lowQualScore : 1 1 22 111111 1 111111111111111 111111111 1111111111 33333333333333333333333 77777777777777777777777
lowQualScore : 0 1 3 99 5 111111 99999 3 3 7 3 44 3 6 44 555 777777777777777 55 7 0 3 333 555 111111111 3 3333333333 444 3 3 44 3 00000000000000000000000 7777 44 888888 3 3 99999999999999999999999 66 4 4 2
lowQualScore : . . . .. . ...... ..... . . . . .. . . .. ... ............... .. . . . ... ... ......... . .......... ... . . .. . ....................... .... .. ...... . . ....................... .. . . .
lowQualScore : 5 8 2 66 7 888888 77777 5 5 0 1 22 1 2 88 888 777777777777777 00 4 4 3 777 444 999999999 1 5555555555 333 3 1 22 3 88888888888888888888888 1111 66 888888 1 3 66666666666666666666666 11 4 4 9
consensus : TTATTATACCTCATNTAAAGA-ATCACT----AGTAAAACAG--AATCTGATTGGCCGAGAAGGTCACGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTCG-TGTT--CCACCCCTTCGGA--TATCTCTTGTTTCA-CTTTCGT-TT---CCAGT----T---AAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------A-AACAT-GGCAAGGT-TTTATT-CA--TTTT--GATTTTAT--GCAAT-TTGC-TTGATTCGGTA
Reference ( gi|5 ) : TTATTTTACCTCTTCTTTAGA-ATCACT----AATAAAACAA--AATCTGATTGGCCGAGAAGGTCTCGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTCA-TGTC--CCATCCCTTCGGA--TATCTCTTGTTTCA-CTTTCGT-TT---CCAGT----T---AAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------A-AACAT-GGCAATGC-TTTATT-CA--ATTT--AATTTTAT--GCAAT-TTGC-TTGATTCGGTA
gi|1 : TTATTATACCTAATATAAAGA-ATCACTGGTCAGTAAAACAA--ATTCTGGTTGGAGGAGAAGGTCATGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTCG-TGTT--CCACCATTTCGAATGTATCTCTTGTTTCA-CTTTCAT-TT---CGAATGACGT---AGAC-G-ACAAAC----------
gi|9 : TATTTTACTTCATTTAAAGA-ATCCCT----TTTAAAACAG--ATTCTGAATGACCGAGAAGGTCACGTG-ACCGTC--GT-GCTTACCC-TGCT-ACAAAA---CG------------------TCGGA--AGTCTCTTGTTTCA-CTTTCGT-TT---CCAGT----T---CAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------A-AACAT-GGCAgttggacggtttgacggtttcatcattttggtgttatgcaattncaaacgttggacggtttcatcattttggtgttatgcaattggcttgatttggtatgataaacaatttattgcatgaatgttcggga
gi|13 : TATTATACCTCATCTACAGA-AACACT----AGTAAAACAG--AATGAGATTGGCCGAG---TTCACGTG-ACCGTC--GT-GCTCACCCCTGCA-AGAAAA---CGTCG-TGTT--CCACCCCTTCGGA--TATCTCTTGTTTCA-CGTACTT-TT-----------------AAT-GAACAAA
gi|3 : ATTATACCTCATCTAAAGA-ATCACT----AGTAAAACAA----TCTGATTGGCCGAGAAGGTTACGTG-ACCGTC--AT-GTTTACCC-TGCA-ACAAAA---ACTCG--GTT--CCACACCTTCGGA--TA---ATTTTTTCA-CTTTCG--TT---CAAGT----T---AAATCGAACAACT----------CCGACGTTG-TTCCG-AATGA---GC-AGA-----------------------TGA----C--AAA------C-AACATGGGCAAGGT-TTTAGT-CA--TTTTTGAATTTTATTAGAATT-TTGC-TT-ATT-GGTA
gi|2 : TACCTCTCATACAGATATAACT----AGTAAA-CAACAGATC-GATTGGTCGAGAAA-TCATGTGGAACGTTCTGTTGTTTACCCCTGCAGACAAAA---CACCAATGTT--CCACCCTTTTGGA--TA-CTTTTTTTTCAGTTTTCAT-TT---CCGGT----T---GA-T-GACAAAAC----------CCGA-G-TG-TTCCG-AATGA--CGCGAGA-----------------------CGA----C--AAC------A-AA-AT-GGCAAGGCAGTTATT-CATCATGT--A--TTTAT--GCAATCTTGTATTGATTCGGagtgatcaattctattggcatgaatgttcgtgga
gi|4 : tataAGA-ATCACT----AGTAAAGCAA--A-----------------GGTCACGTG-ACTGTT--GC-GTTTACCC-TGCA-AAAAAAATCCGTCG-TGTT--CCACCCTTTCGGA--TGAGTCTTGTTTCA-CTTTCGT-TT---CCAGT----TTTAAAAT-GAACCAAG----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------A-AATAT-GACAAGGT--------------------TTTTAT--GTAAT-TTGC-TTGATTAGGTAgtattaaaacaattattgccatgaatgtc
