lowQualScore : 22 11 4444444444444444444444444 111 22222222222222222 11 11111111111 11111 3 11
lowQualScore : 3 00 7 33 0 33 8 6666666666666666666666666 88 111 1 22222222222222222 5 66 11111111111 2 2 33 2 5 2 2 1 99999 2 3 3 44 3 44 3 3 3 66
lowQualScore : . .. . .. . .. . ......................... .. ... . ................. . .. ........... . . .. . . . . . ..... . . . .. . .. . . . ..
lowQualScore : 0 77 3 88 8 22 0 7777777777777777777777777 33 777 0 00000000000000000 2 00 99999999999 7 7 77 7 3 5 5 1 22222 9 1 1 22 3 66 8 3 3 88
consensus : NNNNTATCNTAAAA-TTTTA--TAGCGGATCT-AAGA----GGGG----TGTCGA-----TGTA-AAA---TAGGC-T---T-GT-GAACACTTCTCTC-TT-C--T------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAA--ATAT-TT-T-GA--ATAT-TT--TCTC-CA-TC-AT-TTTTTGTCAC
Reference ( gi|3 ) : AGTATATCATAAAA-TTTTA--TAGCAGATCT-AAGA----GTGG----TG-CGA-----TGTA-AAA---TAGGC-T---T-GT-GAACAATTCTCTC-TT-C--T------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAA--ATAT-TT-T-GA--ATAT-TT--TCTCGCA-TC-AT-TTTTTGTCAC
gi|2 : TATCATAAAAATTTTAAATCTCAGATCT-AAAA----G-GGAAGTTGTCAA-----T-TG-AAACACTAAGCCT---T-GTTGAACACTT-TCTC-TT-TCAT------ATATA-G-C--T-TATTT-G-GAGAGCT---GAA--ATAT-TTGT-GA--ATATGTT--TCGC-CATTC-ATATATTTGTCAC
gi|1 : aattccggtTATCCTAAA--TTTTA--TAGCGGATCT-AACAGGCGGTAG----TG--GA-----T-TATAAA---TAGGC-TTGAT-GT-GAACATTTCTCT--TC-C--TATTATAATATA-GAC--TCTA-TT-GTGATACTTTTGAAA--a
gi|5 : ttatcaaaacaggggaatccagttgtTAAAA-T---A--TGG--GATCT-AAGA----GGGA----TG-GGACGGTTTGTA-AAA---TAGGC-T---TCAT-GGA-AGT----AC-TT-G--T------ATATATG-T--T-TA-TCGG-GATACCTATGAA-----AC-GT-T-GT--ACAT-GT--TCTCGCG----AT-TTTTTGtgttggtttgatcaaaaatatt
gi|4 : TA--TAGCAGATCTAAAGA----G-GG----TGTCAA-----AGT--AAA---TA-GC-T---T-GT-GCACACTTCTCTTGTC-C--T------ATATA-G-CTTT-TA-TT-G-GATAGC-TTGAAATGATTT-TT-T-CA--ATAT-TT--TCTC-CA-TC-A---TTTTGTCA
gi|7 : T-AAGA----GGGG----TGTCGA-----TGTA-AAA---TAG------------------TTTTCTC-TTCC--T------ATGTA-G-C--T-TA-TT-G-GATAGCTCTGAAA--
gi|6 : tA-----TGTA-ACA---TAGG--T---T-GG-GAACACTTCTCT--TT-C--T------AAATG-G-C--T-TA-TT-T-TATGGCTTTGAAA--GTTT-GT-T-CA--ATt
gi|17 : ttt-C--T------ATATA-G-C--T-TA-TT-G-GATAGCCTTG-AA--ATAT-tg
