lowQualScore : 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 4 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22 777777777 4444444 4 999999999999 99999999 4 4 44 6666666 44 2 2 22 66666666666666666666666 4 1 1 1 444444444444 1 44 2 44 1 666666666666666666666666666666666 222222222 1 1 1 999999999 4 222 4 3 2 88888 1 888888888888888888888888888 22 11 1 1 1 222 3333 2222222222222222222222222222222222222222222222222222222 222 1 11 2 1111 44444 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 333 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1
lowQualScore : 5 6 6 6 0 2 0 4 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 77 2 2 3 333333333 0000000 0 999999999999 6 6 77777777 0 6 0 6 6 66 3333333 22 7 2 0 2 77 66666666666666666666666 0 5 5 5 444444444444 2 5 2 77 0 77 3 5 999999999999999999999999999999999 888888888 6 3 3 7 6 888888888 0 7 0 3 555 0 1 8 0 77777 6 3 6 555555555555555555555555555 22 6 6 7 00 8 6 3 6 0 3 2 2 0 111 1111 8 8888888888888888888888888888888888888888888888888888888 555 2 0 33 0 4444 44444 3 2 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444 555 1 33 444 33 000 2 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 66 777 4 66 0 5 8 5
lowQualScore : . . . . . . . . ............................................................................................................................................................................................................................................................................................................................................................................. . .. . . . ......... ....... . ............ . . ........ . . . . . .. ....... .. . . . . .. ....................... . . . . ............ . . . .. . .. . . ................................. ......... . . . . . ......... . . . . ... . . . . ..... . . . ........................... .. . . . .. . . . . . . . . . ... .... . ....................................................... ... . . .. . .... ..... . . ..................................................................................... ... . .. ... .. ... . ........................................................................................................................ . .. ... . .. . . . .
lowQualScore : 0 0 0 0 0 5 5 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 55 5 5 0 000000000 0000000 0 000000000000 0 0 00000000 0 0 0 0 0 00 0000000 55 5 5 0 5 55 00000000000000000000000 0 5 0 0 000000000000 5 5 5 55 0 55 0 5 555555555555555555555555555555555 555555555 7 3 3 3 0 333333333 7 3 0 7 777 0 7 7 8 66666 7 3 7 000000000000000000000000000 33 7 7 0 33 3 7 3 7 0 2 5 5 0 000 8888 2 7777777777777777777777777777777777777777777777777777777 222 5 0 88 0 8888 55555 2 5 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444 444 0 44 111 22 444 9 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 11 000 0 99 9 0 9 7
consensus : NNNTCAGATATGTATTAAAAACACANAGNTCCCTNAGGTATATATACTAATATTGAAATGTTTGACGGTAC-CGCTAATCTAATAATGTACTAGTAGCTTGATTTCNTTAAGCGTGATATCTGAAAAATTGGTGGTNTATTCTGAGACACGCAATACCACATCCT--G-----TTGTATGTATAGTCATAGATAATTCAGATA---TGTANTANAAACACANAGACCCCTTAGGTATGTAGATATCTCACTAATATCGAAATGTTTGACGGTACCG-CTAATCTAATAATGTACTAGTAGCTAATTTCATTA----TGATATC-TGAAAA-ATGATGA---TTTATTCTGAGACACGCAATA--CCACATCCT-GTTGTATGTATAGTCATAG---ATAATTCAGATATGTATTANAAACACANAGNTCCCTTAAGGTAGATATNTATACTAATATTGAAATGTTTGAC---GGTA-CCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTA----TGA-TATCTGAAAAATGATGATTTATT-CTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGATAA-GTTCAGATATNTATTAAAACANACACAGCTCCTTTTAAGGGATANATATGCT-CAGTATCGAT-GGGATAATTCTGATACTTGATACCACTTCTCGACACCTGTATTGNNANCAAAT-ANATCAGATATNTACCAATAGACCTCTGAGTTCGTTACGTTTTGCNGTTGAATTTTTCTTTCA-CAGGTACCTAAATAAATGGGGTGATTTCCTTAAGCGTGGTATCTGAAAAT-GG-TGGTAT-ATCAAATGTG-TG--A-TTTTTTTCATT-CAATCTNTAT-T-ATTTT-CAAATG-AAACA-TTGAGGTGGAAAGTT-TA--TTCGTA-TTTTG-CATT-GCAAAG---GTTA----AGGTAA-C-----GGGAAACTTGTATG-AGCGTGAACTTTAN-AAATGCA-AAG-C-TGTG-ACTTTTGGCGA-TC-TAAAT--GAACCCGA-TAG-ATA-N-------TCACA---CAATCCATA----GATA-A---C-T-TTATCATGTTAATTGACTA-TGGG--TAATTT-T--AACCTTTAT---ATACCTTTAGTAGCTGGC-TA-CTA-G-------T-AGCT-G-A----C----TTACT-----TAC----TT---G-AA-GTA-GCCGGT-TT----ACT---AGTAGCT--GG---C--TACTAAA-GTAGCTAA-CTTTT-TT-C---C---CTT------GTTC-----A---AC--------A-GTA---GC-TGGCTA-ACT-AG-T-------AGCT--AACTTTTC-TC-TNTTCTA----CAGTA--GCCAG-TTTACT--AGTA---GC-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
Reference ( gi|1 ) : AGGTCAGCTATATATCAGAAAC-CACAGGTCCTTAAGGTATCCCCA--AACAT-GAA----TTGACGGTAGACACTAGAC-AA-AA-GT-TTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAAC-C-CAATA-TACACTCTTCGACTACTTGTATTTA-----ACAGAAAA-----ATACTTTTTATTAGAAACACACAG-TTCCTTAAA---G----TATCCCACAAATATTGAAAT-TT---CGGTATCATCCAAAC-AA-AAGATA--AGTAGCAGATTTT-TTAAGCGTGATATCATGAAGATATGATGAAAGTT--TCC---GACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAAT-GTTCATAATC----TACGTA--ACAAACACAGAGATTT-T-----TAGATATCCATAC-AATATT-AAATGTT-GATCGGGGTAGCCACTAATCTAATAATATACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATG-TGACTTATTTCTGAGACACACAATATCACATCC-ATTGTATGT-TA-TC-TAGATAAAGTTCCGATATCTATTAAAA-ACACA--GCTC---TTAAGA-ATACATATGCTGTAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTAT-GTCACCAAATCAGATCAGATATCTAC--ATA-ACCTCTGAGTTCGTTACGTTT--CAGTTGAATTTTCATTTCAACAGGTACGTAAA-----AGGGTGATTTCCTTAAGCGTGATATCTGAAAAT-GG-TGGTATTATCAAATGTGGTGGGAGTGTCTTTCATTACAATCTGTAT-T-ATTTTACAAATGCAAACAGTTGAGGTGGAAAGTTGTGAGTTCGTA-TTTTG-CATT-GCA--G---GTTA----ACGTAA-T-----GGGAAGTTTGTATG-AGCTTGAACTTTAG-AATTGCA-AAG-C-TGTG-ACTTTTGGCGA-TC-T-AAT--G-ATCCGA-T-G-ATA-C-------TCACA---CAATTCATA----GATA-A---T-T-TTA-CATGTTACTTGACTA-TGGG--TAA-TT-T--AACCTTTA----ATACCTTTAGTA-CTGGCGTAGCTA-G-------T-AGCT-G-A----C----TTATT-----TAC----TT---G-AA-GTA-GCTGGTATT----ACT---AGTAACT--GG---C--TACTAAAGGTAGCTAA-CTTTT-TTAC---C---CGT------GTTC-----A---ACC-------G-GTA---GC-TGGCTA-ACT-A--T-------AGCC--AACTTTTC-TCGTGTTCTAG---CAGTACGGGCAGGTTTACT--AGTA---GC-TGGT--TACTAGTAGCTAAC-TTGACC-GATC
gi|3 : TCAGATATGTATTAAAAACACACAGCTCCTTAAGGTA
gi|3 : ctagtacaaacacagagatcccttagatatatatactaatattgaaatgtttgacggtaccgctaatctaataatgtactagtagctaatttcattatgatatctgaaaaatgatgatttattctgagacacgcaataccacatcctgttgtatgtatagtcatagataatAAACACAGAGATCCCTTAGATATATATACTAATATTGAAATGTTTGACGGTAC-CGCTAATCTAATAATGTACTAGTAGCT-AATTTCATTA----TGATATCTGAAAAAT-GATGATTTATTCTGAGACACGCAATACCACATCCT--G-----TTGTATGTATAGTCATAGATAATTCAGATA---TGTATTAAAAACACACAG-CTCCTTAAG---GTAGATATCTC---AATATCGAgatatctcaatatcgatgggatattctgatacttgatatcacttctcgacacctgtatagtaacaaatatatcagatatataccataacctctgagttcgttacgttttcagttgatttttcatttcacaggtacctaaaatgggtggtttatcaaatgtatgattttttttcattcaatctatatttttttcaagtgaaacattgaggtggaaagtttttcgtattttgccattgcaaagtgttacgtactggatttgtatgagcttgaactttagaattgcagaagcctgtgactttgcgacctaaatgaacccgatagataatcaaatcaatcctgatatactttatcatgt
gi|2 : ctagtacTGATTTCCTTAAGCGTGATATCTGAAA-ATTGGTGGTATATTCtgggatattctgatacttgatatcacttctcgacacctgtatagtaacaaatatatcagatatataccataacctctgagttcgttacgttttcagttgatttttcatttcacaggtacctaaaatgggtggtttatcaaatgtatgattttttttcattcaatctatatttttttcaagtgaaacattgaggtggaaagtttttcgtattttgccattgcaaagtgttacgtactggatttgtatgagcttgaactttagaattgcagaagcctgtgactttgcgacctaaatgaacccgatagataatcaaatcaatcctgatatactttatcatgt
gi|3 : attctgatacttgataccactttcgacactgtattgtaacaaatagatcagtatctaccaatagacctctgagttcgttacgttttgccgttgaatttttctttcacaggtacctaaataaatggggTAGTACAAACACAGAGATCCCTTAGATATA----TAT---ACTAATATTGAAATGTTTGACGGTACCG-CTAATCTAATAATGTACTAGTAGCTAATTTCATTA----TGATATC-TGAAAA-ATGATGA---TTTATTCTGAGACACGCAATA--CCACATCCT-GTTGTATGTATAGTCATAG---ATAATTCAGATATGTATTAAAAACACACAGCTCC-TTAAGGTAGATATCT---C-AATATaaatgtgtgattttttcattcaatctgtatatgattttcaaatgaataaaattggggggaaagtttaattcgtattttggcattgcaaaggttagtaactagaattgtatgagctttgactttagaattgcaaagtcgtgatttttggcatctaaatgaacccgagtagatactttgtaatcacagatcaatcctgatgaacctttcatcatgttattgactataggtaattttaacctttatatcctttagtagctgggctatctatgtagctcgattttctaacttgaaagtacctggttactagtaactggctcgatagtagctaacttttcccctgttcaatgtgctggctactagtagcctaagcttttcgtcgcttaagtgccaatagccagttactgtagctggttactagtagcaacttaccggatct
gi|3 : c--ACAAACACAGAGATCCCT-----TAGATATATATACTAATATTGAAATGTTTGAC---GGTA-CCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTA----TGA-TATCTGAAAAATGATGATTTATT-CTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGATAA--TTCAGATATGTATTAAAA-ACACACAGCTCC--TTAAGG--TAGATAT-CT-CAATATCGAT-GGGATA-TTCTGATACTTGATATCACTTCTCGACACCTGTAT-AGTAACAAAT-ATATCAGATATATACC-ATA-ACCTCTGAGTTCGTTACGTTTT-CAGTTG-ATT----TTTC-------------------------ATTTC-----ACA-GGTACCT-AAAAT-GGGTGGT-TTATCAAATGTA-TG--ATTTTTTTTCATT-CAATCTATAT-T-TTTTT-CAAGTG-AAACA-TTGAGGTGGAAAGTT-T---TTCGTA-TTTTGCCATT-GCA--AAGTGTT-----ACGTAC-T-----GG---ATTTGTATG-AGCTTGAACTTTAG-AATTGCAGAAGCC-TGTG-ACTTT--GCGA-CC-TAAAT--GAACCCGA-TAG-ATA-A-------TCAAAT--CAATCC-T-----GATATA---C-T-TTATCATGTcgatgggatattctgatacttgatatcacttctcgacacctgtatagtaacaaatatatcagatatataccataacctctgagttcgttacgttttcagttgatttttcatttcacaggtacctaaaatgggtggtttatcaaatgtatgattttttttcattcaatctatatttttttcaagtgaaacattgaggtggaaagtttttcgtattttgccattgcaaagtgttacgtactggatttgtatgagcttgaactttagaattgcagaagcctgtgactttgcgacctaaatgaacccgatagataatcaaatcaatcctgatatactttatcatgt
