lowQualScore : 11 111
lowQualScore : 2 22 2 4 333 2 2 7777777 2 6 33 66 2 888888888 2 2 555
lowQualScore : . .. . . ... . . ....... . . .. .. . ......... . . ...
lowQualScore : 1 22 1 0 777 2 2 2222222 2 7 11 44 2 999999999 4 4 555
consensus : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAATTG-G-TAGTA-T-ATTTT
Reference ( gi|7 ) : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAATTG-G-TAGTA-A-ATTTT
gi|2 : TACTGGACCAAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAA-TG-G-TAACA-T-ATTTT
gi|4 : taTACTGGAC-AAAAAAAAGTTAA-GG-ATCATGA---TTTT-C-G-------AT-TA-G--TT--AA-G---------AAAAAATTG-G-TAGTA-T-ATTTTt
gi|1 : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-GCTTTA-AA-AAAGCTTTTTAAAAAATTG-G-TAGTA-T-GTTTTt
gi|12 : TACTGGAC-AAAA-ATAGTTAA-GG-ATCATAA---TTTT-C-G-------AA-TA-G--CT---A-A---------AAAAAATTG-G-TAGCA-T-ATTTTt
gi|11 : TACTGGAC-AAAA-AA-GTTAA-GG-ATCATGA---TTT--C-G-------AA-TA-G--TT--AA-A---------AAAAAATTG-GTTAGTA-T-ATTTTt
gi|6 : TACTGGAC-AAAA-AAAGTTGA-GG-ATCATGA---TTTT-T-G-------AA-AA-C--TT--AA-A---------ATTAAATTG-G-TAGTA-T-ATTTTt
gi|10 : aTACTGC-C-AAAA-AAAGTTAA-GGGATCATGA---TTTT-TTG-------AA-TA-G--TTA-AA-A------------AAATTG-G-TAGTA-T-ATTTTt
gi|21 : TACTGGAC-AAAA-AAAGTTAG-GG-ATCATGA---TTt
gi|9 : gaaataTACTGGA-------AAAGTTAAAGG-ATCAAGA---TTTTTC-G-------AAATA-G--TTA-AA-A---------AAAA-ATTG-G-TCATA-A-TCTTT
gi|18 : taTACTGGAC-AAAG-AATGTTAA-GG-ATCATGA---TATA-C-A-------AA-TATG--TTA-CA-A---------AGA
gi|19 : taTACTGGAC-AAAA--AAGTTAA-GG-ATCtgcc
gi|14 : tcctatgtcaagctttacaatgtaCTGGAC-CAAA-AAAGTTA--GG-ATCATGA---TTTT-C-G-------AA-TA-G--TT--AA-A---------AAAAAATTG-G-TAGTA-ATATTTT
gi|8 : TGAAC-AAAA-AAAGGTAA-GG-ATCATGACAATTTT-C-G-------AA-TA-G--TTT-TT-A---------AAAAAATTG-G-TAGAA-T-ATTTT
gi|13 : GGAC-AAAA--AAGTTAA-GG-ATCATG----TTTT-C-GGAAGTACAG-TA-G--TT--AA-A---------CAACAATT--G-TAGTA-T-ATTT
gi|15 : GAC-AAAA--AAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TACG--TTA-AA-A---------AAAACATTG-G-TAGT----ATTTT
gi|5 : GAC-AAAA-AAAGTAAG-GA-ATCATGA---TTTT-C-G-------AA-TA-T--TTACAA-A---------AAAAAAATG-G-TAGTATA-ATTTTtt
gi|16 : cgtAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------GA-TA-G--TT-----A---------AAAAAATTG-G-TAGTA-T-ATTTTt
gi|3 : aAC-AAAA-TAAGTTAA-GGCATCATGA---TTTT-C-G-------AA-TAGG--GTA-AACA---------AAGGAATTG-G-CAGTA-T-ATTT
gi|17 : ctgcgcC-AAAA-AAGATTAA-GG-ATCATGA---TTTT-C-G-------GA-TA-G--TT-----A---------AAAAAATTG-G-TAGTA-A-ATTTTc
gi|20 : G-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AA-----TGTG-TAGTA-T-ATTTt
Alignments
lowQualScore : 11
lowQualScore : 2 2 2 3 333 2 2 6666666 2 6 22 77 2 888888888 2 2 2 2
lowQualScore : . . . . ... . . ....... . . .. .. . ......... . . . .