gi|10 : ------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAAT-AT-T-TT-T-TA--ATAT-TT--TCTC-CA-TC-A--TTTTTGTCAC
gi|8 : ------ATATA-G-C--T-TAATT-G-ATTAGCTTTGAAA---TAT-TT-T-GA--GTAT-TTTGTCTC-CA-TC-AT-TTTTTGTCAC
gi|9 : ------ATATC-G-C--T-TA-TT-G-GATAGCTTTGAAAT-AT-T-TT-T-GAATATAT-TT--TCTC-CA-TCAAT-TTTTTGTCa
gi|12 : TGTA-G-C--T-TA-TT-G-GATATCTTTGAAAT-AT-T-TT-T-TA--ATAT-TT--TCTC-CA-TC-A--TTTTTGTCACc
gi|15 : ATA-G-C--T-TA-TT-G-GATAGCTTTG-AA--ATAT-TT-T-GA--ATAT-TT--TCTC-----C-AT-TTTT
gi|13 : ATA-G-C--T-TA-TT-G-GATAGCTTTGAAT--AT-T-TT-T-GA--ATAT-TT--T-TC-TA-TC-A--TTTTTGTCACgtta
gi|11 : aATA-G-C--T-T--TT-G-GATAGCTTTGAAAT-AT-T-TT-T-TA--ATAT-TC--TCTC-CA-TC----TTTTTGTCAC
gi|14 : ata-G-C--T-TA-TT-G-AATAGCTTTGAAA---TAT-TT-TTGA--ATAT-TT--TCTCCAA-TC-A--TTTTTGTCA
gi|16 : -G-GATAGCTTTG-AA--ATATGTT-T-GA--ATAT-TT--CCTC-CA-TC-AT-TTTTTGTCAC
Alignments
lowQualScore : 11 11 111 111 111 111111111 11 111111 1 11 11
lowQualScore : 1 33 3 11 4 6 111 6 222 77 4 5 000 555555555 5 0 3 5 44 5 000000 2 2 2 33 5 2 2 2 55 11 2 2 33 3 44 6 3 3 3 66
lowQualScore : . .. . .. . . ... . ... .. . . ... ......... . . . . .. . ...... . . . .. . . . . .. .. . . .. . .. . . . . ..
lowQualScore : 0 22 2 00 6 7 777 7 333 99 3 7 000 333333333 7 7 0 7 66 0 555555 5 5 5 44 0 4 4 1 66 77 7 9 99 1 22 2 1 1 1 66
consensus : NNNNTATCATAAAA-TTTTA--TAGCAGATCTAAGAGG-GG---T-GT--CGA--TGTA-AAA---TAGGC-T---T-GT-GAACACTT-CTCTC-TC-CT------ATATA-G-CT-T--A-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-TC-AT-TTTTTGTCAC
Reference ( family-1785 ) : NNNNTATCNTAAAA-TTTTA--TAGCGGATCTAAGAGG-GG---T-GT--CGA--TGTA-AAA---TAGGC-T---T-GT-GAACACTT-CTCTC-TT-CT------ATATA-G-CT-T--A-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-TC-AT-TTTTTGTCAC
gi|1 : TATCCTAAA--TTTTA--TAGCGGATCTAACAGGCGG---TAGT--GGA--T-TATAAA---TAGGC-TTGAT-GT-GAACATTT-CTCT--TC-CTATTATAATATA-GACTCT--A-TT-GTGATACTTTTGAAA--
gi|10 : ttatcaaaacaggggaatccagttgt------ATATA-G-CT-T--A-TT-G-GATAGCTTTG-AA--ATATT-TT-TTA--ATAT-TT--TCTC-C-A-TC-A--TTTTTGTCACtgttggtttgatcaaaaatatt
gi|11 : ATA-G-CT-T----TT-G-GATAGCTTTG-AA--ATATT-TT-TTA--ATAT-TC--TCTC-C-A-TC----TTTTTGTCAC