gi|15 : ctagt-TAGATAA-GTTC-GATATCTATTAAAACAAACA--GCTCCTTTTAAAAGATACATA-GCT-CAGTATCG
gi|2 : gtagtataggcaATTCTGATACTTGATACCACTT-TCGACAC-TGTATTGTAAC-AAAT-AGATCAG-TATCTACCAATAGACCTCTGAGTTCGTTACGTTTTGCCGTTGAATTTTTCTTTCA-CAGGTACCTAAATAAATGGGGTGATTTCCTTAAGCGTGATATCTGAAAATTGG-TGGTATATTCAAATGTG-TGA---T-TTTTTCATT-CAATCTGTATATGATTTT-CAAATGAATAAAATTGGGG-GGAAAGTT-TAA-TTCGTA-TTTTGGCATT-GCAAAG---GTTA------GTAA-C-----TAGAA--TTGTATG-AGCTTTGACTTTAG-AATTGCA-AAG-T-CGTG-ATTTTTGGC-A-TC-TAAAT--GAACCCGAGTAG-ATA-CTTTGTAATCACAGATCAATCC-T-----GATG-AACCT-T-TCATCATGTTA-TTGACTA-TAGG--TAATTT-T--AACCTTTAT---AT-CCTTTAGTAGCTGGGCTATCTATG-------T-AGCTCG-A----T----TTTCT-----AAC----TT---GAAA-GTA-CCTGG--TT----ACT---AGTAACT--GG---C--T-CGATA-GTAGCTAA-CTTTT----C---C---CCT------GTTC-----A---AT----------GT----GC-TGGCT--ACT-AG-T-------AGCCTAAGCTTTTCGTC--GCTTAAGTGCCAATA--GCCAG--TTACT---GTA---GC-TGGT--TACTAGTAGC-AAC-TT-ACCGGATC
gi|6 : TATCTGAAATT-GG-TGGCAT-ACCAAATGTG-TG--AATTTCTT-CATT-CAATCTTTAT-G-ATTTT-CTAATG-AAACA-CTGAGGTGGAAAGCTTT---TTAATA-TTTTA-CATT-ACAAAG---GTTACGGTAGGTAACT-----GGGAAACT-GTATG-AGCGTGAACTTTAT-AAATGCA-AAG-C-t
gi|4 : GGTGGAAAGCT-T---TTCGTAGTTTTG-CATTTACAAAG---GTTA----CGGTAG-TAACTGGGGAAACTT-TATGGAGCGTGAACTTTAATAAATGCA-AGG-CCTGTGGACTTTTG-CGAATC-T-AATTGA-AACCAA-T-ATATAAT-------TCATA------TTCATACT--GCTA-A---CGT-TTATCATGTTACT-AACTAATGGG--TAA-TTCT--AACCTTTA-----TACGTTTAGTAGCTAGC-TA-CTA-A-------T-AGCT-G-A----C----TTACT-----TTC----TT-------------------TT----A-----AATAGCT--GG---C--TACTAA--GTAGCTAAACTTTT----C---C---C-T------GTTC-----A---A-----------GTA---GC-TGGCTGTGCT-AG-T-------AGCC--AACTTTTT-TCAT
gi|8 : tgTGGAAAGTT-TA--TTCGTA-TTTTA-CATT-GC----------A----AC-----T-----GGGAAA-TTGTA-------TGAACTTTAA-AAACTCA-AAGCC-TGTT-ATTTTTGGCGA-TCTT-GAT--GAACCCGATT-G-ATA-A-------TCACAAT-CAATCCttnnnnnnnnnnnnnnnnnnnnnnnnnttg
gi|14 : TTCGTA-TTTTG-CATT-ACAAAG---GTTACGGTAGGTAA-CTG---GGGAAACTT-TATG-AGCGTGAACTTTAT-AAATGCA-AAG-C-
gi|5 : t-ACCCGA-T---ATA-TAAA----TC-CA---CAAT-CACATCCTGATA-C---C-TATTATCATGTTAACTGA-TA-TGGAAATAA-TT-TTTAAGATATAT---ACACCTATA-CA-CT-------TTA-G-------TCAGCT-G-AGACTC----TTACTATCTCTA-----TT---GTAA-GTACGCTCGTCT------CT---AGTAATTAAGG---TCGTACTTA--GTAGCTAA-CTTCTCTTA---------GT------TTTA-----A---GTT-------AAGTA---GC-TGGCTA-TCT-A--
gi|11 : cgtgatgaactttggagactgatcttaagaaattgaacAATTC-T-----GATA-A---CCT-TTATCATGCGAAT-GACTA-TGTG--TAATTT-T--AACCTTTAAGATATACCTTTAGTAGCTGGC-TA-CTA-G-------T-AGCT-GNN----N----NNATT-----GACGTCATT---A-AA-ATA-atgatatgcttt
gi|9 : GTAGCTG-GCTAAAATT-AGCT-A-A----CATTTTTATT-----TTC----TTTCTG-AA--TA-GCCAGT--C----AGT---AGTAGCT--GG---T--TA-TACAAGTAGCTAA-CATTT-
gi|13 : agtaactaactttctcggttcagCTA-G-------T-AGCT-A-A----C------ATT-----T------T--------------CTG---TT----ACA---AGTAGCT--GG---C--CACTA---GTA-CTA---TTTT-TTCCTTTC---TTT------GCTT-----A---A-----------GTA---GC-CAGTT--ACT-AG-T-------ATCT--AAGTTTcgatc
gi|4 : ggttaTA-G-------T-AGCC-A-G----C----T-ATT-----TAA----AA---G-AAAGTAAGTCAGC--T----ATT---AGTAGCT--AG---C--TACTAAACGTAgccga
gi|10 : tgggtggaaagcttttcgtagttttgcatttacaaaggttacggtagtaactggggaaactttatggagcgtgaactttaataaatgcaaggcctgtggacttttgcgaatctaattgaaaccaatatataattcatattcatactgctaacgtttatcatgttactaactaatgggtaattctaaccttta-----TAC----T----G-CA-GTA-GCTAACGTTCTCAGCTTCAAGTAACT--GG---T--TACTCA---TAGCTAA-CTTTT-CTTT---CTTTCTT------TTTT-----G---A-----------GTA---GC-TAGTTA-CCA-A--T-------ACCT--AACagtagctaaacttttccctgttcaagtagctggctgtgctagtagccaacttttttcatttnnnnnnnnnnnnnnnnnnnnnnnnnttg
gi|16 : gc-AA-GTA-ACCAGT--T----CCT---AGTAGCT--GG---T--TACTA---GTAGCTAA-CTTTatagccaatc
gi|12 : tccacccTT----ACT---AGTAATT--GGCAAC--TATTACATGTAGCTAC-CTTTT-CTGG---T---CTTTTCTTGGTTC-----AAGTACT-------A-GTAGGTGCATGGCT--ACT-AG-T-------AGCC--AACTTTaccgatct
gi|11 : gT----ACT---AGTAGCC--AG---C--TACTAAAGGTAaccaatc
gi|13 : aattctgataacctttatcatgcgaatgactatgtgtaattttaacctttaagataT----ACT---AGTAACT--GG---C--TACTTAAGgctgnnnnnattgacgtcattaaaata
gi|4 : ggttactagtagctaacattttctgttacaagtagctggccactagtactattttttcctttctttgT---AGTAGCT--AG---C--TACTAA---TAGCTGA-CTTAC-TTTC---T-------------TTT-----A---A-----------ATA---GC-TGGCT--ACT-AAGT-------AGCTA-AACTTTTC-CC-TGTTCAAG---TAG--CTGGC---TGTGCT--AGTA---GC-tctaagtttgccga
gi|11 : tgggtggaaagcttttcgtagttttgcatttacaaaggttacggtagtaactggggaaactttatggagcgtgaactttaataaatgcaaggcctgtggacttttgcgaatctaattgaaaccaatatataattcatattcatactgctaacgtttatcatgttactaactaatgggtaattctaacctttatacgttT---AGTAGCT--GG---C--TACTA---GTAGCTcaacttttttcatttnnnnnnnnnnnnnnnnnnnnnnnnnttg
gi|9 : aattctgataacctttatcatgcgaatgactatgtgtaattttaacctttaagatataccttGTAGCT--GG---C--TA---AAATTAGCTAA-CATTT-TTAT---T---TTC------TTTCTGAATA---GCCAGTCAGTA-GTA---GC-TGGTTATACA-AG-T-------AGCT--AACATTTC-gnnnnnattgacgtcattaaaata
gi|17 : agtaactaactttctcggttcagGTAGCT--GG---C--TACTAA---TAGCCAA-CTTTT-CTgatc
gi|13 : --GG---T--TACTA---GTAGCTAA-CATTT-TC-----------T------GTT----------ACA-------A-GTA---GC-TGGCC--ACT-AG-T-------A-CT--A--TTTTT-TCCT-TTC-------------------TTTGCTTAAGTA---GC-CAGT--TACTAGTATCTAAG-TTTGCC-GAttctaagtagccagatattagtagc
gi|10 : G---C--TACTGCAG-TAGCTAA-CGTTC-TCAG---C-------------TTC-----A---A-----------GTA---AC-TGGTTA-CTC-A--T-------AGCT--AACTTTTC-TTTCTTTCT------------------TTTTTG--AGTA---GC-TAGT--TACCAATACCTAAC-ATAGCC-AATC
gi|9 : GTAACTAA-CTTT-----C---T---CG-------GTTC-----A-------------G-GTA---GC-TGGCTA-AAA-T--T-------AGCT--AACATTT--TTATTTTCTTT---CTGAATAGCCAG--TCAGT--AGTA---GC-TGGTTATACAAGTAGCTAACATT--TC-GATC
gi|16 : a------GTTC----------CT-------A-GTA---GC-TGGTT--ACT-AG-T-------AGCT--AACTTT
gi|12 : tccacccaagtaacca---ACT-------A-GTA---AT-TGGC-A-ACT-A--TTACATGTAGCT--ACCTTTTC-TGGTCTTTTCT---TGGTTCAAG------TACT--AGTAGGTGCATGGC--TACTAGTAGCCAAC-TTTACC-AATCaccgatct
gi|17 : gtt-GTA---GC-TGGCT--ACTAA--T-------AGCC--AACTTTTC-T----TTCTA-----AGTA--GCCAGA--TATT--AGTA---GC-
gi|16 : TTCCT--AGTA---GC-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
gi|11 : tccacccaagtaaccagT--AGTA---GC-TGGC--TACTAGTAGCTGNN-NNNATT-GAt
gi|17 : aattctgataacctttatcatgcgaatgactatgtgtaattttaacctttaagatataccttGTA---GC-TGGC--TACTAATAGCCAAC-TTcgtcattaaaata
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TTATATTCGAATCCTTGATAACTTTTATCATGTTACAAACTGTCGGTAATGTTAACCGTTCTACTATTACTACTGCTAAACTTTTTCAGCTTCAAACGTAGCTGCTTGCTATAGTAAATCAACGTTTCT
Alignments
lowQualScore : 22222222222222222222222222222222222222222222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 1 4 11111111111111111111111111111111111111111111111111 22 1 222 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 33 11 777777 1 1 1 333 2 4444 2 1 2 1 22 1 222 222 22 11 1 2 1 1111111 1 22 2 22 1 1 22222222 1 1111 1 3333 1 111 1 1111 1 2222 44444444444444444 1 1111 11111 1111111 222222 33333 11 1111 111 11 2222 4444444444444444444444444 11 2222 55555555555555555555555555 111 1111111 666666666666666666666666666666666666666666
lowQualScore : 5 6 6 6 0 1 1 6 1 77777777777777777777777777777777777777777777777777 77 11 6 7 777 5 1 6 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 6 00 1 1 1 77 999999 1 5 5 5 555 0 2222 0 5 0 5 7 7 6 7 00 5 1 888 6 999 44 1 44 3 0 5 0 6 6 7777777 3 1 7 1 22 3 22 1 7 3 3 99999999 7 9 3 0 2 0 7777 0 7777 0 1 777 0 4444 0 6 8888 5 666 5 1 5 88888888888888888 55 4 5 4 66 2 5 5 1 6 4444 6 77777 6 99 6 3 8888888 66 555555 5 77777 5 5 99 5 5 7777 6 99 6 111 99 5 88 8 66 8 8 8 1111 6666666666666666666666666 55 2 11 99 1111 5 22222222222222222222222222 444 6666666 5 55 5 777777777777777777777777777777777777777777 777 4 66 66 0 5
lowQualScore : . . . . . . . . . .................................................. .. .. . . ... . . . .................................................................................................................................................................................................................................................................. . .. . . . .. ...... . . . . ... . .... . . . . . . . . .. . . ... . ... .. . .. . . . . . . ....... . . . . .. . .. . . . . ........ . . . . . . .... . .... . . ... . .... . . .... . ... . . . ................. .. . . . .. . . . . . .... . ..... . .. . . ....... .. ...... . ..... . . .. . . .... . .. . ... .. . .. . .. . . . .... ......................... .. . .. .. .... . .......................... ... ....... . .. . .......................................... ... . .. .. . .
