lowQualScore : 111111111111111111111111111111
lowQualScore : 222222 11111 66666666666666666666666666666666666 111111 3333333333333333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 333333 99999999999999999999999999999999999999999999999 111 44444444444 1 1111111 22222 111111 222222222222222222222222222 111 11 1 3 33 11 444444444444444444444444444444 3 111 1111 44444444 1 11111 3333 1 1 111 1 2222222222222222222222222222222 4 2222 5555555555555 1 1111 44 2222 1111111111111 1 222222222 2222222222 22222 1 111111 1111 11 1 11111 1 555555555555 3 77777777777777 777777777777777777777777777777 22 222222 11111 222222222 333 1 111 111 11 1111 11111 11 3333333 1 1
lowQualScore : 999999 99999 1 11111111111111111111111111111111111 999999 66 3333333333333333 66 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 3 3 4 3 555 3 6666 2 444444 3 3 44 66666666666666666666666666666666666666666666666 333 555 3 888888 2 33 44444444444 2 2 1 33 6666666 22222 3 3 77777 3 2 666666 222222222222222222222222222 3 2 777 33 0 0 88 77 22 222222222222222222222222222222 0 333 2222 3 22222222 0 77777 8888 7 7 0 0 777 9 6 6 5 99 6 77 5555555555555555555555555555555 0 0 0 8 88 6666 7777777777777 0 4444 2 00 2 2 0000 6 4444444444444 5 7 111111111 6666666666 2 8 3 88 0 00000 5 0 999999 3 6666 8 0 6 33 6 5 1 5 22222 77 5 6 6 8 000000000000 0 0 1 2 99999999999999 8 6 99 6 555555555555555555555555555555 00 5 5 666666 5 33333 222222222 000 77 1 000 5 000 99 3 66 0000 77 3 66 4 11111 66 2 66 00 66 66 6 0 6 4 4 6666666 666 0 6
lowQualScore : ...... ..... . ................................... ...... .. ................ .. ................................................................................................. . . . . . ... . .... . ...... . . .. ............................................... ... ... . ...... . .. ........... . . . .. ....... ..... . . ..... . . ...... ........................... . . ... .. . . .. .. .. .............................. . ... .... . ........ . ..... .... . . . . ... . . . . .. . .. ............................... . . . . .. .... ............. . .... . .. . . .... . ............. . . ......... .......... . . . .. . ..... . . ...... . .... . . . .. . . . . ..... .. . . . . ............ . . . . .............. . . .. . .............................. .. . . ...... . ..... ......... ... .. . ... . ... .. . .. .... .. . .. . ..... .. . .. .. .. .. . . . . . ....... ... . .
lowQualScore : 777777 77777 0 66666666666666666666666666666666666 444444 99 1111111111111111 99 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1 1 8 3 888 1 5555 9 555555 1 1 66 44444444444444444444444444444444444444444444444 888 444 1 888888 9 99 88888888888 9 9 4 99 3333333 22222 1 7 77777 1 5 999999 777777777777777777777777777 3 5 000 88 0 0 00 55 55 000000000000000000000000000000 0 888 2222 2 00000000 0 55555 5555 0 0 0 0 555 2 7 7 2 22 7 77 5555555555555555555555555555555 8 0 8 0 88 0000 2222222222222 0 8888 2 22 0 5 6666 7 1111111111111 7 1 000000000 8888888888 2 0 8 88 8 00000 0 8 444444 2 0000 0 8 7 33 7 7 4 7 77777 99 7 7 7 0 000000000000 8 0 2 5 00000000000000 0 7 22 7 000000000000000000000000000000 22 7 7 666666 7 66666 999999999 999 99 4 000 7 000 11 2 99 6666 00 2 88 4 11111 22 4 33 66 11 11 1 8 7 4 4 7777777 222 0 0
consensus : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA----CA-T--T-GA--C----CTA-CT--G-----TTTT------GA--AGGG----------------GGG--GGGG---------------CA-----AGC--A-----A---A--------AA-------AA-AA---AC-AT--------------N------GACCAC--TGT-T-C-TGTAACTA-CT---A-GA----CTAGT-AAT-G--CATTATAGCTT-G-AAAAA--TACTT-------------N--------------GAT----------------AAA---A---TAGTTT------TGCCC-CCCC--CCCCCCCC--CCG-C-AC-T-TT-AAAAGTG--GG--G-C-GGGG-A---TACCC-----C-CCCACC---CCCGG--TCC----------T--A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAATG-AGG-TTTTCTTACTAAGAACA-T-CGG-C--TACTG--AGCATGATGTATAATGATCAATTTCTCATGCAATGTAGATAN------CTTGTCA-GT-T-TAATCCGA-CATTTTC-AT-C---ACACCCTTC-C-AAATATGTC--ATG-TACC-GGGGTCT------TG----CA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTT-GAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTA-GT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---T--AA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATGTG-TGAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CA-G-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATC----------C-TACAAATATAAACAGTTTAGGCAG--AA-TA----ATTATAT-CCTTATCAGA-TATAA--TAGCCAT-AGATA--CAACGTA--------------------ACTTTG-GAAAA-T-GCTG-AGC-TCC-AACC----TTT---------TGATTGGG--CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGA-TTAAAAAAAATCN-A-GCTCGTTTGAGTGTTT-----ATT-ACCATAACAG-AA--TTCTACT--G--AAATATATTAACCATGA-TTG-AC------GCGCG--GG-CGCGCCGAATACAACTAG
Reference ( gi|2 ) : CTAATAAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCAA---CA-T--T-AA--C----CTA-CT--G-----TTTT------GA--AGGG----------------GGG--GGGG---------------CA-----AGC--A-----A---A--------AA-------AA-AA---AC-AT--------------T------GACCACA-TGT-T-C-TGTAATTA-CT---A-GA----CTAGT-ACG-G--CATTATAGCTT-G-AAAAA--TACTT-------------A--------------GAT----------------AAA---A---TAGTTT------TGCCC-CCCC--CCCCCCCC--CCGTC-AC-T-TT-AAAAGTG--GG--G-C-GGGG-A---TACTC-----C-CTCACC---CCCGG--TTC----------T--A--------CGCCCAT-GCGTGTT--AATCAA--TA-AG-CGGAGAT--AGG-TTTTCTTACTAAGAACATTGCGGTC--TACTG--AGCATGATGTATAATG-TCAATTTCTCAAGCAATGTAGATAT------CTTGTCA-GT-T-TAATC--A-CATTTTC-AT-C---ACACTCTTC-C-AAATATGTC--ATG-TACC-GGGGTCT------TG----CA-------CGTT------TTGATTTACTATCGAGATTTAGA-GCA-ATTA-T--GAAAGAGCGGGGA-GGGGGGGGGGGGGGGGGGTA-GT-T--GATTTCGGTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---T--AA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATG-TGAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CA-G-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATC----------C-TATAAA-ATAAACAGTTTAGGCAG--AA-TACTTTATTATAT-CCTTATCAGA-TATAA--TAGCCAT-AGAT---CAGCGTA--------------------ACTTTG-GAAAA-T-GCTG-TGC-TCC-AACC----TTT---------TGATTGGGC-CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGA-TTAAAAAAAATCT-A-GCTCGTTTGAGTGTTT-----ATT-ACCATAACAG-AA--TTCTACT--G--AAATATATTAACCATGA-TTG-A-------GCGCG--GG-CGCGCCGAATACAA-TAG
gi|5 : AAATCAA-TGTGGCAAGCAGAA-CAA-AAAAGGCA----CACT--T-GA--A----CTA-CTCTG-----TTTTTGGACGGG--GGGG----------------GGG--GGGG---------------CA-----GGC--AAAAAGA---A--------AA-------AA-AG---AC-AT--------------A------GA-CAC--TGT-T-C-TGTAA-CA-CT---A-GA----CTAGTAATT-G--CA-TATAGCTT-GAAAAAA--TACTT-------------T--------------GAT----------------AAA---A---TAG-TT------TGCCC-CCCC--CCCTTCCT-----TC-AC-TCTT-AAAAGTG--GG--G-C-AGGG-G---TGCCC-----G-C---CC---CCCGGCTTCC----------T--A--------CGCCCA--GC-TGTT---ATCAA--TACAGACGGGAATGCAGG-TTTTCGT--TAAG-ACA-TGTGGTCTATACTGACAG-ATGATGTATAATGATCAAATTCTCATG---TGTAGATACCATGTACTTGTCA-GTCT-TAATCCGA-CACTTCC-AT-CTCAGCACCTTGC-CAAAATATGTCATATG-TACCAGGGGTCTGTGCTGTA----CA-------CG-T------TTGATTTACTAT-GGGATTTAGAGGCA-ATTATT--GAAAGA------------GAAGGGGGGGGGGGTA-GT-TTGAACTTC-ATGTGCATGTAGGCCTA
gi|9 : AAT-AT-G-TAACAAGCAAAA-GGT-AAAAAAAAAATCCA-T--A-AAAACAGTGCTG--T--G-----TTTT------GA--GGGG----------------GGG--GGGGGACTTCCAAATGTGATA-----AGC--A-----G---AGGGGC---AC-------AT-AG---AC-AC--------------T------GTTCAC--TGT-T-C-TGTAACTA-CT---A-GACTGGCTAGT-AAT-T--CGTTATAGCTT-G-AAAAA--aagtaaatatatatattattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaacgttgggcgctaatatgcatattaaagggacccacctgggggaaggattggttgaaattggtatggatccccctgttgaagtaaataataattcatgttcatgaaaa
gi|3 : aagacacatagacactgctccgttttgAT-AAGT-TGGCAAGCAAAA-GAC-AAAAG-CAA---CA-T--TGAA--C----CTA-CT--G-----TTTT------GA--AGGG----------------GGG--GGGG---------------CA-----AGC--A-----A---A--------AA-------AA-AA---AC-AT--------------T------GATCAC--TGT-TTC-TGTAATTA-CT---A-GA----CTAGT-ACG-G--CATTATAGCTT-G-AAAAAAATACTT----------------------------GAT----------------AAA---A---TAGTTT------TGCCC-CCCC--CCCCCCCCACCCGTC-AC-T-TT-AAAAGTG--GG--G-C-GGGG-A---TACTC-----C-CTCACC---CCCGGA-TTC----------T--A--------CGCCCAT-GCGTGTT--AATCAA--TA-AG-CCGGGAT--AG--TTTTCTTACTAAGAACATT-CGG-C--TACTG--AGCATGATGTATAATG-TCAATTTCTCAAGCAATGTAGATAT------CTTGTCAAGT-TGTAATC--ATCATTTTCTAT-C---ACACTCTTCGC-AAATATGTC--ATG-TACC-GGGGTCT------TG----CA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTA-T--GAAAGAGCGGGGAGGGGGGGGGGGGGGGGGGGTA-GTAT--GATTTC-GTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---T--AA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGTTGAACTT-GGTA-----CCCGACTTGG--TA--TAGATCCC-T-ATTCATTTG-TCAT-G-AAAGTGG-AG-ACCA-G-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATC----------C-TATAAATATAAACAGTTTAGGCAG--AATTAC-TTATTATAT-CCTTATCAGA-TATAA--TAGCCAT-AGATA--CAGCGTA--------------------ACTTT--GAAAA-T-GCTG-----TCC-AACC-----TT---------TGATTGGG--CTCGATATT--CGAATAAG-CTATTT---CGGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----T-A-GTATAAAAAATCT-A-GCTCGTTTGAGTGTTT-----ATT-ACCATAACAG-AA--TTCTACT--G--AAATATATTAA-CATGA-TTG-AC------GCGC---GG-CGCGCCGAATACAA-aaaattattcgtgtaaaaacatcttaatcat
gi|30 : GACACGCAAAA------AAGGGCA----CA-T----AG--T----C-A-CT--GATTTATTTT------GAAGAGGG----------------GGG--GGGG---------------CA-----TTCTTA-----A---G--------AA-------AA-GGC--AC-AC--------------A------GA-CAC--TGT-T-C-TGTAAct
gi|15 : aatgtgacaaCACGCAAAA-AATTAAAAGGCA----CA-TAGT-CA--C----TGATCT--G-----TTTT------GA--AAGA----------------GGG--GG-----------------CATTCTTAAA--A-----A---A--------AATAAGGAGAA-AAGGCAC-AG--------------A------GAC-AC--CGT-T-C-TGTAACTA-CT---A-GA----CTAGT-A
gi|1 : catgcaggataggcataggactgggacaaacttctaaacaatgtgaaaaaaAAGCAAAACGAC-AAAAAGCA----CA-T--T-GAGTCGA--CT--CT--G-----TTTTT-----GA--AGGGGAGGAGGGGGGGGGGAGGG--GGGG---------------CA-----AGC--A-----A---AAAAAATTTAA-------AA-AA---ACTAT--------------G------GA-CAT--TGT-T-CTTGTAATTACCT---A-GA----CTAG--ACATG--CATTATAGCTT-G-AAAAA--TAATT----------------------------GAT----------------AAA---A---TA-TTC------TGCCC-CCCC--CCCCTCCA--C------T-T-TT-AAAAGTG--GG--G-CGGGGG-A---TACCC-----CACTCA-C---CCGGG--CTCCTTATTACCGT--A--------CGCCCATGGCGTGTTAAAATCAAGTTA-AGACGGGAATTGAGGTTTTTCTTTC-AAGA----------------------CATGATGTATAATGATCAA--TCTCATGC-ATGTAATTA--------CTGGCA-GT-T-T-ATCCGA-CA-TTTC-ATCC---ACAC-CTTC-C-AAATCTGTC--ATGTTACC---GGTCT------TG----CA-------TGTTACACGATTGA-TTACTAT-GAGATTTAGA-GCACATTA-TTGAAAAGACC----------GGGGGGGGGGTGGTTAGGT-T--GACTTC--TGTGCATGTAGGCCTA----A-AGTAATATACTTTT--AA-TAATGCATA-----T---attcatt
gi|24 : -T--T-GA--C----CTA-CTCTG-----TTTT------GA--AGGG----------------GGGTGGGGG---------------CA-----AGC--A-----A---A--------AA-------AA-AA---CC-ATAATACAAACAAACAT------GGACAC--TGT-T-C-ATTAATTA-CT---G-GA----CTAGT-AAT-G--CATTATAGCttaatttaatgaagtgatatgaaattattttgtaaacacaaaaatggcgcgttaattatgcataagttttaagaattgggaagggatgtatgaactttggtacccactgtatatagatccctagcatttggtcattgaaatggaggacaggctgatgtatattcgccactttaaaacttttgatttatccatataaatataaacagttcaggcaaaaatcatagccttatcaaaatataatagccattagatacaacttaacttttgaaaatgctgagcctcaccttttgattgggttctcgatattcgaataaggctatttgttccgttaaagaaagaacgaaataaagttataaatgattaaaaaaaatcttagctcgtttgactgtttatttaccataacagaattctacttgaaaatatattaacctgaattgaccgcgcggcgcgccggtcgcgccgaatacaact
gi|5 : ------GA--AGGG----------------GGG--GGGG---------------CA-----AAC--T-----ATTTT--------AT-------CA-AA---GT-AT--------------TTTTTCAAGCTATA---------TGCAATTA-CT---A-GT----CTAGT---------GTTACA-----G-AACAG--TGTCT-------------A--------------TGT----------------------C---TTTTTTTCTTTTTGCCTGCCCC--CCCCCCCC--CCGTC-
gi|16 : aaatcaatgtggcaagcagaacaaaaaaggcacacttgaactactctgtttttgA-----ATC--A-----A---A--------AT-------AATAA---GC-GT--------------A------AAAAACACTGT-T-C-TGTAACTA-CT---T-CA----CTAGT-AAT-T--CATTATAGCTT-G-AAAAA--TACTTGACAATAGGAGGGG--------------GAC----------------AAAAACA---TAGTTT------TGCCT-CCTC--C-------------T-AC-T-TTCAAAGGTG--G-------GGGG-AT--TATCC-----C-CCCA-----CCCGG--CTC----------CA-A--------CGCCCAT-Gcttcactcttaaaagtggggcaggggtgcccgccccccggcttcctacgcccagctgttatcaatacagacgggaatgcaggttttcgttaagacatgtggtctatactgacagatgatgtataatgatcaaattctcatgtgtagataccatgtacttgtcagtcttaatccgacacttccatctcagcaccttgccaaaatatgtcatatgtaccaggggtctgtgctgtacacgtttgatttactatgggatttagaggcaattattgaaagagaagggggggggggtagtttgaacttcatgtgcatgtaggcctaaagtaaatatatatattattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaacgttgggcgctaatatgcatattaaagggacccacctgggggaaggattggttgaaattggtatggatccccctgttgaagtaaataataattcatgttcatgaaaa
gi|17 : ctgtaC--A-----A---A--------AA-------TA-AA---G-------------------------GACAAAC-TGTGT-C-TGTAAATA-CT---AAGA----CTGAT-AAT-T--CATTACAGCTT-T-AAAA---TACTT----------------------------GAC----------------AAA---A---
gi|7 : aaaatgtgtataA-------AA-AA---A--------------------------ACCAC--TGT-T-C-TGTAACTA-CTTTCA-GG----CTAGT-AAT-GTTCATTATAGCTTTG-AAA----TACTT-------------GACAATAAGGAGGCGGAC----------------AAA---AACATAGTTT------TGCCC-CTTT--CCTCC---------T-AC-T-TTCAAAGGTG--G-------GGGG-AT--TATCC-----C-CCCA-----CCCGG--CTC----------CCAA--------CGCCCAT-Ggataggggggggggcataacatcctttcatgttttgcccctcccttttcaagtgggggcaaatcccatgcccacg
gi|22 : catatatagactgatttttaatgaggagggagcacacttctaaatgtggcaaagcaaccaaaaaaagggggggcacatgtagagcactttggttgtgtgtgtgttgtgtggtgtgcgtgtaaactgtaatcaaaatatagcgtCAC--TGT-T-C-TGTAACTA-CG---A-GA----CAAGT-AAT-T--CATTATAGCTT-G-
gi|8 : cttaga-TAT-T-T-TGTAACTA-CT---A-GA----ATAGT-AAT-T--CATTATAGCTC-G-AAGAA--TACTTGAAAGAAGTGG--A--------------GGTTGGGG-----------AAAAACA---TAA-TT------TGCTC-CCCC--TCC-----------C-AC-T-TTCAAAAGTG--GG--A-G-GGGC-AAT-TGCCA-----C-CATGCC---CCCGG--CTC----------gcacttttttataataagggggggggaggggggcatagttacctggctccagtgtacgcccatg
gi|14 : caagacactgatctcatttgaatgcgggggagtgggttctaaatgtgacaaacaaaacataggataaaagcacatatagaccttctg-GA----TTAGT-ATT----CATTATAGCTT-G-AAAAA--TACTT-------------T--------------GAC----------------AAccaaatcca
gi|4 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtTAGT-AAT-G--CATTATAGCTT-G-AAAAA--TAATT-------------C---------------AT----------------AAA---A---TATTTC------TGCCC-CCCC--CCTCCACT-----------T-TT-ACAAGTG--GG--GGC-GGGGGA---TACCC-----C-CTCACC---CCGGC--TCC----------T--ATACCGTGACGCCCAT-GCGTGTT--AATCAG--TA-AGACGGGAATG-AGG-TTTTCTTA------ACA-------------------CGTGACGTATAATGATCAATC-CTCATGCAATGT-GATAG------TTTGTCA-GT-T-T--TCG-A-CATTT-C-AT-C---ACAC-CTTC-C-AAATCT-TC--ATG-TACC-GGG-TCT------TG----CAATGTACACGTT------TTGATTTACTAT-GAGATT-AGA-GCA--TTA-TT-GAAAG--CGGGG---------GGGTGGGGGTGTA-GT-T--GACTTC-GTGTGCATGTA-GCCTA----A-AGTAG-----------AA-TAATGCATA-----T---taagggggggggaggggggggggggggggggggcatagttttgcccccattttcaaaagtgggggagagggtgaattgcccacacacccttcccc
gi|28 : --CATTATAGCTT-G-AAAAA--TACTT-------------GAC------------GATTGGTGGGGGAAGGCAGAAAC--A---TAATGT------TGCTC-CCCC--CCCCCttaatttaataatgatatgaattatttgtaaccacataatggcgctaaatatgcatattaagacattgggaaggaggatgttgactgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctg
gi|44 : gcaatt----------------AAG---A---TAGTTT------TGCCC-CTCC--CCCtgataaatgaaattgccaccccggttc
gi|25 : ggggggggggggcaaaA---A---TAGTTT------TGCCC-CCCCCTCCCCCCCC--CCG---AC-T-TT-CAAGGGG--GG--actttcaaaag
gi|27 : gaagttgtaactgaaaaatactttacatacaacaggggtaggaggggggtggggtggcaaaatA---A---TACTTT------TGCCA-CCCC--CCCCCCGC---------T-T-TT-AAAAGAG--G-------GGGG-T---TACCC-----C-CCC-CCTTTTCCGGGCTCC----------T--A--------CGTCCAT-G
gi|37 : gttacttgaccaaaaaaaaggggggggtT------TGCCC-CCCC--CCCCTT-------TC-A-------AAAAGGGGTGG--G-T-GGGT-AAT-TGCCCCCGTGC-CCCACC---CCCGGC-TCC----------T--A--------CGCCCAT-G
gi|39 : -CCCC--CCCCACAC--ACA-C-AC-T-TT-GGAAAGG--GG--G-G-GGGG-------CCC-----C-ATCTCC---CTCGGC-TCC----------T--A--------CGCCCAT-Ga
gi|42 : CCCCCCC--CC-----T-T-TT-GAAAGTG--GG--G-----GG-G---CGCCC-----C-CCC-TC---CCTGC--TCC----------T--A--------CGCCCAT-Gat
gi|26 : CCCCT--CCG-A-ACGT-TC-AAAGGTG--GG--T-G-GGGG-A---G--TC-----C-CTC-------CCGC--TCC----------C--A--------CGCCCAT-Gtt
gi|40 : tgtaactggaaaaatactttaacaatacagtgggagggcgcaaatcaaagCC--CCGTCCAC-T-TTCAAAAGTG--GGGAG-C-GGGA-AATTTCCCC-----C-CTC-CC---CCGGG--TCC----------T--A--------CTCTCAT-G
gi|19 : TTC-C-AAGTATAAT--AAG-TACC-AGGGTCT------TA----TA-------C
gi|33 : tcaatgcatgatttagatccattctcattgcatgtatataatgaagatactgaccagtttagcaaaag-C-AAATATCTC--ATG-TACC-GGGGTCT------TGCATACA-------CGTC------TTGATTTACTAT-GGGCTTTAGA-GCA-ATTATT--GAATGAGGGGGGG-GGGGGGGGtgacagttatgttgaaggagctagtaaaggggatgggagctctgg
gi|4 : ACCACATAAT--GGCGC---T--AAAT-ATGCATA-----TT--AAGA---CATT---GGGAAGGAGGATG-TTGACT---GTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGGAAG-A-CA-G-C---TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATC----------C-TACGAATATAAACAGTTTAGGCA---AA-TA------TATATAGCTTACCAGA-TATAA--TAGCCAT-AGTA---CAACGTA--------------------ACTTT--GAAAA-TAGCTG--AC--CC-AACC----TTT---------TGATTGGG---TCGATATT--CGAATAAGCCTATTT---CCGT-AAGAAAAACAA---GCGAT--AAAGCTA--AA----TGA--TGAAAAAAATCT-A--CTCGTTTGAGTGTTT-----A-T-ACCATA--AG-AA--TTC-ACT--G--AAATATATTAACCATGA-TTG-AC------GCGCG--GGCCGCGTC
gi|1 : tagtaatgcattatagcttgaaaaataattcataaaatatttctgccccccccctccacttttacaagtgggggcgggggataccccctcaccccggctcctataccgtgacgcccatgcgtgttaatcagtaagacgggaatgaggttttcttaacacgtgacgtataatgatcaatcctcatgcaatgtgatagtttgtcagttttcgacatttcatcacaccttccaaatcttcatgtaccgggtcttgcaatgtacacgttttgatttactatgagattagagcattattgaaagcgggggggtgggggtgtagttgacttcgtgtgcatgtagcctaaagtagaataatgcatatttaatttaataatgatatgaattatttgtaCAAA-AATGGCGCGT---T--AA-TTATGCATAAGTTTT---AAGAATT-------GGGAAGGGATGTA-TGAACTTTGGTA-----CCC-ACT--GTATA--TAGAT-CCCT-AG-CATTTGGTCATTGAAA--TGG-AGGA-CA-GGCTGATGTATAT--TCGCCACTTTAAA-ACTTTTGATTTATC----------CATATAAATATAAACAGTTCAGGCAA--AA-------ATCATAG-CCTTATCAAAATATAA--TAGCCATTAGATA--CAACTTA--------------------ACTTTT-GAAAA-T-GCTG-AGC-CTC-A-CC----TTT---------TGATTGGGTTCTCGATATT--CGAATAAGGCTATTTGTTCCGTTAAAGAAAG--A---ACGAAATAAAGTTATAAA----TGA-TTAAAAAAAATCTTA-GCTCGTTTGACTGTTT-----ATTTACCATAACAG-AA--TTCTACTTGA--AAATATATTAACC-TGAATTG-ACCGCGCGGCGCGCCGGTCGCGCCGAATACAA-tg
gi|6 : aagcaaaacgacaaaaagcacattgagtcgactctgtttttgaaggggaggaggggggggggagggggggcaagcaaaaaaaatttaaaaaaactatggacattgttcttgtaattacctagactagacatgcattatagcttgaaaaataattgataaaatattctgccccccccccctccacttttaaaagtggggcgggggataccccactcacccgggctccttattaccgtacgcccatggcgtgttaaaatcaagttaagacgggaattgaggtttttctttcaagacatgatgtataatgatcaatctcatgcatgtaattactggcagtttatccgacatttcatccacaccttccaaatctgtcatgttaccggtcttgcatgttacacgattgattactatgagatttagagcacattattgaaaagaccggggggggggtggttaggttgacttctgtgcatgtaggcctaaagtaatatacttttaataatgcatatttaatttaatgaagtgatatgaaattattttgtaaacaA-AGTTTGACGG---TTGAT-T-AT---TA-----T---AAGA---CACT---AGGAAAGGATTCG-GG--TTT-AG-------CCTTATTTAGC--A--TA-------T-ATTT-TTTG-AAAT--AAAAGTGG-AG-A-CC-A-CTG-TGTGTATCCTCGC-ATCT-AAACA--CGTGATTTATTAGGGAAAAAAA-TACCAA-ACAAACAGTTAAAG-AGTAAA-TA------TATAT-CTTTATCAAA-TATGA--TAGCCA--AAATATACAAAGTAACATTGTATGGAGTTTGATGACTTTG-AAAAATT-GCTGATCC-TCG-AACTTTAATTC---------TGATTGGA--CTCGATATTTGTGGTTCAG-TTATTT---CCGT-ct
gi|5 : gtataataatctattgtcatatagtgcagatactgcccagttcatctgaaattttatctcacccttccatataatgtaccaagtaccagctagggtcttataggagtataacattgaaagagcgaatgggagaggagggcgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaGTTGGGCGC---T--AA-T-ATGCATA-----TTAAAGGGACCCACCTGGGGGAAGGATTGGT-TGAAATT-GGTATGGATCCC--CCTGTT-GAAGTAAAT-AA-TAATTCATGT--TCAT-GAAAAttataaaaaacgaatcaaat
gi|10 : aaatcaatgtggcaagcagaacaaaaaaggcacacttgaactactctgtttttggacggggggggggggggcaggcaaaaagaaaaaaagacatagacactgttctgtaacactagactagtaattgcatatagcttgaaaaaatactttgataaaatagtttgccccccccccttccttcactcttaaaagtggggcaggggtgcccgccccccggcttcctacgcccagctgttatcaatacagacgggaatgcaggttttcgttaagacatgtggtctatactgacagatgatgtataatgatcaaattctcatgtgtagataccatgtacttgtcagtcttaatccgacacttccatctcagcaccttgccaaaatatgtcatatgtaccaggggtctgtgctgtacacgtttgatttactatgggatttagaggcaattattgaaagagaagggggggggggtagtttgaacttcatgtgcatgtaggcctaaagtaaatatatatattattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaacATTTG-TCAT--AAAAGTGG-AG-ACCACG-GTA-TGTATTC--TCGC-A
gi|47 : aatgttgaaggagcgaaatgggggtttcacatgggccttggcgtgagtaagttagatatattgaaggaataaataacatgagcaatttgagtataaatttaaaagtacataatatttggggaaaaaatctcacggctgattgatcgatataagacactggctcatcctttaccttacatGTGG-AG-A-CA-G-CTA-TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTAT
gi|50 : -A-CA-G-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTT-ATTT
gi|11 : AT-CTTTATCAAA-TATAA--TAGCCAT-GCAT----AG---A--------------------A---TGTGAAAT-T-GCTG-AGC-TTCGAACC----TTT---------TGATTGGGC--TCGATATT--CGAATAAG-CTTTGT---CTGT-AAGAAAAGCAA---GCGAT--AAAGCTA--AAAGGTTAATTTAAAAAAAACCC-A-TCTTATTTGAGTGTTTATTACATT-ACCATAACAA-AA--TTATACT--G--A-------TAA-----A-TAG-AC------GC-CG--GA-CGCGCCAAATACAA-
gi|12 : AGA-TATAAAGTATCACT-AGAA---TATTG----------------------ACTTTA-AAAAA-T-TCGG-AGC-CTC-AAAC----GTT---------TGAT-------------------AA-AAG-ACACTT--------GAGAAAAACAAAAAGCGATG-AA-GCTG--AA----AGG-TTACGAAAG-TCA-A-GATCGTTTGAATG--T-----AT--------------A--TTCTACT--G--AAA---ACTGA-CATAA-TTG-AC------GCGCG--AT-CGTTCCGAACAct
gi|13 : tactaaatataatagctaaaAAAA-T-GCTG-AGCCTCC-AACC----TTTAGACTATTTTGATTTGGG-CTCGATATT--CGAATAAG-CTATTT---CCAT-AAAAAAAGCAA---GCGAT--AAAGCTA--AA----TGA-TTGAAACAAATCG-AGGCTCCTTTGAGTGTTT-----ATT--CCATAACAGCAAC-TTCTACT--GGAAAAAATA-TAACCATGA-TTG-G-------GTGCG--
gi|20 : AGCAA---GCGATA-AA-GCTA--AA----TGA-TTAAACAAAATCT-A-GCTCGTTTGAGTGTTT-----ATT-CCCATAACAA-AC--TTCTACT--G--AAAAATATTAACCATGA-TT-----------------GG-TGCGCCCAATACAACTAGccaataacaaa
gi|23 : -AAAACCA--AA----CGG-CTAAGAAAA-TCA-A-GCTCATTTGAGTGTTT-----ATT-ACCATAGCTG-AA--TTCTACT--G--AAAAACATTGTCCACAA-TTGAA-------GCGCA--GA-CGCGCCGAATAC
gi|18 : c-A-GTTCATATGGGTGTTT-----ATC-ATCAGAGCA--AATTTTCTACT--G--AAATtact
gi|46 : attcaattagtaattttagcatacatttacataaataattgataaaattatgacagtaaattggtttgagacattggtggagggaaggtaataAATATATTAACCATGA-TTG-AC------GCGCG--GG------CGAATACAACTAGcaaagtattgagagtactgt
14 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): CACCGAGTAATAAACAGGCAACTGAATGCTATGTATTATGAACAGACAAATGAATGTTTGTAATAAATAGACAAATATGTTTTATAAAAATATTGAATAATTCGTATTTCAGC
Unaligned ( gi|29 ): CAAGCAGAAAGGGGGCACATAGACACTGTTTAGTAACTATACTAGACTGTCTAGTAATTCGTTTGAAAAAACTTGATTCGTGTAAAAACATCTAAATCATA
Unaligned ( gi|31 ): AAACATTATTTTGCCTTCTTACCCCTTTCTATGAGGGAAAGGGGGGGGGGGTGCAGTTGTATCCCATATATCCCGGCTCCTACGCCCATG
Unaligned ( gi|32 ): AGAAAAAAAGGGGGGAGGCAATAACTTACTTTTGCCCTCTCTTTTCAAAAAGGGGGGGGGGGATGCCTCCCGGTTCCTATGGACATGGAA
Unaligned ( gi|34 ): AAAACATACTATTATACTATTGCCCCCCCCCCTTTTCAAAAGTGGGGAGCAATTGCCCCCACCCCCCTTCCGGCTCCTACGCCCAAGA
Unaligned ( gi|35 ): ATAGGGAGGGGGATTACTGGCTTTAAATGGGCCCAGGAGAAAATATTTTTTAATAACAATTGAGCGTAACTTATGATAATTGATAAA
Unaligned ( gi|36 ): CTTTAAAGTGTGATCCGTATAAGGACCAACCTCATTCATGTGGGCATCGACAGTTTTTCAGACATTTTCGGCAATCCTTTC
Unaligned ( gi|38 ): CAATGAACATGCAGTGCAGATACAGCCCAATTTATCTGACAATTTATCTCGCCTTTCCGTGTATTGCAAGTATCA
Unaligned ( gi|41 ): TAATTTGTTTTGATTGGGGGGGGGGGGGGGGGGTTGGTAAAAAAAAAAAAAGACAGAG
Unaligned ( gi|43 ): GAGGTGGATGGACTTCTAATTATGCCCCACCCGGCTCCTACGCCCATGT
Unaligned ( gi|45 ): GGGGGGGGGGGCAATTGCCTCCCCATGTCCCCGGCTCCTACACCCAT
Unaligned ( gi|48 ): AGGCACATAGTCACTGACCTTTTTTGAAAGGGGGGGGGG
Unaligned ( gi|49 ): AGCCCCTTCCACCTTAATATTATTTATGTAGCTAAAA
Unaligned ( gi|51 ): CCCCCCCCCTTTGATAGTGGTATTTAGAGGG
Alignments
lowQualScore : 1 111 11111 444444444444444444444444444444444444 333333333 11111111 111111 11111111 11111111 1111111 444444444444444444444444444444444444 1111 88888888888888888888888888888888888888 111 3333333333 1 1111 111111111111 22 111111111 11 11 111 111 7777777777777777777777 111 222222222 11 1 1111 111 1111 111111 3333333 111111 11 222 11 11 11 2222 1111111111 1 111111111 111 11111 1 111111 1111 11 4444444444 1 44444444444444 88888888888888888888 1 333333333 11 11111 1111111
lowQualScore : 0 777 22222 5 4 666666666666666666666666666666666666 000000000 66 66666666 66 111111 00000000 55 3 22222222 0000000 3 444444444444444444444444444444444444 5 2 66 2 2 77 555 2 6666 5555 0000 2 77 44444444444444444444444444444444444444 666 1 33 0 1111111111 2 2 1 5555 33 888888888888 444 2 2 888888 33 88 000000000 2 99999999 3 11 0 11 8 5 88 222 8 666 2222222222222222222222 1 77 5 222 55 0 333333333 0 5 5 5 77 0 5 0 0 5 3333 5 5 000 5 3 77 5 7777 666666 0000000 666666 1 1 5 1 5 00 111 55 33 1 5 8 11 11 1111 5 4444444444 5 5 444444444 999 111 2 6 1 6 66666 0 111111 1 0000 6 5 00 5 5 5 5 0 5 66 5 5 5 9 3333333333 0 33333333333333 6 5 5 777 00000000000000000000 3 5 5 22 5 5 0 222222222 5 11 66 5 5 888 5 888 99 7 66 9999 0 4 0 55 4 4 0 00000 1 44 99 55 55 4 5 4 66 4 7777777 0 4
lowQualScore : . ... ..... . . .................................... ......... .. ........ .. ...... ........ .. . ........ ....... . .................................... . . .. . . .. ... . .... .... .... . .. ...................................... ... . .. . .......... . . . .... .. ............ ... . . ...... .. .. ......... . ........ . .. . .. . . .. ... . ... ...................... . .. . ... .. . ......... . . . . .. . . . . . .... . . ... . . .. . .... ...... ....... ...... . . . . . .. ... .. .. . . . .. .. .... . .......... . . ......... ... ... . . . . ..... . ...... . .... . . .. . . . . . . .. . . . . .......... . .............. . . . ... .................... . . . .. . . . ......... . .. .. . . ... . ... .. . .. .... . . . .. . . . ..... . .. .. .. .. . . . .. . ....... . .