gi|10 : attatatctcataaaaAGA-ATCACT----AGTAAAACAT--AATCTGATTGGCCGAG---GTCACGTG-ACCGTC--GT-GTTTACAT-TGCA-ACAAAA---CGTCG-TGT----------------------TCTTGTCTCA-CTTTCGT-TT---CCAGT----G---AAAC-GAACAAAC----------CCGA-G-TG-TTCCACAATGACCCGC-AGA-----------------------CGA----CAAAAC------A-AATAT-AGCAAGGT-TTtaatgaacaatttattgcaataatgtatg
gi|7 : TCACT----AGTAAAACAG--AATCAGATTGACCGAGAAGGTCACGTG-GCCGTC--GT-GTTTACCC-TGCA-ACAAAA---CAT-----------------TCTGA--TGTCTTTT----------------T---CCAGA----T---AAAT-AAACAAACTCGAGTGTTTCCGA-G-TG-TTCCG-AATGA--TAC-AGG-----------------------CGA----C--AAT------G-AACAT-GGCAAGGT-T-----------TTC--GATTTTAT--GCAAT-TTGC-TTGATTCGG
gi|11 : T----ATTAAAACAG--AATCTGATTGGCCGAAAAGGTCACGTG-ACCGTT--GT-GTTTACCC-TGC--------------CG-TGTT--CCACCCCTTCGGA--TATCTC--GTTTCA-CTTTCA--TT---CCAGT----T---TAGT-GAACAAAC----------CCGA-G-TATTTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------ATGACAC-GG
gi|17 : TGATTGGCTGAAAAGGTCACGTG-ACCGTC--GT-GTTTACCC-TGCG-ACAAAtttt
gi|16 : CGAGGAGGTCACATG-ACTGTT--GT-ATTAGCCC-TGCA-ACAAAT---CATCG-TATT--CCctttcttacaagcgtttacagacacgttaacaa
gi|14 : ttattatacctcatgtaaataatcatcagttaggatAGGTCACGTG-ACCGTT--GT-GATTA----TGT-----------CGTCA-CGTTTTCTACTCCTTCGGC--TA-------------------T-TT---CT--------------T-GGGGAAAG----------CCGA-G-TG-TTCCG-AATGA--CG
gi|8 : cagaatattaaagaccgCGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CATCG-TGAA--CCACCCCTTCGGA--TATCTCTAGTTTCA-CTTTCGT-TT---TCAAT----T---AAAT-GAACAAAC----------C------------------AA--CTC-AGA-----------------------CGA----C--AAC------A---------------------T-CT--CTTT--GATTTTAT--GCAAT-TTGC-TTGATCCGGTA
gi|18 : TCTCTTGTTT-A-CTTTCGTGTTTCCCCAGT----T----AAT-GAACAA------------CCGG----G-TTGCG-CATAA--CGC-AG------------------------CGA----C---AC------A-AAtgataaacaatttattgcatgaatgttcgggaga
gi|20 : T-TT---CCAGT----T---AAAT-GAACAAAC----------CCGA-A-TG-TTCCG-AATGA--CGC-AAA-----------------------CGA----C--AAC------A-AACAT-GGCAAtggaggtatct
gi|15 : ----------CCGA-G-TG-TTCCA-AATGA--CGC-AGACGACAAAAAACCCCCCAAAAAACCAA----C--AACCCCAAAA-AACAT-GGCAGT----------------TT--GATTTTAT--GCAAT-TTGC-TTGATTCggtt
gi|19 : CG-AATGA--TGC-AGA-----------------------CGATGTCC--AAC------A-AAC-T-GGCAAGGT-TTTATTTCA--TTTT--GATTTAAT--GCAAA-TTGC-TTGATTC
gi|1 : C------A-AACGT-TGGACGGT-TTCAT--CA--TTTT--GGTGTTAT--GCAAT-TGGC-TTGATTTGGTA
gi|6 : ttattatacctaatataaagaatcactggtcagtaaaacaaattctggttggaggagaaggtcatgtgaccgtcgtgtttaccctgcaacaaaacgtcgtgttccaccatttcgaatgtatctcttgtttcactttcatttcgaatgacgtagacgacaaacgttggacggtttgacggtttcatcattttggtgttatgcaattnAT--GCAAT-TTGC-TTGACTAGGTAtgataaacaatttattgcatgaatgttcggga
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): GTACTTTGAAACTACTAGTATTTGTTTTTATCTTTGATACTTACTGCAGATTGAATTATTGTTACAAAAGTAAAAATAAGTCACGATTTCCCCCGATTTTTTTCCATTACAAACAGTGTAGCCTTGTTTTGATTCGGTATAATAAACAATT
Unaligned ( gi|21 ): AATCTTGCTTTGTTTCGGTATAATAAACAATTTATTGCATGGTAGTTTAGGAAAA
Unaligned ( gi|22 ): AATAAACAATTTATTGCATAAGTGTTCGGGTAATATGGAGATTTA
Alignments
lowQualScore : 1111111111 22222222222222222222222 333333333333333
lowQualScore : 1 0 4 7777 55 3 1 66 555 3 2 33 2 5 33 555 44 33 1 0 44 6 3 2 555 9999 2 2222222222 333 2 2 33 2 66666666666666666666666 6666 33 777777 2 444444444444444 0 55 55 3 4 1
lowQualScore : . . . .... .. . . .. ... . . .. . . .. ... .. .. . . .. . . . ... .... . .......... ... . . .. . ....................... .... .. ...... . ............... . .. .. . . .
