lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111 11111111
lowQualScore : 999999 1 11111 1 11 66666666666666666666666666666666666666666666666666666666666666666666666666 11111 444444444444444444444444444444444444444444444444444444444444444444 2222 1 11111 1111111 66666666666666666666666666666666666666 222222 1 222 22222222 2222
lowQualScore : 000000 2 55 6 4 1 3 11111 4 55 2 4 4 0 3 777 9999 4 5 0 777 1 4 4 11 77777777777777777777777777777777777777777777777777777777777777777777777777 66666 6 99 333333333333333333333333333333333333333333333333333333333333333333 5 1111 33 1 0 5 5 5 44444 8 77 8888888 5 66 5 77 5 5 5 44444444444444444444444444444444444444 8 333333 3 888 11111111 9999 66
lowQualScore : ...... . .. . . . . ..... . .. . . . . . ... .... . . . ... . . . .. .......................................................................... ..... . .. .................................................................. . .... .. . . . . . ..... . .. ....... . .. . .. . . . ...................................... . ...... . ... ........ .... ..
lowQualScore : 000000 0 00 9 0 2 5 11111 4 66 6 4 4 1 9 888 4444 4 0 9 888 0 4 0 00 66666666666666666666666666666666666666666666666666666666666666666666666666 77777 7 22 333333333333333333333333333333333333333333333333333333333333333333 7 0000 11 4 1 7 7 7 33333 7 99 6666666 0 44 7 99 7 7 7 99999999999999999999999999999999999999 0 555555 3 555 00000000 0000 00
consensus : NNNNNNNNNNNNNNNNNNAAAAAG----CAAAATACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTATGA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-ANATAT-GAACGAGTTAT-AAACTGTNTTA---CACT----TCACAGAGT-AAAACA---AGGTGAA-TTTCAT-AAAA-NTA--------C---T--TAT-----------------CATA-C--ACATG--T------T--TTCT--TGTT-CATAAAGGG-----AA-ATT--ATT-A----TATC-CTAT-TACT-TCTCTCTTTA--------C--------T---AA-----------CA-AGGTCATTA--ATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---G-AGATATACCTTTCAAGGTTT-----------TCACT-AGGATTT---TT-AAAACTCGA-GTCCANGATCCAT--TC---GGAGGTTANTNNTCTTG
Reference ( gi|3 ) : TAAAATCAGTTTAACATAAAAAAGATTACCAACTACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTGTGA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTCTTA---CACT----TCACAGAGT-ACAACA---AAGTGAA-TTTCAT-AAAA-TTA--------C---T--TGT-----------------CATA-C--ACATG--T------T--TTCT--TGTT-TA-AAAGGG-----AA-ATT--ATTTA----TACC-CTATGTACT-TCTCTCTT----------C--------T---AA-----------CA-AGGTCATAA--ATTGTTTTCTGTTTGTTTCTG-TAA-T-AA-----GTCGTCACTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTCC---G-AGATATACCTTTCACGGTTT-----------TCACT-AGGATTT---TTAAAAACTCGA-GTCCAGGATTCATATTCAAGGGAGGGT-TTTTTTTTGT
gi|7 : AAAAAG----CAAAATACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAATAATGA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCG-ATATAT-GAACAAGTTTT-AAAACGTATTT---TACT----TCACAGAGT-AAAAGA---AGGTGAC-TTT--T-AGA---TA------------T--TGT------------------GGA-C--ACATG--T------
gi|12 : aaaagagaattagtggtgtggaattctgagAAATACAGTCAAACCTGTTTTAAGAGGCCACC--TTAGGGAAGTTATGA-AAGTG-----------------GCCACTTATTCCAGTGTGCCTTAAGCTGTAAACAGCCAGACCAATCG-ATATAT-GAACAAGTTAT-AAACT---TTAGAACACT----TCACAGAGT-AAAATATTTAGGTGAA-TTTCAT-AAAA-a
gi|17 : aaaatcattaccatattgtattcataacaagAATTACAGTCAAACCTGTTTTCAGAGGTCACT--TTAGGGAAGTTATAA-AAGTGGCCACATAAat
gi|15 : TACAGTCAAACCTGCATAAAGAGACCGTCCATT---GGAGTACAGATAAGGGGTCACATATGACAGGTGGTTTCTTAT
gi|1 : aaagtgcattggagctgaacataAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTATGA-AAGTGGCCACTTAAGACAGGTGGCCTCTCATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-TAACTGTCTTA---CACC----TCACAGAAT-AAAACA---AAGTGAA-TTTCAT-AAAA-TTA--------A---T--TAT-----------------CATA-C--ATATG--TAGAAAATAATACG--TGTA-CATAAAGGG-----AA-ATT--AT-------TATC-C----TACT-TCTCTCTT----------TAAAAAAAAC---AA-----------CA-AGGTCATTA--ATTGTTTTCTGTTTCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTTT-GATCCACCAAGCACA-TTA-T-CTGATCCTTACCAA-TCTCTAGTTC--TGC-TGC-AA-TCTT-----GTAGA-A----TTTC------T-----------TCATTAAGGATAT---T--AAAACTCGA-GTTCATGATCCA---TC---GGAGGTTATTGTTCTTGca
gi|11 : AGTCAAACCAGTTTTCAGAGGCCACC--TTAGGGAAGTTATGA-AAGTGGCCACTCAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAATGAGTTAT-TGACTGTCTTA---AACT----TCTCAGAGT-AAAACT---AGGTGAA-TTTCAT-AAAA-TTA--------C---T--GAT-----------------CATA-CATACATG--T------gttaaagcgtaaatggtcgtagcgttccgccatctcagcctacatttgagtgagtccacacaccaattaggatgtcccgcatactactcgtgtacgctcaacatcaaaacct
gi|13 : AGTCAAACCTGTTTTCAGAGGCCACC--TTATGGAAGTTATGA-AAGTGGTCACTTAAGACAGGTGGCCTCTTATTCCAGTTTACC-----CTGTAGACAGCCAT-TCAATCC-AAATAT-GGATGAGTTAT-AAACTGTCTTA---CACT----TCACAGAGT-AAAATA---AAGTGAA-TTTCAT-AAAA-atgtagaaaacaatacgtgt
gi|19 : GTCAAACCTGTCTTAAGAGGCTACC--TTGGGGAg
gi|2 : TCAAAC-TGTTTTCAGAGGCCACC--TTAGG-AAGTTATGA-AAGTGCCAACTTA-GACAGGTG-CCTCTCATTCCAGTTTGCC-----CTGT-GAC-GCCTG-TCAATCCCAAATATTGAGCAAGTTATTAAACTGTCTTA---CACT----TCACAGAGTAAGAACC---AAATGAATTTTCAT-AAAATTTG--------CA--T--TATC----------------CATATT--ATATG--TAGAAAATAATACT--TGTTACATAAAGGA-----AA-ATT--AT-------TATC-C-A-----T-TCTCTCTTTAAAAAAAACC--------C---AAAAACCCCAAACCA-AGGTCATTA--ATC------------TTTCTG-TAA-T-AA-----GTCGTCGCTGTTTTTCTTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-TATCTAATTCCTTGCTTGC-AA-TCTTGT---G-AGA--------------TTT-----------TCATT-AGGATTTTTCTTAATAACTCGACGTC--AGATTCAT-------GGAGGTT-GTTGTTTTGtttcataaaa
gi|9 : agtCAAATCTGTTTTAAGAGACCACG--TTAGAAAAGTTATGA-AAATGGCTACTTATGACATGTGGCCTAATATTCCAGTTTGCT-----TTGCAAACAACAAG-TCAATCA-ATATAT-GAACAAGTTAT-AAACCATATTA---CACT----TCACAGAGT-AAAACA---AGGTGAT-TTTCATAAAAA-ATA--------C---T--TAT-----------------TATA-C--GTATGCAT------A--TTCTAATGTT-gtaaagcctggtaaatgtgtaaagttgccatctcagctatattttttgtagtcccaaaacaattaggattgtcccgccattacttactgtggtacgctaaccgtcaaaa
gi|10 : gaC--TTAGGGAAGTTATGA-TAGTGGCCACATAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTATTA---CACT----TCACAGAGT-AAAAGA---AGGTGAT-TTTCAT-AAAA-ATATGCACATTC---TAATGTTCATGTAGAAAATAATGCATG-T--ACATG--T------T--TTAT--TGCT-GA-AAAAGG-----AA-ATT--ATTcttgtagaatataatac
gi|6 : CTTATTCCAGTTTGCC-----CTGTAAACAGCCAG-ACAATCA-ATATGT-GAACAAATTAT-AAATTTTATTG---CACTTGGATGACAGGGT-AAAATA---AGGTGAA-ATTAAT-AAAA-ATG--------CAAAT--T-T-----------------CA-A-T--AC-TG---------T--TTCC--TG---TA-AAAGGGGCCCCAATATTACATTTA----T----CTTTAAACCATC-----C----------C--------T---AA-----------CATAAACCAT-----TTA-TTTCTCCTT-TTCCCG-TAA-C-GT-----TTCATCGCAGTTTT--CTTTCTGGATC-------AACA-TTATT-TTAAag
gi|5 : TTTAT-AAAA-ATA--------C---T--GAT-----------------CATA-C--ATATG--aaatcctccagatattcagcttttcgtttca
gi|5 : taaaatttcataattttc-----------------CATG-T--ACATG--T------T--TTAT--TTAT-CA-GAAAGA-----AA-ATT--AT--AAGCCTACTTCTGTCTGGT-TTTTTTTT----------T--------T---AA--------------AGTCCATGATAATTGTTTTCTGTTTGTCTCTG-TAA-T-GT-----GTCATCACTGTTTT--CTTTTTGGATC-------AACA-ATAT--------------AA-CATTAAATTC--TGC-TGC-AA-TCTTGT---G-AGATATACTTTTCAAGGTTT-----------TCTCT-AGGAATT---TTTCAAACTTGA-GTcacattctaatgtccatgtagaaaataatacatgtacatgttttatttatcagaaagaaaattataagcctacttctgtctggtttttttttttaaagtccatgataattgttttctgtttgtctctgtaatgtgtcatcactgttttctttttggatcaacaatataacattaaattctgctgcaatcttgtgagatatacttttcaaggttttctctaggaatttttcaaacttgagt
gi|4 : taaaatttcataattttctttataaaaatactgatcatacatatgcacattctaatgtccatgtagaaaataataG-----AA-AGT--ATTAT----TATC-CTACGTACT-TCTTTTTTTATT------C--------TTAAAA-----------CA-AGGTCATTA--AAAGTTTTCGGTTTGTTTCTG-TAAAT-AA-----GTCGTCGCTG-TTT--CTTTTCGGGTC-------CACATTTATT-CTGAGTCTTACCAA-CATTCAATT-----C-TGC-AATTCTTGC---G-AGATATACCTTTCAAGGTTT-----------TCACA-AGGATT
gi|14 : catatgta---AA-----------CA-AGGTAATTA--ATTGTATTCTGTTTCATTCTG-TAA-T-AATTTAAGTCGTCGTTGTTTT--CTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGCAAA-TCTTGT---G-AGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacctactgtgtacggctcacgtcaaaacaacactt
gi|8 : ca-----------CA-AGGTAATTA--ATTATT--CTGTTCATTCTTAATAA-TTAA-----GTCGTC--TGTTT---CTTTCTGAATC-------CACA-TTATTCCTGAGTCTTACCAATCATTTAATTC--TGC-TGC-AA--ATTGT---G-AGAT
gi|16 : caaacc-TTATT--TGAGTCTTGTCAA-CATTTCATTC--TGT-TGC-AA-TCTTGCAAGA-AGATATAACTTT-----TTTATCCAGATGAATCACT-ATGATTT---Ttggttgtttttgttattttttggcaaagccttaatgtgtaaaggttgcattctcaagcttaaatttgtatgagtccccaataacaattagattggtcccgcatca
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AAACAAGTATGAACTTAGCCATCATTGTGTCATCTGTTTTATTTTCA
Unaligned ( gi|20 ): TATCATATTTATAAGTTAACTTTTTCTTACA
Alignments
lowQualScore : 444444 11111 11111 444444444444 22 1111 333333333333 1111 888888888888888888888888888888888888 11111 1111111 11111 11 111 1 1 1 444444444 11
lowQualScore : 222222 1 44 3 3 4 00000 4 4 1 4 4 1 8888 4 777 4 3 55 44444 0 8 55 4 55 888888888888 00 77 8 1 2222 3 6 444444444444 2 6 4444 666666666666666666666666666666666666 5 66 66 0 5 5 5 5 22222 0 66 6666666 4 44 5 66 5 5 5 888 3 5555 66666 00 1 6 6 444 0 0 0 6 1 0 555555555 33 22 0
lowQualScore : ...... . .. . . . ..... . . . . . . .... . ... . . .. ..... . . .. . .. ............ .. .. . . .... . . ............ . . .... .................................... . .. .. . . . . . ..... . .. ....... . .. . .. . . . ... . .... ..... .. . . . ... . . . . . . ......... .. .. .