gi|12 : ataTGTA-G-CT-T--A-TT-G-GATATCTTTG-AA--ATATT-TT-TTA--ATAT-TT--TCTC-C-A-TC-A--TTTTTGTCAC
gi|13 : ATA-G-CT-T--A-TT-G-GATAGCTTTGAAT--AT--T-TT-TGA--ATAT-TT--T-TC-T-A-TC-A--TTTTTGTCAC
gi|14 : a-G-CT-T--A-TT-G-AATAGCTTTGAAAT-AT--T-TT-TGA--ATAT-TT--TCTC-CAA-TC-A--TTTTTGTCA
gi|15 : ATA-G-CT-T--A-TT-G-GATAGCTTTG-AA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-------TTTTTGTTA
gi|16 : -G-GATAGCTTTG-AA--ATA-TGTT-TGA--ATAT-TT--CCTC-C-A-TC-AT-TTTTTGTCAC
gi|17 : -CT------ATATA-G-CT-T--A-TT-G-GATAGCCTTG-AA--ATA-T-a
gi|2 : TATCATAAAAATTTTAAATCTCAGATCTAAAAGG-GAAGTT-GT--CAA--T-TG-AAACACTAAGCCT---T-GTTGAACACTTTCTCTT-TC-AT------ATATA-G-CT-T--ATTT-G-GAGAGCT---GAA--ATA-T-TTGTGA--ATATGTT--TCGC-C-ATTC-ATATATTTGTCAC
gi|3 : aattccggtTATCATAAAA-TTTTA--TAGCAGATCTAAGAGT-GG---T-G---CGA--TGTA-AAA---TAGGC-T---T-GT-GAACAATT-CTCTC-TT-CT------ATATA-G-CT-T--A-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTCGC-A-TC-AT-TTTTTGTCACa
gi|4 : agtaTA--TAGCAGATCTAAAGAG-GG---T-GT--CAA--AGTA-AA----TAG-C-T---T-GT-GCACACTT-CTCTTGTC-CT------ATATA-G-CT-TTTA-TT-G-GATAGCTT-GAAATGATT-T-TT-TCA--ATAT-TT--TCTC-C-A-TC-A---TTTTGTCA
gi|5 : TAAAA-T---A--TGG--GATCTAAGAGG-GA---T-GGGACGGTTTGTA-AAA---TAGGC-T---TCAT-GGA-AGT-----AC-TT-GT------ATATATG-TT-T--A-TCGG-GATACCTATGAA-----A-C-GT-TGT--ACAT-GT--TCTCGC-G----AT-TTTTTG
gi|6 : A--TGTA-ACA---TAGG--T---T-GG-GAACACTT-CTCT--TT-CT------AAATG-G-CT-T--A-TT-T-TATGGCTTTGAAA--GTT-T-GT-TCA--AT
gi|7 : tttTAAGAGG-GG---T-GT--CGA--TGTA-AAA---TAG------------------TT-TTCTC-TTCCT------ATGTA-G-CT-T--A-TT-G-GATAGCTCTGAAA--tg
gi|8 : t------ATATA-G-CT-T--AATT-G-ATTAGCTTTGAAA---TA-T-TT-TGA--GTAT-TTTGTCTC-C-A-TC-AT-TTTTTGTCACt
gi|9 : ------ATATC-G-CT-T--A-TT-G-GATAGCTTTG-AA--ATATT-TT-TGAATATAT-TT--TCTC-C-A-TCAAT-TTTTTGTCa
Alignments
lowQualScore : 11 11 111 111 111 111 11111111111 22 111111 1 11 11
lowQualScore : 33 3 11 6 111 6 222 222 55 000 66 11111111111 5 00 2 000000 2 2 33 2 5 2 2 2 55 11 2 2 33 3 44 6 3 3 3 66
lowQualScore : .. . .. . ... . ... ... .. ... .. ........... . .. . ...... . . .. . . . . . .. .. . . .. . .. . . . . ..
