lowQualScore : 22222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222 1111111111 11111111 3333333333333 55555555555555555555555 1 11 111 1 1 1 1 1 111 1 11 1 22 333 44444 444 77777777777777777777777777777777 11 22 111 11111 5555555555555555 111 2 11111 111 3333333333 4444444444 11111111 22 66666666666666666666666666666666666666666666666666666 22222 11 1 11 7777777777777 33 1 777777777777777777777777 1 1 11 1 1 1 1 1 1 33 11 1 11 1 333 1111 444444444444444 11 222 777777777777777777777777777777777777777777777777777777777 11 22222222222 22222222222222222
lowQualScore : 6 9999999999999 4 2222222222 66 4 55 4 33333333 4444444444444 3 3 44444444444444444444444 2 3 5 33 666 3 3 6 3 3 5 444 8 8 3 8 0 33 0 55 000 11111 6 2 555 6 7 99 4 6 33333333333333333333333333333333 6 6 6 6 6 5 5 0 33 11 5 0 000 99999 8 6666666666666666 1 333 6 3 44444 444 1 7777777777 1111111111 5 3 88888888 5 44 1 44 88888888888888888888888888888888888888888888888888888 55555 88 3 88 3333333333333 6 11 3 111111111111111111111111 3 0 0 0 33 0 0 0 5 2 0 0 2 0 2 0 88 99 33 5 88 0 0 8 8 0 333 1 4444 2 8 888888888888888 11 8 5 000 0 444444444444444444444444444444444444444444444444444444444 22 5 88888888888 8 4 4 55 5 1 88888888888888888 5 4 66 0 2 9999 5
lowQualScore : . ............. . .......... .. . .. . ........ ............. . . ....................... . . . .. ... . . . . . . ... . . . . . .. . .. ... ..... . . ... . . .. . . ................................ . . . . . . . . .. .. . . ... ..... . ................ . ... . . ..... ... . .......... .......... . . ........ . .. . .. ..................................................... ..... .. . .. ............. . .. . ........................ . . . . .. . . . . . . . . . . . .. .. .. . .. . . . . . ... . .... . . ............... .. . . ... . ......................................................... .. . ........... . . . .. . . ................. . . .. . . .... .
lowQualScore : 7 8888888888888 4 1111111111 11 4 99 4 88888888 9999999999999 8 2 22222222222222222222222 5 0 0 88 222 3 3 7 3 3 0 000 0 0 2 0 0 88 0 00 888 66666 0 2 444 0 4 22 0 7 22222222222222222222222222222222 7 7 7 7 7 7 7 7 66 66 7 7 000 00000 0 8888888888888888 1 111 0 6 33333 333 7 0000000000 1111111111 0 4 22222222 7 00 0 22 11111111111111111111111111111111111111111111111111111 33333 33 3 33 3333333333333 0 77 3 111111111111111111111111 2 5 2 0 88 0 0 2 0 5 2 0 5 0 0 0 00 88 88 5 88 0 8 0 0 8 000 0 8888 2 0 444444444444444 00 0 0 444 8 222222222222222222222222222222222222222222222222222222222 22 6 55555555555 0 0 0 55 1 4 22222222222222222 7 4 11 2 4 4444 7
consensus : AAA-ATCCC-CAT--GAT--GAACCTCAAGG-ACA----C-AC--TGA--GCCTTTCAT-ATA-TCCAA-CTTTGTA-A------AACACAATAGCATAAATTCCATT--CATATATCCAACAGTA--TAGNTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCT-ACACCGTTCCTTAC---ATG-TA-CCTCG-ACTGA-CACA--CGTTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGCT-TAGTAGATAACCCAAAACTC-TAGATGNCATCGATAGT--GATTTGAANGA-TATT---------------GAAT--GAAA-------GAAA-AAA-AAAAC-CA-TCA-GAAATT-T-TCA--CTTGGA-ATTGGATG---TAC--G--TAGT-GA--------------ATAACTTGGTCAAACACG--GATGAT-TTTTAT-----GGAAACC-TACGCAGA-AATA-ATT-CTAAGGACGTAAAATATGA--TGACAAG-GAAAATGCAC-NT-----TTCATAGA-ATCTATTTCCTGACGTTGAGAGAGAA-------------A-AAA----------------TTGCTG------TT---T-AAATG---GNTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCACGATCA-AA-GTGAAT-GGCTCG-T-CTCAGT-GC-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAACCTGNATTCCA-CTTTNGTAAGAAT-TCAATGGAAA-TAAAATC-TGTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CTTTTTTAGTCTTTTG-AAAATA-TATTACTCATGCAAATGTC---TTCA-TTTGT---TGTTC-ATGAA--CCTTTGTGC-ACTGTTGGAGNATTTG----AA----------ATATC------CACTGAAT-----TTG-------AA-----ATACCCAACTG----GTTA-AC-AG-TTGGA-TAT--TTNAAATATCCCACTAG-----TATTCA-TTGGATANTTGA-AAT--ACACTACA----ACAAATA-ACAATGGATGACGTCATCGAAG
Reference ( gi|2 ) : AAA-ATTCCACAT--GAT--GCACCTCAAGG-ACA----C-AC--TGA--GCCTTTCAT-ATA-TCCAA-CTTTGTA-A------AACACAATAGCATAAATTTCATT--CATATATCCAACAATACTTAGCTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCACACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACA--CATTGC-TGATGCGGAT-ATTTTTTT--TTATTAAAAGCTGTAGTAGATAACTCAAAACTCTTAAATGTCATCGATAGT--GATTTGAAAGA-TATT---------------GAAT----AA-------GAAA-AAA-AAAAC-CA-TCA-GAAATT-T-TCA--CTTCCA-ATTGGATG---TAC--G--TAGT-GA--------------A-AATTTGGTCAAACACG--GATGATATTTTAT-----GGAAACC-TACGCAGA-AATATATT-CTAAGGACGTAATATATGAT-TGACAAG-GAAAATGCAC-TT-----TTCATAAA-ATCTATTTCTTGATGCTGAGAGAGAA-------------A-AAA----------------TTG----------------AAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCGTGATC--AA-GTGAATGGGTTCA-T-CTCAGTTGT-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAAGCTGCATTCCA-CTTTCGTAAGAAT-TTAGTGGAAA-TAAAATTGTGTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CTTTTTTAGTCTTTTG-AAAATA-TATTAC-CATGCAAATGTC---TTTA-TT-GT---T-TTT-AT-AA--CCTTTGTGC-ACTGTTGG-GTATTTG----AC----------ATATCC-----CACTGAAT-----TTG-------AA-----ATATCCCACTG----GTTA-AC-AG-TTGGA-TAT--TTAAAATATCCCACTAG-----TATTCA-TTAGATAGTTGA-AAT--ACACTACA----ACAAATA-ACAATGGATGACGTCATCGAAG
gi|1 : AAA-ATTCC-CA---GATTGAAACCTCAAGG-ACA----CTAC--TGAAGGCCTTCTATTATA-CCTAAACTTTGT----------------T----TAAA----------ATATA-CCAATAACA--TACATTTACCACAATTTAGACTAACCCGAAAACACCC-CATATCATACATGG-ACTGCGTGC--TT-ACAA-AACAGCTGCT-ACACCATTTCCTAC---ATGGTA-A-TCGCACCGA-CTCA--CATTGCGTGATGCGGAGGATTTTCT-----ATTAAAAGCTGTAG---ATAACACAAAACTC--AGATGTCATCGATAGTTTGATTTGAAAAAATACT---------------GAA-----AA-------TGAA-ATA-AAAAC-CA-TCA-GAAATT-T-TCAA-CTTGGA-ATTG--------AC--AA-TAGTTGA--------------ATAATTTGGT-AAACA----GATGAT-TTTTAT-----GGAAA---TGCGCAGA-AA-ATTTTGCTAAGGACGTAAAATATGATATACCAAGAGAAAAT-C-C-TT-----TTCATAAACATCTATTTGCTGATTC-GAGAGAGAA-------------A-AAAAATCCAGGATCAAAATTTGCT--------------AAATGTATTTTCCAATCACATGTGTCTTGAGACGTTAGATACAA-------------ACTCATGATCAAAA-GTGAA-------------------------CAATC-AAATTTAAAGAA--GGAG-ATCATCTTAACCTGCATTTCACCTTTCGTAAGAAT-TCAATGGAAA-TAAAATC-TG-GTCTTGATT--TCTAAATTAAACGTTTTACCCCTTTTTTTTAGTCTTTTG-AAAATACTATTACTCATGCAAATGT----TTCA-TT-GT---TGTTTAATGAA--CCTCTGTGCAACT-TTGGAGAATTTGGAAAACTTCCGTCTAAATAACTGTTAGCAGTGAATATC--TTG-------GAACTATATATTCCACAG----G----AC-GGTTTGGA-TATTCTTAAAATATCCCACTAG-----T-TTCA-TTGAATAGTTGAGAAT--ACACTACA----ACAAATA-AC
gi|6 : aaaAAA-ATCCC-CAT--GAT--GAACCCCAAGG-ACA----C-AC--TGA--GCCTTTCAT-ATA-TCCAA-CTTTGTA-AGCTTAAAACACAATAGCATAAATTCCATT--CATATATCCAACAGTA----GCTTTAC-ACAATA--GCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGAAGCTAACACCGTTCCTTAC---ATG-TA-CCTCG-ACTGA-CACA--CGTTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGCT---GTAGATAACCCAAAAGTC--AGATGCCATCGATAGT--GAATTGAAAGA-TATT---------------GAATAAGAAA-------GAAA-AAA-AAAAC-CA-TCA-GAAATT-T-TCA--CTTGGA-ATTGGATG---TACAAG--TAGtgagagtatcaaagtttttttt
gi|9 : aAAA-ATCCC---T--GGT--G-ACATCAAGA-AAA------ACCTTGA--GCCTTCAAT-AAAACCCAA-CTTTGTA-A------AACACAATAGCA-AAATTTCATT--C--ATATCCAGCAGT--TTAAAATTA--AC-ATATAGCCGAACCC-AA--CACCCAA-TATCGTACATGGAACAA-GTGCCTTTAACAACAACTGCTGCTCACATCATTCCTAACAAAATG-TACCCTCG-AC
gi|13 : taAAATATTCCCCGT--GAT--GAACCTCAAGGGACA----C-AC--TGA--GCCTTTCAT-AAT-TCCAA-CATTGTA-A------AACACAATAGCATAA-------------GTATGCAA-------TAGCCTAAC---------------CCC-AA--CACCC-C-TATCATATAT
gi|22 : aAAA-ATCCCTC-T--GAT--GAACCTTAAGG-ACA----C-AT--TGA--TCCTTTCAT-ATA---CA-------TA-T------AACACAATA
gi|3 : tAA-GTTTCACATTTGTA--GAACTTCAAAG-ACA----T-A---TG---------CAT-GTA-TCC---CTTTATATA------AACACAATAGTA
gi|20 : aaagctttagagaacttaaaacttagattacatcgataatgatttcattgatattgaatgagaaagaaaaaaacacatcaggaattttgacttgcaattagatatacgtagagaataaattggtcaaacacggatgatttttatggaaaactatgcaggcaataattcgaacgacgtaaaatattatgacaaggaaaatgcacaattcatgaaatatatttctgacgttgggagaggattccagatcaagatT--GAT--GAACCTCAAGG-ACA----C-AT--TGA--GTCTTTCAT-ATA-TCCAA-CTGTGTA-A------AACACAATctactcacaatcaaagtgaattggtttgttctcagtgccaatctatcaaaattcaaaatggagatttattaatcttaattcaactttagtaaaaacattaatggaagttacattgtatcttaatttctaaataacttttaacccccgtttgtgcactgttagatatttcagatatcaaactgaataacagttgtaaatttgaaatatcaaactggatagcagttgtgtatttaatataccccactagtattcattgaatagttgagatacactacaacaaataacaatggatgacgtcatcaaagtttattt
gi|21 : cccctcACCTCAAGG-ACA----C-TC--TGA--GCCTTTCAT-ATA-CCTAA-CTTTGTA-A------AATACCATAACATAACTT