lowQualScore : 0 000 77777 0 4 222222222222222222222222222222222222 666666666 11 11111111 11 555555 66666666 00 3 11111111 0000000 1 222222222222222222222222222222222222 7 9 88 9 9 33 444 9 1111 7777 0000 7 33 88888888888888888888888888888888888888 999 0 77 9 4444444444 4 4 8 1111 77 000000000000 777 7 7 000000 77 77 777777777 7 77777777 1 00 8 00 0 6 88 000 0 666 4444444444444444444444 0 99 0 333 00 1 999999999 3 7 7 7 11 1 7 1 1 7 9999 7 0 000 7 0 99 7 9999 444444 7777777 444444 4 4 7 4 7 77 777 00 66 0 0 0 00 22 3333 7 6666666666 0 0 333333333 888 777 2 7 7 7 77777 8 777777 0 0000 7 7 00 7 0 0 0 1 0 99 7 7 7 3 0000000000 6 00000000000000 7 7 7 333 00000000000000000000 7 0 0 99 0 0 1 555555555 0 99 99 0 0 888 0 888 66 3 11 4444 8 4 8 00 0 0 7 00000 3 77 55 55 55 7 0 0 55 0 0000000 1 4
consensus : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GA----CT----AGTAAT-T--CATTATAGC-TTGAAAAA--TACTT-------------------GAT----------------AAA---ATAGTTTTGCCCCCCC--CCCCCCCC--CCG--CAC-T-TT-AAAAGTGGGG--C-GGG--G-A--TA------CCC---C-C-CCACC---C--CCGGC-TCC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACATT-CGG-C---TACTGA--GCGTGAT--GTATAATGATCAATTTCTCATGCAATGTAGATATC------TTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-CA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTTGAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC----------TATAAATATAAACAGTTTAGGCAG--AA-TACTT-ATTATAT-CCTTATC-AGATATAATAGCCA-TA-G-ATACAACGTA--------------------ACTTT-GAAAA-T-GCTGAGC-CCC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAA-G-CTAT---TTCCG-TAAGAAAAGCAA---GCGATA-AAAGC--TAAA----TGATT-AAAAAAAATC-NA-GCTCGTTTGAGTGTTTA-TTAC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
Reference ( family-189 ) : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATNGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GA----CT----AGTAAT-G--CATTATAGC-TTGAAAAA--TACTT------------------NGAT----------------AAA---ATAGTTTTGCCCCCCC--CCCCCCCC--CCG--CAC-T-TT-AAAAGTGGGG--C-GGG--G-A--TA------CCC---C-C-CCACC---C--CCGG--TCC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACAT--CGG-C---TACTGA--GCATGAT--GTATAATGATCAATTTCTCATGCAATGTAGATANC------TTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-CA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTTGAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATGTGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC----------TACAAATATAAACAGTTTAGGCAG--AA-TA----ATTATAT-CCTTATC-AGATATAATAGCCA-TA-G-ATACAACGTA--------------------ACTTTGGAAAA-T-GCTGAGC-TCC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAA-G-CTAT---TTCCG-TAAGAAAAGCAA---GCGATA-AAAGC--TAAA----TGATT-AAAAAAAATC-NA-GCTCGTTTGAGTGTTTA-TTAC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
gi|1 : AAGCAAAACGAC-AAAAAGCA-CA-T------T------GAGTCGA--CT--CT--G-----TTTTTGAAGGGGAGG--AGGGGGGGGGGAGGG--GGGG------CA-----A--GC--AA-AAAAAATTTAA-------AA-AA---------------A-----CTATGGA-------CA-T-TGT--T-CTTGTAATTAC-CT---A-GA----CT----AGACAT-G--CATTATAGC-TTGAAAAA--TAATT-------------------GAT----------------AAA---ATA-TTCTGCCCCCCC--CCCCTCCA--C------T-T-TT-AAAAGTGGGG--CGGGG--G-A--TA------CCC---CAC-TCACC---C--GGGC--TCCTTATTACCGT-A--------CGCCCATGGCGTGTTAAAATCAAGTTA-AGACGGGAATTG-AGGTTTTTCTTTC-AAGA-----------------------CATGAT--GTATAATGATCAA--TCTCATGC-ATGTAATTAC--------TGGCA-GT-T-T-ATCCGA-CA-TTTC-ATC----CACACCTTC-CA---AA-TCTGTCAT--GTTACC------GGTCT------TGCA-------TGTTACACGATTGA-TTACTAT-GAGATTTAGA-GCACATTATTGAAAAGACCGGGG--GGGGGGTGGTTAG-------GT-T--GACTTC--TGTGCATGTAGGCCTA----A-AGTAATATACTTTTAA-TAATGCATA-----T---
gi|1 : CAAA-AATGGCGCGT---TAA-TTATGCATAAGTTTT---AAGAATT-------GGGAAGGGATGTAT-GAACTTTGGTA-----CCC-ACT--GTATA--TAGAT-CCCT-AG-CATTTGGTCATTGAAA--TGG-AGGA-CAGGCTGATGTATAT--TCGCCACTTTAAA-ACTTTTGATTTATCCA---------TATAAATATAAACAGTTCAGGCAA--A---A----ATCATAG-CCTTATCAAAATATAATAGCCATTA-G-ATACAACTTA--------------------ACTTTTGAAAA-T-GCTGAGC-CTC--ACCTTT---------TGATT-GGGTTCTCGATATT--CGAATAAGG-CTATTTGTTCCGTTAAAGAAAG--A---ACGAAATAAAGTTATAAA----TGATT-AAAAAAAATCTTA-GCTCGTTTGACTGTTTATTTAC-----CATAACAG-AA--TTCTACTTGA--AAATATATTAACC-TGAATTGACCGCGCGGCGCGCCGGTCGCGCCGAAT-ACAACTttaatttaatgaagtgatatgaaattattttgtaaacacaaaaatggcgcgttaattatgcataagttttaagaattgggaagggatgtatgaactttggtacccactgtatatagatccctagcatttggtcattgaaatggaggacaggctgatgtatattcgccactttaaaacttttgatttatccatataaatataaacagttcaggcaaaaatcatagccttatcaaaatataatagccattagatacaacttaacttttgaaaatgctgagcctcaccttttgattgggttctcgatattcgaataaggctatttgttccgttaaagaaagaacgaaataaagttataaatgattaaaaaaaatcttagctcgtttgactgtttatttaccataacagaattctacttgaaaatatattaacctgaattgaccgcgcggcgcgccggtcgcgccgaatacaact
gi|10 : aagcaaaacgacaaaaagcacattgagtcgactctgtttttgaaggggaggaggggggggggagggggggcaagcaaaaaaaatttaaaaaaactatggacattgttcttgtaattacctagactagacatgcattatagcttgaaaaataattgataaaatattctgccccccccccctccacttttaaaagtggggcgggggataccccactcacccgggctccttattaccgtacgcccatggcgtgttaaaatcaagttaagacgggaattgaggtttttctttcaagacatgatgtataatgatcaatctcatgcatgtaattactggcagtttatccgacatttcatccacaccttccaaatctgtcatgttaccggtcttgcatgttacacgattgattactatgagatttagagcacattattgaaaagaccggggggggggtggttaggttgacttctgtgcatgtaggcctaaagtaatatacttttaataatgcatatttaatttaatgaagtgatatgaaattattttgtaaacaATTTG-TCAT--AAAAGTGG-AG-A-CCA-CGG-TATGTAT--TC
gi|11 : aatgttgaaggagcgaaatgggggtttcacatgggccttggcgtgagtaagttagatatattgaaggaataaataacatgagcaatttgagtataaatttaaaagtacataatatttggggaaaaaatctcacggctgattgatcgatataagacactggctcatcctttaccttacatAT-CTTTATC-AAATATAATAGCCA-TG-C-ATAGAATGT---------------------------GAAAT-T-GCTGAGC-TTCGAACCTTT---------TGATT-GGG--CTCGATATT--CGAATAA-G-CTTT---GTCTG-TAAGAAAAGCAA---GCGATA-AA-GC--TAAAAGGTTAATTTAAAAAAAACC-CA-TCTTATTTGAGTGTTTA-TTACATTACCATAACAA-AA--TTATACT--G--A-------TAA------ATAGA-CGC-CGG-A-------CGCGCCAAAT-ACAACTtcgca
gi|12 : TACT-AAATATAATAGCTA-AAAG-ATATAAAGTATCACTAGAATATTG------ACTTTAAAAAA-T-TCGGAGC-CTC-AAACGTT---------TGAT--------------------AA-AA-G-ACAC---TT-----GAGAAAAACAAAAAGCGATG-AA-GC--TGAA----AGGTT-ACGAAAG-TC-AA-GATCGTTTGAATG--TA-T------------------A--TTCTACT--G--AAA---ACTGA-CATA-ATTGA-CGCGCGA-T-------CGTTCCGAAC-
gi|13 : AAAA-T-GCTGAGCCTCC-AACCTTTAGACTATTTTGATTTGGG--CTCGATATT--CGAATAA-G-CTAT---TTCCA-TAAAAAAAGCAA---GCGAT--AAAGC--TAAA----TGATT-GAAACAAATC-GAGGCTCCTTTGAGTGTTTA-TT-C-----CATAACAGCAAC-TTCTACT--GGAAAAAATA-TAACCATG-ATT--------GG-G-------TGCGCC-AATAACAA
gi|14 : -GA----TT----AGTA-T-T--CATTATAGC-TTGAAAAA--TACTT------------------TGAC----------------AAa
gi|15 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtCACGCAAAA-AATTAAAAGGCA-CA-TAG----T------CA--C----TGATCT--G-----TTTT---------GA--AAGA--------GGG--GG--------CATTCTTA--AA--AA-A--------AATAAGGAGAA-AAGGC------------A-----C-AGAGAC-------A-C-CGT--T-C-TGTAACTA--CT---A-GA----CT----AGTAAT-T--CATTtaagggggggggaggggggggggggggggggggcatagttttgcccccattttcaaaagtgggggagagggtgaattgcccacacacccttcccc
gi|16 : catgcaggataggcataggactgggacaaacttctaaacaatgtgaaaaaaA-----A--TC--AA-A--------AT-------AATAA---------------G-----C-GTAAAAAA----CA-C-TGT--T-C-TGTAACTA--CT---T-CA----CT----AGTAAT-T--CATTATAGC-TTGAAAAA--TACTTGACAATAGGAGGG-----GGAC----------------AAAAACATAGTTTTGCCTCCTC--C--------------TAC-T-TTCAAAGGTGG------GGG--G-AT-TA------TCC---C-C-CCA-----C--CCGGC-TCC---------A-A--------CGCCCAT-G
gi|17 : ctgtaC--AA-A--------AA-------TA-AA-------------------------GGAC------AAAC-TGTG-T-C-TGTAAATA--CT---AAGA----CT----GATAAT-T--CATTACAGC-TTTAAAA---TACTT-------------------GAC----------------AAA---A
gi|18 : aaaatgtgtataAAT--AA-GTTCATATGGGTGTTTA-TCAT-----CAGAGCA--AATTTTCTACT--G--AAATgataggggggggggcataacatcctttcatgttttgcccctcccttttcaagtgggggcaaatcccatgcccacg
gi|2 : attcaattagtaattttagcatacatttacataaataattgataaaattatgacagtaaattggtttgagacattggtggagggaaggtAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCAACA-T------T------AA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAC------CA-CATGT--T-C-TGTAATTA--CT---A-GA----CT----AGTACG-G--CATTATAGC-TTGAAAAA--TACTT------------------AGAT----------------AAA---ATAGTTTTGCCCCCCC--CCCCCCCC--CCGT-CAC-T-TT-AAAAGTGGGG--C-GGG--G-A--TA------CTC---C-C-TCACC---C--CCGG--TTC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AG-CGGAGA-T--AGG-TTTTCTTACTAAGAACATTGCGGTC---TACTGA--GCATGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATATC------TTGTCA-GT-T-TAATC--A-CATTTTC-ATC---ACAC-TCTTC-CA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTATCGAGATTTAGA-GCA-ATTA--TGAAAGAGCGGGGA-GGGGGGGGGGGGGGGGGGTAGT-T--GATTTCGGTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC----------TATAAA-ATAAACAGTTTAGGCAG--AA-TACTTTATTATAT-CCTTATC-AGATATAATAGCCA-TA-G-AT-CAGCGTA--------------------ACTTTGGAAAA-T-GCTGTGC-TCC-AACCTTT---------TGATT-GGGC-CTCGATATT--CGAATAA-G-CTAT---TTCCG-TAAGAAAAGCAA---GCGATA-AAAGC--TAAA----TGATT-AAAAAAAATC-TA-GCTCGTTTGAGTGTTTA-TTAC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA--GCGCGG-G-------CGCGCCGAAT-ACAA-TAGcaaagtattgagagtactgt
gi|20 : ctaataAGCAA---GCGATA-AA-GC--TAAA----TGATT-AAACAAAATC-TA-GCTCGTTTGAGTGTTTA-TTCC-----CATAACAA-AC--TTCTACT--G--AAAAATATTAACCATG-ATT---------G-G-------TGCGCCCAAT-ACAACTAG
gi|22 : TAGAC-------A-C-TGT--T-C-TGTAACTA--CG---A-GA----CA----AGTAAT-T--CATTATAGC-TTG
gi|23 : ct-AAAAC--CAAA----CGGCT-AAGAAAA-TC-AA-GCTCATTTGAGTGTTTA-TTAC-----CATAGCTG-AA--TTCTACT--G--AAAAACATTGTCCACA-ATTGA-AGCGCAG-A-------CGCGCCGAAT-ACTACTgcacttttttataataagggggggggaggggggcatagttacctggctccagtgtacgcccatg
gi|24 : c-T------T------GA--C----CTA-CTCTG-----TTTT---------GA--AGGG--------GGGTGGGGG------CA-----A--GC--AA-A--------AA-------AA-AACCATAATACAAACAAA-----C-ATGGAC-------A-C-TGT--T-C-ATTAATTA--CT---G-GA----CT----AGTAAT-G--CATTATAGC-
gi|25 : A---ATAGTTTTGCCCCCCCCTCCCCCCCC--CCG---AC-T-TT-CAAGGGGGG
gi|26 : gaagttgtaactgaaaaatactttacatacaacaggggtaggaggggggtggggtggcaaaatCCCCT--CCG--AACGT-TC-AAAGGTGGGT--G-GGG--G-A--GT------CCC---T-C-CCGCT---C--CC------------------A--------CGCCCAT-G
gi|27 : tgtaactggaaaaatactttaacaatacagtgggagggcgcaaatcaaagA---ATACTTTTGCCACCCC--CC----CC--CCG--C-T-T-TT-AAAAGAGG------GGG--G-T--TA------CCC---C-C-CC-CCTTTT--CCGGGCTCC---------T-A--------CGTCCAT-G
gi|28 : gttacttgaccaaaaaaaaggggggggtGCAAT-T--CATTATAGC-TTGAAAAA--TACTTGA----------------CGATTGGTGGGGGAAGGCAGAAAC--ATAATGTTGCTCCCCC--CCCCC
gi|29 : ------CA-----A--GC--AG-A--------AA-------GG-GGGC-------------A-----C-ATAGAC-------A-C-TGT--T-T-AGTAACTATACT---A-GA----CTGTCTAGTAAT-T--C------GT-TTGAAAAA---ACTT-------------------GAT----------------tgataaatgaaattgccaccccggttc
gi|3 : AT-AAGT-TGGCAAGCAAAA-GAC-AAAAGCAA-CA-T------T------GAA-C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAT------CA-C-TGT--TTC-TGTAATTA--CT---A-GA----CT----AGTACG-G--CATTATAGC-TTGAAAAAAATACTT-------------------GAT----------------AAA---ATAGTTTTGCCCCCCC--CCCCCCCCACCCGT-CAC-T-TT-AAAAGTGGGG--C-GGG--G-A--TA------CTC---C-C-TCACC---C--CCGGA-TTC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGCCGGGA--TA---G-TTTTCTTACTAAGAACATT-CGG-C---TACTGA--GCATGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATATC------TTGTCAAGT-TGTAATC--ATCATTTTCTATC---ACAC-TCTTCGCA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTAT--GAAAGAGCGGGGAGGGGGGGGGGGGGGGGGGGTAGTAT--GATTTC-GTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGTTGAACTT-GGTA-----CCCGACTTGG--TA--TAGATCCC-T-ATTCATTTG-TCAT-G-AAAGTGG-AG-ACCAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC----------TATAAATATAAACAGTTTAGGCAG--AATTACTT-ATTATAT-CCTTATC-AGATATAATAGCCA-TA-G-ATACAGCGTA--------------------ACTTT-GAAAA-T-GCTG----TCC-AACC-TT---------TGATT-GGG--CTCGATATT--CGAATAA-G-CTAT---TTCGG-TAAGAAAAGCAA---GCGATA-AAAGC--TAAA----T-AGT-ATAAAAAATC-TA-GCTCGTTTGAGTGTTTA-TTAC-----CATAACAG-AA--TTCTACT--G--AAATATATTAA-CATG-ATTGA-CGCGC-G-G-------CGCGCCGAAT-ACAACTtcgtgtaaaaacatctaaatcata
gi|30 : GACACGCAAAA------AAGGGCA-CA-T------A------GT--C------A-CT--GATTTATTTT---------GAAGAGGG--------GGG--GGGG------CA-----T--TCTTAA-G--------AA-------AA-GGC--------------A-----C-ACAGA-------CA-C-TGT--T-C-TGTAA
gi|33 : aatgtgacaa-CA---AA-TATCTCAT--G-TACC----GGGGTCT------TGCATACA---CGTC------TTGATTTACTAT-GGGCTTTAGA-GCA-ATTATT-GAATGAG-GGGG--GGGGGGGGGG
gi|34 : C--CCCCCCCC--CT-----T-T-TC-AAAAGTGGGG--A-GCA--A-T--TG------CCC---C-CACCCCC---CTTCCGGC-TCC---------T-A--------CGCCCA
gi|36 : aaaacatactattatactattgA--GTGTGATCCGTATAAGGACCAAC--CTCATTCA-TGTGGGCATC--------GACA-GT-T-TT-TCAGA-CATTTTC-GGC---A-AT-CCTTT-Caga
gi|37 : ctttaa--CCCCCCCC--CC-----C-T-TT-CAAAAAGGGG--T-GGGTGG-G--TAATTGCCCCCGTGC-C-CCACC---C--CCGGC-TCC---------T-A--------CGCCCAT-G
gi|39 : ttgCCCC--CCCCACAC--ACA--CAC-T-TT-GGAAAGGGGG--G-GGG--G------------CCC---C-A-TCTCC---C--TCGGC-TCC---------T-A--------CGCCCAT-Ga
gi|4 : T----AGTAAT-G--CATTATAGC-TTGAAAAA--TAATT------------------C-AT----------------AAA---ATATTTCTGCCCCCCC--CCTCCACT-----------T-TT-ACAAGTGGGGG-C-GGG--GGA--TA------CCC---C-C-TCACC---C--CGGC--TCC---------T-ATACCGTGACGCCCAT-GCGTGTT--AATCAG--TA-AGACGGGAA-TG-AGG-TTTTCTTA------ACA--------------------CGTGAC--GTATAATGATCAATC-CTCATGCAATGT-GATAGT------TTGTCA-GT-T-T---TCGA-CATTT-C-ATC---ACAC-C-TTC-CA---AA-TCT-TCAT--G-TACC----GGG-TCT------TGCAATGTACACGTT------TTGATTTACTAT-GAGATT-AGA-GCA--TTATT-GAAAG--CGGGG--GGGTGGGGGTG-------TAGT-T--GACTTC-GTGTGCATGTA-GCCTA----A-AGTAG---------AA-TAATGCATA-----T---at
gi|4 : ACCACATAAT--GGCGC---TAAAT-ATGCATA-----TT--AAGA---CATT---GGGAAGGAGGATGT-TGACT---GTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGGAAG-A-CAG-C---TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATCC----------TACGAATATAAACAGTTTAGGCA---AA-TA------TATATAGCTTACC-AGATATAATAGCCA-TA-G--TACAACGTA--------------------ACTTT-GAAAA-TAGCTGA---CCC-AACCTTT---------TGATT-GGG---TCGATATT--CGAATAA-GCCTAT---TTCCG-TAAGAAAAACAA---GCGAT--AAAGC--TAAA----TGA-T-GAAAAAAATC-TA--CTCGTTTGAGTGTTTA--TAC-----CATA--AG-AA--TTC-ACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-GC------CGCGTCttaatttaataatgatatgaattatttgtaaccacataatggcgctaaatatgcatattaagacattgggaaggaggatgttgactgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctg
gi|40 : tagtaatgcattatagcttgaaaaataattcataaaatatttctgccccccccctccacttttacaagtgggggcgggggataccccctcaccccggctcctataccgtgacgcccatgcgtgttaatcagtaagacgggaatgaggttttcttaacacgtgacgtataatgatcaatcctcatgcaatgtgatagtttgtcagttttcgacatttcatcacaccttccaaatcttcatgtaccgggtcttgcaatgtacacgttttgatttactatgagattagagcattattgaaagcgggggggtgggggtgtagttgacttcgtgtgcatgtagcctaaagtagaataatgcatatttaatttaataatgatatgaattatttgtaCC--CCGTCCAC-T-TTCAAAAGTGGGGAGC-GGG--A-AA-TT------TCC---C-C-CCTCC---C--CCGGG-TCC---------T-A--------CTCTCAT-Gtg
gi|42 : CCCCCCC--CC-----T-T-TT-GAAAGTGGGG------G--G-G--CG------CCC---C-C-CC-TC---C--CTGC--TCC---------T-A--------CGCCCAT-G
gi|44 : ----------------AAG---ATAGTTTTGCCCCTCC--CC-------------CAC-T-TTCAAAAGtt
gi|46 : ggggggggggggcaaaAATATATTAACCATG-ATTGA-CGCGCGG-G------------CGAAT-ACAACTAG
gi|47 : GTGG-AG-A-CAG-CTA-TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATccaa
gi|48 : AGGCA-CA-TAGTCACT------GA--C----CT---T--------TTTT---------GA--AAGG--------GGG--GGGG------
gi|5 : AAATCAA-TGTGGCAAGCAGAA-CAA-AAAAGGCA-CACT------T------GA--A----CTA-CTCTG-----TTTTTGGACG---GG--GGGG--------GGG--GGGG------CA-----G--GC--AA-A--------AA-------GA-AA---------------AAAAGAC-ATAGAC-------A-C-TGT--T-C-TGTAAC-A--CT---A-GA----CT----AGTAATTG--CAT-ATAGC-TTGAAAAAA-TACTT------------------TGAT----------------AAA---ATAGTTT-GCCCCCCC--CCCTTCCT--TC----AC-TCTT-AAAAGTGGGG--C-AGG--G-G--TG------CCC---G-C-CC------C--CCGGCTTCC---------T-A--------CGCCCA--GC-TGTT--A-TCAA--TACAGACGGGAA-TGCAGG-TTTTCGT--TAAGA-CATG-TGG-TCTATACTGACAG-ATGAT--GTATAATGATCAAATTCTCATG---TGTAGATACCATGTACTTGTCA-GTCT-TAATCCGA-CACTTCC-ATCTCAGCAC-CTTGC-CA---AAATATGTCATATG-TACCA---GGGGTCTGTGCTGTACA-------CGTT------T-GATTTACTAT-GGGATTTAGAGGCA-ATTA-TTGAAAGA------------GAAGGGGGGGGGGGTAGT-TTGAACTTC-ATGTGCATGTAGGCCTA----A-AGTA----------AA-T-ATATATA-----T---g
gi|5 : GTTGGGCGC---TAA-T-ATGCATA-----TTAAAGGGACCCACCTGGGGGAAGGATTGGTT-GAAATT-GGTATGGATCCC--CCTGTT-GAAGTAAAT-AA-TAATTCATGT--TCAT-GAAAAtattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaacgttgggcgctaatatgcatattaaagggacccacctgggggaaggattggttgaaattggtatggatccccctgttgaagtaaataataattcatgttcatgaaaa
gi|50 : aaatcaatgtggcaagcagaacaaaaaaggcacacttgaactactctgtttttggacggggggggggggggcaggcaaaaagaaaaaaagacatagacactgttctgtaacactagactagtaattgcatatagcttgaaaaaatactttgataaaatagtttgccccccccccttccttcactcttaaaagtggggcaggggtgcccgccccccggcttcctacgcccagctgttatcaatacagacgggaatgcaggttttcgttaagacatgtggtctatactgacagatgatgtataatgatcaaattctcatgtgtagataccatgtacttgtcagtcttaatccgacacttccatctcagcaccttgccaaaatatgtcatatgtaccaggggtctgtgctgtacacgtttgatttactatgggatttagaggcaattattgaaagagaagggggggggggtagtttgaacttcatgtgcatgtaggcctaaagtaaatatatatattattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaac-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTT-ATTT
gi|6 : --GTATAATAATCTATTG-TCATATAGTGCAGATA-C------TGCCCA-GT-T-CA-TCTGA-AATTTT--ATC---TCAC-CCTTC-CATATAA-TGTACCAA--G-TACCAGCTAGGGTCT------TA----------------------------TAG-GAG---TATA-ACA------TTGAAAGAGCGAAT--GGGAGAGGAGGG
gi|6 : TA-----T---AAGA---CACT---AGGAAAGGATTCGG-G--TTT-AG-------CCTTATTTAGC--A--TA-------T-ATTT-TTTG-AAAT--AAAAGTGG-AG-A-CCA-CTG-TGTGTATCCTCGC-ATCT-AAACACGT--GATTTATTAGGGAAAAAAATACCAA-ACAAACAGTTAAAG-AGTAAA-TA------TATAT-CTTTATC-AAATATGATAGCCA-AA-ATATACAAAGTAACATTGTATGGAGTTTGATGACTTTGAAAAATT-GCTGATC-CTC-GAACTTTAATTC----TGATT-GGA--CTCGATATTTGTGGTTCA-G-TTAT---TTCCG-Tcgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaaagtttgacggttgattattataagacactaggaaaggattcgggtttagccttatttagcatatattttttgaaataaaagtggagaccactgtgtgtatcctcgcatctaaacacgtgatttattagggaaaaaaataccaaacaaacagttaaagagtaaatatatatctttatcaaatatgatagccaaaatatacaaagtaacattgtatggagtttgatgactttgaaaaattgctgatcctcgaactttaattctgattggactcgatatttgtggttcagttatttccgtttataaaaaacgaatcaaat
gi|7 : gtataataatctattgtcatatagtgcagatactgcccagttcatctgaaattttatctcacccttccatataatgtaccaagtaccagctagggtcttataggagtataacattgaaagagcgaatgggagaggagggcgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaaagtttgacggttgattatA-------AA-AA---------------A-----------AC------CA-C-TGT--T-C-TGTAACTA--CTTTCA-GG----CT----AGTAAT-GTTCATTATAGCTTTG--AAA--TACTTGACAATAAGGAGGC----GGAC----------------AAAAACATAGTTTTGCCCCTTT--CCTCC----------TAC-T-TTCAAAGGTGG------GGG--G-AT-TA------TCC---C-C-CCA-----C--CCGGC-TCC---------CAA--------CGCCCAT-Gttataaaaaacgaatcaaat
gi|8 : catatatagactgatttttaatgaggagggagcacacttctaaatgtggcaaagcaaccaaaaaaagggggggcacatgtagagcactttggttgtgtgtgtgttgtgtggtgtgcgtgtaaactgtaatcaaaatatagcgtA-A--------AA-------GC-AC---------------A-----T-ATAGAC------CTTC-TGTATT-T-TGTAACTA--CT---A-GA----AT----AGTAAT-T--CATTATAGC-TCGAAGAA--TACTTGAAAGAAGTGGAGGTTGGGGAA----------------AAAC--ATAA-TTTGCTCCCCC--TCC------------CAC-T-TTCAAAAGTGGGA--G-GGG--C-AATTG------CCA---C-C-ATGCC---C--CCGGC-TCC---------C-A--------AATCCA
gi|9 : caagacactgatctcatttgaatgcgggggagtgggttctaaatgtgacaaacaaaacataggatAAT-AT-G-TAACAAGCAAAA-GGT-AAAAAAAA-AA-T------CCATAAAAA--CAGTGCTG--T--G-----TTTT---------GA--GGGG--------GGG--GGGGGACTTCCA-----AATGT--GATA--------AG-------CA-GAGGGGC----------A-----C-ATAGACACTGTTCA-C-TGT--T-C-TGTAACTA--CT---A-GACTGGCT----AGTAAT-T--CGTTATAGC-TTGAAAAA--
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TCAATGCATGATTTAGATCCATTCTCATTGCATGTATATAATGAAGATACTGACCAGTTTAGCAAAAGTTCCAAGTATAATAAGTACCAGGGTCTTATACTGACAGTTATGTTGAAGGAGCTAGTAAAGGGGATGGGAGCTCTGG
Unaligned ( gi|21 ): CACCGAGTAATAAACAGGCAACTGAATGCTATGTATTATGAACAGACAAATGAATGTTTGTAATAAATAGACAAATATGTTTTATAAAAATATTGAATAATTCGTATTTCAGC
Unaligned ( gi|31 ): AAACATTATTTTGCCTTCTTACCCCTTTCTATGAGGGAAAGGGGGGGGGGGTGCAGTTGTATCCCATATATCCCGGCTCCTACGCCCATG
Unaligned ( gi|32 ): AGAAAAAAAGGGGGGAGGCAATAACTTACTTTTGCCCTCTCTTTTCAAAAAGGGGGGGGGGGATGCCTCCCGGTTCCTATGGACATGGAA
Unaligned ( gi|35 ): ATAGGGAGGGGGATTACTGGCTTTAAATGGGCCCAGGAGAAAATATTTTTTAATAACAATTGAGCGTAACTTATGATAATTGATAAA
Unaligned ( gi|38 ): CAATGAACATGCAGTGCAGATACAGCCCAATTTATCTGACAATTTATCTCGCCTTTCCGTGTATTGCAAGTATCA
Unaligned ( gi|41 ): TAATTTGTTTTGATTGGGGGGGGGGGGGGGGGGTTGGTAAAAAAAAAAAAAGACAGAG
Unaligned ( gi|43 ): GAGGTGGATGGACTTCTAATTATGCCCCACCCGGCTCCTACGCCCATGT
Unaligned ( gi|45 ): GGGGGGGGGGGCAATTGCCTCCCCATGTCCCCGGCTCCTACACCCAT
Unaligned ( gi|49 ): AGCCCCTTCCACCTTAATATTATTTATGTAGCTAAAA
Unaligned ( gi|51 ): CCCCCCCCCTTTGATAGTGGTATTTAGAGGG
Alignments
lowQualScore : 1 111 11111 444444444444444444444444444444444444 333333333 11111111 111111 11111111 11111111 1111111 44444444444444444444444 22222222 1111 44444444444444444444444444444444444444444 222222222222222222222 444444444444 1 1111 11111111111111111111 222222222 11 11 111 111 555555555555555555555555 111 222222222 11 1 1111 111 1111 111111 3333333 111111 11 222 11 11 11 2222 1111111111 1 111111111 111 11111 1 111111 1111 11 222222 22222 2222222 666666666666666666666666666666666666 1 11 333333333 11 1 11111 1111111
lowQualScore : 0 777 22222 5 4 666666666666666666666666666666666666 000000000 66 66666666 66 111111 00000000 55 3 22222222 0000000 3 00000000000000000000000 33333333 2 2 66 2 2 77 555 2 1111 33 2 2 77 3 6 88888888888888888888888888888888888888888 0 666666666666666666666 33 222222222222 2 2 1 8888 33 99999999999999999999 444 2 2 111111111 33 2 999999999 2 88888888 2 11 0 11 8 5 88 222 8 666 333333333333333333333333 77 5 222 55 0 333333333 0 5 5 5 77 0 5 0 0 5 3333 5 5 000 5 3 77 5 7777 666666 0000000 666666 1 1 5 1 5 00 111 55 33 1 5 8 11 11 1111 5 4444444444 5 5 444444444 999 111 0 6 1 6 66666 0 111111 1 0000 6 5 00 5 5 5 5 0 5 66 5 5 5 9 8 333333 0 00000 3 9999999 3 6 5 5 777 888888888888888888888888888888888888 1 11 5 22 5 5 0 222222222 5 11 66 0 888 5 888 99 7 66 9999 0 4 0 55 4 44 00000 1 44 99 55 55 4 5 4 66 4 7777777 0 4
lowQualScore : . ... ..... . . .................................... ......... .. ........ .. ...... ........ .. . ........ ....... . ....................... ........ . . .. . . .. ... . .... .. . . .. . . ......................................... . ..................... .. ............ . . . .... .. .................... ... . . ......... .. . ......... . ........ . .. . .. . . .. ... . ... ........................ .. . ... .. . ......... . . . . .. . . . . . .... . . ... . . .. . .... ...... ....... ...... . . . . . .. ... .. .. . . . .. .. .... . .......... . . ......... ... ... . . . . ..... . ...... . .... . . .. . . . . . . .. . . . . . ...... . ..... . ....... . . . . ... .................................... . .. . .. . . . ......... . .. .. . ... . ... .. . .. .... . . . .. . .. ..... . .. .. .. .. . . . .. . ....... . .