lowQualScore : 000000 0 66 3 3 6 00000 0 0 0 0 0 0 5555 0 000 0 6 66 88888 6 0 55 0 55 000000000000 66 22 4 7 1111 2 7 222222222222 5 7 2222 444444444444444444444444444444444444 0 99 88 1 9 0 0 0 55555 2 99 2222222 4 66 0 99 0 0 0 888 2 7777 77777 22 0 7 7 000 0 0 0 7 0 7 777777777 33 00 7
consensus : NNNNNNNNNNNNNNNNNNAAAAAG----C-AAATACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAA-TTTCAT-AAAA-ATAC---TTAT-CAT--A-C--ACATG--T------T--TTCTAATGTT-CATAAAGGGA----AATTA-TTAT-ATCCTAC-TACT-TCT----CTCTTT-------A--------CT-----AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
Reference ( family-1876 ) : NNNNNNNNNNNNNNNNNNAAAAAG----CAAAATACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-ANATAT-GAACGAGTTAT-AAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAA-TTTCAT-AAAA-NTAC---TTAT-CAT--A-C--ACATG--T------T--TTCT--TGTT-CATAAAGGGA----AATTA-TTAT-ATCCTAT-TACT-TCT----CTCTTT-------A--------CT-----AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATCC--ATTC---GGAGGTTANTNNTCTTG
gi|1 : AGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTCATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-TAACTGTCTTACACC----TCACAGAATAA-AACA---AAGTGAA-TTTCAT-AAAA-TTAA---TTAT-CAT--A-C--ATATG--TAGAAAATAATACG--TGTA-CATAAAGGGA----AATTA-T--T-ATCC----TACT-TCT----CTCTTTAAAAAAAA--------C------AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTTT-GATCCACCAAGCACA-TTA-T-CTGATCCTTACCAA-TCTCTAGTTC--TGC-TGC-AA-TCTTGT----AGA-A----TT-----TC-------TTCATTAAG-GATA---TT-AA-AACTCGA-GTTCATGATCC--A-TC---GGAGGTTATTGTTCTTG
gi|10 : C--TTAGGGAAGTTAT-GA-TAGTGGCCACATAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTATTACACT----TCACAGAGTAA-AAGA---AGGTGAT-TTTCAT-AAAA-AT-----------AT--G-C--ACA--------------TTCTAATGTT-CATGTAGAAA----Agttaaagcgtaaatggtcgtagcgttccgccatctcagcctacatttgagtgagtccacacaccaattaggatgtcccgcatactactcgtgtacgctcaacatcaaaacct
gi|11 : AGTCAAACCAGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTCAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAATGAGTTAT-TGACTGTCTTAAACT----TCTCAGAGTAA-AACT---AGGTGAA-TTTCAT-AAAA-TTAC---TGAT-CAT--A-CATACATG--T------taatgcatgtacatgttttattgctgaaaaaggaaattattag
gi|12 : AACAAG------AAATACAGTCAAACCTGTTTTAAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTA-----------------TTCCAGTGTGCCTTAAGCTGTAAACAGCCAGACCAATCG-ATATAT-GAACAAGTTAT-AAACTTTAGAACACT----TCACAGAGTAA-AATATTTAGGTGAA-TTTCAT-AAAA-ATatgtagaaaacaatacgtgt
gi|13 : aaaatcattaccatattgtattcatAGTCAAACCTGTTTTCAGAGGCCACC--TTATGGAAGTTAT-GA-AAGTGGTCACTTAAGACAGGTGGCCTCTTATTCCAGTTTACC-----CTGTAGACAGCCAT-TCAATCC-AAATAT-GGATGAGTTAT-AAACTGTCTTACACT----TCACAGAGTAA-AATA---AAGTGAA-TTTCAT-AAAA-
gi|14 : -----AA-----------CA-AGGTAAT--TAATTGTATTCTGTTTCATTCTG-TAA-T-AATTTAAGTCGTCGTTGTTTT--CTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGCAAA-TCTTGT---GAGATg
gi|15 : caATACAGTCAAACCTGCATAAAGAGACCGTCCATTGGAG----TACAGATAAGGGGTCACATATGACAGGTGGTTTCTTAT
gi|16 : aaagtgcattggagctgaacat-TTATT--TGAGTCTTGTCAA-CATTTCATTC--TGT-TGC-AA-TCTTGCAAGAAGATATAACTTTTTTATCCAGATGAATCACTATG-ATTT---Tca
gi|17 : AATTACAGTCAAACCTGTTTTCAGAGGTCACT--TTAGGGAAGTTAT-AA-AAGTGGCCACATAA
gi|19 : GTCAAACCTGTCTTAAGAGGCTACC--TTGGGGATTTCAT-AA-AA
gi|2 : TCAAAC-TGTTTTCAGAGGCCACC--TTAGG-AAGTTAT-GA-AAGTGCCAACTTA-GACAGGTG-CCTCTCATTCCAGTTTGCC-----CTGT-GAC-GCCTG-TCAATCCCAAATATTGAGCAAGTTATTAAACTGTCTTACACT----TCACAGAGTAAGAACC---AAATGAATTTTCAT-AAAATTTGCA--TTATCCAT--ATT--ATATG--TAGAAAATAATACT--TGTTACATAAAGGAA----AATTA-TTAT----CCA-----T-TCT----CTCTTT-------AAAAAAAACCC-----AAAAACCCCAAACCA-AGGTCAT--TAA------------TCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTTTCTTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-TATCTAATTCCTTGCTTGC-AA-TCTTGT---GAGA-------------------TT-TTCATTAGG-ATTTTTCTT-AATAACTCGACGTC--AGATTC--AT-----GGAGGTTGTTGTTTT
gi|3 : agtAAAAAGATTACCAACTACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTGT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTCTTACACT----TCACAGAGTAC-AACA---AAGTGAA-TTTCAT-AAAA-TTAC---TTGT-CAT--A-C--ACATG--T------T--TTCT--TGTT-TA-AAAGGGA----AATTATTTAT-ACCCTATGTACT-TCT----CTCTT-----------------CT-----AA-----------CA-AGGTCAT--AAATTGTTTTCTGTTTGTTTCTG-TAA-T-AA-----GTCGTCACTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTCC---GAGATATACCTT-----TCACGGTT-TTCACTAGG-ATTT---TTAAA-AACTCGA-GTCCAGGATTCATATTCAAGGGAGGGT-TTTTTTTTGggtaaagcctggtaaatgtgtaaagttgccatctcagctatattttttgtagtcccaaaacaattaggattgtcccgccattacttactgtggtacgctaaccgtcaaaa
gi|4 : taaaatcagtttaacataGA----AAGTA-TTATTATCCTACGTACT-TCT----TTTTTT-------A--------TTCTTAAAA-----------CA-AGGTCAT--TAAAAGTTTTCGGTTTGTTTCTG-TAAAT-AA-----GTCGTCGCTG-TTT--CTTTTCGGGTC-------CACATTTATT-CTGAGTCTTACCAA-CATTCAATT-----C-TGC-AATTCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACAAGG-ATTt
gi|5 : catatgtaTTTAT-AAAA-ATAC---TGAT-CAT--A-C--ATATGCAC------A--TTCTAATGTC-CATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacctactgtgtacggctcacgtcaaaacaacactt
gi|5 : taaaatttcataattttcAAA-ATA------ATACAT--G-T--ACATG--T------T--TTAT--TTAT-CAGAAAGA-A----AATTA-T-A--AGCCTAC-TTCTGTCTGGTTTTTTTT-------T--------TT-----AA--------------AGTCCATGATAATTGTTTTCTGTTTGTCTCTG-TAA-T-GT-----GTCATCACTGTTTT--CTTTTTGGATC-------AACA-ATAT--------------AA-CATTAAATTC--TGC-TGC-AA-TCTTGT---GAGATATACTTT-----TCAAGGTT-TTCTCTAGGAATTT---TT-CA-AACTTGA-GTgtagaaaataatacatgtacatgttttatttatcagaaagaaaattataagcctacttctgtctggtttttttttttaaagtccatgataattgttttctgtttgtctctgtaatgtgtcatcactgttttctttttggatcaacaatataacattaaattctgctgcaatcttgtgagatatacttttcaaggttttctctaggaatttttcaaacttgagt
gi|6 : taaaatttcataattttctttataaaaatactgatcatacatatgcacattctaatgtccatgtagCTTATTCCAGTTTGCC-----CTGTAAACAGCCAG-ACAATCA-ATATGT-GAACAAATTAT-AAATTTTATTGCACTTGGATGACAGGGTAA-AATA---AGGTGAA-ATTAAT-AAAA-ATGCAAATT-T-CA---A-T--AC-TG---------T--TTCC--TGT---A-AAAGGGGCCCCAA-TA-TTAC-AT----T-TA-----------TCTTT-------AAACCATCCCT-----AA-----------CATAAACCAT--TTA----TTTCTCCTT-TTCCCG-TAA-C-GT-----TTCATCGCAGTTTT--CTTTCTGGATC-------AACA-TTATT-TTAA
gi|7 : AAAAAG----CAAAATACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAATAAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCG-ATATAT-GAACAAGTTTT-AAAACGTATTTTACT----TCACAGAGTAA-AAGA---AGGTGAC-TTT--T-AGA----------TAT-TGTGGA-C--ACATG--T------aaatcctccagatattcagcttttcgtttca
gi|8 : aaaagagaattagtggtgtggaattctgag-----------CA-AGGTAAT--TAATTATT--CTGTTCATTCTTAATAA-TTAA-----GTCGTC--TGTTT---CTTTCTGAATC-------CACA-TTATTCCTGAGTCTTACCAATCATTTAATTC--TGC-TGC-AA--ATTGT---GAGATa
gi|9 : caaaccCAAATCTGTTTTAAGAGACCACG--TTAGAAAAGTTAT-GA-AAATGGCTACTTATGACATGTGGCCTAATATTCCAGTTTGCT-----TTGCAAACAACAAG-TCAATCA-ATATAT-GAACAAGTTAT-AAACCATATTACACT----TCACAGAGTAA-AACA---AGGTGAT-TTTCATAAAAA-ATAC---TTAT-TAT--A-C--GTATGCAT------A--TTCTAATGTT-Ctggttgtttttgttattttttggcaaagccttaatgtgtaaaggttgcattctcaagcttaaatttgtatgagtccccaataacaattagattggtcccgcatca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAACAAGTATGAACTTAGCCATCATTGTGTCATCTGTTTTATTTTCA
Unaligned ( gi|20 ): TATCATATTTATAAGTTAACTTTTTCTTACA
Alignments
lowQualScore : 222222 11111 11111 4444444444444444444 111 44444444444444 1111 888888888888888888888888888888888888 11111 1111111 11111 11 111 1 1 1 444444444
lowQualScore : 777777 99 44 3 3 0 00000 4 4 1 4 4 1 8888 4 777 4 3 66 44444 0 8 55 4 55 4444444444444444444 222 8 1 22222222222222 6 4444 666666666666666666666666666666666666 5 66 66 0 5 5 5 5 22222 0 66 6666666 4 44 5 66 5 5 5 888 3 5555 66666 00 1 6 6 444 0 0 0 6 1 555555555 7
lowQualScore : ...... .. .. . . . ..... . . . . . . .... . ... . . .. ..... . . .. . .. ................... ... . . .............. . .... .................................... . .. .. . . . . . ..... . .. ....... . .. . .. . . . ... . .... ..... .. . . . ... . . . . . ......... .