gi|16 : ATCCCAAAG-ACAGATGC-AT--TGA--TCCTTTCAT-ATG-TACAA-CTGTGCA-A------AACACAGAAGCATAAAGTCCATTCACATATACCCAACAGTA
gi|10 : aC---ATG-TA-CCTCG-ACTGA-CACA--CGTTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGCT---GTAGATAACCCAAAAGTC--AGATGCCATCGATAGT--GAATTGAAAGA-TATT---------------GAATAAGAAA-------GAAA-AAA-AAAAC-CA-TCA-GAAATT-T-TCA--CTTGGA-ATTGGATG---TAC--
gi|7 : C---ATA-TA-CTTTG-ACTGATCATATGCATTTT-TGATAGAGAG-AATTTTTT--TTATTCAAAACT-T--TAGAAAACTCAAAACG--TAGATGACATCGATAGT--GTTTTGAATGA-TATTTA-------------GAATTTAGAAGCTGACCGAAA-AAATAAAAC-CCTTCG-GGAATTATATGA--CTTGGA-ATTGGATGTTCTAC--GCACAGT-GA--------------ATAACTTAGTCAAACACG--GATGAT-TAGTAT-----GGAAAC--------------------CTAAGGGCGTAAAATCTGA--TGACAAG-GAAAATGCACGTTTCATATTCATAGA-ATCTATTTC-AGACGTAGAGAGAGAG-------------A-
gi|3 : AAAGCTTTAG-AGA--ACTTAAAACT--TAGATTACATCGATAAT--GATTTCATTGA-TATT---------------GAAT----GA-------GAAAGAAA-AAAACACA-TCA-GGAATT-T-TGA--CTTGCA-ATTAGATA---TAC--G--TAGA-GA--------------ATAAATTGGTCAAACACG--GATGAT-TTTTAT-----GGAAAAC-TATGCAGGCAATA-ATT-CGAACGACGTAAAATATTA--TGACAAG-GAAAATGCAC-AA-----TTCATGAA-ATATATTTC-TGACGTTGGGAGAGGATTCCAGATC----A-AGA----------------TTACTATTGTGTTTATAT-AAAGG---GATACA--TGCATATGTCTTT-GAAGTT--CTACAAATGTGAAACTTCTACTCACAATCA-AA-GTGAATTGGTTTGTT-CTCAGTGCC-AA-TCTATCAAAATTCAAA-AT--GGAG-AT-TTATTAATCTTAATTCAA-CTTTAGTAAAAACATTAATGGAAG-TTACAT--TGTATCTTAATT--TCTAAA-TAACTT-TTAACCCC-CGTTTGTGCACTGTT---AGATA-T-TT-------CAGATATC----AAA-CT-G--------A-AT-AA--CAGTTGTAA-A-----------TTTG----AA----------ATATCA-----AACTGGATAGCAGTTGTGTATTTAAT----ATACCCCACTA----GTAT-TC-A--TTGAA-TAG--TTGAGATA---CACTA----------CA-----AC-----A-AAT--A----ACA----A-----------TGGATGACGTCATCAAAGg
gi|8 : CATCGATAGC--GTTTTGAATGA-TATTTGGGATTTAGAAGCTGAAC----AA-------AAGA-AAA-AAAA---A-TCAAGAAATT-T-GGA--CTTGGA-ATTGGATA---TAC--G--TAGT-GATGTTCCTTAGATAAA-AACTTAGTCAAACACA--GATGAT-TATTAT-----GGAAACC-TACGCGGATAATA-ATT-CCAAGGGTGAAA---ATG---TGACAAG-GAAAA-------T-----TTCATAGA-ATATATtttattt
gi|4 : aT-T-TCATCCTTCTATACTACTTG---TAC--A--TAGT-GA--------------ATAATTTGGTCAAACACG--GATGAT--TTTAT-----GGAAACC-TACGCAGA-AA-ATATTTCTAAGGACGTAAAATATG-T-TAACAAG-GGAAGTGCAC-TT-----CTCATAAA-ATCGATATCT-GATGCTGAGAGAGAAAAAGTTCCAGATCA-AGA----------------TTGCTGAATGTATTTATTTGAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCATGATC--AAAGTGAATGGGCTCA-TTCTCAGT-GTGAA-TCAATCGAAATTCAAA-AA--TGAG-AT-ATCTTAACCTGCATTCCA-CTTTCGTAGGAAT-TCAGCGGAAA-TAAAATCGTGT--CTTGATT--TCTAAATTAACTG-TTTACCCC-CCTTTTTAGTCTTTTG-AAAATA-TATTACTCATGCAAATGTC---TTTA-TTTGT---TGTTC-ATGAA--CCTTTGTGC-ACTGTTGG-GTATT-------------------------------------------TG-------AA-----ATACCCAACTG----AATA-AC-AG-TTGGA-TAT--TTAAA-TATCCCACTAG-----T---------------TGA-AA----CACTACA----ACAAATA-ACAATGGATGACGTCATCGAAG
gi|15 : --------------A-AATTTTATTTCACAC-----TGATATTCTATTTACAGAAAAGCGTATGCAGATAATA-ATT-CTAAGGACGTAAT---------GAAAAG-GAAAATGCAC-GT-----TTCGTAtttttta
gi|11 : ACTTGGTCAAACACACAGATGGTATT--AT-----GAAAACA-CAGACAGA-CATTAATG-ATAAAGCCGCACAATCTCAG--GAAAAG-GAAAATGCTC-AT-----TTCACAGA-A-CTA-TCCCTGACTTTGAGCGAGAA-------------A-GAC----------------TTg
gi|14 : atg-TGAAAAG-GAAAATGCAC-GT-----TTCGCAGA-ATCTATTTC-TGACGTTGAGAAAGAA-------------AGAAA----------------TTtccagatc
gi|5 : atctggCAATTGC-AAATCA-TCAAAATTAAAA-AAAAGGAATAT-ATTTTAATCTGAATAGCA-CTTTAGTCAGAAT-TTCATAAAAAGTAAAAT--TGTGTCTTAAATAATCTAAA-TAACT--TGTCCGCC-CTGTTTTAGTCTTTCGAAAAACA-TATTTCTCTTGCAAATTTCTTTTTTATTT-GTTTGT-TTC-AT-GAACCCTTTGTGC-ACTGTTGGAATATTTG----A---------------------------AAT-----T----------------ATA-ACCACGG----ATTA-AC-AG-TTGGATTAT--TTCAAATATCCCA-TAC-----GATTCA-TT-GATAGTGGA-ATTTAACAATACA----ACAAATAGGCAATGGATGACGTCATCGAAGccagatcgatcagcatgttttgctattcattatcgctctgcgggt
gi|12 : ctttcacgttctactaaacaaatgtgaaactgcttactaaaaccttctcttcctttttcgcgagTG-AAAATA-TATTACTCATGCAAATGTC---TTCA-TTTGT---TGTTT-ATGAA--CCTTTGTGC-ACTGTTGG-GAATTTG----AA----------ATATCC-----CACT-------------------AA-----ATA----ACT-----GT---AC-AG-TTGAA-TAT--TTGAAATATTCCACtt
gi|4 : AT-----TT--------AA-----ATATCCAACT-----GTTATTC-AG-TTGGG-TAT--TTCAAATA-CCCAACAG-----Tag
gi|12 : tttcatccttctatactacttgtacatagtgaataatttggtcaaacacggatgattttatggaaacctacgcagaaaatatttctaaggacgtaaaatatgttaacaagggaagtgcacttctcataaaatcgatatctgatgctgagagagaaaaagttccagatcaagattgctgaatgtatttatttgaatggctccatacatgtgtctttgacgttctacaaactcatgatcaaagtgaatgggctcattctcagtgtgaatcaatcgaaattcaaaaatgagatatcttaacctgcattccactttcgtaggaattcagcggaaataaaatcgtgtcttgatttctaaattaactgtttacccccctttttagtcttttgaaaatatattactcatgcaaatgtctttatttgttgttcatgaacctttgtgcAT-----TTC-------AA-----ATATTCAACTGTACAGTTA-TTTAG-TGGGA-TAT--TTCAAAT-TCCCAACAG-----Tatcccactagttgaaacactacaacaaataacaatggatgacgtcatcgaagtttttta
gi|3 : tgaaaatatattactcatgcaaatgtcttcatttgttgtttatgaacctttgtgc-------AA-----ATACACAACTG-----CTATCC-AG-TTTGA-TAT--TTCAAATTTACAACTGT-----TATTCAGTTTGATATCTGA-AAT--Aattccacag
gi|4 : aaagctttagagaacttaaaacttagattacatcgataatgatttcattgatattgaatgagaaagaaaaaaacacatcaggaattttgacttgcaattagatatacgtagagaataaattggtcaaacacggatgatttttatggaaaactatgcaggcaataattcgaacgacgtaaaatattatgacaaggaaaatgcacaattcatgaaatatatttctgacgttgggagaggattccagatcaagattactattgtgtttatataaagggatacatgcatatgtctttgaagttctacaaatgtgaaacttctactcacaatcaaagtgaattggtttgttctcagtgccaatctatcaaaattcaaaatggagatttattaatcttaattcaactttagtaaaaacattaatggaagttacattgtatcttaatttctaaataacttttaacccccgtttgtgcactgttagaTCA-ACTAG-TGGGA-TAT--TTAAA-TATCCAACTGT-----TATTCAGTTGGGTATTTCA-AAT--ACCCAACAGTGCACAAAaatataccccactagtattcattgaatagttgagatacactacaacaaataacaatggatgacgtcatcaaagtttattt
gi|12 : tttcatccttctatactacttgtacatagtgaataatttggtcaaacacggatgattttatggaaacctacgcagaaaatatttctaaggacgtaaaatatgttaacaagggaagtgcacttctcataaaatcgatatctgatgctgagagagaaaaagttccagatcaagattgctgaatgtatttatttgaatggctccatacatgtgtctttgacgttctacaaactcatgatcaaagtgaatgggctcattctcagtgtgaatcaatcgaaattcaaaaatgagatatcttaacctgcattccactttcgtaggaattcagcggaaataaaatcgtgtcttgatttctaaattaactgtttacccccctttttagtcttttgaaaatatattactcatgcaaatgtctttatttgttgttcatgaacc-AC-TG-TTGGG-AAT--TTGAAATATCCCACTAAATAACTGTACAGTTGAATATTTGA-AAT--ATTCCACA----aacactacaacaaataacaatggatgacgtcatcgaagtttttta
gi|17 : tgaaaatatattactcatgcaaatgtcttcatttgttgtttatgaacctttgtgcATATCCAAGTAG-----TATTAA-TTTAATAGTTGA-AAT--ACACTACA----ACAAAGA-ACAATGGGTGACGTTATTGAAGg
gi|19 : TAA-----TATTGA-TTGAATAATTAA-AAT--ACACAACA----GCAAATA-ACAATGTATGAAGTCATTAAActtt
gi|23 : g----ACAAATA-ACATTGGATGACGTCATTAAAGttttcttt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AATGCATGTTTTGCAAAATCCTTTTATTTTCAGAAAGAAAGTTCATATCGATTNTTGTAAATGCATGTTTTGC
Unaligned ( gi|24 ): TTGCTGAATGTATTTATTTGAATGGCTCCATGCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111 1111 111111 111 1 11 111 1 1 1 1 222 111 11 22 444 222 444444444444444444444444444444444 2222222222 111 1111 11111111 111111 11 66666666666666666666666666666666666666666666666666666666666666666666666 111 11 1 11 5555555555555 11 444444444444 22222 11 222 11 1 111 1 22222222222222222222222222222222222222222222222222222222222222222222222 11
lowQualScore : 000 000 77 4 3333 4 66 4 55 4 222222 666 99 3 5 000 1 9999 777 0 0 11 111 0 0 2 0 0 111 2 111 6 6 1 6 8 11 8 8 0 00 111 2 888 1 77 1 5 555555555555555555555555555555555 5 5 5 5 5 0 5 888 7777 77 6 5555555555 000 0 777 5 888 3 1111 0 88888888 888 2 0 1 3 4 4 4 4 2 2 222222 5 00 0 33333333333333333333333333333333333333333333333333333333333333333333333 1 777 33 0 33 5555555555555 2 33 888888888888 00000 8 0 6 8 11 8 8 1 1 8 1 8 8 222 0 11 11 5 8 0 8 8 0 444 0 8 8 8 6 6 22222222222222222222222222222222222222222222222222222222222222222222222 6 11 6 6 99 7 0 22 0 9 3 5 1 77 5
lowQualScore : ... ... .. . .... . .. . .. . ...... ... .. . . ... . .... ... . . .. ... . . . . . ... . ... . . . . . .. . . . .. ... . ... . .. . . ................................. . . . . . . . ... .... .. . .......... ... . ... . ... . .... . ........ ... . . . . . . . . . . ...... . .. . ....................................................................... . ... .. . .. ............. . .. ............ ..... . . . . .. . . . . . . . . ... . .. .. . . . . . . ... . . . . . . ....................................................................... . .. . . .. . . .. . . . . . .. .