lowQualScore : 0 2 4 7777 00 1 4 88 444 5 9 99 9 7 88 444 22 55 6 2 66 2 1 9 000 3333 9 5555555555 444 9 7 77 9 44444444444444444444444 1111 99 777777 7 444444444444444 8 55 00 6 0 6
consensus : TTATTATACCTCATNTAAAGA-ATCACT----AGTAAA--ACAGAATCTGATT---GGCCGAGAAGGTCACGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--G-TGTTCCACCCCTTCGGA--TATCTCTTGTTTCA-CTTTCGT-TT---CCAGTT---AAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT-GGCAAGGT-TTTAT-------T-CATTTT--GATTTTAT--GCAAT-TTGC-TTGATTCGGTA
Reference ( family-1748 ) : TTATTATACCTCATNTAAAGA-ATCACT----AGTAAA--ACAGAATCTGATT---GGCCGAGAAGGTCACGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--G-TGTTCCACCCCTTCGGA--TATCTCTTGTTTCA-CTTTCGT-TT---CCAGTT---AAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT-GGCAAGGT-TTTAT-------T-CATTTT--GATTTTAT--GCAAT-TTGC-TTGATTCGGTA
gi|1 : TTATTATACCTAATATAAAGA-ATCACTGGTCAGTAAA--ACAAATTCTGGTT---GGAGGAGAAGGTCATGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--G-TGTTCCACCATTTCGAATGTATCTCTTGTTTCA-CTTTCAT-TT------------------------------------CGA-A-TG-----------A--CGT-AGA-----------------------CG---------AC------AAACGT-TGGACGGT-TTGACGGTTTCAT-CATTTT--GGTGTTAT--GCAAT-T
gi|1 : C------AAACGT-TGGACGGT-TTCAT---------CATTTT--GGTGTTAT--GCAAT-TGGC-TTGATTTGGTAncaaacgttggacggtttcatcattttggtgttatgcaattggcttgatttggtatgataaacaatttattgcatgaatgttcggga
gi|10 : ttattatacctaatataaagaatcactggtcagtaaaacaaattctggttggaggagaaggtcatgtgaccgtcgtgtttaccctgcaacaaaacgtcgtgttccaccatttcgaatgtatctcttgtttcactttcatttcgaatgacgtagacgacaaacgttggacggtttgacggtttcatcattttggtgttatgcaattnAGA-ATCACT----AGTAAA--ACATAATCTGATT---GGCCGAG---GTCACGTG-ACCGTC--GT-GTTTACAT-TGCA-ACAAAA---CGTC--G-TGT--------------------TCTTGTCTCA-CTTTCGT-TT---CCAGTG---AAAC-GAACAAAC----------CCGA-G-TG-TTCCACAATGACCCGC-AGA-----------------------CGA----CAAAAC------AAATAT-AGCAAGGT-TTtgataaacaatttattgcatgaatgttcggga
gi|11 : T----ATTAAA--ACAGAATCTGATT---GGCCGAAAAGGTCACGTG-ACCGTT--GT-GTTTACCC-TGC--------------C--G-TGTTCCACCCCTTCGGA--TATCTC--GTTTCA-CTTTCA--TT---CCAGTT---TAGT-GAACAAAC----------CCGA-G-TATTTCCG-AATGA--CGC-AGA-----------------------CGA----C------------AACAT-GACACGGT-TTT
gi|13 : TATTATACCTCATCTACAGA-AACACT----AGTAAA--ACAGAATGAGATT---GGCCGAG---TTCACGTG-ACCGTC--GT-GCTCACCCCTGCA-AGAAAA---CGTC--G-TGTTCCACCCCTTCGGA--TATCTCTTGTTTCA-CGTACTT-TT-------------AAT-GAACAAA
gi|14 : CAGAAT---ATTAAAGACCGAG---GTCACGTG-ACCGTT--GT-GATTA----TGT-----------CGTCACG-TTTTCTACTCCTTCGGC--TA-------------------T-TT---CT----------T-GGGGAAAG----------CCGA-G-TG-TTCCG-AATGA--CG
gi|15 : ----------CCGA-G-TG-TTCCA-AATGA--CGC-AGACGACAAAAAACCCCCCAAAAAACCAA----C--AACCCCAAAAAACAT-GGCAG---------------------TTT--GATTTTAT--GCAAT-TTGC-TTGATTC
gi|16 : TTATTATACCTCATGTAAATA-ATCATC----AGT------TAGGAT------------CGAGGAGGTCACATG-ACTGTT--GT-ATTAGCCC-TGCA-ACAAAT---CATC--G-TATTCC
gi|17 : TGATT---GGCTGAAAAGGTCACGTG-ACCGTC--GT-GTTTACCC-TGCG-ACAAA
gi|18 : TCTCTTGTTT-A-CTTTCGTGTTTCCCCAGTT----AAT-GAACAA------------CCGG----G-TTGCG-CATAA--CGC-AG------------------------CGA----C---AC------AA--AT-GG--AGGT-ctttcttacaagcgtttacagacacgttaacaa
gi|19 : CG-AATGA--TGC-AGA-----------------------CGATGTCC--AAC------AAAC-T-GGCAAGGT-TTTAT-------TTCATTTT--GATTTAAT--GCAAA-TTGC-TTGATTCatct