lowQualScore : 555555 00 66 3 3 2 00000 0 0 4 0 0 0 5555 0 000 0 6 00 88888 6 0 55 0 55 0000000000000000000 222 4 7 77777777777777 7 2222 444444444444444444444444444444444444 0 99 88 1 9 0 0 0 55555 2 99 2222222 4 66 0 99 0 0 0 888 2 7777 77777 22 0 7 7 000 0 0 0 7 0 777777777 3
consensus : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAAT-CCAAATA-TGAACGAGTTA-TAAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAA-TTTCAT-AAAA-ATAC---TTAT-CAT--A-C--ACATG--T------N--TTCTA-ATGT-T-CATAAAGGGAAATTA-TTAT-ATCCTAC-TACT-TCT----CTCTTT-------A--------CT-----AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
Reference ( family-1876 ) : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAAT-CCAAATA-TGAACGAGTTA-TAAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAA-TTTCAT-AAAA-ATAC---TTAT-CAT--A-C--ACATG--T------T--TTCTA-ATGT-T-CATAAAGGGAAATTA-TTAT-ATCCTAC-TACT-TCT----CTCTTT-------A--------CT-----AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
gi|1 : AGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTCATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAAT-CCAAATA-TGAACGAGTTA-TTAACTGTCTTACACC----TCACAGAATAA-AACA---AAGTGAA-TTTCAT-AAAA-TTAA---TTAT-CAT--A-C--ATATG--TAGAAA-A--TAATACGTGT-A-CATAAAGGGAAATTA-T--T-ATC---C-TACT-TCT----CTCTTTAAAAAAAA--------C------AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTTT-GATCCACCAAGCACA-TTA-T-CTGATCCTTACCAA-TCTCTAGTTC--TGC-TGC-AA-TCTTGT----AGA-A----TT-----TC-------TTCATTAAG-GATA---TT-AA-AACTCGA-GTTCATGATCC--A-TC---GGAGGTTATTGTTCTTG
gi|10 : C--TTAGGGAAGTTAT-GA-TAGTGGCCACATAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAAT-CCAAATA-TGAACGAGTTA-TAAACTGTATTACACT----TCACAGAGTAA-AAGA---AGGTGAT-TTTCAT-AAAA-AT-----------AT--G-C--ACA--------------TTCTA-ATGT-T-CATGTAGAAAAgttaaagcgtaaatggtcgtagcgttccgccatctcagcctacatttgagtgagtccacacaccaattaggatgtcccgcatactactcgtgtacgctcaacatcaaaacct
gi|11 : AGTCAAACCAGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTCAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAAT-CCAAATA-TGAATGAGTTA-TTGACTGTCTTAAACT----TCTCAGAGTAA-AACT---AGGTGAA-TTTCAT-AAAA-TTAC---TGAT-CAT--A-CATACATG--T------taatgcatgtacatgttttattgctgaaaaaggaaattattag
gi|12 : AACAAG------AAA-TACAGTCAAACCTGTTTTAAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTA-----------------TTCCAGTGTGCCTTAAGCTGTAAACAGCCAGACCAAT-CGATATA-TGAACAAGTTA-TAAACTTTAGAACACT----TCACAGAGTAA-AATATTTAGGTGAA-TTTCAT-AAAA-ATatgtagaaaacaatacgtgt
gi|13 : aaaatcattaccatattgtattcatAGTCAAACCTGTTTTCAGAGGCCACC--TTATGGAAGTTAT-GA-AAGTGGTCACTTAAGACAGGTGGCCTCTTATTCCAGTTTACC-----CTGTAGACAGCCAT-TCAAT-CCAAATA-TGGATGAGTTA-TAAACTGTCTTACACT----TCACAGAGTAA-AATA---AAGTGAA-TTTCAT-AAAA-
gi|14 : -----AA-----------CA-AGGTAAT--TAATTGTATTCTGTTTCATTCTG-TAA-T-AATTTAAGTCGTCGTTGTTTT--CTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGCAAA-TCTTGT---GAGATg
gi|15 : caAA-----CATA-TACAGTCAAACCTGCATAAAGAGACCGTCCATTGGAG----TACAGATAAGGGGTCACATATGACAGGTGGTTTCTTAT
gi|16 : aaagtgcattggagctg-TTATT--TGAGTCTTGTCAA-CATTTCATTC--TGT-TGC-AA-TCTTGCAAGAAGATATAACTTTTTTATCCAGATGAATCACTATG-ATTT---Tca
gi|17 : AAT-TACAGTCAAACCTGTTTTCAGAGGTCACT--TTAGGGAAGTTAT-AA-AAGTGGCCACATAA
gi|19 : GTCAAACCTGTCTTAAGAGGCTACC--TTGGGGATTTCAT-AA-AA
gi|2 : TCAAAC-TGTTTTCAGAGGCCACC--TTA-GGAAGTTAT-GA-AAGTGCCAACTT-AGACAGGT-GCCTCTCATTCCAGTTTGCC-----CTGT-GAC-GCCTG-TCAATCCCAAATATTGAGCAAGTTATTAAACTGTCTTACACT----TCACAGAGTAAGAACC---AAATGAATTTTCAT-AAAATTTGCA--TTATCCAT--ATT--ATATG--TAGAAAATAATACT---TGT-TACATAAAGGAAAATTA-TTAT----CCA-----T-TCT----CTCTTT-------AAAAAAAACCC-----AAAAACCCCAAACCA-AGGTCAT--TAA------------TCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTTTCTTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-TATCTAATTCCTTGCTTGC-AA-TCTTGT---GAGA-------------------TT-TTCATTAGG-ATTTTTCTT-AATAACTCGACGTC--AGATTC--AT-----GGAGGTTGTTGTTTT
gi|3 : agtAAAAAGATTACCAAC-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTGT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAAT-CCAAATA-TGAACGAGTTA-TAAACTGTCTTACACT----TCACAGAGTAC-AACA---AAGTGAA-TTTCAT-AAAA-TTAC---TTGT-CAT--A-C--ACATG--T------T--TTCT---TGT-T-TA-AAAGGGAAATTATTTAT-ACCCTATGTACT-TCT----CTCTT-----------------CT-----AA-----------CA-AGGTCAT--AAATTGTTTTCTGTTTGTTTCTG-TAA-T-AA-----GTCGTCACTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTCC---GAGATATACCTT-----TCACGGTT-TTCACTAGG-ATTT---TTAAA-AACTCGA-GTCCAGGATTCATATTCAAGGGAGG--GTTTTTTTTggtaaagcctggtaaatgtgtaaagttgccatctcagctatattttttgtagtcccaaaacaattaggattgtcccgccattacttactgtggtacgctaaccgtcaaaa
gi|4 : taaaatcagtttaacataGAAAGTA-TTATTATCCTACGTACT-TCT----TTTTTT-------A--------TTCTTAAAA-----------CA-AGGTCAT--TAAAAGTTTTCGGTTTGTTTCTG-TAAAT-AA-----GTCGTCGCTG-TTT--CTTTTCGGGTC-------CACATTTATT-CTGAGTCTTACCAA-CATTCAATT-----C-TGC-AATTCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACAAGG-ATTtgt
gi|5 : catatgtaTTTAT-AAAA-ATAC---TGAT-CAT--A-C--ATATGCAC------A--TTCTA-ATGT-C-CATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacctactgtgtacggctcacgtcaaaacaacactt
gi|5 : taaaatttcataattttcAAA-ATA------ATACAT--G-T--ACATG--T------T--TT----ATTTAT-CAGAAAGA-AAATTA-T-A--AGCCTAC-TTCTGTCTGGTTTTTTTT-------T--------TT-----AA--------------AGTCCATGATAATTGTTTTCTGTTTGTCTCTG-TAA-T-GT-----GTCATCACTGTTTT--CTTTTTGGATC-------AACA-ATAT--------------AA-CATTAAATTC--TGC-TGC-AA-TCTTGT---GAGATATACTTT-----TCAAGGTT-TTCTCTAGGAATTT---TT-CA-AACTTGA-GTgtagaaaataatacatgtacatgttttatttatcagaaagaaaattataagcctacttctgtctggtttttttttttaaagtccatgataattgttttctgtttgtctctgtaatgtgtcatcactgttttctttttggatcaacaatataacattaaattctgctgcaatcttgtgagatatacttttcaaggttttctctaggaatttttcaaacttgagt
gi|6 : taaaatttcataattttctttataaaaatactgatcatacatatgcacattctaatgtccatgtagCTTATTCCAGTTTGCC-----CTGTAAACAGCCAG-ACAAT-CAATATG-TGAACAAATTA-TAAATTTTATTGCACTTGGATGACAGGGTAA-AATA---AGGTGAA-ATTAAT-AAAA-ATGCAAATT-T-CA---A-T--AC-TG--T------T--TCC----TGT----A-AAAGGGGCCCCA---AT-AT------TACA-TTT----ATCTTT-------AAACCATCCCT-----AA-----------CATAAACCAT--TTA----TTTCTCCTT-TTCCCG-TAA-C-GT-----TTCATCGCAGTTTT--CTTTCTGGATC-------AACA-TTATT-TTAA
gi|7 : AAAAAG-----CAAAATACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAATAAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAAT-CGATATA-TGAACAAGTTT-TAAAACGTATTTTACT----TCACAGAGTAA-AAGA---AGGTGAC-TTT--T-AGA----------TAT-TGTGGA-C--ACATG--T------aaatcctccagatattcagcttttcgtttca
gi|8 : aaaagagaattagtggtgtggaattctgag-----------CA-AGGTAAT--TAATTATT--CTGTTCATTCTTAATAA-TTAA-----GTCGTC--TGTTT---CTTTCTGAATC-------CACA-TTATTCCTGAGTCTTACCAATCATTTAATTC--TGC-TGC-AA--ATTGT---GAGATa
gi|9 : caaaccCAAATCTGTTTTAAGAGACCACG--TTAGAAAAGTTAT-GA-AAATGGCTACTTATGACATGTGGCCTAATATTCCAGTTTGCT-----TTGCAAACAACAAG-TCAAT-CAATATA-TGAACAAGTTA-TAAACCATATTACACT----TCACAGAGTAA-AACA---AGGTGAT-TTTCATAAAAA-ATAC---TTAT-TAT--A-C--GTATGCAT------A--TTCTA-ATGT-T-Ctggttgtttttgttattttttggcaaagccttaatgtgtaaaggttgcattctcaagcttaaatttgtatgagtccccaataacaattagattggtcccgcatca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAACAAGTATGAACTTAGCCATCATTGTGTCATCTGTTTTATTTTCA
Unaligned ( gi|20 ): TATCATATTTATAAGTTAACTTTTTCTTACA
Alignments
lowQualScore : 222222 11111 11111 3333333333333333333 111 44444444444444 1111 888888888888888888888888888888888888 11111 1111111 11111 11 111 1 1 1 444444444
lowQualScore : 777777 99 44 3 3 0 00000 4 4 1 4 4 1 8888 4 777 4 3 66 44444 0 8 55 4 55 9999999999999999999 222 8 1 22222222222222 6 4444 666666666666666666666666666666666666 5 66 66 0 5 5 5 5 22222 0 66 6666666 4 44 5 66 5 5 5 888 3 5555 66666 00 1 6 6 444 0 0 0 6 1 555555555 7
lowQualScore : ...... .. .. . . . ..... . . . . . . .... . ... . . .. ..... . . .. . .. ................... ... . . .............. . .... .................................... . .. .. . . . . . ..... . .. ....... . .. . .. . . . ... . .... ..... .. . . . ... . . . . . ......... .