lowQualScore : 000 999 99 4 9999 4 11 4 99 4 888888 555 22 2 7 000 0 4444 222 6 0 00 000 0 0 5 0 0 000 0 777 7 7 0 7 0 00 0 0 8 88 555 2 888 0 99 0 7 777777777777777777777777777777777 7 7 7 7 7 7 7 888 2222 99 7 0000000000 000 4 111 0 888 2 9999 2 11111111 888 0 4 7 7 4 4 4 4 0 6 888888 0 99 7 44444444444444444444444444444444444444444444444444444444444444444444444 0 555 88 0 88 0000000000000 0 22 555555555555 44444 0 8 4 0 00 0 0 4 0 0 0 0 0 000 8 00 66 0 0 0 0 0 8 000 6 0 0 0 7 7 33333333333333333333333333333333333333333333333333333333333333333333333 3 00 7 7 22 5 7 99 7 9 0 7 7 99 0
consensus : AAAAT---CCC-CGTGAT--GAACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTCCATT--CATATATCCAACAGTA--TAGCTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCA-CACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGCT-T-GTAGATAACTCAAAACTCT-AGATGNCATCGATAGT--GATTTGAANGA-TATT---------------GAAT---GAAA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---AC--G-TA--GT-GA----------AT---AACTTGGTCAAACACG--GATGAT-T---TTTATGGAAA--CCTACGCAGA-AA-T-A-ATT---CTAAGGACGTAAAATATGAT-G-AC-AAG-GAAAATGCACGT------TTCATAGA-ATCTATTTCCTGACGTTGAGAGAGAA---------A-AA-------------A----------------TTGCTG----------TT---------TAAATGGNT---CCA--TACATGTGTCTTT-GACGTTC--TACAA-------------ACTCACGATCAAA-GTGAA-TGGGTTCG-T-CTCAGT-G-C-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAACCTGCATTCCAC-TTTCGTAAGAAT-TTAATGGAAA-TAAAATC-TGTGTCTTGATT--TCTAAATTAACTGTTT-ACCCCCTTTTTT-AGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTT---ATTTGTT-GTT-TA-TGAACC-TTTGTGCA-CTGTTGGAGTATTTG--------------AAATAT-C------CACTG-------------AAT---TTGAAA-----TATCCAACTGGTTAACAGTT-GGAT-ATT--TAAAATATCCCACTAGTATTCATTGAATAGTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAG
Reference ( family-1705 ) : AAAAT---CCC-CATGAT--GAACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTCCATT--CATATATCCAACAGTA--TAGNTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCT-A-CACCGTTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGCT-TAGTAGATAACCCAAAACTCT-AGATGNCATCGATAGT--GATTTGAANGA-TATT---------------GAAT---GAAA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---AC--G-TA--GT-GA----------AT---AACTTGGTCAAACACG--GATGAT-T---TTTATGGAAA--CCTACGCAGA-AA-T-A-ATT---CTAAGGACGTAAAATATGAT-G-AC-AAG-GAAAATGCACNT------TTCATAGA-ATCTATTTCCTGACGTTGAGAGAGAA---------A-AA-------------A----------------TTGCTG----------TT---------TAAATGGNT---CCA--TACATGTGTCTTT-GACGTTC--TACAA-------------ACTCACGATCAAA-GTGAA-TGG-CTCG-T-CTCAGT-G-C-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAACCTGNATTCCAC-TTTNGTAAGAAT-TCAATGGAAA-TAAAATC-TGTGTCTTGATT--TCTAAATTAACTGTTT-ACCCCCTTTTTT-AGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTC---ATTTGTT-GTT-CA-TGAACC-TTTGTGCA-CTGTTGGAGNATTTG--------------AAATAT-C------CACTG-------------AAT---TTGAAA-----TACCCAACTGGTTAACAGTT-GGAT-ATT--TNAAATATCCCACTAGTATTCATTGGATANTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAG
gi|1 : AAAAT---TCC-CA-GATTGAAACCTCAAGG-ACA----CTACTGAAGGCCTTCTATTATA-CCTAAACTTTGT---------------T----TAAA----------ATATA-CCAATAACA--TACATTTACCACAATTTAGACTAACCCGAAAACACCC-CATATCATACATGG-ACTGCGTGC--TT-ACAA-AACAGCTGCT-A-CACCATTTCCTAC---ATGGTA-A-TCGCACCGA-CTCACA--TTGCGTGATGCGGAGGATTTTCT-----ATTAAAAGCT---GTAGATAACACAAAACTC--AGATGTCATCGATAGTTTGATTTGAAAAAATACT---------------GAA------AA------TGAAATA-AAAAC-CAT-CAGAAATT-T-TCAACTTGGAATTG--------AC--AATA--GTTGA----------AT---AATTTGGT-AAACA----GATGAT-T---TTTATGGAAA----TGCGCAGA-AA-----ATTTTGCTAAGGACGTAAAATATGAT-ATACCAAGAGAAAAT-C-CTT------TTCATAAACATCTATTTGCTGAT-TCGAGAGAGAA---------A-AA-------------AAATCCAGGATCAAAATTTGCT-----------------------AAATGTATTTTCCAATCACATGTGTCTTGAGACGTTAGATACAA-------------ACTCATGATCAAAAGTGAA---------------------------CAATC-AAATTTAAAGAA--GGAG-ATCATCTTAACCTGCATTTCACCTTTCGTAAGAAT-TCAATGGAAA-TAAAATC-TG-GTCTTGATT--TCTAAATTAAACGTTTTACCCCTTTTTTTTAGTCTTTTGAAAA-TACTATTACTCATGCAAATGT-TTC---ATT-GTT-GTT-TAATGAACC-TCTGTGCAACT-TTGGAGAATTTGGAAAACTTCCGTCTAAATAA-CTGTTAGCAGTG-------------AATATCTTGGAACTATATATTCCACAGG---ACGGTTTGGAT-ATTCTTAAAATATCCCACTAGT-TTCATTGAATAGTTGAGAAT--ACACTACAACAAATAA-
gi|10 : aaaC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGCT---GTAGATAACCCAAAAGTC--AGATGCCATCGATAGT--GAATTGAAAGA-TATT---------------GAATAA-GAAA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---AC--tgagagtatcaaagtttttttt
gi|11 : ----------AT---GACTTGGTCAAACACACAGATGGT-A---TT-ATGAAAA--CACAGACAGA-CA-TTA-ATG---ATAAAGCCGCACAATCTCAG-G-AA-AAG-GAAAATGCTCAT------TTCACAGA-A-CTA-TCCCTGACTTTGAGCGAGAA---------A-GA-------------C----------------TT
gi|12 : TGAAAA-TA-TATTACTCATGCAAATGTCTTC---ATTTGTT-GTT-TA-TGAACC-TTTGTGCA-CTGTTGG-GAATTTG--------------AAATATCC------CACTA-------------AAT-------------------AACT-GT--ACAGTT-GAAT-ATT--TGAAATATTCCACtccagatc
gi|13 : AAAATATTCCC-CGTGAT--GAACCTCAAGGGACA----C-ACTGA--GCCTTTCAT-AAT-TCCAA-CATTGTAA------AACACAATAGCATAAGT---ATG--CA-------------A--TAGCCTAAC---------------CCC-AA--CACCC-C-TATCATATATag
gi|14 : ATCTGGT-G-AA-AAG-GAAAATGCACGT------TTCGCAGA-ATCTATTT-CTGACGTTGAGAAAGAA---------AGAA-------------A----------------TT
gi|15 : ACACT--GAT-AT-TCTATTTACAGAAAAGCGTATGCAGATAA-T-A-ATT---CTAAGGACGTAA-------T-G-AA-AAG-GAAAATGCACGT------TTCGTAGccagatcgatcagcatgttttgctattcattatcgctctgcgggt
gi|16 : aaattttatttcAATCCCAAAG-ACAGATGC-ATTGA--TCCTTTCAT-ATG-TACAA-CTGTGCAA------AACACAGAAGCATAAAGTCCATTCACATATACCCAACAGTA--
gi|17 : ATATCCAAGTAGTATTAATTTAATAGTTGA-AAT--ACACTACAACAAAGAA-CAATGGGTGACGTTATTGAAG
gi|19 : TAATATTGATTGAATAATTAA-AAT--ACACAACAGCAAATAA-CAATGTATGAAGTCATTAAActtt
gi|2 : gAAAAT---TCCACATGAT--GCACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTTCATT--CATATATCCAACAATACTTAGCTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCA-CACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACA--TTGC-TGATGCGGAT-ATTTTTTTT--TATTAAAAGCTGTAGTAGATAACTCAAAACTCTTAAATGTCATCGATAGT--GATTTGAAAGA-TATT---------------GAAT-----AA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTCCAATTGGATGT---AC--G-TA--GT-GA----------A----AATTTGGTCAAACACG--GATGATAT---TTTATGGAAA--CCTACGCAGA-AA-T-ATATT---CTAAGGACGTAATATATGATTG-AC-AAG-GAAAATGCACTT------TTCATAAA-ATCTATTTCTTGATGCTGAGAGAGAA---------A-AA-------------A----------------TTG-------------------------AAATGGCT---CCA--TACATGTGTCTTT-GACGTTC--TACAA-------------ACTCGTGATCAA--GTGAA-TGGGTTCA-T-CTCAGTTG-T-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAAGCTGCATTCCAC-TTTCGTAAGAAT-TTAGTGGAAA-TAAAATTGTGTGTCTTGATT--TCTAAATTAACTGTTT-ACCCCCTTTTTT-AGTCTTTTGAAAA-TA-TATTAC-CATGCAAATGTCTTT---ATT-GTT--TT-TA-T-AACC-TTTGTGCA-CTGTTGG-GTATTTG--------------ACATATCC------CACTG-------------AAT---TTGAAA-----TATCCCACTGGTTAACAGTT-GGAT-ATT--TAAAATATCCCACTAGTATTCATTAGATAGTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAGttttcttt
gi|20 : ---CCC-TCTGAT--GAACCTCAAGG-ACA----C-ATTGA--GTCTTTCAT-ATA-TCCAA-CTGTGTAA------AACACAAT
gi|21 : cACCTCAAGG-ACA----C-TCTGA--GCCTTTCAT-ATA-CCTAA-CTTTGTAA------AATACCATAACATAACTT
gi|22 : AAAAT---CCC-TCTGAT--GAACCTTAAGG-ACA----C-ATTGA--TCCTTTCAT-ATA---CA-------TAT------AACACAATA
gi|23 : tACAAATAA-CATTGGATGACGTCATTAAAG
gi|3 : AAAGCT-T--TAGAGAACTTAAAACT-T-AGATTACATCGATAAT--GATTTCATTGA-TATT---------------GAAT---GAGA-------AAGAAA-AAAACACAT-CAGGAATT-T-TGA-CTTGCAATTAGATAT---AC--G-TA--GA-GA----------AT---AAATTGGTCAAACACG--GATGAT-T---TTTATGGAAA--ACTATGCAGGCAA-T-A-ATT---CGAACGACGTAAAATATTAT-G-AC-AAG-GAAAATGCACAA------TTCATGAA-ATATATTT-CTGACGTTGGGAGAGGATTCCAGATCA-AG-------------A----------------TTACTA----------TTGTGTTTATATAAAGGGAT---ACA--TGCATATGTCTTT-GAAGTTC--TACAAATGTGAAACTTCTACTCACAATCAAA-GTGAATTGG-TTTGTT-CTCAGT-GCC-AA-TCTATCAAAATTCAAA-AT--GGAG-AT-TTATTAATCTTAATTCAAC-TTTAGTAAAAACATTAATGGAAG-TTACAT--TGTATCTTAATT--TCTAAA-TAACTTTTA-ACCCCCGTTTttttctaacctca
gi|3 : -TTTGTGCA-CTGTTAGA-TATTTC--------------AGATAT-CA-----AACTGAATAACAGTTGTAAAT---TTGAAA-----TATCAAACTGGATAGCAGTT-GTGT-ATT--TAATATACCCCACTAGTATTCATTGAATAGTTGA-GAT--ACACTACAACAAATAA-CAATGGATGACGTCATCAAAGgtgcactgttagatatttcagatatcaaactgaataacagttgtaaatttgaaatatcaaactggatagcagttgtgtatttaatataccccactagtattcattgaatagttgagatacactacaacaaataacaatggatgacgtcatcaaagtttattt
gi|4 : aaagctttagagaacttaaaacttagattacatcgataatgatttcattgatattgaatgagaaagaaaaaaacacatcaggaattttgacttgcaattagatatacgtagagaataaattggtcaaacacggatgatttttatggaaaactatgcaggcaataattcgaacgacgtaaaatattatgacaaggaaaatgcacaattcatgaaatatatttctgacgttgggagaggattccagatcaagattactattgtgtttatataaagggatacatgcatatgtctttgaagttctacaaatgtgaaacttctactcacaatcaaagtgaattggtttgttctcagtgccaatctatcaaaattcaaaatggagatttattaatcttaattcaactttagtaaaaacattaatggaagttacattgtatcttaatttctaaataacttttaacccccgTGT---AC--A-TA--GT-GA----------AT---AATTTGGTCAAACACG--GATGAT-T---TT-ATGGAAA--CCTACGCAGA-AAAT-A-TTT---CTAAGGACGTAAAATATGTT-A-AC-AAG-GGAAGTGCACTT------CTCATAAA-ATCGATATC-TGATGCTGAGAGAGAA---------A-AAGTTCCAGATCAAGA----------------TTGCTGAATGTATTTATT---------TGAATGGCT---CCA--TACATGTGTCTTT-GACGTTC--TACAA-------------ACTCATGATCAAA-GTGAA-TGGGCTCA-TTCTCAGT-G-TGAA-TCAATCGAAATTCAAA-AA--TGAG-AT-ATCTTAACCTGCATTCCAC-TTTCGTAGGAAT-TCAGCGGAAA-TAAAATC--GTGTCTTGATT--TCTAAATTAACTGTTT-ACCCCCCTTTTT-AGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTT---ATTTGTT-GTT-CA-TGAACC-TTTGTGCA-CTGTTGG----------------------------------------G-------------TAT---TTGAAA-----TACCCAACTGAATAACAGTT-GGAT-ATT--T-AAATATCCCACTAG--------------TTGA-A----ACACTACAACAAATAA-CAATGGATGACGTCATCGAAGtttattt
gi|5 : tttcatccttctatactactT-G-C-AAATCA-TCAAAATTAAAA-AAAAGGAATAT-ATTTTAATCTGAATAGCAC-TTTAGTCAGAAT-TTCATAAAAAGTAAAAT--TGTGTCTTAAATAATCTAAAT-AACT-TGT-CCGCCCTGTTTT-AGTCTTTCGAAAAACA-TATTTCTCTTGCAAATTTCTTTTTTATTTGTTTGTTTCA-TGAACCCTTTGTGCA-CTGTTGGAATATTTG--------------AAAT-----------------------------------T---A-----TAACCA-CGGATTAACAGTT-GGATTATT--TCAAATATCCCA-TACGATTCATTG-ATAGTGGA-ATTTAACAATACAACAAATAGGCAATGGATGACGTCATCGAAGtttttta
gi|6 : ctttcacgttctactaaacaaatgtgaaactgcttactaaaaccttctcttcctttttcgcgagcaatAAAAT---CCC-CATGAT--GAACCCCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAAGCTTAAAACACAATAGCATAAATTCCATT--CATATATCCAACAGTA----GCTTTAC-ACAATA--GCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGAAGCT-AACACCGTTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGCT---GTAGATAACCCAAAAGTC--AGATGCCATCGATAGT--GAATTGAAAGA-TATT---------------GAATAA-GAAA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---ACAAG-TA--Gtt
gi|7 : aC---ATA-TA-CTTTG-ACTGATCATATGCATTTT-TGATAGAGAG-AATTTTTTT--TATTCAAAACT-T--TAGAAAACTCAAAACG-T-AGATGACATCGATAGT--GTTTTGAATGA-TATTTA-------------GAATTTAGAAGCTGACCGAAAAAATAAAAC-CCTTCGGGAATTATATGA-CTTGGAATTGGATGTTCTAC--G-CACAGT-GA----------AT---AACTTAGTCAAACACG--GATGAT-T---AGTATGGAAA--C-----------------------CTAAGGGCGTAAAATCTGAT-G-AC-AAG-GAAAATGCACGTTTCATATTCATAGA-ATCTATTTCA-GACGTAGAGAGAGAG---------A-
gi|8 : CATCGATAGC--GTTTTGAATGA-TATTTGGGATTTAGAAGCTGAAC---AAAA------GAAAAAA-AAA-T-CA---AGAAATT-T-GGA-CTTGGAATTGGATAT---AC--G-TA--GT-GATGTTCCTTAGATAAAAACTTAGTCAAACACA--GATGAT-T---ATTATGGAAA--CCTACGCGGATAA-T-A-ATT---CCAAGG--GTGAAA-ATG-T-G-AC-AAG-GAAAA------T------TTCATAGA-ATATATg
gi|9 : aAAAAT---CCC---TGGT--GA-CATCAAGA-AAAA---C-CTTGA--GCCTTCAAT-AAAACCCAA-CTTTGTAA------AACACAATAGCA-AAATTTCATT--C--ATATCCAGCAGTT--TAAAATTA--AC-ATATAGCCGAACCC-AA--CACCCAA-TATCGTACATGGAACAA-GTGCCTTTAACAACAACTGCTGCTCA-CATCATTCCTAACAAAATG-TACCCTCG-AC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATGCATGTTTTGCAAAATCCTTTTATTTTCAGAAAGAAAGTTCATATCGATTNTTGTAAATGCATGTTTTGC
Unaligned ( gi|24 ): TTGCTGAATGTATTTATTTGAATGGCTCCATGCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111 1111 111111 111 11 11 111 1 1 1 1 111 11 1111 22222 222 444444444444444444444444444444444 2222222222 111 1111 11111111 111111 11 6666666666666666666666666666666666666666666666666666666666666666666666 111 11 1 11 5555555555555 11 22222 111 11 11 222 11 11 11111 1 11 33333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 000 555 77 4 3333 4 66 4 55 4 222222 666 99 3 5 000 6 33 5 777 5 11 111 0 0 2 0 0 8 111 6 6 1 6 8 11 8 8 7777 66666 0 888 1 77 1 5 555555555555555555555555555555555 5 5 5 5 5 0 5 888 7777 77 6 5555555555 000 0 777 5 888 3 1111 0 88888888 888 2 0 1 88 4 4 4 2 4 222222 5 00 0 6666666666666666666666666666666666666666666666666666666666666666666666 777 1 33 0 33 5555555555555 2 33 55 0 11111 8 222 8 11 1 8 11 8 8 1 8 8 8 222 0 11 11 33 8 8 8 0 55555 8 6 6 6 66 11111111111111111111111111111111111111111111111111111111111111111111111111111 6 6 99 5 0 22 0 5 77 5
lowQualScore : ... ... .. . .... . .. . .. . ...... ... .. . . ... . .. . ... . .. ... . . . . . . ... . . . . . .. . . .... ..... . ... . .. . . ................................. . . . . . . . ... .... .. . .......... ... . ... . ... . .... . ........ ... . . . .. . . . . . ...... . .. . ...................................................................... ... . .. . .. ............. . .. .. . ..... . ... . .. . . .. . . . . . . ... . .. .. .. . . . . ..... . . . . .. ............................................................................. . . .. . . .. . . .. .
