lowQualScore : 2 8888 2 5555 2
lowQualScore : . .... . .... .
lowQualScore : 4 2222 4 0000 4
consensus : GTGTATGGGACTGAC-GATTTTG----AAACTA-C----TGCGC-AACTC
Reference ( gi|11 ) : GTGTATGGGACTGAC-GATTTTG----AAACTA-C----TGCGC-AACTC
gi|10 : GTGTATGGGACTGAC-GATTTTG----GAACTA-C----TGCGC-AACTC
gi|9 : GTGTATGGGACTGAC-GATTTTG----AAACTT-C----TGCGC-AACTC
gi|14 : GTGTATGAGACTGAT-GATTTTG----GAACTA-C----TGCGC-AACTCc
gi|7 : GTGTATGGGACTGACCGATTTTG----TAACTA-C----TGCGC-AACTC
gi|8 : GTGTATGGGACTGAC-AATCTTG----GAACTA-C----TACGC-AACTCc
gi|6 : GTGTATGGGACTGAC-CATTTTG----GAACTA-A----TGCGC-AACTCc
gi|15 : GTGTATGGGACTGAC-CATTTTA----GAACTA-C----TGCGC-AACTcg
gi|16 : GTGTATGGGACTGAG-GATTTTG----AAGCTA-C----TGCAC-AATT
gi|4 : GTATATGGGACAGAC-GATTTTG----AAACTA-CTGCATGCGC-TACTC
gi|18 : GTGTATGGGACTGAC-G-TTTTG----AGGCCA-T----TGCGC-AACtg
gi|17 : GTGTGTGGAACTGAC-GATTTTA----GAACTA-C----TGCCC-
gi|3 : gGTGTATGGGACTGG--GATTTTGTC--AAGTTATC----TGCGCGAATTC
gi|13 : TGTATGGGACTGAC-GATTTTG----AAACTT-C----TGCGC-AACTCtgaaat
gi|12 : TGTATGGGACCGAC-AATTTTG----AAACTT-C----TGCGC-AACTCt
gi|1 : GTATGGGACCTAG-GATTTTGTCCAAGAGT--T----TGCGC-AACTCc
gi|19 : TGTGGGACTGAC-GATTTT-----AAATTT-C----TGCGC-AACTtgagaagtct
gi|20 : GGTCTGAC-GATTTTG----AAAGTA-C----TGCGC-AACTCtc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): GTATGGAACTGAGGATTTTTGTCCAAAGTTATTGCGCCAACTCCTGAA
Unaligned ( gi|5 ): TGTATGGGAATGACAACATTATAGGCACTATGACGACAAACTCT
Alignments
lowQualScore : 2 33 2 5555 2
lowQualScore : . .. . .... .
lowQualScore : 4 22 4 0000 4
consensus : GTGTATGGGACTGAC-GATTTTG--AAACTA-C----TGCGC-AACTC
Reference ( family-17206 ) : GTGTATGGGACTGAC-GATTTTG--AAACTA-C----TGCGC-AACTC
gi|10 : GTGTATGGGACTGAC-GATTTTG--GAACTA-C----TGCGC-AACTC
gi|11 : GTGTATGGGACTGAC-GATTTTG--AAACTA-C----TGCGC-AACTC
gi|12 : TGTATGGGACCGAC-AATTTTG--AAACTT-C----TGCGC-AACTC
gi|13 : TGTATGGGACTGAC-GATTTTG--AAACTT-C----TGCGC-AACTCc
gi|14 : GTGTATGAGACTGAT-GATTTTG--GAACTA-C----TGCGC-AACTCt
gi|15 : GTGTATGGGACTGAC-CATTTTA--GAACTA-C----TGCGC-AACT
gi|16 : GTGTATGGGACTGAG-GATTTTG--AAGCTA-C----TGCAC-AATT
gi|17 : GTGTGTGGAACTGAC-GATTTTA--GAACTA-C----TGCCC-
gi|18 : gGTGTATGGGACTGAC-G-TTTTG--AGGCCA-T----TGCGC-AAC
gi|19 : TGTGGGACTGAC-GATTTT---AAATTT-C----TGCGC-AACT
gi|20 : GGTCTGAC-GATTTTG--AAAGTA-C----TGCGC-AACTCtc
gi|3 : GTGTATGGGACTGG--GATTTTGTCAAGTTATC----TGCGCGAATTCca
gi|4 : GTATATGGGACAGAC-GATTTTG--AAACTA-CTGCATGCGC-TACTCtgaaat
gi|6 : GTGTATGGGACTGAC-CATTTTG--GAACTA-A----TGCGC-AACTCtg
gi|7 : GTGTATGGGACTGACCGATTTTG--TAACTA-C----TGCGC-AACTCcg
gi|8 : GTGTATGGGACTGAC-AATCTTG--GAACTA-C----TACGC-AACTCc
gi|9 : GTGTATGGGACTGAC-GATTTTG--AAACTT-C----TGCGC-AACTCc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GTATGGGACCTAGGATTTTGTCCAAGAGTTTGCGCAACTCTGAGAAGTCT
Unaligned ( gi|2 ): GTATGGAACTGAGGATTTTTGTCCAAAGTTATTGCGCCAACTCCTGAA
Unaligned ( gi|5 ): TGTATGGGAATGACAACATTATAGGCACTATGACGACAAACTCT
Alignments
lowQualScore : 2 33 2 5555 2
lowQualScore : . .. . .... .