lowQualScore : 555555 00 66 3 3 2 00000 0 0 4 0 0 0 5555 0 000 0 6 00 88888 6 0 55 0 55 0000000000000000000 222 4 7 77777777777777 7 2222 444444444444444444444444444444444444 0 99 88 1 9 0 0 0 55555 2 99 2222222 4 66 0 99 0 0 0 888 2 7777 77777 22 0 7 7 000 0 0 0 7 0 777777777 3
consensus : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAAT-CCAAATA-TGAACGAGTTA-TAAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAA-TTTCAT-AAAA-ATAC---TTAT-CAT--A-C--ACATG--T--------ATTCTA-ATGT-T-CATAAAGGGAAATTA-TTAT-ATCCTAC-TACT-TCT----CTCTTT-------A--------CT-----AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
Reference ( family-1876 ) : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAAT-CCAAATA-TGAACGAGTTA-TAAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAA-TTTCAT-AAAA-ATAC---TTAT-CAT--A-C--ACATG--T--------NTTCTA-ATGT-T-CATAAAGGGAAATTA-TTAT-ATCCTAC-TACT-TCT----CTCTTT-------A--------CT-----AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
gi|1 : AGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTCATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAAT-CCAAATA-TGAACGAGTTA-TTAACTGTCTTACACC----TCACAGAATAA-AACA---AAGTGAA-TTTCAT-AAAA-TTAA---TTAT-CAT--A-C--ATATG--TAGAAA---ATAATACGTGT-A-CATAAAGGGAAATTA-T--T-ATC---C-TACT-TCT----CTCTTTAAAAAAAA--------C------AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTTT-GATCCACCAAGCACA-TTA-T-CTGATCCTTACCAA-TCTCTAGTTC--TGC-TGC-AA-TCTTGT----AGA-A----TT-----TC-------TTCATTAAG-GATA---TT-AA-AACTCGA-GTTCATGATCC--A-TC---GGAGGTTATTGTTCTTG
gi|10 : C--TTAGGGAAGTTAT-GA-TAGTGGCCACATAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAAT-CCAAATA-TGAACGAGTTA-TAAACTGTATTACACT----TCACAGAGTAA-AAGA---AGGTGAT-TTTCAT-AAAA-AT-----------AT--G-C--ACA--------------TTCTA-ATGT-T-CATGTAGAAAAgttaaagcgtaaatggtcgtagcgttccgccatctcagcctacatttgagtgagtccacacaccaattaggatgtcccgcatactactcgtgtacgctcaacatcaaaacct
gi|11 : AGTCAAACCAGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTCAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAAT-CCAAATA-TGAATGAGTTA-TTGACTGTCTTAAACT----TCTCAGAGTAA-AACT---AGGTGAA-TTTCAT-AAAA-TTAC---TGAT-CAT--A-CATACATG--T--------ATtaatgcatgtacatgttttattgctgaaaaaggaaattattag
gi|12 : AACAAG------AAA-TACAGTCAAACCTGTTTTAAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTA-----------------TTCCAGTGTGCCTTAAGCTGTAAACAGCCAGACCAAT-CGATATA-TGAACAAGTTA-TAAACTTTAGAACACT----TCACAGAGTAA-AATATTTAGGTGAA-TTTCAT-AAAA-ATgtagaaaacaatacgtgt
gi|13 : aaaatcattaccatattgtattcatAGTCAAACCTGTTTTCAGAGGCCACC--TTATGGAAGTTAT-GA-AAGTGGTCACTTAAGACAGGTGGCCTCTTATTCCAGTTTACC-----CTGTAGACAGCCAT-TCAAT-CCAAATA-TGGATGAGTTA-TAAACTGTCTTACACT----TCACAGAGTAA-AATA---AAGTGAA-TTTCAT-AAAA-
gi|14 : -----AA-----------CA-AGGTAAT--TAATTGTATTCTGTTTCATTCTG-TAA-T-AATTTAAGTCGTCGTTGTTTT--CTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGCAAA-TCTTGT---GAGATg
gi|15 : caAA-----CATA-TACAGTCAAACCTGCATAAAGAGACCGTCCATTGGAG----TACAGATAAGGGGTCACATATGACAGGTGGTTTCTTAT
gi|16 : aaagtgcattggagctg-TTATT--TGAGTCTTGTCAA-CATTTCATTC--TGT-TGC-AA-TCTTGCAAGAAGATATAACTTTTTTATCCAGATGAATCACTATG-ATTT---Tca
gi|17 : AAT-TACAGTCAAACCTGTTTTCAGAGGTCACT--TTAGGGAAGTTAT-AA-AAGTGGCCACATAA
gi|19 : GTCAAACCTGTCTTAAGAGGCTACC--TTGGGGATTTCAT-AA-AA
gi|2 : TCAAAC-TGTTTTCAGAGGCCACC--TTA-GGAAGTTAT-GA-AAGTGCCAACTT-AGACAGGT-GCCTCTCATTCCAGTTTGCC-----CTGT-GAC-GCCTG-TCAATCCCAAATATTGAGCAAGTTATTAAACTGTCTTACACT----TCACAGAGTAAGAACC---AAATGAATTTTCAT-AAAATTTGCA--TTATCCAT--ATT--ATATG--TAGAAAATAATACT---TGT-TACATAAAGGAAAATTA-TTAT----CCA-----T-TCT----CTCTTT-------AAAAAAAACCC-----AAAAACCCCAAACCA-AGGTCAT--TAA------------TCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTTTCTTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-TATCTAATTCCTTGCTTGC-AA-TCTTGT---GAGA-------------------TT-TTCATTAGG-ATTTTTCTT-AATAACTCGACGTC--AGATTC--AT-----GGAGGTTGTTGTTTT
gi|3 : agtAAAAAGATTACCAAC-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTGT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAAT-CCAAATA-TGAACGAGTTA-TAAACTGTCTTACACT----TCACAGAGTAC-AACA---AAGTGAA-TTTCAT-AAAA-TTAC---TTGT-CAT--A-C--ACATG--T--------TTTCT---TGT-T-TA-AAAGGGAAATTATTTAT-ACCCTATGTACT-TCT----CTCTT-----------------CT-----AA-----------CA-AGGTCAT--AAATTGTTTTCTGTTTGTTTCTG-TAA-T-AA-----GTCGTCACTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTCC---GAGATATACCTT-----TCACGGTT-TTCACTAGG-ATTT---TTAAA-AACTCGA-GTCCAGGATTCATATTCAAGGGAGG--GTTTTTTTTggtaaagcctggtaaatgtgtaaagttgccatctcagctatattttttgtagtcccaaaacaattaggattgtcccgccattacttactgtggtacgctaaccgtcaaaa
gi|4 : taaaatcagtttaacataGAAAGTA-TTATTATCCTACGTACT-TCT----TTTTTT-------A--------TTCTTAAAA-----------CA-AGGTCAT--TAAAAGTTTTCGGTTTGTTTCTG-TAAAT-AA-----GTCGTCGCTG-TTT--CTTTTCGGGTC-------CACATTTATT-CTGAGTCTTACCAA-CATTCAATT-----C-TGC-AATTCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACAAGG-ATTtgt
gi|5 : catatgtaTTTAT-AAAA-ATAC---TGAT-CAT--A-C--ATATGCAC--------ATTCTA-ATGT-C-CATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacctactgtgtacggctcacgtcaaaacaacactt
gi|5 : taaaatttcataattttcAAA-ATA------ATACAT--G-T--ACATG--T--------TTT----ATTTAT-CAGAAAGA-AAATTA-T-A--AGCCTAC-TTCTGTCTGGTTTTTTTT-------T--------TT-----AA--------------AGTCCATGATAATTGTTTTCTGTTTGTCTCTG-TAA-T-GT-----GTCATCACTGTTTT--CTTTTTGGATC-------AACA-ATAT--------------AA-CATTAAATTC--TGC-TGC-AA-TCTTGT---GAGATATACTTT-----TCAAGGTT-TTCTCTAGGAATTT---TT-CA-AACTTGA-GTgtagaaaataatacatgtacatgttttatttatcagaaagaaaattataagcctacttctgtctggtttttttttttaaagtccatgataattgttttctgtttgtctctgtaatgtgtcatcactgttttctttttggatcaacaatataacattaaattctgctgcaatcttgtgagatatacttttcaaggttttctctaggaatttttcaaacttgagt
gi|6 : taaaatttcataattttctttataaaaatactgatcatacatatgcacattctaatgtccatgtagCTTATTCCAGTTTGCC-----CTGTAAACAGCCAG-ACAAT-CAATATG-TGAACAAATTA-TAAATTTTATTGCACTTGGATGACAGGGTAA-AATA---AGGTGAA-ATTAAT-AAAA-ATGCAAATT-T-CA---A-T--AC-TG--T--------TTCC----TGT----A-AAAGGGGCCCCA---AT-AT------TACA-TTT----ATCTTT-------AAACCATCCCT-----AA-----------CATAAACCAT--TTA----TTTCTCCTT-TTCCCG-TAA-C-GT-----TTCATCGCAGTTTT--CTTTCTGGATC-------AACA-TTATT-TTAA
gi|7 : AAAAAG-----CAAAATACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAATAAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAAT-CGATATA-TGAACAAGTTT-TAAAACGTATTTTACT----TCACAGAGTAA-AAGA---AGGTGAC-TTT--T-AGA----------TAT-TGTGGA-C--ACATG--T--------aaatcctccagatattcagcttttcgtttca
gi|8 : aaaagagaattagtggtgtggaattctgag-----------CA-AGGTAAT--TAATTATT--CTGTTCATTCTTAATAA-TTAA-----GTCGTC--TGTTT---CTTTCTGAATC-------CACA-TTATTCCTGAGTCTTACCAATCATTTAATTC--TGC-TGC-AA--ATTGT---GAGATa
gi|9 : caaaccCAAATCTGTTTTAAGAGACCACG--TTAGAAAAGTTAT-GA-AAATGGCTACTTATGACATGTGGCCTAATATTCCAGTTTGCT-----TTGCAAACAACAAG-TCAAT-CAATATA-TGAACAAGTTA-TAAACCATATTACACT----TCACAGAGTAA-AACA---AGGTGAT-TTTCATAAAAA-ATAC---TTAT-TAT--A-C--GTATGCAT--------ATTCTA-ATGT-T-Ctggttgtttttgttattttttggcaaagccttaatgtgtaaaggttgcattctcaagcttaaatttgtatgagtccccaataacaattagattggtcccgcatca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAACAAGTATGAACTTAGCCATCATTGTGTCATCTGTTTTATTTTCA
Unaligned ( gi|20 ): TATCATATTTATAAGTTAACTTTTTCTTACA
Alignments
lowQualScore : 222222 11111 111111 3333333333333333333 111 444444444 1111 8888888888888888888888888888 11111 1111111 11111 11 111 1 1 1 444444444
lowQualScore : 777777 99 44 3 3 4 00000 4 4 1 4 4 1 8888 4 777 3 3 2 888888 0 4 4 55 99 0 4444444444444444444 222 8 1 999 333333333 6 4444 7777777777777777777777777777 5 66 66 0 5 5 5 5 22222 0 66 6666666 4 44 5 66 5 5 5 888 3 5555 66666 00 1 6 6 444 0 0 0 6 1 555555555 7
lowQualScore : ...... .. .. . . . ..... . . . . . . .... . ... . . . ...... . . . .. .. . ................... ... . . ... ......... . .... ............................ . .. .. . . . . . ..... . .. ....... . .. . .. . . . ... . .... ..... .. . . . ... . . . . . ......... .