lowQualScore : 0 000 77777 0 4 222222222222222222222222222222222222 666666666 11 11111111 11 555555 66666666 00 3 11111111 0000000 1 77777777777777777777777 66666666 9 9 88 9 9 33 444 9 3333 44 5 7 33 3 7 00000000000000000000000000000000000000000 8 222222222222222222222 77 111111111111 4 4 8 0000 22 11111111111111111111 111 4 4 444444444 22 4 444444444 4 55555555 7 00 8 00 0 6 88 000 0 666 666666666666666666666666 99 0 333 00 1 000000000 3 7 7 7 11 1 7 1 1 7 9999 7 0 000 7 0 99 7 9999 444444 7777777 444444 4 4 7 4 7 77 777 00 66 0 0 0 00 22 3333 7 6666666666 0 0 333333333 888 777 3 7 7 7 77777 8 777777 0 0000 7 7 00 7 0 0 0 1 0 99 7 7 7 3 0 000000 8 00000 2 0000000 8 7 7 7 333 000000000000000000000000000000000000 4 99 0 99 0 0 1 555555555 0 99 99 0 888 0 888 66 3 11 4444 8 4 8 00 0 77 00000 3 77 55 55 55 7 0 0 55 0 0000000 1 4
consensus : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTGAAAAA--TAC-TT-GAC-------------------AA-A-----------------ATAGT---------------------TTTGCCCCCCC--CCCCCCCC--CCG--CAC-T-TT-AAAAGTGGGG--C-GGG--G-A--TG------C-------CC---C-C-CCAC--C----C--CCGGCT-CC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCG-TGAT--GTATAATGATCAATTTCTCATGCAATGTAGATATC------TTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-CA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTTGAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAA-TAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------AC--------------------TTT-GAAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
Reference ( family-189 ) : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTGAAAAA--TAC-TT-GAT-------------------AA-A-----------------ATAGT---------------------TTTGCCCCCCC--CCCCCCCC--CCG--CAC-T-TT-AAAAGTGGGG--C-GGG--G-A--TA------C-------CC---C-C-CCAC--C----C--CCGGCT-CC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCG-TGAT--GTATAATGATCAATTTCTCATGCAATGTAGATATC------TTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-CA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTTGAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAA-TAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------AC--------------------TTT-GAAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
gi|1 : AAGCAAAACGAC-AAAAAGCA-CA-T------T------GAGTCGA--CT--CT--G-----TTTTTGAAGGGGAGG--AGGGGGGGGGGAGGG--GGGG------CA-----A--GC--AA-AAAAAATTTAA-------AA-AA---------------A-----CTATGGA-------CA-T-TGT--T-CTTGTAATTAC-CT---A-GACT----AGACA--TG-CATTATAGC-TTGAAAAA--TAA-TT-GAT-------------------AA-A-----------------ATA-T---------------------TCTGCCCCCCC--CCCCTCCA--C------T-T-TT-AAAAGTGGGG--CGGGG--G-A--TA------C-------CC---CAC-TCA---C----C--CGGGCT-CCTTATTACCGT-A--------CGCCCATGGCGTGTTAAAATCAAGTTA-AGACGGGAATTG-AGGTTTTTCTTTC-AAGA---------------------CA-TGAT--GTATAATGATCAA--TCTCATGC-ATGTAATTA--------CTGGCA-GT-T-T-ATCCGA-CA-TTTC-ATC----CACACCTTC-CA---AA-TCTGTCAT--GTTACC------GGTCT------TGCA-------TGTTACACGATTGA-TTACTAT-GAGATTTAGA-GCACATTATTGAAAAGACCGGGG--GGGGGGTGGTTAG-------GT-T--GACTTC--TGTGCATGTAGGCCTA----A-AGTAATATACTTTTAA-TAATGCATA-----T---
gi|1 : CAAA-AATGGCGCGT---TAA-TTATGCATAAGTTTT---AAGAATT-------GGGAAGGGATGTAT-GAACTTTGGTA-----CCC-ACT--GTATA--TAGAT-CCCT-AG-CATTTGGTCATTGAAA--TGG-AGGA-CAGGCTGATGTATAT--TCGCCACTTTAAA-ACTTTTGATTTATCCATAT------AAATAT-----AAACAGTTCAGGCAAAA-------ATCATAG-CCTTATCAAAATATAATAGCCATTA-G-ATACAACTTA--------------AC--------------------TTTTGAAAA--T-GCTGAGCC-TC-A-CCTTT---------TGATT-GGGTTCTCGATATT--CGAATAAGGCTATTTGTTCCGTTAAAGAAAG--A---ACGAAATAAAGTTATAAA----TGATT-AAAAAAAATCTTA-GCTCGTTTGACTGTTTATTTAC-----CATAACAG-AA--TTCTACTTGA--AAATATATTAACC-TGAATTGACCGCGCGGCGCGCCGGTCGCGCCGAAT-ACAACTttaatttaatgaagtgatatgaaattattttgtaaacacaaaaatggcgcgttaattatgcataagttttaagaattgggaagggatgtatgaactttggtacccactgtatatagatccctagcatttggtcattgaaatggaggacaggctgatgtatattcgccactttaaaacttttgatttatccatataaatataaacagttcaggcaaaaatcatagccttatcaaaatataatagccattagatacaacttaacttttgaaaatgctgagcctcaccttttgattgggttctcgatattcgaataaggctatttgttccgttaaagaaagaacgaaataaagttataaatgattaaaaaaaatcttagctcgtttgactgtttatttaccataacagaattctacttgaaaatatattaacctgaattgaccgcgcggcgcgccggtcgcgccgaatacaact
gi|10 : aagcaaaacgacaaaaagcacattgagtcgactctgtttttgaaggggaggaggggggggggagggggggcaagcaaaaaaaatttaaaaaaactatggacattgttcttgtaattacctagactagacatgcattatagcttgaaaaataattgataaaatattctgccccccccccctccacttttaaaagtggggcgggggataccccactcacccgggctccttattaccgtacgcccatggcgtgttaaaatcaagttaagacgggaattgaggtttttctttcaagacatgatgtataatgatcaatctcatgcatgtaattactggcagtttatccgacatttcatccacaccttccaaatctgtcatgttaccggtcttgcatgttacacgattgattactatgagatttagagcacattattgaaaagaccggggggggggtggttaggttgacttctgtgcatgtaggcctaaagtaatatacttttaataatgcatatttaatttaatgaagtgatatgaaattattttgtaaacaATTTG-TCAT--AAAAGTGG-AG-A-CCA-CGG-TATGTAT--TC
gi|11 : aatgttgaaggagcgaaatgggggtttcacatgggccttggcgtgagtaagttagatatattgaaggaataaataacatgagcaatttgagtataaatttaaaagtacataatatttggggaaaaaatctcacggctgattgatcgatataagacactggctcatcctttaccttacatAT-CTTTATCAAA-TATAATAGCCAT-G-C-ATAGAATGT-----------------------------------------GAAAT--T-GCTGAGCT-TCGAACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTTTGT---CTGT-AAGAAAAGCAA---GCGATA-AA-GCTA--AAAGGTTAATTTAAAAAAAACCC-A-TCTTATTTGAGTGTTTATT-ACATTACCATAACAA-AA--TTATACT--G--A-------TAA------ATAGA-CGC-CGG-A-------CGCGCCAAAT-ACAACTtcgca
gi|12 : TACTAAA-TATAATAGCTAA-AAG-ATATAAAGTATCACTAGAATATTGAC--------------------TTT-AAAAAA-T-TCGGAGCC-TC-AAACGTT---------TGAT--------------------AA-AAG-ACACTT--------GAGAAAAACAAAAAGCGATG-AA-GCTG--AA----AGGTT-ACGAAAG-TCA-A-GATCGTTTGAATG--TAT-------------------A--TTCTACT--G--AAA---ACTGA-CATA-ATTGA-CGCGCGA-T-------CGTTCCGAAC-
gi|13 : AAAA--T-GCTGAGCCTCC-AACCTTTAGACTATTTTGATTTGGG--CTCGATATT--CGAATAAG-CTATTT---CCAT-AAAAAAAGCAA---GCGAT--AAAGCTA--AA----TGATT-GAAACAAATCG-AGGCTCCTTTGAGTGTTTATT--C-----CATAACAGCAAC-TTCTACT--GGAAAAAATA-TAACCATG-ATT--------GG-G-------TGCGCC-AATAACAA
gi|14 : -GATT----AGTA---TT-CATTATAGC-TTGAAAAA--TACTTT-GAC-------------------AA-a
gi|15 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtCACGCAAAA-AATTAAAAGGCA-CA-TAG----T------CA--C----TGATCT--G-----TTTT---------GA--AAGA--------GGG--GG--------CATTCTTA--AA--AA-A--------AATAAGGAGAA-AAGGC------------A-----C-AGAGAC-------A-C-CGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTtaagggggggggaggggggggggggggggggggcatagttttgcccccattttcaaaagtgggggagagggtgaattgcccacacacccttcccc
gi|16 : catgcaggataggcataggactgggacaaacttctaaacaatgtgaaaaaaA-----A--TC--AA-A--------AT-------AATAA---------------G-----C-GTAAAAAA----CA-C-TGT--T-C-TGTAACTA--CT---T-CACT----AGTAA--TT-CATTATAGC-TTGAAAAA--TAC-TT-GAC-------------------AATAGGAGGGGGACAAAAAC-ATAGT---------------------TTTGCCTCCTC--C--------------TAC-T-TTCAAAGGTGG------GGG--G-AT-TA------T-------CC---C-C-CCA--------C--CCGGCT-CC---------A-A--------CGCCCAT-G
gi|17 : ctgtaC--AA-A--------AA-------TA-AA---------------G-----G-ACAAAC-----------TGTG-T-C-TGTAAATA--CT---AAGACT----GATAA--TT-CATTACAGC-TTT-AAAA--TAC-TT-GAC-------------------AA-A-----------------A
gi|18 : aaaatgtgtataAAT-A-A-GTTCATATGGGTGTTTATC-AT-----CAGAGCA--AATTTTCTACT--G--AAATgataggggggggggcataacatcctttcatgttttgcccctcccttttcaagtgggggcaaatcccatgcccacg
gi|2 : attcaattagtaattttagcatacatttacataaataattgataaaattatgacagtaaattggtttgagacattggtggagggaaggtAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCAACA-T------T------AA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAC------CA-CATGT--T-C-TGTAATTA--CT---A-GACT----AGTAC--GG-CATTATAGC-TTGAAAAA--TAC-TTAGAT-------------------AA-A-----------------ATAGT---------------------TTTGCCCCCCC--CCCCCCCC--CCGT-CAC-T-TT-AAAAGTGGGG--C-GGG--G-A--TA------C-------TC---C-C-TCAC--C----C--CCGGTT-C----------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AG-CGGAGA-T--AGG-TTTTCTTACTAAGAACATTGCGGTC---TACTGAGCA-TGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATATC------TTGTCA-GT-T-TAATC--A-CATTTTC-ATC---ACAC-TCTTC-CA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTATCGAGATTTAGA-GCA-ATTA--TGAAAGAGCGGGGA-GGGGGGGGGGGGGGGGGGTAGT-T--GATTTCGGTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAA-AT-----AAACAGTTTAGGCAGAA-TACTTTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-AT-CAGCGTA--------------AC--------------------TTTGGAAAA--T-GCTGTGCT-CC-AACCTTT---------TGATT-GGGC-CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCT-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA--GCGCGG-G-------CGCGCCGAAT-ACAA-TAGcaaagtattgagagtactgt
gi|20 : ctaataAGCAA---GCGATA-AA-GCTA--AA----TGATT-AAACAAAATCT-A-GCTCGTTTGAGTGTTTATT-CC-----CATAACAA-AC--TTCTACT--G--AAAAATATTAACCATG-ATT---------G-G-------TGCGCCCAAT-ACAACTAG
gi|22 : TAGAC-------A-C-TGT--T-C-TGTAACTA--CG---A-GACA----AGTAA--TT-CATTATAGC-TTG
gi|23 : ct-AAAACCA--AA----CGGCT-AAGAAAA-TCA-A-GCTCATTTGAGTGTTTATT-AC-----CATAGCTG-AA--TTCTACT--G--AAAAACATTGTCCACA-ATTGA-AGCGCAG-A-------CGCGCCGAAT-ACTACTgcacttttttataataagggggggggaggggggcatagttacctggctccagtgtacgcccatg
gi|24 : c-T------T------GA--C----CTA-CTCTG-----TTTT---------GA--AGGG--------GGGTGGGGG------CA-----A--GC--AA-A--------AA-------AA-AACCATAATACAAACAAA-----C-ATGGAC-------A-C-TGT--T-C-ATTAATTA--CT---G-GACT----AGTAA--TG-CATTATAGC-
gi|25 : -A-----------------ATAGT---------------------TTTGCCCCCCCCTCCCCCCCC--CCG---AC-T-TT-CAAGGGGGG
gi|26 : gaagttgtaactgaaaaatactttacatacaacaggggtaggaggggggtggggtggcaaaatCCCCT--CCG--AACGT-TC-AAAGGTGGGT--G-GGG--G-A--GT------C-------CC---T-C-CC---------------GCT-CC---------C-A--------CGCCCAT-G
gi|27 : tgtaactggaaaaatactttaacaatacagtgggagggcgcaaatcaaag-A-----------------ATACT---------------------TTTGCCACCCC--CCCCCC------G--C-T-T-TT-AAAAGAGGGG------G--G-T--TA------C-------CC---C-C-CC-C--CTTTTC--CGGGCT-CC---------T-A--------CGTCCAT-G
gi|28 : gttacttgaccaaaaaaaaggggggggtGCAA--TT-CATTATAGC-TTGAAAAA--TAC-TT-GACGATTGGTGGGGGAAGGCAGAA-AC----------------ATAAT---------------------GTTGCTCCCCC--CCCCC
gi|29 : ------CA-----A--GC--AG-A--------AA-------GG-GGGC-------------A-----C-ATAGAC-------A-C-TGT--T-T-AGTAACTATACT---A-GACTGTCTAGTAA--TT-C------GT-TTGAAAAA---AC-TT-GAT-------------------tgataaatgaaattgccaccccggttc
gi|3 : AT-AAGT-TGGCAAGCAAAA-GAC-AAAAGCAA-CA-T------T------GAA-C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAT------CA-C-TGT--TTC-TGTAATTA--CT---A-GACT----AGTAC--GG-CATTATAGC-TTGAAAAAAATAC-TT-GAT-------------------AA-A-----------------ATAGT---------------------TTTGCCCCCCC--CCCCCCCCACCCGT-CAC-T-TT-AAAAGTGGGG--C-GGG--G-A--TA------C-------TC---C-C-TCAC--C----C--CCGGAT-TC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGCCGGGA--TA---G-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCA-TGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATATC------TTGTCAAGT-TGTAATC--ATCATTTTCTATC---ACAC-TCTTCGCA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTAT--GAAAGAGCGGGGAGGGGGGGGGGGGGGGGGGGTAGTAT--GATTTC-GTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGTTGAACTT-GGTA-----CCCGACTTGG--TA--TAGATCCC-T-ATTCATTTG-TCAT-G-AAAGTGG-AG-ACCAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAATTAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAGCGTA--------------AC--------------------TTT-GAAAA--T-GCTG---T-CC-AACC-TT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CGGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----T-AGT-ATAAAAAATCT-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAA-CATG-ATTGA-CGCGC-G-G-------CGCGCCGAAT-ACAACTtcgtgtaaaaacatctaaatcata
gi|30 : GACACGCAAAA------AAGGGCA-CA-T------A------GT--C------A-CT--GATTTATTTT---------GAAGAGGG--------GGG--GGGG------CA-----T--TCTTAA-G--------AA-------AA-GGC--------------A-----C-ACAGA-------CA-C-TGT--T-C-TGTAA
gi|31 : aatgtgacaaAAAGGGGGG----GGG--G-G--TG------CAGTTGTATC---C-C-ATATA-T----C--CCGGCT-CC---------T-A--------CGCCCAT-G
gi|33 : aaacattattttgccttcttacccctttctatgaggg-CA---AA-TATCTCAT--G-TACC----GGGGTCT------TGCATACA---CGTC------TTGATTTACTAT-GGGCTTTAGA-GCA-ATTATT-GAATGAG-GGGG--GGGGGGGGGG
gi|34 : -----------------ATACT---------------------ATTGCCCCCCC--CCCTT--------------T-TC-AAAAGTGGGG--A-GCA--A-T--TG------C-------CC---C-CACCCC--C----CTTCCGGCT-CC---------T-A--------CGCCCA
gi|36 : aaaacatactattAGTG-TGATCCGTATAAGGACCAAC--CTCATTCA-TGTGGGCATC--------GACA-GT-T-TT-TCAGA-CATTTTC-GGC---A-AT-CCTTT-Caga
gi|37 : ctttaa--CCCCCCCC--CC-----C-T-TT-CAAAAAGGGG--T-GGGTGG-G--TAATTGCCC-------CCGTGC-C-CCAC--C----C--CCGGCT-CC---------T-A--------CGCCCAT-G
gi|39 : ttgCCCC--CCCCACAC--ACA--CAC-T-TT-GGAAAGGGGG--G-GGG--G------------C-------CC---C-A-TCTC--C----C--TCGGCT-CC---------T-A--------CGCCCAT-Ga
gi|4 : T----AGTAA--TG-CATTATAGC-TTGAAAAA--TAA-TT-CAT-------------------AA-A-----------------ATATT---------------------TCTGCCCCCCC--CCTCCACT-----------T-TT-ACAAGTGGGGG-C-GGG--GGA--TA------C-------CC---C-C-TCAC--C----C--C-GGCT-CC---------T-ATACCGTGACGCCCAT-GCGTGTT--AATCAG--TA-AGACGGGAA-TG-AGG-TTTTCTTA------ACA------------------CG-TGAC--GTATAATGATCAATC-CTCATGCAATGT-GATAGT------TTGTCA-GT-T-T---TCGA-CATTT-C-ATC---ACAC-C-TTC-CA---AA-TCT-TCAT--G-TACC----GGG-TCT------TGCAATGTACACGTT------TTGATTTACTAT-GAGATT-AGA-GCA--TTATT-GAAAG--CGGGG--GGGTGGGGGTG-------TAGT-T--GACTTC-GTGTGCATGTA-GCCTA----A-AGTAG---------AA-TAATGCATA-----T---at
gi|4 : ACCACATAAT--GGCGC---TAAAT-ATGCATA-----TT--AAGA---CATT---GGGAAGGAGGATGT-TGACT---GTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGGAAG-A-CAG-C---TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATCC-TAC------GAATAT-----AAACAGTTTAGGCA-AA-TA------TATATAGCTTACCAGA-TATAATAGCCAT-A-G--TACAACGTA--------------AC--------------------TTT-GAAAA--TAGCTGA--C-CC-AACCTTT---------TGATT-GGG---TCGATATT--CGAATAAGCCTATTT---CCGT-AAGAAAAACAA---GCGAT--AAAGCTA--AA----TGA-T-GAAAAAAATCT-A--CTCGTTTGAGTGTTTA-T-AC-----CATA--AG-AA--TTC-ACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-GC------CGCGTCttaatttaataatgatatgaattatttgtaaccacataatggcgctaaatatgcatattaagacattgggaaggaggatgttgactgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctg
gi|40 : tagtaatgcattatagcttgaaaaataattcataaaatatttctgccccccccctccacttttacaagtgggggcgggggataccccctcaccccggctcctataccgtgacgcccatgcgtgttaatcagtaagacgggaatgaggttttcttaacacgtgacgtataatgatcaatcctcatgcaatgtgatagtttgtcagttttcgacatttcatcacaccttccaaatcttcatgtaccgggtcttgcaatgtacacgttttgatttactatgagattagagcattattgaaagcgggggggtgggggtgtagttgacttcgtgtgcatgtagcctaaagtagaataatgcatatttaatttaataatgatatgaattatttgtaCC--CCGTCCAC-T-TTCAAAAGTGGGGAGC-GGG--A-AA-TT------T-------CC---C-C-CCTC--C----C--CCGGGT-CC---------T-A--------CTCTCAT-Gtg
gi|42 : CCCCCCC--CC-----T-T-TT-GAAAGTGGGG------G--G-G--CG------C-------CC---C-C-CC----T----C--CCTGCT-CC---------T-A--------CGCCCAT-G
gi|44 : -------------------AA-G-----------------ATAGT---------------------TTTGCCCCTCC--CC-------------CAC-T-TTCAAAAGtt
gi|45 : ggggggggggggcaaaGGGG--G-GGG--C-AATTG------C-------CT---C-C-CCATGTC----C--CCGGCT-CC---------T-A--------CACCCAT-
gi|46 : gggAATATATTAACCATG-ATTGA-CGCGCGG-G------------CGAAT-ACAACTAG
gi|47 : GTGG-AG-A-CAG-CTA-TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATccaa
gi|48 : AGGCA-CA-TAGTCACT------GA--C----CT---T--------TTTT---------GA--AAGG--------GGG--GGGG------
gi|5 : AAATCAA-TGTGGCAAGCAGAA-CAA-AAAAGGCA-CACT------T------GA--A----CTA-CTCTG-----TTTTTGGACG---GG--GGGG--------GGG--GGGG------CA-----G--GC--AA-A--------AA-------GA-AA---------------AAAAGAC-ATAGAC-------A-C-TGT--T-C-TGTAAC-A--CT---A-GACT----AGTAA--TTGCAT-ATAGC-TTGAAAAAA-TAC-TTTGAT-------------------AA-A-----------------ATAGT---------------------TT-GCCCCCCC--CCCTTCCT--TC----AC-TCTT-AAAAGTGGGG--C-AGG--G-G--TG------C-------CC---G-C-CC---------C--CCGGCTTCC---------T-A--------CGCCCA--GC-TGTT--A-TCAA--TACAGACGGGAA-TGCAGG-TTTTCGT--TAAGA-CATG-TGG-TCTATACTGACAGATGAT--GTATAATGATCAAATTCTCATG---TGTAGATACCATGTACTTGTCA-GTCT-TAATCCGA-CACTTCC-ATCTCAGCAC-CTTGC-CA---AAATATGTCATATG-TACCA---GGGGTCTGTGCTGTACA-------CGTT------T-GATTTACTAT-GGGATTTAGAGGCA-ATTA-TTGAAAGA------------GAAGGGGGGGGGGGTAGT-TTGAACTTC-ATGTGCATGTAGGCCTA----A-AGTA----------AA-T-ATATATA-----T---g
gi|5 : GTTGGGCGC---TAA-T-ATGCATA-----TTAAAGGGACCCACCTGGGGGAAGGATTGGTT-GAAATT-GGTATGGATCCC--CCTGTT-GAAGTAAAT-AA-TAATTCATGT--TCAT-GAAAAtattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaacgttgggcgctaatatgcatattaaagggacccacctgggggaaggattggttgaaattggtatggatccccctgttgaagtaaataataattcatgttcatgaaaa
gi|50 : aaatcaatgtggcaagcagaacaaaaaaggcacacttgaactactctgtttttggacggggggggggggggcaggcaaaaagaaaaaaagacatagacactgttctgtaacactagactagtaattgcatatagcttgaaaaaatactttgataaaatagtttgccccccccccttccttcactcttaaaagtggggcaggggtgcccgccccccggcttcctacgcccagctgttatcaatacagacgggaatgcaggttttcgttaagacatgtggtctatactgacagatgatgtataatgatcaaattctcatgtgtagataccatgtacttgtcagtcttaatccgacacttccatctcagcaccttgccaaaatatgtcatatgtaccaggggtctgtgctgtacacgtttgatttactatgggatttagaggcaattattgaaagagaagggggggggggtagtttgaacttcatgtgcatgtaggcctaaagtaaatatatatattattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaac-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTT-ATTT
gi|6 : --GTATAATAATCTATTG-TCATATAGTGCAGATA-C------TGCCCA-GT-T-CA-TCTGA-AATTTT--ATC---TCAC-CCTTC-CATATAA-TGTACCAA--G-TACCAGCTAGGGTCT------TA----------------------------TAG-GAG---TATA-ACA------TTGAAAGAGCGAAT--GGGAGAGGAGGG
gi|6 : TA-----T---AAGA---CACT---AGGAAAGGATTCGG-G--TTT-AG-------CCTTATTTAGC--A--TA-------T-ATTT-TTTG-AAAT--AAAAGTGG-AG-A-CCA-CTG-TGTGTATCCTCGC-ATCT-AAACACGT--GATTTAT---TAGGGAAAAAAATACCAAACAAACAGTTAA---AGAG-TAA-ATAT-ATAT-CTTTATCAAA-TATGATAGCCAA-A-ATATACAAAGTA--------------ACATTGTATGGAGTTTGATGACTTT-GAAAAATT-GCTGATCC-TC-GAACTTTAATTC----TGATT-GGA--CTCGATATTTGTGGTTCAG-TTATTT---CCGT-cgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaaagtttgacggttgattattataagacactaggaaaggattcgggtttagccttatttagcatatattttttgaaataaaagtggagaccactgtgtgtatcctcgcatctaaacacgtgatttattagggaaaaaaataccaaacaaacagttaaagagtaaatatatatctttatcaaatatgatagccaaaatatacaaagtaacattgtatggagtttgatgactttgaaaaattgctgatcctcgaactttaattctgattggactcgatatttgtggttcagttatttccgtttataaaaaacgaatcaaat
gi|7 : gtataataatctattgtcatatagtgcagatactgcccagttcatctgaaattttatctcacccttccatataatgtaccaagtaccagctagggtcttataggagtataacattgaaagagcgaatgggagaggagggcgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaaagtttgacggttgattatA-------AA-AA---------------A-----------AC------CA-C-TGT--T-C-TGTAACTA--CTTTCA-GGCT----AGTAATGTT-CATTATAGCTTTG--AAA--TAC-TT-GAC-------------------AATAAGGAGGCGGACAAAAACATAGT---------------------TTTGCCCCTTT--CCTCC----------TAC-T-TTCAAAGGTGG------GGG--G-AT-TA------T-------CC---C-C-CCA--------C--CCGGCT-CC---------CAA--------CGCCCAT-Gttataaaaaacgaatcaaat
gi|8 : catatatagactgatttttaatgaggagggagcacacttctaaatgtggcaaagcaaccaaaaaaagggggggcacatgtagagcactttggttgtgtgtgtgttgtgtggtgtgcgtgtaaactgtaatcaaaatatagcgtA-A--------AA-------GC-AC---------------A-----T-ATAGAC------CTTC-TGTATT-T-TGTAACTA--CT---A-GAAT----AGTAA--TT-CATTATAGC-TCGAAGAA--TAC-TT-GA--------------------AA-G-----------------A-AGTGGAGGTTGGGGAAAAACATAATTTGCTCCCCC--TCC------------CAC-T-TTCAAAAGTGGGA--G-GGG--C-AATTG------C-------CA---C-C-ATGC--C----C--CCGGCT-CC---------C-A--------AATCCA
gi|9 : caagacactgatctcatttgaatgcgggggagtgggttctaaatgtgacaaacaaaacataggatAAT-AT-G-TAACAAGCAAAA-GGT-AAAAAAAA-AA-T------CCATAAAAA--CAGTGCTG--T--G-----TTTT---------GA--GGGG--------GGG--GGGGGACTTCCA-----AATGT--GATA--------AG-------CA-GAGGGGC----------A-----C-ATAGACACTGTTCA-C-TGT--T-C-TGTAACTA--CT---A-GACTGGCTAGTAA--TT-CGTTATAGC-TTGAAAAA--
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TCAATGCATGATTTAGATCCATTCTCATTGCATGTATATAATGAAGATACTGACCAGTTTAGCAAAAGTTCCAAGTATAATAAGTACCAGGGTCTTATACTGACAGTTATGTTGAAGGAGCTAGTAAAGGGGATGGGAGCTCTGG
Unaligned ( gi|21 ): CACCGAGTAATAAACAGGCAACTGAATGCTATGTATTATGAACAGACAAATGAATGTTTGTAATAAATAGACAAATATGTTTTATAAAAATATTGAATAATTCGTATTTCAGC
Unaligned ( gi|32 ): AGAAAAAAAGGGGGGAGGCAATAACTTACTTTTGCCCTCTCTTTTCAAAAAGGGGGGGGGGGATGCCTCCCGGTTCCTATGGACATGGAA
Unaligned ( gi|35 ): ATAGGGAGGGGGATTACTGGCTTTAAATGGGCCCAGGAGAAAATATTTTTTAATAACAATTGAGCGTAACTTATGATAATTGATAAA
Unaligned ( gi|38 ): CAATGAACATGCAGTGCAGATACAGCCCAATTTATCTGACAATTTATCTCGCCTTTCCGTGTATTGCAAGTATCA
Unaligned ( gi|41 ): TAATTTGTTTTGATTGGGGGGGGGGGGGGGGGGTTGGTAAAAAAAAAAAAAGACAGAG
Unaligned ( gi|43 ): GAGGTGGATGGACTTCTAATTATGCCCCACCCGGCTCCTACGCCCATGT
Unaligned ( gi|49 ): AGCCCCTTCCACCTTAATATTATTTATGTAGCTAAAA
Unaligned ( gi|51 ): CCCCCCCCCTTTGATAGTGGTATTTAGAGGG
Alignments
lowQualScore : 1 111 11111 444444444444444444444444444444444444 333333333 11111111 111111 11111111 11111111 1111111 44444444444444444444444 22222222 1111 4444444444444444444444444444444444444444444444444444444444444444444444 333333333333 111 1111 1111 222222222 11 11 111 111 555555555555555555555555 111 222222222 11 1 1111 111 1111 111111 3333333 111111 11 222 11 11 11 2222 1111111111 1 111111111 111 11111 1 111111 1111 11 222222 22222 2222222 666666666666666666666666666666666666 1 11 333333333 11 1 11111 1111111
lowQualScore : 0 777 22222 5 4 666666666666666666666666666666666666 000000000 66 66666666 66 111111 00000000 55 3 22222222 0000000 3 00000000000000000000000 33333333 2 2 66 2 2 77 555 2 1111 33 2 2 77 3 6 7777777777777777777777777777777777777777777777777777777777777777777777 33 999999999999 2 2 888 0 22 7777 7777 7777777 2 77777 000000000 33 2 888888888 2 88888888 2 11 0 11 8 5 88 222 8 666 333333333333333333333333 77 5 222 55 0 333333333 0 5 5 5 77 0 5 0 0 5 3333 5 5 000 5 3 77 5 7777 666666 0000000 666666 1 1 5 1 5 00 111 55 33 1 5 8 11 11 1111 5 4444444444 5 5 444444444 999 111 0 6 1 6 66666 0 111111 1 0000 6 5 00 5 5 5 5 0 5 66 5 5 5 9 8 333333 0 00000 3 9999999 3 6 5 5 777 888888888888888888888888888888888888 1 11 5 22 5 5 0 222222222 5 11 66 0 888 5 888 99 7 66 9999 0 4 0 55 4 44 00000 1 44 99 55 55 4 5 4 66 4 7777777 0 4
lowQualScore : . ... ..... . . .................................... ......... .. ........ .. ...... ........ .. . ........ ....... . ....................... ........ . . .. . . .. ... . .... .. . . .. . . ...................................................................... .. ............ . . ... . .. .... .... ....... . ..... ......... .. . ......... . ........ . .. . .. . . .. ... . ... ........................ .. . ... .. . ......... . . . . .. . . . . . .... . . ... . . .. . .... ...... ....... ...... . . . . . .. ... .. .. . . . .. .. .... . .......... . . ......... ... ... . . . . ..... . ...... . .... . . .. . . . . . . .. . . . . . ...... . ..... . ....... . . . . ... .................................... . .. . .. . . . ......... . .. .. . ... . ... .. . .. .... . . . .. . .. ..... . .. .. .. .. . . . .. . ....... . .
