lowQualScore : 333333333333333333333333333333333333333333333333333 4444444444444444444 1 11111
lowQualScore : 4 999999999999999999999999999999999999999999999999999 888888 3 5555555555555555555 7777 7777 2 9 3 3 3 444 77777 555 4 4 4 1 1
lowQualScore : . ................................................... ...... . ................... .... .... . . . . . ... ..... ... . . . . .
lowQualScore : 0 888888888888888888888888888888888888888888888888888 000000 6 0000000000000000000 1111 1111 9 2 3 3 3 444 99999 222 0 0 0 7 4
consensus : ATGCNCAGTGAATNTGAATGAGTAT-TCCGCGAGCATGACGAAGTAAACGGTGCGGAAAACTGATTTGCCGGACTGA----C-GGA-CGGACGG----A------------CGGACA----GA----GTGCAAACC-TA-AAG-T-CCC-C---TC-GACTTC-G-TC-GGTAGGGGACTATA
Reference ( gi|2 ) : ATGCAC-GT--ATG-AAATAAATGTTTCTGAAAACATGACGAAATAAAAAGTGCGGTAAACTGATTTGCTGGACTGA----C-AGA-CAGACAC----A------------CGGACA----GA----GTGGAAATC-TA-AAG-T-CTC-C---TC-GGCTTT-G-TC-GGTAGGAGATTATA
gi|4 : ATACTC-GTGAATGTGAATAAATAT--CTGCAAGAA-GAC--AGGAAAAAGAGCGTAAAACTGATTTGCCGAACTGA----C-AGA-CAGAC-------------------------------------------C-TA-TAGTT-CCC-T---TC-GACTTC-G-TT-GTTAGGGTATAATA
gi|1 : aaccTGTACAGT--ATC-GAATGA--GTATCTGCATGCCTGAC--AATGCACGGTGAGGAAAACTGATTTGTTAAACTGATGCAC-AGG-CGGACTG----A------------AGGACA----GA----GTGCAAACC-AG-AAG-T-TCC-C---TCTGGCTAT-G-TT-AGTAAGGAACT
gi|3 : AATGAGTATCTGCAAGAACA-GAGGAAGCAA---GTGTGAAGAAGTGATTTTCTGGATTGA----T-ATA-CAGACGG----ATGGATGGATGTCCGGGCA----GATGGAGTGCAAATC-TA-TAG-T-ATC-CT--TC-GACTTC-A-TC-GGacagtattaaatgacaaatagtgaacagtctgaa
gi|15 : CATGACAAAATAA---------TAAACTGATTTGCCGGACTGA----C-AAA-CAGACc
gi|5 : AAACAGTGTGGGAACCTGATTTGCTGGATTGA----T-GGA-TGGACGT----C------------CGGACAGACGGA----ATGCAAACC-TA-TAT-T-CCCTT---TC-GACTT
gi|6 : aaaaagaggaCCGGACTGA----C-GGA-CAGACAG----A------------AGGACA----GA----GTGCAAA-C-TA-AAG-TACCC-T---TC-GACTTC-G-GCTGGTAACGGACTgggga
gi|13 : aCTGGACTAA----C-AG-------------A------------CGGACA----G-----GTGCAAACC-TA-AAG-T-CCC----------CTTC-G-TT-GGTAGaaaag
gi|7 : GGAC-AA----CGAGA-CGGACAG----A------------CAGACA----GA----GT-GCAACC-TA-AAG----CC-C---TC-GACTTC-G-TC-GGTtggaaaataaag
gi|11 : GACTGA----T-GGA-TGGACATCTAGA------------CAGATG----GA----ATGCAAACC-TA-CA--T-CTC-CCT-TC-GACTTT-G-TC-TGTTGGGGtagcaacctataaaag
gi|16 : ACTG--------GA-CATACGG----A------------CGGACA----GA----GTACAAACC-TA-AAG-T-CCC-T---T
gi|9 : tGA----C-AGAACAGAAAA----AGGGAA-------CGGACA----GA----GTGCAAAAC-CAGAAG-T-CCC-CCATTC-GACTTTCG-TC-GGTAGGAG
gi|8 : gGACAG----A------------CAGACA----AA----GTGCAAACC-TT-AAG-T-GCC-T---TC-GGCTTC-A-TC-AGTGGGAGACT
gi|14 : tgattttccag----A------------CGGACA----GA----GTGCAAACCTTA-AAG-T-CCC-C---TT---CATT-GCTC-GGTAGGGGATAATAataaa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): CAGACGGATAGATGGACGTCGGGAAATCAAACGCAATGTAAAGGTCCCTTTCCGACTTCTCCGGCGGGTCA
Unaligned ( gi|12 ): AAACTAATTTGCCGGACTGGCGGGATAGATTTGGAGTGCAAACCTAAATTCCCTTTCGAATGACT
Unaligned ( gi|17 ): CGGACGGACGGAGTGCAAACTAAGTCCCCTTCGACTTCATCGC
Unaligned ( gi|18 ): TGCATTTAATTACTTCTTTGAACAGTGGCAGTCAATCTGAAC
Alignments
lowQualScore : 22 111 2 11111 222 11111111 11111
lowQualScore : 1 55 6 555 33 3 7 6 6 22222 3 333 000 3 22 44444444 3 1 6666 5555 555555555 33 5555 2 2 5 5 44444 2 3 3
lowQualScore : . .. . ... .. . . . . ..... . ... ... . .. ........ . . .... .... ......... .. .... . . . . ..... . . .