lowQualScore : 555555 00 66 3 3 6 00000 0 0 4 0 0 0 5555 0 000 6 6 6 444444 6 0 0 55 55 8 5555555555555555555 222 4 7 000 555555555 7 2222 0000000000000000000000000000 0 99 88 1 9 0 0 0 55555 2 99 2222222 4 66 0 99 0 0 0 888 2 7777 77777 22 0 7 7 000 0 0 0 7 0 777777777 3
consensus : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAATTT-CAT-AAAAAT-AC---TTAT-C-AT--AC--ACATG--TA--------TTCTA-ATGT-T-CATAAAGGGAAATTA-TTAT-ATCCTAC-TACT-TCT----CTCTTTAAA--A---CT-----AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
Reference ( family-1876 ) : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAATTT-CAT-AAAAAT-AC---TTAT-C-AT--AC--ACATG--TA--------TTCTA-ATGT-T-CATAAAGGGAAATTA-TTAT-ATCCTAC-TACT-TCT----CTCTTTA--------CT-----AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
gi|1 : AGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTCATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-TAACTGTCTTACACC----TCACAGAATAA-AACA---AAGTGAATTT-CAT-AAAATT-AA---TTAT-C-AT--AC--ATATG--TAGAAAA---TAATACGTGT-A-CATAAAGGGAAATTA-TTAT----C--C-TACT-TCT----CTCTTTAAAAAAAA-C------AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTTT-GATCCACCAAGCACA-TTA-T-CTGATCCTTACCAA-TCTCTAGTTC--TGC-TGC-AA-TCTTGT----AGA-A----TT-----TC-------TTCATTAAG-GATA---TT-AA-AACTCGA-GTTCATGATCC--A-TC---GGAGGTTATTGTTCTTG
gi|10 : C--TTAGGGAAGTTAT-GA-TAGTGGCCACATAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTATTACACT----TCACAGAGTAA-AAGA---AGGTGATTTT-CAT-AAAAAT-------------AT--GC--AC------A--------TTCTA-ATGT-T-CATGTAGAAAAgttaaagcgtaaatggtcgtagcgttccgccatctcagcctacatttgagtgagtccacacaccaattaggatgtcccgcatactactcgtgtacgctcaacatcaaaacct
gi|11 : AGTCAAACCAGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTCAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAATGAGTTAT-TGACTGTCTTAAACT----TCTCAGAGTAA-AACT---AGGTGAATTT-CAT-AAAATT-AC---TGAT-C-AT--ACATACATG--TA--------Ttaatgcatgtacatgttttattgctgaaaaaggaaattattag
gi|12 : AACAAG------AAA-TACAGTCAAACCTGTTTTAAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTA-----------------TTCCAGTGTGCCTTAAGCTGTAAACAGCCAGACCAATCG-ATATAT-GAACAAGTTAT-AAACTTTAGAACACT----TCACAGAGTAA-AATATTTAGGTGAATTT-CAT-AAAAAT-gtagaaaacaatacgtgt
gi|13 : aaaatcattaccatattgtattcatAGTCAAACCTGTTTTCAGAGGCCACC--TTATGGAAGTTAT-GA-AAGTGGTCACTTAAGACAGGTGGCCTCTTATTCCAGTTTACC-----CTGTAGACAGCCAT-TCAATCC-AAATAT-GGATGAGTTAT-AAACTGTCTTACACT----TCACAGAGTAA-AATA---AAGTGAATTT-CAT-AAAA
gi|14 : -----AA-----------CA-AGGTAAT--TAATTGTATTCTGTTTCATTCTG-TAA-T-AATTTAAGTCGTCGTTGTTTT--CTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGCAAA-TCTTGT---GAGATg
gi|15 : caAA-----CATA-TACAGTCAAACCTGCATAAAGAGACCGTCCATTGGAG----TACAGATAAGGGGTCACATATGACAGGTGGTTTCTTAT
gi|16 : aaagtgcattggagctg-TTATT--TGAGTCTTGTCAA-CATTTCATTC--TGT-TGC-AA-TCTTGCAAGAAGATATAACTTTTTTATCCAGATGAATCACTATG-ATTT---Tca
gi|17 : AAT-TACAGTCAAACCTGTTTTCAGAGGTCACT--TTAGGGAAGTTAT-AA-AAGTGGCCACATAA
gi|19 : GTCAAACCTGTCTTAAGAGGCTACC--TTGGGGATTTCAT-AA-AA
gi|2 : TCAAAC-TGTTTTCAGAGGCCACC--TTAGG-AAGTTAT-GA-AAGTGCCAACTTA-GACAGGTG-CCTCTCATTCCAGTTTGCC-----CTGT-GAC-GCCTG-TCAATCCCAAATATTGAGCAAGTTATTAAACTGTCTTACACT----TCACAGAGTAAGAACC---AAATGAATTTTCAT-AAAATTTGCA--TTAT-CCAT--ATT-ATATG--TAGAAAATAATACT---TGT-TACATAAAGGAAAATTA-TTAT----CCA-----T-TCT----CTCTTTAAAAAAAACCC-----AAAAACCCCAAACCA-AGGTCAT--TAA------------TCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTTTCTTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-TATCTAATTCCTTGCTTGC-AA-TCTTGT---GAGA-------------------TT-TTCATTAGG-ATTTTTCTT-AATAACTCGACGTC--AGATTC--AT-----GGAGGTTGTTGTTTT
gi|3 : agtAAAAAGATTACCAAC-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTGT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTCTTACACT----TCACAGAGTAC-AACA---AAGTGAATTT-CAT-AAAATT-AC---TTGT-C-AT--AC--ACATG--TT--------TTCT---TGT-T-TA-AAAGGGAAATTATTTAT-ACCCTATGTACT-TCT----CTCTT----------CT-----AA-----------CA-AGGTCAT--AAATTGTTTTCTGTTTGTTTCTG-TAA-T-AA-----GTCGTCACTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTCC---GAGATATACCTT-----TCACGGTT-TTCACTAGG-ATTT---TTAAA-AACTCGA-GTCCAGGATTCATATTCAAGGGAGG--GTTTTTTTTggtaaagcctggtaaatgtgtaaagttgccatctcagctatattttttgtagtcccaaaacaattaggattgtcccgccattacttactgtggtacgctaaccgtcaaaa
gi|4 : taaaatcagtttaacataGAAAGTA-TTATTATCCTACGTACT-TCT----TTTTTTA--------TTCTTAAAA-----------CA-AGGTCAT--TAAAAGTTTTCGGTTTGTTTCTG-TAAAT-AA-----GTCGTCGCTG-TTT--CTTTTCGGGTC-------CACATTTATT-CTGAGTCTTACCAA-CATTCAATT-----C-TGC-AATTCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACAAGG-ATTtgt
gi|5 : catatgtaTT-TAT-AAAAAT-AC---TGAT-C-AT--AC--ATATGCACA--------TTCTA-ATGT-C-CATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacctactgtgtacggctcacgtcaaaacaacactt
gi|5 : taaaatttcataattttcAAAAT-A------ATAC-AT--GT--ACATG--TT--------TT----ATTTAT-CAGAAAGA-AAATTA-T-A--AGCCTAC-TTCTGTCTGGTTTTTTTTT--------TT-----AA--------------AGTCCATGATAATTGTTTTCTGTTTGTCTCTG-TAA-T-GT-----GTCATCACTGTTTT--CTTTTTGGATC-------AACA-ATAT--------------AA-CATTAAATTC--TGC-TGC-AA-TCTTGT---GAGATATACTTT-----TCAAGGTT-TTCTCTAGGAATTT---TT-CA-AACTTGA-GTgtagaaaataatacatgtacatgttttatttatcagaaagaaaattataagcctacttctgtctggtttttttttttaaagtccatgataattgttttctgtttgtctctgtaatgtgtcatcactgttttctttttggatcaacaatataacattaaattctgctgcaatcttgtgagatatacttttcaaggttttctctaggaatttttcaaacttgagt
gi|6 : taaaatttcataattttctttataaaaatactgatcatacatatgcacattctaatgtccatgtagCTTATTCCAGTTTGCC-----CTGTAAACAGCCAG-ACAATCA-ATATGT-GAACAAATTAT-AAATTTTATTGCACTTGGATGACAGGGTAA-AATA---AGGTGAAATT-AAT-AAAAAT-GCAAATT-T-C-A---AT--AC-TG--T---------TTCC---TGT----A-AAAGGGGCCCCA---AT-AT------TACA-TTT----ATCTTTAAACCATCCCT-----AA-----------CATAAACCAT--TTA----TTTCTCCTT-TTCCCG-TAA-C-GT-----TTCATCGCAGTTTT--CTTTCTGGATC-------AACA-TTATT-TTAA
gi|7 : AAAAAG-----CAAAATACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAATAAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCG-ATATAT-GAACAAGTTTT-AAAACGTATTTTACT----TCACAGAGTAA-AAGA---AGGTGACTTT---T-AGA----------TAT-T-GTGGAC--ACATG--TA--------aaatcctccagatattcagcttttcgtttca
gi|8 : aaaagagaattagtggtgtggaattctgag-----------CA-AGGTAAT--TAATTATT--CTGTTCATTCTTAATAA-TTAA-----GTCGTC--TGTTT---CTTTCTGAATC-------CACA-TTATTCCTGAGTCTTACCAATCATTTAATTC--TGC-TGC-AA--ATTGT---GAGAT
gi|9 : caaaccCAAATCTGTTTTAAGAGACCACG--TTAGAAAAGTTAT-GA-AAATGGCTACTTATGACATGTGGCCTAATATTCCAGTTTGCT-----TTGCAAACAACAAG-TCAATCA-ATATAT-GAACAAGTTAT-AAACCATATTACACT----TCACAGAGTAA-AACA---AGGTGATTTT-CATAAAAAAT-AC---TTAT-T-AT--AC--GTATGCATA--------TTCTA-ATGT-T-Ctggttgtttttgttattttttggcaaagccttaatgtgtaaaggttgcattctcaagcttaaatttgtatgagtccccaataacaattagattggtcccgcatca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAACAAGTATGAACTTAGCCATCATTGTGTCATCTGTTTTATTTTCA
Unaligned ( gi|20 ): TATCATATTTATAAGTTAACTTTTTCTTACA
Alignments
lowQualScore : 222222 11111 111111 3333333333333333333 111 4444444444444444444 7777777777777777777777777777777 11111 1111111 11111 11 111 1 1 1 444444444
lowQualScore : 777777 99 44 3 3 4 00000 4 4 1 4 4 1 8888 4 777 3 3 2 888888 0 4 4 55 99 0 4444444444444444444 222 8 1 999 6666666666666666666 8888888888888888888888888888888 5 66 66 0 5 5 5 5 22222 0 66 6666666 4 44 5 66 5 5 5 888 3 5555 66666 00 1 6 6 444 0 0 0 6 1 555555555 7
lowQualScore : ...... .. .. . . . ..... . . . . . . .... . ... . . . ...... . . . .. .. . ................... ... . . ... ................... ............................... . .. .. . . . . . ..... . .. ....... . .. . .. . . . ... . .... ..... .. . . . ... . . . . . ......... .
