT-CCTCAC-ACG-CATATGAAA---CAATGACG-CAAAC-TAA-CGCAA--TTTTT-GT-C-TATT--------TTTT--TT-TATC-----AAAAA---GATAATTA-CC-GACTTAT-TTA-TCT--A-------TTTTTTAAA--CTCTTATTTCAGATCATATTTTT-GGAATGAAAA-GTATTTCATTTCCATAAAAAA--CA---AT-TATTTATTGTT-TA-AATCAG-AACCAGAAAAAGC--ATCG-TCGAAAACTAATGA--------AAACCAATTTTTAAAAATCCGGATTGTTTTCAT-ATGAAGAGACGAAACTTATTAAAATGACATT-AGAAGACGAATAAAATAGGTATGCGG-AAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCCAAAAAGACTCGTGTGGTTTGTTTGCGCAAC---TT-----CTGACG-T-----TCTGGATTGT-GGGAATT--ACTTTTTCTA-TAAA-------AT-----TATATTTTTTTAA-GTTT-GC----AAAAATTGTATGCGATATCGTT-TACGA-TTATTATGAAATAGCAATGTT-------TA---TTTCC------ATGG-------------AC------TATT-TCAAAATGCATGAATATTTGACGGTGAAATAAT-TATAA-AT-AT-GCGAATTATCATCG-TTATTGTTCACTTATAATTTTC-TAATC-ATGATTTA-TTATT-C-C---TAACGTT-AATT-TATGA-TATAA-TATCAACC-ATTGTTAGAAAAAAC---GCAAATATATTGTTGTATAAATAC-TCTTTAA-AAGCA-CTTCATGACTTGAAGAAACAATTC-AAATAC-AA-TCGAACTCAAATATTCTTGTACTTTCGTTAAT-----------TTAATG--CTCT-----TCT------ATTTTTTCA---AC--ATCAGT-TTCTAAATAT--AACTG-TATTTTGCATCGTATTG--CGGTCAGAAAA-T-GTCTCTCTCTAGCA-TCCAAGAAATTCAATCGACA-----------AAAAA----------------CAATGTATTATTTTTCGATGccg
gi|6 : tcATGA-TATCAAC-TATTGTTAGAAAAAAA---GCAGATATATTGTTGTATAAATAC-TCTTTAA-TGGCA-CTT-TT------AG-AAAATATTCAAA-TACAAA--CGAACCCAAATATCCGTGTACTTGCGTCAATGTATTGTA-CGTTAATGCACTCTG-ATATTTT-CGGAATTTTCTTA----TCA-TCATT-TTCTAAATAC--AA-TG-TATTTTGCACCGTATTG--TGGTCAGAAAA-T-GACTCACTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTAATCTTCGATGGATGA-ATTCCATGGAA-CAATGAGAAACATTGTTTCCTGCACATGTAAATGCAAAA---C-ATCG---AATATT-TA-GAAAAG-CCTATATATATCTT-ACTG-TGTAAATCTGTTCATA-----CA--TTTCATCGTA------------------TTAATTAAGTT---AA-TTTCA-GT---AT--G--------CTTACACAAA-TCTT-AAATA-GATGAAACATAA-TTTCCAAA--TGGA-T-AAT-TG-TAGTACCATTGCTGAATAACTCGTAAAATAGAAATACT-A------ATTCTAAAA---A-TTC--TTTTTCTA
gi|7 : TATAA-CTA-TG-CGAATTATCATTGAT-ATTGTTCACTTAGAATTTTCT-AATCA-TCGTTCA-TTA-TTC-C---TAACGTCAATTTGTA--A-TATCA-TATCAAC-TATTGTTAGAAAAAAA---GCAAATATATTGTTGTATAAATAC-TCTTGAA-CAGCA-CTT-GT------AG-AAAGTATTCAAA-TACAAA--CAAACCCAAATATCCGTGTACTTGCATTAATGCATTGTA-CGTTAATGCACTCTG-ATATTTT-CAGAATTTTCCTC----TCA-TCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCATCTAGCA-TCCAATAAATGCAATCGACAAAAAAACCCCTAAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAAGCCATGGAA-AAGTGAGAAACGTTCTTTCCCGCACAGGTAAATGCAAAA---CACT-G---AATATT-TA-GACGAT-CCTATAGCTATCTT-ACTG-TGCAG---TGTTTATA-----TAT-
gi|8 : taatCG-CAAAA-TAA-CGCAA--TTTTT-GT-C-TATTCC-TGT--TTTT--CG-TATT-----GAAAA---GGTAAATA-CC-GACTTAT-TTA-TCT--AAAA-ATTTTA-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTGTTTCATTTCCATAAAAAA--CGT-AA--TTTTTGTTGGT-TA-AATCAGC-ACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTCTAAAAATCCGGA-TTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATT-AGAAGACGAATAAGACAGCCATGCGGAAAACAATTATC-CAAT-TTTAATTATCTTTTAAAATAT---TTGTTAAAAAGAGGCATAAC----GTTCGCGCAGCTTATT-----TCTGACGT-----TCTGGATTGTC-GGAATG---ATTTTTTT-TTAAA-------a
gi|9 : GCAAA-------AC---A---C--T-G---AATATT-TAAGACAAGGCCTATGTCTTTCTTGACTGCTGTAG---TGTTCATA-----CAT-T--CATCGTA-TTGAA-TCTCTAGA--TTTAATTAAGTT---GATG---ACGTTAAATTCAGTTGCTTCCTTACACAAACTCTTAA------------------TTTTCAAA--TAGA-T-AA---------------GTTGAGTAACTCGTAAAAAAG-AAAACCGATCCCTGGCTTTAAAACACAGGACC-ATT----GTATT-----------CAT-TGAAA-ATGCACATTTTCAG-GTTCCGCACTAATTCTT-GAACCAGTGCACGGGCTTCTTTCAA-TTTCATAA-GACA-TGTC-AGAGGGCATGA-TTGTGTTCCACTGCAATTGATTTCGAACTTAtaa
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 11 11 1 11 2 1111 1 11 111 111111 222 111111 11 11 1 1 1 11 222222 1 1 1 1 1111111111111111111111111111111111111 11 11 222222222222 3333 2 1 222222222222 55555555555555555555555 1 1 11 1 1 11111 1 11 1 111 1 1 222 1 111111111 1 11111 111 11 22222222 1 11 111 22222222222 4444444444444444 111 333333333333 222 11111 11 1 666666666666 111 3333333333333333333 11 11 11 1 222 222222222 11111 22 2 222 11111 11 1 11 1 1 111 111 1 1
lowQualScore : 66 33 5 5 66 888 5 22 66 5 5 1 6666 4 4 2 22 4 111 99 66 66 4 444444 333 4 8 4 4 66 8 5 333333 66 8 4 88 88 11 0 0 6 55 5 222222 6 5 7 7 5 3 3 0000000000000000000000000000000000000 1 6 1 44 44 44 777777777777 8 7777 0 8 5555 0 0 8 0 999999999999 44444444444444444444444 0 5 0 0 0 0 99 11 1 0 3 99999 0 7 44 3 6 888 111 7 3 5 3 6 5 1 000 6 5 1 888 5 5 888888888 5 2 88888 1 111 1 44 5 2 55555555 1 5 33 5 2 555 5 5 5 33333333333 3333333333333333 3 22 666 1 8 4 888888888888 77 5 2 5 22 5 5 000 44444 66 3 555555555555 111 3 3 7777777777777777777 6 7 3 66 00 5 88 3 6 111 3 3 111111111 77777 88 3 3 00 0 2 3 99 5 0 777 44444 22 1 99 5 77 1 5 99 22 5 77 0 3 3 5 5 5 55 777 777 0 3
lowQualScore : .. .. . . .. ... . .. .. . . . .... . . . .. . ... .. .. .. . ...... ... . . . . .. . . ...... .. . . .. .. .. . . . .. . ...... . . . . . . . ..................................... . . . .. .. .. ............ . .... . . .... . . . . ............ ....................... . . . . . . .. .. . . . ..... . . .. . . ... ... . . . . . . . ... . . . ... . . ......... . . ..... . ... . .. . . ........ . . .. . . ... . . . ........... ................ . .. ... . . . ............ .. . . . .. . . ... ..... .. . ............ ... . . ................... . . . .. .. . .. . . ... . . ......... ..... .. . . .. . . . .. . . ... ..... .. . .. . .. . . .. .. . .. . . . . . . .. ... ... . .
lowQualScore : 99 88 0 0 22 888 0 88 99 0 0 2 8888 4 4 8 22 4 444 00 11 11 4 888888 777 4 9 4 4 11 9 3 444444 11 0 4 33 22 55 0 0 0 77 7 444444 7 5 3 3 0 3 3 0000000000000000000000000000000000000 0 7 0 55 77 77 999999999999 0 6666 8 0 8888 6 0 0 6 888888888888 88888888888888888888888 8 0 6 8 8 8 44 00 4 6 3 00000 8 3 77 3 7 777 777 3 5 0 5 7 7 4 000 3 0 4 999 7 7 333333333 0 0 44444 4 666 7 44 7 7 66666666 4 0 66 0 5 444 0 0 0 88888888888 1111111111111111 2 77 555 0 4 9 333333333333 44 7 3 7 00 7 7 000 33333 44 3 777777777777 777 5 2 8888888888888888888 7 3 2 00 33 7 33 3 7 777 7 0 777777777 77777 33 2 8 88 0 5 2 22 7 1 333 22222 77 4 11 7 00 4 7 99 11 7 22 2 3 3 2 8 2 88 555 555 0 3
consensus : CTTTTGCCTA--TTTT--GCGCTATGTGACG-TTG-AA-T---ACTACTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-CAAAA-TAAACGCAA--TTTTT-GT-C-TATTCC-TTT--TTTT--CT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTA-TCT--AAAA-AAATTT-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTATTTCATTTCCATAAAAAA--CGT-GAT-TTTTTATTGTT-TA-AATCAGCGACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAGACGAATAAGACAGCCATGCGGAAAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAAAGAGTCAT-A-----CGTTCGCGCAGC----TT------CTGACGTTCTGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAAAATGCATGCGATATCGTTGTACGA-TTATTATGAAATACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGATATTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAA-CTAATGGCGAATTATCATTGATGATTGTTCACTTAGAATTTTCTTAATCAATCGTTTA-TTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-TATCAACCTATTGTTAGAAAAAAA---GCAAATATATCGTTGTATAAATAC-TCTTTAA-CGGCA-CTT-GT------AGGAAAATATTCAAAATACA-AAACGAACCCGAATATCCGTGTACTTGCGTTAATGCATTGT-A-CGTTAATGCACTCTGGATATTTT-CGGAATTTTCTTA---ATCAATCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAGNCCATGGAA-CAATGAGAAACATTNTTTCCCGCACATGTAAATGC---A---C-CT-GAATATT-TA-GACAAG-CCTATATCTATCTT-ACTG-TGTAG---TGTTCATA-----CAT-TTTCATCGTA-TTGAA-TCTCT--A-ATTTAATTAAGTT---AATTTTCACGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAA--TGGA-T-AAT-T-GAAGTACCATTGCTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCACATTTTCAG-GTTC-GCACGAATCTTT-GGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGA-TT-TTTCTCGCTGC-ACTGATTTGGAACTTAATAATGAAACGC-GCTA-ATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