lowQualScore : 0 77 7 777 55 2 8 0 0 44444 7 000 333 7 88 55555555 3 2 1111 7777 777777777 77 7777 7 7 3 3 55555 9 1 3
consensus : ATGCACG-GTGAATNTGAATGAGTAT-CTGCAAG--CATGACGAAGNAAA-AGTGCGGAAAACTGATTTGCCGGACTGA--------CG-GACGGA----CG----GA----C----GGA--CGGA----GTGCAAACC-TA-AAG-T-CCC-C---TC-GAC-TTCGTC-GGTAGGGGACTATA
Reference ( family-1793 ) : ATGCNCA-GTGAATNTGAATGAGTATTCCGCGAG--CATGACGAAGTAAACGGTGCGGAAAACTGATTTGCCGGACTGA--------CG-GACGGA----CG----GA----C----GGA--CAGA----GTGCAAACC-TA-AAG-T-CCC-C---TC-GAC-TTCGTC-GGTAGGGGACTATA
gi|1 : TGTACA-GT--ATC-GAATGAGTAT-CTGCATG--CCTGACAA--TGCACGGTGAGGAAAACTGATTTGTTAAACTGA--------TG-CACAGG----CG----GA----CTGAAGGA--CAGA----GTGCAAACC-AG-AAG-T-TCC-C---TCTGGC-TATGTT-AGTAAGGAACTA
gi|11 : GACTGA--------TG-GATGGA----CATCTAGA----C----AGA--TGGA----ATGCAAACC-TA-CATCT-CCC-T---TC-GAC-TTTGTC-TGTTGGGGacagtattaaatgacaaatagtgaacagtctgaa
gi|12 : AAACTAATTTGCCGGACTGG--------CG------------G----GA----T----AGATTTGGA----GTGCAAACC-TA-AAT-T-CCCTT---TC-GA
gi|13 : G-GACTAA----CA----GA----C----GGA--CAG-----GTGCAAACC-TA-AAG-T-CCC----------C-TTCGTT-GGTAGTGGAatgact
gi|14 : ctG----GA----C----GGA--CAGA----GTGCAAACCTTA-AAG-T-CCC-C---TT-CAT-TGC-TC-GGTAGGGGATAATAaaataaag
gi|15 : --CATGACAAAATAA----T-----AAACTGATTTGCCGGACTGA--------CA-AACAGA----Ctaa
gi|16 : G-GACATA----CG----GA----C----GGA--CAGA----GTACAAACC-TA-AAG-T-CCC-T---T
gi|17 : tact----CG----GA----C----GGA--CGGA----GTGCAAACT----AAG-T-CCC-CT--TC-GAC-TTCATC-
gi|2 : ATGCACGTATGAA-ATAAATG--T-TTCTGAAAA--CATGACGAAATAAAAAGTGCGGTAAACTGATTTGCTGGACTGA--------CA-GACAGA----CA----CA----C----GGA--CAGA----GTGGAAATC-TA-AAG-T-CTC-C---TC-GGC-TTTGTC-GGTAGGAGATTATAc
gi|3 : AATGAGTAT-CTGCAAGAACA-GAGGAAGCAA---GTGTGAAGAAGTGATTTTCTGGATTGATATACAGACG-GATGGA----TG----GATGTCC----GGG--CAGATGGAGTGCAAATC-TA-TAG-TATCC-T---TC-GAC-TTCATC-GG
gi|4 : ATACTC--GTGAATGTGAATAAATAT-CTGCAAG--AA-GAC--AGGAAAAAGAGCGTAAAACTGATTTGCCGAACTGA--------CA-GACAG-----------------------------------------ACC-TA-TAGTT-CCC-T---TC-GAC-TTCGTT-GTTAGGG---TATAc
gi|5 : aaccGAGGAAAACAGTGTGGGAACCTGATTTGCTGGATTGA--------TG-GATGGACGTCCG----GA----C----AGA--CGGA----ATGCAAACC-TA-TAT-T-CCCTT---TC-GAC-TTata