lowQualScore : 555555 00 66 3 3 6 00000 0 0 4 0 0 0 5555 0 000 6 6 6 444444 6 0 0 55 55 8 5555555555555555555 222 4 7 000 5555555555555555555 3333333333333333333333333333333 0 99 88 1 9 0 0 0 55555 2 99 2222222 4 66 0 99 0 0 0 888 2 7777 77777 22 0 7 7 000 0 0 0 7 0 777777777 3
consensus : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAATTT-CAT-AAAAAT-AC---TTAT-C-AT--AC--ACATG--TA--------TTCTA-ATGT-T-CATAAAGGGAAATTA-TTAT-ATCCTAC-TACT------TCTCTCTTTA-----AA--A-----CTAA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
Reference ( family-1876 ) : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAATTT-CAT-AAAAAT-AC---TTAT-C-AT--AC--ACATG--TA--------TTCTA-ATGT-T-CATAAAGGGAAATTA-TTAT-ATCCTAC-TACT------TCTCTCTTTA-----AA--A-----CTAA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
gi|1 : AGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTCATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-TAACTGTCTTACACC----TCACAGAATAA-AACA---AAGTGAATTT-CAT-AAAATT-AA---TTAT-C-AT--AC--ATATG--TAGAAAA---TAATACGTGT-A-CATAAAGGGAAATTA-TTAT----C--C-TACT------TCTCTCTTTA-----AA--AAAAA-C-AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTTT-GATCCACCAAGCACA-TTA-T-CTGATCCTTACCAA-TCTCTAGTTC--TGC-TGC-AA-TCTTGT----AGA-A----TT-----TC-------TTCATTAAG-GATA---TT-AA-AACTCGA-GTTCATGATCC--A-TC---GGAGGTTATTGTTCTTG
gi|10 : C--TTAGGGAAGTTAT-GA-TAGTGGCCACATAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTATTACACT----TCACAGAGTAA-AAGA---AGGTGATTTT-CAT-AAAAAT-------------AT--GC--AC------A--------TTCTA-ATGT-T-CATGTAGAAAAgttaaagcgtaaatggtcgtagcgttccgccatctcagcctacatttgagtgagtccacacaccaattaggatgtcccgcatactactcgtgtacgctcaacatcaaaacct
gi|11 : AGTCAAACCAGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTCAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAATGAGTTAT-TGACTGTCTTAAACT----TCTCAGAGTAA-AACT---AGGTGAATTT-CAT-AAAATT-AC---TGAT-C-AT--ACATACATG--TA--------Ttaatgcatgtacatgttttattgctgaaaaaggaaattattag
gi|12 : AACAAG------AAA-TACAGTCAAACCTGTTTTAAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTA-----------------TTCCAGTGTGCCTTAAGCTGTAAACAGCCAGACCAATCG-ATATAT-GAACAAGTTAT-AAACTTTAGAACACT----TCACAGAGTAA-AATATTTAGGTGAATTT-CAT-AAAAAT-gtagaaaacaatacgtgt
gi|13 : aaaatcattaccatattgtattcatAGTCAAACCTGTTTTCAGAGGCCACC--TTATGGAAGTTAT-GA-AAGTGGTCACTTAAGACAGGTGGCCTCTTATTCCAGTTTACC-----CTGTAGACAGCCAT-TCAATCC-AAATAT-GGATGAGTTAT-AAACTGTCTTACACT----TCACAGAGTAA-AATA---AAGTGAATTT-CAT-AAAA
gi|14 : AA-----------CA-AGGTAAT--TAATTGTATTCTGTTTCATTCTG-TAA-T-AATTTAAGTCGTCGTTGTTTT--CTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGCAAA-TCTTGT---GAGATg
gi|15 : caAA-----CATA-TACAGTCAAACCTGCATAAAGAGACCGTCCATTGGAG----TACAGATAAGGGGTCACATATGACAGGTGGTTTCTTAT
gi|16 : aaagtgcattggagctg-TTATT--TGAGTCTTGTCAA-CATTTCATTC--TGT-TGC-AA-TCTTGCAAGAAGATATAACTTTTTTATCCAGATGAATCACTATG-ATTT---Tca
gi|17 : AAT-TACAGTCAAACCTGTTTTCAGAGGTCACT--TTAGGGAAGTTAT-AA-AAGTGGCCACATAA
gi|19 : GTCAAACCTGTCTTAAGAGGCTACC--TTGGGGATTTCAT-AA-AA
gi|2 : TCAAAC-TGTTTTCAGAGGCCACC--TTAGG-AAGTTAT-GA-AAGTGCCAACTTA-GACAGGTG-CCTCTCATTCCAGTTTGCC-----CTGT-GAC-GCCTG-TCAATCCCAAATATTGAGCAAGTTATTAAACTGTCTTACACT----TCACAGAGTAAGAACC---AAATGAATTTTCAT-AAAATTTGCA--TTAT-CCAT--ATT-ATATG--TAGAAAATAATACT---TGT-TACATAAAGGAAAATTA-TTAT----CCA-----T------TCTCTCTTTA-----AA--AAAAACCCAAAAACCCCAAACCA-AGGTCAT--TAA------------TCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTTTCTTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-TATCTAATTCCTTGCTTGC-AA-TCTTGT---GAGA-------------------TT-TTCATTAGG-ATTTTTCTT-AATAACTCGACGTC--AGATTC--AT-----GGAGGTTGTTGTTTT
gi|3 : agtAAAAAGATTACCAAC-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTGT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTCTTACACT----TCACAGAGTAC-AACA---AAGTGAATTT-CAT-AAAATT-AC---TTGT-C-AT--AC--ACATG--TT--------TTCT---TGT-T-TA-AAAGGGAAATTATTTAT-ACCCTATGTACT------TCTCTCTT-----------------CTAA-----------CA-AGGTCAT--AAATTGTTTTCTGTTTGTTTCTG-TAA-T-AA-----GTCGTCACTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTCC---GAGATATACCTT-----TCACGGTT-TTCACTAGG-ATTT---TTAAA-AACTCGA-GTCCAGGATTCATATTCAAGGGAGG--GTTTTTTTTggtaaagcctggtaaatgtgtaaagttgccatctcagctatattttttgtagtcccaaaacaattaggattgtcccgccattacttactgtggtacgctaaccgtcaaaa
gi|4 : taaaatcagtttaacataGAAAGTA-TTATTATCCTACGTACT------TCTTTTTTTATTCTTAA--A--------A-----------CA-AGGTCAT--TAAAAGTTTTCGGTTTGTTTCTG-TAAAT-AA-----GTCGTCGCTG-TTT--CTTTTCGGGTC-------CACATTTATT-CTGAGTCTTACCAA-CATTCAATT-----C-TGC-AATTCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACAAGG-ATTtgt
gi|5 : catatgtaTT-TAT-AAAAAT-AC---TGAT-C-AT--AC--ATATGCACA--------TTCTA-ATGT-C-CATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacctactgtgtacggctcacgtcaaaacaacactt
gi|5 : taaaatttcataattttcAAAAT-A------ATAC-AT--GT--ACATG--TT--------TT----ATTTAT-CAGAAAGA-AAATTA-T-A--AGCCTAC-TTCTGTCTGGTTTTTTTTT----------------TTAA--------------AGTCCATGATAATTGTTTTCTGTTTGTCTCTG-TAA-T-GT-----GTCATCACTGTTTT--CTTTTTGGATC-------AACA-ATAT--------------AA-CATTAAATTC--TGC-TGC-AA-TCTTGT---GAGATATACTTT-----TCAAGGTT-TTCTCTAGGAATTT---TT-CA-AACTTGA-GTgtagaaaataatacatgtacatgttttatttatcagaaagaaaattataagcctacttctgtctggtttttttttttaaagtccatgataattgttttctgtttgtctctgtaatgtgtcatcactgttttctttttggatcaacaatataacattaaattctgctgcaatcttgtgagatatacttttcaaggttttctctaggaatttttcaaacttgagt
gi|6 : taaaatttcataattttctttataaaaatactgatcatacatatgcacattctaatgtccatgtagCTTATTCCAGTTTGCC-----CTGTAAACAGCCAG-ACAATCA-ATATGT-GAACAAATTAT-AAATTTTATTGCACTTGGATGACAGGGTAA-AATA---AGGTGAAATT-AAT-AAAAAT-GCAAATT-T-C-A---AT--AC-TG--T---------TTCC---TGT----A-AAAGGGGCCCCA---AT-AT------TACA------TTTATCTTTA-----AACCATCC--CTAA-----------CATAAACCAT--TTA----TTTCTCCTT-TTCCCG-TAA-C-GT-----TTCATCGCAGTTTT--CTTTCTGGATC-------AACA-TTATT-TTAA
gi|7 : AAAAAG-----CAAAATACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAATAAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCG-ATATAT-GAACAAGTTTT-AAAACGTATTTTACT----TCACAGAGTAA-AAGA---AGGTGACTTT---T-AGA----------TAT-T-GTGGAC--ACATG--TA--------aaatcctccagatattcagcttttcgtttca
gi|8 : aaaagagaattagtggtgtggaattctgag-----AA--A-----CC-------------CA-AGGTAAT--TAATTATT--CTGTTCATTCTTAATAA-TTAA-----GTCGTC--TGTTT---CTTTCTGAATC-------CACA-TTATTCCTGAGTCTTACCAATCATTTAATTC--TGC-TGC-AA--ATTGT---GAGAT
gi|9 : cCAAATCTGTTTTAAGAGACCACG--TTAGAAAAGTTAT-GA-AAATGGCTACTTATGACATGTGGCCTAATATTCCAGTTTGCT-----TTGCAAACAACAAG-TCAATCA-ATATAT-GAACAAGTTAT-AAACCATATTACACT----TCACAGAGTAA-AACA---AGGTGATTTT-CATAAAAAAT-AC---TTAT-T-AT--AC--GTATGCATA--------TTCTA-ATGT-T-Ctggttgtttttgttattttttggcaaagccttaatgtgtaaaggttgcattctcaagcttaaatttgtatgagtccccaataacaattagattggtcccgcatca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAACAAGTATGAACTTAGCCATCATTGTGTCATCTGTTTTATTTTCA
Unaligned ( gi|20 ): TATCATATTTATAAGTTAACTTTTTCTTACA
Alignments
lowQualScore : 222222 11111 111111 3333333333333333333 111 4444444444444444444 7777777777777777777777777777777 11111 1111111 11111 11 111 1 1 1 444444444
lowQualScore : 777777 99 44 3 3 4 00000 4 4 1 4 4 1 8888 4 777 3 3 2 888888 0 4 4 55 99 0 4444444444444444444 222 8 1 999 6666666666666666666 8888888888888888888888888888888 5 66 66 0 5 5 5 5 22222 0 66 6666666 4 44 5 66 5 5 5 888 3 5555 66666 00 1 6 6 444 0 0 0 6 1 555555555 7
lowQualScore : ...... .. .. . . . ..... . . . . . . .... . ... . . . ...... . . . .. .. . ................... ... . . ... ................... ............................... . .. .. . . . . . ..... . .. ....... . .. . .. . . . ... . .... ..... .. . . . ... . . . . . ......... .