lowQualScore : 0 0 0 0 0 0 0 0 0 00000000000000000000000000000000000000000000000000 00 00 0 0 000 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 55 0 0 0 55 000000 0 5 0 5 000 0 5555 0 5 0 5 3 3 7 3 00 3 0 000 7 000 00 0 00 3 0 5 7 7 7 0000000 3 0 3 0 00 3 33 0 3 3 3 77777777 3 0 2 0 5 8 8888 0 2222 0 0 000 0 8888 0 7 7777 7 000 7 4 7 33333333333333333 44 3 7 3 77 1 7 7 4 7 2222 7 77777 7 22 7 5 6666666 77 999999 7 99999 7 7 33 7 7 2222 7 22 7 777 44 0 88 0 88 0 0 0 2222 2222222222222222222222222 88 0 00 22 8888 7 33333333333333333333333333 444 4444444 0 11 0 333333333333333333333333333333333333333333 888 4 99 66 9 0
consensus : NNNTCAGCTATATATCAGAAAC-CACAGGTCCTTAAGGTATCCCCA--AACAT-GAA----TTGACGGTAGACACTAGAC-AA-AA-GT-TTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAAC-C-CAATAT-ACACTCTTCGACTACTTGTATTTA-----ACAGAAAA-----ATACTTTTTATTAGAAACACACAG-TTCCTTA-------AAGTATCCCACAAATATTGAAAT--TT--CGGTATCATCCAAAC-AA-AAGATA--AGTAGCAGATTTT-TTAAGCGTGATATCATGAAGATATGATGAAAGTTT---CCGA--CACCTATTAATCGAACTCCTAATTGTTTGTATAGTAAT-GTTCATAATC----TACGTAGTACAAACACAGAGATCCCTTA---TAGATATNCATACTAATATTGAAATGTTTGACCGGGGTAGCCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATGATGACTTATTTCTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGATAA-GTTC-GATATCTATTAAAA-A-ACACAGCTCC--TTAAGA-ATACATATGCT-CAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTATTGTNA-CAAAT-AGATCAGATATCTACC-ATA-ACCTCTGAGTTCGTTACGTTTT-CAGTTGAATTTTTC-TTTCA-CAGGTACCTAAA-AAATGGGGTGATTTCCTTAAGCGTGATATCTGAAAA-TGGTGGTAT-A-TCAAATGTG-TGA---TTTTTTTCATT-CAATCTGTAT-T-ATTTT-CAAATG-A--AACA-TTGAGGTGGAAAGTT-T----TTCGTA-TTTT-G-CATT-GCAAAG-GTTA----AGGTA---ACT-GGGAAACTTGTATG-AGCNTGAACTTTAG-AANTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT----AAAT-GAAC--CCGA-TAGA-------TAA-TCACA---CAATC-CAT---GAT-A-AC--T-TT-ATCATGTTA-ATTGACTA-TGG--GTAA-TTTTAACCTTTA---TATACCTTTAGTAGCT-GGC-TA-CTA-GT-AGCT-GA----CTTACT-----TACTTG-AAGTA-GCTGGT-TTACTAGTAACT--GGC--TACTANA-GTAGCT-AACTTTTTT-CCCCTG--TTCAA-----AGTAGCTGGCTA-ACTA------GTAG-CTAA-CTTTTC-T---C-T-TTT-----CT------AGTA---G--CCAGTTTACTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
Reference ( family-1900 ) : NNNTCAGATATGTATTAAAAACACANAGNTCCCTNAGGTATATATACTAATATTGAAATGTTTGACGGTAC-CGCTAATCTAATAATGTACTAGTAGCTTGATTTCNTTAAGCGTGATATCTGAAAAATTGGTGGTNTATTCTGAGACACGCAATACCACATCCT--G-----TTGTATGTATAGTCATAGATAATTCAGATA---TGTANTANAAACACANAGACCCCTTAGGTATGTAGATATCTCACTAATATCGAAATGTTTGACGGTACCG-CTAATCTAATAATGTACTAGTAGCTAATTTCATTA----TGATATC-TGAAAA-ATGATGA---TTTATTCTGAGACACGCAATA--CCACATCCTG-TTGTATGTATAGTCATAG---ATAATTCAGATATGTATTANAAACACANAGNTCCCTTAAGGTAGATATNTATACTAATATTGAAATGTTTGAC---GGTA-CCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTA----TGA-TATCTGAAAAATGATGATTTATT-CTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGATAA-GTTCAGATATNTATTAAAACANACACAGCTCCTTTTAAGGGATANATATGCT-CAGTATCGAT-GGGATAATTCTGATACTTGATACCACTTCTCGACACCTGTATTGNNANCAAAT-ANATCAGATATNTACCAATAGACCTCTGAGTTCGTTACGTTTTGCNGTTGAATTTTTC-TTTCA-CAGGTACCTAAATAAATGGGGTGATTTCCTTAAGCGTGGTATCTGAAAA-TGGTGGTAT-A-TCAAATGTG-TGA---TTTTTTTCATT-CAATCTNTAT-T-ATTTT-CAAATG-A--AACA-TTGAGGTGGAAAGTT-T-A--TTCGTA-TTTT-G-CATT-GCAAAG-GTTA----AGGTA---AC--GGGAAACTTGTATG-AGCGTGAACTTTAN-AAATGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT----AAAT-GAAC--CCGA-TAGA-------TAN-TCACA---CAATC-CATA--GAT-A-AC--T-TT-ATCATGTTA-ATTGACTA-TGG--GTAA-TTTTAACCTTTA---TATACCTTTAGTAGCT-GGC-TA-CTA-GT-AGCT-GA----CTTACT-----TACTTG-AAGTA-GCCGGT-TTACTAGTAGCT--GGC--TACTAAA-GTAGCT-AACTTTTTT-CCCTTG--TTCAA---C-AGTAGCTGGCTA-ACTA------GTAG-CTAA-CTTTTC-T---C-T-NTT-----CTA-C---AGTA---G--CCAGTTTACTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
gi|1 : TCAGCTATATATCAGAAAC-CACAGGTCCTTAAGGTATCCCCA--AACAT-GAA----TTGACGGTAGACACTAGAC-AA-AA-GT-TTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAAC-C-CAATAT-ACACTCTTCGACTACTTGTATTTA-----ACAGAAAA-----ATACTTTTTATTAGAAACACACAG-TTCCTTA-------AAGTATCCCACAAATATTGAAAT--TT--CGGTATCATCCAAAC-AA-AAGATA--AGTAGCAGATTTT-TTAAGCGTGATATCATGAAGATATGATGAAAGTTT---CCGA--CACCTATTAATCGAACTCCTAATTGTTTGTATAGTAAT-GTTCATAATC----TACGTA--ACAAACACAGAGATT--TT----TAGATATCCATAC-AATATT-AAATGTT-GATCGGGGTAGCCACTAATCTAATAATATACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATG-TGACTTATTTCTGAGACACACAATATCACATCC-ATTGTATGT-TA-TC-TAGATAAAGTTCCGATATCTATTAAAA---ACACAGCTC---TTAAGA-ATACATATGCTGTAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTAT-GTCACCAAATCAGATCAGATATCTAC--ATA-ACCTCTGAGTTCGTTACGTTT--CAGTTGAATTTTCA-TTTCAACAGGTACGTAAA-----AGGGTGATTTCCTTAAGCGTGATATCTGAAAA-TGGTGGTATTA-TCAAATGTGGTGGGAGTGTCTTTCATTACAATCTGTAT-T-ATTTTACAAATGCA--AACAGTTGAGGTGGAAAGTTGT-GAGTTCGTA-TTTT-G-CATT-GCA--G-GTTA----ACGTA---AT--GGGAAGTTTGTATG-AGCTTGAACTTTAG-AATTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT-----AAT-G-AT--CCGA-T-GA-------TAC-TCACA---CAATT-CATA--GAT-A-AT--T-TT-A-CATGTTA-CTTGACTA-TGG--GTAA--TTTAACCTTTA----ATACCTTTAGTA-CT-GGCGTAGCTA-GT-AGCT-GA----CTTATT-----TACTTG-AAGTA-GCTGGTATTACTAGTAACT--GGC--TACTAAAGGTAGCT-AACTTTTTTACCCGTG--TTCAAC--C-GGTAGCTGGCTA-ACTA-------TAG-CCAA-CTTTTC-T---CGT-GTT-----CTAGC---AGTACGGG--CAGGTTTACTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTGACC-GATC
gi|10 : aggGC--TACTGCA-GTAGCT-AACGTTCTC-AGCTT-----CAA------GTAACTGGTTA--CTC------ATAG-CTAA-CTTTTC-T---T-TCTTT-----CT--------------------TTTTTGAGTAG---C-TAGT--TACCAATACCTAAC-ATAGCC-AATC
gi|11 : --GAT-A-ACC-T-TT-ATCATGCGA-AT-GACTA-TGT--GTAA-TTTTAACCTTTAAGATATACCTTTAGTAGCT-GGC-TA-CTA-GT-AGCT-G
gi|11 : aattctTAGTAG---C-TGGC--TACTAGTAGCTGNN-NNNATT-GAnnnnnattgacgtcattaaaata
gi|12 : aattctgataacctttatcatgcgaatgactatgtgtaattttaacctttaagatatacctt-AGTAATTGGC-A-ACTATTACATGTAG-CTAC-CTTTTC-TGGTC-T-TTT-----CT--------TG---GTTCAAGT--ACTAGTAGGTGCATGGC--TACTAGTAGCCAAC-TTTACC-AATCcgtcattaaaata
gi|13 : gttact--GGT--TACTA---GTAGCT-AACATTTT-----CTG--TT--A---CAAGTAGCTGGCC--ACTA------GTA--CTA---TTTTT-T---C-C-TTT-----CT--------TT---G--C----TTA--AGTAG---C-CAGT--TACTAGTATCTAAG-TTTGCC-GA
gi|14 : --TTCGTA-TTTT-G-CATT-ACAAAG-GTTACGGTAGGTA---ACTGGGGAAACTT-TATG-AGCGTGAACTTTAT-AAATGCA-AAG-C-
gi|15 : tGTA-GTATAGGCATAGATAA-GTTC-GATATCTATTAAAACAAACA--GCTCCTTTTAAAAGATACATA-GCT-CAGTATCG
gi|16 : ---AGTA---A--CCAGTTC-CTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
gi|17 : tccacccaGTAGCTGGCTA--CTA------ATAG-CCAA-CTTTTC-T--------TT-----CTA-----AGTA---G--CCAG-ATATTAGTAG---C-t
gi|2 : ATTCTGATACTTGATACCACTT-TCGACAC-TGTATTGTAA-CAAAT-AGATCAG-TATCTACCAATAGACCTCTGAGTTCGTTACGTTTTGCCGTTGAATTTTTC-TTTCA-CAGGTACCTAAATAAATGGGGTGATTTCCTTAAGCGTGATATCTGAAAATTGGTGGTAT-ATTCAAATGTG-TGA----TTTTTTCATT-CAATCTGTATATGATTTT-CAAATG-AATAAAA-TTGGGG-GGAAAGTT-TAA--TTCGTA-TTTTGG-CATT-GCAAAG-GTTA------GTA---AC--TAGAA--TTGTATG-AGCTTTGACTTTAG-AATTGCA-AAG-T-CGTG-ATTTTTGG----C-A-TCT----AAAT-GAAC--CCGAGTAGATACTTTGTAA-TCACAGATCAATC-C-T---GATGA-ACCTT-TC-ATCATGTT--ATTGACTA-TAG--GTAA-TTTTAACCTTTA---TAT-CCTTTAGTAGCTGGGC-TATCTATGT-AGCTCGA----TTTTCT-----AACTTGAAAGTA-CCTGG--TTACTAGTAACT--GGC--T-CGATA-GTAGCT-AAC--TTTT-CCCCTG--TTCAA---T--GT-GCTGGCT--ACTA------GTAGCCTAAGCTTTTCGT---C-G-CTTAAGTGC---C---AATA---G--CCAG-TTACT-GTAG---C-TGGT--TACTAGTAGC-AAC--TTACCGGATC
gi|3 : TAGTACAAACACAGAGATCCCTTA-----GATATATATACTAATATTGAAATGTTTGAC---GGTA-CCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTA----TGA-TATCTGAAAAATGATGATTTATT-CTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGATAA--TTCAGATATGTATTAAAA-ACACACAGCTCC--TTAAGG--TAGATAT-CT-CAATATCGAT-GGGAT-ATTCTGATACTTGATATCACTTCTCGACACCTGTA-TAGTAACAAAT-ATATCAGATATATACC-ATA-ACCTCTGAGTTCGTTACGTTTT-CAGTTG-ATTTTTCATTTCA-CAGGTACCTA---AAAT-GGGTGGTT-------------TATC---AAA-TG-----------------TA-TGAT--TTTTTTTCATT-CAATCTATAT-T-TTTTT-CAAGTG-A--AACA-TTGAGGTGGAAAGTT-T----TTCGTA-TTTT-GCCATT-GCAAAGTGTT-----ACGTA---CT--GG---ATTTGTATG-AGCTTGAACTTTAG-AATTGCAGAAGCC-TGTG-ACTTT--G----CGA-CCT----AAAT-GAAC--CCGA-TAGA-------TAA-TCAAAT--CAATC-C-T---GAT-ATAC--T-TT-ATCATGTt
gi|4 : cGGTGGAAAGCT-T----TTCGTAGTTTT-G-CATTTACAAAG-GTTA----CGGTAGTAACTGGGGAAACTT-TATGGAGCGTGAACTTTAATAAATGCA-AGG-CCTGTGGACTTTTG-----CGAATCT----AATT-GAAA--CCAA-TATA-------TAA-TT-CA---TA-TT-CATACTGCT-A-ACG-T-TT-ATCATGTTA--CTAACTAATGG--GTAA-TTCTAACCTTTA---TA--CGTTTAGTAGCT-AGC-TA-CTA-AT-AGCT-GA----CTTACT-----TTCT--------------T-TTA--AATAGCT--GGC--TACT-AA-GTAGCTAAACTTTT----CCCTG--TTCA------AGTAGCTGGCTGTGCTA------GTAG-CCAA-CTTTTT-T---C-
gi|5 : tgTG-AACTTTGGAGACTGA-TCTTAAGAAATTGAACACCCGA-TATA-------TAAATC-CA---CAATCACATCCTGAT-A-CC--TATT-ATCATGTTA-ACTGA-TA-TGGAAATAATTTTTAAGATATA---TACACCTATA----C---AC-T--TTA-GTCAGCT-GAGACTCTTACTATCTCTA-TTGTAAGTACGCTCGT-CT-CTAGTAATTAAGGTCGTACT-TA-GTAGCT-AAC----TT-CTCTTAGTTTTAAGTTA-AGTAGCTGGCTA-TCTA------ATatttnnnnnnnnnnnnnnnnnnnnnnnnnttg
gi|6 : cgtgaTATCTGAAAT-TGGTGGCAT-A-CCAAATGTG-TGA---ATTTCTTCATT-CAATCTTTAT-G-ATTTT-CTAATG-A--AACA-CTGAGGTGGAAAGCT-T-T--TTAATA-TTTT-A-CATT-ACAAAG-GTTACGGTAGGTA---ACT-GGGAAAC-TGTATG-AGCGTGAACTTTAT-AAATGCA-AAG-C-gatatgcttt
gi|7 : A-------TAT-TCG------AATC-CTT---GAT-A-AC--T-TTTATCATGTTACA--AACTG-TCG--GTAA-TGTTAACCGTTC---TA
gi|8 : ttTGGAAAGTT-T-A--TTCGTA-TTTT-A-CATT-GCAA----CT-----------------GGGAAA-TTGTATG-A------ACTTTAA-AAACTCA-AAG-CCTGTT-ATTTTTGG----CGA-TCT----TGAT-GAAC--CCGA-TTGA-------TAA-TCACAAT-CAATC-Cctattactactgctaaactttttcagcttcaaacgtagctgcttgctatagtaaatcaacgtttct
gi|9 : A-GTAACT-AACTTT------CTCGG-TTCAG------GTAGCTGGCTA-AA-A------TTAG-CTAA-CATTTT-T---A-T-TTT-----CTT-TCTGAATA---G--CCAGTC-AGTAGTAG---C-TGGTTATACAAGTAGCTAACATTT--C-GATC
Alignments
lowQualScore : 11 22222222 1 1 1 222 1 2222 1 1 1 1 1 111 1 222 11 1 1 1 1 1 1 1 1 1 222222 1 11111 1 333333 1 111 1 1111 1 222 3333333 1111 1 1111 11111 2222222 222 33333 22 1111 1111111 11111111 1 1 1111 3333333333333333333333333333333333 11 1111 3333333333333 111111 11 1111111 222222222 11111 444444444444444444444444444
lowQualScore : 88 44444444 1 5 5 5 000 5 3333 5 5 5 5 7 7 6 7 3 6 666 7 3 6 333 88 44 3 5 7 6 6 7 1 3 3 7 6 3 3 7 3 7 3 3 7 444444 7 3 0 2 0 44444 0 222222 0 0 777 0 4444 0 6 5 333 5 666 5 5 4444444 1111 5 5 1 5 4 5 3 77 1 5 5 1 6 4444 6 77777 6 99 6 3 1111111 6 7 777 5 22222 5 5 55 5 7777 6 99 6 8888888 6 66666666 6 3 6 6 3 7777 1 4444444444444444444444444444444444 11 99 5555 5 5 7777777777777 333333 66 6666666 5 55 111111111 22222 999999999999999999999999999 777 4 66 66 0 5
lowQualScore : .. ........ . . . . ... . .... . . . . . . . . . . ... . . . ... .. .. . . . . . . . . . . . . . . . . . . . ...... . . . . . ..... . ...... . . ... . .... . . . ... . ... . . ....... .... . . . . . . . .. . . . . . .... . ..... . .. . . ....... . . ... . ..... . . .. . .... . .. . ....... . ........ . . . . . .... . .................................. .. .. .... . . ............. ...... .. ....... . .. ......... ..... ........................... ... . .. .. . .