gi|6 : aaaaaCCGGACTGA--------CG-GACAGA----CA----GA----A----GGA--CAGA----GTGCAAA-C-TA-AAG-TACCC-T---TC-GAC-TTCGGCTGGTAACGGACTAgggga
gi|7 : aGGAC-AA--------CGAGACGGA----CA----GA----C----AGA--CAGA----GTGC-AACC-TA-AAG----CC-C---TC-GAC-TTCGTC-GGTaaaag
gi|8 : GGA----CA----GA----C----AGA--CAAA----GTGCAAACC-TT-AAG-T-GCC-T---TC-GGC-TTCATC-AGTGGGAGACTAtagcaacctataaaag
gi|9 : tgattttccaG----AA----C----GGA--CAGA----GTGCAAAAC-CAGAAG-T-CCC-CCATTC-GACTTTCGTC-GGTAGGAGataaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CAGACGGATAGATGGACGTCGGGAAATCAAACGCAATGTAAAGGTCCCTTTCCGACTTCTCCGGCGGGTCA
Unaligned ( gi|18 ): TGCATTTAATTACTTCTTTGAACAGTGGCAGTCAATCTGAAC
Alignments
lowQualScore : 1 111 11111 3333 11111111 11111111 11111
lowQualScore : 3 6 555 33 22222 3 0 1 0000 3 22 33333333 3 1 55555555 5555 5555 33 0 33 2 7777 2 2 5 5 44444 33 2 2 3
lowQualScore : . . ... .. ..... . . . .... . .. ........ . . ........ .... .... .. . .. . .... . . . . ..... .. . . .
lowQualScore : 3 7 777 55 44444 7 3 0 3333 7 88 22222222 1 6 33333333 3333 3333 44 6 44 5 8888 5 5 0 0 00000 44 7 9 1
consensus : ATGCACG-GTGAATNTGAATGAGTATCTGCAAG--CATGACGAAGNAAA-A-GTGCGGAAAACTGATTTGCCGGACTGA--------CG-GACGGA--------CG----GAC----GGA--CGG--AGTGCAAAC-C----TA-AA-G-T-CCC-T---T--C-GAC-TTCGTC-GGTAGGGGACTATA
Reference ( family-1793 ) : ATGCACG-GTGAATNTGAATGAGTATCTGCAAG--CATGACGAAGNAAA-A-GTGCGGAAAACTGATTTGCCGGACTGA--------CG-GACGGA--------CG----GAC----GGA--CGG--AGTGCAAAC-C----TA-AA-G-T-CCC-C---T--C-GAC-TTCGTC-GGTAGGGGACTATA
gi|1 : TGTACA-GT--ATC-GAATGAGTATCTGCATG--CCTGACAATGCACG---GTGAGGAAAACTGATTTGTTAAACTGA--------TG-CACAGG--------CG----GACTGAAGGA--CAG--AGTGCAAAC-C----AG-AA-G-T-TCC-C---T--CTGGC-TATGTT-AGTAAGGAACTA
gi|10 : GA--------CG-GATAGA--------TG----GAC----GT---CGGGAAAT-CAAACGCAATGTA-AA-GGT-CCC-T---TTCC-GAC-TTCTCC-GGCGGGacagtattaaatgacaaatagtgaacagtctgaa
gi|11 : caGACTGA--------TG-GATGGA--------CATCTAGAC----AGA--TGG--AATGCAAAC-C----TA-CATC-T-CCC-T---T--C-GAC-TTTGTC-TGTTGGGGtca
gi|12 : AAACTAATTTGCCGGACTGG--------CG----------------G----GAT----AGATTTGG--AGTGCAAAC-C----TA-AA-T-T-CCCTT---T--C-GA