gi|2 : TATACCTCTCATACAGATATAACT----AGTAAACAACAGA-TC-GATT---GGTCGAGAAA-TCATGTGGAACGTTCTGTTGTTTACCCCTGCAGACAAAA---CACC--AATGTTCCACCCTTTTGGA--TA-CTTTTTTTTCAGTTTTCAT-TT---CCGGTT---GA-T-GACAAAAC----------CCGA-G-TG-TTCCG-AATGA--CGCGAGA-----------------------CGA----C--AAC------AAA-AT-GGCAAGGCAGTTAT-------T-CATCAT--GTATTTAT--GCAATCTTGTATTGATTCGG
gi|20 : taT-TT---CCAGTT---AAAT-GAACAAAC----------CCGA-A-TG-TTCCG-AATGA--CGC-AAA-----------------------CGA----C--AAC------AAACAT-GGCAAGGT-Tgtattaaaacaattattgccatgaatgtc
gi|3 : ATTATACCTCATCTAAAGA-ATCACT----AGTAAA--ACA--ATCTGATT---GGCCGAGAAGGTTACGTG-ACCGTC--AT-GTTTACCC-TGCA-ACAAAA---ACTC--G--GTTCCACACCTTCGGA--TA---ATTTTTTCA-CTTTCG--TT---CAAGTT---AAATCGAACAACT----------CCGACGTTG-TTCCG-AATGA---GC-AGA-----------------------TGA----C--AAA------CAACATGGGCAAGGT-TTTAG-------T-CATTTTTGAATTTTATTAGAATT-TTGC-TT-ATT-GGTA
gi|4 : ATTATATCTCATAAAAAGA-ATCACT----AGTAAA--GCA--------------------AAGGTCACGTG-ACTGTT--GC-GTTTACCC-TGCA-AAAAAAATCCGTC--G-TGTTCCACCCTTTCGGA--TGAGTCTTGTTTCA-CTTTCGT-TT---CCAGTTTTAAAAT-GAACCAAG----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAATAT-GACAAGGT-------------------------TTTTAT--GTAAT-TTGC-TTGATTAGGTAagtgatcaattctattggcatgaatgttcgtgga
gi|5 : TTATTTTACCTCTTCTTTAGA-ATCACT----AATAAA--ACAAAATCTGATT---GGCCGAGAAGGTCTCGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--A-TGTCCCATCCCTTCGGA--TATCTCTTGTTTCA-CTTTCGT-TT---CCAGTT---AAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT-GGCAATGC-TTTAT-------T-CAATTT--AATTTTAT--GCAAT-TTGC-TTGATTCGGTAtaatgaacaatttattgcaataatgtatg
gi|6 : AT--GCAAT-TTGC-TTGACTAGGTA
gi|7 : cTCACT----AGTAAA--ACAGAATCAGATT---GACCGAGAAGGTCACGTG-GCCGTC--GT-GTTTACCC-TGCA-ACAAAA---CAT-----------------TCTGA--TGTCTTTT----------------T---CCAGAT---AAAT-AAACAAACTCGAGTGTTTCCGA-G-TG-TTCCG-AATGA--TAC-AGG-----------------------CGA----C--AAT------GAACAT-GGCAAGGT-----------------TTTC--GATTTTAT--GCAAT-TTGC-TTGATTCGGtaataaacaatttattgcatgaacgttcgggagaaatggaaatttatcaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctccctcactatcaagcaataaatgcatgtgttccactgttgcaaaataatgaa
gi|8 : CGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CATC--G-TGAACCACCCCTTCGGA--TATCTCTAGTTTCA-CTTTCGT-TT---TCAATT---AAAT-GAACAAAC----------C------------------AA--CTC-AGA-----------------------CGA----C--AAC------A---------------------------T-CTCTTT--GATTTTAT--GCAAT-TTGC-TTGATCCGGTA
gi|9 : TATTTTACTTCATTTAAAGA-ATCCCT----TTTAAA--ACAGATTCTGAAT---GACCGAGAAGGTCACGTG-ACCGTC--GT-GCTTACCC-TGCT-ACAAAA---CGTC--G----------------GA--AGTCTCTTGTTTCA-CTTTCGT-TT---CCAGTT---CAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT-GGCAtgataaacaatttattgcatgaatgttcgggaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTACTTTGAAACTACTAGTATTTGTTTTTATCTTTGATACTTACTGCAGATTGAATTATTGTTACAAAAGTAAAAATAAGTCACGATTTCCCCCGATTTTTTTCCATTACAAACAGTGTAGCCTTGTTTTGATTCGGTATAATAAACAATT
Unaligned ( gi|21 ): AATCTTGCTTTGTTTCGGTATAATAAACAATTTATTGCATGGTAGTTTAGGAAAA
Unaligned ( gi|22 ): AATAAACAATTTATTGCATAAGTGTTCGGGTAATATGGAGATTTA
Alignments
lowQualScore : 1111111111 22222222222222222222222 333333333333333
lowQualScore : 1 0 4 7777 55 3 1 66 555 3 2 33 2 5 33 555 44 33 1 0 44 6 3 2 555 9999 2 2222222222 333 2 2 33 2 66666666666666666666666 6666 33 777777 2 444444444444444 0 55 55 3 4 1
lowQualScore : . . . .... .. . . .. ... . . .. . . .. ... .. .. . . .. . . . ... .... . .......... ... . . .. . ....................... .... .. ...... . ............... . .. .. . . .