lowQualScore : 0 000 77777 0 4 222222222222222222222222222222222222 666666666 11 11111111 11 555555 66666666 00 3 11111111 0000000 1 77777777777777777777777 66666666 9 9 88 9 9 33 444 9 3333 44 5 7 33 3 2 6666666666666666666666666666666666666666666666666666666666666666666666 77 555555555555 2 2 111 5 99 8888 2222 2222222 2 88888 888888888 11 2 999999999 2 11111111 5 00 8 00 0 6 88 000 0 666 666666666666666666666666 99 0 333 00 1 000000000 3 7 7 7 11 1 7 1 1 7 9999 7 0 000 7 0 99 7 9999 444444 7777777 444444 4 4 7 4 7 77 777 00 66 0 0 0 00 22 3333 7 6666666666 0 0 333333333 888 777 3 7 7 7 77777 8 777777 0 0000 7 7 00 7 0 0 0 1 0 99 7 7 7 3 0 000000 8 00000 2 0000000 8 7 7 7 333 000000000000000000000000000000000000 4 99 0 99 0 0 1 555555555 0 99 99 0 888 0 888 66 3 11 4444 8 4 8 00 0 77 00000 3 77 55 55 55 7 0 0 55 0 0000000 1 4
consensus : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTGAAAAA--TAC-TT-GAC-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCC--CCCCCCCC--CC---CAC-T-TT---AAAAGTGG--GG--C-GGGG-A--TGC-------CCC-C-----CCAC--C----C--CCGGCT-CC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCG-TGAT--GTATAATGATCAATTTCTCATGCAATGTAGATATC------TTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-CA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTTGAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAA-TAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------AC--------------------TTT-GAAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
Reference ( family-189 ) : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTGAAAAA--TAC-TT-GAC-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCC--CCCCCCCC--CCG--CAC-T-TT---AAAAGTGG--GG--C-GGGG-A--TGC-------CCC-C-----CCAC--C----C--CCGGCT-CC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCG-TGAT--GTATAATGATCAATTTCTCATGCAATGTAGATATC------TTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-CA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTTGAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAA-TAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------AC--------------------TTT-GAAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
gi|1 : AAGCAAAACGAC-AAAAAGCA-CA-T------T------GAGTCGA--CT--CT--G-----TTTTTGAAGGGGAGG--AGGGGGGGGGGAGGG--GGGG------CA-----A--GC--AA-AAAAAATTTAA-------AA-AA---------------A-----CTATGGA-------CA-T-TGT--T-CTTGTAATTAC-CT---A-GACT----AGACA--TG-CATTATAGC-TTGAAAAA--TAA-TT-GAT-------------------AA-A-----------------ATA----T---------------------TCTGCCCCCCC--CCCCTCCA--C------T-T-TT---AAAAGTGG--GG--CGGGGG-A--TAC-------CCCAC-----TCA---C----C--CGGGCT-CCTTATTACCGT-A--------CGCCCATGGCGTGTTAAAATCAAGTTA-AGACGGGAATTG-AGGTTTTTCTTTC-AAGA---------------------CA-TGAT--GTATAATGATCAA--TCTCATGC-ATGTAATTA--------CTGGCA-GT-T-T-ATCCGA-CA-TTTC-ATC----CACACCTTC-CA---AA-TCTGTCAT--GTTACC------GGTCT------TGCA-------TGTTACACGATTGA-TTACTAT-GAGATTTAGA-GCACATTATTGAAAAGACCGGGG--GGGGGGTGGTTAG-------GT-T--GACTTC--TGTGCATGTAGGCCTA----A-AGTAATATACTTTTAA-TAATGCATA-----T---
gi|1 : CAAA-AATGGCGCGT---TAA-TTATGCATAAGTTTT---AAGAATT-------GGGAAGGGATGTAT-GAACTTTGGTA-----CCC-ACT--GTATA--TAGAT-CCCT-AG-CATTTGGTCATTGAAA--TGG-AGGA-CAGGCTGATGTATAT--TCGCCACTTTAAA-ACTTTTGATTTATCCATAT------AAATAT-----AAACAGTTCAGGCAAAA-------ATCATAG-CCTTATCAAAATATAATAGCCATTA-G-ATACAACTTA--------------AC--------------------TTTTGAAAA--T-GCTGAGCC-TC-A-CCTTT---------TGATT-GGGTTCTCGATATT--CGAATAAGGCTATTTGTTCCGTTAAAGAAAG--A---ACGAAATAAAGTTATAAA----TGATT-AAAAAAAATCTTA-GCTCGTTTGACTGTTTATTTAC-----CATAACAG-AA--TTCTACTTGA--AAATATATTAACC-TGAATTGACCGCGCGGCGCGCCGGTCGCGCCGAAT-ACAACTttaatttaatgaagtgatatgaaattattttgtaaacacaaaaatggcgcgttaattatgcataagttttaagaattgggaagggatgtatgaactttggtacccactgtatatagatccctagcatttggtcattgaaatggaggacaggctgatgtatattcgccactttaaaacttttgatttatccatataaatataaacagttcaggcaaaaatcatagccttatcaaaatataatagccattagatacaacttaacttttgaaaatgctgagcctcaccttttgattgggttctcgatattcgaataaggctatttgttccgttaaagaaagaacgaaataaagttataaatgattaaaaaaaatcttagctcgtttgactgtttatttaccataacagaattctacttgaaaatatattaacctgaattgaccgcgcggcgcgccggtcgcgccgaatacaact
gi|10 : aagcaaaacgacaaaaagcacattgagtcgactctgtttttgaaggggaggaggggggggggagggggggcaagcaaaaaaaatttaaaaaaactatggacattgttcttgtaattacctagactagacatgcattatagcttgaaaaataattgataaaatattctgccccccccccctccacttttaaaagtggggcgggggataccccactcacccgggctccttattaccgtacgcccatggcgtgttaaaatcaagttaagacgggaattgaggtttttctttcaagacatgatgtataatgatcaatctcatgcatgtaattactggcagtttatccgacatttcatccacaccttccaaatctgtcatgttaccggtcttgcatgttacacgattgattactatgagatttagagcacattattgaaaagaccggggggggggtggttaggttgacttctgtgcatgtaggcctaaagtaatatacttttaataatgcatatttaatttaatgaagtgatatgaaattattttgtaaacaATTTG-TCAT--AAAAGTGG-AG-A-CCA-CGG-TATGTAT--TC
gi|11 : aatgttgaaggagcgaaatgggggtttcacatgggccttggcgtgagtaagttagatatattgaaggaataaataacatgagcaatttgagtataaatttaaaagtacataatatttggggaaaaaatctcacggctgattgatcgatataagacactggctcatcctttaccttacatAT-CTTTATCAAA-TATAATAGCCAT-G-C-ATAGAATGT-----------------------------------------GAAAT--T-GCTGAGCT-TCGAACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTTTGT---CTGT-AAGAAAAGCAA---GCGATA-AA-GCTA--AAAGGTTAATTTAAAAAAAACCC-A-TCTTATTTGAGTGTTTATT-ACATTACCATAACAA-AA--TTATACT--G--A-------TAA------ATAGA-CGC-CGG-A-------CGCGCCAAAT-ACAACTtcgca
gi|12 : TACTAAA-TATAATAGCTAA-AAG-ATATAAAGTATCACTAGAATATTGAC--------------------TTT-AAAAAA-T-TCGGAGCC-TC-AAACGTT---------TGAT--------------------AA-AAG-ACACTT--------GAGAAAAACAAAAAGCGATG-AA-GCTG--AA----AGGTT-ACGAAAG-TCA-A-GATCGTTTGAATG--TAT-------------------A--TTCTACT--G--AAA---ACTGA-CATA-ATTGA-CGCGCGA-T-------CGTTCCGAAC-
gi|13 : AAAA--T-GCTGAGCCTCC-AACCTTTAGACTATTTTGATTTGGG--CTCGATATT--CGAATAAG-CTATTT---CCAT-AAAAAAAGCAA---GCGAT--AAAGCTA--AA----TGATT-GAAACAAATCG-AGGCTCCTTTGAGTGTTTATT--C-----CATAACAGCAAC-TTCTACT--GGAAAAAATA-TAACCATG-ATT--------GG-G-------TGCGCC-AATAACAA
gi|14 : -GATT----AGTA---TT-CATTATAGC-TTGAAAAA--TACTTT-GAC-------------------AA-a
gi|15 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtCACGCAAAA-AATTAAAAGGCA-CA-TAG----T------CA--C----TGATCT--G-----TTTT---------GA--AAGA--------GGG--GG--------CATTCTTA--AA--AA-A--------AATAAGGAGAA-AAGGC------------A-----C-AGAGAC-------A-C-CGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTtaagggggggggaggggggggggggggggggggcatagttttgcccccattttcaaaagtgggggagagggtgaattgcccacacacccttcccc
gi|16 : catgcaggataggcataggactgggacaaacttctaaacaatgtgaaaaaaA-----A--TC--AA-A--------AT-------AATAA---------------G-----C-GTAAAAAA----CA-C-TGT--T-C-TGTAACTA--CT---T-CACT----AGTAA--TT-CATTATAGC-TTGAAAAA--TAC-TT-GAC-------------------AATAGGAGGGGGACAAAAAC-ATA---GT---------------------TTTGCCTCCTC--C--------------TAC-T-TTC--AAAGGTGG--------GGGG-AT-TAT-------CCC-C-----CCA--------C--CCGGCT-CC---------A-A--------CGCCCAT-G
gi|17 : ctgtaC--AA-A--------AA-------TA-AA---------------G-----G-ACAAAC-----------TGTG-T-C-TGTAAATA--CT---AAGACT----GATAA--TT-CATTACAGC-TTT-AAAA--TAC-TT-GAC-------------------AA-A-----------------A
gi|18 : aaaatgtgtataAAT-A-A-GTTCATATGGGTGTTTATC-AT-----CAGAGCA--AATTTTCTACT--G--AAATgataggggggggggcataacatcctttcatgttttgcccctcccttttcaagtgggggcaaatcccatgcccacg
gi|2 : attcaattagtaattttagcatacatttacataaataattgataaaattatgacagtaaattggtttgagacattggtggagggaaggtAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCAACA-T------T------AA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAC------CA-CATGT--T-C-TGTAATTA--CT---A-GACT----AGTAC--GG-CATTATAGC-TTGAAAAA--TAC-TTAGAT-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCC--CCCCCCCC--CCGT-CAC-T-TT---AAAAGTGG--GG--C-GGGG-A--TAC-------TCC-C-----TCAC--C----C--CCGGTT-C----------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AG-CGGAGA-T--AGG-TTTTCTTACTAAGAACATTGCGGTC---TACTGAGCA-TGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATATC------TTGTCA-GT-T-TAATC--A-CATTTTC-ATC---ACAC-TCTTC-CA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTATCGAGATTTAGA-GCA-ATTA--TGAAAGAGCGGGGA-GGGGGGGGGGGGGGGGGGTAGT-T--GATTTCGGTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAA-AT-----AAACAGTTTAGGCAGAA-TACTTTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-AT-CAGCGTA--------------AC--------------------TTTGGAAAA--T-GCTGTGCT-CC-AACCTTT---------TGATT-GGGC-CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCT-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA--GCGCGG-G-------CGCGCCGAAT-ACAA-TAGcaaagtattgagagtactgt
gi|20 : ctaataAGCAA---GCGATA-AA-GCTA--AA----TGATT-AAACAAAATCT-A-GCTCGTTTGAGTGTTTATT-CC-----CATAACAA-AC--TTCTACT--G--AAAAATATTAACCATG-ATT---------G-G-------TGCGCCCAAT-ACAACTAG
gi|22 : TAGAC-------A-C-TGT--T-C-TGTAACTA--CG---A-GACA----AGTAA--TT-CATTATAGC-TTG
gi|23 : ct-AAAACCA--AA----CGGCT-AAGAAAA-TCA-A-GCTCATTTGAGTGTTTATT-AC-----CATAGCTG-AA--TTCTACT--G--AAAAACATTGTCCACA-ATTGA-AGCGCAG-A-------CGCGCCGAAT-ACTACTgcacttttttataataagggggggggaggggggcatagttacctggctccagtgtacgcccatg
gi|24 : c-T------T------GA--C----CTA-CTCTG-----TTTT---------GA--AGGG--------GGGTGGGGG------CA-----A--GC--AA-A--------AA-------AA-AACCATAATACAAACAAA-----C-ATGGAC-------A-C-TGT--T-C-ATTAATTA--CT---G-GACT----AGTAA--TG-CATTATAGC-
gi|25 : T-GGC-------------------AA-A-----------------ATAATAGT---------------------TTTGCCCCCCCCTCCCCCCCC--CCG---AC-T-TT---CAAGGGGG--G
gi|26 : gaagttgtaactgaaaaatactttacatacaacaggggtaggaggggggtggggCCCCT--CCG--AACGT-TC---AAAGGTGG--GT--G-GGGG-A--GTC-------CCT-C-----CC---------------GCT-CC---------C-A--------CGCCCAT-G
gi|27 : tgtaactggaaaaatactttaacaatacagtgggagggcgcaaatcaaag-A-----------------ATA---CT---------------------TTTGCCACCCC--CCCCCC------G--C-T-T-TT---AAAAGAGG--GG------GG-T--TAC-------CCC-C-----CC-C--CTTTTC--CGGGCT-CC---------T-A--------CGTCCAT-G
gi|28 : gttacttgaccaaaaaaaaggggggggtGCAA--TT-CATTATAGC-TTGAAAAA--TAC-TT-GACGATTGGTGGGGGAAGGCAGAA-AC----------------ATA---AT---------------------GTTGCTCCCCC--CCCCC
gi|29 : ------CA-----A--GC--AG-A--------AA-------GG-GGGC-------------A-----C-ATAGAC-------A-C-TGT--T-T-AGTAACTATACT---A-GACTGTCTAGTAA--TT-C------GT-TTGAAAAA---AC-TT-GAtgataaatgaaattgccaccccggttc
gi|3 : AT-AAGT-TGGCAAGCAAAA-GAC-AAAAGCAA-CA-T------T------GAA-C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAT------CA-C-TGT--TTC-TGTAATTA--CT---A-GACT----AGTAC--GG-CATTATAGC-TTGAAAAAAATAC-TT-GAT-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCC--CCCCCCCCACCCGT-CAC-T-TT---AAAAGTGG--GG--C-GGGG-A--TAC-------TCC-C-----TCAC--C----C--CCGGAT-TC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGCCGGGA--TA---G-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCA-TGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATATC------TTGTCAAGT-TGTAATC--ATCATTTTCTATC---ACAC-TCTTCGCA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTAT--GAAAGAGCGGGGAGGGGGGGGGGGGGGGGGGGTAGTAT--GATTTC-GTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGTTGAACTT-GGTA-----CCCGACTTGG--TA--TAGATCCC-T-ATTCATTTG-TCAT-G-AAAGTGG-AG-ACCAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAATTAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAGCGTA--------------AC--------------------TTT-GAAAA--T-GCTG---T-CC-AACC-TT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CGGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----T-AGT-ATAAAAAATCT-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAA-CATG-ATTGA-CGCGC-G-G-------CGCGCCGAAT-ACAACTttcgtgtaaaaacatctaaatcata
gi|30 : GACACGCAAAA------AAGGGCA-CA-T------A------GT--C------A-CT--GATTTATTTT---------GAAGAGGG--------GGG--GGGG------CA-----T--TCTTAA-G--------AA-------AA-GGC--------------A-----C-ACAGA-------CA-C-TGT--T-C-TGTAA
gi|31 : aatgtgacaaAAAGGGG--GG----GGGG-G--TGCAGTTGTATCC-C-----ATATA-T----C--CCGGCT-CC---------T-A--------CGCCCAT-G
gi|32 : aaacattattttgccttcttacccctttctatgagggC--CCT--CTC-T-TTTCAAAAAGGGG--GG--G-GGGG-A--TGC--------------------C--T----C--CCGGTT-CC---------T-A--------TGGACAT-G
gi|33 : agaaaaaaaggggggaggcaataacttacttttg-CA---AA-TATCTCAT--G-TACC----GGGGTCT------TGCATACA---CGTC------TTGATTTACTAT-GGGCTTTAGA-GCA-ATTATT-GAATGAG-GGGG--GGGGGGGGGGgaa
gi|34 : -----------------ATA---CT---------------------ATTGCCCCCCC--CCCTT--------------T-TC---AAAAGTGG--GG--A-GCAA-T--TGC-------CCC-CA----CCCC--C----CTTCCGGCT-CC---------T-A--------CGCCCA
gi|36 : aaaacatactattAGTG-TGATCCGTATAAGGACCAAC--CTCATTCA-TGTGGGCATC--------GACA-GT-T-TT-TCAGA-CATTTTC-GGC---A-AT-CCTTT-Caga
gi|37 : ctttaa--CCCCCCCC--CC-----C-T-TTCA-AAAAGGGGTGGG--T-GGGT-AATTGC-------CCC-CGTGCCCCAC--C----C--CCGGCT-CC---------T-A--------CGCCCAT-G
gi|39 : ttgCCCC--CCCCACAC--ACA--CAC-T-TT---GGAAA-GG--GG--G-GGGG-----GC-------CCC-A-----TCTC--C----C--TCGGCT-CC---------T-A--------CGCCCAT-Ga
gi|4 : T----AGTAA--TG-CATTATAGC-TTGAAAAA--TAA-TT-CAT-------------------AA-A-----------------ATA---TT---------------------TCTGCCCCCCC--CCTCCACT-----------T-TT---ACAAGTGG--GGG-C-GGGGGA--TAC-------CCC-C-----TCAC--C----C--C-GGCT-CC---------T-ATACCGTGACGCCCAT-GCGTGTT--AATCAG--TA-AGACGGGAA-TG-AGG-TTTTCTTA------ACA------------------CG-TGAC--GTATAATGATCAATC-CTCATGCAATGT-GATAGT------TTGTCA-GT-T-T---TCGA-CATTT-C-ATC---ACAC-C-TTC-CA---AA-TCT-TCAT--G-TACC----GGG-TCT------TGCAATGTACACGTT------TTGATTTACTAT-GAGATT-AGA-GCA--TTATT-GAAAG--CGGGG--GGGTGGGGGTG-------TAGT-T--GACTTC-GTGTGCATGTA-GCCTA----A-AGTAG---------AA-TAATGCATA-----T---at
gi|4 : ACCACATAAT--GGCGC---TAAAT-ATGCATA-----TT--AAGA---CATT---GGGAAGGAGGATGT-TGACT---GTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGGAAG-A-CAG-C---TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATCC-TAC------GAATAT-----AAACAGTTTAGGCA-AA-TA------TATATAGCTTACCAGA-TATAATAGCCAT-A-G--TACAACGTA--------------AC--------------------TTT-GAAAA--TAGCTGA--C-CC-AACCTTT---------TGATT-GGG---TCGATATT--CGAATAAGCCTATTT---CCGT-AAGAAAAACAA---GCGAT--AAAGCTA--AA----TGA-T-GAAAAAAATCT-A--CTCGTTTGAGTGTTTA-T-AC-----CATA--AG-AA--TTC-ACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-GC------CGCGTCttaatttaataatgatatgaattatttgtaaccacataatggcgctaaatatgcatattaagacattgggaaggaggatgttgactgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctg
gi|40 : tagtaatgcattatagcttgaaaaataattcataaaatatttctgccccccccctccacttttacaagtgggggcgggggataccccctcaccccggctcctataccgtgacgcccatgcgtgttaatcagtaagacgggaatgaggttttcttaacacgtgacgtataatgatcaatcctcatgcaatgtgatagtttgtcagttttcgacatttcatcacaccttccaaatcttcatgtaccgggtcttgcaatgtacacgttttgatttactatgagattagagcattattgaaagcgggggggtgggggtgtagttgacttcgtgtgcatgtagcctaaagtagaataatgcatatttaatttaataatgatatgaattatttgtaCC--CCGTCCAC-T-TTC--AAAAGTGG--GGAGC-GGGA-AA-TTT-------CCC-C-----CCTC--C----C--CCGGGT-CC---------T-A--------CTCTCAT-Gtg
gi|42 : CCCCCCC--CC-----T-T-TT---GAAAGTGG--GG------GG-G--CGC-------CCC-C-----CC----T----C--CCTGCT-CC---------T-A--------CGCCCAT-G
gi|44 : -------------------AA-G-----------------ATA---GT---------------------TTTGCCCCTCC--CC-------------CAC-T-TTC--AAAAGtt
gi|45 : ggggggggggggcaaaGG--GG--G-GGGC-AATTGC-------CTC-C-----CCATGTC----C--CCGGCT-CC---------T-A--------CACCCAT-
gi|46 : gggAATATATTAACCATG-ATTGA-CGCGCGG-G------------CGAAT-ACAACTAG
gi|47 : GTGG-AG-A-CAG-CTA-TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATccaa
gi|48 : AGGCA-CA-TAGTCACT------GA--C----CT---T--------TTTT---------GA--AAGG--------GGG--GGGG------
gi|5 : AAATCAA-TGTGGCAAGCAGAA-CAA-AAAAGGCA-CACT------T------GA--A----CTA-CTCTG-----TTTTTGGACG---GG--GGGG--------GGG--GGGG------CA-----G--GC--AA-A--------AA-------GA-AA---------------AAAAGAC-ATAGAC-------A-C-TGT--T-C-TGTAAC-A--CT---A-GACT----AGTAA--TTGCAT-ATAGC-TTGAAAAAA-TAC-TTTGAT-------------------AA-A-----------------ATA---GT---------------------TT-GCCCCCCC--CCCTTCCT--TC----AC-TCTT---AAAAGTGG--GG--C-AGGG-G--TGC-------CCG-C-----CC---------C--CCGGCTTCC---------T-A--------CGCCCA--GC-TGTT--A-TCAA--TACAGACGGGAA-TGCAGG-TTTTCGT--TAAGA-CATG-TGG-TCTATACTGACAGATGAT--GTATAATGATCAAATTCTCATG---TGTAGATACCATGTACTTGTCA-GTCT-TAATCCGA-CACTTCC-ATCTCAGCAC-CTTGC-CA---AAATATGTCATATG-TACCA---GGGGTCTGTGCTGTACA-------CGTT------T-GATTTACTAT-GGGATTTAGAGGCA-ATTA-TTGAAAGA------------GAAGGGGGGGGGGGTAGT-TTGAACTTC-ATGTGCATGTAGGCCTA----A-AGTA----------AA-T-ATATATA-----T---g
gi|5 : GTTGGGCGC---TAA-T-ATGCATA-----TTAAAGGGACCCACCTGGGGGAAGGATTGGTT-GAAATT-GGTATGGATCCC--CCTGTT-GAAGTAAAT-AA-TAATTCATGT--TCAT-GAAAAtattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaacgttgggcgctaatatgcatattaaagggacccacctgggggaaggattggttgaaattggtatggatccccctgttgaagtaaataataattcatgttcatgaaaa
gi|50 : aaatcaatgtggcaagcagaacaaaaaaggcacacttgaactactctgtttttggacggggggggggggggcaggcaaaaagaaaaaaagacatagacactgttctgtaacactagactagtaattgcatatagcttgaaaaaatactttgataaaatagtttgccccccccccttccttcactcttaaaagtggggcaggggtgcccgccccccggcttcctacgcccagctgttatcaatacagacgggaatgcaggttttcgttaagacatgtggtctatactgacagatgatgtataatgatcaaattctcatgtgtagataccatgtacttgtcagtcttaatccgacacttccatctcagcaccttgccaaaatatgtcatatgtaccaggggtctgtgctgtacacgtttgatttactatgggatttagaggcaattattgaaagagaagggggggggggtagtttgaacttcatgtgcatgtaggcctaaagtaaatatatatattattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaac-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTT-ATTT
gi|6 : --GTATAATAATCTATTG-TCATATAGTGCAGATA-C------TGCCCA-GT-T-CA-TCTGA-AATTTT--ATC---TCAC-CCTTC-CATATAA-TGTACCAA--G-TACCAGCTAGGGTCT------TA----------------------------TAG-GAG---TATA-ACA------TTGAAAGAGCGAAT--GGGAGAGGAGGG
gi|6 : TA-----T---AAGA---CACT---AGGAAAGGATTCGG-G--TTT-AG-------CCTTATTTAGC--A--TA-------T-ATTT-TTTG-AAAT--AAAAGTGG-AG-A-CCA-CTG-TGTGTATCCTCGC-ATCT-AAACACGT--GATTTAT---TAGGGAAAAAAATACCAAACAAACAGTTAA---AGAG-TAA-ATAT-ATAT-CTTTATCAAA-TATGATAGCCAA-A-ATATACAAAGTA--------------ACATTGTATGGAGTTTGATGACTTT-GAAAAATT-GCTGATCC-TC-GAACTTTAATTC----TGATT-GGA--CTCGATATTTGTGGTTCAG-TTATTT---CCGT-cgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaaagtttgacggttgattattataagacactaggaaaggattcgggtttagccttatttagcatatattttttgaaataaaagtggagaccactgtgtgtatcctcgcatctaaacacgtgatttattagggaaaaaaataccaaacaaacagttaaagagtaaatatatatctttatcaaatatgatagccaaaatatacaaagtaacattgtatggagtttgatgactttgaaaaattgctgatcctcgaactttaattctgattggactcgatatttgtggttcagttatttccgtttataaaaaacgaatcaaat
gi|7 : gtataataatctattgtcatatagtgcagatactgcccagttcatctgaaattttatctcacccttccatataatgtaccaagtaccagctagggtcttataggagtataacattgaaagagcgaatgggagaggagggcgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaaagtttgacggttgattatA-------AA-AA---------------A-----------AC------CA-C-TGT--T-C-TGTAACTA--CTTTCA-GGCT----AGTAATGTT-CATTATAGCTTTG--AAA--TAC-TT-GAC-------------------AATAAGGAGGCGGACAAAAACATA---GT---------------------TTTGCCCCTTT--CCTCC----------TAC-T-TTC--AAAGGTGG--------GGGG-AT-TAT-------CCC-C-----CCA--------C--CCGGCT-CC---------CAA--------CGCCCAT-Gttataaaaaacgaatcaaat
gi|8 : catatatagactgatttttaatgaggagggagcacacttctaaatgtggcaaagcaaccaaaaaaagggggggcacatgtagagcactttggttgtgtgtgtgttgtgtggtgtgcgtgtaaactgtaatcaaaatatagcgtA-A--------AA-------GC-AC---------------A-----T-ATAGAC------CTTC-TGTATT-T-TGTAACTA--CT---A-GAAT----AGTAA--TT-CATTATAGC-TCGAAGAA--TAC-TT-GA--------------------AA-G-----------------A-A---GTGGAGGTTGGGGAAAAACATAATTTGCTCCCCC--TCC------------CAC-T-TTC--AAAAGTGG--GA--G-GGGC-AATTGC-------CAC-C-----ATGC--C----C--CCGGCT-CC---------C-A--------AATCCA
gi|9 : caagacactgatctcatttgaatgcgggggagtgggttctaaatgtgacaaacaaaacataggatAAT-AT-G-TAACAAGCAAAA-GGT-AAAAAAAA-AA-T------CCATAAAAA--CAGTGCTG--T--G-----TTTT---------GA--GGGG--------GGG--GGGGGACTTCCA-----AATGT--GATA--------AG-------CA-GAGGGGC----------A-----C-ATAGACACTGTTCA-C-TGT--T-C-TGTAACTA--CT---A-GACTGGCTAGTAA--TT-CGTTATAGC-TTGAAAAA--
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TCAATGCATGATTTAGATCCATTCTCATTGCATGTATATAATGAAGATACTGACCAGTTTAGCAAAAGTTCCAAGTATAATAAGTACCAGGGTCTTATACTGACAGTTATGTTGAAGGAGCTAGTAAAGGGGATGGGAGCTCTGG
Unaligned ( gi|21 ): CACCGAGTAATAAACAGGCAACTGAATGCTATGTATTATGAACAGACAAATGAATGTTTGTAATAAATAGACAAATATGTTTTATAAAAATATTGAATAATTCGTATTTCAGC
Unaligned ( gi|35 ): ATAGGGAGGGGGATTACTGGCTTTAAATGGGCCCAGGAGAAAATATTTTTTAATAACAATTGAGCGTAACTTATGATAATTGATAAA
Unaligned ( gi|38 ): CAATGAACATGCAGTGCAGATACAGCCCAATTTATCTGACAATTTATCTCGCCTTTCCGTGTATTGCAAGTATCA
Unaligned ( gi|41 ): TAATTTGTTTTGATTGGGGGGGGGGGGGGGGGGTTGGTAAAAAAAAAAAAAGACAGAG
Unaligned ( gi|43 ): GAGGTGGATGGACTTCTAATTATGCCCCACCCGGCTCCTACGCCCATGT
Unaligned ( gi|49 ): AGCCCCTTCCACCTTAATATTATTTATGTAGCTAAAA
Unaligned ( gi|51 ): CCCCCCCCCTTTGATAGTGGTATTTAGAGGG
Alignments
lowQualScore : 1 111 11111 444444444444444444444444444444444444 333333333 11111111 111111 11111111 11111111 1111111 44444444444444444444444 22222222 1111 5555555555555555555555555555555555555555555555555555555555555555555555 222 1111 22222 111111111 11 11 111 111 555555555555555555555555 111 222222222 11 1 1111 111 1111 111111 3333333 111111 11 222 11 11 11 2222 1111111111 1 111111111 111 11111 1 111111 1111 11 222222 22222 2222222 666666666666666666666666666666666666 1 11 333333333 11 1 11111 1111111
lowQualScore : 0 777 22222 5 4 666666666666666666666666666666666666 000000000 66 66666666 66 111111 00000000 55 3 22222222 0000000 3 00000000000000000000000 33333333 2 2 66 2 2 77 555 2 1111 33 2 2 77 3 6 2222222222222222222222222222222222222222222222222222222222222222222222 6 22 88888 2 2 111 0 22 333 5555 2 00000 6666666 2 77777 777777777 22 2 888888888 2 88888888 2 11 0 11 8 5 88 222 8 666 333333333333333333333333 77 5 222 55 0 333333333 0 5 5 5 77 0 5 0 0 5 3333 5 5 000 5 3 77 5 7777 666666 0000000 666666 1 1 5 1 5 00 111 55 33 1 5 8 11 11 1111 5 4444444444 5 5 444444444 999 111 0 6 1 6 66666 0 111111 1 0000 6 5 00 5 5 5 5 0 5 66 5 5 5 9 8 333333 0 00000 3 9999999 3 6 5 5 777 888888888888888888888888888888888888 1 11 5 22 5 5 0 222222222 5 11 66 0 888 5 888 99 7 66 9999 0 4 0 55 4 44 00000 1 44 99 55 55 4 5 4 66 4 7777777 0 4
lowQualScore : . ... ..... . . .................................... ......... .. ........ .. ...... ........ .. . ........ ....... . ....................... ........ . . .. . . .. ... . .... .. . . .. . . ...................................................................... . .. ..... . . ... . .. ... .... . ..... ....... . ..... ......... .. . ......... . ........ . .. . .. . . .. ... . ... ........................ .. . ... .. . ......... . . . . .. . . . . . .... . . ... . . .. . .... ...... ....... ...... . . . . . .. ... .. .. . . . .. .. .... . .......... . . ......... ... ... . . . . ..... . ...... . .... . . .. . . . . . . .. . . . . . ...... . ..... . ....... . . . . ... .................................... . .. . .. . . . ......... . .. .. . ... . ... .. . .. .... . . . .. . .. ..... . .. .. .. .. . . . .. . ....... . .