gi|13 : G-GACTAA--------CA----GAC----GGA--CAG---GTGCAAAC-C----TA-AA-G-T-CCC------------C-TTCGTT-GGTAGTGGAatgact
gi|14 : ctG----GAC----GGA--CAG--AGTGCAAAC-CT---TA-AA-G-T-CCC-C---T--T-CAT-TGC-TC-GGTAGGGGATAATAaaataaag
gi|15 : --CATGACAAAATAA-----T-----AAACTGATTTGCCGGACTGA--------CA-AACAGA--------Ctaa
gi|16 : G-GACATA--------CG----GAC----GGA--CAG--AGTACAAAC-C----TA-AA-G-T-CCC-T---T--
gi|17 : tact--------CG----GAC----GGA--CGG--AGTGCAAAC-T-------AA-G-T-CCC-CT--T--C-GAC-TTCATC-
gi|2 : ATGCACGTATGAA-ATAAATG--TTTCTGAAAA--CATGACGAAATAAA-AAGTGCGGTAAACTGATTTGCTGGACTGA--------CA-GACAGA--------CA----CAC----GGA--CAG--AGTGGAAAT-C----TA-AA-G-T-CTC-C---T--C-GGC-TTTGTC-GGTAGGAGATTATAc
gi|3 : AATGAGTATCTGCAAGAACA-GAGGAAGCAA----GTGTGAAGAAGTGATTTTCTGGATTGATATACAGACG-GATGGATGGATGTCCG----GGC----AGA--TGG--AGTGCAAAT-C----TA-TA-G-TATCC-T---T--C-GAC-TTCATC-GG
gi|4 : -GTGAATGTGAATAAATATCTGCAAG--AA-GAC-AGGAAAA-A-GAGCGTAAAACTGATTTGCCGAACTGA--------CA-GACAG---------------------------------------AC-C----TA-TA-GTT-CCC-T---T--C-GAC-TTCGTT-GTTAGGG---TATAc
gi|5 : aaccatactcGAGGAAAACA-GTGTGGGAACCTGATTTGCTGGATTGA--------TG-GATGGACGTC----CG----GAC----AGA--CGG--AATGCAAAC-C----TA-TA-T-T-CCCTT---T--C-GAC-TTata
gi|6 : aaaaaCCGGACTGA--------CG-GACAGA--------CA----GAA----GGA--CAG--AGTGCAAA--C----TA-AA-G-TACCC-T---T--C-GAC-TTCGGCTGGTAACGGACTAgggga
gi|7 : aGGAC-AA--------CGAGACGGA--------CA----GAC----AGA--CAG--AGTGC-AAC-C----TA-AA-G----CC-C---T--C-GAC-TTCGTC-GGTaaaag
gi|8 : GGA--------CA----GAC----AGA--CAA--AGTGCAAAC-C----TT-AA-G-T-GCC-T---T--C-GGC-TTCATC-AGTGGGAGACTAtagcaacctataaaag
gi|9 : tgattttccaG----AAC----GGA--CAG--AGTGCAAAA-C----CAGAA-G-T-CCC-CCATT--C-GACTTTCGTC-GGTAGGAGataaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGCATTTAATTACTTCTTTGAACAGTGGCAGTCAATCTGAAC
Alignments
lowQualScore : 1 111 11111 3333 11111111 11111111 111
lowQualScore : 3 6 555 33 22222 3 0 1 0000 3 22 33333333 3 1 55555555 5555 5555 444 33 2 7777 2 111 999 33 2 3
lowQualScore : . . ... .. ..... . . . .... . .. ........ . . ........ .... .... ... .. . .... . ... ... .. . .