Reference ( family-1935 ) : CTTTTGCCTA--TTTT--GCGCTATGTGACG-TTG-AA-T---ACTACTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-CAAAA-TAAACGCAA--TTTTT-GT-C-TATTCC-TTT--TTTT--CT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTA-TCT--AAAA-AAATTT-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTATTTCATTTCCATAAAAAA--CGT-GAT-TTTTTATTGTT-TA-AATCAGCGACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAGACGAATAAGACAGCCATGCGGAAAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAAAGAGTCAT-A-----CGTTCGCGCAGC----TT------C---CATTCTGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAAAATGCATGCGATATCGTTGTACGA-TTATTATGAAATACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGATATTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAA-CTAATGGCGAATTATCATTGATGATTGTTCACTTAGAATTTTCTTAATCAATCGTTTA-TTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-TATCAACCTATTGTTAGAAAAAAA---GCAAATATATCGTTGTATAAATAC-TCTTTAA-CGGCA-CTT-GT------AGGAAAATATTCAAAATACA-AAACGAACCCGAATATCCGTGTACTTGCGTTAATGCATTGT-A-CGTTAATGCACTCTGGATATTTT-CGGAATTTTCTTA---ATCAATCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAGNCCATGGAA-CAATGAGAAACATTNTTTCCCGCACATGTAAATGC---A---C-NT-GAATATT-TA-GACAAG-CCTATATCTATCTT-ACTG-TGTAG---TGTTCATA-----CAT-TTTCATCGTA-TTGAA-TCTCT--A-ATTTAATTAAGTT---AATTTTCACGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAA--TGGA-T-AAT-T-GAAGTACCATTGCTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCACATTTTCAG-GTTC-GCACGAATCTTT-GGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGA-TT-TTTCTCGCTGC-ACTGATTTGGAACTTAATAATGAAACGC-GCTA-ATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
gi|1 : CTTTTGCCTA--TTTTCCGCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-AATAA-TAAACGCAAATTTTTT-GTGT-TATTCCGTTT--TTTT--CT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTG-TCT--AAGATAGATTT-----A--CTCATATTTTAGATAATATTTTCGTGTATGAAAA-GTATTTCATTTCCATAAAGAAATCGT-GAT-TTTTTATTGTTATATAATCAGCGACCTGAAAAAGCCAATCG-TCGAAAACTAATGAAA---------CCAATTTTTAAACATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAG-CGAATAAG-CAGCCATACGGAAAA-AGCTATCACAATGTTTAATTAACGTTTAAAATATTGATTGCTAAAAAGAGTCAT-A------GTT-GTG-------------------------TGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAACATGCATGCGATATCGTTGTACGA-TTATTATGAA-TACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGAT-TTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAAGCTAATGGCGAATTATCATTGATGATTATGCACTTAAAATTTTCTTAATCAATCGTTTAGTTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-CATCAACCTATTGCTAGAAAGAAATATATAAATATATAAT-ATATAAATACGTCTTTAA-CAGCA-CTT-GT------AGGAAAATATCCAAAATACAGAGACGAACCCGATTATCCGTGTACTTGTGTTAATGCATTGTAA-CATTAATTTACTCTGGATATTTT-CAGAATTTTCTTA---ATCAATCAGTGTTCT-AATAC--AACTG-TATTTTG-ACCGTATTG---GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAAG---------------CAATGTA-TATTCTTCGATGGTTAAGAGCCCATGGA---AATGAGAAACATTTGGTCCCGCACA--------C---A---C-CT-GAATATT-TA-GACAGG-CCTATAGCTATCTT-GCTG-TGTAG---TGTTCATA-----CATGTTTCATCGTAGTTGAAGTCTCTAAA-ATTCAATTAAGTT---AATTTTCATGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAAAGTGGAGT-AATGTGGAAGTACCCTTACTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCATATTTTCAG-CCTC-GCACGAATCTTTGGGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGATTT-TTTCTCGATGC-ACTGATTTGGAACTTAATAATGAAACGCGGCTAGATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
gi|10 : TTTGCCTA--TTTT--GCGCTATGTCGCGATTG-AG-TTGAACTA-TTTA-CGTTACGTCACAG--CAGGCGACGTTTTACCCCTGTGTCCCGC-ACG-C-TCTGA-GAAGCAACGACG-CAAAA----ACGCA---TTTTG-GT-AATCTTCC-TTTATTTTT--CT-TATT-----AAAAA---GGTAATTA-CC-GACTTATATAA-TCA--AAAA-AAATTT-----A--ATCATATTTTAGATAATATTTT--TGTA-GAAAA-GTATTTCATTTCCAT-AATAA--CGT-AA--TTTTTATTGTT-TA-AATCA
gi|11 : ctcCTCTTGCCTAGGTTTT--GCGCTATGTGACG-TAT-AA-T---ACTACTTTA-CGTTACGTCACAGATC-GACGACGT---ACCCT-AT-CCTCGCGACG-CATCTGAAG--GCACTGACAACAAAA-TAA-CGCAA--TTTTT-GT-C--ATTTC-TTT--TTTTTTCT-TATT--------AAAAGCGTAATTA-CCCGACTTAT-TTAGTCT--AAAA-AAAATA-----A--CTCATATTTTAGATAATATTTTC-TGTGTGAAAA-GTATTTCATTTCCATAAAAAA--Ca
gi|12 : ctTTTGCCTA--TTTT--GCGCTATGTGACG-TTATAACT---A-TACTTTATCGTTACGTCA-AG-ACAGGCGACGTT--ACTCTTGT-CCTCGC-AC-GCATCT---GAAGCACTGACG-C-AAA-T-AACGCAA--TTTTT-GT-C-TTTCCT-TTT--TTTT--CTGTATTTGAAAAAAAAAAGGCTAATTA-CCGGAGTTAT-TTA-TCT----AA-AAATTA-----A--CTCATATTTTAGATAATATTTTC-TGT
gi|13 : cAAGATGCACA-TTTCAGCGTTC-GCACAAATGTT
gi|13 : ACAAATGTTCAAA-GGACA-TGTCA-GATAGCATGA-TT-TT-CTCACTGC-ACTGATTAAGAACTTA-TAATCAAACAC-GCTA-ATGCTTGACAAAAcaaaggacatgtcagatagcatgattttctcactgcactgattaagaacttataatcaaacacgctaatgcttgacaaaaagcat
gi|14 : aagatgcacatttcagcgttcgc-TATTTTGCACCGTATTG--CGGTCAGAAAA-TCGACTCCCTCTAGTA-TCCAATAAATGCAATCAACA-----------AAAAAAAACAACAAAAAACCCCGATGTATTATTCCTCGATGGTTGAGAAGCagcat
gi|15 : TATTTTACATAATATTTTC-TGTATGAAAA-GAGATTCATTTCCATAAAAAA--CG--GAA-TTTTTATTGTT-TA-AATCAGC-ACATGAAAAAGC--ATCG-TCGAAAACTAATGAAAA
gi|16 : TC-GCACGAATCTT---GAACAGTGCACGGGCTT------------------ACAATGTCA-GAAAGCATGA-TT-TT-CTCACTGC-ACTGATATGGAACTTG-CAATGAAACGC-GCTA-ATGCTTGACAAAA
gi|2 : CTTTTGCCTA--TTTTCCGCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-AATAA-TAAACGCAAATTTTTT-GTGT-TATTCCGTTT--TTTT--CT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTG-TCT--AAGATAGATTT-----A--CTCATATTTTAGATAATATTTTCGTGTATGAAAA-GTATTTCATTTCCATAAAGAAATCGT-GAT-TTTTTATTGTTATATAATCAGCGACCTGAAAAAGCCAATCG-TCGAAAACTAATGAAA---------CCAATTTTTAAACATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAG-CGAATAAG-CAGCCATACGGAAAA-AGCTATCACAATGTTTAATTAACGTTTAAAATATTGATTGCTAAAAAGAGTCAT-A------GTT-GTG-------------------------TGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAACATGCATGCGATATCGTTGTACGA-TTATTATGAA-TACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGAT-TTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAAGCTAATGGCGAATTATCATTGATGATTATGCACTTAAAATTTTCTTAATCAATCGTTTAGTTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-CATCAACCTATTGCTAGAAAGAAATATATAAATATATAAT-ATATAAATACGTCTTTAA-CAGCA-CTT-GT------AGGAAAATATCCAAAATACAGAGACGAACCCGATTATCCGTGTACTTGTGTTAATGCATTGTAA-CATTAATTTACTCTGGATATTTT-CAGAATTTTCTTA---ATCAATCAGTGTTCT-AATAC--AACTG-TATTTTG-ACCGTATTG---GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAAG---------------CAATGTA-TATTCTTCGATGGTTAAGAGCCCATGGA---AATGAGAAACATTTGGTCCCGCACA--------C---A---C-CT-GAATATT-TA-GACAGG-CCTATAGCTATCTT-GCTG-TGTAG---TGTTCATA-----CATGTTTCATCGTAGTTGAAGTCTCTAAA-ATTCAATTAAGTT---AATTTTCATGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAAAGTGGAGT-AATGTGGAAGTACCCTTACTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCATATTTTCAG-CCTC-GCACGAATCTTTGGGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGATTT-TTTCTCGATGC-ACTGATTTGGAACTTAATAATGAAACGCGGCTAGATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAGa
gi|3 : TCTGCCTA--TTTT--GCGCTATGTGACG-TTG-A--T---ACTATTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACG-CATCTGAAG---CACTGACG-CAAAAATATACGCAA--TTTTTTGT-C-TATTC--TGT--TTTT--CG-TATT-----GAAAA---GGTAAATATCC-GACTTAT-TTA-TCT--AAAA-A--TTT-----AACTTCATATTTTAGAATATATTTTC-TGTATGAAAAAGTGTTTCATTTCCATAAAAAA--CGTAGATATTTTTGTTGGT-TA-AAT-AGCACCTTGAAAAAGC--ATCGGTCGAAAACTAATGAAAACATGAAAACCAATTTCTAAAAATCCGGATTTTTT-CACCACGAAGAGACGAAAGTTATTAAAATGAC-TTA-GAAGACGAATAAGACAGCCATGCGGAAAACAATTATC-CAAT-TTTAATTATCTTTTAAA----TGTTTGTTAAAAGAGGGCAT-AAGT--CGTTCGCGCAGC----TTATTTCTCTGACGTTTTGGATTGTCGG-AATGA---TTTTTTT-TTAAATAAAAAAATAATGATAT-TTTTT---ATGTTTTGC----AAAAAATGCATGCGATATCGTT-TACGAATTATTATGAAATACTAATATTATTTCCATAGACTTTTCTCAAAAAT---------------ACATGA-ATATTATCAA-CAGA-TG--TATTTGACGGTAAATAATTAT-TAA-CTA-TG-CAAATTATCATTAATGATTGTTC-CTTAGAATTTTCT-AATCA-TCATTTA-TTA-T-TTC---TAACGTCAA-TT-TAAAACTATGAATATCAAC-TATTGTTAGAAAAAAA---GCAGATATATTGTTGTATAAATAC-TCTTTAAATGGCAACTT-TT------AG-AAAATATTCAAA-TACA-AA-CGAACCCAAATATCCGTGTACTTGCGTCAATGTATTGT-ATCGTTAATGCACTCTGAATATTTTTCGGAATTTTCTTACTTATCA-TCATT-TTCTAAAT-CTAAACTGGTATTTTGCACCGTATTG--TGGTCAGAAAAAT-GACTCACTCTAGCAATCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTAT-CTTCGATGAT-GAAATTCCATGGAAGCAATGAGAAACATGTTTCCTCGCACATGTAAATGC---AAAAC-ATCGAATATT--A-GAAAAG-CCTATATATATCTT-ACTG-TGTAAATCTGTTCATATCATACAT-TTCAATCGTA-TTAAA-T---------------TAAGTT---AATTT-CA-GT-A--T--G--------CTTACACAAA-TCTTAAA-TAG-ATGAAACATAATTTC-CAAA--TGGA-TTAGT-T-GTAGTACCATTGCTGAATAACTCGTAAAATAGAAATACTAA-------TTCTAAAA---A-TTCT-TTTT-CTATATTTT--ATTATAACAT-TGAA-GAT------------------GCACA----TTT-----CAGCGTTCG------CACAAATGTTCAAA-GGACA-TGTCA-GATAGCATGA-TT-T--CTCACTGC-ACTGATTAAGAACTTA-TAATCAAACAC-GCTA-ATGCTTGACAAAAAAAGCATGT-CGA-TGTGAAA--CATTGTA-GTTGTACTACTAATTTTATGGGGGTGG-TGGGGGGGAAACTTCACAAAA