lowQualScore : 0 000 77777 0 4 222222222222222222222222222222222222 666666666 11 11111111 11 555555 66666666 00 3 11111111 0000000 1 77777777777777777777777 66666666 9 9 88 9 9 33 444 9 3333 44 5 7 33 3 2 6666666666666666666666666666666666666666666666666666666666666666666666 7 88 99999 0 0 000 8 66 333 0000 0 00000 5555555 0 00000 000000000 88 2 999999999 2 11111111 5 00 8 00 0 6 88 000 0 666 666666666666666666666666 99 0 333 00 1 000000000 3 7 7 7 11 1 7 1 1 7 9999 7 0 000 7 0 99 7 9999 444444 7777777 444444 4 4 7 4 7 77 777 00 66 0 0 0 00 22 3333 7 6666666666 0 0 333333333 888 777 3 7 7 7 77777 8 777777 0 0000 7 7 00 7 0 0 0 1 0 99 7 7 7 3 0 000000 8 00000 2 0000000 8 7 7 7 333 000000000000000000000000000000000000 4 99 0 99 0 0 1 555555555 0 99 99 0 888 0 888 66 3 11 4444 8 4 8 00 0 77 00000 3 77 55 55 55 7 0 0 55 0 0000000 1 4
consensus : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTGAAAAA--TAC-TT-GAC-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CC--C--AC-T-TTC--AAAAGTGG--G---G--C-GGG-G--A--TGC-------CCC-C-----CCAC--C----C--CCGGCT-CC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCG-TGAT--GTATAATGATCAATTTCTCATGCAATGTAGATATC------TTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-CA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTTGAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAA-TAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------AC--------------------TTT-GAAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
Reference ( family-189 ) : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTGAAAAA--TAC-TT-GAC-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CC--C--AC-T-TT---AAAAGTGG--G---G--C-GGG-G--A--TGC-------CCC-C-----CCAC--C----C--CCGGCT-CC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCG-TGAT--GTATAATGATCAATTTCTCATGCAATGTAGATATC------TTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-CA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTTGAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAA-TAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------AC--------------------TTT-GAAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
gi|1 : AAGCAAAACGAC-AAAAAGCA-CA-T------T------GAGTCGA--CT--CT--G-----TTTTTGAAGGGGAGG--AGGGGGGGGGGAGGG--GGGG------CA-----A--GC--AA-AAAAAATTTAA-------AA-AA---------------A-----CTATGGA-------CA-T-TGT--T-CTTGTAATTAC-CT---A-GACT----AGACA--TG-CATTATAGC-TTGAAAAA--TAA-TT-GAT-------------------AA-A-----------------ATA----T---------------------TCTGCCCCCCCCCCCTCCA--C-------T-T-TT---AAAAGTGG--G---G--CGGGG-G--A--TAC-------CCCAC-----TCA---C----C--CGGGCT-CCTTATTACCGT-A--------CGCCCATGGCGTGTTAAAATCAAGTTA-AGACGGGAATTG-AGGTTTTTCTTTC-AAGA---------------------CA-TGAT--GTATAATGATCAA--TCTCATGC-ATGTAATTA--------CTGGCA-GT-T-T-ATCCGA-CA-TTTC-ATC----CACACCTTC-CA---AA-TCTGTCAT--GTTACC------GGTCT------TGCA-------TGTTACACGATTGA-TTACTAT-GAGATTTAGA-GCACATTATTGAAAAGACCGGGG--GGGGGGTGGTTAG-------GT-T--GACTTC--TGTGCATGTAGGCCTA----A-AGTAATATACTTTTAA-TAATGCATA-----T---
gi|1 : CAAA-AATGGCGCGT---TAA-TTATGCATAAGTTTT---AAGAATT-------GGGAAGGGATGTAT-GAACTTTGGTA-----CCC-ACT--GTATA--TAGAT-CCCT-AG-CATTTGGTCATTGAAA--TGG-AGGA-CAGGCTGATGTATAT--TCGCCACTTTAAA-ACTTTTGATTTATCCATAT------AAATAT-----AAACAGTTCAGGCAAAA-------ATCATAG-CCTTATCAAAATATAATAGCCATTA-G-ATACAACTTA--------------AC--------------------TTTTGAAAA--T-GCTGAGCC-TC-A-CCTTT---------TGATT-GGGTTCTCGATATT--CGAATAAGGCTATTTGTTCCGTTAAAGAAAG--A---ACGAAATAAAGTTATAAA----TGATT-AAAAAAAATCTTA-GCTCGTTTGACTGTTTATTTAC-----CATAACAG-AA--TTCTACTTGA--AAATATATTAACC-TGAATTGACCGCGCGGCGCGCCGGTCGCGCCGAAT-ACAACTttaatttaatgaagtgatatgaaattattttgtaaacacaaaaatggcgcgttaattatgcataagttttaagaattgggaagggatgtatgaactttggtacccactgtatatagatccctagcatttggtcattgaaatggaggacaggctgatgtatattcgccactttaaaacttttgatttatccatataaatataaacagttcaggcaaaaatcatagccttatcaaaatataatagccattagatacaacttaacttttgaaaatgctgagcctcaccttttgattgggttctcgatattcgaataaggctatttgttccgttaaagaaagaacgaaataaagttataaatgattaaaaaaaatcttagctcgtttgactgtttatttaccataacagaattctacttgaaaatatattaacctgaattgaccgcgcggcgcgccggtcgcgccgaatacaact
gi|10 : aagcaaaacgacaaaaagcacattgagtcgactctgtttttgaaggggaggaggggggggggagggggggcaagcaaaaaaaatttaaaaaaactatggacattgttcttgtaattacctagactagacatgcattatagcttgaaaaataattgataaaatattctgccccccccccctccacttttaaaagtggggcgggggataccccactcacccgggctccttattaccgtacgcccatggcgtgttaaaatcaagttaagacgggaattgaggtttttctttcaagacatgatgtataatgatcaatctcatgcatgtaattactggcagtttatccgacatttcatccacaccttccaaatctgtcatgttaccggtcttgcatgttacacgattgattactatgagatttagagcacattattgaaaagaccggggggggggtggttaggttgacttctgtgcatgtaggcctaaagtaatatacttttaataatgcatatttaatttaatgaagtgatatgaaattattttgtaaacaATTTG-TCAT--AAAAGTGG-AG-A-CCA-CGG-TATGTAT--TC
gi|11 : aatgttgaaggagcgaaatgggggtttcacatgggccttggcgtgagtaagttagatatattgaaggaataaataacatgagcaatttgagtataaatttaaaagtacataatatttggggaaaaaatctcacggctgattgatcgatataagacactggctcatcctttaccttacatAT-CTTTATCAAA-TATAATAGCCAT-G-C-ATAGAATGT-----------------------------------------GAAAT--T-GCTGAGCT-TCGAACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTTTGT---CTGT-AAGAAAAGCAA---GCGATA-AA-GCTA--AAAGGTTAATTTAAAAAAAACCC-A-TCTTATTTGAGTGTTTATT-ACATTACCATAACAA-AA--TTATACT--G--A-------TAA------ATAGA-CGC-CGG-A-------CGCGCCAAAT-ACAACTtcgca
gi|12 : TACTAAA-TATAATAGCTAA-AAG-ATATAAAGTATCACTAGAATATTGAC--------------------TTT-AAAAAA-T-TCGGAGCC-TC-AAACGTT---------TGAT--------------------AA-AAG-ACACTT--------GAGAAAAACAAAAAGCGATG-AA-GCTG--AA----AGGTT-ACGAAAG-TCA-A-GATCGTTTGAATG--TAT-------------------A--TTCTACT--G--AAA---ACTGA-CATA-ATTGA-CGCGCGA-T-------CGTTCCGAAC-
gi|13 : AAAA--T-GCTGAGCCTCC-AACCTTTAGACTATTTTGATTTGGG--CTCGATATT--CGAATAAG-CTATTT---CCAT-AAAAAAAGCAA---GCGAT--AAAGCTA--AA----TGATT-GAAACAAATCG-AGGCTCCTTTGAGTGTTTATT--C-----CATAACAGCAAC-TTCTACT--GGAAAAAATA-TAACCATG-ATT--------GG-G-------TGCGCC-AATAACAA
gi|14 : -GATT----AGTA---TT-CATTATAGC-TTGAAAAA--TACTTT-GAC-------------------AA-a
gi|14 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtCCCTCTCC--CC--C--AC-T-TTTG-AAAATGGG--G---G--C-AAA-ACTA--TGC-------CCC-C-----CCCC--C----C--CCtaagggggggggaggggggggggggggggggggcatagttttgcccccattttcaaaagtgggggagagggtgaattgcccacacacccttcccc
gi|14 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtgattagtattcattatagcttgaaaaatactttgacaataagggggggggagggggggCC--CC--C--AT-T-TTC--AAAAGTGG--GGGAG--A-GGGTG--AATTGC-------CCA-C-----ACAC--C----C--tgaattgcccacacacccttcccc
gi|15 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtgattagtattcattatagcttgaaaaatactttgacaataagggggggggaggggggggggggggggggggcatagttttgCACGCAAAA-AATTAAAAGGCA-CA-TAG----T------CA--C----TGATCT--G-----TTTT---------GA--AAGA--------GGG--GG--------CATTCTTA--AA--AA-A--------AATAAGGAGAA-AAGGC------------A-----C-AGAGAC-------A-C-CGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTttcccc
gi|16 : catgcaggataggcataggactgggacaaacttctaaacaatgtgaaaaaaA-----A--TC--AA-A--------AT-------AATAA---------------G-----C-GTAAAAAA----CA-C-TGT--T-C-TGTAACTA--CT---T-CACT----AGTAA--TT-CATTATAGC-TTGAAAAA--TAC-TT-GAC-------------------AATAGGAGGGGGACAAAAAC-ATA---GT---------------------TTTG---------CCTCCT--CC--T--AC-T-TTC--AAAGGTGG-----------GGG-G--AT-TAT-------CCC-C-----CCA--------C--CCGGCT-CC---------A-A--------CGCCCAT-G
gi|17 : ctgtaC--AA-A--------AA-------TA-AA---------------G-----G-ACAAAC-----------TGTG-T-C-TGTAAATA--CT---AAGACT----GATAA--TT-CATTACAGC-TTT-AAAA--TAC-TT-GAC-------------------AA-A-----------------A
gi|18 : aaaatgtgtataAAT-A-A-GTTCATATGGGTGTTTATC-AT-----CAGAGCA--AATTTTCTACT--G--AAATgataggggggggggcataacatcctttcatgttttgcccctcccttttcaagtgggggcaaatcccatgcccacg
gi|2 : attcaattagtaattttagcatacatttacataaataattgataaaattatgacagtaaattggtttgagacattggtggagggaaggtAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCAACA-T------T------AA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAC------CA-CATGT--T-C-TGTAATTA--CT---A-GACT----AGTAC--GG-CATTATAGC-TTGAAAAA--TAC-TTAGAT-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CCGTC--AC-T-TT---AAAAGTGG--G---G--C-GGG-G--A--TAC-------TCC-C-----TCAC--C----C--CCGGTT-C----------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AG-CGGAGA-T--AGG-TTTTCTTACTAAGAACATTGCGGTC---TACTGAGCA-TGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATATC------TTGTCA-GT-T-TAATC--A-CATTTTC-ATC---ACAC-TCTTC-CA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTATCGAGATTTAGA-GCA-ATTA--TGAAAGAGCGGGGA-GGGGGGGGGGGGGGGGGGTAGT-T--GATTTCGGTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAA-AT-----AAACAGTTTAGGCAGAA-TACTTTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-AT-CAGCGTA--------------AC--------------------TTTGGAAAA--T-GCTGTGCT-CC-AACCTTT---------TGATT-GGGC-CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCT-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA--GCGCGG-G-------CGCGCCGAAT-ACAA-TAGcaaagtattgagagtactgt
gi|20 : ctaataAGCAA---GCGATA-AA-GCTA--AA----TGATT-AAACAAAATCT-A-GCTCGTTTGAGTGTTTATT-CC-----CATAACAA-AC--TTCTACT--G--AAAAATATTAACCATG-ATT---------G-G-------TGCGCCCAAT-ACAACTAG
gi|22 : TAGAC-------A-C-TGT--T-C-TGTAACTA--CG---A-GACA----AGTAA--TT-CATTATAGC-TTG
gi|23 : ct-AAAACCA--AA----CGGCT-AAGAAAA-TCA-A-GCTCATTTGAGTGTTTATT-AC-----CATAGCTG-AA--TTCTACT--G--AAAAACATTGTCCACA-ATTGA-AGCGCAG-A-------CGCGCCGAAT-ACTACTgcacttttttataataagggggggggaggggggcatagttacctggctccagtgtacgcccatg
gi|24 : c-T------T------GA--C----CTA-CTCTG-----TTTT---------GA--AGGG--------GGGTGGGGG------CA-----A--GC--AA-A--------AA-------AA-AACCATAATACAAACAAA-----C-ATGGAC-------A-C-TGT--T-C-ATTAATTA--CT---G-GACT----AGTAA--TG-CATTATAGC-
gi|25 : T-GGC-------------------AA-A-----------------ATAATAGT---------------------TTTGCCCCCCCCTCCCCCC--CC--CCGAC-T-TT---CAAGGGGG--G---
gi|26 : gaagttgtaactgaaaaatactttacatacaacaggggtaggaggggggtggggCCCC--TC--CGAACGT-TC---AAAGGTGG--G---T--G-GGG-G--A--GTC-------CCT-C-----CC---------------GCT-CC---------C-A--------CGCCCAT-G
gi|27 : tgtaactggaaaaatactttaacaatacagtgggagggcgcaaatcaaag-A-----------------ATA---CT---------------------TTTGCCACCCCCC----CC--CC--G--CT-T-TT---AAAAGAGG-----------GGG-G--T--TAC-------CCC-C-----CC-C--CTTTTC--CGGGCT-CC---------T-A--------CGTCCAT-G
gi|28 : gttacttgaccaaaaaaaaggggggggtGCAA--TT-CATTATAGC-TTGAAAAA--TAC-TT-GACGATTGGTGGGGGAAGGCAGAA-AC----------------ATA---AT---------------------GTTGCTCCCCCCCCCC
gi|29 : ------CA-----A--GC--AG-A--------AA-------GG-GGGC-------------A-----C-ATAGAC-------A-C-TGT--T-T-AGTAACTATACT---A-GACTGTCTAGTAA--TT-C------GT-TTGAAAAA---AC-TT-GAtgataaatgaaattgccaccccggttc
gi|3 : AT-AAGT-TGGCAAGCAAAA-GAC-AAAAGCAA-CA-T------T------GAA-C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAT------CA-C-TGT--TTC-TGTAATTA--CT---A-GACT----AGTAC--GG-CATTATAGC-TTGAAAAAAATAC-TT-GAT-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCCACCCGTC--AC-T-TT---AAAAGTGG--G---G--C-GGG-G--A--TAC-------TCC-C-----TCAC--C----C--CCGGAT-TC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGCCGGGA--TA---G-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCA-TGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATATC------TTGTCAAGT-TGTAATC--ATCATTTTCTATC---ACAC-TCTTCGCA---AA-TATGTCAT--G-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTAT--GAAAGAGCGGGGAGGGGGGGGGGGGGGGGGGGTAGTAT--GATTTC-GTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGTTGAACTT-GGTA-----CCCGACTTGG--TA--TAGATCCC-T-ATTCATTTG-TCAT-G-AAAGTGG-AG-ACCAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAATTAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAGCGTA--------------AC--------------------TTT-GAAAA--T-GCTG---T-CC-AACC-TT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CGGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----T-AGT-ATAAAAAATCT-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAA-CATG-ATTGA-CGCGC-G-G-------CGCGCCGAAT-ACAACTttcgtgtaaaaacatctaaatcata
gi|30 : GACACGCAAAA------AAGGGCA-CA-T------A------GT--C------A-CT--GATTTATTTT---------GAAGAGGG--------GGG--GGGG------CA-----T--TCTTAA-G--------AA-------AA-GGC--------------A-----C-ACAGA-------CA-C-TGT--T-C-TGTAA
gi|31 : aatgtgacaaAAAGGGG--G---G----GGG-G--G--TGCAGTTGTATCC-C-----ATATA-T----C--CCGGCT-CC---------T-A--------CGCCCAT-G
gi|32 : aaacattattttgccttcttacccctttctatgagggCC--CT--C--TC-T-TTTCAAAAAGGGG--G---G--G-GGG-G--A--TGC--------------------C--T----C--CCGGTT-CC---------T-A--------TGGACAT-G
gi|33 : agaaaaaaaggggggaggcaataacttacttttg-CA---AA-TATCTCAT--G-TACC----GGGGTCT------TGCATACA---CGTC------TTGATTTACTAT-GGGCTTTAGA-GCA-ATTATT-GAATGAG-GGGG--GGGGGGGGGGgaa
gi|34 : CCCCCCC--CC--C--TT-T-TC---AAAAGTGG--G---G--A-GCA-A--T--TGC-------CCC-CA----CCCC--C----CTTCCGGCT-CC---------T-A--------CGCCCA
gi|36 : aaaacatactattatactattgAGTG-TGATCCGTATAAGGACCAAC--CTCATTCA-TGTGGGCATC--------GACA-GT-T-TT-TCAGA-CATTTTC-GGC---A-AT-CCTTT-Caga
gi|37 : ctttaaCCCCCC--CC--C--CC-T-TTCA-AAAAGGGGTGG---G--T-GGG-T--AATTGC-------CCC-CGTGCCCCAC--C----C--CCGGCT-CC---------T-A--------CGCCCAT-G
gi|39 : ttgCCCCCCCCACACA--CA--C--AC-T-TT---GGAAA-GG--G---G--G-GGG-G------GC-------CCC-A-----TCTC--C----C--TCGGCT-CC---------T-A--------CGCCCAT-Ga
gi|4 : T----AGTAA--TG-CATTATAGC-TTGAAAAA--TAA-TT-CAT-------------------AA-A-----------------ATA---TT---------------------TCTGCCCCCCCCCTCCACT------------T-TT---ACAAGTGG--G---GG-C-GGG-GG-A--TAC-------CCC-C-----TCAC--C----C--C-GGCT-CC---------T-ATACCGTGACGCCCAT-GCGTGTT--AATCAG--TA-AGACGGGAA-TG-AGG-TTTTCTTA------ACA------------------CG-TGAC--GTATAATGATCAATC-CTCATGCAATGT-GATAGT------TTGTCA-GT-T-T---TCGA-CATTT-C-ATC---ACAC-C-TTC-CA---AA-TCT-TCAT--G-TACC----GGG-TCT------TGCAATGTACACGTT------TTGATTTACTAT-GAGATT-AGA-GCA--TTATT-GAAAG--CGGGG--GGGTGGGGGTG-------TAGT-T--GACTTC-GTGTGCATGTA-GCCTA----A-AGTAG---------AA-TAATGCATA-----T---at
gi|4 : ACCACATAAT--GGCGC---TAAAT-ATGCATA-----TT--AAGA---CATT---GGGAAGGAGGATGT-TGACT---GTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGGAAG-A-CAG-C---TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATCC-TAC------GAATAT-----AAACAGTTTAGGCA-AA-TA------TATATAGCTTACCAGA-TATAATAGCCAT-A-G--TACAACGTA--------------AC--------------------TTT-GAAAA--TAGCTGA--C-CC-AACCTTT---------TGATT-GGG---TCGATATT--CGAATAAGCCTATTT---CCGT-AAGAAAAACAA---GCGAT--AAAGCTA--AA----TGA-T-GAAAAAAATCT-A--CTCGTTTGAGTGTTTA-T-AC-----CATA--AG-AA--TTC-ACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-GC------CGCGTCttaatttaataatgatatgaattatttgtaaccacataatggcgctaaatatgcatattaagacattgggaaggaggatgttgactgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctg
gi|40 : tagtaatgcattatagcttgaaaaataattcataaaatatttctgccccccccctccacttttacaagtgggggcgggggataccccctcaccccggctcctataccgtgacgcccatgcgtgttaatcagtaagacgggaatgaggttttcttaacacgtgacgtataatgatcaatcctcatgcaatgtgatagtttgtcagttttcgacatttcatcacaccttccaaatcttcatgtaccgggtcttgcaatgtacacgttttgatttactatgagattagagcattattgaaagcgggggggtgggggtgtagttgacttcgtgtgcatgtagcctaaagtagaataatgcatatttaatttaataatgatatgaattatttgtaCCCCG--TC--C--AC-T-TTC--AAAAGTGG--G---GAGC-GGG-A--AA-TTT-------CCC-C-----CCTC--C----C--CCGGGT-CC---------T-A--------CTCTCAT-Gtg
gi|42 : CCCCC--CC--C--CT-T-TT---GAAAGTGG--G---G------G-G--G--CGC-------CCC-C-----CC----T----C--CCTGCT-CC---------T-A--------CGCCCAT-G
gi|44 : -------------------AA-G-----------------ATA---GT---------------------TTTG--------CCCCTCC--CC--C--AC-T-TTC--AAAAGtt
gi|45 : ggggggggggggcaaaGG--G---G--G-GGG-C--AATTGC-------CTC-C-----CCATGTC----C--CCGGCT-CC---------T-A--------CACCCAT-
gi|46 : gggAATATATTAACCATG-ATTGA-CGCGCGG-G------------CGAAT-ACAACTAG
gi|47 : GTGG-AG-A-CAG-CTA-TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATccaa
gi|48 : AGGCA-CA-TAGTCACT------GA--C----CT---T--------TTTT---------GA--AAGG--------GGG--GGGG------
gi|5 : AAATCAA-TGTGGCAAGCAGAA-CAA-AAAAGGCA-CACT------T------GA--A----CTA-CTCTG-----TTTTTGGACG---GG--GGGG--------GGG--GGGG------CA-----G--GC--AA-A--------AA-------GA-AA---------------AAAAGAC-ATAGAC-------A-C-TGT--T-C-TGTAAC-A--CT---A-GACT----AGTAA--TTGCAT-ATAGC-TTGAAAAAA-TAC-TTTGAT-------------------AA-A-----------------ATA---GT---------------------TT-GCCCCCCCCCCTTCCT--TC-----AC-TCTT---AAAAGTGG--G---G--C-AGG-G--G--TGC-------CCG-C-----CC---------C--CCGGCTTCC---------T-A--------CGCCCA--GC-TGTT--A-TCAA--TACAGACGGGAA-TGCAGG-TTTTCGT--TAAGA-CATG-TGG-TCTATACTGACAGATGAT--GTATAATGATCAAATTCTCATG---TGTAGATACCATGTACTTGTCA-GTCT-TAATCCGA-CACTTCC-ATCTCAGCAC-CTTGC-CA---AAATATGTCATATG-TACCA---GGGGTCTGTGCTGTACA-------CGTT------T-GATTTACTAT-GGGATTTAGAGGCA-ATTA-TTGAAAGA------------GAAGGGGGGGGGGGTAGT-TTGAACTTC-ATGTGCATGTAGGCCTA----A-AGTA----------AA-T-ATATATA-----T---g
gi|5 : GTTGGGCGC---TAA-T-ATGCATA-----TTAAAGGGACCCACCTGGGGGAAGGATTGGTT-GAAATT-GGTATGGATCCC--CCTGTT-GAAGTAAAT-AA-TAATTCATGT--TCAT-GAAAAtattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaacgttgggcgctaatatgcatattaaagggacccacctgggggaaggattggttgaaattggtatggatccccctgttgaagtaaataataattcatgttcatgaaaa
gi|50 : aaatcaatgtggcaagcagaacaaaaaaggcacacttgaactactctgtttttggacggggggggggggggcaggcaaaaagaaaaaaagacatagacactgttctgtaacactagactagtaattgcatatagcttgaaaaaatactttgataaaatagtttgccccccccccttccttcactcttaaaagtggggcaggggtgcccgccccccggcttcctacgcccagctgttatcaatacagacgggaatgcaggttttcgttaagacatgtggtctatactgacagatgatgtataatgatcaaattctcatgtgtagataccatgtacttgtcagtcttaatccgacacttccatctcagcaccttgccaaaatatgtcatatgtaccaggggtctgtgctgtacacgtttgatttactatgggatttagaggcaattattgaaagagaagggggggggggtagtttgaacttcatgtgcatgtaggcctaaagtaaatatatatattattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaac-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTT-ATTT
gi|6 : --GTATAATAATCTATTG-TCATATAGTGCAGATA-C------TGCCCA-GT-T-CA-TCTGA-AATTTT--ATC---TCAC-CCTTC-CATATAA-TGTACCAA--G-TACCAGCTAGGGTCT------TA----------------------------TAG-GAG---TATA-ACA------TTGAAAGAGCGAAT--GGGAGAGGAGGG
gi|6 : TA-----T---AAGA---CACT---AGGAAAGGATTCGG-G--TTT-AG-------CCTTATTTAGC--A--TA-------T-ATTT-TTTG-AAAT--AAAAGTGG-AG-A-CCA-CTG-TGTGTATCCTCGC-ATCT-AAACACGT--GATTTAT---TAGGGAAAAAAATACCAAACAAACAGTTAA---AGAG-TAA-ATAT-ATAT-CTTTATCAAA-TATGATAGCCAA-A-ATATACAAAGTA--------------ACATTGTATGGAGTTTGATGACTTT-GAAAAATT-GCTGATCC-TC-GAACTTTAATTC----TGATT-GGA--CTCGATATTTGTGGTTCAG-TTATTT---CCGT-cgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaaagtttgacggttgattattataagacactaggaaaggattcgggtttagccttatttagcatatattttttgaaataaaagtggagaccactgtgtgtatcctcgcatctaaacacgtgatttattagggaaaaaaataccaaacaaacagttaaagagtaaatatatatctttatcaaatatgatagccaaaatatacaaagtaacattgtatggagtttgatgactttgaaaaattgctgatcctcgaactttaattctgattggactcgatatttgtggttcagttatttccgtttataaaaaacgaatcaaat
gi|7 : gtataataatctattgtcatatagtgcagatactgcccagttcatctgaaattttatctcacccttccatataatgtaccaagtaccagctagggtcttataggagtataacattgaaagagcgaatgggagaggagggcgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaaagtttgacggttgattatA-------AA-AA---------------A-----------AC------CA-C-TGT--T-C-TGTAACTA--CTTTCA-GGCT----AGTAATGTT-CATTATAGCTTTG--AAA--TAC-TT-GAC-------------------AATAAGGAGGCGGACAAAAACATA---GT---------------------TTTG-----CCCCTTTCCT--CC--T--AC-T-TTC--AAAGGTGG-----------GGG-G--AT-TAT-------CCC-C-----CCA--------C--CCGGCT-CC---------CAA--------CGCCCAT-Gttataaaaaacgaatcaaat
gi|8 : catatatagactgatttttaatgaggagggagcacacttctaaatgtggcaaagcaaccaaaaaaagggggggcacatgtagagcactttggttgtgtgtgtgttgtgtggtgtgcgtgtaaactgtaatcaaaatatagcgtA-A--------AA-------GC-AC---------------A-----T-ATAGAC------CTTC-TGTATT-T-TGTAACTA--CT---A-GAAT----AGTAA--TT-CATTATAGC-TCGAAGAA--TAC-TT-GA--------------------AA-G-----------------A-A---GTGGAGGTTGGGGAAAAACATAATTTG-------CTCCCCCT--CC--C--AC-T-TTC--AAAAGTGG--G---A--G-GGG-C--AATTGC-------CAC-C-----ATGC--C----C--CCGGCT-CC---------C-A--------AATCCA
gi|9 : caagacactgatctcatttgaatgcgggggagtgggttctaaatgtgacaaacaaaacataggatAAT-AT-G-TAACAAGCAAAA-GGT-AAAAAAAA-AA-T------CCATAAAAA--CAGTGCTG--T--G-----TTTT---------GA--GGGG--------GGG--GGGGGACTTCCA-----AATGT--GATA--------AG-------CA-GAGGGGC----------A-----C-ATAGACACTGTTCA-C-TGT--T-C-TGTAACTA--CT---A-GACTGGCTAGTAA--TT-CGTTATAGC-TTGAAAAA--
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TCAATGCATGATTTAGATCCATTCTCATTGCATGTATATAATGAAGATACTGACCAGTTTAGCAAAAGTTCCAAGTATAATAAGTACCAGGGTCTTATACTGACAGTTATGTTGAAGGAGCTAGTAAAGGGGATGGGAGCTCTGG
Unaligned ( gi|21 ): CACCGAGTAATAAACAGGCAACTGAATGCTATGTATTATGAACAGACAAATGAATGTTTGTAATAAATAGACAAATATGTTTTATAAAAATATTGAATAATTCGTATTTCAGC
Unaligned ( gi|35 ): ATAGGGAGGGGGATTACTGGCTTTAAATGGGCCCAGGAGAAAATATTTTTTAATAACAATTGAGCGTAACTTATGATAATTGATAAA
Unaligned ( gi|38 ): CAATGAACATGCAGTGCAGATACAGCCCAATTTATCTGACAATTTATCTCGCCTTTCCGTGTATTGCAAGTATCA
Unaligned ( gi|41 ): TAATTTGTTTTGATTGGGGGGGGGGGGGGGGGGTTGGTAAAAAAAAAAAAAGACAGAG
Unaligned ( gi|43 ): GAGGTGGATGGACTTCTAATTATGCCCCACCCGGCTCCTACGCCCATGT
Unaligned ( gi|49 ): AGCCCCTTCCACCTTAATATTATTTATGTAGCTAAAA
Unaligned ( gi|51 ): CCCCCCCCCTTTGATAGTGGTATTTAGAGGG
Alignments
lowQualScore : 1 111 11111 444444444444444444444444444444444444 333333333 11111111 111111 11111111 11111111 1111111 44444444444444444444444 22222222 1111 5555555555555555555555555555555555555555555555555555555555555555555555 1 1111111 1111111 1111111111111111 111 11 111 5555555555555555555555555555555 111 2222222 11 1 1111 111 1111 111111 33333333333333333 11 222 11 11 11 2222 1111111111 1 111111111 111 11111 1 111111 1111 11 222222 22222 2222222 666666666666666666666666666666666666 1 11 333333333 11 1 11111 1111111
lowQualScore : 0 777 22222 5 4 666666666666666666666666666666666666 000000000 66 66666666 66 111111 00000000 55 3 22222222 0000000 3 00000000000000000000000 33333333 2 2 66 2 2 77 555 2 1111 33 2 2 2 44 6 3 6666666666666666666666666666666666666666666666666666666666666666666666 0 22 55 55 1 1 1 8888888 8888888 6666666 2 5555555555555555 22 2 888888888 2 88888888 2 111 11 8 5 88 222 8 2222222222222222222222222222222 77 5 222 55 0 7777777 0 0 5 5 5 77 0 5 0 0 5 3333 5 5 5 000 3 77 5 7777 666666 44444444444444444 1 5 1 5 00 111 55 33 1 5 8 11 11 1111 5 4444444444 5 5 444444444 999 111 0 6 1 6 66666 0 111111 1 0000 6 5 00 5 5 5 5 0 5 66 5 5 5 9 8 333333 0 00000 3 9999999 3 6 5 5 777 888888888888888888888888888888888888 1 11 5 22 5 5 0 222222222 5 11 66 0 888 5 888 99 7 66 9999 0 4 0 55 4 44 00000 1 44 99 55 55 4 5 4 66 4 7777777 0 4
lowQualScore : . ... ..... . . .................................... ......... .. ........ .. ...... ........ .. . ........ ....... . ....................... ........ . . .. . . .. ... . .... .. . . . .. . . ...................................................................... . .. .. .. . . . ....... ....... ....... . ................ .. . ......... . ........ . ... .. . . .. ... . ............................... .. . ... .. . ....... . . . . . .. . . . . . .... . . . ... . .. . .... ...... ................. . . . . .. ... .. .. . . . .. .. .... . .......... . . ......... ... ... . . . . ..... . ...... . .... . . .. . . . . . . .. . . . . . ...... . ..... . ....... . . . . ... .................................... . .. . .. . . . ......... . .. .. . ... . ... .. . .. .... . . . .. . .. ..... . .. .. .. .. . . . .. . ....... . .