lowQualScore : 3 7 777 55 44444 7 3 0 3333 7 88 22222222 1 6 33333333 3333 3333 000 44 5 8888 5 666 444 44 9 1
consensus : ATGCACG-GTGAATNTGAATGAGTATCTGCAAG--CATGACGAAGNAAA-A-GTGCGGAAAACTGATTTGCCGGACTGA--------CG-GACGGA--------CG----GAC----GGAC--GG--AGTGCAAAC-C----TA-AAG-T-CCC---TT--CGAC-TTCGTC-GGTAGGGGACTATA
Reference ( family-1793 ) : ATGCACG-GTGAATNTGAATGAGTATCTGCAAG--CATGACGAAGNAAA-A-GTGCGGAAAACTGATTTGCCGGACTGA--------CG-GACGGA--------CG----GAC----GGAC--GG--AGTGCAAAC-C----TA-AAG-T-CCC---TT--CGAC-TTCGTC-GGTAGGGGACTATA
gi|1 : TGTACA-GT--ATC-GAATGAGTATCTGCATG--CCTGACAATGCACG---GTGAGGAAAACTGATTTGTTAAACTGA--------TG-CACAGG--------CG----GACTGAAGGAC--AG--AGTGCAAAC-C----AG-AAGTT-CCC---TC--TGGC-TATGTT-AGTAAGGAACTA
gi|10 : GA--------CG-GATAGA--------TG----GAC----GT-C--GGGAAAT-CAAACGCAATGTA-AAGGT-CCC---TTTCCGAC-TTCTCC-GGCGGGacagtattaaatgacaaatagtgaacagtctgaa
gi|11 : caGACTGA--------TG-GATGGA--------CATCTAGAC----AGAT--GG--AATGCAAAC-C----TA-CATCT-CCC---TT--CGAC-TTTGTC-TGTTGGGGtca
gi|12 : AAACTAATTTGCCGGACTGG--------CG-G-------------------GAT----AGATTTGG--AGTGCAAAC-C----TA-AAT-T-CCCT--TT--CGA
gi|13 : G-GACTAA--------CA----GAC----GGAC--AG---GTGCAAAC-C----TA-AAG-T-CCC----------C-TTCGTT-GGTAGTGGAatgact
gi|14 : ctG----GAC----GGAC--AG--AGTGCAAAC-CT---TA-AAG-T-CCC---CT--TCAT-TGC-TC-GGTAGGGGATAATAaaataaag
gi|15 : --CATGACAAAATAA-----T-----AAACTGATTTGCCGGACTGA--------CA-AACAGA--------Ctaa
gi|16 : G-GACATA--------CG----GAC----GGAC--AG--AGTACAAAC-C----TA-AAG-T-CCC---TT--
gi|17 : tact--------CG----GAC----GGAC--GG--AGTGCAAAC-T-------AAG-TCCCC---TT--CGAC-TTCATC-
gi|2 : ATGCACGTATGAA-ATAAATG--TTTCTGAAAA--CATGACGAAATAAA-AAGTGCGGTAAACTGATTTGCTGGACTGA--------CA-GACAGA--------CA----CAC----GGAC--AG--AGTGGAAAT-C----TA-AAG-T-CTC---CT--CGGC-TTTGTC-GGTAGGAGATTATAc
gi|3 : AATGAGTATCTGCAAGAACA-GAGGAAGCAA----GTGTGAAGAAGTGATTTTCTGGATTGATATACAGACG-GATGGATGGATGTCCG----GGC----AGAT--GG--AGTGCAAAT-C----TA-TAG-TATCC---TT--CGAC-TTCATC-GG
gi|4 : -GTGAATGTGAATAAATATCTGCAAG--AA-GAC-AGGAAAA-A-GAGCGTAAAACTGATTTGCCGAACTGA--------CA-GACAG---------------------------------------AC-C----TA-TAGTT-CCC---TT--CGAC-TTCGTT-GTTAGGG---TATAc
gi|5 : aaccatactcGAGGAAAACA-GTGTGGGAACCTGATTTGCTGGATTGA--------TG-GATGGACGTC----CG----GAC----AGAC--GG--AATGCAAAC-C----TA-TAT-T-CCCT--TT--CGAC-TTata
gi|6 : aaaaaCCGGACTGA--------CG-GACAGA--------CA----GAA----GGAC--AG--AGTGCAAA--C----TA-AAG-TACCC---TT--CGAC-TTCGGCTGGTAACGGACTAgggga
gi|7 : aGGAC-AA--------CGAGACGGA--------CA----GAC----AGAC--AG--AGTGC-AAC-C----TA-AAG----CC---CT--CGAC-TTCGTC-GGTaaaag
gi|8 : GGA--------CA----GAC----AGAC--AA--AGTGCAAAC-C----TT-AAG-T-GCC---TT--CGGC-TTCATC-AGTGGGAGACTAtagcaacctataaaag
gi|9 : tgattttccaG----AAC----GGAC--AG--AGTGCAAAA-C----CAGAAG-T-CCCCCATT--CGACTTTCGTC-GGTAGGAGataaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGCATTTAATTACTTCTTTGAACAGTGGCAGTCAATCTGAAC
Alignments
lowQualScore : 1 111 11111 3333 11111111 11111111 111
lowQualScore : 3 6 555 33 22222 3 0 1 0000 3 22 33333333 3 1 55555555 5555 5555 444 33 2 7777 2 111 999 33 2 3
lowQualScore : . . ... .. ..... . . . .... . .. ........ . . ........ .... .... ... .. . .... . ... ... .. . .