lowQualScore : 00 55555555 0 5 0 5 000 0 5555 5 5 5 5 3 3 7 3 3 7 777 3 3 7 333 33 00 3 0 3 7 7 3 0 3 3 3 7 3 3 3 3 3 3 3 3 777777 3 2 0 5 8 88888 0 000000 0 2 000 0 8888 0 7 7 666 7 000 7 7 9999999 4444 7 7 4 3 3 7 0 44 0 7 7 4 7 2222 7 77777 7 22 7 5 7777777 7 3 555 0 44444 7 7 00 7 2222 7 22 7 8888888 7 33333333 7 3 7 7 3 0000 4 8888888888888888888888888888888888 00 22 8888 7 1 6666666666666 666666 33 4444444 0 11 222222222 55555 999999999999999999999999999 888 4 99 66 9 0
consensus : NNNTCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTAGTACAAACACAGAGATCCCTTNTAGATATNCATACTAATATTGAAATGTTTGACCGGGGTAGCCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATGATGACTTATTTCTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AAGTT-C-GATATCTATTAAAAA-ACACAGCTCCTT---AAGGATACATATGCT-CAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTATTGTAA-CAAAT-AGATCAGATATCTACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTGAATTTTTC-TTTC-ACAGGTACCTAAA-AAAT-GGGTGATTTCCTTAAGCGTGATATCTGAAAA-TGGTGGTA-TA-TCAAATGT-GTG---A-TTTTTTTCATT-CAATCTGTAT-T-ATTTT-CAAATG-A--AACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTT-G-CATT-GCAAAG-GTTA----AGGTA---ACT-GGG-AAACTTGTATG-AGCNTGAACTTTAG-AANTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT----AAAT-GAAC--CCGA-TAGA-------TAA-TCACA---CAATC-CAT---GAT-A-AC--T-TTATCATGTTA-ATTGACTA-TGG--GTAA-TTTTAACCTTTA---TATACCT-TTAGTAGCT-GGC-TA-CTA-GT-AGCT-GA----CTTACT-----TA-CTTG-AA--GTA-GCTGGT-T--TACTAGTAACT--GGC--TACTA-A-GTAGCTAA-CTTTTTT--CCCT----GTTCAA--AGTAGCTGGCTA-ACTA------GTAG-CTAA-CTTTTC-T---C-T-TTT-----CT-----AGTAG--C-----CA-GTTTACTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
Reference ( family-1900 ) : NNNTCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTAGTACAAACACAGAGATCCCTTATAGATATNCATACTAATATTGAAATGTTTGACCGGGGTAGCCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATGATGACTTATTTCTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AAGTT-C-GATATCTATTAAAAA-ACACAGCTCCTT---AAGAATACATATGCT-CAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTATTGTNA-CAAAT-AGATCAGATATCTACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTGAATTTTTC-TTTC-ACAGGTACCTAAA-AAATGGGGTGATTTCCTTAAGCGTGATATCTGAAAA-TGGTGGTA-TA-TCAAATGT-GTG---A-TTTTTTTCATT-CAATCTGTAT-T-ATTTT-CAAATG-A--AACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTT-G-CATT-GCAAAG-GTTA----AGGTA---ACT-GGG-AAACTTGTATG-AGCNTGAACTTTAG-AANTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT----AAAT-GAAC--CCGA-TAGA-------TAA-TCACA---CAATC-CAT---GAT-A-AC--T-TTATCATGTTA-ATTGACTA-TGG--GTAA-TTTTAACCTTTA---TATACCT-TTAGTAGCT-GGC-TA-CTA-GT-AGCT-GA----CTTACT-----TA-CTTG-AA--GTA-GCTGGT-T--TACTAGTAACT--GGC--TACTANA-GTAGCTAA-CTTTTTT-CCCCT----GTTCAA--AGTAGCTGGCTA-ACTA------GTAG-CTAA-CTTTTC-T---C-T-TTT-----CT-----AGTAG--C-----CA-GTTTACTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
gi|1 : TCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTA--ACAAACACAGAGAT---TTTTAGATATCCATAC-AATATT-AAATG-TTGATCGGGGTAGCCACTAATCTAATAATATACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATG-TGACTTATTTCTGAGACACACAATATCACATCC-ATTGTATGT-TA-TC-TAGATAAAGTTCC-GATATCTATT-AAAA-ACACAGCT-CTT---AAGAATACATATGCTGTAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTA-TGTCACCAAATCAGATCAGATATCTA-CA-TA-ACCTCTGAGTTCGTTACG-TTT-CAGTTGAATTTTCA-TTTCAACAGGTACGTAAA-A----GGGTGATTTCCTTAAGCGTGATATCTGAAAA-TGGTGGTATTA-TCAAATGTGGTGGGAG-TGTCTTTCATTACAATCTGTAT-T-ATTTTACAAATGCA--AACAGTTGAGGTGGAAAG-TTGTGAGTTCGTA-TTTT-G-CATT-GC--AG-GTTA----ACGTA---A-T-GGG-AAGTTTGTATG-AGCTTGAACTTTAG-AATTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT-----AAT-G-AT--CCGA-T-GA-------TAC-TCACA---CAATT-CATA--GAT-A-AT--T-TTA-CATGTTA-CTTGACTA-TGG--GTAA--TTTAACCTTTA----ATACCT-TTAGTA-CT-GGCGTAGCTA-GT-AGCT-GA----CTTATT-----TA-CTTG-AA--GTA-GCTGGTAT--TACTAGTAACT--GGC--TACTAAAGGTAGCTAA-CTTTTTTACCCGT----GTTCAACCGGTAGCTGGCTA-ACTA-------TAG-CCAA-CTTTTC-T---CGT-GTT-----CT-----AGCAG--TACGGGCAGGTTTACTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTGACC-GATC
gi|10 : aggGC--TACTGCA-GTAGCTAA-CGTT-----CTCA----GCTTCA--AGTAACTGGTTA--CTC------ATAG-CTAA-CTTTTC-T---T-TCTTT-----CT----------------------TTTTTGAGTAG---C-TAGT--TACCAATACCTAAC-ATAGCC-AATC
gi|11 : AATT-C-T---GAT-A-ACC-T-TTATCATGCGA-AT-GACTA-TGT--GTAA-TTTTAACCTTTAAGATATACCT-TTAGTAGCT-GGC-TA-CTA-GT-AGCT-G
gi|11 : TAGTAG---C-TGGC--TACTAGTAGCTGNN-NNNATT-GAnnnnnattgacgtcattaaaata
gi|12 : aattctgataacctttatcatgcgaatgactatgtgtaattttaacctttaagatatacctt--AGTAATTGGC-A-ACTATTACATGTAG-CTAC-CTTTTC-TGGTC-T-TTT-----CT-------TGGTTC-----AA-GT--ACTAGTAGGTGCATGGC--TACTAGTAGCCAAC-TTTACC-AATCcgtcattaaaata
gi|13 : gttact--GGT--TACTA---GTAGCTAA-CATTTT-----CT----GTTACA--AGTAGCTGGCCA--CTA------GTA--CTA---TTTTT-T---C-C-TTT-----CT-------TTG--C----------TTA--AGTAG---C-CAGT--TACTAGTATCTAAG-TTTGCC-GA
gi|14 : -T---TTCGTA-TTTT-G-CATT-ACAAAG-GTTACGGTAGGTA---ACTGGGG-AAACTT-TATG-AGCGTGAACTTTAT-AAATGCA-AAG-C-
gi|15 : GTA-GTATAGGCATAGAT-AAGTT-C-GATATCTATTAAAAC-AAACAGCTCCTTTTAAAAGATACATA-GCT-CAGTATCG
gi|16 : -----AGTAA--C-----CA-GTTC-CTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
gi|17 : tccacccaGTAGCTGGCTA--CTA------ATAG-CCAA-CTTTTC---------TTT-----CTA----AGTAG--C-----CA-G-ATATTAGTAG---C-t
gi|2 : ATTCTGATACTTGATACCACTT-TCGACAC-TGTATTGTAA-CAAAT-AGATCAG-TATCTACCAATAGACCTCTGAGTTCGTTACGTTTTGCCGTTGAATTTTTC-TTTC-ACAGGTACCTAAATAAATGGGGTGATTTCCTTAAGCGTGATATCTGAAAATTGGTGGTA-TATTCAAATGT-GTG---A--TTTTTTCATT-CAATCTGTATATGATTTT-CAAATG-AATAAAA-TTGGGG-GGAAAG-TT-TAA-TTCGTA-TTTTGG-CATT-GCAAAG-GTTA------GTA---ACT-AGA-A---TTGTATG-AGCTTTGACTTTAG-AATTGCA-AAG-T-CGTG-ATTTTTGG----C-A-TCT----AAAT-GAAC--CCGAGTAGATACTTTGTAA-TCACAGATCAATC-C-T---GATGA-ACCTT-TCATCATGTT--ATTGACTA-TAG--GTAA-TTTTAACCTTTA---TAT-CCT-TTAGTAGCTGGGC-TATCTATGT-AGCTCGA----TTTTCT-----AA-CTTGAAA--GTA-CCTGG--T--TACTAGTAACT--GGC--T-CGATA-GTAGCTAA-C--TTTT-CCCCT----GTTCAA--TGT-GCTGGCT--ACTA------GTAGCCTAAGCTTTTCGT---C-G-CTTAAGTGCC-----AATAG--C-----CA-G-TTACT-GTAG---C-TGGT--TACTAGTAGC-AAC--TTACCGGATC
gi|3 : TAGTACAAACACAGAGATCCCTTA--GATATATATACTAATATTGAAATGTTTGAC---GGTA-CCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTA----TGA-TATCTGAAAAATGATGATTTATT-CTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AA-TT-CAGATATGTATTAAAAACACACAGCTCCTT---AAGG-TAGATAT-CT-CAATATCGAT-GGGATA-TTCTGATACTTGATATCACTTCTCGACACCTGTATAGTAA-CAAAT-ATATCAGATATATACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTG-ATTTTTCATTTC-ACAGGTACCT--A-AAAT-GGGTGGTT-------------TATC---AAA-TG-----------------T-ATG---ATTTTTTTTCATT-CAATCTATAT-T-TTTTT-CAAGTG-A--AACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTT-GCCATT-GCAAAGTGTT-----ACGT----ACT-GG----ATTTGTATG-AGCTTGAACTTTAG-AATTGCAGAAGCC-TGTG-ACTTT--G----CGA-CCT----AAAT-GAAC--CCGA-TAGA-------TAA-TCAAAT--CAATC-C-T---GAT-ATAC--T-TTATCATGTt
gi|4 : cGGTGGAAAG-CT-T---TTCGTAGTTTT-G-CATTTACAAAG-GTTA----CGGTAGTAACT-GGGGAAACTT-TATGGAGCGTGAACTTTAATAAATGCA-AGG-CCTGTGGACTTTTG-----CGAATCT----AATT-GAAA--CCAA-TATA-------TAA-TT-CA---TA-TT-CATACTGCT-A-ACG-T-TTATCATGTTA--CTAACTAATGG--GTAA-TTCTAACCTTTA---TA--CGT-TTAGTAGCT-AGC-TA-CTA-AT-AGCT-GA----CTTACT-----TT-CTT-----------------T--TA--AATAGCT--GGC--TACTA-A-GTAGCTAAACTTTT----CCCT----GTTC-A--AGTAGCTGGCTGTGCTA------GTAG-CCAA-CTTTTT-T---C-A-TTT-----
gi|5 : tgTG-AACTTTGGAGACTGA-TCTTAAGAAATTGAACACCCGA-TATA-------TAAATC-CA---CAATCACATCCTGAT-A-CC--TATTATCATGTTA-ACTGA-TA-TGGAAATAATTTTTAAGATATA---TACACCT-ATA----C---AC-T--TTA-GTCAGCT-GAGACTCTTACTATCTCTA--TTGTAA--GTACGCTCGT-C--T-CTAGTAATTAAGGTCGTACT-TA-GTAGCTAA-CTTCTCT-TAGTTTTAAGTT--A--AGTAGCTGGCTA-TCTA------ATnnnnnnnnnnnnnnnnnnnnnnnnnttg
gi|6 : cgtgaTATCTGAAAT-TGGTGGCA-TA-CCAAATGT-GTG---A-ATTTCTTCATT-CAATCTTTAT-G-ATTTT-CTAATG-A--AACA-CTGAGGTGGAAAGCTT-T---TTAATA-TTTT-A-CATT-ACAAAG-GTTACGGTAGGTA---ACT-GGG-AAAC-TGTATG-AGCGTGAACTTTAT-AAATGCA-AAG-C-gatatgcttt
gi|7 : AATC-CTT---GAT-A-ACT-T-TTATCATGTTACA--AACTG-TCG--GTAA-TGTTAACCGTTC---TA---CTATTA---------C-TA-CT------GCTAAA----CTTTTT-----CAGCTTC-AAACGTA-GCTGCT-TGCTA-TAGTAA
gi|8 : ttatattcgTGGAAAG-TT-TA--TTCGTA-TTTT-A-CATT-GCAA--------------------CT-GGG-AAA-TTGTATG-A------ACTTTAA-AAACTCA-AAG-CCTGTT-ATTTTTGG----CGA-TCT----TGAT-GAAC--CCGA-TTGA-------TAA-TCACAAT-CAATC-Catcaacgtttct
gi|9 : A-GTAACTAA-CTTT-----CTCG----GTTCAG---GTAGCTGGCTA-AA-A------TTAG-CTAA-CATTTT-T---A-T-TTT-----CTTTCTGAATAG--C-----CA-G-TCAGTAGTAG---C-TGGTTATACAAGTAGCTAACATTT--C-GATC
Alignments
lowQualScore : 11 2222222 1 1 1 222 1 2222 1 1 1 1 1 111 1 222 11 1 1 1 1 1 1 1 1 1 1 1 1 11111 1 333333 1 111 1 1111 1 222 3333333 1111 1 1111 11111 2222222 222 33333 22 1111 1111111 11111111 1 1 1111 3333333333333333333333333333333333 11 1111 1 1111 11111111 11 1111111 222222222 11111 444444444444444444444444444
lowQualScore : 88 5555555 1 5 5 5 000 5 3333 5 5 5 5 7 7 6 7 3 6 666 7 3 6 333 7 44 3 5 7 6 6 7 3 3 7 6 3 3 7 3 7 3 3 7 3 7 3 7 3 0 2 0 44444 0 222222 0 0 777 0 4444 0 6 5 333 5 666 5 5 4444444 1111 5 5 1 5 4 5 3 77 1 5 5 1 6 4444 6 77777 6 99 6 3 1111111 6 7 777 5 22222 5 5 55 5 7777 6 99 6 8888888 6 66666666 6 3 6 6 3 7777 1 4444444444444444444444444444444444 11 99 7777 5 2 7777 1 5 77777777 66 6666666 5 55 111111111 22222 999999999999999999999999999 777 4 66 66 0 5
lowQualScore : .. ....... . . . . ... . .... . . . . . . . . . . ... . . . ... . .. . . . . . . . . . . . . . . . . . . . . . . . . . . ..... . ...... . . ... . .... . . . ... . ... . . ....... .... . . . . . . . .. . . . . . .... . ..... . .. . . ....... . . ... . ..... . . .. . .... . .. . ....... . ........ . . . . . .... . .................................. .. .. .... . . .... . . ........ .. ....... . .. ......... ..... ........................... ... . .. .. . .