gi|4 : ttggcTTTGCCTA--TTTT--GCGCTATGTGACA-TTG-A--T---ACTACTTTA-CCTTACGTTACAGA-CAGGCGACGTT--ACCCTTGT-CCTCGC-ACG-CATCTGA-----------CG-CAAAA-TAG-CTCAA--TTTTT-GT-T-TATTCC-TTT--TT----CT-TA----------------ATAATTA-CC-GACTTAT-TTA-TCTTTAAAA-AAAC-------A--CTCATATTTTAGATAATATTTTT-TGTATGAAAA-GTATTTAATTTCCATAAAAAAAACGT-AAT-TTT--ATTGTT-TA-AATCAGC-ACATGAAAAAGA--ATCG-TCGAAAAGTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGTTTTTTTTCAC-ACAAAGAGAGGAACGTTATTAAAATGACATT-AGAAGACGAATAAGACAGTCATGCGGAAAA-AGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAGAGAGTCAT-GTTT--TGTTAGCGCA-C----TT------CTGACATTCTTGA-TGTC-GAAATGAAAATTT--GTA-TAAA-------AT---GACAT-TTTT----ATGTTT-GC-----AAAAATGCATGCGATATCATT-TACTA-TTATTATGAAATATTAATGTT-------TA---TTTCC------ATGAACTATTTCAAAATACATGA-ATATTATC-AACAG-GTG--TTTTTGACGGTAAAATAAT-TATAA-CT-AT-GCGAATTATCATTCAT-ATTGTTCACTTAGAATTTTTTTTATC-ATCGTTTA-TTA-T-T-CTTATAACGTC-AATT-CATAA-TATGA-TCTCAA-CTATTGTGAG-AAAAAA---TCAAATACATCGTTGTATAAATAC-TCTTTAA-GAGCA-CTT-GT------A-GATACTATTC-AAATAC--AAACAATCTCAAAT---TGTGTACTTGCGTTAATGCATTGT-A-CGTTAATGCACTCT-GATAGTTT-CATCATTTTCTTA-----CCATCAGT-TTCTAAATACA-AACTG-AA--TTGCACCGTATTGGTTGGTCAGAAAC-T-GACTCCCTCTAGCA-TCCAATAAACGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTTAATGGTTGAGGGGCCATGGAA-CAATAAGAAAAA-TATTTCCCGCACATGTAAATGC---A--------AAACACTAAA-GACA-----TGTATATATCTT-AC---TGTAG---TGTTCATG-----CA--TTTCATCGTA-TTGAA------------TTAATTAAGTTTTAAAATTTCTC-T---AT--A--------TTTACACAAA-TCTT-AAATA-AATGAAATATA---------------A-T-AAT-T-GAAGTATCATTGCCGAATAACTCGTAAAAAAGAAATACT-A------ATTCTAAAA---A---CTATTTTTCTATATTCT--ATTGTAGCAT-TGAAATATGCACATTTCAGG-GTTC-GCACGGATCTT---GAACAGTGCACGGGCTT-GA-CACTTCTC-AAAGGACA-TGTC-AGAGGGC-CGG-AC-TTTCTCAATGC-ACTGATTTGGAACTTAA-ANNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAT----------TAATTTCATGGG---AGTAAGAG
gi|5 : tcTTTGCCTA--TTTT--GTGCTATGTGACG-TTG-A--T---ACTACTTTA-CGTTACGTCACAGA-CAGGCGACGTT--ACCCTTGT-CCTCAC-ACG-CATATGAAA---CAATGACG-CAAAC-TAA-CGCAA--TTTTT-GT-C-TATT--------TTTT--TT-TATC-----AAAAA---GATAATTA-CC-GACTTAT-TTA-TCT--A-------TTTTTTAAA--CTCTTATTTCAGATCATATTTTT-GGAATGAAAA-GTATTTCATTTCCATAAAAAA--CA---AT-TATTTATTGTT-TA-AATCAG-AACCAGAAAAAGC--ATCG-TCGAAAACTAATGA--------AAACCAATTTTTAAAAATCCGGATTGTTTTCAT-ATGAAGAGACGAAACTTATTAAAATGACATT-AGAAGACGAATAAAATAGGTATGCGG-AAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCCAAAAAGACTCGT-GTGGTTTGTTTGCGCAAC----TT------CTGACGTTCTGGATTGT-GGGAATT--ACTTTTTCTA-TAAA-------AT-----TATATTTTTTTAA-GTTT-GC----AAAAATTGTATGCGATATCGTT-TACGA-TTATTATGAAATAGCAATGTT-------TA---TTTCC------ATGG-------------AC------TATT-TCAAAATGCATGAATATTTGACGGTGAAATAAT-TATAA-AT-AT-GCGAATTATCATCG-TTATTGTTCACTTATAATTTTC-TAATC-ATGATTTA-TTATT-C-C---TAACGTT-AATT-TATGA-TATAA-TATCAACC-ATTGTTAGAAAAAAC---GCAAATATATTGTTGTATAAATAC-TCTTTAA-AAGCA-CTTCATGACTTGAAGAAACAATTC-AAATAC--AATCGAACTCAAATATTCTTGTACTTTCGTTAAT------------TTAATG--CTCT-----TCT------ATTTTTTCA---AC--ATCAGT-TTCTAAATAT--AACTG-TATTTTGCATCGTATTG--CGGTCAGAAAA-T-GTCTCTCTCTAGCA-TCCAAGAAATTCAATCGACA-----------AAAAA----------------CAATGTATTATTTTTCGATGccg
gi|6 : tcATGA-TATCAAC-TATTGTTAGAAAAAAA---GCAGATATATTGTTGTATAAATAC-TCTTTAA-TGGCA-CTT-TT------AG-AAAATATTCAAA-TACA-AA-CGAACCCAAATATCCGTGTACTTGCGTCAATGTATTGT-A-CGTTAATGCACTCTG-ATATTTT-CGGAATTTTCTTA----TCA-TCATT-TTCTAAATAC--AA-TG-TATTTTGCACCGTATTG--TGGTCAGAAAA-T-GACTCACTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTAATCTTCGATGGATGA-ATTCCATGGAA-CAATGAGAAACATTGTTTCCTGCACATGTAAATGCAAAA---C-ATCGAATATT-TA-GAAAAG-CCTATATATATCTT-ACTG-TGTAAATCTGTTCATA-----CA--TTTCATCGTA------------------TTAATTAAGTT---AA-TTTCA-GT---AT--G--------CTTACACAAA-TCTT-AAATA-GATGAAACATAA-TTTCCAAA--TGGA-T-AAT-T-GTAGTACCATTGCTGAATAACTCGTAAAATAGAAATACT-A------ATTCTAAAA---A-TTC--TTTTTCTA
gi|7 : TATAA-CTA-TG-CGAATTATCATTGAT-ATTGTTCACTTAGAATTTTCT-AATCA-TCGTTCA-TTA-TTC-C---TAACGTCAATTTGTA--A-TATCA-TATCAAC-TATTGTTAGAAAAAAA---GCAAATATATTGTTGTATAAATAC-TCTTGAA-CAGCA-CTT-GT------AG-AAAGTATTCAAA-TACA-AA-CAAACCCAAATATCCGTGTACTTGCATTAATGCATTGT-A-CGTTAATGCACTCTG-ATATTTT-CAGAATTTTCCTC----TCA-TCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCATCTAGCA-TCCAATAAATGCAATCGACAAAAAAACCCCTAAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAAGCCATGGAA-AAGTGAGAAACGTTCTTTCCCGCACAGGTAAATGCAAAA---CACT-GAATATT-TA-GACGAT-CCTATAGCTATCTT-ACTG-TGCAG---TGTTTATA-----TAT-
gi|8 : taatCG-CAAAA-TAA-CGCAA--TTTTT-GT-C-TATTCC-TGT--TTTT--CG-TATT-----GAAAA---GGTAAATA-CC-GACTTAT-TTA-TCT--AAAA-ATTTTA-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTGTTTCATTTCCATAAAAAA--CGT-AA--TTTTTGTTGGT-TA-AATCAGC-ACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTCTAAAAATCCGGA-TTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATT-AGAAGACGAATAAGACAGCCATGCGGAAAACAATTATC-CAAT-TTTAATTATCTTTTAAAATAT---TTGTTAAAAAGAGGCATAA-----CGTTCGCGCAGCTTATTT------CTGACGTTCTGGATTGTC-GGAATG---ATTTTTTT-TTAAA-------a
gi|9 : TGCAAA-AC---A---C--T-GAATATT-TAAGACAAGGCCTATGTCTTTCTTGACTGCTGTAG---TGTTCATA-----CAT-T--CATCGTA-TTGAA-TCTCT--AGATTTAATTAAGTT---GATG---ACGTTAAATTCAGTTGCTTCCTTACACAAACTCTTAA------------------TTTTCAAA--TAGA-T-AA---------------GTTGAGTAACTCGTAAAAAAG-AAAACCGATCCCTGGCTTTAAAACACAGGACC-ATT----GTATT-----------CAT-TGAAA-ATGCACATTTTCAG-GTTCCGCACTAATTCTT-GAACCAGTGCACGGGCTTCTTTCAA-TTTCATAA-GACA-TGTC-AGAGGGCATGA-TTGTGTTCCACTGCAATTGATTTCGAACTTAtaa
Alignments
lowQualScore : 11 11 1 11 2 1111 1 11 111 111111 222 111111 11 11 1 1 1 11 222222 1 1 1 1 6666666666666666666666666666666 11 11 222222222222 3333 2 1 222222222222 55555555555555555555555 1 1 11 1 1 11111 1 11 1 111 1 1 222 1 111111111 1 11111 111 11 22222222 1 11 111 22222222222 4444444444444444 111 333333333333 222 11111 11 1 666666666666 111 3333333333333333333 11 11 11 1 222 222222222 11111 22 2 222 11111 11 1 11 1 1 111 111 1 1
lowQualScore : 66 33 5 5 66 888 5 22 66 5 5 1 6666 4 4 2 22 4 111 99 66 66 4 444444 333 4 8 4 4 66 8 5 333333 66 8 4 88 88 11 0 0 6 55 5 222222 6 5 7 7 5 3 3 0000000000000000000000000000000 1 1 6 1 44 44 44 777777777777 8 7777 0 8 5555 0 0 8 0 999999999999 44444444444444444444444 0 5 0 0 0 0 99 11 1 0 3 99999 0 7 44 3 6 888 111 7 3 5 3 6 5 1 000 6 5 1 888 5 5 888888888 5 2 88888 1 111 1 44 5 2 55555555 1 5 33 5 2 555 5 5 5 33333333333 3333333333333333 3 22 666 1 8 4 777777777777 77 5 2 5 22 5 5 000 44444 66 3 555555555555 111 3 3 7777777777777777777 6 7 3 66 00 5 88 3 6 111 3 3 111111111 77777 88 3 3 00 0 2 3 99 5 0 777 44444 22 1 99 5 77 1 5 99 22 5 77 0 3 3 5 5 5 55 777 777 0 3
lowQualScore : .. .. . . .. ... . .. .. . . . .... . . . .. . ... .. .. .. . ...... ... . . . . .. . . ...... .. . . .. .. .. . . . .. . ...... . . . . . . . ............................... . . . . .. .. .. ............ . .... . . .... . . . . ............ ....................... . . . . . . .. .. . . . ..... . . .. . . ... ... . . . . . . . ... . . . ... . . ......... . . ..... . ... . .. . . ........ . . .. . . ... . . . ........... ................ . .. ... . . . ............ .. . . . .. . . ... ..... .. . ............ ... . . ................... . . . .. .. . .. . . ... . . ......... ..... .. . . .. . . . .. . . ... ..... .. . .. . .. . . .. .. . .. . . . . . . .. ... ... . .