lowQualScore : 22 2 00 7 777 7 333 111 99 000 44 11111111111 7 44 5 555555 5 5 44 5 0 4 4 1 66 77 7 9 99 1 22 2 1 1 1 66
consensus : NNNNTATCATAAAA-TTTTA--TAGCAGATCTAAGAGG-GG---T-GT--CGAT--GTA-AAA---TAGGC-T---T-GT-G--AACACTT-CTCTT-TCCT------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-TC-AT-TTTTTGTCAC
Reference ( family-1785 ) : NNNNTATCATAAAA-TTTTA--TAGCAGATCTAAGAGG-GG---T-GT--CGAT--GTA-AAA---TAGGC-T---T-GT-G--AACACTT-CTCTC-TCCT------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-TC-AT-TTTTTGTCAC
gi|1 : TATCCTAAA--TTTTA--TAGCGGATCTAACAGGCGG---TAGT--GGAT---TATAAA---TAGGC-TTGAT-GT-G--AACATTT-CTCT--TCCTATTATAATATA-GAC--TCTA-TT-GTGATACTTTTGAAA--
gi|10 : ttatcaaaacaggggaatccagttgt------ATATA-G-C--T-TA-TT-G-GATAGCTTTG-AA--ATATT-TT-TTA--ATAT-TT--TCTC-C-A-TC-A--TTTTTGTCACtgttggtttgatcaaaaatatt
gi|11 : ATA-G-C--T-T--TT-G-GATAGCTTTG-AA--ATATT-TT-TTA--ATAT-TC--TCTC-C-A-TC----TTTTTGTCAC
gi|12 : ataTGTA-G-C--T-TA-TT-G-GATATCTTTG-AA--ATATT-TT-TTA--ATAT-TT--TCTC-C-A-TC-A--TTTTTGTCAC
gi|13 : ATA-G-C--T-TA-TT-G-GATAGCTTTGAAT--AT--T-TT-TGA--ATAT-TT--T-TC-T-A-TC-A--TTTTTGTCAC
gi|14 : a-G-C--T-TA-TT-G-AATAGCTTTGAAAT-AT--T-TT-TGA--ATAT-TT--TCTC-CAA-TC-A--TTTTTGTCA
gi|15 : ATA-G-C--T-TA-TT-G-GATAGCTTTG-AA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-------TTTTTGTTA
gi|16 : -G-GATAGCTTTG-AA--ATA-TGTT-TGA--ATAT-TT--CCTC-C-A-TC-AT-TTTTTGTCAC
gi|17 : CT------ATATA-G-C--T-TA-TT-G-GATAGCCTTG-AA--ATA-T-a
gi|2 : TATCATAAAAATTTTAAATCTCAGATCTAAAAGG-GAAGTT-GT--CAAT---TG-AAACACTAAGCCT---T-GTTG--AACACTTTCTCTT-TCAT------ATATA-G-C--T-TATTT-G-GAGAGCT---GAA--ATA-T-TTGTGA--ATATGTT--TCGC-C-ATTC-ATATATTTGTCAC
gi|3 : aattccggtTATCATAAAA-TTTTA--TAGCAGATCTAAGAGT-GG---T-G---CGAT--GTA-AAA---TAGGC-T---T-GT-G--AACAATT-CTCTC-TTCT------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTCGC-A-TC-AT-TTTTTGTCACa
gi|4 : agtaTA--TAGCAGATCTAAAGAG-GG---T-GT--CAAA--GT--AAA---TA-GC-T---T-GT-G--CACACTT-CTCTTGTCCT------ATATA-G-CTTT-TA-TT-G-GATAGC-TTGAAATGATT-T-TT-TCA--ATAT-TT--TCTC-C-A-TC-A---TTTTGTCA
gi|5 : TAAAA-T---A--TGG--GATCTAAGAGG-GA---T-GGGACGGTTTGTA-AAA---TAGGC-T---TCAT-GGAAGTACTT---------GT------ATATATG-T--T-TA-TCGG-GATACCTATGAA-----A-C-GT-TGT--ACAT-GT--TCTCGC-G----AT-TTTTTG
gi|6 : AT--GTA-ACA---TAGG--T---T-GG-G--AACACTT-CTCTT-TC-T------AAATG-G-C--T-TA-TT-T-TATGGCTTTGAAA--GTT-T-GT-TCA--AT
gi|7 : tttTAAGAGG-GG---T-GT--CGAT--GTA-AAA---TAG---T---T------------TT-CTCT--TCCT------ATGTA-G-C--T-TA-TT-G-GATAGCTCTGAAA--tg
gi|8 : t------ATATA-G-C--T-TAATT-G-ATTAGCTTTGAAA---TA-T-TT-TGA--GTAT-TTTGTCTC-C-A-TC-AT-TTTTTGTCACt
gi|9 : ------ATATC-G-C--T-TA-TT-G-GATAGCTTTG-AA--ATATT-TT-TGAATATAT-TT--TCTC-C-A-TCAAT-TTTTTGTCa
Alignments
lowQualScore : 11 11 111 111 111 111 11111111111 111111 1 11 11
lowQualScore : 33 3 11 6 111 6 222 222 55 000 66 11111111111 5 1 77 2 000000 2 2 33 2 5 2 2 2 55 11 2 2 33 3 44 6 3 3 3 66
lowQualScore : .. . .. . ... . ... ... .. ... .. ........... . . .. . ...... . . .. . . . . . .. .. . . .. . .. . . . . ..