lowQualScore : 00 5555555 0 5 0 5 000 0 5555 5 5 5 5 3 3 7 3 3 7 777 3 3 7 333 3 00 3 0 3 7 7 3 3 3 3 7 3 3 3 3 3 3 3 3 3 3 3 3 2 0 5 8 88888 0 000000 0 2 000 0 8888 0 7 7 666 7 000 7 7 9999999 4444 7 7 4 3 3 7 0 44 0 7 7 4 7 2222 7 77777 7 22 7 5 7777777 7 3 555 0 44444 7 7 00 7 2222 7 22 7 8888888 7 33333333 7 3 7 7 3 0000 4 8888888888888888888888888888888888 00 22 3333 7 1 7777 7 7 11111111 33 4444444 0 11 222222222 55555 999999999999999999999999999 888 4 99 66 9 0
consensus : NNNTCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTAGTACAAACACAGAGATCCCTTTTAGATATNCATACTAATATTGAAATGTTTGACCGGGGTAGCCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATGATGACTTATTTCTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AAGTT-C-GATATCTATTAAAAA-ACACAGCTCCTT---AAGGATACATATGCT-CAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTATTGT-AACAAAT-AGATCAGATATCTACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTGAATTTTTC-TTTC-ACAGGTACCTAAA-AAATGGG-TGATTTCCTTAAGCGTGATATCTGAAAA-TGGTGGTA-TA-TCAAATGT-GTG---A-TTTTTTTCATT-CAATCTGTAT-T-ATTTT-CAAATG-A--AACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTT-G-CATT-GCAAAG-GTTA----AGGTA---ACT-GGG-AAACTTGTATG-AGCNTGAACTTTAG-AANTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT----AAAT-GAAC--CCGA-TAGA-------TAA-TCACA---CAATC-CAT---GAT-A-AC--T-TTATCATGTTA-ATTGACTA-TGG--GTAA-TTTTAACCTTTA---TATACCT-TTAGTAGCT-GGC-TA-CTA-GT-AGCT-GA----CTTACT-----TA-CTTG-AA--GTA-GCTGGT-T--TACTAGTAACT--GGC--TACTA-A--GTAGCT-AACTTTTTT-CCC-TGTTCA---A--AGTAGCTGGCTA-ACTA------GTAG-CTAA-CTTTTC-T---C-T-TTT-----CT-----AGTAG--C-----CA-GTTTACTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
Reference ( family-1900 ) : NNNTCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTAGTACAAACACAGAGATCCCTTNTAGATATNCATACTAATATTGAAATGTTTGACCGGGGTAGCCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATGATGACTTATTTCTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AAGTT-C-GATATCTATTAAAAA-ACACAGCTCCTT---AAGGATACATATGCT-CAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTATTGT-AACAAAT-AGATCAGATATCTACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTGAATTTTTC-TTTC-ACAGGTACCTAAA-AAATGGG-TGATTTCCTTAAGCGTGATATCTGAAAA-TGGTGGTA-TA-TCAAATGT-GTG---A-TTTTTTTCATT-CAATCTGTAT-T-ATTTT-CAAATG-A--AACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTT-G-CATT-GCAAAG-GTTA----AGGTA---ACT-GGG-AAACTTGTATG-AGCNTGAACTTTAG-AANTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT----AAAT-GAAC--CCGA-TAGA-------TAA-TCACA---CAATC-CAT---GAT-A-AC--T-TTATCATGTTA-ATTGACTA-TGG--GTAA-TTTTAACCTTTA---TATACCT-TTAGTAGCT-GGC-TA-CTA-GT-AGCT-GA----CTTACT-----TA-CTTG-AA--GTA-GCTGGT-T--TACTAGTAACT--GGC--TACTA-A--GTAGCT-AACTTTTTT-CCC-TGTTCA---A--AGTAGCTGGCTA-ACTA------GTAG-CTAA-CTTTTC-T---C-T-TTT-----CT-----AGTAG--C-----CA-GTTTACTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
gi|1 : TCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTA--ACAAACACAGAGAT---TTTTAGATATCCATAC-AATATT-AAATG-TTGATCGGGGTAGCCACTAATCTAATAATATACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATG-TGACTTATTTCTGAGACACACAATATCACATCC-ATTGTATGT-TA-TC-TAGATAAAGTTCC-GATATCTATT-AAAA-ACACAGCT-CTT---AAGAATACATATGCTGTAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTA-TGTCACCAAATCAGATCAGATATCTA-CA-TA-ACCTCTGAGTTCGTTACG-TTT-CAGTTGAATTTTCA-TTTCAACAGGTACGTAAA-A---GGG-TGATTTCCTTAAGCGTGATATCTGAAAA-TGGTGGTATTA-TCAAATGTGGTGGGAG-TGTCTTTCATTACAATCTGTAT-T-ATTTTACAAATGCA--AACAGTTGAGGTGGAAAG-TTGTGAGTTCGTA-TTTT-G-CATT-GC--AG-GTTA----ACGTA---A-T-GGG-AAGTTTGTATG-AGCTTGAACTTTAG-AATTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT-----AAT-G-AT--CCGA-T-GA-------TAC-TCACA---CAATT-CATA--GAT-A-AT--T-TTA-CATGTTA-CTTGACTA-TGG--GTAA--TTTAACCTTTA----ATACCT-TTAGTA-CT-GGCGTAGCTA-GT-AGCT-GA----CTTATT-----TA-CTTG-AA--GTA-GCTGGTAT--TACTAGTAACT--GGC--TACTA-AAGGTAGCT-AACTTTTTTACCCGTGTTCA---ACCGGTAGCTGGCTA-ACTA-------TAG-CCAA-CTTTTC-T---CGT-GTT-----CT-----AGCAG--TACGGGCAGGTTTACTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTGACC-GATC
gi|10 : aggGC--TACTGCA--GTAGCT-AACGTT----CTC-AGCTTC---A--AGTAACTGGTTA--CTC------ATAG-CTAA-CTTTTC-T---T-TCTTT-----CT----------------------TTTTTGAGTAG---C-TAGT--TACCAATACCTAAC-ATAGCC-AATC
gi|11 : AATT-C-T---GAT-A-ACC-T-TTATCATGCGA-AT-GACTA-TGT--GTAA-TTTTAACCTTTAAGATATACCT-TTAGTAGCT-GGC-TA-CTA-GT-AGCT-G
gi|11 : TAGTAG---C-TGGC--TACTAGTAGCTGNN-NNNATT-GAnnnnnattgacgtcattaaaata
gi|12 : aattctgataacctttatcatgcgaatgactatgtgtaattttaacctttaagatatacctt--AGTAATTGGC-A-ACTATTACATGTAG-CTAC-CTTTTC-TGGTC-T-TTT-----CT-------TGGTTC-----AA-GT--ACTAGTAGGTGCATGGC--TACTAGTAGCCAAC-TTTACC-AATCcgtcattaaaata
gi|13 : gttact--GGT--TACTA----GTAGCT-AACATTTT----C-TGTTAC---A--AGTAGCTGGCCA--CTA------GTA--CTA---TTTTT-T---C-C-TTT-----CT-------TTG--C----------TTA--AGTAG---C-CAGT--TACTAGTATCTAAG-TTTGCC-GA
gi|14 : -T---TTCGTA-TTTT-G-CATT-ACAAAG-GTTACGGTAGGTA---ACTGGGG-AAACTT-TATG-AGCGTGAACTTTAT-AAATGCA-AAG-C-
gi|15 : GTA-GTATAGGCATAGAT-AAGTT-C-GATATCTATTAAAAC-AAACAGCTCCTTTTAAAAGATACATA-GCT-CAGTATCG
gi|16 : -----AGTAA--C-----CA-GTTC-CTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
gi|17 : tccacccaGTAGCTGGCTA--CTA------ATAG-CCAA-CTTTTC---------TTT-----CTA----AGTAG--C-----CA-G-ATATTAGTAG---C-t
gi|2 : ATTCTGATACTTGATACCACTT-TCGACAC-TGTATTGT-AACAAAT-AGATCAG-TATCTACCAATAGACCTCTGAGTTCGTTACGTTTTGCCGTTGAATTTTTC-TTTC-ACAGGTACCTAAATAAATGGGGTGATTTCCTTAAGCGTGATATCTGAAAATTGGTGGTA-TATTCAAATGT-GTG---A--TTTTTTCATT-CAATCTGTATATGATTTT-CAAATG-AATAAAA-TTGGGG-GGAAAG-TT-TAA-TTCGTA-TTTTGG-CATT-GCAAAG-GTTA------GTA---ACT-AGA-A---TTGTATG-AGCTTTGACTTTAG-AATTGCA-AAG-T-CGTG-ATTTTTGG----C-A-TCT----AAAT-GAAC--CCGAGTAGATACTTTGTAA-TCACAGATCAATC-C-T---GATGA-ACCTT-TCATCATGTT--ATTGACTA-TAG--GTAA-TTTTAACCTTTA---TAT-CCT-TTAGTAGCTGGGC-TATCTATGT-AGCTCGA----TTTTCT-----AA-CTTGAAA--GTA-CCTGG--T--TACTAGTAACT--GGC--T-CGATA--GTAGCT-AAC-TTTTC-CCC-TGTTCA---A--TGT-GCTGGCT--ACTA------GTAGCCTAAGCTTTTCGT---C-G-CTTAAGTGCC-----AATAG--C-----CA-G-TTACT-GTAG---C-TGGT--TACTAGTAGC-AAC--TTACCGGATC
gi|3 : TAGTACAAACACAGAGATCCCTT--AGATATATATACTAATATTGAAATGTTTGAC---GGTA-CCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTA----TGA-TATCTGAAAAATGATGATTTATT-CTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AA-TT-CAGATATGTATTAAAAACACACAGCTCCTT---AAGG-TAGATAT-CT-CAATATCGAT-GGGATA-TTCTGATACTTGATATCACTTCTCGACACCTGTATAGT-AACAAAT-ATATCAGATATATACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTG-ATTTTTCATTTC-ACAGGTACCT--A-AAATGGG-TGGTT-------------TATC---AAA-TG-----------------T-ATG---ATTTTTTTTCATT-CAATCTATAT-T-TTTTT-CAAGTG-A--AACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTT-GCCATT-GCAAAGTGTT-----ACGT----ACT-GG----ATTTGTATG-AGCTTGAACTTTAG-AATTGCAGAAGCC-TGTG-ACTTT--G----CGA-CCT----AAAT-GAAC--CCGA-TAGA-------TAA-TCAAAT--CAATC-C-T---GAT-ATAC--T-TTATCATGTt
gi|4 : cGGTGGAAAG-CT-T---TTCGTAGTTTT-G-CATTTACAAAG-GTTA----CGGTAGTAACT-GGGGAAACTT-TATGGAGCGTGAACTTTAATAAATGCA-AGG-CCTGTGGACTTTTG-----CGAATCT----AATT-GAAA--CCAA-TATA-------TAA-TT-CA---TA-TT-CATACTGCT-A-ACG-T-TTATCATGTTA--CTAACTAATGG--GTAA-TTCTAACCTTTA---TA--CGT-TTAGTAGCT-AGC-TA-CTA-AT-AGCT-GA----CTTACT-----TT-CT----------------T-T--TA--AATAGCT--GGC--TACTA-A--GTAGCTAAAC--TTTT-CCC-TGTTC----A--AGTAGCTGGCTGTGCTA------GTAG-CCAA-CTTTTT-T---C-A-TTT-----
gi|5 : tgTG-AACTTTGGAGACTGA-TCTTAAGAAATTGAACACCCGA-TATA-------TAAATC-CA---CAATCACATCCTGAT-A-CC--TATTATCATGTTA-ACTGA-TA-TGGAAATAATTTTTAAGATATA---TACACCT-ATA----C---AC-T--TTA-GTCAGCT-GAGACTCTTACTATCTCTA--TTGTAA--GTACGCTCGT-C--T-CTAGTAATTAAGGTCGTACTT-A--GTAGCT-AACTTCTCT-TAG-TTTTAAGTTA--AGTAGCTGGCTA-TCTA------ATnnnnnnnnnnnnnnnnnnnnnnnnnttg
gi|6 : cgtgaTATCTGAAAT-TGGTGGCA-TA-CCAAATGT-GTG---A-ATTTCTTCATT-CAATCTTTAT-G-ATTTT-CTAATG-A--AACA-CTGAGGTGGAAAGCTT-T---TTAATA-TTTT-A-CATT-ACAAAG-GTTACGGTAGGTA---ACT-GGG-AAAC-TGTATG-AGCGTGAACTTTAT-AAATGCA-AAG-C-gatatgcttt