lowQualScore : 555555 00 66 3 3 6 00000 0 0 4 0 0 0 5555 0 000 6 6 6 444444 6 0 0 55 55 8 5555555555555555555 222 4 7 000 5555555555555555555 3333333333333333333333333333333 0 99 88 1 9 0 0 0 55555 2 99 2222222 4 66 0 99 0 0 0 888 2 7777 77777 22 0 7 7 000 0 0 0 7 0 777777777 3
consensus : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAATTT-CAT-AAAAAT-AC---TTAT-C-AT--AC--ACATG--TA--------TTCTA-ATGT-T-CATAAAGGGAAATTA-TTAT-ATCCTAC-TACT------TCTCTCTTTA-----AA--A-----CTAA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
Reference ( family-1876 ) : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAATTT-CAT-AAAAAT-AC---TTAT-C-AT--AC--ACATG--TA--------TTCTA-ATGT-T-CATAAAGGGAAATTA-TTAT-ATCCTAC-TACT------TCTCTCTTTA-----AA--A-----CTAA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
gi|1 : AGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTCATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-TAACTGTCTTACACC----TCACAGAATAA-AACA---AAGTGAATTT-CAT-AAAATT-AA---TTAT-C-AT--AC--ATATG--TAGAAAA---TAATACGTGT-A-CATAAAGGGAAATTA-TTAT----C--C-TACT------TCTCTCTTTA-----AA--AAAAA-C-AA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTTT-GATCCACCAAGCACA-TTA-T-CTGATCCTTACCAA-TCTCTAGTTC--TGC-TGC-AA-TCTTGT----AGA-A----TT-----TC-------TTCATTAAG-GATA---TT-AA-AACTCGA-GTTCATGATCC--A-TC---GGAGGTTATTGTTCTTG
gi|10 : C--TTAGGGAAGTTAT-GA-TAGTGGCCACATAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTATTACACT----TCACAGAGTAA-AAGA---AGGTGATTTT-CAT-AAAAAT-------------AT--GC--AC------A--------TTCTA-ATGT-T-CATGTAGAAAAgttaaagcgtaaatggtcgtagcgttccgccatctcagcctacatttgagtgagtccacacaccaattaggatgtcccgcatactactcgtgtacgctcaacatcaaaacct
gi|11 : AGTCAAACCAGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTCAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAATGAGTTAT-TGACTGTCTTAAACT----TCTCAGAGTAA-AACT---AGGTGAATTT-CAT-AAAATT-AC---TGAT-C-AT--ACATACATG--TA--------Ttaatgcatgtacatgttttattgctgaaaaaggaaattattag
gi|12 : AACAAG------AAA-TACAGTCAAACCTGTTTTAAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTA-----------------TTCCAGTGTGCCTTAAGCTGTAAACAGCCAGACCAATCG-ATATAT-GAACAAGTTAT-AAACTTTAGAACACT----TCACAGAGTAA-AATATTTAGGTGAATTT-CAT-AAAAAT-gtagaaaacaatacgtgt
gi|13 : aaaatcattaccatattgtattcatAGTCAAACCTGTTTTCAGAGGCCACC--TTATGGAAGTTAT-GA-AAGTGGTCACTTAAGACAGGTGGCCTCTTATTCCAGTTTACC-----CTGTAGACAGCCAT-TCAATCC-AAATAT-GGATGAGTTAT-AAACTGTCTTACACT----TCACAGAGTAA-AATA---AAGTGAATTT-CAT-AAAA
gi|14 : AA-----------CA-AGGTAAT--TAATTGTATTCTGTTTCATTCTG-TAA-T-AATTTAAGTCGTCGTTGTTTT--CTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGCAAA-TCTTGT---GAGATg
gi|15 : caAA-----CATA-TACAGTCAAACCTGCATAAAGAGACCGTCCATTGGAG----TACAGATAAGGGGTCACATATGACAGGTGGTTTCTTAT
gi|16 : aaagtgcattggagctg-TTATT--TGAGTCTTGTCAA-CATTTCATTC--TGT-TGC-AA-TCTTGCAAGAAGATATAACTTTTTTATCCAGATGAATCACTATG-ATTT---Tca
gi|17 : AAT-TACAGTCAAACCTGTTTTCAGAGGTCACT--TTAGGGAAGTTAT-AA-AAGTGGCCACATAA
gi|19 : GTCAAACCTGTCTTAAGAGGCTACC--TTGGGGATTTCAT-AA-AA
gi|2 : TCAAAC-TGTTTTCAGAGGCCACC--TTAGG-AAGTTAT-GA-AAGTGCCAACTTA-GACAGGTG-CCTCTCATTCCAGTTTGCC-----CTGT-GAC-GCCTG-TCAATCCCAAATATTGAGCAAGTTATTAAACTGTCTTACACT----TCACAGAGTAAGAACC---AAATGAATTTTCAT-AAAATTTGCA--TTAT-CCAT--ATT-ATATG--TAGAAAATAATACT---TGT-TACATAAAGGAAAATTA-TTAT----CCA-----T------TCTCTCTTTA-----AA--AAAAACCCAAAAACCCCAAACCA-AGGTCAT--TAA------------TCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTTTCTTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-TATCTAATTCCTTGCTTGC-AA-TCTTGT---GAGA-------------------TT-TTCATTAGG-ATTTTTCTT-AATAACTCGACGTC--AGATTC--AT-----GGAGGTTGTTGTTTT
gi|3 : agtAAAAAGATTACCAAC-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTGT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTCTTACACT----TCACAGAGTAC-AACA---AAGTGAATTT-CAT-AAAATT-AC---TTGT-C-AT--AC--ACATG--TT--------TTCT---TGT-T-TA-AAAGGGAAATTATTTAT-ACCCTATGTACT------TCTCTCTT-----------------CTAA-----------CA-AGGTCAT--AAATTGTTTTCTGTTTGTTTCTG-TAA-T-AA-----GTCGTCACTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTCC---GAGATATACCTT-----TCACGGTT-TTCACTAGG-ATTT---TTAAA-AACTCGA-GTCCAGGATTCATATTCAAGGGAGG--GTTTTTTTTggtaaagcctggtaaatgtgtaaagttgccatctcagctatattttttgtagtcccaaaacaattaggattgtcccgccattacttactgtggtacgctaaccgtcaaaa
gi|4 : taaaatcagtttaacataGAAAGTA-TTATTATCCTACGTACT------TCTTTTTTTATTCTTAA--A--------A-----------CA-AGGTCAT--TAAAAGTTTTCGGTTTGTTTCTG-TAAAT-AA-----GTCGTCGCTG-TTT--CTTTTCGGGTC-------CACATTTATT-CTGAGTCTTACCAA-CATTCAATT-----C-TGC-AATTCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACAAGG-ATTtgt
gi|5 : catatgtaTT-TAT-AAAAAT-AC---TGAT-C-AT--AC--ATATGCACA--------TTCTA-ATGT-C-CATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacctactgtgtacggctcacgtcaaaacaacactt
gi|5 : taaaatttcataattttcAAAAT-A------ATAC-AT--GT--ACATG--TT--------TT----ATTTAT-CAGAAAGA-AAATTA-T-A--AGCCTAC-TTCTGTCTGGTTTTTTTTT----------------TTAA--------------AGTCCATGATAATTGTTTTCTGTTTGTCTCTG-TAA-T-GT-----GTCATCACTGTTTT--CTTTTTGGATC-------AACA-ATAT--------------AA-CATTAAATTC--TGC-TGC-AA-TCTTGT---GAGATATACTTT-----TCAAGGTT-TTCTCTAGGAATTT---TT-CA-AACTTGA-GTgtagaaaataatacatgtacatgttttatttatcagaaagaaaattataagcctacttctgtctggtttttttttttaaagtccatgataattgttttctgtttgtctctgtaatgtgtcatcactgttttctttttggatcaacaatataacattaaattctgctgcaatcttgtgagatatacttttcaaggttttctctaggaatttttcaaacttgagt
gi|6 : taaaatttcataattttctttataaaaatactgatcatacatatgcacattctaatgtccatgtagCTTATTCCAGTTTGCC-----CTGTAAACAGCCAG-ACAATCA-ATATGT-GAACAAATTAT-AAATTTTATTGCACTTGGATGACAGGGTAA-AATA---AGGTGAAATT-AAT-AAAAAT-GCAAATT-T-C-A---AT--AC-TG--T---------TTCC---TGT----A-AAAGGGGCCCCA---AT-AT------TACA------TTTATCTTTA-----AACCATCC--CTAA-----------CATAAACCAT--TTA----TTTCTCCTT-TTCCCG-TAA-C-GT-----TTCATCGCAGTTTT--CTTTCTGGATC-------AACA-TTATT-TTAA
gi|7 : AAAAAG-----CAAAATACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAATAAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCG-ATATAT-GAACAAGTTTT-AAAACGTATTTTACT----TCACAGAGTAA-AAGA---AGGTGACTTT---T-AGA----------TAT-T-GTGGAC--ACATG--TA--------aaatcctccagatattcagcttttcgtttca
gi|8 : aaaagagaattagtggtgtggaattctgag-----AA--A-----CC-------------CA-AGGTAAT--TAATTATT--CTGTTCATTCTTAATAA-TTAA-----GTCGTC--TGTTT---CTTTCTGAATC-------CACA-TTATTCCTGAGTCTTACCAATCATTTAATTC--TGC-TGC-AA--ATTGT---GAGAT
gi|9 : cCAAATCTGTTTTAAGAGACCACG--TTAGAAAAGTTAT-GA-AAATGGCTACTTATGACATGTGGCCTAATATTCCAGTTTGCT-----TTGCAAACAACAAG-TCAATCA-ATATAT-GAACAAGTTAT-AAACCATATTACACT----TCACAGAGTAA-AACA---AGGTGATTTT-CATAAAAAAT-AC---TTAT-T-AT--AC--GTATGCATA--------TTCTA-ATGT-T-Ctggttgtttttgttattttttggcaaagccttaatgtgtaaaggttgcattctcaagcttaaatttgtatgagtccccaataacaattagattggtcccgcatca
blockSeqs : ATTACC AA CA A T A TTAAG A C A T T A TGGA G TTT T A A GCAAA A C GG AT TAGAAAATAATACT TA T A TTT AGCCTACTTCTGTCTGG AAAAAAAACCCAAAAACCCCAAAC T GA TT C A A T TTTAA TC . T CC T CT T A T AAG T TAAC TTTTA CA A A A TTC A T C C A ATATTCAAG T
blockSeqs : C A . . . A . . . A . . C . . . . . T TGCA . . . T CACATTCTAA AT T A TT TATCCTACGTACT AAACCATCCCTAA . . TT C . . . . . . . C . . . . . . T TACC . AC G . . . . . . . G AT .
blockSeqs : C T . . . A . . . T . . A . . . . . A AC . . . . CATATTCTAA T T G TT ACCCTATGTACT ATTCTTAAAA . . AA G . . . . . . . C . . . . . . T TACC . AA G . . . . . .
blockSeqs : C . . . T . . . A . . C . . . . . T AC . . . . ATTCTAA T G G T ATTACA CTAA . . TT G . . . . . . . C . . . . . . T TACT . AA G . . .
blockSeqs : . . . A . . . A . . C . . . . . T AC . . . . TTTTCT C . G . CCAT TTAA . . TT G . . . . . . . C . . . . . . T . . . . . .
blockSeqs : . . . A . . . A . . C . . . . . A AC . . . . TTTTA T . . . . . A . . . . . . . T . . . . . . T
blockSeqs : . . . A . . . T . . A . . . . . A A . . . . TTTCC . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . T . . . T . . A . . . . . A . . . . . . .
blockSeqs : . . . . . . . T . . A . . . . . A . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . .
blockSeqCons : TATTCTAA*********** ATCCTACGTACT******* ACCCCTAA*********************** ******* TACC AA
originalCons : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAATTT-CAT-AAAAAT-AC---TTAT-C-AT--AC--ACATG--TA--------TTCTA-ATGT-T-CATAAAGGGAAATTA-TTAT-ATCCTAC-TACT------TCTCTCTTTA-----AA--A-----CTAA-----------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
finalCons : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAATTT-CAT-AAAAAT-AC---TTAT-C-AT--AC--ACATGTATTCTAA-----------TGT-T-CATAAAGGGAAATTA-TTATATCCTACGTACT-------TCTCTCTTTACCCCTAA-----------------------CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAACAAGTATGAACTTAGCCATCATTGTGTCATCTGTTTTATTTTCA
Unaligned ( gi|20 ): TATCATATTTATAAGTTAACTTTTTCTTACA
Alignments
lowQualScore : 222222 11111 111111 3333333333333333333 111 1111 5555555555555 99999999999999999999999999 11 11111 1111111 11111 11 111 1 1 1 444444444
lowQualScore : 777777 99 44 3 3 4 00000 4 4 1 4 4 1 8888 4 777 3 3 2 888888 0 4 4 55 99 0 4444444444444444444 222 8 1 2222 3 6 1111111111111 77777777777777777777777777 11 5 66 66 0 5 5 5 5 22222 0 66 6666666 4 44 5 66 5 5 5 888 3 5555 66666 00 1 6 6 444 0 0 0 6 1 555555555 7
lowQualScore : ...... .. .. . . . ..... . . . . . . .... . ... . . . ...... . . . .. .. . ................... ... . . .... . . ............. .......................... .. . .. .. . . . . . ..... . .. ....... . .. . .. . . . ... . .... ..... .. . . . ... . . . . . ......... .