lowQualScore : 000 000 99 4 9999 4 11 4 99 4 888888 555 22 2 7 000 0 00 6 222 0 00 000 0 0 5 0 0 8 777 7 7 0 7 0 00 0 0 4444 55555 3 888 0 99 0 7 777777777777777777777777777777777 7 7 7 7 7 7 7 888 2222 99 7 0000000000 000 4 111 0 888 2 9999 2 11111111 888 0 4 7 11 4 4 4 0 7 888888 0 99 7 4444444444444444444444444444444444444444444444444444444444444444444444 555 0 88 0 88 0000000000000 0 22 88 8 55555 0 444 0 66 4 0 00 0 0 4 0 0 0 000 8 00 66 00 0 0 0 8 66666 0 0 7 7 55 22222222222222222222222222222222222222222222222222222222222222222222222222222 7 7 22 7 7 99 7 7 99 0
consensus : AAAAT---CCC-CGTGAT--GAACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTCCATT--CATATATCCAACAGTA--TAGCTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCACACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGCT-T-GTAGATAACTCAAAACTC-TAGATGNCATCGATAGT--GATTTGAANGA-TATT---------------GAAT---GAAA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---AC--G-TA--GT-GA----------AT---AACTTGGTCAAACACG--GATGAT-T---TTTATGGAAA--CCTACGCAGA-AA-T-A-ATT---CTAAGGACGTAAAATATGA-TG-A-CAAG-GAAAATGCACGT------TTCATAGA-ATCTATTTCCTGACGTTGAGAGAGAA---------A-AA-------------A----------------TTGCTG----------TT---------TAAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCACGATC-AAAGTGAATGGGTTCG-T-CTCAG-TG-C-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAACCTGCATTCCA-CTTTCGTAAGAAT-TTAATGGAAA-TAAAATC-TGTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CTTTTTTAGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTT---ATTTGTT-GTTT-ATGAACC-TTTGTGC-ACTGTTGGAGTATTTG--------------AAATAT-C------C-ACTG-------------AAT---TTGAA-----ATATCCAACTGGTTAACAG-TTGGAT-AT--TTAAAATATCCCACTAGTATTCATTGAATAGTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAG
Reference ( family-1705 ) : AAAAT---CCC-CGTGAT--GAACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTCCATT--CATATATCCAACAGTA--TAGCTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCACACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGCT-T-GTAGATAACTCAAAACTC-TAGATGNCATCGATAGT--GATTTGAANGA-TATT---------------GAAT---GAAA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---AC--G-TA--GT-GA----------AT---AACTTGGTCAAACACG--GATGAT-T---TTTATGGAAA--CCTACGCAGA-AA-T-A-ATT---CTAAGGACGTAAAATATGA-TG-A-CAAG-GAAAATGCACGT------TTCATAGA-ATCTATTTCCTGACGTTGAGAGAGAA---------A-AA-------------A----------------TTGCTG----------TT---------TAAATG---GNTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCACGATC-AAAGTGAATGGGTTCG-T-CTCAG-TG-C-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAACCTGCATTCCA-CTTTCGTAAGAAT-TTAATGGAAA-TAAAATC-TGTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CTTTTTTAGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTT---ATTTGTT-GTTT-ATGAACC-TTTGTGC-ACTGTTGGAGTATTTG--------------AAATAT-C------C-ACTG-------------AAT---TTGAA-----ATATCCAACTGGTTAACAG-TTGGAT-AT--TTAAAATATCCCACTAGTATTCATTGAATAGTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAG
gi|1 : AAAAT---TCC-CA-GATTGAAACCTCAAGG-ACA----CTACTGAAGGCCTTCTATTATA-CCTAAACTTTGT---------------T----TAAA----------ATATA-CCAATAACA--TACATTTACCACAATTTAGACTAACCCGAAAACACCC-CATATCATACATGG-ACTGCGTGC--TT-ACAA-AACAGCTGCT-ACACCATTTCCTAC---ATGGTA-A-TCGCACCGA-CTCACA--TTGCGTGATGCGGAGGATTTTCT-----ATTAAAAGCT---GTAGATAACACAAAACTC--AGATGTCATCGATAGTTTGATTTGAAAAAATACT---------------GAA------AA------TGAAATA-AAAAC-CAT-CAGAAATT-T-TCAACTTGGAATTG--------AC--AATA--GTTGA----------AT---AATTTGGT-AAACA----GATGAT-T---TTTATGGAAA----TGCGCAGA-AA-----ATTTTGCTAAGGACGTAAAATATGA-TATACCAAGAGAAAAT-C-CTT------TTCATAAACATCTATTTGCTGAT-TCGAGAGAGAA---------A-AA-------------AAATCCAGGATCAAAATTTGC-----------------------TAAATGTATTTTCCAATCACATGTGTCTTGAGACGTTAGATACAA-------------ACTCATGATCAAAAGTGAA--------------------C-AA-TC-----AAATTTAAAGAA--GGAG-ATCATCTTAACCTGCATTTCACCTTTCGTAAGAAT-TCAATGGAAA-TAAAATC-TG-GTCTTGATT--TCTAAATTAAACGTTTTACCCCTTTTTTTTAGTCTTTTGAAAA-TACTATTACTCATGCAAATGT-TTC---A-TTGTT-GTTTAATGAACC-TCTGTGCAACT-TTGGAGAATTTGGAAAACTTCCGTCTAAATAA-CTGTTAGC-AGTG-------------AATATCTTGGAACTATATATTCCACAGG---ACGGTTTGGAT-ATTCTTAAAATATCCCACTAGT-TTCATTGAATAGTTGAGAAT--ACACTACAACAAATAA-
gi|10 : aaaC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGC--T-GTAGATAACCCAAAAGTC--AGATGCCATCGATAGT--GAATTGAAAGA-TATT---------------GAATAA-GAAA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---AC--tgagagtatcaaagtttttttt
gi|11 : ----------AT---GACTTGGTCAAACACACAGATGGT-A---TT-ATGAAAA--CACAGACAGA-CA-TTA-ATG---ATAAAGCCGCACAATCTCA-GG-A-AAAG-GAAAATGCTCAT------TTCACAGA-A-CTA-TCCCTGACTTTGAGCGAGAA---------A-GA-------------C----------------TT
gi|12 : TGAAAA-TA-TATTACTCATGCAAATGTCTTC---ATTTGTT-GTTT-ATGAACC-TTTGTGC-ACTGTTGG-GAATTTG--------------AAATATCC------C-ACTA-------------AAT-------------------AACT-GT--ACAG-TTGAAT-AT--TTGAAATATTCCACtccagatc
gi|13 : AAAATATTCCC-CGTGAT--GAACCTCAAGGGACA----C-ACTGA--GCCTTTCAT-AAT-TCCAA-CATTGTAA------AACACAATAGCATAAGT---ATG--CA-------------A--TAGC----------------CTAACCCCAA--CACCC-C-TATCATATATag
gi|14 : ATCTGG-TG-A-AAAG-GAAAATGCACGT------TTCGCAGA-ATCTATTT-CTGACGTTGAGAAAGAA---------AGAA-------------A----------------TT
gi|15 : ACACT--GAT-AT-TCTATTTACAGAAAAGCGTATGCAGATAA-T-A-ATT---CTAAGGACGTAA--------TG-A-AAAG-GAAAATGCACGT------TTCGTAGccagatcgatcagcatgttttgctattcattatcgctctgcgggt
gi|16 : aaattttatttcAATCCCAAAG-ACAGATGC-ATTGA--TCCTTTCAT-ATG-TACAA-CTGTGCAA------AACACAGAAGCATAAAGTCCATTCACATATACCCAACAGTA--
gi|17 : ATATCCAAGTAGTATTAATTTAATAGTTGA-AAT--ACACTACAACAAAGAA-CAATGGGTGACGTTATTGAAG
gi|19 : TAATATTGATTGAATAATTAA-AAT--ACACAACAGCAAATAA-CAATGTATGAAGTCATTAAActtt
gi|2 : gAAAAT---TCCACATGAT--GCACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTTCATT--CATATATCCAACAATACTTAGCTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCACACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACA--TTGC-TGATGCGGAT-ATTTTTTT--TTATTAAAAGCTGTAGTAGATAACTCAAAACTCTTAAATGTCATCGATAGT--GATTTGAAAGA-TATT---------------GAAT-----AA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTCCAATTGGATGT---AC--G-TA--GT-GA----------A----AATTTGGTCAAACACG--GATGATAT---TTTATGGAAA--CCTACGCAGA-AA-T-ATATT---CTAAGGACGTAATATATGATTG-A-CAAG-GAAAATGCACTT------TTCATAAA-ATCTATTTCTTGATGCTGAGAGAGAA---------A-AA-------------A----------------TTG-------------------------AAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCGTGATC--AAGTGAATGGGTTCA-T-CTCAGTTG-T-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAAGCTGCATTCCA-CTTTCGTAAGAAT-TTAGTGGAAA-TAAAATTGTGTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CTTTTTTAGTCTTTTGAAAA-TA-TATTAC-CATGCAAATGTCTTT---A-TTGTT--TTT-AT-AACC-TTTGTGC-ACTGTTGG-GTATTTG--------------ACATATCC------C-ACTG-------------AAT---TTGAA-----ATATCCCACTGGTTAACAG-TTGGAT-AT--TTAAAATATCCCACTAGTATTCATTAGATAGTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAGttttcttt
gi|20 : ---CCC-TCTGAT--GAACCTCAAGG-ACA----C-ATTGA--GTCTTTCAT-ATA-TCCAA-CTGTGTAA------AACACAAT
gi|21 : cACCTCAAGG-ACA----C-TCTGA--GCCTTTCAT-ATA-CCTAA-CTTTGTAA------AATACCATAACATAACTT
gi|22 : AAAAT---CCC-TCTGAT--GAACCTTAAGG-ACA----C-ATTGA--TCCTTTCAT-ATA---CA-------TAT------AACACAATA
gi|23 : tACAAATAA-CATTGGATGACGTCATTAAAG
gi|3 : AAAGCT-T--TAGAGAACTTAAAACT--TAGATTACATCGATAAT--GATTTCATTGA-TATT---------------GAAT---GAGA-------AAGAAA-AAAACACAT-CAGGAATT-T-TGA-CTTGCAATTAGATAT---AC--G-TA--GA-GA----------AT---AAATTGGTCAAACACG--GATGAT-T---TTTATGGAAA--ACTATGCAGGCAA-T-A-ATT---CGAACGACGTAAAATATTA-TG-A-CAAG-GAAAATGCACAA------TTCATGAA-ATATATTT-CTGACGTTGGGAGAGGATTCCAGATCA-AG-------------A----------------TTACTA----------TTGTGTTTATATAAAGG---GATACA--TGCATATGTCTTT-GAAGTT--CTACAAATGTGAAACTTCTACTCACAATC-AAAGTGAATTGGTTTGTT-CTCAG-TGCC-AA-TCTATCAAAATTCAAA-AT--GGAG-AT-TTATTAATCTTAATTCAA-CTTTAGTAAAAACATTAATGGAAG-TTACAT--TGTATCTTAATT--TCTAAA-TAACTT-TTAACCCC-CGTTTttttctaacctca
gi|3 : -TTTGTGC-ACTGTTAGA-TATTTC--------------AGATAT-CA-----A-ACTGAATAACAGTTGTAAAT---TTGAA-----ATATCAAACTGGATAGCAG-TTGTGT-AT--TTAATATACCCCACTAGTATTCATTGAATAGTTGA-GAT--ACACTACAACAAATAA-CAATGGATGACGTCATCAAAGgtgcactgttagatatttcagatatcaaactgaataacagttgtaaatttgaaatatcaaactggatagcagttgtgtatttaatataccccactagtattcattgaatagttgagatacactacaacaaataacaatggatgacgtcatcaaagtttattt