lowQualScore : 0 0 0 8 555 1 1 8888888 1 3 99 77 1 444444444 2 2 2 2
consensus : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAATTG-G-TAGT-AT-ATTTT
Reference ( family-1707 ) : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAATTG-G-TAGT-AT-ATTTT
gi|1 : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-GCTTTA-AA-AAAGCTTTTTAAAAAATTG-G-TAGT-AT-GTTTT
gi|10 : TACTGC-C-AAAA-AAAGTTAA-GGGATCATGA---TTTT-TTG-------AA-TA-G--TTA-AA-A------------AAATTG-G-TAGT-AT-ATTTTt
gi|11 : TACTGGAC-AAAA-AA-GTTAA-GG-ATCATGA---TTT--C-G-------AA-TA-G--TT--AA-A---------AAAAAATTG-GTTAGT-AT-ATTTTt
gi|12 : TACTGGAC-AAAA-ATAGTTAA-GG-ATCATAA---TTTT-C-G-------AA-TA-G--CT---A-A---------AAAAAATTG-G-TAGC-AT-ATTTTt
gi|13 : GGAC-AAAA--AAGTTAA-GG-ATCATG----TTTT-C-GGAAGTACAG-TA-G--TT--AA-A---------CAACAATT--G-TAGT-AT-ATTTt
gi|14 : CTGGAC-CAAA-AAAGTTA--GG-ATCATGA---TTTT-C-G-------AA-TA-G--TT--AA-A---------AAAAAATTG-G-TAGTAAT-ATTTT
gi|15 : GAC-AAAA--AAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TACG--TTA-AA-A---------AAAACATTG-G-TAGT-AT-TTTTT
gi|16 : AC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------GA-TA-G--TT-----A---------AAAAAATTG-G-TAGT-AT-ATTTT
gi|17 : aC-AAAA-AAGATTAA-GG-ATCATGA---TTTT-C-G-------GA-TA-G--TT-----A---------AAAAAATTG-G-TAGT-AA-ATTTT
gi|18 : TACTGGAC-AAAG-AATGTTAA-GG-ATCATGA---TATA-C-A-------AA-TATG--TTA-CA-A---------AGAt
gi|19 : taTACTGGAC-AAAA--AAGTTAA-GG-ATCtgcc
gi|2 : tcctatgtcaagctttacaatgtaTACTGGACCAAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAA-TG-G-TAAC-AT-ATTTT
gi|20 : taG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AA-----TGTG-TAGT-AT-ATTTt
gi|21 : TACTGGAC-AAAA-AAAGTTAG-GG-ATCATGA---TT
gi|3 : gaaataAC-AAAA-TAAGTTAA-GGCATCATGA---TTTT-C-G-------AA-TAGG--GTA-AACA---------AAGGAATTG-G-CAGT-AT-ATTT
gi|4 : ctgcgcTACTGGAC-AAAAAAAAGTTAA-GG-ATCATGA---TTTT-C-G-------AT-TA-G--TT--AA-G---------AAAAAATTG-G-TAGT-AT-ATTTTc
gi|5 : GAC-AAAA-AAAGTAAG-GA-ATCATGA---TTTT-C-G-------AA-TA-T--TTACAA-A---------AAAAAAATG-G-TAGT-ATAATTTTt
gi|6 : cgtTACTGGAC-AAAA-AAAGTTGA-GG-ATCATGA---TTTT-T-G-------AA-AA-C--TT--AA-A---------ATTAAATTG-G-TAGT-AT-ATTTTt
gi|7 : aTACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAATTG-G-TAGT-AA-ATTTTt
gi|8 : TGAAC-AAAA-AAAGGTAA-GG-ATCATGACAATTTT-C-G-------AA-TA-G--TTT-TT-A---------AAAAAATTG-G-TAGA-AT-ATTTT
gi|9 : TACTGGA-------AAAGTTAAAGG-ATCAAGA---TTTTTC-G-------AAATA-G--TT--AA-A---------AAAAAATTG-G-TCAT-A--ATCTT
Alignments
lowQualScore : 11
lowQualScore : 2 2 2 3 333 2 2 6666666 2 6 22 77 2 888888888 2 2 2 2
lowQualScore : . . . . ... . . ....... . . .. .. . ......... . . . .