lowQualScore : 22 2 00 7 777 7 333 111 99 000 44 11111111111 7 4 11 5 555555 5 5 44 5 0 4 4 1 66 77 7 9 99 1 22 2 1 1 1 66
consensus : NNNNTATCATAAAA-TTTTA--TAGCAGATCTAAGAGG-GG---T-GT--CGAT--GTA-AAA---TAGGC-T---T-GT-G--AACACTT-CTCTT-TCCT------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-TC-AT-TTTTTGTCAC
Reference ( family-1785 ) : NNNNTATCATAAAA-TTTTA--TAGCAGATCTAAGAGG-GG---T-GT--CGAT--GTA-AAA---TAGGC-T---T-GT-G--AACACTT-CTCTT-TCCT------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-TC-AT-TTTTTGTCAC
gi|1 : TATCCTAAA--TTTTA--TAGCGGATCTAACAGGCGG---TAGT--GGAT---TATAAA---TAGGC-TTGAT-GT-G--AACATTT-CTC-T-TCCTATTATAATATA-GAC--TCTA-TT-GTGATACTTTTGAAA--
gi|10 : ttatcaaaacaggggaatccagttgt------ATATA-G-C--T-TA-TT-G-GATAGCTTTG-AA--ATATT-TT-TTA--ATAT-TT--TCTC-C-A-TC-A--TTTTTGTCACtgttggtttgatcaaaaatatt
gi|11 : ATA-G-C--T-T--TT-G-GATAGCTTTG-AA--ATATT-TT-TTA--ATAT-TC--TCTC-C-A-TC----TTTTTGTCAC
gi|12 : ataTGTA-G-C--T-TA-TT-G-GATATCTTTG-AA--ATATT-TT-TTA--ATAT-TT--TCTC-C-A-TC-A--TTTTTGTCAC
gi|13 : ATA-G-C--T-TA-TT-G-GATAGCTTTGAAT--AT--T-TT-TGA--ATAT-TT--T-TC-T-A-TC-A--TTTTTGTCAC
gi|14 : a-G-C--T-TA-TT-G-AATAGCTTTGAAAT-AT--T-TT-TGA--ATAT-TT--TCTC-CAA-TC-A--TTTTTGTCA
gi|15 : ATA-G-C--T-TA-TT-G-GATAGCTTTG-AA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-------TTTTTGTTA
gi|16 : -G-GATAGCTTTG-AA--ATA-TGTT-TGA--ATAT-TT--CCTC-C-A-TC-AT-TTTTTGTCAC
gi|17 : CT------ATATA-G-C--T-TA-TT-G-GATAGCCTTG-AA--ATA-T-a
gi|2 : TATCATAAAAATTTTAAATCTCAGATCTAAAAGG-GAAGTT-GT--CAAT---TG-AAACACTAAGCCT---T-GTTG--AACACTTTCTCTT-TCAT------ATATA-G-C--T-TATTT-G-GAGAGCT---GAA--ATA-T-TTGTGA--ATATGTT--TCGC-C-ATTC-ATATATTTGTCAC
gi|3 : aattccggtTATCATAAAA-TTTTA--TAGCAGATCTAAGAGT-GG---T-G---CGAT--GTA-AAA---TAGGC-T---T-GT-G--AACAATT-CTCTC-TTCT------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTCGC-A-TC-AT-TTTTTGTCACa
gi|4 : agtaTA--TAGCAGATCTAAAGAG-GG---T-GT--CAAA--GT--AAA---TA-GC-T---T-GT-G--CACACTT-CTCTTGTCCT------ATATA-G-CTTT-TA-TT-G-GATAGC-TTGAAATGATT-T-TT-TCA--ATAT-TT--TCTC-C-A-TC-A---TTTTGTCA
gi|5 : TAAAA-T---A--TGG--GATCTAAGAGG-GA---T-GGGACGGTTTGTA-AAA---TAGGC-T---TCAT-GGAAGTACTT---------GT------ATATATG-T--T-TA-TCGG-GATACCTATGAA-----A-C-GT-TGT--ACAT-GT--TCTCGC-G----AT-TTTTTG