lowQualScore : 0 2 4 7777 00 1 4 88 444 5 9 99 9 7 88 444 22 55 6 2 66 2 1 9 000 3333 9 5555555555 444 9 7 77 9 44444444444444444444444 1111 99 777777 7 444444444444444 8 55 00 6 0 6
consensus : TTATTATACCTCATNTAAAGA-ATCACT----AGTAAA--ACAGAATCTGATT---GGCCGAGAAGGTCACGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--G-TGTTCCACCCCTTCGGA--TATCTCTTGTTTCA-CTTTCGT-TT---CCAGTT---AAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT-GGCAAGGT-TTTAT-------T-CATTTT--GATTTTAT--GCAAT-TTGC-TTGATTCGGTA
Reference ( family-1748 ) : TTATTATACCTCATNTAAAGA-ATCACT----AGTAAA--ACAGAATCTGATT---GGCCGAGAAGGTCACGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--G-TGTTCCACCCCTTCGGA--TATCTCTTGTTTCA-CTTTCGT-TT---CCAGTT---AAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT-GGCAAGGT-TTTAT-------T-CATTTT--GATTTTAT--GCAAT-TTGC-TTGATTCGGTA
gi|1 : TTATTATACCTAATATAAAGA-ATCACTGGTCAGTAAA--ACAAATTCTGGTT---GGAGGAGAAGGTCATGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--G-TGTTCCACCATTTCGAATGTATCTCTTGTTTCA-CTTTCAT-TT------------------------------------CGA-A-TG-----------A--CGT-AGA-----------------------CG---------AC------AAACGT-TGGACGGT-TTGACGGTTTCAT-CATTTT--GGTGTTAT--GCAAT-T
gi|1 : C------AAACGT-TGGACGGT-TTCAT---------CATTTT--GGTGTTAT--GCAAT-TGGC-TTGATTTGGTAncaaacgttggacggtttcatcattttggtgttatgcaattggcttgatttggtatgataaacaatttattgcatgaatgttcggga
gi|10 : ttattatacctaatataaagaatcactggtcagtaaaacaaattctggttggaggagaaggtcatgtgaccgtcgtgtttaccctgcaacaaaacgtcgtgttccaccatttcgaatgtatctcttgtttcactttcatttcgaatgacgtagacgacaaacgttggacggtttgacggtttcatcattttggtgttatgcaattnAGA-ATCACT----AGTAAA--ACATAATCTGATT---GGCCGAG---GTCACGTG-ACCGTC--GT-GTTTACAT-TGCA-ACAAAA---CGTC--G-TGT--------------------TCTTGTCTCA-CTTTCGT-TT---CCAGTG---AAAC-GAACAAAC----------CCGA-G-TG-TTCCACAATGACCCGC-AGA-----------------------CGA----CAAAAC------AAATAT-AGCAAGGT-TTtgataaacaatttattgcatgaatgttcggga
gi|11 : T----ATTAAA--ACAGAATCTGATT---GGCCGAAAAGGTCACGTG-ACCGTT--GT-GTTTACCC-TGC--------------C--G-TGTTCCACCCCTTCGGA--TATCTC--GTTTCA-CTTTCA--TT---CCAGTT---TAGT-GAACAAAC----------CCGA-G-TATTTCCG-AATGA--CGC-AGA-----------------------CGA----C------------AACAT-GACACGGT-TTT
gi|13 : TATTATACCTCATCTACAGA-AACACT----AGTAAA--ACAGAATGAGATT---GGCCGAG---TTCACGTG-ACCGTC--GT-GCTCACCCCTGCA-AGAAAA---CGTC--G-TGTTCCACCCCTTCGGA--TATCTCTTGTTTCA-CGTACTT-TT-------------AAT-GAACAAA
gi|14 : CAGAAT---ATTAAAGACCGAG---GTCACGTG-ACCGTT--GT-GATTA----TGT-----------CGTCACG-TTTTCTACTCCTTCGGC--TA-------------------T-TT---CT----------T-GGGGAAAG----------CCGA-G-TG-TTCCG-AATGA--CG
gi|15 : ----------CCGA-G-TG-TTCCA-AATGA--CGC-AGACGACAAAAAACCCCCCAAAAAACCAA----C--AACCCCAAAAAACAT-GGCAG---------------------TTT--GATTTTAT--GCAAT-TTGC-TTGATTC
gi|16 : TTATTATACCTCATGTAAATA-ATCATC----AGT------TAGGAT------------CGAGGAGGTCACATG-ACTGTT--GT-ATTAGCCC-TGCA-ACAAAT---CATC--G-TATTCC
gi|17 : TGATT---GGCTGAAAAGGTCACGTG-ACCGTC--GT-GTTTACCC-TGCG-ACAAA
gi|18 : TCTCTTGTTT-A-CTTTCGTGTTTCCCCAGTT----AAT-GAACAA------------CCGG----G-TTGCG-CATAA--CGC-AG------------------------CGA----C---AC------AA--AT-GG--AGGT-ctttcttacaagcgtttacagacacgttaacaa
gi|19 : CG-AATGA--TGC-AGA-----------------------CGATGTCC--AAC------AAAC-T-GGCAAGGT-TTTAT-------TTCATTTT--GATTTAAT--GCAAA-TTGC-TTGATTCatct
gi|2 : TATACCTCTCATACAGATATAACT----AGTAAACAACAGA-TC-GATT---GGTCGAGAAA-TCATGTGGAACGTTCTGTTGTTTACCCCTGCAGACAAAA---CACC--AATGTTCCACCCTTTTGGA--TA-CTTTTTTTTCAGTTTTCAT-TT---CCGGTT---GA-T-GACAAAAC----------CCGA-G-TG-TTCCG-AATGA--CGCGAGA-----------------------CGA----C--AAC------AAA-AT-GGCAAGGCAGTTAT-------T-CATCAT--GTATTTAT--GCAATCTTGTATTGATTCGG
gi|20 : taT-TT---CCAGTT---AAAT-GAACAAAC----------CCGA-A-TG-TTCCG-AATGA--CGC-AAA-----------------------CGA----C--AAC------AAACAT-GGCAAGGT-Tgtattaaaacaattattgccatgaatgtc
gi|3 : ATTATACCTCATCTAAAGA-ATCACT----AGTAAA--ACA--ATCTGATT---GGCCGAGAAGGTTACGTG-ACCGTC--AT-GTTTACCC-TGCA-ACAAAA---ACTC--G--GTTCCACACCTTCGGA--TA---ATTTTTTCA-CTTTCG--TT---CAAGTT---AAATCGAACAACT----------CCGACGTTG-TTCCG-AATGA---GC-AGA-----------------------TGA----C--AAA------CAACATGGGCAAGGT-TTTAG-------T-CATTTTTGAATTTTATTAGAATT-TTGC-TT-ATT-GGTA