lowQualScore : 99 88 0 0 22 888 0 88 99 0 0 2 8888 4 4 8 22 4 444 00 11 11 4 888888 777 4 9 4 4 11 9 3 444444 11 0 4 33 22 55 0 0 0 77 7 444444 7 5 3 3 0 3 3 2222222222222222222222222222222 0 0 7 0 55 77 77 999999999999 0 6666 8 0 8888 6 0 0 6 888888888888 88888888888888888888888 8 0 6 8 8 8 44 00 4 6 3 00000 8 3 77 3 7 777 777 3 5 0 5 7 7 4 000 3 0 4 999 7 7 333333333 0 0 44444 4 666 7 44 7 7 66666666 4 0 66 0 5 444 0 0 0 88888888888 1111111111111111 2 77 555 0 4 9 666666666666 44 7 3 7 00 7 7 000 33333 44 3 777777777777 777 5 2 8888888888888888888 7 3 2 00 33 7 33 3 7 777 7 0 777777777 77777 33 2 8 88 0 5 2 22 7 1 333 22222 77 4 11 7 00 4 7 99 11 7 22 2 3 3 2 8 2 88 555 555 0 3
consensus : CTTTTGCCTA--TTTT--GCGCTATGTGACG-TTG-AA-T---ACTACTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-CAAAA-TAAACGCAA--TTTTT-GT-C-TATTCC-TTT--TTTT--CT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTA-TCT--AAAA-AAATTT-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTATTTCATTTCCATAAAAAA--CGT-GAT-TTTTTATTGTT-TA-AATCAGCGACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAGACGAATAAGACAGCCATGCGGAAAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAAAGAGTCAT-A-----CGTTCGCGCAGC----TT------CTGACGTTCTGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAAAATGCATGCGATATCGTTGTACGA-TTATTATGAAATACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGATATTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAA-CTAATGGCGAATTATCATTGATGATTGTTCACTTAGAATTTTCTTAATCAATCGTTTA-TTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-TATCAACCTATTGTTAGAAAAAAA---GCAAATATATCGTTGTATAAATAC-TCTTTAA-CGGCA-CTT-GT------AGGAAAATATTCAAAATACA-AAACGAACCCGAATATCCGTGTACTTGCGTTAATGCATTGT-A-CGTTAATGCACTCTGGATATTTT-CGGAATTTTCTTA---ATCAATCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAGNCCATGGAA-CAATGAGAAACATTNTTTCCCGCACATGTAAATGC---A---C-CT-GAATATT-TA-GACAAG-CCTATATCTATCTT-ACTG-TGTAG---TGTTCATA-----CAT-TTTCATCGTA-TTGAA-TCTCT--A-ATTTAATTAAGTT---AATTTTCACGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAA--TGGA-T-AAT-T-GAAGTACCATTGCTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCACATTTTCAG-GTTC-GCACGAATCTTT-GGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGA-TT-TTTCTCGCTGC-ACTGATTTGGAACTTAATAATGAAACGC-GCTA-ATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
Reference ( family-1935 ) : CTTTTGCCTA--TTTT--GCGCTATGTGACG-TTG-AA-T---ACTACTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-CAAAA-TAAACGCAA--TTTTT-GT-C-TATTCC-TTT--TTTT--CT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTA-TCT--AAAA-AAATTT-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTATTTCATTTCCATAAAAAA--CGT-GAT-TTTTTATTGTT-TA-AATCAGCGACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAGACGAATAAGACAGCCATGCGGAAAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAAAGAGTCAT-A-----CGTTCGCGCAGC----TT------CTGACGTTCTGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAAAATGCATGCGATATCGTTGTACGA-TTATTATGAAATACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGATATTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAA-CTAATGGCGAATTATCATTGATGATTGTTCACTTAGAATTTTCTTAATCAATCGTTTA-TTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-TATCAACCTATTGTTAGAAAAAAA---GCAAATATATCGTTGTATAAATAC-TCTTTAA-CGGCA-CTT-GT------AGGAAAATATTCAAAATACA-AAACGAACCCGAATATCCGTGTACTTGCGTTAATGCATTGT-A-CGTTAATGCACTCTGGATATTTT-CGGAATTTTCTTA---ATCAATCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAGNCCATGGAA-CAATGAGAAACATTNTTTCCCGCACATGTAAATGC---A---C-CT-GAATATT-TA-GACAAG-CCTATATCTATCTT-ACTG-TGTAG---TGTTCATA-----CAT-TTTCATCGTA-TTGAA-TCTCT--A-ATTTAATTAAGTT---AATTTTCACGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAA--TGGA-T-AAT-T-GAAGTACCATTGCTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCACATTTTCAG-GTTC-GCACGAATCTTT-GGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGA-TT-TTTCTCGCTGC-ACTGATTTGGAACTTAATAATGAAACGC-GCTA-ATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
gi|1 : CTTTTGCCTA--TTTTCCGCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-AATAA-TAAACGCAAATTTTTT-GTGT-TATTCCGTTT--TTTT--CT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTG-TCT--AAGATAGATTT-----A--CTCATATTTTAGATAATATTTTCGTGTATGAAAA-GTATTTCATTTCCATAAAGAAATCGT-GAT-TTTTTATTGTTATATAATCAGCGACCTGAAAAAGCCAATCG-TCGAAAACTAATGAAA---------CCAATTTTTAAACATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAG-CGAATAAG-CAGCCATACGGAAAA-AGCTATCACAATGTTTAATTAACGTTTAAAATATTGATTGCTAAAAAGAGTCAT-A------GTT-GTG-------------------------TGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAACATGCATGCGATATCGTTGTACGA-TTATTATGAA-TACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGAT-TTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAAGCTAATGGCGAATTATCATTGATGATTATGCACTTAAAATTTTCTTAATCAATCGTTTAGTTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-CATCAACCTATTGCTAGAAAGAAATATATAAATATATAAT-ATATAAATACGTCTTTAA-CAGCA-CTT-GT------AGGAAAATATCCAAAATACAGAGACGAACCCGATTATCCGTGTACTTGTGTTAATGCATTGTAA-CATTAATTTACTCTGGATATTTT-CAGAATTTTCTTA---ATCAATCAGTGTTCT-AATAC--AACTG-TATTTTG-ACCGTATTG---GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAAG---------------CAATGTA-TATTCTTCGATGGTTAAGAGCCCATGGA---AATGAGAAACATTTGGTCCCGCACA--------C---A---C-CT-GAATATT-TA-GACAGG-CCTATAGCTATCTT-GCTG-TGTAG---TGTTCATA-----CATGTTTCATCGTAGTTGAAGTCTCTAAA-ATTCAATTAAGTT---AATTTTCATGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAAAGTGGAGT-AATGTGGAAGTACCCTTACTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCATATTTTCAG-CCTC-GCACGAATCTTTGGGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGATTT-TTTCTCGATGC-ACTGATTTGGAACTTAATAATGAAACGCGGCTAGATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
gi|10 : TTTGCCTA--TTTT--GCGCTATGTCGCGATTG-AG-TTGAACTA-TTTA-CGTTACGTCACAG--CAGGCGACGTTTTACCCCTGTGTCCCGC-ACG-C-TCTGA-GAAGCAACGACG-CAAAA----ACGCA---TTTTG-GT-AATCTTCC-TTTATTTTT--CT-TATT-----AAAAA---GGTAATTA-CC-GACTTATATAA-TCA--AAAA-AAATTT-----A--ATCATATTTTAGATAATATTTT--TGTA-GAAAA-GTATTTCATTTCCAT-AATAA--CGT-AA--TTTTTATTGTT-TA-AATCA
gi|11 : ctcCTCTTGCCTAGGTTTT--GCGCTATGTGACG-TAT-AA-T---ACTACTTTA-CGTTACGTCACAGATC-GACGACGT---ACCCT-AT-CCTCGCGACG-CATCTGAAG--GCACTGACAACAAAA-TAA-CGCAA--TTTTT-GT-C--ATTTC-TTT--TTTTTTCT-TATT--------AAAAGCGTAATTA-CCCGACTTAT-TTAGTCT--AAAA-AAAATA-----A--CTCATATTTTAGATAATATTTTC-TGTGTGAAAA-GTATTTCATTTCCATAAAAAA--Ca
gi|12 : ctTTTGCCTA--TTTT--GCGCTATGTGACG-TTATAACT---A-TACTTTATCGTTACGTCA-AG-ACAGGCGACGTT--ACTCTTGT-CCTCGC-AC-GCATCT---GAAGCACTGACG-C-AAA-T-AACGCAA--TTTTT-GT-C-TTTCCT-TTT--TTTT--CTGTATTTGAAAAAAAAAAGGCTAATTA-CCGGAGTTAT-TTA-TCT----AA-AAATTA-----A--CTCATATTTTAGATAATATTTTC-TGT
gi|13 : cAAGATGCACA-TTTCAGCGTTC-GCACAAATGTT
gi|13 : ACAAATGTTCAAA-GGACA-TGTCA-GATAGCATGA-TT-TT-CTCACTGC-ACTGATTAAGAACTTA-TAATCAAACAC-GCTA-ATGCTTGACAAAAcaaaggacatgtcagatagcatgattttctcactgcactgattaagaacttataatcaaacacgctaatgcttgacaaaaagcat
gi|14 : aagatgcacatttcagcgttcgc-TATTTTGCACCGTATTG--CGGTCAGAAAA-TCGACTCCCTCTAGTA-TCCAATAAATGCAATCAACA-----------AAAAAAAACAACAAAAAACCCCGATGTATTATTCCTCGATGGTTGAGAAGCagcat
gi|15 : TATTTTACATAATATTTTC-TGTATGAAAA-GAGATTCATTTCCATAAAAAA--CG--GAA-TTTTTATTGTT-TA-AATCAGC-ACATGAAAAAGC--ATCG-TCGAAAACTAATGAAAA
gi|16 : TC-GCACGAATCTT---GAACAGTGCACGGGCTT------------------ACAATGTCA-GAAAGCATGA-TT-TT-CTCACTGC-ACTGATATGGAACTTG-CAATGAAACGC-GCTA-ATGCTTGACAAAA
gi|2 : CTTTTGCCTA--TTTTCCGCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-AATAA-TAAACGCAAATTTTTT-GTGT-TATTCCGTTT--TTTT--CT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTG-TCT--AAGATAGATTT-----A--CTCATATTTTAGATAATATTTTCGTGTATGAAAA-GTATTTCATTTCCATAAAGAAATCGT-GAT-TTTTTATTGTTATATAATCAGCGACCTGAAAAAGCCAATCG-TCGAAAACTAATGAAA---------CCAATTTTTAAACATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAG-CGAATAAG-CAGCCATACGGAAAA-AGCTATCACAATGTTTAATTAACGTTTAAAATATTGATTGCTAAAAAGAGTCAT-A------GTT-GTG-------------------------TGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAACATGCATGCGATATCGTTGTACGA-TTATTATGAA-TACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGAT-TTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAAGCTAATGGCGAATTATCATTGATGATTATGCACTTAAAATTTTCTTAATCAATCGTTTAGTTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-CATCAACCTATTGCTAGAAAGAAATATATAAATATATAAT-ATATAAATACGTCTTTAA-CAGCA-CTT-GT------AGGAAAATATCCAAAATACAGAGACGAACCCGATTATCCGTGTACTTGTGTTAATGCATTGTAA-CATTAATTTACTCTGGATATTTT-CAGAATTTTCTTA---ATCAATCAGTGTTCT-AATAC--AACTG-TATTTTG-ACCGTATTG---GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAAG---------------CAATGTA-TATTCTTCGATGGTTAAGAGCCCATGGA---AATGAGAAACATTTGGTCCCGCACA--------C---A---C-CT-GAATATT-TA-GACAGG-CCTATAGCTATCTT-GCTG-TGTAG---TGTTCATA-----CATGTTTCATCGTAGTTGAAGTCTCTAAA-ATTCAATTAAGTT---AATTTTCATGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAAAGTGGAGT-AATGTGGAAGTACCCTTACTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCATATTTTCAG-CCTC-GCACGAATCTTTGGGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGATTT-TTTCTCGATGC-ACTGATTTGGAACTTAATAATGAAACGCGGCTAGATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAGa
gi|3 : TCTGCCTA--TTTT--GCGCTATGTGACG-TTG-A--T---ACTATTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACG-CATCTGAAG---CACTGACG-CAAAAATATACGCAA--TTTTTTGT-C-TATTC--TGT--TTTT--CG-TATT-----GAAAA---GGTAAATATCC-GACTTAT-TTA-TCT--AAAA-A--TTT-----AACTTCATATTTTAGAATATATTTTC-TGTATGAAAAAGTGTTTCATTTCCATAAAAAA--CGTAGATATTTTTGTTGGT-TA-AAT-AGCACCTTGAAAAAGC--ATCGGTCGAAAACTAATGAAAACATGAAAACCAATTTCTAAAAATCCGGATTTTTT-CACCACGAAGAGACGAAAGTTATTAAAATGAC-TTA-GAAGACGAATAAGACAGCCATGCGGAAAACAATTATC-CAAT-TTTAATTATCTTTTAAA----TGTTTGTTAAAAGAGGGCAT-AAGT--CGTTCGCGCAGC----TTATTTCTCTGACGTTTTGGATTGTCGG-AATGA---TTTTTTT-TTAAATAAAAAAATAATGATAT-TTTTT---ATGTTTTGC----AAAAAATGCATGCGATATCGTT-TACGAATTATTATGAAATACTAATATTATTTCCATAGACTTTTCTCAAAAAT---------------ACATGA-ATATTATCAA-CAGA-TG--TATTTGACGGTAAATAATTAT-TAA-CTA-TG-CAAATTATCATTAATGATTGTTC-CTTAGAATTTTCT-AATCA-TCATTTA-TTA-T-TTC---TAACGTCAA-TT-TAAAACTATGAATATCAAC-TATTGTTAGAAAAAAA---GCAGATATATTGTTGTATAAATAC-TCTTTAAATGGCAACTT-TT------AG-AAAATATTCAAA-TACA-AA-CGAACCCAAATATCCGTGTACTTGCGTCAATGTATTGT-ATCGTTAATGCACTCTGAATATTTTTCGGAATTTTCTTACTTATCA-TCATT-TTCTAAAT-CTAAACTGGTATTTTGCACCGTATTG--TGGTCAGAAAAAT-GACTCACTCTAGCAATCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTAT-CTTCGATGAT-GAAATTCCATGGAAGCAATGAGAAACATGTTTCCTCGCACATGTAAATGC---AAAAC-ATCGAATATT--A-GAAAAG-CCTATATATATCTT-ACTG-TGTAAATCTGTTCATATCATACAT-TTCAATCGTA-TTAAA-T---------------TAAGTT---AATTT-CA-GT-A--T--G--------CTTACACAAA-TCTTAAA-TAG-ATGAAACATAATTTC-CAAA--TGGA-TTAGT-T-GTAGTACCATTGCTGAATAACTCGTAAAATAGAAATACTAA-------TTCTAAAA---A-TTCT-TTTT-CTATATTTT--ATTATAACAT-TGAA-GAT------------------GCACA----TTT-----CAGCGTTCG------CACAAATGTTCAAA-GGACA-TGTCA-GATAGCATGA-TT-T--CTCACTGC-ACTGATTAAGAACTTA-TAATCAAACAC-GCTA-ATGCTTGACAAAAAAAGCATGT-CGA-TGTGAAA--CATTGTA-GTTGTACTACTAATTTTATGGGGGTGG-TGGGGGGGAAACTTCACAAAA
gi|4 : ttggcTTTGCCTA--TTTT--GCGCTATGTGACA-TTG-A--T---ACTACTTTA-CCTTACGTTACAGA-CAGGCGACGTT--ACCCTTGT-CCTCGC-ACG-CATCTGA-----------CG-CAAAA-TAG-CTCAA--TTTTT-GT-T-TATTCC-TTT--TT----CT-TA----------------ATAATTA-CC-GACTTAT-TTA-TCTTTAAAA-AAAC-------A--CTCATATTTTAGATAATATTTTT-TGTATGAAAA-GTATTTAATTTCCATAAAAAAAACGT-AAT-TTT--ATTGTT-TA-AATCAGC-ACATGAAAAAGA--ATCG-TCGAAAAGTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGTTTTTTTTCAC-ACAAAGAGAGGAACGTTATTAAAATGACATT-AGAAGACGAATAAGACAGTCATGCGGAAAA-AGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAGAGAGTCAT-GTTT--TGTTAGCGCA-C----TT------CTGACATTCTTGA-TGTC-GAAATGAAAATTT--GTA-TAAA-------AT---GACAT-TTTT----ATGTTT-GC-----AAAAATGCATGCGATATCATT-TACTA-TTATTATGAAATATTAATGTT-------TA---TTTCC------ATGAACTATTTCAAAATACATGA-ATATTATC-AACAG-GTG--TTTTTGACGGTAAAATAAT-TATAA-CT-AT-GCGAATTATCATTCAT-ATTGTTCACTTAGAATTTTTTTTATC-ATCGTTTA-TTA-T-T-CTTATAACGTC-AATT-CATAA-TATGA-TCTCAA-CTATTGTGAG-AAAAAA---TCAAATACATCGTTGTATAAATAC-TCTTTAA-GAGCA-CTT-GT------A-GATACTATTC-AAATAC--AAACAATCTCAAAT---TGTGTACTTGCGTTAATGCATTGT-A-CGTTAATGCACTCT-GATAGTTT-CATCATTTTCTTA-----CCATCAGT-TTCTAAATACA-AACTG-AA--TTGCACCGTATTGGTTGGTCAGAAAC-T-GACTCCCTCTAGCA-TCCAATAAACGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTTAATGGTTGAGGGGCCATGGAA-CAATAAGAAAAA-TATTTCCCGCACATGTAAATGC---A--------AAACACTAAA-GACA-----TGTATATATCTT-AC---TGTAG---TGTTCATG-----CA--TTTCATCGTA-TTGAA------------TTAATTAAGTTTTAAAATTTCTC-T---AT--A--------TTTACACAAA-TCTT-AAATA-AATGAAATATA---------------A-T-AAT-T-GAAGTATCATTGCCGAATAACTCGTAAAAAAGAAATACT-A------ATTCTAAAA---A---CTATTTTTCTATATTCT--ATTGTAGCAT-TGAAATATGCACATTTCAGG-GTTC-GCACGGATCTT---GAACAGTGCACGGGCTT-GA-CACTTCTC-AAAGGACA-TGTC-AGAGGGC-CGG-AC-TTTCTCAATGC-ACTGATTTGGAACTTAA-ANNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAT----------TAATTTCATGGG---AGTAAGAG
gi|5 : tcTTTGCCTA--TTTT--GTGCTATGTGACG-TTG-A--T---ACTACTTTA-CGTTACGTCACAGA-CAGGCGACGTT--ACCCTTGT-CCTCAC-ACG-CATATGAAA---CAATGACG-CAAAC-TAA-CGCAA--TTTTT-GT-C-TATT--------TTTT--TT-TATC-----AAAAA---GATAATTA-CC-GACTTAT-TTA-TCT--A-------TTTTTTAAA--CTCTTATTTCAGATCATATTTTT-GGAATGAAAA-GTATTTCATTTCCATAAAAAA--CA---AT-TATTTATTGTT-TA-AATCAG-AACCAGAAAAAGC--ATCG-TCGAAAACTAATGA--------AAACCAATTTTTAAAAATCCGGATTGTTTTCAT-ATGAAGAGACGAAACTTATTAAAATGACATT-AGAAGACGAATAAAATAGGTATGCGG-AAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCCAAAAAGACTCGT-GTGGTTTGTTTGCGCAAC----TT------CTGACGTTCTGGATTGT-GGGAATT--ACTTTTTCTA-TAAA-------AT-----TATATTTTTTTAA-GTTT-GC----AAAAATTGTATGCGATATCGTT-TACGA-TTATTATGAAATAGCAATGTT-------TA---TTTCC------ATGG-------------AC------TATT-TCAAAATGCATGAATATTTGACGGTGAAATAAT-TATAA-AT-AT-GCGAATTATCATCG-TTATTGTTCACTTATAATTTTC-TAATC-ATGATTTA-TTATT-C-C---TAACGTT-AATT-TATGA-TATAA-TATCAACC-ATTGTTAGAAAAAAC---GCAAATATATTGTTGTATAAATAC-TCTTTAA-AAGCA-CTTCATGACTTGAAGAAACAATTC-AAATAC--AATCGAACTCAAATATTCTTGTACTTTCGTTAAT------------TTAATG--CTCT-----TCT------ATTTTTTCA---AC--ATCAGT-TTCTAAATAT--AACTG-TATTTTGCATCGTATTG--CGGTCAGAAAA-T-GTCTCTCTCTAGCA-TCCAAGAAATTCAATCGACA-----------AAAAA----------------CAATGTATTATTTTTCGATGccg
gi|6 : tcATGA-TATCAAC-TATTGTTAGAAAAAAA---GCAGATATATTGTTGTATAAATAC-TCTTTAA-TGGCA-CTT-TT------AG-AAAATATTCAAA-TACA-AA-CGAACCCAAATATCCGTGTACTTGCGTCAATGTATTGT-A-CGTTAATGCACTCTG-ATATTTT-CGGAATTTTCTTA----TCA-TCATT-TTCTAAATAC--AA-TG-TATTTTGCACCGTATTG--TGGTCAGAAAA-T-GACTCACTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTAATCTTCGATGGATGA-ATTCCATGGAA-CAATGAGAAACATTGTTTCCTGCACATGTAAATGCAAAA---C-ATCGAATATT-TA-GAAAAG-CCTATATATATCTT-ACTG-TGTAAATCTGTTCATA-----CA--TTTCATCGTA------------------TTAATTAAGTT---AA-TTTCA-GT---AT--G--------CTTACACAAA-TCTT-AAATA-GATGAAACATAA-TTTCCAAA--TGGA-T-AAT-T-GTAGTACCATTGCTGAATAACTCGTAAAATAGAAATACT-A------ATTCTAAAA---A-TTC--TTTTTCTA
gi|7 : TATAA-CTA-TG-CGAATTATCATTGAT-ATTGTTCACTTAGAATTTTCT-AATCA-TCGTTCA-TTA-TTC-C---TAACGTCAATTTGTA--A-TATCA-TATCAAC-TATTGTTAGAAAAAAA---GCAAATATATTGTTGTATAAATAC-TCTTGAA-CAGCA-CTT-GT------AG-AAAGTATTCAAA-TACA-AA-CAAACCCAAATATCCGTGTACTTGCATTAATGCATTGT-A-CGTTAATGCACTCTG-ATATTTT-CAGAATTTTCCTC----TCA-TCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCATCTAGCA-TCCAATAAATGCAATCGACAAAAAAACCCCTAAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAAGCCATGGAA-AAGTGAGAAACGTTCTTTCCCGCACAGGTAAATGCAAAA---CACT-GAATATT-TA-GACGAT-CCTATAGCTATCTT-ACTG-TGCAG---TGTTTATA-----TAT-
gi|8 : taatCG-CAAAA-TAA-CGCAA--TTTTT-GT-C-TATTCC-TGT--TTTT--CG-TATT-----GAAAA---GGTAAATA-CC-GACTTAT-TTA-TCT--AAAA-ATTTTA-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTGTTTCATTTCCATAAAAAA--CGT-AA--TTTTTGTTGGT-TA-AATCAGC-ACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTCTAAAAATCCGGA-TTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATT-AGAAGACGAATAAGACAGCCATGCGGAAAACAATTATC-CAAT-TTTAATTATCTTTTAAAATAT---TTGTTAAAAAGAGGCATAA-----CGTTCGCGCAGCTTATTT------CTGACGTTCTGGATTGTC-GGAATG---ATTTTTTT-TTAAA-------a
gi|9 : TGCAAA-AC---A---C--T-GAATATT-TAAGACAAGGCCTATGTCTTTCTTGACTGCTGTAG---TGTTCATA-----CAT-T--CATCGTA-TTGAA-TCTCT--AGATTTAATTAAGTT---GATG---ACGTTAAATTCAGTTGCTTCCTTACACAAACTCTTAA------------------TTTTCAAA--TAGA-T-AA---------------GTTGAGTAACTCGTAAAAAAG-AAAACCGATCCCTGGCTTTAAAACACAGGACC-ATT----GTATT-----------CAT-TGAAA-ATGCACATTTTCAG-GTTCCGCACTAATTCTT-GAACCAGTGCACGGGCTTCTTTCAA-TTTCATAA-GACA-TGTC-AGAGGGCATGA-TTGTGTTCCACTGCAATTGATTTCGAACTTAtaa
blockSeqs : GG CC A T AC TGA T AT TT G G G AGAA A A A AT T AA CG AT TT G TGAAAA AAG T C A G TT T A TTTTAA AC G A AT TA TA A T G CA G ACATGA C A A A C A G AAGTCGTTCGCGCAGCTTATTTCT G T G G AA CG AT TAAAAAAATAAT A TTTA T CAAG G A A ATTTCCATAGAC ATGAACTATTTCAAAAT G A AA AA T A G AATGG G T AA G T TT TTA A A G T C A C TAT A T G ATG A C GACTTGAAG A A AGAGA G AA T GG T A CTTATCA G A TA G C GTT A C A AAAAAACCCCT AAACAACAAAAAACCC T AG AGC T T T AAAACATC AA A G G GC G C ATC TCATA TG G GTCTCTAAAAT TTA T T CGTTAAATTCAGTTGCTTC C A A GG AT T AG G T GTG A C GATCCCTGG CACAG TA T T TA C G T CG C TGG CTTTC TG A AG A AA T G TT AC A AT G G C T C TG TAC GGT T A
blockSeqs : . . . . G . A AA . . . G GAA . . A . . GT C . . . A AAG . G . . . . A T . . . AA T A . . A . . ACATGA . A A A C . . GTGGTTTGTTTGCGCAACTT A C G A AA TT T ATG . TTTA . . . . A TAAGG TCAAAAAT . A CA . T A . ATG G T A . . TC . A A G A . . C . T T . CA . . AGG A A AAA A AT C GA . G ATCAA . A A . C C . . . . G T GC AC T T T AAAACATC T . A . TA . . ATC . T . TCTCTAGAT . T T TGTAAATA . A A G AT C . . . T T A AAA AG T T T . . G T C . TG TACC TT A AG . A . . TT AC . T . . N N N G . . . .
blockSeqs : . . . . A . . AA . . . . GAA . . A . . C C . . . G AAG . . . . . . A A . . . . T T . . A . . ACATGA . . A A C . . AACGTTCGCGCAGCTTATTT G C G G A TC A AT . T . . . . A TA AATGG . A A . A . . ATG T T A . . C . A A . T . . C . C T . GA . . AG A A AAA A A C G . A CCA . A . . C T . . . . . T TT AC A T T AAAACACT T . A . TA . . . . T . T . A T GTATG . A A A A T . . . T A A AA A T T C . . G T G . T CACA TG A G . A . . GT GA . C . . . . . T . . .