lowQualScore : 555555 00 66 3 3 6 00000 0 0 4 0 0 0 5555 0 000 6 6 6 444444 6 0 0 55 55 8 5555555555555555555 222 4 7 1111 2 7 2222222222222 22222222222222222222222222 99 0 99 88 1 9 0 0 0 55555 2 99 2222222 4 66 0 99 0 0 0 888 2 7777 77777 22 0 7 7 000 0 0 0 7 0 777777777 3
consensus : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAATTT-CAT-AAAAAT-AC---TTAT-C-AT--AC--ACATG--TA--------TTCTA-ATGT-T-CATAAAGGGA----AATTA-TTAT-ATCCTAC----TTCTCTCT-----TT---------------ATCCCTAA--CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
Reference ( family-1876 ) : NNNNNNNNNNNNNNNNNNAAAAAG-----CAAA-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTNTTACACT----TCACAGAGTAA-AACA---AGGTGAATTT-CAT-AAAAAT-AC---TTAT-C-AT--AC--ACATG--TA--------TTCTA-ATGT-T-CATAAAGGGA----AATTA-TTAT-ATCCTACGTACTTCTCTCT-----TT---------------ACCCCTAA--CA-AGGTCAT--TAATTGTTTTCTGTTTNTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACTAGG-ATTT---TT-AA-AACTCGA-GTCCANGATTC--ATTC---GGAGGTTGTTGTTTTTG
gi|1 : AGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTCATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-TAACTGTCTTACACC----TCACAGAATAA-AACA---AAGTGAATTT-CAT-AAAATT-AA---TTAT-C-AT--AC--ATATG--TAGAAAA---TAATACGTGT-A-CATAAAGGGA----AATTA-TTAT---CCTAC----TTCTCTCT-----TTAAAAAAA--------AC----AA--CA-AGGTCAT--TAATTGTTTTCTGTTTCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTT--CTTTTT-GATCCACCAAGCACA-TTA-T-CTGATCCTTACCAA-TCTCTAGTTC--TGC-TGC-AA-TCTTGT----AGA-A----TT-----TC-------TTCATTAAG-GATA---TT-AA-AACTCGA-GTTCATGATCC--A-TC---GGAGGTTATTGTTCTTG
gi|10 : C--TTAGGGAAGTTAT-GA-TAGTGGCCACATAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACGGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTATTACACT----TCACAGAGTAA-AAGA---AGGTGATTTT-CAT-AAAAAT-------------AT--GC--AC------A--------TTCTA-ATGT-T-CATGTAGAAA----Agttaaagcgtaaatggtcgtagcgttccgccatctcagcctacatttgagtgagtccacacaccaattaggatgtcccgcatactactcgtgtacgctcaacatcaaaacct
gi|11 : AGTCAAACCAGTTTTCAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTCAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAATGAGTTAT-TGACTGTCTTAAACT----TCTCAGAGTAA-AACT---AGGTGAATTT-CAT-AAAATT-AC---TGAT-C-AT--ACATACATG--TA--------Ttaatgcatgtacatgttttattgctgaaaaaggaaattattag
gi|12 : AACAAG------AAA-TACAGTCAAACCTGTTTTAAGAGGCCACC--TTAGGGAAGTTAT-GA-AAGTGGCCACTTA-----------------TTCCAGTGTGCCTTAAGCTGTAAACAGCCAGACCAATCG-ATATAT-GAACAAGTTAT-AAACTTTAGAACACT----TCACAGAGTAA-AATATTTAGGTGAATTT-CAT-AAAAAT-gtagaaaacaatacgtgt
gi|13 : aaaatcattaccatattgtattcatAGTCAAACCTGTTTTCAGAGGCCACC--TTATGGAAGTTAT-GA-AAGTGGTCACTTAAGACAGGTGGCCTCTTATTCCAGTTTACC-----CTGTAGACAGCCAT-TCAATCC-AAATAT-GGATGAGTTAT-AAACTGTCTTACACT----TCACAGAGTAA-AATA---AAGTGAATTT-CAT-AAAA
gi|14 : AA--CA-AGGTAAT--TAATTGTATTCTGTTTCATTCTG-TAA-T-AATTTAAGTCGTCGTTGTTTT--CTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGCAAA-TCTTGT---GAGATg
gi|15 : caAA-----CATA-TACAGTCAAACCTGCATAAAGAGACCGTCCATTGGAG----TACAGATAAGGGGTCACATATGACAGGTGGTTTCTTAT
gi|16 : aaagtgcattggagctg-TTATT--TGAGTCTTGTCAA-CATTTCATTC--TGT-TGC-AA-TCTTGCAAGAAGATATAACTTTTTTATCCAGATGAATCACTATG-ATTT---Tca
gi|17 : AAT-TACAGTCAAACCTGTTTTCAGAGGTCACT--TTAGGGAAGTTAT-AA-AAGTGGCCACATAA
gi|19 : GTCAAACCTGTCTTAAGAGGCTACC--TTGGGGATTTCAT-AA-AA
gi|2 : TCAAAC-TGTTTTCAGAGGCCACC--TTAGG-AAGTTAT-GA-AAGTGCCAACTTA-GACAGGTG-CCTCTCATTCCAGTTTGCC-----CTGT-GAC-GCCTG-TCAATCCCAAATATTGAGCAAGTTATTAAACTGTCTTACACT----TCACAGAGTAAGAACC---AAATGAATTTTCAT-AAAATTTGCA--TTAT-CCAT--ATT-ATATG--TAGAAAATAATACT---TGT-TACATAAAGGAA----AATTA-TTAT----CCA-----TTCTCTCT-----TTAAAAAAAACCCAAAAACCCCAAAC-CA-AGGTCAT--TAA------------TCTTTCTG-TAA-T-AA-----GTCGTCGCTGTTTTTCTTTTCTGAATC-------CACA-TTATT-CTGAGTCTTACCAA-TATCTAATTCCTTGCTTGC-AA-TCTTGT---GAGA-------------------TT-TTCATTAGG-ATTTTTCTT-AATAACTCGACGTC--AGATTC--AT-----GGAGGTTGTTGTTTT
gi|3 : agtAAAAAGATTACCAAC-TACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAGTTGT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCC-AAATAT-GAACGAGTTAT-AAACTGTCTTACACT----TCACAGAGTAC-AACA---AAGTGAATTT-CAT-AAAATT-AC---TTGT-C-AT--AC--ACATG--TT--------TTCT---TGT-T-TA-AAAGGGA----AATTATTTAT-ACCCTATGTACTTCTCTCT-----T--------------------CTAA--CA-AGGTCAT--AAATTGTTTTCTGTTTGTTTCTG-TAA-T-AA-----GTCGTCACTGTTTT--CTTTCTGGATC-------CACA-TTATT-CTGAGTCTTACCAA-CATTTAATTC--TGC-TGC-AA-TCTTCC---GAGATATACCTT-----TCACGGTT-TTCACTAGG-ATTT---TTAAA-AACTCGA-GTCCAGGATTCATATTCAAGGGAGG--GTTTTTTTTggtaaagcctggtaaatgtgtaaagttgccatctcagctatattttttgtagtcccaaaacaattaggattgtcccgccattacttactgtggtacgctaaccgtcaaaa
gi|4 : taaaatcagtttaacataGA----AAGTA-TTATTATCCTACGTACTTCTTTTT-----TT---------------ATTCTTAAAACA-AGGTCAT--TAAAAGTTTTCGGTTTGTTTCTG-TAAAT-AA-----GTCGTCGCTG-TTT--CTTTTCGGGTC-------CACATTTATT-CTGAGTCTTACCAA-CATTCAATT-----C-TGC-AATTCTTGC---GAGATATACCTT-----TCAAGGTT-TTCACAAGG-ATTtgt
gi|5 : catatgtaTT-TAT-AAAAAT-AC---TGAT-C-AT--AC--ATATGCACA--------TTCTA-ATGT-C-CATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacctactgtgtacggctcacgtcaaaacaacactt
gi|5 : taaaatttcataattttcAAAAT-A------ATAC-AT--GT--ACATG--TT--------TT----ATTTAT-CAGAAAGA-A----AATTA-T-A--AGCCTAC----TTCTGTCTGGTTTTT---------------TTTTTTAA-----AGTCCATGATAATTGTTTTCTGTTTGTCTCTG-TAA-T-GT-----GTCATCACTGTTTT--CTTTTTGGATC-------AACA-ATAT--------------AA-CATTAAATTC--TGC-TGC-AA-TCTTGT---GAGATATACTTT-----TCAAGGTT-TTCTCTAGGAATTT---TT-CA-AACTTGA-GTgtagaaaataatacatgtacatgttttatttatcagaaagaaaattataagcctacttctgtctggtttttttttttaaagtccatgataattgttttctgtttgtctctgtaatgtgtcatcactgttttctttttggatcaacaatataacattaaattctgctgcaatcttgtgagatatacttttcaaggttttctctaggaatttttcaaacttgagt
gi|6 : taaaatttcataattttctttataaaaatactgatcatacatatgcacattctaatgtccatgtagCTTATTCCAGTTTGCC-----CTGTAAACAGCCAG-ACAATCA-ATATGT-GAACAAATTAT-AAATTTTATTGCACTTGGATGACAGGGTAA-AATA---AGGTGAAATT-AAT-AAAAAT-GCAAATT-T-C-A---AT--AC-TG--T---------TTCC---TGT----A-AAAGGGGCCCCAA-TA-TTAC-AT---------TTATCTTTAAA--CC---------------ATCCCTAA--CATAAACCAT--TTA----TTTCTCCTT-TTCCCG-TAA-C-GT-----TTCATCGCAGTTTT--CTTTCTGGATC-------AACA-TTATT-TTAA
gi|7 : AAAAAG-----CAAAATACAGTCAAACCTGTTTTCAGAGGCCACC--TTAGGGAAATAAT-GA-AAGTGGCCACTTAAGACAGGTGGCCTCTTATTCCAGTTTGCC-----CTGTAGACAGCCAG-TCAATCG-ATATAT-GAACAAGTTTT-AAAACGTATTTTACT----TCACAGAGTAA-AAGA---AGGTGACTTT---T-AGA----------TAT-T-GTGGAC--ACATG--TA--------aaatcctccagatattcagcttttcgtttca
gi|8 : aaaagagaattagtggtgtggaattctgag--CA-AGGTAAT--TAATTATT--CTGTTCATTCTTAATAA-TTAA-----GTCGTC--TGTTT---CTTTCTGAATC-------CACA-TTATTCCTGAGTCTTACCAATCATTTAATTC--TGC-TGC-AA--ATTGT---GAGAT
gi|9 : caaaccCAAATCTGTTTTAAGAGACCACG--TTAGAAAAGTTAT-GA-AAATGGCTACTTATGACATGTGGCCTAATATTCCAGTTTGCT-----TTGCAAACAACAAG-TCAATCA-ATATAT-GAACAAGTTAT-AAACCATATTACACT----TCACAGAGTAA-AACA---AGGTGATTTT-CATAAAAAAT-AC---TTAT-T-AT--AC--GTATGCATA--------TTCTA-ATGT-T-Ctggttgtttttgttattttttggcaaagccttaatgtgtaaaggttgcattctcaagcttaaatttgtatgagtccccaataacaattagattggtcccgcatca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AAACAAGTATGAACTTAGCCATCATTGTGTCATCTGTTTTATTTTCA
Unaligned ( gi|20 ): TATCATATTTATAAGTTAACTTTTTCTTACA