gi|4 : aaagctttagagaacttaaaacttagattacatcgataatgatttcattgatattgaatgagaaagaaaaaaacacatcaggaattttgacttgcaattagatatacgtagagaataaattggtcaaacacggatgatttttatggaaaactatgcaggcaataattcgaacgacgtaaaatattatgacaaggaaaatgcacaattcatgaaatatatttctgacgttgggagaggattccagatcaagattactattgtgtttatataaagggatacatgcatatgtctttgaagttctacaaatgtgaaacttctactcacaatcaaagtgaattggtttgttctcagtgccaatctatcaaaattcaaaatggagatttattaatcttaattcaactttagtaaaaacattaatggaagttacattgtatcttaatttctaaataacttttaacccccgTGT---AC--A-TA--GT-GA----------AT---AATTTGGTCAAACACG--GATGAT-T---TT-ATGGAAA--CCTACGCAGA-AAAT-A-TTT---CTAAGGACGTAAAATATGT-TA-A-CAAG-GGAAGTGCACTT------CTCATAAA-ATCGATATC-TGATGCTGAGAGAGAA---------A-AAGTTCCAGATCAAGA----------------TTGCTGAATGTATTTATT---------TGAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCATGATC-AAAGTGAATGGGCTCA-TTCTCAG-TG-TGAA-TCAATCGAAATTCAAA-AA--TGAG-AT-ATCTTAACCTGCATTCCA-CTTTCGTAGGAAT-TCAGCGGAAA-TAAAATC--GTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CCTTTTTAGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTT---ATTTGTT-GTTC-ATGAACC-TTTGTGC-ACTGTTGG-GTATTTG--------------AAATAC-C------CAACTG-------------AA---------------------------TAACAG-TTGGAT-AT--TT-AAATATCCCACTAG------TTGAA-------------ACACTACAACAAATAA-CAATGGATGACGTCATCGAAGtttattt
gi|5 : tttcatccttctatactact-TG-C-AAATCA-TCAAAATTAAAA-AAAAGGAATAT-ATTTTAATCTGAATAGCA-CTTTAGTCAGAAT-TTCATAAAAAGTAAAAT--TGTGTCTTAAATAATCTAAAT-AACT--TGTCCGCC-CTGTTTTAGTCTTTCGAAAAACA-TATTTCTCTTGCAAATTTCTTTTTTATTTGTTTGTTTCATGAACCCTTTGTGC-ACTGTTGGAATATTTG--------------AAAT------------------------------------T--------ATAACCA-CGGATTAACAG-TTGGATTAT--TTCAAATATCCCA-TACGATTCATTGA-TAGTGGA-ATTTAACAATACAACAAATAGGCAATGGATGACGTCATCGAAGtttttta
gi|6 : ctttcacgttctactaaacaaatgtgaaactgcttactaaaaccttctcttcctttttcgcgagcaatAAAAT---CCC-CATGAT--GAACCCCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAAGCTTAAAACACAATAGCATAAATTCCATT--CATATATCCAACAGTA----GCTTTAC-ACAATA--GCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGAAGCTAACACCGTTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGC--T-GTAGATAACCCAAAAGTC--AGATGCCATCGATAGT--GAATTGAAAGA-TATT---------------GAATAA-GAAA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---ACAAG-TA--Gtt
gi|7 : aC---ATA-TA-CTTTG-ACTGATCATATGCATTTT-TGATAGAGAG-AATTTTTTT--TATTCAAAACT-T--TAGAAAACTCAAAACG--TAGATGACATCGATAGT--GTTTTGAATGA-TATTTA-------------GAATTTAGAAGCTGACCGAAAAAATAAAAC-CCTTCGGGAATTATATGA-CTTGGAATTGGATGTTCTAC--G-CACAGT-GA----------AT---AACTTAGTCAAACACG--GATGAT-T---AGTATGGAAA--C-----------------------CTAAGGGCGTAAAATCTGA-TG-A-CAAG-GAAAATGCACGTTTCATATTCATAGA-ATCTATTTCA-GACGTAGAGAGAGAG---------A-
gi|8 : CATCGATAGC--GTTTTGAATGA-TATTTGGGATTTAGAAGCTGAAC---AAAA------GAAAAAA-AAA-T-CA---AGAAATT-T-GGA-CTTGGAATTGGATAT---AC--G-TA--GT-GATGTTCCTTAGATAAAAACTTAGTCAAACACA--GATGAT-T---ATTATGGAAA--CCTACGCGGATAA-T-A-ATT---CCAAGG--GTGAAA-ATG--TG-A-CAAG-GAAAA------T------TTCATAGA-ATATATg
gi|9 : aAAAAT---CCC---TGGT--GA-CATCAAGA-AAAA---C-CTTGA--GCCTTCAAT-AAAACCCAA-CTTTGTAA------AACACAATAGCA-AAATTTCATT--C--ATATCCAGCAGTT--TAAAATTA--AC-ATATAGCCGAACCC-AA--CACCCAA-TATCGTACATGGAACAA-GTGCCTTTAACAACAACTGCTGCTCACATCATTCCTAACAAAATG-TACCCTCG-AC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATGCATGTTTTGCAAAATCCTTTTATTTTCAGAAAGAAAGTTCATATCGATTNTTGTAAATGCATGTTTTGC
Unaligned ( gi|24 ): TTGCTGAATGTATTTATTTGAATGGCTCCATGCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111 1111 111111 111 11 11 111 1 1 1 1 111 11 1111 22222 222 444444444444444444444444444444444 2222222222 111 1111 11111111 111111 11 6666666666666666666666666666666666666666666666666666666666666666666666 111 11 1 11 5555555555555 11 22222 111 11 11 222 11 11 11111 1 11 33333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 000 555 77 4 3333 4 66 4 55 4 222222 666 99 3 5 000 6 33 5 777 5 11 111 0 0 2 0 0 8 111 6 6 1 6 8 11 8 8 7777 66666 0 888 1 77 1 5 555555555555555555555555555555555 5 5 5 5 5 0 5 888 7777 77 6 5555555555 000 0 777 5 888 3 1111 0 88888888 888 2 0 1 88 4 4 4 2 4 222222 5 00 0 6666666666666666666666666666666666666666666666666666666666666666666666 777 0 33 0 33 5555555555555 2 33 55 0 11111 8 222 8 11 1 8 11 8 8 1 8 8 8 222 0 11 11 33 8 8 8 0 55555 8 6 6 6 66 11111111111111111111111111111111111111111111111111111111111111111111111111111 6 6 99 5 0 22 0 5 77 5
lowQualScore : ... ... .. . .... . .. . .. . ...... ... .. . . ... . .. . ... . .. ... . . . . . . ... . . . . . .. . . .... ..... . ... . .. . . ................................. . . . . . . . ... .... .. . .......... ... . ... . ... . .... . ........ ... . . . .. . . . . . ...... . .. . ...................................................................... ... . .. . .. ............. . .. .. . ..... . ... . .. . . .. . . . . . . ... . .. .. .. . . . . ..... . . . . .. ............................................................................. . . .. . . .. . . .. .
lowQualScore : 000 000 99 4 9999 4 11 4 99 4 888888 555 22 2 7 000 0 00 6 222 0 00 000 0 0 5 0 0 8 777 7 7 0 7 0 00 0 0 4444 55555 3 888 0 99 0 7 777777777777777777777777777777777 7 7 7 7 7 7 7 888 2222 99 7 0000000000 000 4 111 0 888 2 9999 2 11111111 888 0 4 7 11 4 4 4 0 7 888888 0 99 7 4444444444444444444444444444444444444444444444444444444444444444444444 555 2 88 0 88 0000000000000 0 22 88 8 55555 0 444 0 66 4 0 00 0 0 4 0 0 0 000 8 00 66 00 0 0 0 8 66666 0 0 7 7 55 22222222222222222222222222222222222222222222222222222222222222222222222222222 7 7 22 7 7 99 7 7 99 0
consensus : AAAAT---CCC-CGTGAT--GAACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTCCATT--CATATATCCAACAGTA--TAGCTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCACACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGCT-T-GTAGATAACTCAAAACTC-TAGATGNCATCGATAGT--GATTTGAANGA-TATT---------------GAAT---GAAA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---AC--G-TA--GT-GA----------AT---AACTTGGTCAAACACG--GATGAT-T---TTTATGGAAA--CCTACGCAGA-AA-T-A-ATT---CTAAGGACGTAAAATATGA-TG-A-CAAG-GAAAATGCACGT------TTCATAGA-ATCTATTTCCTGACGTTGAGAGAGAA---------A-AA-------------A----------------TTGCTG----------TT---------TAAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCACGATC-AAAGTGAATGGGTTCG-T-CTCAG-TG-C-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAACCTGCATTCCA-CTTTCGTAAGAAT-TTAATGGAAA-TAAAATC-TGTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CTTTTTTAGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTT---ATTTGTT-GTTT-ATGAACC-TTTGTGC-ACTGTTGGAGTATTTG--------------AAATAT-C------C-ACTG-------------AAT---TTGAA-----ATATCCAACTGGTTAACAG-TTGGAT-AT--TTAAAATATCCCACTAGTATTCATTGAATAGTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAG
Reference ( family-1705 ) : AAAAT---CCC-CGTGAT--GAACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTCCATT--CATATATCCAACAGTA--TAGCTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCACACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGCT-T-GTAGATAACTCAAAACTC-TAGATGNCATCGATAGT--GATTTGAANGA-TATT---------------GAAT---GAAA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---AC--G-TA--GT-GA----------AT---AACTTGGTCAAACACG--GATGAT-T---TTTATGGAAA--CCTACGCAGA-AA-T-A-ATT---CTAAGGACGTAAAATATGA-TG-A-CAAG-GAAAATGCACGT------TTCATAGA-ATCTATTTCCTGACGTTGAGAGAGAA---------A-AA-------------A----------------TTGCTG----------TT---------TAAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCACGATC-AAAGTGAATGGGTTCG-T-CTCAG-TG-C-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAACCTGCATTCCA-CTTTCGTAAGAAT-TTAATGGAAA-TAAAATC-TGTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CTTTTTTAGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTT---ATTTGTT-GTTT-ATGAACC-TTTGTGC-ACTGTTGGAGTATTTG--------------AAATAT-C------C-ACTG-------------AAT---TTGAA-----ATATCCAACTGGTTAACAG-TTGGAT-AT--TTAAAATATCCCACTAGTATTCATTGAATAGTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAG
gi|1 : AAAAT---TCC-CA-GATTGAAACCTCAAGG-ACA----CTACTGAAGGCCTTCTATTATA-CCTAAACTTTGT---------------T----TAAA----------ATATA-CCAATAACA--TACATTTACCACAATTTAGACTAACCCGAAAACACCC-CATATCATACATGG-ACTGCGTGC--TT-ACAA-AACAGCTGCT-ACACCATTTCCTAC---ATGGTA-A-TCGCACCGA-CTCACA--TTGCGTGATGCGGAGGATTTTCT-----ATTAAAAGCT---GTAGATAACACAAAACTC--AGATGTCATCGATAGTTTGATTTGAAAAAATACT---------------GAA------AA------TGAAATA-AAAAC-CAT-CAGAAATT-T-TCAACTTGGAATTG--------AC--AATA--GTTGA----------AT---AATTTGGT-AAACA----GATGAT-T---TTTATGGAAA----TGCGCAGA-AA-----ATTTTGCTAAGGACGTAAAATATGA-TATACCAAGAGAAAAT-C-CTT------TTCATAAACATCTATTTGCTGAT-TCGAGAGAGAA---------A-AA-------------AAATCCAGGATCAAAATTTGC-----------------------TAAATGTATTTTCCAATCACATGTGTCTTGAGACGTTAGATACAA-------------ACTCATGATCAAAAGTGAA--------------------C-AA-TC-----AAATTTAAAGAA--GGAG-ATCATCTTAACCTGCATTTCACCTTTCGTAAGAAT-TCAATGGAAA-TAAAATC-TG-GTCTTGATT--TCTAAATTAAACGTTTTACCCCTTTTTTTTAGTCTTTTGAAAA-TACTATTACTCATGCAAATGT-TTC---A-TTGTT-GTTTAATGAACC-TCTGTGCAACT-TTGGAGAATTTGGAAAACTTCCGTCTAAATAA-CTGTTAGC-AGTG-------------AATATCTTGGAACTATATATTCCACAGG---ACGGTTTGGAT-ATTCTTAAAATATCCCACTAGT-TTCATTGAATAGTTGAGAAT--ACACTACAACAAATAA-