gi|7 : AATC-CTT---GAT-A-ACT-T-TTATCATGTTACA--AACTG-TCG--GTAA-TGTTAACCGTTC---TA---CTATTA---------C-TA-CT------GCTAAA----CTTTTT-----CAGCTTC-AAACGTA-GCTGCT-TGCTA-TAGTAA
gi|8 : ttatattcgTGGAAAG-TT-TA--TTCGTA-TTTT-A-CATT-GCAA--------------------CT-GGG-AAA-TTGTATG-A------ACTTTAA-AAACTCA-AAG-CCTGTT-ATTTTTGG----CGA-TCT----TGAT-GAAC--CCGA-TTGA-------TAA-TCACAAT-CAATC-Catcaacgtttct
gi|9 : -A--GTAACT-AACTTT----CTC-GGTTCA---G---GTAGCTGGCTA-AA-A------TTAG-CTAA-CATTTT-T---A-T-TTT-----CTTTCTGAATAG--C-----CA-G-TCAGTAGTAG---C-TGGTTATACAAGTAGCTAACATTT--C-GATC
Alignments
lowQualScore : 11 2222222 1 1 1 222 1 2222 1 1 1 1 1 111 1 222 11 1 1 1 1 1 1 1 1 1 1 1 1 11111 1 333333 1 111 1 1111 1 222 3333333 1111 1 1111 11111 2222222 222 33333 22 1111 1111111 11111111 1 1 1111 3333333333333333333333333333333333 11 1111 1 1111 11111111 11 1111111 222222222 11111 444444444444444444444444444
lowQualScore : 88 0000000 1 5 5 5 000 5 3333 5 5 5 5 7 7 6 7 3 6 666 7 3 6 333 7 44 3 5 7 6 6 7 3 3 7 6 3 3 7 3 7 3 3 7 3 7 3 7 3 0 2 0 44444 0 222222 0 0 777 0 4444 0 6 5 333 5 666 5 5 4444444 1111 5 5 1 5 4 5 3 77 1 5 5 1 6 4444 6 77777 6 99 6 3 1111111 6 7 777 5 22222 5 5 55 5 7777 6 99 6 8888888 6 66666666 6 3 6 6 3 7777 1 4444444444444444444444444444444444 11 99 7777 5 2 7777 1 5 77777777 66 6666666 5 55 111111111 22222 999999999999999999999999999 777 4 66 66 0 5
lowQualScore : .. ....... . . . . ... . .... . . . . . . . . . . ... . . . ... . .. . . . . . . . . . . . . . . . . . . . . . . . . . . ..... . ...... . . ... . .... . . . ... . ... . . ....... .... . . . . . . . .. . . . . . .... . ..... . .. . . ....... . . ... . ..... . . .. . .... . .. . ....... . ........ . . . . . .... . .................................. .. .. .... . . .... . . ........ .. ....... . .. ......... ..... ........................... ... . .. .. . .
lowQualScore : 00 5555555 0 5 0 5 000 0 5555 5 5 5 5 3 3 7 3 3 7 777 3 3 7 333 3 00 3 0 3 7 7 3 3 3 3 7 3 3 3 3 3 3 3 3 3 3 3 3 2 0 5 8 88888 0 000000 0 2 000 0 8888 0 7 7 666 7 000 7 7 9999999 4444 7 7 4 3 3 7 0 44 0 7 7 4 7 2222 7 77777 7 22 7 5 7777777 7 3 555 0 44444 7 7 00 7 2222 7 22 7 8888888 7 33333333 7 3 7 7 3 0000 4 8888888888888888888888888888888888 00 22 3333 7 1 7777 7 7 11111111 33 4444444 0 11 222222222 55555 999999999999999999999999999 888 4 99 66 9 0
consensus : NNNTCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTAGTACAAACACAGAGATCCCTTTTAGATATNCATACTAATATTGAAATGTTTGACCGGGGTAGCCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATGATGACTTATTTCTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AAGTT-C-GATATCTATTAAAAA-ACACAGCTCCTT---AAGGATACATATGCT-CAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTATTGT-AACAAAT-AGATCAGATATCTACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTGAATTTTTC-TTTC-ACAGGTACCTAAA-AAATGGG-TGATTTCCTTAAGCGTGATATCTGAAAA-TGGTGGTA-TA-TCAAATGT-GTG---A-TTTTTTTCATT-CAATCTGTAT-T-ATTTT-CAAATG-A--AACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTT-G-CATT-GCAAAG-GTTA----AGGTA---ACT-GGG-AAACTTGTATG-AGCNTGAACTTTAG-AANTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT----AAAT-GAAC--CCGA-TAGA-------TAA-TCACA---CAATC-CAT---GAT-A-AC--T-TTATCATGTTA-ATTGACTA-TGG--GTAA-TTTTAACCTTTA---TATACCT-TTAGTAGCT-GGC-TA-CTA-GT-AGCT-GA----CTTACT-----TA-CTTG-AA--GTA-GCTGGT-T--TACTAGTAACT--GGC--TACTA-A--GTAGCT-AACTTTTTT-CCC-TGTTCA---A--AGTAGCTGGCTA-ACTA------GTAG-CTAA-CTTTTC-T---C-T-TTT-----CT-----AGTAG--C-----CA-GTTTACTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
Reference ( family-1900 ) : NNNTCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTAGTACAAACACAGAGATCCCTTTTAGATATNCATACTAATATTGAAATGTTTGACCGGGGTAGCCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATGATGACTTATTTCTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AAGTT-C-GATATCTATTAAAAA-ACACAGCTCCTT---AAGGATACATATGCT-CAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTATTGT-AACAAAT-AGATCAGATATCTACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTGAATTTTTC-TTTC-ACAGGTACCTAAA-AAATGGG-TGATTTCCTTAAGCGTGATATCTGAAAA-TGGTGGTA-TA-TCAAATGT-GTG---A-TTTTTTTCATT-CAATCTGTAT-T-ATTTT-CAAATG-A--AACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTT-G-CATT-GCAAAG-GTTA----AGGTA---ACT-GGG-AAACTTGTATG-AGCNTGAACTTTAG-AANTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT----AAAT-GAAC--CCGA-TAGA-------TAA-TCACA---CAATC-CAT---GAT-A-AC--T-TTATCATGTTA-ATTGACTA-TGG--GTAA-TTTTAACCTTTA---TATACCT-TTAGTAGCT-GGC-TA-CTA-GT-AGCT-GA----CTTACT-----TA-CTTG-AA--GTA-GCTGGT-T--TACTAGTAACT--GGC--TACTA-A--GTAGCT-AACTTTTTT-CCC-TGTTCA---A--AGTAGCTGGCTA-ACTA------GTAG-CTAA-CTTTTC-T---C-T-TTT-----CT-----AGTAG--C-----CA-GTTTACTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
gi|1 : TCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTA--ACAAACACAGAGAT---TTTTAGATATCCATAC-AATATT-AAATG-TTGATCGGGGTAGCCACTAATCTAATAATATACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATG-TGACTTATTTCTGAGACACACAATATCACATCC-ATTGTATGT-TA-TC-TAGATAAAGTTCC-GATATCTATT-AAAA-ACACAGCT-CTT---AAGAATACATATGCTGTAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTA-TGTCACCAAATCAGATCAGATATCTA-CA-TA-ACCTCTGAGTTCGTTACG-TTT-CAGTTGAATTTTCA-TTTCAACAGGTACGTAAA-A---GGG-TGATTTCCTTAAGCGTGATATCTGAAAA-TGGTGGTATTA-TCAAATGTGGTGGGAG-TGTCTTTCATTACAATCTGTAT-T-ATTTTACAAATGCA--AACAGTTGAGGTGGAAAG-TTGTGAGTTCGTA-TTTT-G-CATT-GC--AG-GTTA----ACGTA---A-T-GGG-AAGTTTGTATG-AGCTTGAACTTTAG-AATTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT-----AAT-G-AT--CCGA-T-GA-------TAC-TCACA---CAATT-CATA--GAT-A-AT--T-TTA-CATGTTA-CTTGACTA-TGG--GTAA--TTTAACCTTTA----ATACCT-TTAGTA-CT-GGCGTAGCTA-GT-AGCT-GA----CTTATT-----TA-CTTG-AA--GTA-GCTGGTAT--TACTAGTAACT--GGC--TACTA-AAGGTAGCT-AACTTTTTTACCCGTGTTCA---ACCGGTAGCTGGCTA-ACTA-------TAG-CCAA-CTTTTC-T---CGT-GTT-----CT-----AGCAG--TACGGGCAGGTTTACTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTGACC-GATC
gi|10 : aggGC--TACTGCA--GTAGCT-AACGTT----CTC-AGCTTC---A--AGTAACTGGTTA--CTC------ATAG-CTAA-CTTTTC-T---T-TCTTT-----CT----------------------TTTTTGAGTAG---C-TAGT--TACCAATACCTAAC-ATAGCC-AATC
gi|11 : AATT-C-T---GAT-A-ACC-T-TTATCATGCGA-AT-GACTA-TGT--GTAA-TTTTAACCTTTAAGATATACCT-TTAGTAGCT-GGC-TA-CTA-GT-AGCT-G
gi|11 : TAGTAG---C-TGGC--TACTAGTAGCTGNN-NNNATT-GAnnnnnattgacgtcattaaaata
gi|12 : aattctgataacctttatcatgcgaatgactatgtgtaattttaacctttaagatatacctt--AGTAATTGGC-A-ACTATTACATGTAG-CTAC-CTTTTC-TGGTC-T-TTT-----CT-------TGGTTC-----AA-GT--ACTAGTAGGTGCATGGC--TACTAGTAGCCAAC-TTTACC-AATCcgtcattaaaata
gi|13 : gttact--GGT--TACTA----GTAGCT-AACATTTT----C-TGTTAC---A--AGTAGCTGGCCA--CTA------GTA--CTA---TTTTT-T---C-C-TTT-----CT-------TTG--C----------TTA--AGTAG---C-CAGT--TACTAGTATCTAAG-TTTGCC-GA
gi|14 : -T---TTCGTA-TTTT-G-CATT-ACAAAG-GTTACGGTAGGTA---ACTGGGG-AAACTT-TATG-AGCGTGAACTTTAT-AAATGCA-AAG-C-
gi|15 : GTA-GTATAGGCATAGAT-AAGTT-C-GATATCTATTAAAAC-AAACAGCTCCTTTTAAAAGATACATA-GCT-CAGTATCG
gi|16 : -----AGTAA--C-----CA-GTTC-CTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
gi|17 : tccacccaGTAGCTGGCTA--CTA------ATAG-CCAA-CTTTTC---------TTT-----CTA----AGTAG--C-----CA-G-ATATTAGTAG---C-t
gi|2 : ATTCTGATACTTGATACCACTT-TCGACAC-TGTATTGT-AACAAAT-AGATCAG-TATCTACCAATAGACCTCTGAGTTCGTTACGTTTTGCCGTTGAATTTTTC-TTTC-ACAGGTACCTAAATAAATGGGGTGATTTCCTTAAGCGTGATATCTGAAAATTGGTGGTA-TATTCAAATGT-GTG---A--TTTTTTCATT-CAATCTGTATATGATTTT-CAAATG-AATAAAA-TTGGGG-GGAAAG-TT-TAA-TTCGTA-TTTTGG-CATT-GCAAAG-GTTA------GTA---ACT-AGA-A---TTGTATG-AGCTTTGACTTTAG-AATTGCA-AAG-T-CGTG-ATTTTTGG----C-A-TCT----AAAT-GAAC--CCGAGTAGATACTTTGTAA-TCACAGATCAATC-C-T---GATGA-ACCTT-TCATCATGTT--ATTGACTA-TAG--GTAA-TTTTAACCTTTA---TAT-CCT-TTAGTAGCTGGGC-TATCTATGT-AGCTCGA----TTTTCT-----AA-CTTGAAA--GTA-CCTGG--T--TACTAGTAACT--GGC--T-CGATA--GTAGCT-AAC-TTTTC-CCC-TGTTCA---A--TGT-GCTGGCT--ACTA------GTAGCCTAAGCTTTTCGT---C-G-CTTAAGTGCC-----AATAG--C-----CA-G-TTACT-GTAG---C-TGGT--TACTAGTAGC-AAC--TTACCGGATC