gi|6 : AT--GTA-ACA---TAGG--T---T-GG-G--AACACTT-CTCTT-TC-T------AAATG-G-C--T-TA-TT-T-TATGGCTTTGAAA--GTT-T-GT-TCA--AT
gi|7 : tttTAAGAGG-GG---T-GT--CGAT--GTA-AAA---TAG---T---T------------TT-CTCTT--CCT------ATGTA-G-C--T-TA-TT-G-GATAGCTCTGAAA--tg
gi|8 : t------ATATA-G-C--T-TAATT-G-ATTAGCTTTGAAA---TA-T-TT-TGA--GTAT-TTTGTCTC-C-A-TC-AT-TTTTTGTCACt
gi|9 : ------ATATC-G-C--T-TA-TT-G-GATAGCTTTG-AA--ATATT-TT-TGAATATAT-TT--TCTC-C-A-TCAAT-TTTTTGTCa
blockSeqs : AA T AA . AGT . GGA TTG G CAC CC TCATGGA T T GT C . T . TT . T G . A TG AT G G AT G TG G A T A TA
blockSeqs : A T . . . . T G A . C TGTTG . T T A . . . . . A . . A T AT . . . . . G . . . T
blockSeqs : A . . . . . T G A . C TGTG . T T C . . . . . . . . G . AT . . . . . . . . . T
blockSeqs : . . . . T G A . C TGTG . T T C . . . . . . . . A . A . . . . . . . . . T
blockSeqs : . . . . G A . . TGGG . T . G . . . . . . . . A . A . . . . . . . . . T
blockSeqs : . . . . T . . . C . . . . . . . . A . A . . . . . . . . . T
blockSeqs : . . . . . . . . . A . A . . . . . . . . . .
blockSeqs : . . . . . . . . A . A . . . . . . . . . .
blockSeqs : . . . . . . . . A . T . . . . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . . . . .
blockSeqs : . . . . . . . . . T . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : G** A* TGTG******* ****** A*
originalCons : NNNNTATCATAAAA-TTTTA--TAGCAGATCTAAGAGG-GG---T-GT--CGAT--GTA-AAA---TAGGC-T---T-GT-G--AACACTT-CTCTT-TCCT------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-TC-AT-TTTTTGTCAC
finalCons : NNNNTATCATAAAA-TTTTA--TAGCAGATCTAAGAGG-GG---T-GT--CGATG--TA-AAA---TAGGC-TTGTG-------AACACTT-CTCTT-TCCT------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-TC-AT-TTTTTGTCAC
Alignments
lowQualScore : 11 11 111 111 111 111 11111111111 111111 1 11 11
lowQualScore : 33 3 11 6 111 6 222 222 55 000 66 11111111111 5 1 77 2 000000 2 2 33 2 5 2 2 2 55 11 2 2 33 3 44 6 3 3 3 66
lowQualScore : .. . .. . ... . ... ... .. ... .. ........... . . .. . ...... . . .. . . . . . .. .. . . .. . .. . . . . ..