lowQualScore : 3 7 777 55 44444 7 3 0 3333 7 88 22222222 1 6 33333333 3333 3333 000 44 5 8888 5 666 444 44 9 1
consensus : ATGCACG-GTGAATNTGAATGAGTATCTGCAAG--CATGACGAAGNAAA-A-GTGCGGAAAACTGATTTGCCGGACTGA--------CG-GACGGA--------CG----GAC----GGAC--GG--AGTGCAAAC-C----TA-AAG-T-CCC---TT--CGAC-TTCGTC-GGTAGGGGACTATA
Reference ( family-1793 ) : ATGCACG-GTGAATNTGAATGAGTATCTGCAAG--CATGACGAAGNAAA-A-GTGCGGAAAACTGATTTGCCGGACTGA--------CG-GACGGA--------CG----GAC----GGAC--GG--AGTGCAAAC-C----TA-AAG-T-CCC---TT--CGAC-TTCGTC-GGTAGGGGACTATA
gi|1 : TGTACA-GT--ATC-GAATGAGTATCTGCATG--CCTGACAATGCACG---GTGAGGAAAACTGATTTGTTAAACTGA--------TG-CACAGG--------CG----GACTGAAGGAC--AG--AGTGCAAAC-C----AG-AAGTT-CCC---TC--TGGC-TATGTT-AGTAAGGAACTA
gi|10 : GA--------CG-GATAGA--------TG----GAC----GT-C--GGGAAAT-CAAACGCAATGTA-AAGGT-CCC---TTTCCGAC-TTCTCC-GGCGGGacagtattaaatgacaaatagtgaacagtctgaa
gi|11 : caGACTGA--------TG-GATGGA--------CATCTAGAC----AGAT--GG--AATGCAAAC-C----TA-CATCT-CCC---TT--CGAC-TTTGTC-TGTTGGGGtca
gi|12 : AAACTAATTTGCCGGACTGG--------CG-G-------------------GAT----AGATTTGG--AGTGCAAAC-C----TA-AAT-T-CCCT--TT--CGA
gi|13 : G-GACTAA--------CA----GAC----GGAC--AG---GTGCAAAC-C----TA-AAG-T-CCC----------C-TTCGTT-GGTAGTGGAatgact
gi|14 : ctG----GAC----GGAC--AG--AGTGCAAAC-CT---TA-AAG-T-CCC---CT--TCAT-TGC-TC-GGTAGGGGATAATAaaataaag
gi|15 : --CATGACAAAATAA-----T-----AAACTGATTTGCCGGACTGA--------CA-AACAGA--------Ctaa
gi|16 : G-GACATA--------CG----GAC----GGAC--AG--AGTACAAAC-C----TA-AAG-T-CCC---TT--
gi|17 : tact--------CG----GAC----GGAC--GG--AGTGCAAAC-T-------AAG-TCCCC---TT--CGAC-TTCATC-
gi|2 : ATGCACGTATGAA-ATAAATG--TTTCTGAAAA--CATGACGAAATAAA-AAGTGCGGTAAACTGATTTGCTGGACTGA--------CA-GACAGA--------CA----CAC----GGAC--AG--AGTGGAAAT-C----TA-AAG-T-CTC---CT--CGGC-TTTGTC-GGTAGGAGATTATAc
gi|3 : AATGAGTATCTGCAAGAACA-GAGGAAGCAA----GTGTGAAGAAGTGATTTTCTGGATTGATATACAGACG-GATGGATGGATGTCCG----GGC----AGAT--GG--AGTGCAAAT-C----TA-TAG-TATCC---TT--CGAC-TTCATC-GG
gi|4 : -GTGAATGTGAATAAATATCTGCAAG--AA-GAC-AGGAAAA-A-GAGCGTAAAACTGATTTGCCGAACTGA--------CA-GACAG---------------------------------------AC-C----TA-TAGTT-CCC---TT--CGAC-TTCGTT-GTTAGGG---TATAc