gi|3 : TAGTACAAACACAGAGATCCCTT--AGATATATATACTAATATTGAAATGTTTGAC---GGTA-CCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTA----TGA-TATCTGAAAAATGATGATTTATT-CTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AA-TT-CAGATATGTATTAAAAACACACAGCTCCTT---AAGG-TAGATAT-CT-CAATATCGAT-GGGATA-TTCTGATACTTGATATCACTTCTCGACACCTGTATAGT-AACAAAT-ATATCAGATATATACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTG-ATTTTTCATTTC-ACAGGTACCT--A-AAATGGG-TGGTT-------------TATC---AAA-TG-----------------T-ATG---ATTTTTTTTCATT-CAATCTATAT-T-TTTTT-CAAGTG-A--AACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTT-GCCATT-GCAAAGTGTT-----ACGT----ACT-GG----ATTTGTATG-AGCTTGAACTTTAG-AATTGCAGAAGCC-TGTG-ACTTT--G----CGA-CCT----AAAT-GAAC--CCGA-TAGA-------TAA-TCAAAT--CAATC-C-T---GAT-ATAC--T-TTATCATGTt
gi|4 : cGGTGGAAAG-CT-T---TTCGTAGTTTT-G-CATTTACAAAG-GTTA----CGGTAGTAACT-GGGGAAACTT-TATGGAGCGTGAACTTTAATAAATGCA-AGG-CCTGTGGACTTTTG-----CGAATCT----AATT-GAAA--CCAA-TATA-------TAA-TT-CA---TA-TT-CATACTGCT-A-ACG-T-TTATCATGTTA--CTAACTAATGG--GTAA-TTCTAACCTTTA---TA--CGT-TTAGTAGCT-AGC-TA-CTA-AT-AGCT-GA----CTTACT-----TT-CT----------------T-T--TA--AATAGCT--GGC--TACTA-A--GTAGCTAAAC--TTTT-CCC-TGTTC----A--AGTAGCTGGCTGTGCTA------GTAG-CCAA-CTTTTT-T---C-A-TTT-----
gi|5 : tgTG-AACTTTGGAGACTGA-TCTTAAGAAATTGAACACCCGA-TATA-------TAAATC-CA---CAATCACATCCTGAT-A-CC--TATTATCATGTTA-ACTGA-TA-TGGAAATAATTTTTAAGATATA---TACACCT-ATA----C---AC-T--TTA-GTCAGCT-GAGACTCTTACTATCTCTA--TTGTAA--GTACGCTCGT-C--T-CTAGTAATTAAGGTCGTACTT-A--GTAGCT-AACTTCTCT-TAG-TTTTAAGTTA--AGTAGCTGGCTA-TCTA------ATnnnnnnnnnnnnnnnnnnnnnnnnnttg
gi|6 : cgtgaTATCTGAAAT-TGGTGGCA-TA-CCAAATGT-GTG---A-ATTTCTTCATT-CAATCTTTAT-G-ATTTT-CTAATG-A--AACA-CTGAGGTGGAAAGCTT-T---TTAATA-TTTT-A-CATT-ACAAAG-GTTACGGTAGGTA---ACT-GGG-AAAC-TGTATG-AGCGTGAACTTTAT-AAATGCA-AAG-C-gatatgcttt
gi|7 : AATC-CTT---GAT-A-ACT-T-TTATCATGTTACA--AACTG-TCG--GTAA-TGTTAACCGTTC---TA---CTATTA---------C-TA-CT------GCTAAA----CTTTTT-----CAGCTTC-AAACGTA-GCTGCT-TGCTA-TAGTAA
gi|8 : ttatattcgTGGAAAG-TT-TA--TTCGTA-TTTT-A-CATT-GCAA--------------------CT-GGG-AAA-TTGTATG-A------ACTTTAA-AAACTCA-AAG-CCTGTT-ATTTTTGG----CGA-TCT----TGAT-GAAC--CCGA-TTGA-------TAA-TCACAAT-CAATC-Catcaacgtttct
gi|9 : -A--GTAACT-AACTTT----CTC-GGTTCA---G---GTAGCTGGCTA-AA-A------TTAG-CTAA-CATTTT-T---A-T-TTT-----CTTTCTGAATAG--C-----CA-G-TCAGTAGTAG---C-TGGTTATACAAGTAGCTAACATTT--C-GATC
blockSeqs : GT CCCTT A T G T . . . . A . T T A G A . G CA A C C TTA A G . . A C C T . . A C A G T G A A . A T A G T T T G TATT . ATT . ATG . AAT . C . AA G GG T T ACGGTAG AGTA G G A C G G G AT A G C C G AGAC A TAAGA T AC G A TACTTTG A A GAT A ATACT G T CT A ATT A AA T AGATATA A GTAGCTGG . T T C C GACT T ATCTCTATTGTAAGTACGCTCGTCTC AA CG CA A G TTC T . AGTTAA TG TTACATG C AG TGGTCT AAGTG TTCTGAATAGCCAGTCAG GTG A TA AT G
blockSeqs : . A G A . . C A . C . . T . . . . T . . . C . . T . . . . . . A . . T . G TAC . AA . T . A . . . A . GC . . ACGGTAG A . . A T G . T T T . . C . . . A . . . A . . A AT . ATCCT . . C . ACT . . . TACA . GTAGCTG . . . . A . A CAGCTTCAAACGTAGCTGCTTGCTA . . TA . A TTT C . CAA A A . A TTTC . AAGTAGCCAGATAT . . . A .
blockSeqs : . . . . . A . G . A . . . . . G . . ACG A . . A C G . T G T . . . . . . A . . . A . . A T . TT . . G . AT . . . TAT . GTAGCTA . . . . . . A AACTTGAAAGTACCTGGTTAC . . A . T TCT C . CAA A G . C GTCG . AGTAACCAGTTCC . . . N .
blockSeqs : . . . . G . . AC A . . A C G . G G A . . . . . . A . . . A . . . . . T . . T . CT . . . TA . C . . . . . . T TTCTTTTA . . A . T TT A . AAT T A . A TCC . AATAGCCAGTTAC . . . T .
blockSeqs : . . . . A . . A . . . . . . . G T A . . . . . . T . . . T . . . . . T . . . . CA . . . TA . . . . . . . . A . . . T . AA A G . A TCA . TGGTTCAAGTAC . . . T .
blockSeqs : . . . A . . . . . . . . . . . A A . . . . T . . . . . . . . . . AG . G . A TAT . TTGCTTA . . . T .
blockSeqs : . . A . . . . TTTTT . . . . .
blockSeqs : . T . .
blockSeqCons : *** ACG**** A**** ATCT* ** CT** TA***** GTAGCTG* ATCTTAAGTACTTTNC****************** A*** TT** CAA***** G****** TCN****** AATAGCCAGTTAC**************
originalCons : NNNTCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTAGTACAAACACAGAGATCCCTTTTAGATATNCATACTAATATTGAAATGTTTGACCGGGGTAGCCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATGATGACTTATTTCTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AAGTT-C-GATATCTATTAAAAA-ACACAGCTCCTT---AAGGATACATATGCT-CAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTATTGT-AACAAAT-AGATCAGATATCTACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTGAATTTTTC-TTTC-ACAGGTACCTAAA-AAATGGG-TGATTTCCTTAAGCGTGATATCTGAAAA-TGGTGGTA-TA-TCAAATGT-GTG---A-TTTTTTTCATT-CAATCTGTAT-T-ATTTT-CAAATG-A--AACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTT-G-CATT-GCAAAG-GTTA----AGGTA---ACT-GGG-AAACTTGTATG-AGCNTGAACTTTAG-AANTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT----AAAT-GAAC--CCGA-TAGA-------TAA-TCACA---CAATC-CAT---GAT-A-AC--T-TTATCATGTTA-ATTGACTA-TGG--GTAA-TTTTAACCTTTA---TATACCT-TTAGTAGCT-GGC-TA-CTA-GT-AGCT-GA----CTTACT-----TA-CTTG-AA--GTA-GCTGGT-T--TACTAGTAACT--GGC--TACTA-A--GTAGCT-AACTTTTTT-CCC-TGTTCA---A--AGTAGCTGGCTA-ACTA------GTAG-CTAA-CTTTTC-T---C-T-TTT-----CT-----AGTAG--C-----CA-GTTTACTAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
finalCons : NNNTCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTAGTACAAACACAGAGATCCCTTTTAGATATNCATACTAATATTGAAATGTTTGACCGGGGTAGCCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATGATGACTTATTTCTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AAGTT-C-GATATCTATTAAAAA-ACACAGCTCCTT---AAGGATACATATGCT-CAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTATTGT-AACAAAT-AGATCAGATATCTACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTGAATTTTTC-TTTC-ACAGGTACCTAAA-AAATGGG-TGATTTCCTTAAGCGTGATATCTGAAAA-TGGTGGTA-TA-TCAAATGT-GTG---A-TTTTTTTCATT-CAATCTGTAT-T-ATTTT-CAAATG-A--AACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTT-G-CATT-GCAAAG-GTTACG----GTA---ACT-GGG-AAACTTGTATG-AGCNTGAACTTTAG-AANTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCTA----AAT-GAAC--CCGA-TAGA-------TAA-TCACA---CAATC-CATCT-GAT-A-AC--T-TTATCATGTTACT--GACTA-TGG--GTAA-TTTTAACCTTTATA-----CCT-TTAGTAGCTG-GC-TA-CTA-GT-AGCT-GA----CTTACTATCTTAAGTACTTTNC------------------TAGTAACT--GGC--TACTAA---GTAGCT-AACTTTTT--CCC-TGTTCCAA-----GTAGCTGGCTA-ACTAG------TAG-CTAA-CTTTTCTCN------TTT-----CTAATAGCCAGTTAC--------------TAGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
Alignments
lowQualScore : 11 2222222 1 1 1 222 1 2222 1 1 1 1 1 111 1 222 11 1 1 1 1 1 1 1 1 1 1 1 1 11111 1 22222 1 111 1 1 11 1 222 1 3333333333333 1 1111 11111 2222222 222 22222 111111 1 1111111 111 44444444444444444 11 11111 999999999999999999999999 11 1111 22222222222222222222 11 1111111 1111111 11111 3333333333333333333333
lowQualScore : 88 0000000 1 5 5 5 000 5 3333 5 5 5 5 7 7 6 7 3 6 666 7 3 6 333 7 44 3 5 7 6 6 7 3 3 7 6 3 3 7 3 7 3 3 7 3 7 3 7 3 0 2 0 44444 0 22222 3 0 0 777 0 0 33 0 6 5 333 5 1 5 5 5555555555555 5 5 1 5 4 5 3 77 1 5 5 1 6 4444 6 77777 6 99 6 3 6 1111111 7 777 66666 111111 5 1 6 6 6 99 6 8888888 6 1 2 666 22222222222222222 55 6 6 77777 22 000000000000000000000000 1 11 99 7777 0 99999999999999999999 66 6666666 5 55 6666666 5 22222 6666666666666666666666 3 4 777 4 66 66 0 5
lowQualScore : .. ....... . . . . ... . .... . . . . . . . . . . ... . . . ... . .. . . . . . . . . . . . . . . . . . . . . . . . . . . ..... . ..... . . . ... . . .. . . . ... . . . . ............. . . . . . . . .. . . . . . .... . ..... . .. . . . ....... . ... ..... ...... . . . . . .. . ....... . . . ... ................. .. . . ..... .. ........................ . .. .. .... . .................... .. ....... . .. ....... . ..... ...................... . . ... . .. .. . .