gi|10 : aaaC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGC--T-GTAGATAACCCAAAAGTC--AGATGCCATCGATAGT--GAATTGAAAGA-TATT---------------GAATAA-GAAA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---AC--tgagagtatcaaagtttttttt
gi|11 : ----------AT---GACTTGGTCAAACACACAGATGGT-A---TT-ATGAAAA--CACAGACAGA-CA-TTA-ATG---ATAAAGCCGCACAATCTCA-GG-A-AAAG-GAAAATGCTCAT------TTCACAGA-A-CTA-TCCCTGACTTTGAGCGAGAA---------A-GA-------------C----------------TT
gi|12 : TGAAAA-TA-TATTACTCATGCAAATGTCTTC---ATTTGTT-GTTT-ATGAACC-TTTGTGC-ACTGTTGG-GAATTTG--------------AAATATCC------C-ACTA-------------AAT-------------------AACT-GT--ACAG-TTGAAT-AT--TTGAAATATTCCACtccagatc
gi|13 : AAAATATTCCC-CGTGAT--GAACCTCAAGGGACA----C-ACTGA--GCCTTTCAT-AAT-TCCAA-CATTGTAA------AACACAATAGCATAAGT---ATG--CA-------------A--TAGC----------------CTAACCCCAA--CACCC-C-TATCATATATag
gi|14 : ATCTGG-TG-A-AAAG-GAAAATGCACGT------TTCGCAGA-ATCTATTT-CTGACGTTGAGAAAGAA---------AGAA-------------A----------------TT
gi|15 : ACACT--GAT-AT-TCTATTTACAGAAAAGCGTATGCAGATAA-T-A-ATT---CTAAGGACGTAA--------TG-A-AAAG-GAAAATGCACGT------TTCGTAGccagatcgatcagcatgttttgctattcattatcgctctgcgggt
gi|16 : aaattttatttcAATCCCAAAG-ACAGATGC-ATTGA--TCCTTTCAT-ATG-TACAA-CTGTGCAA------AACACAGAAGCATAAAGTCCATTCACATATACCCAACAGTA--
gi|17 : ATATCCAAGTAGTATTAATTTAATAGTTGA-AAT--ACACTACAACAAAGAA-CAATGGGTGACGTTATTGAAG
gi|19 : TAATATTGATTGAATAATTAA-AAT--ACACAACAGCAAATAA-CAATGTATGAAGTCATTAAActtt
gi|2 : gAAAAT---TCCACATGAT--GCACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTTCATT--CATATATCCAACAATACTTAGCTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCACACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACA--TTGC-TGATGCGGAT-ATTTTTTT--TTATTAAAAGCTGTAGTAGATAACTCAAAACTCTTAAATGTCATCGATAGT--GATTTGAAAGA-TATT---------------GAAT-----AA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTCCAATTGGATGT---AC--G-TA--GT-GA----------A----AATTTGGTCAAACACG--GATGATAT---TTTATGGAAA--CCTACGCAGA-AA-T-ATATT---CTAAGGACGTAATATATGATTG-A-CAAG-GAAAATGCACTT------TTCATAAA-ATCTATTTCTTGATGCTGAGAGAGAA---------A-AA-------------A----------------TTG-------------------------AAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCGTGATC--AAGTGAATGGGTTCA-T-CTCAGTTG-T-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAAGCTGCATTCCA-CTTTCGTAAGAAT-TTAGTGGAAA-TAAAATTGTGTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CTTTTTTAGTCTTTTGAAAA-TA-TATTAC-CATGCAAATGTCTTT---A-TTGTT--TTT-AT-AACC-TTTGTGC-ACTGTTGG-GTATTTG--------------ACATATCC------C-ACTG-------------AAT---TTGAA-----ATATCCCACTGGTTAACAG-TTGGAT-AT--TTAAAATATCCCACTAGTATTCATTAGATAGTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAGttttcttt
gi|20 : ---CCC-TCTGAT--GAACCTCAAGG-ACA----C-ATTGA--GTCTTTCAT-ATA-TCCAA-CTGTGTAA------AACACAAT
gi|21 : cACCTCAAGG-ACA----C-TCTGA--GCCTTTCAT-ATA-CCTAA-CTTTGTAA------AATACCATAACATAACTT
gi|22 : AAAAT---CCC-TCTGAT--GAACCTTAAGG-ACA----C-ATTGA--TCCTTTCAT-ATA---CA-------TAT------AACACAATA
gi|23 : tACAAATAA-CATTGGATGACGTCATTAAAG
gi|3 : AAAGCT-T--TAGAGAACTTAAAACT--TAGATTACATCGATAAT--GATTTCATTGA-TATT---------------GAAT---GAGA-------AAGAAA-AAAACACAT-CAGGAATT-T-TGA-CTTGCAATTAGATAT---AC--G-TA--GA-GA----------AT---AAATTGGTCAAACACG--GATGAT-T---TTTATGGAAA--ACTATGCAGGCAA-T-A-ATT---CGAACGACGTAAAATATTA-TG-A-CAAG-GAAAATGCACAA------TTCATGAA-ATATATTT-CTGACGTTGGGAGAGGATTCCAGATCA-AG-------------A----------------TTACTA----------TTGTGTTTATATAAAGG---GATACA--TGCATATGTCTTT-GAAGTT--CTACAAATGTGAAACTTCTACTCACAATC-AAAGTGAATTGGTTTGTT-CTCAG-TGCC-AA-TCTATCAAAATTCAAA-AT--GGAG-AT-TTATTAATCTTAATTCAA-CTTTAGTAAAAACATTAATGGAAG-TTACAT--TGTATCTTAATT--TCTAAA-TAACTT-TTAACCCC-CGTTTttttctaacctca
gi|3 : -TTTGTGC-ACTGTTAGA-TATTTC--------------AGATAT-CA-----A-ACTGAATAACAGTTGTAAAT---TTGAA-----ATATCAAACTGGATAGCAG-TTGTGT-AT--TTAATATACCCCACTAGTATTCATTGAATAGTTGA-GAT--ACACTACAACAAATAA-CAATGGATGACGTCATCAAAGgtgcactgttagatatttcagatatcaaactgaataacagttgtaaatttgaaatatcaaactggatagcagttgtgtatttaatataccccactagtattcattgaatagttgagatacactacaacaaataacaatggatgacgtcatcaaagtttattt
gi|4 : aaagctttagagaacttaaaacttagattacatcgataatgatttcattgatattgaatgagaaagaaaaaaacacatcaggaattttgacttgcaattagatatacgtagagaataaattggtcaaacacggatgatttttatggaaaactatgcaggcaataattcgaacgacgtaaaatattatgacaaggaaaatgcacaattcatgaaatatatttctgacgttgggagaggattccagatcaagattactattgtgtttatataaagggatacatgcatatgtctttgaagttctacaaatgtgaaacttctactcacaatcaaagtgaattggtttgttctcagtgccaatctatcaaaattcaaaatggagatttattaatcttaattcaactttagtaaaaacattaatggaagttacattgtatcttaatttctaaataacttttaacccccgTGT---AC--A-TA--GT-GA----------AT---AATTTGGTCAAACACG--GATGAT-T---TT-ATGGAAA--CCTACGCAGA-AAAT-A-TTT---CTAAGGACGTAAAATATGT-TA-A-CAAG-GGAAGTGCACTT------CTCATAAA-ATCGATATC-TGATGCTGAGAGAGAA---------A-AAGTTCCAGATCAAGA----------------TTGCTGAATGTATTTATT---------TGAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCATGATC-AAAGTGAATGGGCTCA-TTCTCAG-TG-TGAA-TCAATCGAAATTCAAA-AA--TGAG-AT-ATCTTAACCTGCATTCCA-CTTTCGTAGGAAT-TCAGCGGAAA-TAAAATC--GTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CCTTTTTAGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTT---ATTTGTT-GTTC-ATGAACC-TTTGTGC-ACTGTTGG-GTATTTG--------------AAATAC-C------CAACTG-------------AA---------------------------TAACAG-TTGGAT-AT--TT-AAATATCCCACTAG------TTGAA-------------ACACTACAACAAATAA-CAATGGATGACGTCATCGAAGtttattt
gi|5 : tttcatccttctatactact-TG-C-AAATCA-TCAAAATTAAAA-AAAAGGAATAT-ATTTTAATCTGAATAGCA-CTTTAGTCAGAAT-TTCATAAAAAGTAAAAT--TGTGTCTTAAATAATCTAAAT-AACT--TGTCCGCC-CTGTTTTAGTCTTTCGAAAAACA-TATTTCTCTTGCAAATTTCTTTTTTATTTGTTTGTTTCATGAACCCTTTGTGC-ACTGTTGGAATATTTG--------------AAAT------------------------------------T--------ATAACCA-CGGATTAACAG-TTGGATTAT--TTCAAATATCCCA-TACGATTCATTGA-TAGTGGA-ATTTAACAATACAACAAATAGGCAATGGATGACGTCATCGAAGtttttta
gi|6 : ctttcacgttctactaaacaaatgtgaaactgcttactaaaaccttctcttcctttttcgcgagcaatAAAAT---CCC-CATGAT--GAACCCCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAAGCTTAAAACACAATAGCATAAATTCCATT--CATATATCCAACAGTA----GCTTTAC-ACAATA--GCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGAAGCTAACACCGTTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGC--T-GTAGATAACCCAAAAGTC--AGATGCCATCGATAGT--GAATTGAAAGA-TATT---------------GAATAA-GAAA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---ACAAG-TA--Gtt
gi|7 : aC---ATA-TA-CTTTG-ACTGATCATATGCATTTT-TGATAGAGAG-AATTTTTTT--TATTCAAAACT-T--TAGAAAACTCAAAACG--TAGATGACATCGATAGT--GTTTTGAATGA-TATTTA-------------GAATTTAGAAGCTGACCGAAAAAATAAAAC-CCTTCGGGAATTATATGA-CTTGGAATTGGATGTTCTAC--G-CACAGT-GA----------AT---AACTTAGTCAAACACG--GATGAT-T---AGTATGGAAA--C-----------------------CTAAGGGCGTAAAATCTGA-TG-A-CAAG-GAAAATGCACGTTTCATATTCATAGA-ATCTATTTCA-GACGTAGAGAGAGAG---------A-
gi|8 : CATCGATAGC--GTTTTGAATGA-TATTTGGGATTTAGAAGCTGAAC---AAAA------GAAAAAA-AAA-T-CA---AGAAATT-T-GGA-CTTGGAATTGGATAT---AC--G-TA--GT-GATGTTCCTTAGATAAAAACTTAGTCAAACACA--GATGAT-T---ATTATGGAAA--CCTACGCGGATAA-T-A-ATT---CCAAGG--GTGAAA-ATG--TG-A-CAAG-GAAAA------T------TTCATAGA-ATATATg
gi|9 : aAAAAT---CCC---TGGT--GA-CATCAAGA-AAAA---C-CTTGA--GCCTTCAAT-AAAACCCAA-CTTTGTAA------AACACAATAGCA-AAATTTCATT--C--ATATCCAGCAGTT--TAAAATTA--AC-ATATAGCCGAACCC-AA--CACCCAA-TATCGTACATGGAACAA-GTGCCTTTAACAACAACTGCTGCTCACATCATTCCTAACAAAATG-TACCCTCG-AC
blockSeqs : ATT ACA . G GATG . . . AC . GCTTAA GTC CA T C CTT T C A ATA C . AA A . C A C C AAA . C C . T CA . . TTAT TGTAG CTT C . A . TGGGATTTAGAAGCTGAACAAAAG T A T A A . TCT AAG CA . TGTTCCTTAG AAA ACA A CTA T AGCG CATTA . C C AT . . . T A TTCATA . CC AAAGTTCCAGATCAAGATTGCTGAATGTATTTATT . . . . ATGTGAAACTTCT T A TG TGTT T CC A AA G . AA T . G . A G TGT AA TT G . A . TTTAT T C C . AA AGATATCAAACTGAATAACAGTTGTAAATTTGAAATATCAAACTGGAT . T . G TA . TA G
blockSeqs : . CG . . A . . . T . . TTT . T T T T C A ATA G . C . . C . . A . . . C . . . . . TTAT TG C T . A . TAGAATTTAGAAGCTGACCG . . . . . . . G . . . . T . . T CA TAATA . A C A . . . A G . . CT TTCCAGATCAAGATTACTATTGTGTTTATA . . . . . C A TT CATT . TG . TA A . . . . T . . . T . TT T . . . AT . . . . G ACATATCCCACTGAATTTGAAATATCCCACTGGTT . . . A TA . . .