lowQualScore : 0 0 0 8 555 1 1 8888888 1 3 99 77 1 444444444 2 2 2 2
consensus : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAATTG-G-TAGT-AT-ATTTT
Reference ( family-1707 ) : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAATTG-G-TAGT-AT-ATTTT
gi|1 : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-GCTTTA-AA-AAAGCTTTTTAAAAAATTG-G-TAGT-AT-GTTTT
gi|10 : TACTGC-C-AAAA-AAAGTTAA-GGGATCATGA---TTTT-TTG-------AA-TA-G--TTA-AA-A------------AAATTG-G-TAGT-AT-ATTTTt
gi|11 : TACTGGAC-AAAA-AA-GTTAA-GG-ATCATGA---TTT--C-G-------AA-TA-G--TT--AA-A---------AAAAAATTG-GTTAGT-AT-ATTTTt
gi|12 : TACTGGAC-AAAA-ATAGTTAA-GG-ATCATAA---TTTT-C-G-------AA-TA-G--CT---A-A---------AAAAAATTG-G-TAGC-AT-ATTTTt
gi|13 : GGAC-AAAA--AAGTTAA-GG-ATCATG----TTTT-C-GGAAGTACAG-TA-G--TT--AA-A---------CAACAATT--G-TAGT-AT-ATTTt
gi|14 : CTGGAC-CAAA-AAAGTTA--GG-ATCATGA---TTTT-C-G-------AA-TA-G--TT--AA-A---------AAAAAATTG-G-TAGTAAT-ATTTT
gi|15 : GAC-AAAA--AAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TACG--TTA-AA-A---------AAAACATTG-G-TAGT-AT-TTTTT
gi|16 : AC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------GA-TA-G--TT-----A---------AAAAAATTG-G-TAGT-AT-ATTTT
gi|17 : aC-AAAA-AAGATTAA-GG-ATCATGA---TTTT-C-G-------GA-TA-G--TT-----A---------AAAAAATTG-G-TAGT-AA-ATTTT
gi|18 : TACTGGAC-AAAG-AATGTTAA-GG-ATCATGA---TATA-C-A-------AA-TATG--TTA-CA-A---------AGAt
gi|19 : taTACTGGAC-AAAA--AAGTTAA-GG-ATCtgcc
gi|2 : tcctatgtcaagctttacaatgtaTACTGGACCAAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAA-TG-G-TAAC-AT-ATTTT
gi|20 : taG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AA-----TGTG-TAGT-AT-ATTTt
gi|21 : TACTGGAC-AAAA-AAAGTTAG-GG-ATCATGA---TT
gi|3 : gaaataAC-AAAA-TAAGTTAA-GGCATCATGA---TTTT-C-G-------AA-TAGG--GTA-AACA---------AAGGAATTG-G-CAGT-AT-ATTT
gi|4 : ctgcgcTACTGGAC-AAAAAAAAGTTAA-GG-ATCATGA---TTTT-C-G-------AT-TA-G--TT--AA-G---------AAAAAATTG-G-TAGT-AT-ATTTTc
gi|5 : GAC-AAAA-AAAGTAAG-GA-ATCATGA---TTTT-C-G-------AA-TA-T--TTACAA-A---------AAAAAAATG-G-TAGT-ATAATTTTt
gi|6 : cgtTACTGGAC-AAAA-AAAGTTGA-GG-ATCATGA---TTTT-T-G-------AA-AA-C--TT--AA-A---------ATTAAATTG-G-TAGT-AT-ATTTTt
gi|7 : aTACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAATTG-G-TAGT-AA-ATTTTt
gi|8 : TGAAC-AAAA-AAAGGTAA-GG-ATCATGACAATTTT-C-G-------AA-TA-G--TTT-TT-A---------AAAAAATTG-G-TAGA-AT-ATTTT
gi|9 : TACTGGA-------AAAGTTAAAGG-ATCAAGA---TTTTTC-G-------AAATA-G--TT--AA-A---------AAAAAATTG-G-TCAT-A--ATCTT
blockSeqs : C A A G CAA T T GAAGTAC A C . AC C . T T A A
blockSeqs : . . . C . . . . . T . A . . . . . .
blockSeqs : . . . . . . . . . G . A . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons : ** A* *********
originalCons : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAATTG-G-TAGT-AT-ATTTT
finalCons : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAATTG-G-TAGT-AT-ATTTT
Alignments
lowQualScore : 11
lowQualScore : 2 2 2 3 333 2 2 6666666 2 6 22 77 2 888888888 2 2 2 2
lowQualScore : . . . . ... . . ....... . . .. .. . ......... . . . .