gi|5 : aaccatactcGAGGAAAACA-GTGTGGGAACCTGATTTGCTGGATTGA--------TG-GATGGACGTC----CG----GAC----AGAC--GG--AATGCAAAC-C----TA-TAT-T-CCCT--TT--CGAC-TTata
gi|6 : aaaaaCCGGACTGA--------CG-GACAGA--------CA----GAA----GGAC--AG--AGTGCAAA--C----TA-AAG-TACCC---TT--CGAC-TTCGGCTGGTAACGGACTAgggga
gi|7 : aGGAC-AA--------CGAGACGGA--------CA----GAC----AGAC--AG--AGTGC-AAC-C----TA-AAG----CC---CT--CGAC-TTCGTC-GGTaaaag
gi|8 : GGA--------CA----GAC----AGAC--AA--AGTGCAAAC-C----TT-AAG-T-GCC---TT--CGGC-TTCATC-AGTGGGAGACTAtagcaacctataaaag
gi|9 : tgattttccaG----AAC----GGAC--AG--AGTGCAAAA-C----CAGAAG-T-CCCCCATT--CGACTTTCGTC-GGTAGGAGataaa
blockSeqs : T G TGT AG AACA A T AAA C GT TATACAGA A A TGGATGTC TCTA . TTG GA G AATG G GT CCA TC T T
blockSeqs : . G AT AA CAT G T ACA T AA . . G CGTC . . G . . T . CT T . . .
blockSeqs : . CAT G C AA C TA . . T . . . G . . . . TC T . . .
blockSeqs : AA G A . T GG . . A . . . A . . . . TA . . . .
blockSeqs : . A . . . . . A . . . A . . . . TT . . . .
blockSeqs : . . A . . . A . . . . TA . . . .
blockSeqs : . . G . . . G . . . . T . . . .
blockSeqs : . . A . . . A . . . . T . . . .
blockSeqs : . . G . . . G . . . . T . . . .
blockSeqs : . . A . . . G . . . . T . . . .
blockSeqs : . G . . . A . . . . T . . . .
blockSeqs : . G . . . A . . . . T . . . .
blockSeqs : . . . . A . . . . T . . .
blockSeqs : . . . A . . . . T . .
blockSeqs : . . . . . . . . . .
blockSeqCons : AA** **** T**
originalCons : ATGCACG-GTGAATNTGAATGAGTATCTGCAAG--CATGACGAAGNAAA-A-GTGCGGAAAACTGATTTGCCGGACTGA--------CG-GACGGA--------CG----GAC----GGAC--GG--AGTGCAAAC-C----TA-AAG-T-CCC---TT--CGAC-TTCGTC-GGTAGGGGACTATA
finalCons : ATGCACG-GTGAATNTGAATGAGTATCTGCAAG--CATGACGAAGNAAAA--GTGCGGAAAACTGATTTGCCGGACTGA--------CG-GACGGA--------CG----GAC----GGAC--GG--AGTGCAAAC-C----TA-AAGT--CCC---TT--CGAC-TTCGTC-GGTAGGGGACTATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGCATTTAATTACTTCTTTGAACAGTGGCAGTCAATCTGAAC
Alignments
lowQualScore : 1 111 11111 3333 11111111 11111111 111
lowQualScore : 3 6 555 33 22222 3 0 1 0000 3 22 33333333 3 1 55555555 5555 5555 444 33 2 7777 2 111 999 33 2 3
lowQualScore : . . ... .. ..... . . . .... . .. ........ . . ........ .... .... ... .. . .... . ... ... .. . .