blockSeqs : . . . . A . . A . . . . AG . . A . . C T . . . G . . . . . . . G A . . . . T T . . . . . . . . A A . . . GTTTTGTTAGCGCACTT G C . G . TT A AT . . . . . . . TA ATGG . . G . A . . ATG . . A . . T . . T . T . . . . T T . AA . . AG A . AAT A A C G . G ACA . A . . C C . . . . . T GG AA G G T ACCT T . A . TA . . . . T . . . T . CTATA . . . G . . . . . T T A AA A C . . . . T . G . . GAC TT A G . A . . T AC . T . .
blockSeqs : . . . . . . . A . . . . AG . . . . . C C . . . A . . . . . . . A T . . . . T T . . . . . . . . . . . . . AGTTGTG . . . . . G T . ATG . . A . . C . . . . . . . . . T T . TG . . AG . . AAA A A C G . A TCA . A . . C T . . . . . T TT . C T . ACT T . A . GC . . . . . . . . . . GTATG . . . . . . . . . . . . AA A . . . . . . . . T . A . A . . T AA . A . .
blockSeqs : . . . . . . . A . . . . AA . . . . . T C . . . G . . . . . . . T T . . . . . . . . . . . . . . T . . CA . . AG . . AAA A . . . . . TCA . . . . C C . . . . . T AG . . A . . . . TC . . . . . . . . . . A . . . AC .
blockSeqs : . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . C . . . . . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : ** A* AA** ** C** C* *** ** ** ACATGA GTGTTGTTCGCGCAGCTT************* A* N* AT********** **** TAGG******** A* ATG** A* *** AG******* AAA** A** G* TCA***** C** **************** AC* AAAACACC**** T* CCCCGAT***** GTATG************** G* A* ** T** AA******* A**** ** T** AG A* T*
originalCons : CTTTTGCCTA--TTTT--GCGCTATGTGACG-TTG-AA-T---ACTACTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAGAAGCACTGACG-CAAAA-TAAACGCAA--TTTTT-GT-C-TATTCC-TTT--TTTT--CT-TATT-----GAAAAAAGGGTAATTA-CC-GACTTAT-TTA-TCT--AAAA-AAATTT-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTATTTCATTTCCATAAAAAA--CGT-GAT-TTTTTATTGTT-TA-AATCAGCGACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAGACGAATAAGACAGCCATGCGGAAAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAAAGAGTCAT-A-----CGTTCGCGCAGC----TT------CTGACGTTCTGGATTGTCGGGAATGAAAATTTTCGTATTAAA-------ATG--GATAT-TTTTTTTAATGTTT-GCCAAGAAAAAATGCATGCGATATCGTTGTACGA-TTATTATGAAATACCAATGTT-------TAAGGTTTCC-----AATGG-------------ACATGAGATATTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAA-CTAATGGCGAATTATCATTGATGATTGTTCACTTAGAATTTTCTTAATCAATCGTTTA-TTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-TATCAACCTATTGTTAGAAAAAAA---GCAAATATATCGTTGTATAAATAC-TCTTTAA-CGGCA-CTT-GT------AGGAAAATATTCAAAATACA-AAACGAACCCGAATATCCGTGTACTTGCGTTAATGCATTGT-A-CGTTAATGCACTCTGGATATTTT-CGGAATTTTCTTA---ATCAATCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAGNCCATGGAA-CAATGAGAAACATTNTTTCCCGCACATGTAAATGC---A---C-CT-GAATATT-TA-GACAAG-CCTATATCTATCTT-ACTG-TGTAG---TGTTCATA-----CAT-TTTCATCGTA-TTGAA-TCTCT--A-ATTTAATTAAGTT---AATTTTCACGT-AAAT--A--------CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAA--TGGA-T-AAT-T-GAAGTACCATTGCTGAATAACTCGTAAAAAAGAAATACTAA------ATTCTAAAA---AGTTCT-TTTTTCTATATTTTTAATTATAACATCTGAAAGATGCACATTTTCAG-GTTC-GCACGAATCTTT-GGAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGA-TT-TTTCTCGCTGC-ACTGATTTGGAACTTAATAATGAAACGC-GCTA-ATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
finalCons : CTTTTGCCTA--TTTT--GCGCTATGTGACG-TTG-AA-T---ACTACTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGAAA--GCACTGACG-CAAAA-TAAACGCAA--TTTTT-GTC--TATTCC-TTT--TTTT--CT-TATT-----GAAAA---GGTAATTA-CC-GACTTAT-TTA-TCT--AAAA-AAATTT-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTATTTCATTTCCATAAAAAA--CGT-GAT-TTTTTATTGTT-TA-AATCAGCGACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAGACGAATAAGACAGCCATGCGGAAAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAAAGAGTCATGTGTTGTTCGCGCAGCTT-------------CTGACGTTCTGGATTGTCGGGAATGA-AATTTTCGTN-TAAAAT----------GATAT-TTTTTTTAATGTTT-GC----AAAAAATGCATGCGATATCGTTGTACGA-TTATTATGAAATACCAATGTTTAGG--------TTTCC-----AATGG-------------ACATGAGATATTATCAAACAGA-TG--TATTTGACGGTAAAATATTATATAA-CTATG--CGAATTATCATTGATGATTGTTCACTTAGAATTTTCTTAATCA-TCGTTTA-TTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-TATCAACCTATTGTTAGAAAAAAA---GCAAATATATCGTTGTATAAATAC-TCTTTAA-CGGCA-CTT-GTAG-------AAAATATTCAAAATACAAA--CGAACCCGAATATCCGTGTACTTGCGTTAATGCATTGTA--CGTTAATGCACTCTG-ATATTTT-CGGAATTTTCTTATCA-----TCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTGC--GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAGNCCATGGAAC-AATGAGAAACATTNTTTCCCGCACATGTAAATGCAAAACACC----GAATATT-TA-GACAAG-CCTATATCTATCTT-ACTG-TGTAG---TGTTCATA-----CAT-TTTCATCGTA-TTGAACCCCGAT-----TTAATTAAGTT---AATTTTCAGTATG--------------CTTACACAAA-TCTTAAAATAG-ATGAAATATAA-TTTTCAAA--TGGA-T-AATT--GAAGTACCATTGCTGAATAACTCGTAAAAAAGAAATACTAA-------TTCTAAAAA----TTCT-TTTTTCTATATTTT--ATTATAACATCTGAAAGATGCACATTTTCAG-GTTC-GCACGAATCTTT--GAACAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCA-GAGGGCACGA-TT-TTTCTCGCTGC-ACTGATTTGGAACTTAT-AATGAAACGC-GCTA-ATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
Alignments
lowQualScore : 11 11 1 11 11 11111 11111 11 111 111 1111111 111 111111 11 11 1 1 1 11 222222 1 1 1 1 11111 444444444444444444444 111 11 1 2222222222 1 33333 2 1 55555555555555555555555555555555555555555 1 1 2 11 1 1 1 1 1 1 1 111 1 1 222 1 22222222 1 1 11 111 1 111111 1 1 11 111 22222222222 4444444444444444 111 11 1 222 11111 22 1 99999999999 111 2222222222 1 222222222 1 1 1 11 1 222 1 111111 111111 1111 22 2 11111 111 22222 1 1 1 1 1 111 111 1 1
lowQualScore : 66 33 5 5 66 888 5 22 66 5 5 77 77777 4 11111 22 4 111 555 66 4 4444444 555 4 8 4 4 4 66 8 5 333333 66 8 4 88 88 11 0 0 6 55 5 222222 6 5 7 7 5 3 3 99999 333333333333333333333 88 6 1 999 00 1 3 9999999999 6 0 7777 0 8 44444 0 0 8 0 66666666666666666666666666666666666666666 0 5 0 0 0 0 4 11 1 0 3 3 3 0 7 3 3 6 888 111 7 3 5 3 6 5 1 000 6 5 1 888 00000000 5 1 5 2 55 1 111 1 1 5 5 2 888888 1 1 5 33 5 2 555 5 5 5 33333333333 3333333333333333 3 22 666 1 00 1 77 88 22 5 5 000 44444 33 3 44444444444 111 2222222222 3 000000000 6 1 3 3 3 88 3 6 111 3 3 3 999999 888888 3 4444 22 3 0 2 1 33333 0 0 888 5 22222 22 1 99 5 1 1 5 99 22 5 1 0 3 3 5 5 5 55 777 777 0 3
lowQualScore : .. .. . . .. ... . .. .. . . .. ..... . ..... .. . ... ... .. . ....... ... . . . . . .. . . ...... .. . . .. .. .. . . . .. . ...... . . . . . . . ..... ..................... .. . . ... .. . . .......... . . .... . . ..... . . . . ......................................... . . . . . . . .. . . . . . . . . . . ... ... . . . . . . . ... . . . ... ........ . . . . .. . ... . . . . . ...... . . . .. . . ... . . . ........... ................ . .. ... . .. . .. .. .. . . ... ..... .. . ........... ... .......... . ......... . . . . . .. . . ... . . . ...... ...... . .... .. . . . . ..... . . ... . ..... .. . .. . . . . .. .. . . . . . . . . .. ... ... . .