gi|4 : ATTATATCTCATAAAAAGA-ATCACT----AGTAAA--GCA--------------------AAGGTCACGTG-ACTGTT--GC-GTTTACCC-TGCA-AAAAAAATCCGTC--G-TGTTCCACCCTTTCGGA--TGAGTCTTGTTTCA-CTTTCGT-TT---CCAGTTTTAAAAT-GAACCAAG----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAATAT-GACAAGGT-------------------------TTTTAT--GTAAT-TTGC-TTGATTAGGTAagtgatcaattctattggcatgaatgttcgtgga
gi|5 : TTATTTTACCTCTTCTTTAGA-ATCACT----AATAAA--ACAAAATCTGATT---GGCCGAGAAGGTCTCGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--A-TGTCCCATCCCTTCGGA--TATCTCTTGTTTCA-CTTTCGT-TT---CCAGTT---AAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT-GGCAATGC-TTTAT-------T-CAATTT--AATTTTAT--GCAAT-TTGC-TTGATTCGGTAtaatgaacaatttattgcaataatgtatg
gi|6 : AT--GCAAT-TTGC-TTGACTAGGTA
gi|7 : cTCACT----AGTAAA--ACAGAATCAGATT---GACCGAGAAGGTCACGTG-GCCGTC--GT-GTTTACCC-TGCA-ACAAAA---CAT-----------------TCTGA--TGTCTTTT----------------T---CCAGAT---AAAT-AAACAAACTCGAGTGTTTCCGA-G-TG-TTCCG-AATGA--TAC-AGG-----------------------CGA----C--AAT------GAACAT-GGCAAGGT-----------------TTTC--GATTTTAT--GCAAT-TTGC-TTGATTCGGtaataaacaatttattgcatgaacgttcgggagaaatggaaatttatcaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctccctcactatcaagcaataaatgcatgtgttccactgttgcaaaataatgaa
gi|8 : CGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CATC--G-TGAACCACCCCTTCGGA--TATCTCTAGTTTCA-CTTTCGT-TT---TCAATT---AAAT-GAACAAAC----------C------------------AA--CTC-AGA-----------------------CGA----C--AAC------A---------------------------T-CTCTTT--GATTTTAT--GCAAT-TTGC-TTGATCCGGTA
gi|9 : TATTTTACTTCATTTAAAGA-ATCCCT----TTTAAA--ACAGATTCTGAAT---GACCGAGAAGGTCACGTG-ACCGTC--GT-GCTTACCC-TGCT-ACAAAA---CGTC--G----------------GA--AGTCTCTTGTTTCA-CTTTCGT-TT---CCAGTT---CAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT-GGCAtgataaacaatttattgcatgaatgttcgggaga
blockSeqs : C T . CA T A CT AAA A G CT T C AG ATC AC AT T . T G G TCC TTAA C TCGAGTGTTT CGT T C CC G CGACAAAAAACCCCCCAAAAAAC TGTC AA CCCAAA G TTTATTT TG TA C A C
blockSeqs : G . . . G A CT . G . . . C A . . T T . T . . . A . . G . . . . . . . . . AGTTATT . . . . C
blockSeqs : A . . . G A GA . A . . . . A . . T T . T . . . T . . G . . . . . . . . . TTTAGT . . . . C
blockSeqs : C . . . G A CT . A . . . . A . . T T . A . . . G . . G . . . . . . . . . TTTATT . . . . A
blockSeqs : A . . . G A CT . A . . . . G . . T T . T . . . A . . G . . . . . . . . . TTCAT . . . . C
blockSeqs : C . . . G A CA . A . . . . A . . T T . T . . . A . . G . . . . . . . . . T . . . . A
blockSeqs : T . . . A A CT . A . . . . A . . T T . T . . . A . . A . . . . . . . . . . . . . . C
blockSeqs : . . . G A C . A . . . . A . . T C . T . . . A . . G . . . . . . . . . . . . . . C
blockSeqs : . . G T . . A . . . . A . . T A . . . . . A . . G . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . . . C . . G . . . . . . . . . . .
blockSeqs : . . . . . . . . . T . . . . . . . . . . . . G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : **** ** A*** TTTAT**********
originalCons : TTATTATACCTCATNTAAAGA-ATCACT----AGTAAA--ACAGAATCTGATT---GGCCGAGAAGGTCACGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--G-TGTTCCACCCCTTCGGA--TATCTCTTGTTTCA-CTTTCGT-TT---CCAGTT---AAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT-GGCAAGGT-TTTAT-------T-CATTTT--GATTTTAT--GCAAT-TTGC-TTGATTCGGTA
finalCons : TTATTATACCTCATNTAAAGA-ATCACT----AGTAAA--ACAGAATCTGATT---GGCCGAGAAGGTCACGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--G-TGTTCCACCCCTTCGGA--TATCTCTTGTTTCA-CTTTCGT-TT---CCAGTTA---AAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT-GGCAAGGTTTTAT----------CATTTT--GATTTTAT--GCAAT-TTGC-TTGATTCGGTA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTACTTTGAAACTACTAGTATTTGTTTTTATCTTTGATACTTACTGCAGATTGAATTATTGTTACAAAAGTAAAAATAAGTCACGATTTCCCCCGATTTTTTTCCATTACAAACAGTGTAGCCTTGTTTTGATTCGGTATAATAAACAATT
Unaligned ( gi|21 ): AATCTTGCTTTGTTTCGGTATAATAAACAATTTATTGCATGGTAGTTTAGGAAAA
Unaligned ( gi|22 ): AATAAACAATTTATTGCATAAGTGTTCGGGTAATATGGAGATTTA
Alignments
lowQualScore : 1111111111 22222222222222222222222 222222222
lowQualScore : 1 0 4 7777 55 3 1 66 555 3 2 33 2 5 33 555 44 33 1 0 44 6 3 2 555 9999 2 2222222222 333 2 2 33 2 66666666666666666666666 6666 33 777777 66 777777 222222222 0 55 55 3 4 1
lowQualScore : . . . .... .. . . .. ... . . .. . . .. ... .. .. . . .. . . . ... .... . .......... ... . . .. . ....................... .... .. ...... .. ...... ......... . .. .. . . .