lowQualScore : 0 000 77777 0 4 222222222222222222222222222222222222 666666666 11 11111111 11 555555 66666666 00 3 11111111 0000000 1 77777777777777777777777 66666666 9 9 88 9 9 33 444 9 3333 44 5 7 9 22 7 1 7777777777777777777777777777777777777777777777777777777777777777777777 8 88 55 55 0 9 9 3333333 2222222 5555555 0 9999999999999999 88 2 999999999 2 11111111 5 888 00 0 6 88 000 0 6666666666666666666666666666666 99 0 333 00 1 0000000 1 3 7 7 7 11 1 7 1 1 7 9999 7 0 0 000 0 99 7 9999 444444 66666666666666666 4 7 4 7 77 777 00 66 0 0 0 00 22 3333 7 6666666666 0 0 333333333 888 777 3 7 7 7 77777 8 777777 0 0000 7 7 00 7 0 0 0 1 0 99 7 7 7 3 0 000000 8 00000 2 0000000 8 7 7 7 333 000000000000000000000000000000000000 4 99 0 99 0 0 1 555555555 0 99 99 0 888 0 888 66 3 11 4444 8 4 8 00 0 77 00000 3 77 55 55 55 7 0 0 55 0 0000000 1 4
consensus : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GAC-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CC--C--ACTTTCAAAA-GT-GGG---G-C-GGG-G--A--TGC-------CCC-C-----CCAC--C----C--CCGGC-TCC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCG-TGAT--GTATAATGATCAATTTCTCATGCAATGTAGATAT------CTTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-C-A---AATATGTC--ATG-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTTGAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAA-TAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------AC--------------------TTT-GAAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
Reference ( family-189 ) : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GAC-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CC--C--ACTTTCAAAA-GT-GGG---G-C-GGG-G--A--TGC-------CCC-C-----CCAC--C----C--CCGGC-TCC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCG-TGAT--GTATAATGATCAATTTCTCATGCAATGTAGATAT------CTTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-C-A---AATATGTC--ATG-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTTGAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAA-TAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------AC--------------------TTT-GAAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
gi|1 : AAGCAAAACGAC-AAAAAGCA-CA-T------T------GAGTCGA--CT--CT--G-----TTTTTGAAGGGGAGG--AGGGGGGGGGGAGGG--GGGG------CA-----A--GC--AA-AAAAAATTTAA-------AA-AA---------------A-----CTATGGA-------CA-T-TGT--T-CTTGTAATTAC-CT---A-GACT----AGACA--TG-CATTATAGC-TTG-AAAAA--TAA-TT-GAT-------------------AA-A-----------------ATA----T---------------------TCTG----CCCCCCCCCCC--TC--C--ACTTTTAAAA-GT-GGG---G-CGGGG-G--A--TAC-------CCCAC-----TCA---C----C--CGGGC-TCCTTATTACCGT-A--------CGCCCATGGCGTGTTAAAATCAAGTTA-AGACGGGAATTG-AGGTTTTTCTTTC-AAGA---------------------CA-TGAT--GTATAATGATCAA--TCTCATGC-ATGTAATTA--------CTGGCA-GT-T-T-ATCCGA-CA-TTTC-ATC----CACACCTTC-C-A---AATCTGTC--ATGTTACC------GGTCT------TGCA-------TGTTACACGATTGA-TTACTAT-GAGATTTAGA-GCACATTATTGAAAAGACCGGGG--GGGGGGTGGTTAG-------GT-T--GACTTC--TGTGCATGTAGGCCTA----A-AGTAATATACTTTTAA-TAATGCATA-----T---
gi|1 : CAAA-AATGGCGCGT---TAA-TTATGCATAAGTTTT---AAGAATT-------GGGAAGGGATGTAT-GAACTTTGGTA-----CCC-ACT--GTATA--TAGAT-CCCT-AG-CATTTGGTCATTGAAA--TGG-AGGA-CAGGCTGATGTATAT--TCGCCACTTTAAA-ACTTTTGATTTATCCATAT------AAATAT-----AAACAGTTCAGGCAAAA-------ATCATAG-CCTTATCAAAATATAATAGCCATTA-G-ATACAACTTA--------------AC--------------------TTTTGAAAA--T-GCTGAGCC-TC-A-CCTTT---------TGATT-GGGTTCTCGATATT--CGAATAAGGCTATTTGTTCCGTTAAAGAAAG--A---ACGAAATAAAGTTATAAA----TGATT-AAAAAAAATCTTA-GCTCGTTTGACTGTTTATTTAC-----CATAACAG-AA--TTCTACTTGA--AAATATATTAACC-TGAATTGACCGCGCGGCGCGCCGGTCGCGCCGAAT-ACAACTttaatttaatgaagtgatatgaaattattttgtaaacacaaaaatggcgcgttaattatgcataagttttaagaattgggaagggatgtatgaactttggtacccactgtatatagatccctagcatttggtcattgaaatggaggacaggctgatgtatattcgccactttaaaacttttgatttatccatataaatataaacagttcaggcaaaaatcatagccttatcaaaatataatagccattagatacaacttaacttttgaaaatgctgagcctcaccttttgattgggttctcgatattcgaataaggctatttgttccgttaaagaaagaacgaaataaagttataaatgattaaaaaaaatcttagctcgtttgactgtttatttaccataacagaattctacttgaaaatatattaacctgaattgaccgcgcggcgcgccggtcgcgccgaatacaact
gi|10 : aagcaaaacgacaaaaagcacattgagtcgactctgtttttgaaggggaggaggggggggggagggggggcaagcaaaaaaaatttaaaaaaactatggacattgttcttgtaattacctagactagacatgcattatagcttgaaaaataattgataaaatattctgccccccccccctccacttttaaaagtggggcgggggataccccactcacccgggctccttattaccgtacgcccatggcgtgttaaaatcaagttaagacgggaattgaggtttttctttcaagacatgatgtataatgatcaatctcatgcatgtaattactggcagtttatccgacatttcatccacaccttccaaatctgtcatgttaccggtcttgcatgttacacgattgattactatgagatttagagcacattattgaaaagaccggggggggggtggttaggttgacttctgtgcatgtaggcctaaagtaatatacttttaataatgcatatttaatttaatgaagtgatatgaaattattttgtaaacaATTTG-TCAT--AAAAGTGG-AG-A-CCA-CGG-TATGTAT--TC
gi|11 : aatgttgaaggagcgaaatgggggtttcacatgggccttggcgtgagtaagttagatatattgaaggaataaataacatgagcaatttgagtataaatttaaaagtacataatatttggggaaaaaatctcacggctgattgatcgatataagacactggctcatcctttaccttacatAT-CTTTATCAAA-TATAATAGCCAT-G-C-ATAGAATGT-----------------------------------------GAAAT--T-GCTGAGCT-TCGAACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTTTGT---CTGT-AAGAAAAGCAA---GCGATA-AA-GCTA--AAAGGTTAATTTAAAAAAAACCC-A-TCTTATTTGAGTGTTTATT-ACATTACCATAACAA-AA--TTATACT--G--A-------TAA------ATAGA-CGC-CGG-A-------CGCGCCAAAT-ACAACTtcgca
gi|12 : TACTAAA-TATAATAGCTAA-AAG-ATATAAAGTATCACTAGAATATTGAC--------------------TTT-AAAAAA-T-TCGGAGCC-TC-AAACGTT---------TGAT--------------------AA-AAG-ACACTT--------GAGAAAAACAAAAAGCGATG-AA-GCTG--AA----AGGTT-ACGAAAG-TCA-A-GATCGTTTGAATG--TAT-------------------A--TTCTACT--G--AAA---ACTGA-CATA-ATTGA-CGCGCGA-T-------CGTTCCGAAC-
gi|13 : AAAA--T-GCTGAGCCTCC-AACCTTTAGACTATTTTGATTTGGG--CTCGATATT--CGAATAAG-CTATTT---CCAT-AAAAAAAGCAA---GCGAT--AAAGCTA--AA----TGATT-GAAACAAATCG-AGGCTCCTTTGAGTGTTTATT--C-----CATAACAGCAAC-TTCTACT--GGAAAAAATA-TAACCATG-ATT--------GG-G-------TGCGCC-AATAACAA
gi|14 : -GATT----AGTA---TT-CATTATAGC-TTG-AAAAA--TACTTT-GAC-------------------AA-a
gi|14 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtCCCTCTCC--CC--C--ACTTTTGAAA-ATGGGG---G-C-AAA-ACTA--TGC-------CCC-C-----CCCC--C----C--CCtaagggggggggaggggggggggggggggggggcatagttttgcccccattttcaaaagtgggggagagggtgaattgcccacacacccttcccc
gi|14 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtgattagtattcattatagcttgaaaaatactttgacaataagggggggggagggggggCC--CC--C--ATTTTCAAAA-GT-GGGGGAG-A-GGGTG--AATTGC-------CCA-C-----ACAC--C----C--tgaattgcccacacacccttcccc
gi|15 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtgattagtattcattatagcttgaaaaatactttgacaataagggggggggaggggggggggggggggggggcatagttttgCACGCAAAA-AATTAAAAGGCA-CA-TAG----T------CA--C----TGATCT--G-----TTTT---------GA--AAGA--------GGG--GG--------CATTCTTA--AA--AA-A--------AATAAGGAGAA-AAGGC------------A-----C-AGAGAC-------A-C-CGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTttcccc
gi|16 : catgcaggataggcataggactgggacaaacttctaaacaatgtgaaaaaaA-----A--TC--AA-A--------AT-------AATAA---------------G-----C-GTAAAAAA----CA-C-TGT--T-C-TGTAACTA--CT---T-CACT----AGTAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GAC-------------------AATAGGAGGGGGACAAAAAC-ATA---GT---------------------TTTG---------CCTCCT--CC--T--ACTTTCAAAG-GT-GG--------GGG-G--AT-TAT-------CCC-C-----CCA--------C--CCGGC-TCC---------A-A--------CGCCCAT-G
gi|17 : ctgtaC--AA-A--------AA-------TA-AA---------------G-----G-ACAAAC-----------TGTG-T-C-TGTAAATA--CT---AAGACT----GATAA--TT-CATTACAGC-TTT--AAAA--TAC-TT-GAC-------------------AA-A-----------------A
gi|18 : aaaatgtgtataAAT-A-A-GTTCATATGGGTGTTTATC-AT-----CAGAGCA--AATTTTCTACT--G--AAATgataggggggggggcataacatcctttcatgttttgcccctcccttttcaagtgggggcaaatcccatgcccacg
gi|2 : attcaattagtaattttagcatacatttacataaataattgataaaattatgacagtaaattggtttgagacattggtggagggaaggtAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCAACA-T------T------AA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAC------CA-CATGT--T-C-TGTAATTA--CT---A-GACT----AGTAC--GG-CATTATAGC-TTG-AAAAA--TAC-TTAGAT-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CCGTC--ACTTT-AAAA-GT-GGG---G-C-GGG-G--A--TAC-------TCC-C-----TCAC--C----C--CCGGT-TC----------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AG-CGGAGA-T--AGG-TTTTCTTACTAAGAACATTGCGGTC---TACTGAGCA-TGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATAT------CTTGTCA-GT-T-TAATC--A-CATTTTC-ATC---ACAC-TCTTC-C-A---AATATGTC--ATG-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTATCGAGATTTAGA-GCA-ATTA--TGAAAGAGCGGGGA-GGGGGGGGGGGGGGGGGGTAGT-T--GATTTCGGTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAA-AT-----AAACAGTTTAGGCAGAA-TACTTTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-AT-CAGCGTA--------------AC--------------------TTTGGAAAA--T-GCTGTGCT-CC-AACCTTT---------TGATT-GGGC-CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCT-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA--GCGCGG-G-------CGCGCCGAAT-ACAA-TAGcaaagtattgagagtactgt
gi|20 : ctaataAGCAA---GCGATA-AA-GCTA--AA----TGATT-AAACAAAATCT-A-GCTCGTTTGAGTGTTTATT-CC-----CATAACAA-AC--TTCTACT--G--AAAAATATTAACCATG-ATT---------G-G-------TGCGCCCAAT-ACAACTAG
gi|22 : TAGAC-------A-C-TGT--T-C-TGTAACTA--CG---A-GACA----AGTAA--TT-CATTATAGC-TTG-
gi|23 : ct-AAAACCA--AA----CGGCT-AAGAAAA-TCA-A-GCTCATTTGAGTGTTTATT-AC-----CATAGCTG-AA--TTCTACT--G--AAAAACATTGTCCACA-ATTGA-AGCGCAG-A-------CGCGCCGAAT-ACTACTgcacttttttataataagggggggggaggggggcatagttacctggctccagtgtacgcccatg
gi|24 : c-T------T------GA--C----CTA-CTCTG-----TTTT---------GA--AGGG--------GGGTGGGGG------CA-----A--GC--AA-A--------AA-------AA-AACCATAATACAAACAAA-----C-ATGGAC-------A-C-TGT--T-C-ATTAATTA--CT---G-GACT----AGTAA--TG-CATTATAGC-
gi|25 : T-GGC-------------------AA-A-----------------ATAATAGT---------------------TTTGCCCCCCCCTCCCCCC--CC--CCGACTTTC--AA-GG-GGG---G-
gi|26 : gaagttgtaactgaaaaatactttacatacaacaggggtaggaggggggtggggCCCC--TC--CGAACGTTCAAAG-GT-GGG---T-G-GGG-G--A--GTC-------CCT-C-----CC---------------GC-TCC---------C-A--------CGCCCAT-G
gi|27 : tgtaactggaaaaatactttaacaatacagtgggagggcgcaaatcaaag-A-----------------ATA---CT---------------------TTTGCCACCCCCC-----C--CC--C--GCTTTTAAAA-GA-GG--------GGG-G--T--TAC-------CCC-C-----CC-C--CTTTTC--CGGGC-TCC---------T-A--------CGTCCAT-G
gi|28 : gttacttgaccaaaaaaaaggggggggtGCAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GACGATTGGTGGGGGAAGGCAGAA-AC----------------ATA---AT---------------------GTTGCTCCCCCCCCCC
gi|29 : ------CA-----A--GC--AG-A--------AA-------GG-GGGC-------------A-----C-ATAGAC-------A-C-TGT--T-T-AGTAACTATACT---A-GACTGTCTAGTAA--TT-C------GT-TTG-AAAAA---AC-TT-GAtgataaatgaaattgccaccccggttc
gi|3 : AT-AAGT-TGGCAAGCAAAA-GAC-AAAAGCAA-CA-T------T------GAA-C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAT------CA-C-TGT--TTC-TGTAATTA--CT---A-GACT----AGTAC--GG-CATTATAGC-TTG-AAAAAAATAC-TT-GAT-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCCACCCGTC--ACTTT-AAAA-GT-GGG---G-C-GGG-G--A--TAC-------TCC-C-----TCAC--C----C--CCGGA-TTC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGCCGGGA--TA---G-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCA-TGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATAT------CTTGTCAAGT-TGTAATC--ATCATTTTCTATC---ACAC-TCTTCGC-A---AATATGTC--ATG-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTAT--GAAAGAGCGGGGAGGGGGGGGGGGGGGGGGGGTAGTAT--GATTTC-GTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGTTGAACTT-GGTA-----CCCGACTTGG--TA--TAGATCCC-T-ATTCATTTG-TCAT-G-AAAGTGG-AG-ACCAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAATTAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAGCGTA--------------AC--------------------TTT-GAAAA--T-GCTG---T-CC-AACC-TT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CGGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----T-AGT-ATAAAAAATCT-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAA-CATG-ATTGA-CGCGC-G-G-------CGCGCCGAAT-ACAACTttcgtgtaaaaacatctaaatcata
gi|30 : GACACGCAAAA------AAGGGCA-CA-T------A------GT--C------A-CT--GATTTATTTT---------GAAGAGGG--------GGG--GGGG------CA-----T--TCTTAA-G--------AA-------AA-GGC--------------A-----C-ACAGA-------CA-C-TGT--T-C-TGTAA
gi|31 : aatgtgacaaAAA-GG-GGG---G---GGG-G--G--TGCAGTTGTATCC-C-----ATATA-T----C--CCGGC-TCC---------T-A--------CGCCCAT-G
gi|32 : aaacattattttgccttcttacccctttctatgagggCCC--TC--T--CTTTTCAAAAAGG-GGG---G-G-GGG-G--A--TGC--------------------C--T----C--CCGGT-TCC---------T-A--------TGGACAT-G
gi|33 : agaaaaaaaggggggaggcaataacttacttttg-C-A---AATATCTC--ATG-TACC----GGGGTCT------TGCATACA---CGTC------TTGATTTACTAT-GGGCTTTAGA-GCA-ATTATT-GAATGAG-GGGG--GGGGGGGGGGgaa
gi|34 : CCCCCC--CC--C--CTTTTCAAAA-GT-GGG---G-A-GCA-A--T--TGC-------CCC-CA----CCCC--C----CTTCCGGC-TCC---------T-A--------CGCCCA
gi|36 : aaaacatactattatactattgAGTG-TGATCCGTATAAGGACCAAC--CTCATTCA-TGTGGGCAT------C--GACA-GT-T-TT-TCAGA-CATTTTC-GGC---A-AT-CCTTT-C-aga
gi|37 : ctttaaCCCCCC--CC--C--CCTTTCAAAA-AG-GGGTGGG-T-GGG-T--AATTGC-------CCC-CGTGCCCCAC--C----C--CCGGC-TCC---------T-A--------CGCCCAT-G
gi|39 : ttgCCCCCCCCACACA--CA--C--ACTTTGGAAA-G--GGG---G---GGG-G------GC-------CCC-A-----TCTC--C----C--TCGGC-TCC---------T-A--------CGCCCAT-Ga
gi|4 : T----AGTAA--TG-CATTATAGC-TTG-AAAAA--TAA-TT-CAT-------------------AA-A-----------------ATA---TT---------------------TCTGCCCCCCCCCTCC------------ACTTTTACAA-GT-GGG---GGC-GGG-GG-A--TAC-------CCC-C-----TCAC--C----C--C-GGC-TCC---------T-ATACCGTGACGCCCAT-GCGTGTT--AATCAG--TA-AGACGGGAA-TG-AGG-TTTTCTTA------ACA------------------CG-TGAC--GTATAATGATCAATC-CTCATGCAATGT-GATAG------TTTGTCA-GT-T-T---TCGA-CATTT-C-ATC---ACAC-C-TTC-C-A---AATCT-TC--ATG-TACC----GGG-TCT------TGCAATGTACACGTT------TTGATTTACTAT-GAGATT-AGA-GCA--TTATT-GAAAG--CGGGG--GGGTGGGGGTG-------TAGT-T--GACTTC-GTGTGCATGTA-GCCTA----A-AGTAG---------AA-TAATGCATA-----T---at
gi|4 : ACCACATAAT--GGCGC---TAAAT-ATGCATA-----TT--AAGA---CATT---GGGAAGGAGGATGT-TGACT---GTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGGAAG-A-CAG-C---TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATCC-TAC------GAATAT-----AAACAGTTTAGGCA-AA-TA------TATATAGCTTACCAGA-TATAATAGCCAT-A-G--TACAACGTA--------------AC--------------------TTT-GAAAA--TAGCTGA--C-CC-AACCTTT---------TGATT-GGG---TCGATATT--CGAATAAGCCTATTT---CCGT-AAGAAAAACAA---GCGAT--AAAGCTA--AA----TGA-T-GAAAAAAATCT-A--CTCGTTTGAGTGTTTA-T-AC-----CATA--AG-AA--TTC-ACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-GC------CGCGTCttaatttaataatgatatgaattatttgtaaccacataatggcgctaaatatgcatattaagacattgggaaggaggatgttgactgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctg
gi|40 : tagtaatgcattatagcttgaaaaataattcataaaatatttctgccccccccctccacttttacaagtgggggcgggggataccccctcaccccggctcctataccgtgacgcccatgcgtgttaatcagtaagacgggaatgaggttttcttaacacgtgacgtataatgatcaatcctcatgcaatgtgatagtttgtcagttttcgacatttcatcacaccttccaaatcttcatgtaccgggtcttgcaatgtacacgttttgatttactatgagattagagcattattgaaagcgggggggtgggggtgtagttgacttcgtgtgcatgtagcctaaagtagaataatgcatatttaatttaataatgatatgaattatttgtaCCCCG--TC--C--ACTTTCAAAA-GT-GGGGA-G-C-GGGAA--A--TTT-------CCC-C-----CCTC--C----C--CCGGG-TCC---------T-A--------CTCTCAT-Gtg
gi|42 : CCCC--CC--C--CCTTTTGAAA-GT-GGG---G-----G-G--G--CGC-------CCC-C-----CC----T----C--CCTGC-TCC---------T-A--------CGCCCAT-G
gi|44 : -------------------AA-G-----------------ATA---GT---------------------TTTGCCCCTCCCC------------C--ACTTTCAAAA-Gtt
gi|45 : ggggggggggggcaaa-GGG---G-G-GGG-C--AATTGC-------CTC-C-----CCATGTC----C--CCGGC-TCC---------T-A--------CACCCAT-
gi|46 : gggAATATATTAACCATG-ATTGA-CGCGCGG-G------------CGAAT-ACAACTAG
gi|47 : GTGG-AG-A-CAG-CTA-TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATccaa
gi|48 : AGGCA-CA-TAGTCACT------GA--C----CT---T--------TTTT---------GA--AAGG--------GGG--GGGG------
gi|5 : AAATCAA-TGTGGCAAGCAGAA-CAA-AAAAGGCA-CACT------T------GA--A----CTA-CTCTG-----TTTTTGGACG---GG--GGGG--------GGG--GGGG------CA-----G--GC--AA-A--------AA-------GA-AA---------------AAAAGAC-ATAGAC-------A-C-TGT--T-C-TGTAAC-A--CT---A-GACT----AGTAA--TTGCA-TATAGC-TTGAAAAAA--TACTTT-GAT-------------------AA-A-----------------ATA---G----------------------TTTG-CCCCCCCCCCTTCC--TT--C--ACTCTTAAAA-GT-GGG---G-C-AGG-G--G--TGC-------CCG-C--------C--C----C--CCGGCTTCC---------T-A--------CGCCCA--GC-TGTT---ATCAA--TACAGACGGGAA-TGCAGG-TTTTCGT--TAAG-ACATG-TGG-TCTATACTGACAGATGAT--GTATAATGATCAAATTCTCATG---TGTAGATACCATGTACTTGTCA-GTCT-TAATCCGA-CACTTCC-ATCTCAGCAC-CTTGC-CAA---AATATGTCATATG-TACCA---GGGGTCTGTGCTGTACA-------CG-T------TTGATTTACTAT-GGGATTTAGAGGCA-ATTA-TTGAAAGA------------GAAGGGGGGGGGGGTAGT-TTGAACTTC-ATGTGCATGTAGGCCTA----A-AGTA----------AA-T-ATATATA-----T---g
gi|5 : GTTGGGCGC---TAA-T-ATGCATA-----TTAAAGGGACCCACCTGGGGGAAGGATTGGTT-GAAATT-GGTATGGATCCC--CCTGTT-GAAGTAAAT-AA-TAATTCATGT--TCAT-GAAAAtattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaacgttgggcgctaatatgcatattaaagggacccacctgggggaaggattggttgaaattggtatggatccccctgttgaagtaaataataattcatgttcatgaaaa
gi|50 : aaatcaatgtggcaagcagaacaaaaaaggcacacttgaactactctgtttttggacggggggggggggggcaggcaaaaagaaaaaaagacatagacactgttctgtaacactagactagtaattgcatatagcttgaaaaaatactttgataaaatagtttgccccccccccttccttcactcttaaaagtggggcaggggtgcccgccccccggcttcctacgcccagctgttatcaatacagacgggaatgcaggttttcgttaagacatgtggtctatactgacagatgatgtataatgatcaaattctcatgtgtagataccatgtacttgtcagtcttaatccgacacttccatctcagcaccttgccaaaatatgtcatatgtaccaggggtctgtgctgtacacgtttgatttactatgggatttagaggcaattattgaaagagaagggggggggggtagtttgaacttcatgtgcatgtaggcctaaagtaaatatatatattattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaac-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTT-ATTT
gi|6 : --GTATAATAATCTATTG-TCATATAGTGCAGATA-------CTGCCCA-GT-T-CA-TCTGA-AATTTT--ATC---TCAC-CCTTC-C-ATATAATGTACC--AAG-TACCAGCTAGGGTCT------TA----------------------------TAG-GAG---TATA-ACA------TTGAAAGAGCGAAT--GGGAGAGGAGGG
gi|6 : TA-----T---AAGA---CACT---AGGAAAGGATTCGG-G--TTT-AG-------CCTTATTTAGC--A--TA-------T-ATTT-TTTG-AAAT--AAAAGTGG-AG-A-CCA-CTG-TGTGTATCCTCGC-ATCT-AAACACGT--GATTTAT---TAGGGAAAAAAATACCAAACAAACAGTTAA---AGAG-TAA-ATAT-ATAT-CTTTATCAAA-TATGATAGCCAA-A-ATATACAAAGTA--------------ACATTGTATGGAGTTTGATGACTTT-GAAAAATT-GCTGATCC-TC-GAACTTTAATTC----TGATT-GGA--CTCGATATTTGTGGTTCAG-TTATTT---CCGT-cgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaaagtttgacggttgattattataagacactaggaaaggattcgggtttagccttatttagcatatattttttgaaataaaagtggagaccactgtgtgtatcctcgcatctaaacacgtgatttattagggaaaaaaataccaaacaaacagttaaagagtaaatatatatctttatcaaatatgatagccaaaatatacaaagtaacattgtatggagtttgatgactttgaaaaattgctgatcctcgaactttaattctgattggactcgatatttgtggttcagttatttccgtttataaaaaacgaatcaaat
gi|7 : gtataataatctattgtcatatagtgcagatactgcccagttcatctgaaattttatctcacccttccatataatgtaccaagtaccagctagggtcttataggagtataacattgaaagagcgaatgggagaggagggcgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaaagtttgacggttgattatA-------AA-AA---------------A-----------AC------CA-C-TGT--T-C-TGTAACTA--CTTTCA-GGCT----AGTAATGTT-CATTATAGCTTTG---AAA--TAC-TT-GAC-------------------AATAAGGAGGCGGACAAAAACATA---GT---------------------TTTG-----CCCCTTTCCT--CC--T--ACTTTCAAAG-GT-GG--------GGG-G--AT-TAT-------CCC-C-----CCA--------C--CCGGC-TCC---------CAA--------CGCCCAT-Gttataaaaaacgaatcaaat
gi|8 : catatatagactgatttttaatgaggagggagcacacttctaaatgtggcaaagcaaccaaaaaaagggggggcacatgtagagcactttggttgtgtgtgtgttgtgtggtgtgcgtgtaaactgtaatcaaaatatagcgtA-A--------AA-------GC-AC---------------A-----T-ATAGAC------CTTC-TGTATT-T-TGTAACTA--CT---A-GAAT----AGTAA--TT-CATTATAGC-TCG-AAGAA--TAC-TT-GA--------------------AA-G-----------------A-A---GTGGAGGTTGGGGAAAAACATAATTTG-------CTCCCCCT--CC--C--ACTTTCAAAA-GT-GGG---A-G-GGG-C--AATTGC-------CAC-C-----ATGC--C----C--CCGGC-TCC---------C-A--------AATCCA
gi|9 : caagacactgatctcatttgaatgcgggggagtgggttctaaatgtgacaaacaaaacataggatAAT-AT-G-TAACAAGCAAAA-GGT-AAAAAAAA-AA-T------CCATAAAAA--CAGTGCTG--T--G-----TTTT---------GA--GGGG--------GGG--GGGGGACTTCCA-----AATGT--GATA--------AG-------CA-GAGGGGC----------A-----C-ATAGACACTGTTCA-C-TGT--T-C-TGTAACTA--CT---A-GACTGGCTAGTAA--TT-CGTTATAGC-TTG-AAAAA--
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TCAATGCATGATTTAGATCCATTCTCATTGCATGTATATAATGAAGATACTGACCAGTTTAGCAAAAGTTCCAAGTATAATAAGTACCAGGGTCTTATACTGACAGTTATGTTGAAGGAGCTAGTAAAGGGGATGGGAGCTCTGG
Unaligned ( gi|21 ): CACCGAGTAATAAACAGGCAACTGAATGCTATGTATTATGAACAGACAAATGAATGTTTGTAATAAATAGACAAATATGTTTTATAAAAATATTGAATAATTCGTATTTCAGC
Unaligned ( gi|35 ): ATAGGGAGGGGGATTACTGGCTTTAAATGGGCCCAGGAGAAAATATTTTTTAATAACAATTGAGCGTAACTTATGATAATTGATAAA
Unaligned ( gi|38 ): CAATGAACATGCAGTGCAGATACAGCCCAATTTATCTGACAATTTATCTCGCCTTTCCGTGTATTGCAAGTATCA
Unaligned ( gi|41 ): TAATTTGTTTTGATTGGGGGGGGGGGGGGGGGGTTGGTAAAAAAAAAAAAAGACAGAG
Unaligned ( gi|43 ): GAGGTGGATGGACTTCTAATTATGCCCCACCCGGCTCCTACGCCCATGT
Unaligned ( gi|49 ): AGCCCCTTCCACCTTAATATTATTTATGTAGCTAAAA
Unaligned ( gi|51 ): CCCCCCCCCTTTGATAGTGGTATTTAGAGGG
Alignments
lowQualScore : 1 111 11111 444444444444444444444444444444444444 333333333 11111111 111111 11111111 11111111 1111111 44444444444444444444444 22222222 1111 5555555555555555555555555555555555555555555555555555555555555555555555 1 1111111 1111111 1111111111111111 111 11 111 5555555555555555555555555555555 111 2222222 11 1 1111 111 1111 111111 33333333333333333 11 222 11 11 11 2222 1111111111 1 111111111 111 11111 1 111111 1111 11 222222 22222 2222222 666666666666666666666666666666666666 1 11 333333333 11 1 11111 1111111
lowQualScore : 0 777 22222 5 4 666666666666666666666666666666666666 000000000 66 66666666 66 111111 00000000 55 3 22222222 0000000 3 00000000000000000000000 33333333 2 2 66 2 2 77 555 2 1111 33 2 2 2 44 6 3 6666666666666666666666666666666666666666666666666666666666666666666666 0 22 55 55 1 1 1 8888888 8888888 6666666 2 5555555555555555 22 2 888888888 2 88888888 2 111 11 8 5 88 222 8 2222222222222222222222222222222 77 5 222 55 0 7777777 0 0 5 5 5 77 0 5 0 0 5 3333 5 5 5 000 3 77 5 7777 666666 44444444444444444 1 5 1 5 00 111 55 33 1 5 8 11 11 1111 5 4444444444 5 5 444444444 999 111 0 6 1 6 66666 0 111111 1 0000 6 5 00 5 5 5 5 0 5 66 5 5 5 9 8 333333 0 00000 3 9999999 3 6 5 5 777 888888888888888888888888888888888888 1 11 5 22 5 5 0 222222222 5 11 66 0 888 5 888 99 7 66 9999 0 4 0 55 4 44 00000 1 44 99 55 55 4 5 4 66 4 7777777 0 4
lowQualScore : . ... ..... . . .................................... ......... .. ........ .. ...... ........ .. . ........ ....... . ....................... ........ . . .. . . .. ... . .... .. . . . .. . . ...................................................................... . .. .. .. . . . ....... ....... ....... . ................ .. . ......... . ........ . ... .. . . .. ... . ............................... .. . ... .. . ....... . . . . . .. . . . . . .... . . . ... . .. . .... ...... ................. . . . . .. ... .. .. . . . .. .. .... . .......... . . ......... ... ... . . . . ..... . ...... . .... . . .. . . . . . . .. . . . . . ...... . ..... . ....... . . . . ... .................................... . .. . .. . . . ......... . .. .. . ... . ... .. . .. .... . . . .. . .. ..... . .. .. .. .. . . . .. . ....... . .