lowQualScore : 99 88 0 0 22 888 0 88 99 0 0 55 99999 4 00000 22 4 444 111 11 4 4444444 666 4 9 4 4 4 11 9 3 444444 11 0 4 33 22 55 0 0 0 77 7 444444 7 5 3 3 0 3 3 88888 888888888888888888888 33 7 0 888 33 0 3 2222222222 0 8 6666 8 0 88888 6 0 0 6 22222222222222222222222222222222222222222 8 0 6 8 8 8 0 00 4 6 3 3 3 8 3 3 3 7 777 777 3 5 0 5 7 7 4 000 3 0 4 999 77777777 7 4 0 0 77 4 666 7 4 7 7 7 000000 4 4 0 66 0 5 444 0 0 0 88888888888 1111111111111111 2 77 555 0 33 4 11 00 00 7 7 000 33333 44 3 00000000000 777 8888888888 3 777777777 7 3 2 3 3 33 3 7 777 7 0 3 222222 333333 2 2222 00 8 0 5 7 55555 1 1 000 7 77777 77 4 11 7 4 4 7 99 11 7 4 2 3 3 2 8 2 88 555 555 0 3
consensus : CTTTTGCCTA--TTTT--GCGCTATGTGACG-TTG-AA-T---ACTACTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGA-A--AGCACTGAC-GCAAAA-TAAACGCAA--TTTTT-GT-C-TATTCC--TTT--TTTTCT-TATT-------GAAAA---GG-TAATTA-CC-GACTTAT-TTA-TCT--AAAA-AAATTT-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTATTTCATTTCCATAAAAAA--CGT-GAT-TTTTTATTGTT-TA-AATCAGCGACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAGACGAATAAGACAGCCATGCGGAAAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAAAGAGTCATATG--TCGTTCGCGCAGC----TT------CTGACGTTCTGGATTGTCGGGAATGAAA-TTTTCGTAT-AAA----------ATGGATATTTTTTTTAATGTTT-GCCAAGAAAAAATGCATGCGATATCGTTGTACGA-TTATTATGAAATACCAATGTT-------TAAGG--TTTCC----AATGG-------------ACATGAGATATTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAA-CT-AT-GCGAATTATCATTGATGATTGTTCACTTAGAATTTTCTTAATC-ATCGTTTA-TTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-TATCAACCTATTGTTAGAAAAAAA---GCAAATATATCGTTGTATAAATAC-TCTTTAA-CGGC--------A-CTTGTA-GAAAATATTCAAAATAC--AAACGAACCCGAATATCCGTGTACTTGCGTTAATGCATTGT-A-CGTTAATGCACTCT-GA-TATTTT-CGGAATTTTCTT-A----TC-ATCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAGNCCATGGAA-CAATGAGAAACATTNTTTCCCGCACATGTAAATGCAAAACACC-GAATATTT-AGACAA-GCCTATATCTATCTT-ACTG-TGTAG---TGTTCATA-----CAT-TTTCATCGTA-TTGAA-TCTCTA-AATTTAATTAAGTT---AAT----T----TTCA-GT--ATG----CTTACACAAA-TCTTAAAATA-GATGAAATATAA-TTTTCAAA--TGGA-T-AAT-T-GAAGTACCATTGCTGAATAACTCGTAAAAAAGAAATACT-AATTC------TAAAAA-TTCT-TTTTTCTA----TATTTTTAATTATAACATCTGAAAGATGCACATTTTCAG-GTT-CGCACGAATCTTC--GAA-CAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTC-AGAGGGCACGA-TT-TTTCTCGCTGC-ACTGATTTGGAACTT-ATAATGAAACGC-GCTA-ATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
Reference ( family-1935 ) : CTTTTGCCTA--TTTT--GCGCTATGTGACG-TTG-AA-T---ACTACTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGA-A--AGCACTGAC-GCAAAA-TAAACGCAA--TTTTT-GT-C-TATTCC--TTT--TTTTCT-TATT-------GAAAA---GG-TAATTA-CC-GACTTAT-TTA-TCT--AAAA-AAATTT-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTATTTCATTTCCATAAAAAA--CGT-GAT-TTTTTATTGTT-TA-AATCAGCGACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAGACGAATAAGACAGCCATGCGGAAAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAAAGAGTCATGTG--TTGTTCGCGCAGC----TT------CTGACGTTCTGGATTGTCGGGAATGAAA-TTTTCGTNT-AAA----------ATG-ATATTTTTTTTAATGTTT-GC----AAAAAATGCATGCGATATCGTTGTACGA-TTATTATGAAATACCAATGTT-------T-AGG--TTTCC----AATGG-------------ACATGAGATATTATCAAACAG-ATG--TATTTGACGGTAAAATATTATATAA-CT-AT-GCGAATTATCATTGATGATTGTTCACTTAGAATTTTCTTAATC-ATCGTTTA-TTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-TATCAACCTATTGTTAGAAAAAAA---GCAAATATATCGTTGTATAAATAC-TCTTTAA-CGGC--------A-CTTGTA-GAAAATATTCAAAATAC--AAACGAACCCGAATATCCGTGTACTTGCGTTAATGCATTGT-A-CGTTAATGCACTCT-GA-TATTTT-CGGAATTTTCTT-A----TC-ATCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAGNCCATGGAA-CAATGAGAAACATTNTTTCCCGCACATGTAAATGCAAAACACC-GAATATTT-AGACAA-GCCTATATCTATCTT-ACTG-TGTAG---TGTTCATA-----CAT-TTTCATCGTA-TTGAA-CCCC---GATTTAATTAAGTT---AAT----T----TTCA-GT--ATG----CTTACACAAA-TCTTAAAATA-GATGAAATATAA-TTTTCAAA--TGGA-T-AAT-T-GAAGTACCATTGCTGAATAACTCGTAAAAAAGAAATACT-AATTC------TAAAAA-TTCT-TTTTTCTA----TATTTT--ATTATAACATCTGAAAGATGCACATTTTCAG-GTT-CGCACGAATCTTT--GAA-CAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTC-AGAGGGCACGA-TT-TTTCTCGCTGC-ACTGATTTGGAACTT-ATAATGAAACGC-GCTA-ATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
gi|1 : CTTTTGCCTA--TTTTCCGCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGA-AGAAGCACTGAC-GAATAA-TAAACGCAAATTTTTT-GTGT-TATTCCG-TTT--TTTTCT-TATT-------GAAAAAAGGG-TAATTA-CC-GACTTAT-TTG-TCT--AAGATAGATTT-----A--CTCATATTTTAGATAATATTTTCGTGTATGAAAA-GTATTTCATTTCCATAAAGAAATCGT-GAT-TTTTTATTGTTATATAATCAGCGACCTGAAAAAGCCAATCG-TCGAAAACTAATGAAA---------CCAATTTTTAAACATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAG-CGAATAAG-CAGCCATACGGAAAA-AGCTATCACAATGTTTAATTAACGTTTAAAATATTGATTGCTAAAAAGAGTCATA-G--TTGT--------------------------GT---GGATTGTCGGGAATGAAAATTTTCGTATTAAA----------ATGGATATTTTTTTTAATGTTT-GCCAAGAAAACATGCATGCGATATCGTTGTACGA-TTATTATG-AATACCAATGTT-------TAAGG--TTTCC----AATGG-------------ACATGAGAT-TTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAAGCTAATGGCGAATTATCATTGATGATTATGCACTTAAAATTTTCTTAATCAATCGTTTAGTTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-CATCAACCTATTGCTAGAAAGAAATATATAAATATATAA-TATATAAATACGTCTTTAA-CAGC--------A-CTTGTAGGAAAATATCCAAAATACAGAGACGAACCCGATTATCCGTGTACTTGTGTTAATGCATTGTAA-CATTAATTTACTCTGGA-TATTTT-CAGAATTTTCTTAA----TCAATCAGTGTTCT-AATAC--AACTG-TATTTTG-ACCGTATTG---GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAAG---------------CAATGTA-TATTCTTCGATGGTTAAGAGCCCATGGA---AATGAGAAACATTTGGTCCCGCAC-------------ACACCTGAATATTT-AGACAG-GCCTATAGCTATCTT-GCTG-TGTAG---TGTTCATA-----CATGTTTCATCGTAGTTGAAGTCTCTAAAATTCAATTAAGTT---AAT----T----TTCATGTAAATA----CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAAAGTGGAGT-AATGTGGAAGTACCCTTACTGAATAACTCGTAAAAAAGAAATACTAAATTC------TAAAAAGTTCT-TTTTTCTA----TATTTTTAATTATAACATCTGAAAGATGCATATTTTCAG-CCT-CGCACGAATCTTTGGGAA-CAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGATTT-TTTCTCGATGC-ACTGATTTGGAACTTAATAATGAAACGCGGCTAGATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAG
gi|10 : TTTGCCTA--TTTT--GCGCTATGTCGCGATTG-AG-TTGAACTA-TTTA-CGTTACGTCACAG--CAGGCGACGTTTTACCCCTGTGTCCCGC-ACG-C-TCTGAGA--AGCAACGAC-GCAAAA----ACGCA---TTTTG-GT-AATCTTCC--TTTATTTTTCT-TATT-------AAAAA---GG-TAATTA-CC-GACTTATATAA-TCA--AAAA-AAATTT-----A--ATCATATTTTAGATAATATTTT--TGTA-GAAAA-GTATTTCATTTCCAT-AATAA--CGT-AA--TTTTTATTGTT-TA-AATCA
gi|11 : ctcCTCTTGCCTAGGTTTT--GCGCTATGTGACG-TAT-AA-T---ACTACTTTA-CGTTACGTCACAGATC-GACGACG-T--ACCC-TAT-CCTCGCGAC-GCATCTGA-A--GGCACTGACAACAAAA-T-AACGCAA--TTTTT-GT-C--ATTTCTTTTT--TTTTCT-TATT-------AAAAG---CG-TAATTACCC-GACTTAT-TTAGTCT--AAAA-AAAATA-----A--CTCATATTTTAGATAATATTTTC-TGTGTGAAAA-GTATTTCATTTCCATAAAAAA--Ca
gi|12 : ctTTTGCCTA--TTTT--GCGCTATGTGACG-TTATAACT---A-TACTTTATCGTTACGTCA-AG-ACAGGCGACGTT--ACTCTTGT-CCTCGC-AC-GCATCTG--A--AGCACTGAC-GC-AAA-T-AACGCAA--TTTTT-GT-C-TTTCCT--TTT--TTTTCTGTATTTGAAAAAAAAAA---GGCTAATTA-CCGGAGTTAT-TTA-TCT----AA-AAATTA-----A--CTCATATTTTAGATAATATTTTC-TGT
gi|13 : cAAGATGCACA-TTTCAGCGTT-CGCACAAATGTTC--AAA-
gi|13 : ACAAATGTTCAAA-GGACA-TGTC-AGATAGCATGA-TT-TT-CTCACTGC-ACTGATTAAGAACTT-ATAATCAAACAC-GCTA-ATGCTTGACAAAAggacatgtcagatagcatgattttctcactgcactgattaagaacttataatcaaacacgctaatgcttgacaaaaagcat
gi|14 : aagatgcacatttcagcgttcgc-TATTTTGCACCGTATTG--CGGTCAGAAAA-TCGACTCCCTCTAGTA-TCCAATAAATGCAATCAACA-----------AAAAAAAACAACAAAAAACCCCGATGTATTATTCCTCGATGGTTGAGAAGCagcat
gi|15 : TATTTTACATAATATTTTC-TGTATGAAAA-GAGATTCATTTCCATAAAAAA--CG--GAA-TTTTTATTGTT-TA-AATCAGC-ACATGAAAAAGC--ATCG-TCGAAAACTAATGAAAA
gi|16 : T-CGCACGAATCTT---GAA-CAGTGCACGGGCTT------------------ACAATGTC-AGAAAGCATGA-TT-TT-CTCACTGC-ACTGATATGGAACTT-GCAATGAAACGC-GCTA-ATGCTTGACAAAA