lowQualScore : 0 2 4 7777 00 1 4 88 444 5 9 99 9 7 88 444 22 55 6 2 66 2 1 9 000 3333 9 5555555555 444 9 7 77 9 44444444444444444444444 1111 99 777777 33 777777 333333333 8 55 00 6 0 6
consensus : TTATTATACCTCATNTAAAGA-ATCACT----AGTAAA--ACAGAATCTGATT---GGCCGAGAAGGTCACGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--G-TGTTCCACCCCTTCGGA--TATCTCTTGTTTCA-CTTTCGT-TT---CCAGTT---AAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT--GGC------AAGGT-TTTA-T--CATTTT--GATTTTAT--GCAAT-TTGC-TTGATTCGGTA
Reference ( family-1748 ) : TTATTATACCTCATNTAAAGA-ATCACT----AGTAAA--ACAGAATCTGATT---GGCCGAGAAGGTCACGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--G-TGTTCCACCCCTTCGGA--TATCTCTTGTTTCA-CTTTCGT-TT---CCAGTT---AAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT--GGC------AAGGT-TTTA-T--CATTTT--GATTTTAT--GCAAT-TTGC-TTGATTCGGTA
gi|1 : TTATTATACCTAATATAAAGA-ATCACTGGTCAGTAAA--ACAAATTCTGGTT---GGAGGAGAAGGTCATGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--G-TGTTCCACCATTTCGAATGTATCTCTTGTTTCA-CTTTCAT-TT------------------------------------CGA-A-TG-----------A--CGT-AGA-----------------------CG---------AC------AAACGTTGGACGGTTTGACGGT-TTCA-T--CATTTT--GGTGTTAT--GCAAT-T
gi|1 : C------AAACGT--TGG------ACGGT-TTCA-T--CATTTT--GGTGTTAT--GCAAT-TGGC-TTGATTTGGTAncaaacgttggacggtttcatcattttggtgttatgcaattggcttgatttggtatgataaacaatttattgcatgaatgttcggga
gi|10 : ttattatacctaatataaagaatcactggtcagtaaaacaaattctggttggaggagaaggtcatgtgaccgtcgtgtttaccctgcaacaaaacgtcgtgttccaccatttcgaatgtatctcttgtttcactttcatttcgaatgacgtagacgacaaacgttggacggtttgacggtttcatcattttggtgttatgcaattnAGA-ATCACT----AGTAAA--ACATAATCTGATT---GGCCGAG---GTCACGTG-ACCGTC--GT-GTTTACAT-TGCA-ACAAAA---CGTC--G-TGT--------------------TCTTGTCTCA-CTTTCGT-TT---CCAGTG---AAAC-GAACAAAC----------CCGA-G-TG-TTCCACAATGACCCGC-AGA-----------------------CGA----CAAAAC------AAATAT--AGC------AAGGT-TTtgataaacaatttattgcatgaatgttcggga
gi|11 : T----ATTAAA--ACAGAATCTGATT---GGCCGAAAAGGTCACGTG-ACCGTT--GT-GTTTACCC-TGC--------------C--G-TGTTCCACCCCTTCGGA--TATCTC--GTTTCA-CTTTCA--TT---CCAGTT---TAGT-GAACAAAC----------CCGA-G-TATTTCCG-AATGA--CGC-AGA-----------------------CGA----C------------AACAT--GAC------ACGGT-TTT
gi|13 : TATTATACCTCATCTACAGA-AACACT----AGTAAA--ACAGAATGAGATT---GGCCGAG---TTCACGTG-ACCGTC--GT-GCTCACCCCTGCA-AGAAAA---CGTC--G-TGTTCCACCCCTTCGGA--TATCTCTTGTTTCA-CGTACTT-TT-------------AAT-GAACAAA
gi|14 : CAGAAT---ATTAAAGACCGAG---GTCACGTG-ACCGTT--GT-GATTA----TGT-----------CGTCACG-TTTTCTACTCCTTCGGC--TA-------------------T-TT---CT----------T-GGGGAAAG----------CCGA-G-TG-TTCCG-AATGA--CG
gi|15 : ----------CCGA-G-TG-TTCCA-AATGA--CGC-AGACGACAAAAAACCCCCCAAAAAACCAA----C--AACCCCAAAAAACAT--GGC------AG---------------TTT--GATTTTAT--GCAAT-TTGC-TTGATTC
gi|16 : TTATTATACCTCATGTAAATA-ATCATC----AGT------TAGGAT------------CGAGGAGGTCACATG-ACTGTT--GT-ATTAGCCC-TGCA-ACAAAT---CATC--G-TATTCC
gi|17 : TGATT---GGCTGAAAAGGTCACGTG-ACCGTC--GT-GTTTACCC-TGCG-ACAAA
gi|18 : TCTCTTGTTT-A-CTTTCGTGTTTCCCCAGTT----AAT-GAACAA------------CCGG----G-TTGCG-CATAA--CGC-AG------------------------CGA----C---AC------AA--AT--GG--------AGGT-ctttcttacaagcgtttacagacacgttaacaa