lowQualScore : 4 22 4 0000 4
consensus : GTGTATGGGACTGAC-GATTTTG--AAACTA-C----TGCGC-AACTC
Reference ( family-17206 ) : GTGTATGGGACTGAC-GATTTTG--AAACTA-C----TGCGC-AACTC
gi|10 : GTGTATGGGACTGAC-GATTTTG--GAACTA-C----TGCGC-AACTC
gi|11 : GTGTATGGGACTGAC-GATTTTG--AAACTA-C----TGCGC-AACTC
gi|12 : TGTATGGGACCGAC-AATTTTG--AAACTT-C----TGCGC-AACTC
gi|13 : TGTATGGGACTGAC-GATTTTG--AAACTT-C----TGCGC-AACTCc
gi|14 : GTGTATGAGACTGAT-GATTTTG--GAACTA-C----TGCGC-AACTCt
gi|15 : GTGTATGGGACTGAC-CATTTTA--GAACTA-C----TGCGC-AACT
gi|16 : GTGTATGGGACTGAG-GATTTTG--AAGCTA-C----TGCAC-AATT
gi|17 : GTGTGTGGAACTGAC-GATTTTA--GAACTA-C----TGCCC-
gi|18 : gGTGTATGGGACTGAC-G-TTTTG--AGGCCA-T----TGCGC-AAC
gi|19 : TGTGGGACTGAC-GATTTT---AAATTT-C----TGCGC-AACT
gi|20 : GGTCTGAC-GATTTTG--AAAGTA-C----TGCGC-AACTCtc
gi|3 : GTGTATGGGACTGG--GATTTTGTCAAGTTATC----TGCGCGAATTCca
gi|4 : GTATATGGGACAGAC-GATTTTG--AAACTA-CTGCATGCGC-TACTCtgaaat
gi|6 : GTGTATGGGACTGAC-CATTTTG--GAACTA-A----TGCGC-AACTCtg
gi|7 : GTGTATGGGACTGACCGATTTTG--TAACTA-C----TGCGC-AACTCcg
gi|8 : GTGTATGGGACTGAC-AATCTTG--GAACTA-C----TACGC-AACTCc
gi|9 : GTGTATGGGACTGAC-GATTTTG--AAACTT-C----TGCGC-AACTCc
blockSeqs : C TC T TGCA G
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : GTGTATGGGACTGAC-GATTTTG--AAACTA-C----TGCGC-AACTC
finalCons : GTGTATGGGACTGAC-GATTTTG--AAACTA-C----TGCGC-AACTC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GTATGGGACCTAGGATTTTGTCCAAGAGTTTGCGCAACTCTGAGAAGTCT
Unaligned ( gi|2 ): GTATGGAACTGAGGATTTTTGTCCAAAGTTATTGCGCCAACTCCTGAA
Unaligned ( gi|5 ): TGTATGGGAATGACAACATTATAGGCACTATGACGACAAACTCT
Alignments
lowQualScore : 2 33 2 5555 2
lowQualScore : . .. . .... .
lowQualScore : 4 22 4 0000 4
consensus : GTGTATGGGACTGAC-GATTTTG--AAACTA-C----TGCGC-AACTC
Reference ( family-17206 ) : GTGTATGGGACTGAC-GATTTTG--AAACTA-C----TGCGC-AACTC
gi|10 : GTGTATGGGACTGAC-GATTTTG--GAACTA-C----TGCGC-AACTC
gi|11 : GTGTATGGGACTGAC-GATTTTG--AAACTA-C----TGCGC-AACTC
gi|12 : TGTATGGGACCGAC-AATTTTG--AAACTT-C----TGCGC-AACTC
gi|13 : TGTATGGGACTGAC-GATTTTG--AAACTT-C----TGCGC-AACTCc
gi|14 : GTGTATGAGACTGAT-GATTTTG--GAACTA-C----TGCGC-AACTCt
gi|15 : GTGTATGGGACTGAC-CATTTTA--GAACTA-C----TGCGC-AACT
gi|16 : GTGTATGGGACTGAG-GATTTTG--AAGCTA-C----TGCAC-AATT
gi|17 : GTGTGTGGAACTGAC-GATTTTA--GAACTA-C----TGCCC-
gi|18 : gGTGTATGGGACTGAC-G-TTTTG--AGGCCA-T----TGCGC-AAC
gi|19 : TGTGGGACTGAC-GATTTT---AAATTT-C----TGCGC-AACT
gi|20 : GGTCTGAC-GATTTTG--AAAGTA-C----TGCGC-AACTCtc
gi|3 : GTGTATGGGACTGG--GATTTTGTCAAGTTATC----TGCGCGAATTCca
gi|4 : GTATATGGGACAGAC-GATTTTG--AAACTA-CTGCATGCGC-TACTCtgaaat
gi|6 : GTGTATGGGACTGAC-CATTTTG--GAACTA-A----TGCGC-AACTCtg
gi|7 : GTGTATGGGACTGACCGATTTTG--TAACTA-C----TGCGC-AACTCcg
gi|8 : GTGTATGGGACTGAC-AATCTTG--GAACTA-C----TACGC-AACTCc
gi|9 : GTGTATGGGACTGAC-GATTTTG--AAACTT-C----TGCGC-AACTCc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GTATGGGACCTAGGATTTTGTCCAAGAGTTTGCGCAACTCTGAGAAGTCT
Unaligned ( gi|2 ): GTATGGAACTGAGGATTTTTGTCCAAAGTTATTGCGCCAACTCCTGAA
Unaligned ( gi|5 ): TGTATGGGAATGACAACATTATAGGCACTATGACGACAAACTCT