lowQualScore : 3 7 777 55 44444 7 3 0 3333 7 88 22222222 1 6 33333333 3333 3333 000 44 5 8888 5 666 444 44 9 1
consensus : ATGCACG-GTGAATNTGAATGAGTATCTGCAAG--CATGACGAAGNAAA-A-GTGCGGAAAACTGATTTGCCGGACTGA--------CG-GACGGA--------CG----GAC----GGAC--GG--AGTGCAAAC-C----TA-AAG-T-CCC---TT--CGAC-TTCGTC-GGTAGGGGACTATA
Reference ( family-1793 ) : ATGCACG-GTGAATNTGAATGAGTATCTGCAAG--CATGACGAAGNAAA-A-GTGCGGAAAACTGATTTGCCGGACTGA--------CG-GACGGA--------CG----GAC----GGAC--GG--AGTGCAAAC-C----TA-AAG-T-CCC---TT--CGAC-TTCGTC-GGTAGGGGACTATA
gi|1 : TGTACA-GT--ATC-GAATGAGTATCTGCATG--CCTGACAATGCACG---GTGAGGAAAACTGATTTGTTAAACTGA--------TG-CACAGG--------CG----GACTGAAGGAC--AG--AGTGCAAAC-C----AG-AAGTT-CCC---TC--TGGC-TATGTT-AGTAAGGAACTA
gi|10 : GA--------CG-GATAGA--------TG----GAC----GT-C--GGGAAAT-CAAACGCAATGTA-AAGGT-CCC---TTTCCGAC-TTCTCC-GGCGGGacagtattaaatgacaaatagtgaacagtctgaa
gi|11 : caGACTGA--------TG-GATGGA--------CATCTAGAC----AGAT--GG--AATGCAAAC-C----TA-CATCT-CCC---TT--CGAC-TTTGTC-TGTTGGGGtca
gi|12 : AAACTAATTTGCCGGACTGG--------CG-G-------------------GAT----AGATTTGG--AGTGCAAAC-C----TA-AAT-T-CCCT--TT--CGA
gi|13 : G-GACTAA--------CA----GAC----GGAC--AG---GTGCAAAC-C----TA-AAG-T-CCC----------C-TTCGTT-GGTAGTGGAatgact
gi|14 : ctG----GAC----GGAC--AG--AGTGCAAAC-CT---TA-AAG-T-CCC---CT--TCAT-TGC-TC-GGTAGGGGATAATAaaataaag
gi|15 : --CATGACAAAATAA-----T-----AAACTGATTTGCCGGACTGA--------CA-AACAGA--------Ctaa
gi|16 : G-GACATA--------CG----GAC----GGAC--AG--AGTACAAAC-C----TA-AAG-T-CCC---TT--
gi|17 : tact--------CG----GAC----GGAC--GG--AGTGCAAAC-T-------AAG-TCCCC---TT--CGAC-TTCATC-
gi|2 : ATGCACGTATGAA-ATAAATG--TTTCTGAAAA--CATGACGAAATAAA-AAGTGCGGTAAACTGATTTGCTGGACTGA--------CA-GACAGA--------CA----CAC----GGAC--AG--AGTGGAAAT-C----TA-AAG-T-CTC---CT--CGGC-TTTGTC-GGTAGGAGATTATAc
gi|3 : AATGAGTATCTGCAAGAACA-GAGGAAGCAA----GTGTGAAGAAGTGATTTTCTGGATTGATATACAGACG-GATGGATGGATGTCCG----GGC----AGAT--GG--AGTGCAAAT-C----TA-TAG-TATCC---TT--CGAC-TTCATC-GG
gi|4 : -GTGAATGTGAATAAATATCTGCAAG--AA-GAC-AGGAAAA-A-GAGCGTAAAACTGATTTGCCGAACTGA--------CA-GACAG---------------------------------------AC-C----TA-TAGTT-CCC---TT--CGAC-TTCGTT-GTTAGGG---TATAc
gi|5 : aaccatactcGAGGAAAACA-GTGTGGGAACCTGATTTGCTGGATTGA--------TG-GATGGACGTC----CG----GAC----AGAC--GG--AATGCAAAC-C----TA-TAT-T-CCCT--TT--CGAC-TTata
gi|6 : aaaaaCCGGACTGA--------CG-GACAGA--------CA----GAA----GGAC--AG--AGTGCAAA--C----TA-AAG-TACCC---TT--CGAC-TTCGGCTGGTAACGGACTAgggga
gi|7 : aGGAC-AA--------CGAGACGGA--------CA----GAC----AGAC--AG--AGTGC-AAC-C----TA-AAG----CC---CT--CGAC-TTCGTC-GGTaaaag
gi|8 : GGA--------CA----GAC----AGAC--AA--AGTGCAAAC-C----TT-AAG-T-GCC---TT--CGGC-TTCATC-AGTGGGAGACTAtagcaacctataaaag
gi|9 : tgattttccaG----AAC----GGAC--AG--AGTGCAAAA-C----CAGAAG-T-CCCCCATT--CGACTTTCGTC-GGTAGGAGataaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGCATTTAATTACTTCTTTGAACAGTGGCAGTCAATCTGAAC