gi|2 : CTTTTGCCTA--TTTTCCGCGCTATGTGACG-TTG-AA-T---ACTACTTTAACGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACGGCATCTGA-AGAAGCACTGAC-GAATAA-TAAACGCAAATTTTTT-GTGT-TATTCCG-TTT--TTTTCT-TATT-------GAAAAAAGGG-TAATTA-CC-GACTTAT-TTG-TCT--AAGATAGATTT-----A--CTCATATTTTAGATAATATTTTCGTGTATGAAAA-GTATTTCATTTCCATAAAGAAATCGT-GAT-TTTTTATTGTTATATAATCAGCGACCTGAAAAAGCCAATCG-TCGAAAACTAATGAAA---------CCAATTTTTAAACATCCGGATTTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATTAAGAAG-CGAATAAG-CAGCCATACGGAAAA-AGCTATCACAATGTTTAATTAACGTTTAAAATATTGATTGCTAAAAAGAGTCATA-G--TTGT--------------------------GT---GGATTGTCGGGAATGAAAATTTTCGTATTAAA----------ATGGATATTTTTTTTAATGTTT-GCCAAGAAAACATGCATGCGATATCGTTGTACGA-TTATTATG-AATACCAATGTT-------TAAGG--TTTCC----AATGG-------------ACATGAGAT-TTATCAAACAGAATG--TATTTGACGGTAAAATATTATATAAGCTAATGGCGAATTATCATTGATGATTATGCACTTAAAATTTTCTTAATCAATCGTTTAGTTA-T-C-C---TAACGTCAAATTGTATAA-TATGA-CATCAACCTATTGCTAGAAAGAAATATATAAATATATAA-TATATAAATACGTCTTTAA-CAGC--------A-CTTGTAGGAAAATATCCAAAATACAGAGACGAACCCGATTATCCGTGTACTTGTGTTAATGCATTGTAA-CATTAATTTACTCTGGA-TATTTT-CAGAATTTTCTTAA----TCAATCAGTGTTCT-AATAC--AACTG-TATTTTG-ACCGTATTG---GGTCAGAAAA-T-GACTCCCTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAAG---------------CAATGTA-TATTCTTCGATGGTTAAGAGCCCATGGA---AATGAGAAACATTTGGTCCCGCAC-------------ACACCTGAATATTT-AGACAG-GCCTATAGCTATCTT-GCTG-TGTAG---TGTTCATA-----CATGTTTCATCGTAGTTGAAGTCTCTAAAATTCAATTAAGTT---AAT----T----TTCATGTAAATA----CTTACACAAA-TCTTAAAATAGGATGAAATATAATTTTTCAAAAGTGGAGT-AATGTGGAAGTACCCTTACTGAATAACTCGTAAAAAAGAAATACTAAATTC------TAAAAAGTTCT-TTTTTCTA----TATTTTTAATTATAACATCTGAAAGATGCATATTTTCAG-CCT-CGCACGAATCTTTGGGAA-CAGTGCACGGGCTT-TACCAATTTTCAAAAGGACA-TGTCAAGAGGGCACGATTT-TTTCTCGATGC-ACTGATTTGGAACTTAATAATGAAACGCGGCTAGATGCTTGACAAAAGAGTGATGTCCGATTGTGAAACGCATTGTATGTTG---TACTAATTTCATGGG---GG-AAGGGGGGCCACTTT-CAAAAGa
gi|3 : TCTGCCTA--TTTT--GCGCTATGTGACG-TTG-A--T---ACTATTTTA-CGTTACGTCACAGAACAGGCGACGTT--ACCCTTGT-CCTCGC-ACG-CATCTGA-A---GCACTGAC-GCAAAAATATACGCAA--TTTTTTGT-C-TATTC---TGT--TTTTCG-TATT-------GAAAA---GG-TAAATATCC-GACTTAT-TTA-TCT--AAAA-A--TTT-----AACTTCATATTTTAGAATATATTTTC-TGTATGAAAAAGTGTTTCATTTCCATAAAAAA--CGTAGATATTTTTGTTGGT-TA-AAT-AGCACCTTGAAAAAGC--ATCGGTCGAAAACTAATGAAAACATGAAAACCAATTTCTAAAAATCCGGATTTTTT-CACCACGAAGAGACGAAAGTTATTAAAATGAC-TTA-GAAGACGAATAAGACAGCCATGCGGAAAACAATTATC-CAAT-TTTAATTATCTTTTAAA----TGTTTGTTAAAAGAGGGCATAAG--TCGTTCGCGCAGC----TTATTTCTCTGACGTTTTGGATTGTCGG-AATGA---TTTTTTTTT-AAATAAAAAAATAATG-ATATTTTTT---ATGTTTTGC----AAAAAATGCATGCGATATCGTT-TACGAATTATTATGAAATACTAATATTATTTCCAT-AGACTTTTCTCAAAAAT---------------ACATGA-ATATTATCAA-CAG-ATG--TATTTGACGGTAAATAATTAT-TAA-CT-AT-GCAAATTATCATTAATGATTGTTC-CTTAGAATTTTCT-AATC-ATCATTTA-TTA-T-TTC---TAACGTCAA-TT-TAAAACTATGAATATCAAC-TATTGTTAGAAAAAAA---GCAGATATATTGTTGTATAAATAC-TCTTTAAATGGC--------AACTTTTA-GAAAATATTCAAA-TAC--AAACGAACCCAAATATCCGTGTACTTGCGTCAATGTATTGT-ATCGTTAATGCACTCT-GAATATTTTTCGGAATTTTCTT-ACTTATC-ATCATT-TTCTAAAT-CTAAACTGGTATTTTGCACCGTATTG--TGGTCAGAAAAAT-GACTCACTCTAGCAATCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTAT-CTTCGATGAT-GAAATTCCATGGAAGCAATGAGAAACATGTTTCCTCGCACATGTAAATGCAAAACATC-GAATATT--AGAAAA-GCCTATATATATCTT-ACTG-TGTAAATCTGTTCATATCATACAT-TTCAATCGTA-TTAAA---------------TTAAGTT---AAT----T----T-CA-GT--ATG----CTTACACAAA-TCTTAAA-TA-GATGAAACATAA-TTTCCAAA--TGGA-TTAGT-T-GTAGTACCATTGCTGAATAACTCGTAAAATAGAAATACT-AATTC------TAAAAA-TTCT-TTTT-CTA----TATTTT--ATTATAACAT-TGAA-GATGCACATTT-CAG---------CG----TTC--GCA-CA-----------------AATGTTCAAA-GGACA-TGTC-AGATAGCATGA-TT-T--CTCACTGC-ACTGATTAAGAACTT-ATAATCAAACAC-GCTA-ATGCTTGACAAAAAAAGCATGT-CGA-TGTGAAA--CATTGTA-GTTGTACTACTAATTTTATGGGGGTGG-TGGGGGGGAAACTTCACAAAA
gi|4 : ttggcTTTGCCTA--TTTT--GCGCTATGTGACA-TTG-A--T---ACTACTTTA-CCTTACGTTACAGA-CAGGCGACGTT--ACCCTTGT-CCTCGC-ACG-CATCTGA------------C-GCAAAA-TAG-CTCAA--TTTTT-GT-T-TATTCC--TTT--TT--CT-TA------------------A-TAATTA-CC-GACTTAT-TTA-TCTTTAAAA-AAAC-------A--CTCATATTTTAGATAATATTTTT-TGTATGAAAA-GTATTTAATTTCCATAAAAAAAACGT-AAT-TTT--ATTGTT-TA-AATCAGC-ACATGAAAAAGA--ATCG-TCGAAAAGTAATGAAAACATGAAAACCAATTTTTAAAAATCCGGTTTTTTTTCAC-ACAAAGAGAGGAACGTTATTAAAATGACATT-AGAAGACGAATAAGACAGTCATGCGGAAAA-AGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCTAAAGAGAGTCATGTT--TTGTTAGCGCA-C----TT------CTGACATTCTTGA-TGTC-GAAATGAAA-ATTT-GTAT-AAA----------ATG-ACATTTTT----ATGTTT-GC-----AAAAATGCATGCGATATCATT-TACTA-TTATTATGAAATATTAATGTT-------T-A----TTTCC-----ATGAACTATTTCAAAATACATGA-ATATTATC-AACAG-GTG--TTTTTGACGGTAAAATAAT-TATAA-CT-AT-GCGAATTATCATTCAT-ATTGTTCACTTAGAATTTTTTTTATC-ATCGTTTA-TTA-T-T-CTTATAACGTC-AATT-CATAA-TATGA-TCTCAA-CTATTGTGAG-AAAAAA---TCAAATACATCGTTGTATAAATAC-TCTTTAA-GAGC--------A-CTTGTA-GATACTATTC-AAATAC--AAACAATCTCAAAT---TGTGTACTTGCGTTAATGCATTGT-A-CGTTAATGCACTCT-GA-TAGTTT-CATCATTTTCTT-A----CC-ATCAGT-TTCTAAATACA-AACTG-AA--TTGCACCGTATTGGTTGGTCAGAAAC-T-GACTCCCTCTAGCA-TCCAATAAACGCAATCGACA-----------AAAAA----------------CAATGTATTATTCTTTAATGGTTGAGGGGCCATGGAA-CAATAAGAAAAA-TATTTCCCGCACATGTAAATGCAAAACACT-AA-------AGACA-----TGTATATATCTT-AC---TGTAG---TGTTCATG-----CA--TTTCATCGTA-TTGAA-----------TTAATTAAGTTTTAAAA----T----TTCT-CT--ATA----TTTACACAAA-TCTT-AAATA-AATGAAATATA---------------A-T-AAT-T-GAAGTATCATTGCCGAATAACTCGTAAAAAAGAAATACT-AATTC------TAAAAA---CTATTTTTCTA----TATTCT--ATTGTAGCAT-TGAAATATGCACATTTCAGG-GTT-CGCACGGATC-TT--GAA-CAGTGCACGGGCTT-GA-CACTTCTC-AAAGGACA-TGTC-AGAGGGC-CGG-AC-TTTCTCAATGC-ACTGATTTGGAACTT-AAANNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAT----------TAATTTCATGGG---AGTAAGAG
gi|5 : tcTTTGCCTA--TTTT--GTGCTATGTGACG-TTG-A--T---ACTACTTTA-CGTTACGTCACAGA-CAGGCGACGTT--ACCCTTGT-CCTCAC-ACG-CATATGA-A--A-CAATGAC-GCAAAC-TAA-CGCAA--TTTTT-GT-C-TATT---------TTTTTT-TATC-------AAAAA---GA-TAATTA-CC-GACTTAT-TTA-TCT--A-------TTTTTTAAA--CTCTTATTTCAGATCATATTTTT-GGAATGAAAA-GTATTTCATTTCCATAAAAAA--CA---AT-TATTTATTGTT-TA-AATCAG-AACCAGAAAAAGC--ATCG-TCGAAAACTAATGA--------AAACCAATTTTTAAAAATCCGGATTGTTTTCAT-ATGAAGAGACGAAACTTATTAAAATGACATT-AGAAGACGAATAAAATAGGTATGCGG-AAACAGTTATC-CAAT-TTTAATTATCTTTTAAAATATTGATTGCCAAAAAGACTCGTGTGGTTTGTTTGCGCAAC----TT------CTGACGTTCTGGATTGT-GGGAATTACT-TTTTC-TAT-AAA----------ATT-ATA-TTTTTTTAA-GTTT-GC----AAAAATTGTATGCGATATCGTT-TACGA-TTATTATGAAATAGCAATGTT-------T-A----TTTCC-----ATGG-------------AC------TATT-TCAAAATGCATGAATATTTGACGGTGAAATAAT-TATAA-AT-AT-GCGAATTATCATCG-TTATTGTTCACTTATAATTTTC-TAATC-ATGATTTA-TTATT-C-C---TAACGTT-AATT-TATGA-TATAA-TATCAACC-ATTGTTAGAAAAAAC---GCAAATATATTGTTGTATAAATAC-TCTTTAA-AAGCACTTCATGA-CTTGAA-GAAACAATTC-AAATAC--AATCGAACTCAAATATTCTTGTACTTTCGTTAAT------------TTAATG--CTCT------TCT------ATTTTTTC-A----AC-ATCAGT-TTCTAAATAT--AACTG-TATTTTGCATCGTATTG--CGGTCAGAAAA-T-GTCTCTCTCTAGCA-TCCAAGAAATTCAATCGACA-----------AAAAA----------------CAATGTATTATTTTTCGATGccg
gi|6 : tcATGA-TATCAAC-TATTGTTAGAAAAAAA---GCAGATATATTGTTGTATAAATAC-TCTTTAA-TGGC--------A-CTTTTA-GAAAATATTCAAA-TAC--AAACGAACCCAAATATCCGTGTACTTGCGTCAATGTATTGT-A-CGTTAATGCACTCT-GA-TATTTT-CGGAATTTTCTT-A----TC-ATCATT-TTCTAAATAC--AA-TG-TATTTTGCACCGTATTG--TGGTCAGAAAA-T-GACTCACTCTAGCA-TCCAATAAATGCAATCGACA-----------AAAAA----------------CAATGTATTAATCTTCGATGGATGA-ATTCCATGGAA-CAATGAGAAACATTGTTTCCTGCACATGTAAATGCAAAACATC-GAATATTT-AGAAAA-GCCTATATATATCTT-ACTG-TGTAAATCTGTTCATA-----CA--TTTCATCGTA-----------------TTAATTAAGTT---AA-----T----TTCA-GT--ATG----CTTACACAAA-TCTT-AAATA-GATGAAACATAA-TTTCCAAA--TGGA-T-AAT-T-GTAGTACCATTGCTGAATAACTCGTAAAATAGAAATACT-AATTC------TAAAAA-TTC--TTTTTCTA----
gi|7 : TATAA-CT-AT-GCGAATTATCATTGAT-ATTGTTCACTTAGAATTTTCT-AATC-ATCGTTCA-TTA-TTC-C---TAACGTCAATTTGTA--A-TATCA-TATCAAC-TATTGTTAGAAAAAAA---GCAAATATATTGTTGTATAAATAC-TCTTGAA-CAGC--------A-CTTGTA-GAAAGTATTCAAA-TAC--AAACAAACCCAAATATCCGTGTACTTGCATTAATGCATTGT-A-CGTTAATGCACTCT-GA-TATTTT-CAGAATTTTCCT-C----TC-ATCAGT-TTCTAAATAC--AACTG-TATTTTGCACCGTATTG--CGGTCAGAAAA-T-GACTCCATCTAGCA-TCCAATAAATGCAATCGACAAAAAAACCCCTAAAAA----------------CAATGTATTATTCTTCGATGGTTGAGAAGCCATGGAA-AAGTGAGAAACGTTCTTTCCCGCACAGGTAAATGCAAAACACT-GAATATTT-AGACGA-TCCTATAGCTATCTT-ACTG-TGCAG---TGTTTATA-----TAT-
gi|8 : taatC-GCAAAA-TAA-CGCAA--TTTTT-GT-C-TATTCC--TGT--TTTTCG-TATT-------GAAAA---GG-TAAATA-CC-GACTTAT-TTA-TCT--AAAA-ATTTTA-----A--CTCATATTTTAGATAATATTTTC-TGTATGAAAA-GTGTTTCATTTCCATAAAAAA--CGT-AA--TTTTTGTTGGT-TA-AATCAGC-ACCTGAAAAAGC--ATCG-TCGAAAACTAATGAAAACATGAAAACCAATTTCTAAAAATCCGGA-TTTTTTCAC-ACGAAGAGACGAAAGTTATTAAAATGACATT-AGAAGACGAATAAGACAGCCATGCGGAAAACAATTATC-CAAT-TTTAATTATCTTTTAAAATAT---TTGTTAAAAAGAGGCA--TA--ACGTTCGCGCAGCTTATTT------CTGACGTTCTGGATTGTC-GGAATG--A-TTTTTTTTT-AAA----------a
gi|9 : TGCAAAACACT-GAATATTTAAGACAAGGCCTATGTCTTTCTTGACTGCTGTAG---TGTTCATA-----CA---TTCATCGTA-TTGAA-TCTCTA-GATTTAATTAAGTT---GATGACGTTAAATTCA-GT---TGCTTCCTTACACAAACTCT-----------------TAA-TTTTCAAA--TAGA-T-AA---------------GTTGAGTAACTCGTAAAAAAGAAA-ACC-GATCCCTGGCTTTAAAA-CAC---------AGGACCATTGT--ATT----CAT-TGAAA-ATGCACATTTTCAG-GTTCCGCACTAATTCTT--GAACCAGTGCACGGGCTTCTTTCAA-TTTCATAA-GACA-TGTC-AGAGGGCATGA-TTGTGTTCCACTGCAATTGATTTCGAACTT-Ataa