gi|19 : CG-AATGA--TGC-AGA-----------------------CGATGTCC--AAC------AAAC-T--GGC------AAGGT-TTTA-TTTCATTTT--GATTTAAT--GCAAA-TTGC-TTGATTCatct
gi|2 : TATACCTCTCATACAGATATAACT----AGTAAACAACAGA-TC-GATT---GGTCGAGAAA-TCATGTGGAACGTTCTGTTGTTTACCCCTGCAGACAAAA---CACC--AATGTTCCACCCTTTTGGA--TA-CTTTTTTTTCAGTTTTCAT-TT---CCGGTT---GA-T-GACAAAAC----------CCGA-G-TG-TTCCG-AATGA--CGCGAGA-----------------------CGA----C--AAC------AAA-AT--GGC------AAGGCAGTTATT--CATCAT--GTATTTAT--GCAATCTTGTATTGATTCGG
gi|20 : taT-TT---CCAGTT---AAAT-GAACAAAC----------CCGA-A-TG-TTCCG-AATGA--CGC-AAA-----------------------CGA----C--AAC------AAACAT--GGC------AAGGT-Tgtattaaaacaattattgccatgaatgtc
gi|3 : ATTATACCTCATCTAAAGA-ATCACT----AGTAAA--ACA--ATCTGATT---GGCCGAGAAGGTTACGTG-ACCGTC--AT-GTTTACCC-TGCA-ACAAAA---ACTC--G--GTTCCACACCTTCGGA--TA---ATTTTTTCA-CTTTCG--TT---CAAGTT---AAATCGAACAACT----------CCGACGTTG-TTCCG-AATGA---GC-AGA-----------------------TGA----C--AAA------CAACATG-GGC------AAGGT-TTTAGT--CATTTTTGAATTTTATTAGAATT-TTGC-TT-ATT-GGTA
gi|4 : ATTATATCTCATAAAAAGA-ATCACT----AGTAAA--GCA--------------------AAGGTCACGTG-ACTGTT--GC-GTTTACCC-TGCA-AAAAAAATCCGTC--G-TGTTCCACCCTTTCGGA--TGAGTCTTGTTTCA-CTTTCGT-TT---CCAGTTTTAAAAT-GAACCAAG----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAATAT--GAC------AAGGT-------------------TTTTAT--GTAAT-TTGC-TTGATTAGGTAagtgatcaattctattggcatgaatgttcgtgga
gi|5 : TTATTTTACCTCTTCTTTAGA-ATCACT----AATAAA--ACAAAATCTGATT---GGCCGAGAAGGTCTCGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CGTC--A-TGTCCCATCCCTTCGGA--TATCTCTTGTTTCA-CTTTCGT-TT---CCAGTT---AAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT--GGC------AATGC-TTTATT--CAATTT--AATTTTAT--GCAAT-TTGC-TTGATTCGGTAtaatgaacaatttattgcaataatgtatg
gi|6 : AT--GCAAT-TTGC-TTGACTAGGTA
gi|7 : cTCACT----AGTAAA--ACAGAATCAGATT---GACCGAGAAGGTCACGTG-GCCGTC--GT-GTTTACCC-TGCA-ACAAAA---CAT-----------------TCTGA--TGTCTTTT----------------T---CCAGAT---AAAT-AAACAAACTCGAGTGTTTCCGA-G-TG-TTCCG-AATGA--TAC-AGG-----------------------CGA----C--AAT------GAACAT--GGC------AAGGT-----------TTTC--GATTTTAT--GCAAT-TTGC-TTGATTCGGtaataaacaatttattgcatgaacgttcgggagaaatggaaatttatcaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctccctcactatcaagcaataaatgcatgtgttccactgttgcaaaataatgaa
gi|8 : CGTG-ACCGTC--GT-GTTTACCC-TGCA-ACAAAA---CATC--G-TGAACCACCCCTTCGGA--TATCTCTAGTTTCA-CTTTCGT-TT---TCAATT---AAAT-GAACAAAC----------C------------------AA--CTC-AGA-----------------------CGA----C--AAC--------------------------------A-T--CTCTTT--GATTTTAT--GCAAT-TTGC-TTGATCCGGTA
gi|9 : TATTTTACTTCATTTAAAGA-ATCCCT----TTTAAA--ACAGATTCTGAAT---GACCGAGAAGGTCACGTG-ACCGTC--GT-GCTTACCC-TGCT-ACAAAA---CGTC--G----------------GA--AGTCTCTTGTTTCA-CTTTCGT-TT---CCAGTT---CAAT-GAACAAAC----------CCGA-G-TG-TTCCG-AATGA--CGC-AGA-----------------------CGA----C--AAC------AAACAT--GGC------Atgataaacaatttattgcatgaatgttcgggaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GTACTTTGAAACTACTAGTATTTGTTTTTATCTTTGATACTTACTGCAGATTGAATTATTGTTACAAAAGTAAAAATAAGTCACGATTTCCCCCGATTTTTTTCCATTACAAACAGTGTAGCCTTGTTTTGATTCGGTATAATAAACAATT
Unaligned ( gi|21 ): AATCTTGCTTTGTTTCGGTATAATAAACAATTTATTGCATGGTAGTTTAGGAAAA
Unaligned ( gi|22 ): AATAAACAATTTATTGCATAAGTGTTCGGGTAATATGGAGATTTA