lowQualScore : 0 000 77777 0 4 222222222222222222222222222222222222 666666666 11 11111111 11 555555 66666666 00 3 11111111 0000000 1 77777777777777777777777 66666666 9 9 88 9 9 33 444 9 3333 44 5 7 9 22 7 1 7777777777777777777777777777777777777777777777777777777777777777777777 8 88 55 55 0 9 9 3333333 2222222 5555555 0 9999999999999999 88 2 999999999 2 11111111 5 888 00 0 6 88 000 0 6666666666666666666666666666666 99 0 333 00 1 0000000 1 3 7 7 7 11 1 7 1 1 7 9999 7 0 0 000 0 99 7 9999 444444 66666666666666666 4 7 4 7 77 777 00 66 0 0 0 00 22 3333 7 6666666666 0 0 333333333 888 777 3 7 7 7 77777 8 777777 0 0000 7 7 00 7 0 0 0 1 0 99 7 7 7 3 0 000000 8 00000 2 0000000 8 7 7 7 333 000000000000000000000000000000000000 4 99 0 99 0 0 1 555555555 0 99 99 0 888 0 888 66 3 11 4444 8 4 8 00 0 77 00000 3 77 55 55 55 7 0 0 55 0 0000000 1 4
consensus : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GAC-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CC--C--ACTTTCAAAA-GT-GGG---G-C-GGG-G--A--TGC-------CCC-C-----CCAC--C----C--CCGGC-TCC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCG-TGAT--GTATAATGATCAATTTCTCATGCAATGTAGATAT------CTTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-C-A---AATATGTC--ATG-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTTGAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAA-TAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------AC--------------------TTT-GAAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
Reference ( family-189 ) : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GAC-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CC--C--ACTTTCAAAA-GT-GGG---G-C-GGG-G--A--TGC-------CCC-C-----CCAC--C----C--CCGGC-TCC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCG-TGAT--GTATAATGATCAATTTCTCATGCAATGTAGATAT------CTTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-C-A---AATATGTC--ATG-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTTGAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAA-TAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------AC--------------------TTT-GAAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
gi|1 : AAGCAAAACGAC-AAAAAGCA-CA-T------T------GAGTCGA--CT--CT--G-----TTTTTGAAGGGGAGG--AGGGGGGGGGGAGGG--GGGG------CA-----A--GC--AA-AAAAAATTTAA-------AA-AA---------------A-----CTATGGA-------CA-T-TGT--T-CTTGTAATTAC-CT---A-GACT----AGACA--TG-CATTATAGC-TTG-AAAAA--TAA-TT-GAT-------------------AA-A-----------------ATA----T---------------------TCTG----CCCCCCCCCCC--TC--C--ACTTTTAAAA-GT-GGG---G-CGGGG-G--A--TAC-------CCCAC-----TCA---C----C--CGGGC-TCCTTATTACCGT-A--------CGCCCATGGCGTGTTAAAATCAAGTTA-AGACGGGAATTG-AGGTTTTTCTTTC-AAGA---------------------CA-TGAT--GTATAATGATCAA--TCTCATGC-ATGTAATTA--------CTGGCA-GT-T-T-ATCCGA-CA-TTTC-ATC----CACACCTTC-C-A---AATCTGTC--ATGTTACC------GGTCT------TGCA-------TGTTACACGATTGA-TTACTAT-GAGATTTAGA-GCACATTATTGAAAAGACCGGGG--GGGGGGTGGTTAG-------GT-T--GACTTC--TGTGCATGTAGGCCTA----A-AGTAATATACTTTTAA-TAATGCATA-----T---
gi|1 : CAAA-AATGGCGCGT---TAA-TTATGCATAAGTTTT---AAGAATT-------GGGAAGGGATGTAT-GAACTTTGGTA-----CCC-ACT--GTATA--TAGAT-CCCT-AG-CATTTGGTCATTGAAA--TGG-AGGA-CAGGCTGATGTATAT--TCGCCACTTTAAA-ACTTTTGATTTATCCATAT------AAATAT-----AAACAGTTCAGGCAAAA-------ATCATAG-CCTTATCAAAATATAATAGCCATTA-G-ATACAACTTA--------------AC--------------------TTTTGAAAA--T-GCTGAGCC-TC-A-CCTTT---------TGATT-GGGTTCTCGATATT--CGAATAAGGCTATTTGTTCCGTTAAAGAAAG--A---ACGAAATAAAGTTATAAA----TGATT-AAAAAAAATCTTA-GCTCGTTTGACTGTTTATTTAC-----CATAACAG-AA--TTCTACTTGA--AAATATATTAACC-TGAATTGACCGCGCGGCGCGCCGGTCGCGCCGAAT-ACAACTttaatttaatgaagtgatatgaaattattttgtaaacacaaaaatggcgcgttaattatgcataagttttaagaattgggaagggatgtatgaactttggtacccactgtatatagatccctagcatttggtcattgaaatggaggacaggctgatgtatattcgccactttaaaacttttgatttatccatataaatataaacagttcaggcaaaaatcatagccttatcaaaatataatagccattagatacaacttaacttttgaaaatgctgagcctcaccttttgattgggttctcgatattcgaataaggctatttgttccgttaaagaaagaacgaaataaagttataaatgattaaaaaaaatcttagctcgtttgactgtttatttaccataacagaattctacttgaaaatatattaacctgaattgaccgcgcggcgcgccggtcgcgccgaatacaact
gi|10 : aagcaaaacgacaaaaagcacattgagtcgactctgtttttgaaggggaggaggggggggggagggggggcaagcaaaaaaaatttaaaaaaactatggacattgttcttgtaattacctagactagacatgcattatagcttgaaaaataattgataaaatattctgccccccccccctccacttttaaaagtggggcgggggataccccactcacccgggctccttattaccgtacgcccatggcgtgttaaaatcaagttaagacgggaattgaggtttttctttcaagacatgatgtataatgatcaatctcatgcatgtaattactggcagtttatccgacatttcatccacaccttccaaatctgtcatgttaccggtcttgcatgttacacgattgattactatgagatttagagcacattattgaaaagaccggggggggggtggttaggttgacttctgtgcatgtaggcctaaagtaatatacttttaataatgcatatttaatttaatgaagtgatatgaaattattttgtaaacaATTTG-TCAT--AAAAGTGG-AG-A-CCA-CGG-TATGTAT--TC
gi|11 : aatgttgaaggagcgaaatgggggtttcacatgggccttggcgtgagtaagttagatatattgaaggaataaataacatgagcaatttgagtataaatttaaaagtacataatatttggggaaaaaatctcacggctgattgatcgatataagacactggctcatcctttaccttacatAT-CTTTATCAAA-TATAATAGCCAT-G-C-ATAGAATGT-----------------------------------------GAAAT--T-GCTGAGCT-TCGAACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTTTGT---CTGT-AAGAAAAGCAA---GCGATA-AA-GCTA--AAAGGTTAATTTAAAAAAAACCC-A-TCTTATTTGAGTGTTTATT-ACATTACCATAACAA-AA--TTATACT--G--A-------TAA------ATAGA-CGC-CGG-A-------CGCGCCAAAT-ACAACTtcgca
gi|12 : TACTAAA-TATAATAGCTAA-AAG-ATATAAAGTATCACTAGAATATTGAC--------------------TTT-AAAAAA-T-TCGGAGCC-TC-AAACGTT---------TGAT--------------------AA-AAG-ACACTT--------GAGAAAAACAAAAAGCGATG-AA-GCTG--AA----AGGTT-ACGAAAG-TCA-A-GATCGTTTGAATG--TAT-------------------A--TTCTACT--G--AAA---ACTGA-CATA-ATTGA-CGCGCGA-T-------CGTTCCGAAC-
gi|13 : AAAA--T-GCTGAGCCTCC-AACCTTTAGACTATTTTGATTTGGG--CTCGATATT--CGAATAAG-CTATTT---CCAT-AAAAAAAGCAA---GCGAT--AAAGCTA--AA----TGATT-GAAACAAATCG-AGGCTCCTTTGAGTGTTTATT--C-----CATAACAGCAAC-TTCTACT--GGAAAAAATA-TAACCATG-ATT--------GG-G-------TGCGCC-AATAACAA
gi|14 : -GATT----AGTA---TT-CATTATAGC-TTG-AAAAA--TACTTT-GAC-------------------AA-a
gi|14 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtCCCTCTCC--CC--C--ACTTTTGAAA-ATGGGG---G-C-AAA-ACTA--TGC-------CCC-C-----CCCC--C----C--CCtaagggggggggaggggggggggggggggggggcatagttttgcccccattttcaaaagtgggggagagggtgaattgcccacacacccttcccc
gi|14 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtgattagtattcattatagcttgaaaaatactttgacaataagggggggggagggggggCC--CC--C--ATTTTCAAAA-GT-GGGGGAG-A-GGGTG--AATTGC-------CCA-C-----ACAC--C----C--tgaattgcccacacacccttcccc
gi|15 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtgattagtattcattatagcttgaaaaatactttgacaataagggggggggaggggggggggggggggggggcatagttttgCACGCAAAA-AATTAAAAGGCA-CA-TAG----T------CA--C----TGATCT--G-----TTTT---------GA--AAGA--------GGG--GG--------CATTCTTA--AA--AA-A--------AATAAGGAGAA-AAGGC------------A-----C-AGAGAC-------A-C-CGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTttcccc
gi|16 : catgcaggataggcataggactgggacaaacttctaaacaatgtgaaaaaaA-----A--TC--AA-A--------AT-------AATAA---------------G-----C-GTAAAAAA----CA-C-TGT--T-C-TGTAACTA--CT---T-CACT----AGTAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GAC-------------------AATAGGAGGGGGACAAAAAC-ATA---GT---------------------TTTG---------CCTCCT--CC--T--ACTTTCAAAG-GT-GG--------GGG-G--AT-TAT-------CCC-C-----CCA--------C--CCGGC-TCC---------A-A--------CGCCCAT-G
gi|17 : ctgtaC--AA-A--------AA-------TA-AA---------------G-----G-ACAAAC-----------TGTG-T-C-TGTAAATA--CT---AAGACT----GATAA--TT-CATTACAGC-TTT--AAAA--TAC-TT-GAC-------------------AA-A-----------------A
gi|18 : aaaatgtgtataAAT-A-A-GTTCATATGGGTGTTTATC-AT-----CAGAGCA--AATTTTCTACT--G--AAATgataggggggggggcataacatcctttcatgttttgcccctcccttttcaagtgggggcaaatcccatgcccacg
gi|2 : attcaattagtaattttagcatacatttacataaataattgataaaattatgacagtaaattggtttgagacattggtggagggaaggtAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCAACA-T------T------AA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAC------CA-CATGT--T-C-TGTAATTA--CT---A-GACT----AGTAC--GG-CATTATAGC-TTG-AAAAA--TAC-TTAGAT-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CCGTC--ACTTT-AAAA-GT-GGG---G-C-GGG-G--A--TAC-------TCC-C-----TCAC--C----C--CCGGT-TC----------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AG-CGGAGA-T--AGG-TTTTCTTACTAAGAACATTGCGGTC---TACTGAGCA-TGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATAT------CTTGTCA-GT-T-TAATC--A-CATTTTC-ATC---ACAC-TCTTC-C-A---AATATGTC--ATG-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTATCGAGATTTAGA-GCA-ATTA--TGAAAGAGCGGGGA-GGGGGGGGGGGGGGGGGGTAGT-T--GATTTCGGTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAA-AT-----AAACAGTTTAGGCAGAA-TACTTTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-AT-CAGCGTA--------------AC--------------------TTTGGAAAA--T-GCTGTGCT-CC-AACCTTT---------TGATT-GGGC-CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCT-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA--GCGCGG-G-------CGCGCCGAAT-ACAA-TAGcaaagtattgagagtactgt
gi|20 : ctaataAGCAA---GCGATA-AA-GCTA--AA----TGATT-AAACAAAATCT-A-GCTCGTTTGAGTGTTTATT-CC-----CATAACAA-AC--TTCTACT--G--AAAAATATTAACCATG-ATT---------G-G-------TGCGCCCAAT-ACAACTAG
gi|22 : TAGAC-------A-C-TGT--T-C-TGTAACTA--CG---A-GACA----AGTAA--TT-CATTATAGC-TTG-
gi|23 : ct-AAAACCA--AA----CGGCT-AAGAAAA-TCA-A-GCTCATTTGAGTGTTTATT-AC-----CATAGCTG-AA--TTCTACT--G--AAAAACATTGTCCACA-ATTGA-AGCGCAG-A-------CGCGCCGAAT-ACTACTgcacttttttataataagggggggggaggggggcatagttacctggctccagtgtacgcccatg
gi|24 : c-T------T------GA--C----CTA-CTCTG-----TTTT---------GA--AGGG--------GGGTGGGGG------CA-----A--GC--AA-A--------AA-------AA-AACCATAATACAAACAAA-----C-ATGGAC-------A-C-TGT--T-C-ATTAATTA--CT---G-GACT----AGTAA--TG-CATTATAGC-
gi|25 : T-GGC-------------------AA-A-----------------ATAATAGT---------------------TTTGCCCCCCCCTCCCCCC--CC--CCGACTTTC--AA-GG-GGG---G-
gi|26 : gaagttgtaactgaaaaatactttacatacaacaggggtaggaggggggtggggCCCC--TC--CGAACGTTCAAAG-GT-GGG---T-G-GGG-G--A--GTC-------CCT-C-----CC---------------GC-TCC---------C-A--------CGCCCAT-G
gi|27 : tgtaactggaaaaatactttaacaatacagtgggagggcgcaaatcaaag-A-----------------ATA---CT---------------------TTTGCCACCCCCC-----C--CC--C--GCTTTTAAAA-GA-GG--------GGG-G--T--TAC-------CCC-C-----CC-C--CTTTTC--CGGGC-TCC---------T-A--------CGTCCAT-G
gi|28 : gttacttgaccaaaaaaaaggggggggtGCAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GACGATTGGTGGGGGAAGGCAGAA-AC----------------ATA---AT---------------------GTTGCTCCCCCCCCCC
gi|29 : ------CA-----A--GC--AG-A--------AA-------GG-GGGC-------------A-----C-ATAGAC-------A-C-TGT--T-T-AGTAACTATACT---A-GACTGTCTAGTAA--TT-C------GT-TTG-AAAAA---AC-TT-GAtgataaatgaaattgccaccccggttc
gi|3 : AT-AAGT-TGGCAAGCAAAA-GAC-AAAAGCAA-CA-T------T------GAA-C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAT------CA-C-TGT--TTC-TGTAATTA--CT---A-GACT----AGTAC--GG-CATTATAGC-TTG-AAAAAAATAC-TT-GAT-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCCACCCGTC--ACTTT-AAAA-GT-GGG---G-C-GGG-G--A--TAC-------TCC-C-----TCAC--C----C--CCGGA-TTC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGCCGGGA--TA---G-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCA-TGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATAT------CTTGTCAAGT-TGTAATC--ATCATTTTCTATC---ACAC-TCTTCGC-A---AATATGTC--ATG-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTAT--GAAAGAGCGGGGAGGGGGGGGGGGGGGGGGGGTAGTAT--GATTTC-GTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGTTGAACTT-GGTA-----CCCGACTTGG--TA--TAGATCCC-T-ATTCATTTG-TCAT-G-AAAGTGG-AG-ACCAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAATTAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAGCGTA--------------AC--------------------TTT-GAAAA--T-GCTG---T-CC-AACC-TT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CGGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----T-AGT-ATAAAAAATCT-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAA-CATG-ATTGA-CGCGC-G-G-------CGCGCCGAAT-ACAACTttcgtgtaaaaacatctaaatcata
gi|30 : GACACGCAAAA------AAGGGCA-CA-T------A------GT--C------A-CT--GATTTATTTT---------GAAGAGGG--------GGG--GGGG------CA-----T--TCTTAA-G--------AA-------AA-GGC--------------A-----C-ACAGA-------CA-C-TGT--T-C-TGTAA
gi|31 : aatgtgacaaAAA-GG-GGG---G---GGG-G--G--TGCAGTTGTATCC-C-----ATATA-T----C--CCGGC-TCC---------T-A--------CGCCCAT-G
gi|32 : aaacattattttgccttcttacccctttctatgagggCCC--TC--T--CTTTTCAAAAAGG-GGG---G-G-GGG-G--A--TGC--------------------C--T----C--CCGGT-TCC---------T-A--------TGGACAT-G
gi|33 : agaaaaaaaggggggaggcaataacttacttttg-C-A---AATATCTC--ATG-TACC----GGGGTCT------TGCATACA---CGTC------TTGATTTACTAT-GGGCTTTAGA-GCA-ATTATT-GAATGAG-GGGG--GGGGGGGGGGgaa
gi|34 : CCCCCC--CC--C--CTTTTCAAAA-GT-GGG---G-A-GCA-A--T--TGC-------CCC-CA----CCCC--C----CTTCCGGC-TCC---------T-A--------CGCCCA
gi|36 : aaaacatactattatactattgAGTG-TGATCCGTATAAGGACCAAC--CTCATTCA-TGTGGGCAT------C--GACA-GT-T-TT-TCAGA-CATTTTC-GGC---A-AT-CCTTT-C-aga
gi|37 : ctttaaCCCCCC--CC--C--CCTTTCAAAA-AG-GGGTGGG-T-GGG-T--AATTGC-------CCC-CGTGCCCCAC--C----C--CCGGC-TCC---------T-A--------CGCCCAT-G
gi|39 : ttgCCCCCCCCACACA--CA--C--ACTTTGGAAA-G--GGG---G---GGG-G------GC-------CCC-A-----TCTC--C----C--TCGGC-TCC---------T-A--------CGCCCAT-Ga
gi|4 : T----AGTAA--TG-CATTATAGC-TTG-AAAAA--TAA-TT-CAT-------------------AA-A-----------------ATA---TT---------------------TCTGCCCCCCCCCTCC------------ACTTTTACAA-GT-GGG---GGC-GGG-GG-A--TAC-------CCC-C-----TCAC--C----C--C-GGC-TCC---------T-ATACCGTGACGCCCAT-GCGTGTT--AATCAG--TA-AGACGGGAA-TG-AGG-TTTTCTTA------ACA------------------CG-TGAC--GTATAATGATCAATC-CTCATGCAATGT-GATAG------TTTGTCA-GT-T-T---TCGA-CATTT-C-ATC---ACAC-C-TTC-C-A---AATCT-TC--ATG-TACC----GGG-TCT------TGCAATGTACACGTT------TTGATTTACTAT-GAGATT-AGA-GCA--TTATT-GAAAG--CGGGG--GGGTGGGGGTG-------TAGT-T--GACTTC-GTGTGCATGTA-GCCTA----A-AGTAG---------AA-TAATGCATA-----T---at
gi|4 : ACCACATAAT--GGCGC---TAAAT-ATGCATA-----TT--AAGA---CATT---GGGAAGGAGGATGT-TGACT---GTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGGAAG-A-CAG-C---TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATCC-TAC------GAATAT-----AAACAGTTTAGGCA-AA-TA------TATATAGCTTACCAGA-TATAATAGCCAT-A-G--TACAACGTA--------------AC--------------------TTT-GAAAA--TAGCTGA--C-CC-AACCTTT---------TGATT-GGG---TCGATATT--CGAATAAGCCTATTT---CCGT-AAGAAAAACAA---GCGAT--AAAGCTA--AA----TGA-T-GAAAAAAATCT-A--CTCGTTTGAGTGTTTA-T-AC-----CATA--AG-AA--TTC-ACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-GC------CGCGTCttaatttaataatgatatgaattatttgtaaccacataatggcgctaaatatgcatattaagacattgggaaggaggatgttgactgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctg
gi|40 : tagtaatgcattatagcttgaaaaataattcataaaatatttctgccccccccctccacttttacaagtgggggcgggggataccccctcaccccggctcctataccgtgacgcccatgcgtgttaatcagtaagacgggaatgaggttttcttaacacgtgacgtataatgatcaatcctcatgcaatgtgatagtttgtcagttttcgacatttcatcacaccttccaaatcttcatgtaccgggtcttgcaatgtacacgttttgatttactatgagattagagcattattgaaagcgggggggtgggggtgtagttgacttcgtgtgcatgtagcctaaagtagaataatgcatatttaatttaataatgatatgaattatttgtaCCCCG--TC--C--ACTTTCAAAA-GT-GGGGA-G-C-GGGAA--A--TTT-------CCC-C-----CCTC--C----C--CCGGG-TCC---------T-A--------CTCTCAT-Gtg
gi|42 : CCCC--CC--C--CCTTTTGAAA-GT-GGG---G-----G-G--G--CGC-------CCC-C-----CC----T----C--CCTGC-TCC---------T-A--------CGCCCAT-G
gi|44 : -------------------AA-G-----------------ATA---GT---------------------TTTGCCCCTCCCC------------C--ACTTTCAAAA-Gtt
gi|45 : ggggggggggggcaaa-GGG---G-G-GGG-C--AATTGC-------CTC-C-----CCATGTC----C--CCGGC-TCC---------T-A--------CACCCAT-
gi|46 : gggAATATATTAACCATG-ATTGA-CGCGCGG-G------------CGAAT-ACAACTAG
gi|47 : GTGG-AG-A-CAG-CTA-TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATccaa
gi|48 : AGGCA-CA-TAGTCACT------GA--C----CT---T--------TTTT---------GA--AAGG--------GGG--GGGG------
gi|5 : AAATCAA-TGTGGCAAGCAGAA-CAA-AAAAGGCA-CACT------T------GA--A----CTA-CTCTG-----TTTTTGGACG---GG--GGGG--------GGG--GGGG------CA-----G--GC--AA-A--------AA-------GA-AA---------------AAAAGAC-ATAGAC-------A-C-TGT--T-C-TGTAAC-A--CT---A-GACT----AGTAA--TTGCA-TATAGC-TTGAAAAAA--TACTTT-GAT-------------------AA-A-----------------ATA---G----------------------TTTG-CCCCCCCCCCTTCC--TT--C--ACTCTTAAAA-GT-GGG---G-C-AGG-G--G--TGC-------CCG-C--------C--C----C--CCGGCTTCC---------T-A--------CGCCCA--GC-TGTT---ATCAA--TACAGACGGGAA-TGCAGG-TTTTCGT--TAAG-ACATG-TGG-TCTATACTGACAGATGAT--GTATAATGATCAAATTCTCATG---TGTAGATACCATGTACTTGTCA-GTCT-TAATCCGA-CACTTCC-ATCTCAGCAC-CTTGC-CAA---AATATGTCATATG-TACCA---GGGGTCTGTGCTGTACA-------CG-T------TTGATTTACTAT-GGGATTTAGAGGCA-ATTA-TTGAAAGA------------GAAGGGGGGGGGGGTAGT-TTGAACTTC-ATGTGCATGTAGGCCTA----A-AGTA----------AA-T-ATATATA-----T---g
gi|5 : GTTGGGCGC---TAA-T-ATGCATA-----TTAAAGGGACCCACCTGGGGGAAGGATTGGTT-GAAATT-GGTATGGATCCC--CCTGTT-GAAGTAAAT-AA-TAATTCATGT--TCAT-GAAAAtattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaacgttgggcgctaatatgcatattaaagggacccacctgggggaaggattggttgaaattggtatggatccccctgttgaagtaaataataattcatgttcatgaaaa
gi|50 : aaatcaatgtggcaagcagaacaaaaaaggcacacttgaactactctgtttttggacggggggggggggggcaggcaaaaagaaaaaaagacatagacactgttctgtaacactagactagtaattgcatatagcttgaaaaaatactttgataaaatagtttgccccccccccttccttcactcttaaaagtggggcaggggtgcccgccccccggcttcctacgcccagctgttatcaatacagacgggaatgcaggttttcgttaagacatgtggtctatactgacagatgatgtataatgatcaaattctcatgtgtagataccatgtacttgtcagtcttaatccgacacttccatctcagcaccttgccaaaatatgtcatatgtaccaggggtctgtgctgtacacgtttgatttactatgggatttagaggcaattattgaaagagaagggggggggggtagtttgaacttcatgtgcatgtaggcctaaagtaaatatatatattattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaac-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTT-ATTT
gi|6 : --GTATAATAATCTATTG-TCATATAGTGCAGATA-------CTGCCCA-GT-T-CA-TCTGA-AATTTT--ATC---TCAC-CCTTC-C-ATATAATGTACC--AAG-TACCAGCTAGGGTCT------TA----------------------------TAG-GAG---TATA-ACA------TTGAAAGAGCGAAT--GGGAGAGGAGGG
gi|6 : TA-----T---AAGA---CACT---AGGAAAGGATTCGG-G--TTT-AG-------CCTTATTTAGC--A--TA-------T-ATTT-TTTG-AAAT--AAAAGTGG-AG-A-CCA-CTG-TGTGTATCCTCGC-ATCT-AAACACGT--GATTTAT---TAGGGAAAAAAATACCAAACAAACAGTTAA---AGAG-TAA-ATAT-ATAT-CTTTATCAAA-TATGATAGCCAA-A-ATATACAAAGTA--------------ACATTGTATGGAGTTTGATGACTTT-GAAAAATT-GCTGATCC-TC-GAACTTTAATTC----TGATT-GGA--CTCGATATTTGTGGTTCAG-TTATTT---CCGT-cgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaaagtttgacggttgattattataagacactaggaaaggattcgggtttagccttatttagcatatattttttgaaataaaagtggagaccactgtgtgtatcctcgcatctaaacacgtgatttattagggaaaaaaataccaaacaaacagttaaagagtaaatatatatctttatcaaatatgatagccaaaatatacaaagtaacattgtatggagtttgatgactttgaaaaattgctgatcctcgaactttaattctgattggactcgatatttgtggttcagttatttccgtttataaaaaacgaatcaaat
gi|7 : gtataataatctattgtcatatagtgcagatactgcccagttcatctgaaattttatctcacccttccatataatgtaccaagtaccagctagggtcttataggagtataacattgaaagagcgaatgggagaggagggcgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaaagtttgacggttgattatA-------AA-AA---------------A-----------AC------CA-C-TGT--T-C-TGTAACTA--CTTTCA-GGCT----AGTAATGTT-CATTATAGCTTTG---AAA--TAC-TT-GAC-------------------AATAAGGAGGCGGACAAAAACATA---GT---------------------TTTG-----CCCCTTTCCT--CC--T--ACTTTCAAAG-GT-GG--------GGG-G--AT-TAT-------CCC-C-----CCA--------C--CCGGC-TCC---------CAA--------CGCCCAT-Gttataaaaaacgaatcaaat
gi|8 : catatatagactgatttttaatgaggagggagcacacttctaaatgtggcaaagcaaccaaaaaaagggggggcacatgtagagcactttggttgtgtgtgtgttgtgtggtgtgcgtgtaaactgtaatcaaaatatagcgtA-A--------AA-------GC-AC---------------A-----T-ATAGAC------CTTC-TGTATT-T-TGTAACTA--CT---A-GAAT----AGTAA--TT-CATTATAGC-TCG-AAGAA--TAC-TT-GA--------------------AA-G-----------------A-A---GTGGAGGTTGGGGAAAAACATAATTTG-------CTCCCCCT--CC--C--ACTTTCAAAA-GT-GGG---A-G-GGG-C--AATTGC-------CAC-C-----ATGC--C----C--CCGGC-TCC---------C-A--------AATCCA
gi|9 : caagacactgatctcatttgaatgcgggggagtgggttctaaatgtgacaaacaaaacataggatAAT-AT-G-TAACAAGCAAAA-GGT-AAAAAAAA-AA-T------CCATAAAAA--CAGTGCTG--T--G-----TTTT---------GA--GGGG--------GGG--GGGGGACTTCCA-----AATGT--GATA--------AG-------CA-GAGGGGC----------A-----C-ATAGACACTGTTCA-C-TGT--T-C-TGTAACTA--CT---A-GACTGGCTAGTAA--TT-CGTTATAGC-TTG-AAAAA--
blockSeqs : C GT AATT A C CCATAAAAACAGTGCTGTG TGGACG AG . TG GACTTC TTCTTA TT T . TAAGGAG T CCATAATACAAACAAAC CACTGTTC T A AT T . TA TTC A GTCT TG G T A AA T A CGATTGGTGGGGGAAGGCAGAAACATAAT C AC GT CG T A G GGAGA TGAAT AGTTGTA . GTGCCCCACC TT T . A TACCGTGA . A . C C A GCA . ACTAAGAACATTGCGGTCTACTGAGCA CC A TTT AA CCATGTA A C G AA A T T TCAG . G A TAT G AT . AGCT GTGCTG ATGTACACGTT T C A G A TT GC AG G G A TG GG CCAC T GGCGCGT A T AGTTTT ACT TGG T A . TGGAT G TGAAG G CCC A . G A . C . . CC . . C T . GGAAAA CAAAC G TACTTT T A . . AG ACATTGTATGGAGTTTGATGAC G AT A AG T G AGACTATTT T C TG C . . AAA A A . AGGT T C G A ATTAC A GC TT . GA A C . C . C A
blockSeqs : . TG GAC . . AGTCACTGATCTG . . . . . AAT . . . . . AAAAGAC AAAC . . G . . . . . GGCT . . . . . T . AAGAAGTGGAGGTTGGGGAAAAACATAA C . GT GA C . . TGGGT ACTA . . CCCCTTTT . . . . . . A . . A A GA . TAAGACATGTGGTCTATACTGACAGA . A TTT AA T . . . AA C . . A . . . . G . . A . TACACGTC T . A . A TT GC A G G . . G CCAC . TGGGCGC . A TTAA ACT . . A . . G TTA G CC . . G . . . . . . . . . T . . . G TTACTT T . . . AT TCACTAGAATATTGAC . A . AG . . AATTC . . . . . . . G A . . . A . A . A A C . . T C . C . . .
blockSeqs : . G GAC . . AGTCACTGATTTA . . . . . A . . . . . GGGGCAC CC . . . . . . . . . . . . . . . . CAATAAGGAGGCGGACAAAAACATAGT C . . . C . . GAGC TAAT . . CCATGTC . . . . . . A . . A A A . ACTAAGAACATTCGGCTACTGAGCA . A ATT AA T . . . AA C . . A . . . . C . . . . CGTT T . C . A TT GC . G G . . G CCAC . TGGGCGC . . TT ACC . . G . . G TTA G CC . . G . . . . . . . . . T . . . G TAAAT T . . . C AC . . . AG . . . . . . . . . . A A . . . G . A . G G . . . T C . A . . .
blockSeqs : CAA . . AGTCACTGACCTT . . . . . A . . . . . GGCAC TC . . . . . . . . . . . . . . . . CAATAGGAGGGGGACAAAAACATAGT C . . . C . . GGC CAAT . . ATATAT . . . . . . . . . . . A . AACACG . A TTG AG T . . . T T . . A . . . . G . . . . CGTT T . A . A TT G . G . . . A . . TGGGCGC . . T . . . A . . T TA A AA . . G . . . . . . . . . C . . . . TA . . . . G AC . . . TG . . . . . . . . . . A A . . . A . C . A A . . . A C . C . . .
blockSeqs : GGT . . TGACCTACTCTG . . . . . A . . . . . GCAC CC . . . . . . . . . . . . . . . . CAAAATAATAGT C . . . C . . GC CAAT . . ACCCCC . . . . . . . . TC A G . . . A . . . A . . . . A . . . . CGT T . A . . T C . . . . GGCGC . . T . . . . . . . CA . . . . . . . . . . . . . . . . . . G AC . . . AT . . . . . . . . . . A A . . . T . A . A G . . . A C . C . . .
blockSeqs : . . . TGAACTACTCTG . . . . . A . . . . . CAC CC . . . . . . . . . . . . . . . . TAAAATAGT C . . . T . . GC GAT . . CCCCC . . . . . . . . C . . . . . . . . . T . . . . . . . . . . . . . . . T . . . AG . . T . . . . . . . . . . . . . . G . . . . A . . . . . . . . . . . . . . . T . A . G G . . . T C . C . . .
blockSeqs : . . TGAACCTACTG . . . . . A . . . . . GC C . . . . . . . . . . . . . . . . TAAAATAGT C . . . C . . TG GGA . . ACACC . . . . . . . . A . . T . . . . . . . . . . . . . . . . . . . . . . . A . A . A G . . . T . . . . . .
blockSeqs : . TAACCTACTG . . . . . T . . . . . GG C . . . . . . . . . . . . . . . . TAAAATATT . . . . C . . GC AAA . . TCACC . . . . . . T . . . . T . . . . . . . . T . . . . . .
blockSeqs : . G . . . . . AC C . . . . . . . . . . . . . . . . TAAAATAG . . . . C . . GG GAT . . TCACC . . . . . . T . . . . . . . . . . . . . .
blockSeqs : . . . . . AC C . . . . . . . . . . . . . . . . . . . . G . . GA GA . . TCTCC . . . . . . .
blockSeqs : . . . . AT C . . . . . . . . . . . . . . . . . . . . T . . GG GA . . TCACC . . . . . .
blockSeqs : . . A C . . . . . . . . . . . . . . . . . . C . . GC GT . . CCTCC . . . . . .
blockSeqs : C . . . . . . . . . . . . . . T . . AG GA . . ATGCC . . . . . .
blockSeqs : . . . . . . . C . . G GG . . CCA . . . . . .
blockSeqs : . . . . . T . . G GA . . CCT . . . . . .
blockSeqs : . . . C . . G AT . . CCA . . . . .
blockSeqs : . . . C . . . GG . . CC . . . . .
blockSeqs : . . . . . . . GG . . CT .
blockSeqs : . . . . . . . G . . CC .
blockSeqs : . .
blockSeqCons : GAC** ********* ******** ******** AC********************* ** GG***** CCACC*********** ********* A** ** A* GA* ATAAGAACATCGGCTACTGACG********* TTT AA T****** AA A*** CGTT************* A* TT* G* CCAC TGGGCGC*** TA**** CC** G* TAT**** ** *** A* ** N* A* ** C* *******
originalCons : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GAC-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CC--C--ACTTTCAAAA-GT-GGG---G-C-GGG-G--A--TGC-------CCC-C-----CCAC--C----C--CCGGC-TCC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGCG-TGAT--GTATAATGATCAATTTCTCATGCAATGTAGATAT------CTTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-C-A---AATATGTC--ATG-TACC----GGGGTCT------TGCA-------CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTTGAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTC-GTGTGCATGTAGGCCTACCACA-AGTNGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGT-TA--TAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAA-TAC-TTATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------AC--------------------TTT-GAAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
finalCons : NNNNNNAAAT-AA-T-TGGCAAGCAAAAGAC--AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AAAC---------------------ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GAC-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CC--C--ACTTTCAAAA-GT-GGGGG-----GGG-G--A--TGC-------CCC-CCCACC-----------C--CCGGC-TCC---------T-A--------CGCCCAT-GCGTGTTA--ATCAA--TA-AGACGGGAA-TGA-GG-TTTTCTTATAAGAACATCGGCTACTGACG---------TGAT--GTATAATGATCAATTTCTCATGCAATGTAGATAT------CTTGTCA-GT-T-TAATCCGA-CATTTTC-ATCA---CAC-CCTTC-C-A---AATATGTC--ATG-TACC----GGGGTCT------TGCACGTT-------------TTGATTTACTAT-GAGATTTAGA-GCAA-TTATT-GAAAGAGCGGGG--GGGGGGGGGGGGGGGGGGTAGT-T--GACTTCG-TGTGCATGTAGGCCTACCACA-AGTTGGGCGC---TAA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATGT-GAACTT-GGTA-----CCCGACTTGGTA----TAGATCC--T-ATTCATTTG-TCATG-AAAAGTGG-AG-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAATAT-----AAACAGTTTAGGCAGAATAT----ATTATAT-CCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------AC--------------------TTT-GAAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--CTCGATATT--CGAATAAG-CTATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATTA-C-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGAC-GCGCGG-G-------CGCGCCGAAT-ACAACTAG
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TCAATGCATGATTTAGATCCATTCTCATTGCATGTATATAATGAAGATACTGACCAGTTTAGCAAAAGTTCCAAGTATAATAAGTACCAGGGTCTTATACTGACAGTTATGTTGAAGGAGCTAGTAAAGGGGATGGGAGCTCTGG
Unaligned ( gi|21 ): CACCGAGTAATAAACAGGCAACTGAATGCTATGTATTATGAACAGACAAATGAATGTTTGTAATAAATAGACAAATATGTTTTATAAAAATATTGAATAATTCGTATTTCAGC
Unaligned ( gi|35 ): ATAGGGAGGGGGATTACTGGCTTTAAATGGGCCCAGGAGAAAATATTTTTTAATAACAATTGAGCGTAACTTATGATAATTGATAAA
Unaligned ( gi|38 ): CAATGAACATGCAGTGCAGATACAGCCCAATTTATCTGACAATTTATCTCGCCTTTCCGTGTATTGCAAGTATCA
Unaligned ( gi|41 ): TAATTTGTTTTGATTGGGGGGGGGGGGGGGGGGTTGGTAAAAAAAAAAAAAGACAGAG
Unaligned ( gi|43 ): GAGGTGGATGGACTTCTAATTATGCCCCACCCGGCTCCTACGCCCATGT
Unaligned ( gi|49 ): AGCCCCTTCCACCTTAATATTATTTATGTAGCTAAAA
Unaligned ( gi|51 ): CCCCCCCCCTTTGATAGTGGTATTTAGAGGG
Alignments
lowQualScore : 1 111 11111 444444444444444444444444444444444444 333333333 11111111 111111 11111111 11111111 1111111 44444444444444444444444 22222222 1111 5555555555555555555555555555555555555555555555555555555555555555555555 1 11111111 11111111111111111 111 11 111 8888888888888888888888888888 11 2222222 1111 1 1111 111 22222 2222222222222222222222222222222 11 111111111 11 11 1 1 111111111 111 22222222 1 1111 11 222222 222222 3333333 11 88888888888888888888 11 333333333 1111 1 111111111 1111111
lowQualScore : 0 777 22222 5 4 666666666666666666666666666666666666 000000000 66 66666666 66 111111 00000000 55 3 22222222 0000000 3 00000000000000000000000 33333333 2 2 66 2 2 77 555 2 1111 33 2 2 2 44 6 3 6666666666666666666666666666666666666666666666666666666666666666666666 0 22 55 55 1 6666 555 666 33333333 33 55555 2 55555555555555555 22 2 888888888 2 88888888 2 111 11 8 5 88 222 8 9999999999999999999999999999 999 77 5 22 55 0 7777777 0 0 5 5 9999 0 5 7 5 3333 5 5 5 000 3 77 5 44444 8888888888888888888888888888888 1 5 22 5 00 5 5 1 777777777 4 8 11 11 0 2 5 777 999999 5 5 777777777 999 111 0 6 1 6 44444444 2 3 1 0000 6 5 00 5 5 5 5 5 66 5 5 5 9 8 333333 000000 3 0000000 11 3 5 5 777 00000000000000000000 5 5 11 5 22 5 5 0 222222222 5 1111 66 555 888 5 888 4 2 66 9999 4 0 55 4 111111111 44 99 55 55 4 5 4 66 4 7777777 0 4
lowQualScore : . ... ..... . . .................................... ......... .. ........ .. ...... ........ .. . ........ ....... . ....................... ........ . . .. . . .. ... . .... .. . . . .. . . ...................................................................... . .. .. .. . .... ... ... ........ .. ..... . ................. .. . ......... . ........ . ... .. . . .. ... . ............................ ... .. . .. .. . ....... . . . . .... . . . . .... . . . ... . .. . ..... ............................... . . .. . .. . . . ......... . . .. .. . . . ... ...... . . ......... ... ... . . . . ........ . . . .... . . .. . . . . . .. . . . . . ...... ...... . ....... .. . . . ... .................... . . .. . .. . . . ......... . .... .. ... ... . ... . . .. .... . . .. . ......... .. .. .. .. . . . .. . ....... . .