lowQualScore : 00 5555555 0 5 0 5 000 0 5555 5 5 5 5 3 3 7 3 3 7 777 3 3 7 333 3 00 3 0 3 7 7 3 3 3 3 7 3 3 3 3 3 3 3 3 3 3 3 3 2 0 5 8 88888 0 22222 2 0 2 000 0 0 88 0 7 7 666 7 4 7 7 9999999999999 7 7 4 3 3 7 0 44 0 7 7 4 7 2222 7 77777 7 22 7 5 7 7777777 3 555 99999 777777 7 4 7 7 7 22 7 3333333 7 0 5 888 22222222222222222 88 7 7 88888 88 000000000000000000000000 0 00 22 3333 3 33333333333333333333 33 4444444 0 11 9999999 0 55555 9999999999999999999999 4 4 888 4 99 66 9 0
consensus : NNNTCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTAGTACAAACACAGAGATCCCTTTTAGATATNCATACTAATATTGAAATGTTTGACCGGGGTAGCCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATGATGACTTATTTCTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AAGTT-C-GATATCTATTAAAAA-ACACAGCTCCTT---AAGGATACATATGCT-CAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTATTGT-AACAAAT-AGATCAGATATCTACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTGAATTTTTC-TTTC-ACAGGTACCTAAA-AAATGGG-TGATTTCCTTAAGCGTGATATCTGAAAAT-GGTGGTA-TAT-CAAATGT-GTG---A-TTTTTTTCATT-CAATCTGTAT-T-ATTTT-CAAATG-AA--ACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTTG-CATT-GCAAAG-GTTAC----GGTA----ACT-GGG-AAACTTGTATG-AGCNTGAACTTTAG-AANTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT----AAAT-GAAC--CCGA-TAGAT-A-------ATCACA---CAATC-CAT-CTGATA-A--C-T-TT-ATCATGTT-AC-TGACTA-TGG--GTAA-TTTTAACCTTT-A-----TA-CCTTTAGTA--GCT----------GGC-TA-CTA--GT-AGCT-GA----CTTACTATCT------TG-AAGT--A--CT-G--TTACTAGTAACT--GGC--TACTA-A--GTAGCTAACTTTTT--CCC-T-GTT-----N--CAAGTAGCTGGCTA-ACTA------GTAG-CTAA-CTTTTC-T---CNT-TT-----CT-----AA-TAGC-----CAG--TTACT-AGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
Reference ( family-1900 ) : NNNTCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTAGTACAAACACAGAGATCCCTTTTAGATATNCATACTAATATTGAAATGTTTGACCGGGGTAGCCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATGATGACTTATTTCTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AAGTT-C-GATATCTATTAAAAA-ACACAGCTCCTT---AAGGATACATATGCT-CAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTATTGT-AACAAAT-AGATCAGATATCTACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTGAATTTTTC-TTTC-ACAGGTACCTAAA-AAATGGG-TGATTTCCTTAAGCGTGATATCTGAAAAT-GGTGGTA-TAT-CAAATGT-GTG---A-TTTTTTTCATT-CAATCTGTAT-T-ATTTT-CAAATG-AA--ACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTTG-CATT-GCAAAG-GTTAC----GGTA----ACT-GGG-AAACTTGTATG-AGCNTGAACTTTAG-AANTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT----AAAT-GAAC--CCGA-TAGAT-A-------ATCACA---CAATC-CAT-CTGATA-A--C-T-TT-ATCATGTT-AC-TGACTA-TGG--GTAA-TTTTAACCTTT-A-----TA-CCTTTAGTA--GCT----------GGC-TA-CTA--GT-AGCT-GA----CTTACTATCT------T--AAGT--A--CT----TTNCTAGTAACT--GGC--TACTA-A--GTAGCTAACTTTTT--CCC-T-GTT-----C--CAAGTAGCTGGCTA-ACTA------GTAG-CTAA-CTTTTC-T---CNT-TT-----CT-----AA-TAGC-----CAG--TTACT-AGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
gi|1 : TCAGCTATATATCAGAAACCACAGGTCCTTAAGGTATCCCCAAACATGAATTGACGGTAGACACTAGACAAAAGTTTAGTAGCTTGATTTTATTAAAGGTGATATCTGGAATATCCATGTTATATTCTGAAACCCAATATACACTCTTCGACTACTTGTATTTAACAGAAAAATACTTTTTATTAGAAACACACAGTTCCTTAAAGTATCCCACAAATATTGAAATTTCGGTATCATCCAAACAAAAGATAAGTAGCAGATTTTTTAAGCGTGATATCATGAAGATATGATGAAAGTTTCCGACACCTATTAATCGAACTCCTAATTGTTTGTATAGTAATGTTCATAATCTACGTA--ACAAACACAGAGAT---TTTTAGATATCCATAC-AATATT-AAATG-TTGATCGGGGTAGCCACTAATCTAATAATATACTAGTAGCTAATTTCATTAAGTGTGAATATCTGAAAAATG-TGACTTATTTCTGAGACACACAATATCACATCC-ATTGTATGT-TA-TC-TAGATAAAGTTCC-GATATCTATT-AAAA-ACACAGCT-CTT---AAGAATACATATGCTGTAGTATCGATCGGGATAATTCTGATACTTGATATCACTTCTCGACACCTGTA-TGTCACCAAATCAGATCAGATATCTA-CA-TA-ACCTCTGAGTTCGTTACG-TTT-CAGTTGAATTTTCA-TTTCAACAGGTACGTAAA-A---GGG-TGATTTCCTTAAGCGTGATATCTGAAAAT-GGTGGTATTAT-CAAATGTGGTGGGAG-TGTCTTTCATTACAATCTGTAT-T-ATTTTACAAATGCAA--ACAGTTGAGGTGGAAAG-TTGTGAGTTCGTA-TTTTG-CATT-GC--AG-GTTAA----CGTA----A-T-GGG-AAGTTTGTATG-AGCTTGAACTTTAG-AATTGCA-AAG-C-TGTG-ACTTTTGG----CGA-TCT-----AAT-G-AT--CCGA-T-GAT-A-------CTCACA---CAATT-CAT-A-GATA-A--T-T-TT-A-CATGTT-ACTTGACTA-TGG--GTAA--TTTAACCTTTAA-----TA-CCTTTAGTA---CT----------GGCGTAGCTA--GT-AGCT-GA----CTTATTTACT------TG-AAGT--AG-CTGGTATTACTAGTAACT--GGC--TACTA-AAGGTAGCTAACTTTTTTACCCGT-GTT-----CAACCGGTAGCTGGCTA-ACTA-------TAG-CCAA-CTTTTC-T---CGTGTT-----CT-----AG-CAGTACGGGCAGGTTTACT-AGTAG---C-TGGT--TACTAGTAGCTAAC-TTGACC-GATC
gi|10 : aggGC--TACTGCA--GTAGCTAACGTTCT--CA----GCT-----T--CAAGTAACTGGTTA--CTC------ATAG-CTAA-CTTTTCTT---TCT-TT-----CT----------------------TTTTTGAGTAG---C-TAGT--TACCAATACCTAAC-ATAGCC-AATC
gi|11 : T-CTGATA-A--CCT-TT-ATCATGCG-AA-TGACTA-TGT--GTAA-TTTTAACCTTT-AAGATATA-CCTTTAGTA--GCT----------GGC-TA-CTA--GT-AGCT-G
gi|11 : aatT-AGTAG---C-TGGC--TACTAGTAGCTGNN-NNNATT-GAnnnnnattgacgtcattaaaata
gi|12 : aattctgataacctttatcatgcgaatgactatgtgtaattttaacctttaagatatacctt-GTT-----A--CTAGTAATTGGC-A-ACTATTACATGTAG-CTAC-CTTTTC-TGGTCTT-TT-----CT--------TGGTT----CAA--GTACT-AGTAGGTGCATGGC--TACTAGTAGCCAAC-TTTACC-AATCcgtcattaaaata
gi|13 : --GGT--TACTA----GTAGCTAACATTTT--C---T-GTT-----A--CAAGTAGCTGGCCA--CTA------GTA--CTA---TTTTT-T---CCT-TT-----CT--------TTGC----------TTA---AGTAG---C-CAGT--TACTAGTATCTAAG-TTTGCC-GA
gi|14 : -T---TTCGTA-TTTTG-CATT-ACAAAG-GTTAC----GGTAGGTAACTGGGG-AAACTT-TATG-AGCGTGAACTTTAT-AAATGCA-AAG-C-
gi|15 : GTA-GTATAGGCATAGAT-AAGTT-C-GATATCTATTAAAAC-AAACAGCTCCTTTTAAAAGATACATA-GCT-CAGTATCG
gi|16 : -----AG-TAAC-----CAG--TTCCT-AGTAG---C-TGGT--TACTAGTAGCTAAC-TTTACC-GATC
gi|17 : tccacccaGTAGCTGGCTA--CTA------ATAG-CCAA-CTTTTC-------T-TT-----CT-----AAGTAGC-----CAG--ATATT-AGTAG---C-t
gi|2 : ATTCTGATACTTGATACCACTT-TCGACAC-TGTATTGT-AACAAAT-AGATCAG-TATCTACCAATAGACCTCTGAGTTCGTTACGTTTTGCCGTTGAATTTTTC-TTTC-ACAGGTACCTAAATAAATGGGGTGATTTCCTTAAGCGTGATATCTGAAAATTGGTGGTA-TATTCAAATGT-GTG---A-TTTTTT-CATT-CAATCTGTATATGATTTT-CAAATG-AATAAAA-TTGGGG-GGAAAG-TT-TAA-TTCGTA-TTTTGGCATT-GCAAAG-GTTA------GTA----ACT-AGA-A---TTGTATG-AGCTTTGACTTTAG-AATTGCA-AAG-T-CGTG-ATTTTTGG----C-A-TCT----AAAT-GAAC--CCGAGTAGAT-ACTTTGTAATCACAGATCAATC-C----TGATG-AACC-T-TTCATCATGTT-AT-TGACTA-TAG--GTAA-TTTTAACCTTT-A-----TATCCTTTAGTA--GCTG---------GGC-TATCTAT-GT-AGCTCGA----TTTTCTAACT------TGAAAGT--A--CCTGG-TTACTAGTAACT--GGC--T-CGATA--GTAGCTAACTTTTC--CCC-T-GTT-----C--AATGT-GCTGGCT--ACTA------GTAGCCTAAGCTTTTCGT---CGC-TTAAGTGCC-----AA-TAGC-----CAG--TTACT--GTAG---C-TGGT--TACTAGTAGC-AAC--TTACCGGATC
gi|3 : TAGTACAAACACAGAGATCCCTT--AGATATATATACTAATATTGAAATGTTTGAC---GGTA-CCGCTAATCTAATAATGTACTAGTAGCTAATTTCATTA----TGA-TATCTGAAAAATGATGATTTATT-CTGAGACACGCAATACCACATCCTGTTGTATGTATAGTCATAGAT-AA-TT-CAGATATGTATTAAAAACACACAGCTCCTT---AAGG-TAGATAT-CT-CAATATCGAT-GGGATA-TTCTGATACTTGATATCACTTCTCGACACCTGTATAGT-AACAAAT-ATATCAGATATATACCA-TA-ACCTCTGAGTTCGTTACGTTTT-CAGTTG-ATTTTTCATTTC-ACAGGTACCT--A-AAATGGG-TGGTT-------------TATC---AAAT-G-----------------T-ATG---ATTTTTTTTCATT-CAATCTATAT-T-TTTTT-CAAGTG-AA--ACA-TTGAGGTGGAAAG-TT-T---TTCGTA-TTTTGCCATT-GCAAAGTGTTAC-----GT-----ACT-GG----ATTTGTATG-AGCTTGAACTTTAG-AATTGCAGAAGCC-TGTG-ACTTT--G----CGA-CCT----AAAT-GAAC--CCGA-TAGAT-A-------ATCAAAT--CAATC-----CTGATATA--C-T-TT-ATCATGTt
gi|4 : cGGTGGAAAG-CT-T---TTCGTAGTTTTG-CATTTACAAAG-GTTAC----GGTAGTA-ACT-GGGGAAACTT-TATGGAGCGTGAACTTTAATAAATGCA-AGG-CCTGTGGACTTTTG-----CGAATCT----AATT-GAAA--CCAA-TATAT-A-------ATT-CA---TA-TT-CATACTGCTA-A--CGT-TT-ATCATGTT-AC-TAACTAATGG--GTAA-TTCTAACCTTT-A-----TA-CGTTTAGTA--GCT----------AGC-TA-CTA--AT-AGCT-GA----CTTACTTTCT-------------------T----TTA--AATAGCT--GGC--TACTA-A--GTAGCTAAACTTTT--CCC-T-GTT--------CAAGTAGCTGGCTGTGCTA------GTAG-CCAA-CTTTTT-T---CAT-TT-----
gi|5 : tgTG-AACTTTGGAGACTGA-TCTTAAGAAATTGAACACCCGA-TATATAA-------ATC-CA---CAATCACATCCTGATA-C--C-TATT-ATCATGTTAAC-TGA-TA-TGGAAATAATTTTTAAGATAT-A-----TA-CACCTA-TAC-ACT-----------------TTA--GTCAGCT-GAGACTCTTACTATCTCTATTGT--AAGT--ACGCTCG--TCTCTAGTAATTAAGGTCGTACTT-A--GTAGCTAACTTCT----CT-TAGTTTTAAGT--TAAGTAGCTGGCTA-TCTA------ATnnnnnnnnnnnnnnnnnnnnnnnnnttg
gi|6 : cgtgaTATCTGAAATT-GGTGGCA-TAC-CAAATGT-GTG---A-ATTTCTTCATT-CAATCTTTAT-G-ATTTT-CTAATG-AA--ACA-CTGAGGTGGAAAGCTT-T---TTAATA-TTTTA-CATT-ACAAAG-GTTACGGTAGGTA----ACT-GGG-AAAC-TGTATG-AGCGTGAACTTTAT-AAATGCA-AAG-C-gatatgcttt
gi|7 : AATC-C---TTGATA-A--C-T-TTTATCATGTT-AC-AAACTG-TCG--GTAA-TGTTAACCGTT-C-----TA-CTATTACTACTGCTAAACTTTTTCAGC-TT-CAAACGT-AGCT-G-----CTTGCTATAG------T--AAATCAA--CG----TTTCT
gi|8 : ttatattcgTGGAAAG-TT-TA--TTCGTA-TTTTA-CATT-GCAA---------------------CT-GGG-AAA-TTGTATG-A------ACTTTAA-AAACTCA-AAG-CCTGTT-ATTTTTGG----CGA-TCT----TGAT-GAAC--CCGA-TTGAT-A-------ATCACAAT-CAATC-C
gi|9 : -A--GTAACTAACTTTCT--C-----GGT-----T--CAGGTAGCTGGCTA-AA-A------TTAG-CTAA-CATTTT-T---ATT-TT-----CTTTCTGAA-TAGC-----CAG--TCAGT-AGTAG---C-TGGTTATACAAGTAGCTAACATTT--C-GATC