lowQualScore : 22 2 00 7 777 7 333 111 99 000 44 11111111111 7 4 11 5 555555 5 5 44 5 0 4 4 1 66 77 7 9 99 1 22 2 1 1 1 66
consensus : NNNNTATCATAAAA-TTTTA--TAGCAGATCTAAGAGG-GG---T-GT--CGAT--GTA-AAA---TAGGC-T---T-GT-G--AACACTT-CTCTT-TCCT------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-TC-AT-TTTTTGTCAC
Reference ( family-1785 ) : NNNNTATCATAAAA-TTTTA--TAGCAGATCTAAGAGG-GG---T-GT--CGAT--GTA-AAA---TAGGC-T---T-GT-G--AACACTT-CTCTT-TCCT------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-TC-AT-TTTTTGTCAC
gi|1 : TATCCTAAA--TTTTA--TAGCGGATCTAACAGGCGG---TAGT--GGAT---TATAAA---TAGGC-TTGAT-GT-G--AACATTT-CTC-T-TCCTATTATAATATA-GAC--TCTA-TT-GTGATACTTTTGAAA--
gi|10 : ttatcaaaacaggggaatccagttgt------ATATA-G-C--T-TA-TT-G-GATAGCTTTG-AA--ATATT-TT-TTA--ATAT-TT--TCTC-C-A-TC-A--TTTTTGTCACtgttggtttgatcaaaaatatt
gi|11 : ATA-G-C--T-T--TT-G-GATAGCTTTG-AA--ATATT-TT-TTA--ATAT-TC--TCTC-C-A-TC----TTTTTGTCAC
gi|12 : ataTGTA-G-C--T-TA-TT-G-GATATCTTTG-AA--ATATT-TT-TTA--ATAT-TT--TCTC-C-A-TC-A--TTTTTGTCAC
gi|13 : ATA-G-C--T-TA-TT-G-GATAGCTTTGAAT--AT--T-TT-TGA--ATAT-TT--T-TC-T-A-TC-A--TTTTTGTCAC
gi|14 : a-G-C--T-TA-TT-G-AATAGCTTTGAAAT-AT--T-TT-TGA--ATAT-TT--TCTC-CAA-TC-A--TTTTTGTCA
gi|15 : ATA-G-C--T-TA-TT-G-GATAGCTTTG-AA--ATA-T-TT-TGA--ATAT-TT--TCTC-C-A-------TTTTTGTTA
gi|16 : -G-GATAGCTTTG-AA--ATA-TGTT-TGA--ATAT-TT--CCTC-C-A-TC-AT-TTTTTGTCAC
gi|17 : CT------ATATA-G-C--T-TA-TT-G-GATAGCCTTG-AA--ATA-T-a
gi|2 : TATCATAAAAATTTTAAATCTCAGATCTAAAAGG-GAAGTT-GT--CAAT---TG-AAACACTAAGCCT---T-GTTG--AACACTTTCTCTT-TCAT------ATATA-G-C--T-TATTT-G-GAGAGCT---GAA--ATA-T-TTGTGA--ATATGTT--TCGC-C-ATTC-ATATATTTGTCAC
gi|3 : aattccggtTATCATAAAA-TTTTA--TAGCAGATCTAAGAGT-GG---T-G---CGAT--GTA-AAA---TAGGC-T---T-GT-G--AACAATT-CTCTC-TTCT------ATATA-G-C--T-TA-TT-G-GATAGCTTTGAAA--ATA-T-TT-TGA--ATAT-TT--TCTCGC-A-TC-AT-TTTTTGTCACa
gi|4 : agtaTA--TAGCAGATCTAAAGAG-GG---T-GT--CAAA--GT--AAA---TA-GC-T---T-GT-G--CACACTT-CTCTTGTCCT------ATATA-G-CTTT-TA-TT-G-GATAGC-TTGAAATGATT-T-TT-TCA--ATAT-TT--TCTC-C-A-TC-A---TTTTGTCA
gi|5 : TAAAA-T---A--TGG--GATCTAAGAGG-GA---T-GGGACGGTTTGTA-AAA---TAGGC-T---TCAT-GGAAGTACTT---------GT------ATATATG-T--T-TA-TCGG-GATACCTATGAA-----A-C-GT-TGT--ACAT-GT--TCTCGC-G----AT-TTTTTG
gi|6 : AT--GTA-ACA---TAGG--T---T-GG-G--AACACTT-CTCTT-TC-T------AAATG-G-C--T-TA-TT-T-TATGGCTTTGAAA--GTT-T-GT-TCA--AT
gi|7 : tttTAAGAGG-GG---T-GT--CGAT--GTA-AAA---TAG---T---T------------TT-CTCTT--CCT------ATGTA-G-C--T-TA-TT-G-GATAGCTCTGAAA--tg
gi|8 : t------ATATA-G-C--T-TAATT-G-ATTAGCTTTGAAA---TA-T-TT-TGA--GTAT-TTTGTCTC-C-A-TC-AT-TTTTTGTCACt
gi|9 : ------ATATC-G-C--T-TA-TT-G-GATAGCTTTG-AA--ATATT-TT-TGAATATAT-TT--TCTC-C-A-TCAAT-TTTTTGTCa