lowQualScore : 0 000 77777 0 4 222222222222222222222222222222222222 666666666 11 11111111 11 555555 66666666 00 3 11111111 0000000 1 77777777777777777777777 66666666 9 9 88 9 9 33 444 9 3333 44 5 7 9 22 7 1 7777777777777777777777777777777777777777777777777777777777777777777777 8 88 55 55 0 0000 222 000 22222222 55 00000 0 33333333333333333 88 2 999999999 2 11111111 5 888 00 0 6 88 000 0 0000000000000000000000000000 888 99 0 33 00 1 0000000 1 3 7 7 4444 1 7 1 7 9999 7 0 0 000 0 99 7 44444 1111111111111111111111111111111 4 7 99 7 77 0 7 7 444444444 3 0 00 22 0 5 7 444 666666 0 0 222222222 888 777 3 7 7 7 22222222 5 3 0 0000 7 7 00 7 0 0 0 0 99 7 7 7 3 0 000000 888888 2 6666666 88 7 7 7 333 00000000000000000000 7 0 99 0 99 0 0 1 555555555 0 2222 99 111 888 0 888 4 8 11 4444 4 8 00 0 111111111 77 55 55 55 7 0 0 55 0 0000000 1 4
consensus : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GAC-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CC--C--ACTTTCAAAA----GTGGGG---G---GGG-G---A--T-GC-----CCC-C-----CCAC---C----C--CCGGC-TCC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGC--ATGAT--GTATAATGATCAATTTCTCATGCAATGTAGATAT------CTTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-C-A---AATATGTC--ATG-TACC----GGGGTCT------TG-------CA----CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTG-AAAGAGCGGGG---GGGGGGGGGGGGGGGGGGTAGT-T--GACTTCG-TGTGCATGTAGGCCTACCACA-AGTTGGGCGC---T--AA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATG-TGAACTT-GGTA--------CCCGACTTGGT-ATAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGGA-G-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAAT-----ATAAACAGTTTAGGCAGAA-TACT-TAT-TATATCCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------------ACTTT-G-AAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--C-TCGATATT--CGAATAAG-C-TATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
Reference ( family-189 ) : NNNNNNAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCA-CA-T------T------GA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATAGAC------CA-C-TGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GAC-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CC--C--ACTTTCAAAA----GTGGGG---G---GGG-G---A--T-GC-----CCC-C-----CCAC---C----C--CCGGC-TCC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGACGGGAA-TG-AGG-TTTTCTTA-TAAGAACAT--CGG-C---TACTGA-C--GTGAT--GTATAATGATCAATTTCTCATGCAATGTAGATAT------CTTGTCA-GT-T-TAATCCGA-CATTTTC-ATC---ACAC-CCTTC-C-A---AATATGTC--ATG-TACC----GGGGTCT------TG-------CA----CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTATTG-AAAGAGCGGGG---GGGGGGGGGGGGGGGGGGTAGT-T--GACTTCG-TGTGCATGTAGGCCTACCACA-AGTTGGGCGC---T--AA-T-ATGCATA-----T---AAGAACTCACC---GGGAAGGAATATG-TGAACTT-GGTA--------CCCGACTTGGT-ATAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGGA-G-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAAT-----ATAAACAGTTTAGGCAGAA-TA---TAT-TATATCCTTATCAGA-TATAATAGCCAT-A-G-ATACAACGTA--------------------ACTTT-G-AAAA--T-GCTGAGCC-CC-AACCTTT---------TGATT-GGG--C-TCGATATT--CGAATAAG-C-TATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCN-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-G-------CGCGCCGAAT-ACAACTAG
gi|1 : AAGCAAAACGAC-AAAAAGCA-CA-T------T------GAGTCGA--CT--CT--G-----TTTTTGAAGGGGAGG--AGGGGGGGGGGAGGG--GGGG------CA-----A--GC--AA-AAAAAATTTAA-------AA-AA---------------A-----CTATGGA-------CA-T-TGT--T-CTTGTAATTAC-CT---A-GACT----AGACA--TG-CATTATAGC-TTG-AAAAA--TAA-TT-GAT-------------------AA-A-----------------ATA----T---------------------TCTG----CCCCCCCCCCC--TC--C--ACTTTTAAAA----GTGGGGC--G---GGG-G---A--T-AC-----CCCAC-----TCA----C----C--CGGGC-TCCTTATTACCGT-A--------CGCCCATGGCGTGTTAAAATCAAGTTA-AGACGGGAATTG-AGGTTTTTCTTT-CAA--------------------GA-C--ATGAT--GTATAATGATCAA--TCTCATGC-ATGTAATTA--------CTGGCA-GT-T-T-ATCCGA-CA-TTTC-ATC----CACACCTTC-C-A---AATCTGTC--ATGTTACC------GGTCT------TG-------CA----TGTTACACGATTGA-TTACTAT-GAGATTTAGA-GCACATTATTGAAAAGACCGGGG---GGGGGGTGGTTAG-------GT-T--GACTTC--TGTGCATGTAGGCCTA----A-AGTAATATACTTTT--AA-TAATGCATA-----T---
gi|1 : CAAA-AATGGCGCGT---T--AA-TTATGCATAAGTTTT---AAGAATT-------GGGAAGGGATGTA-TGAACTTTGGTA--------CCC-ACTGTAT-ATAGAT-CCCT-AG-CATTTGGTCATTGAAA--TGGA-GGA-CAGGCTGATGTATAT--TCGCCACTTTAAA-ACTTTTGATTTATCCATAT------AAAT-----ATAAACAGTTCAGGCAAAA-------AT-CATAGCCTTATCAAAATATAATAGCCATTA-G-ATACAACTTA--------------------ACTTTTG-AAAA--T-GCTGAGCC-TC-A-CCTTT---------TGATT-GGGTTC-TCGATATT--CGAATAAGGC-TATTTGTTCCGTTAAAGAAAG--A---ACGAAATAAAGTTATAAA----TGATT-AAAAAAAATCTTA-GCTCGTTTGACTGTTTATTTAC-----CATAACAG-AA--TTCTACTTGA--AAATATATTAACC-TGAATTGACCGCGCGGCGCGCCGGTCGCGCCGAAT-ACAACTttaatttaatgaagtgatatgaaattattttgtaaacacaaaaatggcgcgttaattatgcataagttttaagaattgggaagggatgtatgaactttggtacccactgtatatagatccctagcatttggtcattgaaatggaggacaggctgatgtatattcgccactttaaaacttttgatttatccatataaatataaacagttcaggcaaaaatcatagccttatcaaaatataatagccattagatacaacttaacttttgaaaatgctgagcctcaccttttgattgggttctcgatattcgaataaggctatttgttccgttaaagaaagaacgaaataaagttataaatgattaaaaaaaatcttagctcgtttgactgtttatttaccataacagaattctacttgaaaatatattaacctgaattgaccgcgcggcgcgccggtcgcgccgaatacaact
gi|10 : aagcaaaacgacaaaaagcacattgagtcgactctgtttttgaaggggaggaggggggggggagggggggcaagcaaaaaaaatttaaaaaaactatggacattgttcttgtaattacctagactagacatgcattatagcttgaaaaataattgataaaatattctgccccccccccctccacttttaaaagtggggcgggggataccccactcacccgggctccttattaccgtacgcccatggcgtgttaaaatcaagttaagacgggaattgaggtttttctttcaagacatgatgtataatgatcaatctcatgcatgtaattactggcagtttatccgacatttcatccacaccttccaaatctgtcatgttaccggtcttgcatgttacacgattgattactatgagatttagagcacattattgaaaagaccggggggggggtggttaggttgacttctgtgcatgtaggcctaaagtaatatacttttaataatgcatatttaatttaatgaagtgatatgaaattattttgtaaacaATTTG-TCAT--AAAAGTGGA-G-A-CCA-CGG-TATGTAT--TC
gi|11 : aatgttgaaggagcgaaatgggggtttcacatgggccttggcgtgagtaagttagatatattgaaggaataaataacatgagcaatttgagtataaatttaaaagtacataatatttggggaaaaaatctcacggctgattgatcgatataagacactggctcatcctttaccttacatATCTTTATCAAA-TATAATAGCCAT-G-C-ATAGAATGT---------------------------G-AAAT--T-GCTGAGCT-TCGAACCTTT---------TGATT-GGG--C-TCGATATT--CGAATAAG-C-TTTGT---CTGT-AAGAAAAGCAA---GCGATA-AA-GCTA--AAAGGTTAATTTAAAAAAAACCC-A-TCTTATTTGAGTGTTTATT-ACATTACCATAACAA-AA--TTATACT--G--A-------TAA------ATAGA-CGC-CGG-A-------CGCGCCAAAT-ACAACTtcgca
gi|12 : TACTAAA-TATAATAGCTAA-AAG-ATATAAAGTATCACTAGAATATTG------ACTTT-A-AAAAA-T-TCGGAGCC-TC-AAACGTT---------TGAT---------------------AA-AAG-A-CACTT--------GAGAAAAACAAAAAGCGATG-AA-GCTG--AA----AGGTT-ACGAAAG-TCA-A-GATCGTTTGAATG--TAT-------------------A--TTCTACT--G--AAA---ACTGA-CATA-ATTGA-CGCGCGA-T-------CGTTCCGAAC-
gi|13 : -AAAA--T-GCTGAGCCTCC-AACCTTTAGACTATTTTGATTTGGG--C-TCGATATT--CGAATAAG-C-TATTT---CCAT-AAAAAAAGCAA---GCGAT--AAAGCTA--AA----TGATT-GAAACAAATCG-AGGCTCCTTTGAGTGTTTATT--C-----CATAACAGCAAC-TTCTACT--GGAAAAAATA-TAACCATG-ATT--------GG-G-------TGCGCC-AATAACAA
gi|14 : -GATT----AGTA---TT-CATTATAGC-TTG-AAAAA--TACTTT-GAC-------------------AA-a
gi|14 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtCCCTCTCC--CC--C--ACTTTTGAAA----ATGGGG---G---CAA-AACTA--T-GC-----CCC-C-----CCCC---C----C--CCtaagggggggggaggggggggggggggggggggcatagttttgcccccattttcaaaagtgggggagagggtgaattgcccacacacccttcccc
gi|14 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtgattagtattcattatagcttgaaaaatactttgacaataagggggggggagggggggCC--CC--C--ATTTTCAAAA----GTGGGG---GAGAGGGTG---AATT-GC-----CCA-C-----ACAC---C----C--tgaattgcccacacacccttcccc
gi|15 : tgggcaaacttctaaatgtggcaaggaaaaaaaccccaagtgattagtattcattatagcttgaaaaatactttgacaataagggggggggaggggggggggggggggggggcatagttttgCACGCAAAA-AATTAAAAGGCA-CA-TAG----T------CA--C----TGATCT--G-----TTTT---------GA--AAGA--------GGG--GG--------CATTCTTA--AA--AA-A--------AATAAGGAGAA-AAGGC------------A-----C-AGAGAC-------A-C-CGT--T-C-TGTAACTA--CT---A-GACT----AGTAA--TT-CATTttcccc
gi|16 : catgcaggataggcataggactgggacaaacttctaaacaatgtgaaaaaaA-----A--TC--AA-A--------AT-------AATAA---------------G-----C-GTAAAAAA----CA-C-TGT--T-C-TGTAACTA--CT---T-CACT----AGTAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GAC-------------------AATAGGAGGGGGACAAAAAC-ATA---GT---------------------TTTG---------CCTCCT--CC--T--ACTTTCAAAG----GTGGGG---G---GAT-T---A--T--------CCC-C-----CCA---------C--CCGGC-TCC---------A-A--------CGCCCAT-G
gi|17 : ctgtaC--AA-A--------AA-------TA-AA---------------G-----G-ACAAAC-----------TGTG-T-C-TGTAAATA--CT---AAGACT----GATAA--TT-CATTACAGC-TTT--AAAA--TAC-TT-GAC-------------------AA-A-----------------A
gi|18 : aaaatgtgtataAAT-A-A-GTTCATATGGGTGTTTATC-AT-----CAGAGCA--AATTTTCTACT--G--AAATgataggggggggggcataacatcctttcatgttttgcccctcccttttcaagtgggggcaaatcccatgcccacg
gi|2 : attcaattagtaattttagcatacatttacataaataattgataaaattatgacagtaaattggtttgagacattggtggagggaaggtAAAT-AA-T-TGGCAAGCAAAA-GAC-AAAAGGCAACA-T------T------AA--C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAC------CA-CATGT--T-C-TGTAATTA--CT---A-GACT----AGTAC--GG-CATTATAGC-TTG-AAAAA--TAC-TTAGAT-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCC--CCGTC--ACTTT-AAAA----GTGGGG---C---GGG-G---A--T-AC-----TCC-C-----TCAC---C----C--CCGGT-TC----------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AG-CGGAGA-T--AGG-TTTTCTTACTAAGAACATTGCGGTC---TACTGAGC--ATGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATAT------CTTGTCA-GT-T-TAATC--A-CATTTTC-ATC---ACAC-TCTTC-C-A---AATATGTC--ATG-TACC----GGGGTCT------TG-------CA----CGTT------TTGATTTACTATCGAGATTTAGA-GCA-ATTAT-G-AAAGAGCGGGGA--GGGGGGGGGGGGGGGGGGTAGT-T--GATTTCGGTGTGCATGCAGGCCTACCACA-AGTTGGGCGC---T--AA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATG-TGAACTT-GGTA--------CCCGACTTGGTTATAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGGA-G-A-CAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAA------ATAAACAGTTTAGGCAGAA-TACTTTAT-TATATCCTTATCAGA-TATAATAGCCAT-A-G-AT-CAGCGTA--------------------ACTTT-GGAAAA--T-GCTGTGCT-CC-AACCTTT---------TGATT-GGG--CCTCGATATT--CGAATAAG-C-TATTT---CCGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----TGATT-AAAAAAAATCT-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAACCATG-ATTGA--GCGCGG-G-------CGCGCCGAAT-ACAA-TAGcaaagtattgagagtactgt
gi|20 : ctaataAGCAA---GCGATA-AA-GCTA--AA----TGATT-AAACAAAATCT-A-GCTCGTTTGAGTGTTTATT-CC-----CATAACAA-AC--TTCTACT--G--AAAAATATTAACCATG-ATT---------G-G-------TGCGCCCAAT-ACAACTAG
gi|22 : TAGAC-------A-C-TGT--T-C-TGTAACTA--CG---A-GACA----AGTAA--TT-CATTATAGC-TTG-
gi|23 : ct-AAAACCA--AA----CGGCT-AAGAAAA-TCA-A-GCTCATTTGAGTGTTTATT-AC-----CATAGCTG-AA--TTCTACT--G--AAAAACATTGTCCACA-ATTGA-AGCGCAG-A-------CGCGCCGAAT-ACTACTgcacttttttataataagggggggggaggggggcatagttacctggctccagtgtacgcccatg
gi|24 : c-T------T------GA--C----CTA-CTCTG-----TTTT---------GA--AGGG--------GGGTGGGGG------CA-----A--GC--AA-A--------AA-------AA-AACCATAATACAAACAAA-----C-ATGGAC-------A-C-TGT--T-C-ATTAATTA--CT---G-GACT----AGTAA--TG-CATTATAGC-
gi|25 : T-GGC-------------------AA-A-----------------ATAATAGT---------------------TTTGCCCCCCCCTCCCCCC--CC--CCGACTTTCAA--------GGGG---G---G
gi|26 : gaagttgtaactgaaaaatactttacatacaacaggggtaggaggggggtggggCCCC--TC--CGAACGTTCAAAG----GTGGGT---G---GGG-G---A--G-TC-----CCT-C-----CC----------------GC-TCC---------C-A--------CGCCCAT-G
gi|27 : tgtaactggaaaaatactttaacaatacagtgggagggcgcaaatcaaag-A-----------------ATA---CT---------------------TTTGCCACCCCCC-----C--CC--C--GCTTTTAAAA-------GAG---G---GGG-G---T--T-AC-----CCC-C-----CC-C---CTTTTC--CGGGC-TCC---------T-A--------CGTCCAT-G
gi|28 : gttacttgaccaaaaaaaaggggggggtGCAA--TT-CATTATAGC-TTG-AAAAA--TAC-TT-GACGATTGGTGGGGGAAGGCAGAA-AC----------------ATA---AT---------------------GTTGCTCCCCCCCCCC
gi|29 : ------CA-----A--GC--AG-A--------AA-------GG-GGGC-------------A-----C-ATAGAC-------A-C-TGT--T-T-AGTAACTATACT---A-GACTGTCTAGTAA--TT-C------GT-TTG-AAAAA---AC-TT-GAtgataaatgaaattgccaccccggttc
gi|3 : AT-AAGT-TGGCAAGCAAAA-GAC-AAAAGCAA-CA-T------T------GAA-C----CTA-CT--G-----TTTT---------GA--AGGG--------GGG--GGGG------CA-----A--GC--AA-A--------AA-------AA-AA---------------A-----C-ATTGAT------CA-C-TGT--TTC-TGTAATTA--CT---A-GACT----AGTAC--GG-CATTATAGC-TTG-AAAAAAATAC-TT-GAT-------------------AA-A-----------------ATA---GT---------------------TTTGCCCCCCCCCCCCCCCACCCGTC--ACTTT-AAAA----GTGGGG---C---GGG-G---A--T-AC-----TCC-C-----TCAC---C----C--CCGGA-TTC---------T-A--------CGCCCAT-GCGTGTT--AATCAA--TA-AGCCGGGA--TA---G-TTTTCTTACTAAGAACATT-CGG-C---TACTGAGC--ATGAT--GTATAATG-TCAATTTCTCAAGCAATGTAGATAT------CTTGTCAAGT-TGTAATC--ATCATTTTCTATC---ACAC-TCTTCGC-A---AATATGTC--ATG-TACC----GGGGTCT------TG-------CA----CGTT------TTGATTTACTAT-GAGATTTAGA-GCA-ATTAT-G-AAAGAGCGGGGAGGGG-GGGGGGGGGGGGGGGTAGTAT--GATTTCG-TGTGCATGCAGGCCTACCACA-AGTTGGGCGC---T--AA-T-ATGCATA-----T---AAGAACTCACC---AGGAAGGAATATGTTGAACTT-GGTA--------CCCGACTTGGT-ATAGATCCC-T-ATTCATTTG-TCAT-G-AAAGTGGA-G-ACCAG-TTG-TGTATAT--TCGC-ACTT-AAA-ATTTTTGATTTATCC-TAT------AAAT-----ATAAACAGTTTAGGCAGAATTACT-TAT-TATATCCTTATCAGA-TATAATAGCCAT-A-G-ATACAGCGTA--------------------ACTTT-G-AAAA--T-GCTG---T-CC-AACC-TT---------TGATT-GGG--C-TCGATATT--CGAATAAG-C-TATTT---CGGT-AAGAAAAGCAA---GCGATA-AAAGCTA--AA----T-AGT-ATAAAAAATCT-A-GCTCGTTTGAGTGTTTATT-AC-----CATAACAG-AA--TTCTACT--G--AAATATATTAA-CATG-ATTGA-CGCGC-G-G-------CGCGCCGAAT-ACAACTttcgtgtaaaaacatctaaatcata
gi|30 : GACACGCAAAA------AAGGGCA-CA-T------A------GT--C------A-CT--GATTTATTTT---------GAAGAGGG--------GGG--GGGG------CA-----T--TCTTAA-G--------AA-------AA-GGC--------------A-----C-ACAGA-------CA-C-TGT--T-C-TGTAA
gi|31 : aatgtgacaaAAA----G-GGGG---G---GGG-G---G--T-GCAGTTGTAT-C-----CCATATAT----C--CCGGC-TCC---------T-A--------CGCCCAT-G
gi|32 : aaacattattttgccttcttacccctttctatgagggCCC--TC--T--CTTTTCAAAAA---GGGGGG---G---GGG-G---A--T-GC------------------C---T----C--CCGGT-TCC---------T-A--------TGGACAT-G
gi|33 : agaaaaaaaggggggaggcaataacttacttttg-C-A---AATATCTC--ATG-TACC----GGGGTCT------TG-------CATACACGTC------TTGATTTACTAT-GGGCTTTAGA-GCA-ATTATTG-AATGAG-GGGG---GGGGGGGGGGgaa
gi|34 : CCCCCC--CC--C--CTTTTCAAAA----GTGGGG---A---GCA-A---T--T-GC-----CCC-CA----CCCC---C----CTTCCGGC-TCC---------T-A--------CGCCCA
gi|36 : aaaacatactattatactattg--GTGATCCGTATAAGGACCAAC--CTCATTCA-TGTGGGCAT------C--GACA-GT-T-TT-TCAGA-CATTTTC-GGC---A-AT-CCTTT-C-aga
gi|37 : ctttaaagtCCCCCC--CC--C--CCTTTCAAAAAGGGGTGGGT---G---GGT-A---A--TTGC-----CCC-CGTGCCCCAC---C----C--CCGGC-TCC---------T-A--------CGCCCAT-G
gi|39 : ttgCCCCCCCCACACA--CA--C--ACTTTGGAAA----G-GGGG---G---GGG----------GC-----CCC-A-----TCTC---C----C--TCGGC-TCC---------T-A--------CGCCCAT-Ga
gi|4 : T----AGTAA--TG-CATTATAGC-TTG-AAAAA--TAA-TT-CAT-------------------AA-A-----------------ATA---TT---------------------TCTGCCCCCCCCCTCC------------ACTTTTACAA----GTGGGG---GCG-GGG-G---A--T-AC-----CCC-C-----TCAC---C----C--C-GGC-TCC---------T-ATACCGTGACGCCCAT-GCGTGTT--AATCAG--TA-AGACGGGAA-TG-AGG-TTTTCTT------AAC-----------------A-C--GTGAC--GTATAATGATCAA-TCCTCATGCAATGT-GATAG------TTTGTCA-GT-T----TTCGA-CA-TTTC-ATC---ACA--CCTTC-C-A---AATCT-TC--ATG-TACC-----GGGTCT------TGCAATGTACA----CGTT------TTGATTTACTAT-GAGA-TTAGA-GC--ATTATTG-AA--AGC----------GGGGGGGTGGGGGTGTAGT-T--GACTTCG-TGTGCATGTA-GCCTA----A-AGTAG-----------AA-TAATGCATA-----T---at
gi|4 : ACCACATAAT--GGCGC---T--AAAT-ATGCATA-----TT--AAGA---CATT---GGGAAGGAGGATG-TTGACT---GTA--------CCCGACTTGGTTATAGAT-CC-T-ATTCATTTG-TCAT-GAAAAGTGGAAG-A-CAG-CTG-T--ATAT--TCGC-ACTT-AAA-ACTTT-GATTTATCC-TAC------GAAT-----ATAAACAGTTTAGGCA-AA-TA---TAT--ATAGC-TTACCAGA-TATAATAGCCAT-A-G--TACAACGTA--------------------ACTTT-G-AAAA--TAGCTGA--C-CC-AACCTTT---------TGATT-GGG----TCGATATT--CGAATAAG-CCTATTT---CCGT-AAGAAAAACAA---GCGATA-AA-GCTA--AA----TGAT--GAAAAAAATCT-A--CTCGTTTGAGTGTTTAT--AC-----CATAA--G-AA--TTC-ACT--G--AAATATATTAACCATG-ATTGA-CGCGCGG-GC------CGCGTCttaatttaataatgatatgaattatttgtaaccacataatggcgctaaatatgcatattaagacattgggaaggaggatgttgactgtacccgacttggttatagatcctattcatttgtcatgaaaagtggaagacagctgtatattcgcacttaaaactttgatttatcctacgaatataaacagtttaggcaaatatatatagcttaccagatataatagccatagtacaacgtaactttgaaaatagctgacccaaccttttgattgggtcgatattcgaataagcctatttccgtaagaaaaacaagcgataaagctaaatgatgaaaaaaatctactcgtttgagtgtttataccataagaattcactgaaatatattaaccatgattgacgcgcgggccgcgtctg
gi|40 : tagtaatgcattatagcttgaaaaataattcataaaatatttctgccccccccctccacttttacaagtgggggcgggggataccccctcaccccggctcctataccgtgacgcccatgcgtgttaatcagtaagacgggaatgaggttttcttaacacgtgacgtataatgatcaatcctcatgcaatgtgatagtttgtcagttttcgacatttcatcacaccttccaaatcttcatgtaccgggtcttgcaatgtacacgttttgatttactatgagattagagcattattgaaagcgggggggtgggggtgtagttgacttcgtgtgcatgtagcctaaagtagaataatgcatatttaatttaataatgatatgaattatttgtaCCCCG--TC--C--ACTTTCAAAA----GTGGGGAGCG---GGA-A---A--T-TT-----CCC-C-----CCTC---C----C--CCGGG-TCC---------T-A--------CTCTCAT-Gtg
gi|42 : CCCC--CC--C--CCTTTTGAAA----GTGGGG---G---GG---------C-GC-----CCC-C-----CC-----T----C--CCTGC-TCC---------T-A--------CGCCCAT-G
gi|44 : -------------------AA-G-----------------ATA---GT---------------------TTTGCCCCTCCCC------------C--ACTTTCAAAA----Gtt
gi|45 : ggggggggggggcaaaGGGG---G---GGG-C---AATT-GC-----CTC-C-----CCATGT-C----C--CCGGC-TCC---------T-A--------CACCCAT-
gi|46 : gggAATATATTAACCATG-ATTGA-CGCGCGG-G------------CGAAT-ACAACTAG
gi|47 : GTGGA-G-A-CAG-CTA-TGTATAT--TCGC-ACTT-AAA-A-CTTTGATTTATccaa
gi|48 : AGGCA-CA-TAGTCACT------GA--C----CT---T--------TTTT---------GA--AAGG--------GGG--GGGG------
gi|5 : AAATCAA-TGTGGCAAGCAGAA-CAA-AAAAGGCA-CACT------T------GA--A----CTA-CTCTG-----TTTTTGGACG---GG--GGGG--------GGG--GGGG------CA-----G--GC--AA-A--------AA-------GA-AA---------------AAAAGAC-ATAGAC-------A-C-TGT--T-C-TGTAAC-A--CT---A-GACT----AGTAA--TTGCA-TATAGC-TTGAAAAAA--TACTTT-GAT-------------------AA-A-----------------ATA---G----------------------TTTG-CCCCCCCCCCTTCC--TT--C--ACTCTTAAAA----GTGGGG---C---AGG-G---G--T-GC-----CCG-C--------C---C----C--CCGGCTTCC---------T-A--------CGCCCA--GC-TGTT---ATCAA--TACAGACGGGAA-TGCAGG-TTTTCGT--TAAG-ACATG-TGG-TCTATACTGA-CAGATGAT--GTATAATGATCAAATTCTCATG---TGTAGATACCATGTACTTGTCA-GTCT-TAATCCGA-CACTTCC-ATCTCAGCAC-CTTGC-CAA---AATATGTCATATG-TACCA---GGGGTCTGTGCTGTA-------CA----CG-T------TTGATTTACTAT-GGGATTTAGAGGCA-ATTATTG-AAAGA-------------GAAGGGGGGGGGGGTAGT-TTGAACTTCA-TGTGCATGTAGGCCTAg
gi|5 : GTTGGGCGC---T--AA-T-ATGCATA-----TTAAAGGGACCCACCTGGGGGAAGGATTGGT-TGAAATT-GGTATGGATCCCCCTG--TTGAA-GTAAAT-AA-TAATTCATGT--TCAT-GAAAAaagtaaatatatatattattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaacgttgggcgctaatatgcatattaaagggacccacctgggggaaggattggttgaaattggtatggatccccctgttgaagtaaataataattcatgttcatgaaaa
gi|50 : aaatcaatgtggcaagcagaacaaaaaaggcacacttgaactactctgtttttggacggggggggggggggcaggcaaaaagaaaaaaagacatagacactgttctgtaacactagactagtaattgcatatagcttgaaaaaatactttgataaaatagtttgccccccccccttccttcactcttaaaagtggggcaggggtgcccgccccccggcttcctacgcccagctgttatcaatacagacgggaatgcaggttttcgttaagacatgtggtctatactgacagatgatgtataatgatcaaattctcatgtgtagataccatgtacttgtcagtcttaatccgacacttccatctcagcaccttgccaaaatatgtcatatgtaccaggggtctgtgctgtacacgtttgatttactatgggatttagaggcaattattgaaagagaagggggggggggtagtttgaacttcatgtgcatgtaggcctaaagtaaatatatatattattggtaaataatgcatattcttattaaatgatatgaagtatatgtatacattaactgtaaaac-A-CAG-CTG-TGTATAT--TCGC-ACTT-AAA-ATTTTT-ATTT
gi|6 : --GTATAATAATCTATTG-TCATATAGTGCAGATA-------CTGCCCA-GT-T-CA-TCTGA-AATTTT--ATC---TCAC-CCTTC-C-ATATAATGTACC--AAG-TACCAGCTAGGGTCT------TA--------------------------------TAG-GAG---TATA-AC-----ATTG-AAAGAGCGAAT---GGGAGAGGAGGG
gi|6 : A-AGTTTGACGG---TTGAT-T-AT---TA-----T---AAGA---CACT---AGGAAAGGATTCG-GG--TTT-AG----------CCTTATTTAGC-ATA-------T-ATTT-TTTG-AAAT--AAAAGTGGA-G-A-CCA-CTG-TGTGTATCCTCGC-ATCT-AAACA--CGTGATTTAT---TAGGGAAAAAAATACCAAACAAACAGTTAA---AGAG-TA---AATATATATCTTTATCAAA-TATGATAGCCAA-A-ATATACAAAGTAACATTGTATGGAGTTTGATGACTTT-G-AAAAATT-GCTGATCC-TC-GAACTTTAATTC----TGATT-GGA--C-TCGATATTTGTGGTTCAG-T-TATTT---CCGT-cgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaaagtttgacggttgattattataagacactaggaaaggattcgggtttagccttatttagcatatattttttgaaataaaagtggagaccactgtgtgtatcctcgcatctaaacacgtgatttattagggaaaaaaataccaaacaaacagttaaagagtaaatatatatctttatcaaatatgatagccaaaatatacaaagtaacattgtatggagtttgatgactttgaaaaattgctgatcctcgaactttaattctgattggactcgatatttgtggttcagttatttccgtttataaaaaacgaatcaaat
gi|7 : gtataataatctattgtcatatagtgcagatactgcccagttcatctgaaattttatctcacccttccatataatgtaccaagtaccagctagggtcttataggagtataacattgaaagagcgaatgggagaggagggcgtctggcttcaagtgggcctaggcgaaagttttattcaaattaacaatctgagtatacaattacgtacacaataattgataaA-------AA-AA---------------A-----------AC------CA-C-TGT--T-C-TGTAACTA--CTTTCA-GGCT----AGTAATGTT-CATTATAGCTTTG---AAA--TAC-TT-GAC-------------------AATAAGGAGGCGGACAAAAACATA---GT---------------------TTTG-----CCCCTTTCCT--CC--T--ACTTTCAAAG----GTGGGG---G---GAT-T---A--T--------CCC-C-----CCA---------C--CCGGC-TCC---------CAA--------CGCCCAT-Gttataaaaaacgaatcaaat
gi|8 : catatatagactgatttttaatgaggagggagcacacttctaaatgtggcaaagcaaccaaaaaaagggggggcacatgtagagcactttggttgtgtgtgtgttgtgtggtgtgcgtgtaaactgtaatcaaaatatagcgtA-A--------AA-------GC-AC---------------A-----T-ATAGAC------CTTC-TGTATT-T-TGTAACTA--CT---A-GAAT----AGTAA--TT-CATTATAGC-TCG-AAGAA--TAC-TT-GA--------------------AA-G-----------------A-A---GTGGAGGTTGGGGAAAAACATAATTTG-------CTCCCCCT--CC--C--ACTTTCAAAA----GTGGGA---G---GGG-C---AATT-GC-----CAC-C-----ATGC---C----C--CCGGC-TCC---------C-A--------AATCCA
gi|9 : caagacactgatctcatttgaatgcgggggagtgggttctaaatgtgacaaacaaaacataggatAAT-AT-G-TAACAAGCAAAA-GGT-AAAAAAAA-AA-T------CCATAAAAA--CAGTGCTG--T--G-----TTTT---------GA--GGGG--------GGG--GGGGGACTTCCA-----AATGT--GATA--------AG-------CA-GAGGGGC----------A-----C-ATAGACACTGTTCA-C-TGT--T-C-TGTAACTA--CT---A-GACTGGCTAGTAA--TT-CGTTATAGC-TTG-AAAAA--
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TCAATGCATGATTTAGATCCATTCTCATTGCATGTATATAATGAAGATACTGACCAGTTTAGCAAAAGTTCCAAGTATAATAAGTACCAGGGTCTTATACTGACAGTTATGTTGAAGGAGCTAGTAAAGGGGATGGGAGCTCTGG
Unaligned ( gi|21 ): CACCGAGTAATAAACAGGCAACTGAATGCTATGTATTATGAACAGACAAATGAATGTTTGTAATAAATAGACAAATATGTTTTATAAAAATATTGAATAATTCGTATTTCAGC
Unaligned ( gi|35 ): ATAGGGAGGGGGATTACTGGCTTTAAATGGGCCCAGGAGAAAATATTTTTTAATAACAATTGAGCGTAACTTATGATAATTGATAAA
Unaligned ( gi|38 ): CAATGAACATGCAGTGCAGATACAGCCCAATTTATCTGACAATTTATCTCGCCTTTCCGTGTATTGCAAGTATCA
Unaligned ( gi|41 ): TAATTTGTTTTGATTGGGGGGGGGGGGGGGGGGTTGGTAAAAAAAAAAAAAGACAGAG
Unaligned ( gi|43 ): GAGGTGGATGGACTTCTAATTATGCCCCACCCGGCTCCTACGCCCATGT
Unaligned ( gi|49 ): AGCCCCTTCCACCTTAATATTATTTATGTAGCTAAAA
Unaligned ( gi|51 ): CCCCCCCCCTTTGATAGTGGTATTTAGAGGG