lowQualScore : 0 0 0 8 555 1 1 8888888 1 3 99 77 1 444444444 2 2 2 2
consensus : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAATTG-G-TAGT-AT-ATTTT
Reference ( family-1707 ) : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAATTG-G-TAGT-AT-ATTTT
gi|1 : TACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-GCTTTA-AA-AAAGCTTTTTAAAAAATTG-G-TAGT-AT-GTTTT
gi|10 : TACTGC-C-AAAA-AAAGTTAA-GGGATCATGA---TTTT-TTG-------AA-TA-G--TTA-AA-A------------AAATTG-G-TAGT-AT-ATTTTt
gi|11 : TACTGGAC-AAAA-AA-GTTAA-GG-ATCATGA---TTT--C-G-------AA-TA-G--TT--AA-A---------AAAAAATTG-GTTAGT-AT-ATTTTt
gi|12 : TACTGGAC-AAAA-ATAGTTAA-GG-ATCATAA---TTTT-C-G-------AA-TA-G--CT---A-A---------AAAAAATTG-G-TAGC-AT-ATTTTt
gi|13 : GGAC-AAAA--AAGTTAA-GG-ATCATG----TTTT-C-GGAAGTACAG-TA-G--TT--AA-A---------CAACAATT--G-TAGT-AT-ATTTt
gi|14 : CTGGAC-CAAA-AAAGTTA--GG-ATCATGA---TTTT-C-G-------AA-TA-G--TT--AA-A---------AAAAAATTG-G-TAGTAAT-ATTTT
gi|15 : GAC-AAAA--AAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TACG--TTA-AA-A---------AAAACATTG-G-TAGT-AT-TTTTT
gi|16 : AC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------GA-TA-G--TT-----A---------AAAAAATTG-G-TAGT-AT-ATTTT
gi|17 : aC-AAAA-AAGATTAA-GG-ATCATGA---TTTT-C-G-------GA-TA-G--TT-----A---------AAAAAATTG-G-TAGT-AA-ATTTT
gi|18 : TACTGGAC-AAAG-AATGTTAA-GG-ATCATGA---TATA-C-A-------AA-TATG--TTA-CA-A---------AGAt
gi|19 : taTACTGGAC-AAAA--AAGTTAA-GG-ATCtgcc
gi|2 : tcctatgtcaagctttacaatgtaTACTGGACCAAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAA-TG-G-TAAC-AT-ATTTT
gi|20 : taG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AA-----TGTG-TAGT-AT-ATTTt
gi|21 : TACTGGAC-AAAA-AAAGTTAG-GG-ATCATGA---TT
gi|3 : gaaataAC-AAAA-TAAGTTAA-GGCATCATGA---TTTT-C-G-------AA-TAGG--GTA-AACA---------AAGGAATTG-G-CAGT-AT-ATTT
gi|4 : ctgcgcTACTGGAC-AAAAAAAAGTTAA-GG-ATCATGA---TTTT-C-G-------AT-TA-G--TT--AA-G---------AAAAAATTG-G-TAGT-AT-ATTTTc
gi|5 : GAC-AAAA-AAAGTAAG-GA-ATCATGA---TTTT-C-G-------AA-TA-T--TTACAA-A---------AAAAAAATG-G-TAGT-ATAATTTTt
gi|6 : cgtTACTGGAC-AAAA-AAAGTTGA-GG-ATCATGA---TTTT-T-G-------AA-AA-C--TT--AA-A---------ATTAAATTG-G-TAGT-AT-ATTTTt
gi|7 : aTACTGGAC-AAAA-AAAGTTAA-GG-ATCATGA---TTTT-C-G-------AA-TA-G--TTA-AA-A---------AAAAAATTG-G-TAGT-AA-ATTTTt
gi|8 : TGAAC-AAAA-AAAGGTAA-GG-ATCATGACAATTTT-C-G-------AA-TA-G--TTT-TT-A---------AAAAAATTG-G-TAGA-AT-ATTTT
gi|9 : TACTGGA-------AAAGTTAAAGG-ATCAAGA---TTTTTC-G-------AAATA-G--TT--AA-A---------AAAAAATTG-G-TCAT-A--ATCTT