blockSeqs : . TC . . . . . . T . . TTC . T T T A . . A G . C . . C . . C . . . C . . . . . TT TT T A . T . GAATAAGAAAG . . . . . . . G . . . . G . . T CC AATAT . A A G . . . A G . . CA AAAATTG . . . . . T . TG CAT . T . AA G . . . . C . . . C . T G . . . AT . . . . G AAATATCCCACTAAATAACTGT . . . A TA . . .
blockSeqs : . TC . . . . . . T . . TTT . . T . . . . . . . C . . . T . . . . . TT TG C C . A . GAATAAGAAAG . . . . . . . A . . . . G . . T AC CAATA . A A A . . . A T . . C . C . A A . . . . T . . . T . T . . . . A . . . . A AAATTATAACCACGGATT . . . C TA . . .
blockSeqs : . CA . . . . . . T . . T . . . . . . C . TT T A . T . GAATGAGA . . . . . . . G . . . . G . . T CC AAATA . A A T . . . A A . . C . . G AAATACCCAACTGAAT . . . . GA . . .
blockSeqs : . . . . . . . . C . . . T . GAATAAG . . . . . . . G . . . G . . . CC TAATA . G C A . . . A T . . C . . . .
blockSeqs : . . . . . T . . . A . . . C . . . A . . . . A G . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqCons : ** ** TTC ** ** C** TT** ** TGAATAAGAAAG********************* G*** G** CC** NAATA*** *** C** AA T** G* AT*** G* ** TA
originalCons : AAAAT---CCC-CGTGAT--GAACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTCCATT--CATATATCCAACAGTA--TAGCTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCACACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTATTATTAAAAGCT-T-GTAGATAACTCAAAACTC-TAGATGNCATCGATAGT--GATTTGAANGA-TATT---------------GAAT---GAAA------GAAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---AC--G-TA--GT-GA----------AT---AACTTGGTCAAACACG--GATGAT-T---TTTATGGAAA--CCTACGCAGA-AA-T-A-ATT---CTAAGGACGTAAAATATGA-TG-A-CAAG-GAAAATGCACGT------TTCATAGA-ATCTATTTCCTGACGTTGAGAGAGAA---------A-AA-------------A----------------TTGCTG----------TT---------TAAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCACGATC-AAAGTGAATGGGTTCG-T-CTCAG-TG-C-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAACCTGCATTCCA-CTTTCGTAAGAAT-TTAATGGAAA-TAAAATC-TGTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CTTTTTTAGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTT---ATTTGTT-GTTT-ATGAACC-TTTGTGC-ACTGTTGGAGTATTTG--------------AAATAT-C------C-ACTG-------------AAT---TTGAA-----ATATCCAACTGGTTAACAG-TTGGAT-AT--TTAAAATATCCCACTAGTATTCATTGAATAGTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAG
finalCons : AAAAT---CCC-CGTGAT--GAACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTCCATT--CATATATCCAACAGTA--TAGCTTTA--ACAATATAGCCTAACCCGAA--CACCCC--TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCACACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTT--TATTAAAAGCT-T-GTAGATAACTCAAAACTC-TAGATGNCATCGATAGT--GATTTGAANGA-TATTTGAATAAGAAAG---------------------AAAAAA-AAAAC-CAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---ACG---TA--GT-GA----------AT---AACTTGGTCAAACACG--GATGAT-T---TTTATGGAAACC--TACGCAGANAATA---ATT---CTAAGGACGTAAAATATGA-TG-A-CAAG-GAAAATGCACGT------TTCATAGA-ATCTATTTCCTGACGTTGAGAGAGAA---------A-AA-------------A----------------TTGCTG----------TT---------TAAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCACGATC-AAAGTGAATGGGTTCG-T-CTCAG-TGC--AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAACCTGCATTCCA-CTTTCGTAAGAAT-TTAATGGAAA-TAAAATT--GTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CTTTTTTAGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTTAT---TTGTT-GTTT-ATGAACC-TTTGTGC-ACTGTTGGG-TATTTG--------------AAATAT-C------C-ACTG-------------AAT---TTGAA-----ATATCCAACTGGTTAACAG-TTGGAT-AT--TTAAAATATCCCACTAGTATTCATTGAATAGTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATGCATGTTTTGCAAAATCCTTTTATTTTCAGAAAGAAAGTTCATATCGATTNTTGTAAATGCATGTTTTGC
Unaligned ( gi|24 ): TTGCTGAATGTATTTATTTGAATGGCTCCATGCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111 1111 111111 11111111111 333333333333 11 11 111 1 1 1 1 111 11 111111 2222 222 11 33333333333333 111111 2222222222 111 1111 111111 11 6666666666666666666666666666666666666666666666666666666666666666666666 111 11 1 11 5555555555555 11 22222 111 11 11 11 11 11 11111 1 33333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 000 555 77 4 3333 4 66 4 55 4 222222 22222222222 5 444444444444 0 11 5 11 111 0 0 2 0 0 8 111 6 6 1 6 8 11 8 8 888888 7777 0 888 1 77 1 5 7 77 5 66666666666666 666666 5 5 5 5 0 5 888 7777 77 6 5555555555 000 0 777 5 888 3 1111 0 7 55 2 0 1 55 4 4 4 2 4 222222 5 00 0 6666666666666666666666666666666666666666666666666666666666666666666666 777 0 33 0 33 5555555555555 2 33 55 0 11111 8 222 8 11 1 8 11 8 8 1 8 8 8 99 0 11 11 33 8 8 8 0 55555 8 6 6 6 888 11111111111111111111111111111111111111111111111111111111111111111111111111111 6 6 99 5 0 22 0 5 77 5
lowQualScore : ... ... .. . .... . .. . .. . ...... ........... . ............ . .. . .. ... . . . . . . ... . . . . . .. . . ...... .... . ... . .. . . . .. . .............. ...... . . . . . . ... .... .. . .......... ... . ... . ... . .... . . .. . . . .. . . . . . ...... . .. . ...................................................................... ... . .. . .. ............. . .. .. . ..... . ... . .. . . .. . . . . . . .. . .. .. .. . . . . ..... . . . . ... ............................................................................. . . .. . . .. . . .. .
lowQualScore : 000 000 99 4 9999 4 11 4 99 4 888888 44444444444 7 222222222222 8 66 0 00 000 0 0 5 0 0 8 777 7 7 0 7 0 00 0 0 666666 3333 3 888 0 99 0 7 1 77 7 66666666666666 444444 7 7 7 7 7 7 888 2222 99 7 0000000000 000 4 111 0 888 2 9999 2 6 55 0 1 7 44 4 4 4 0 7 888888 0 99 7 4444444444444444444444444444444444444444444444444444444444444444444444 555 2 88 0 88 0000000000000 0 22 88 8 55555 0 444 0 66 4 0 00 0 0 4 0 0 0 00 8 00 66 00 0 0 0 8 66666 0 0 7 7 777 22222222222222222222222222222222222222222222222222222222222222222222222222222 7 7 22 7 7 99 7 7 99 0
consensus : AAAAT---CCC-CGTGAT--GAACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTCCATT--CATATATCCAACAGTA--TAGCTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCACACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTT--T--TATTAAAAGCT-T-GTAGATAACTCAAAACTC-TAGATGNCATCGATAGT--GATTTGAANGA-TATTT-GA-AT----A-AG------AAA------GAAAAAA-AAAACCAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---AC--G-TA--GT-GA----------AT---AACTTGGTCAAACACG--GATGAT-T---TTTATGGAAA--CCTACGCAGANAATA-ATTCTAAGGACGTAAAATATGA-TG-A-CAAG-GAAAATGCACGT------TTCATAGA-ATCTATTTCCTGACGTTGAGAGAGAA---------A-AA-------------A----------------TTGCTG----------TT---------TAAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCACGATC-AAAGTGAATGGGTTCG-T-CTCAG-TG-C-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAACCTGCATTCCA-CTTTCGTAAGAAT-TTAATGGAAA-TAAAAT--TGTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CTTTTTTAGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTT---ATTTGTT-GTTT-ATGAACC-TTTGTGC-ACTGTTGG-G-TATTTG--------------AAATAT-C------C-ACTG-------------AAT---TTGAA-----ATATCCAACTGGTTAACAG-TTGGAT-AT--TTAAAATATCCCACTAGTATTCATTGAATAGTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAG
Reference ( family-1705 ) : AAAAT---CCC-CGTGAT--GAACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTCCATT--CATATATCCAACAGTA--TAGCTTTA--ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCACACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTT--T--TATTAAAAGCT-T-GTAGATAACTCAAAACTC-TAGATGNCATCGATAGT--GATTTGAANGA-TATTT-GA-AT----A-AG------AAA------GAAAAAA-AAAACCAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---AC--G-TA--GT-GA----------AT---AACTTGGTCAAACACG--GATGAT-T---TTTATGGAAA--CCTACGCAGANAATA-ATTCTAAGGACGTAAAATATGA-TG-A-CAAG-GAAAATGCACGT------TTCATAGA-ATCTATTTCCTGACGTTGAGAGAGAA---------A-AA-------------A----------------TTGCTG----------TT---------TAAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCACGATC-AAAGTGAATGGGTTCG-T-CTCAG-TG-C-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAACCTGCATTCCA-CTTTCGTAAGAAT-TTAATGGAAA-TAAAAT--TGTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CTTTTTTAGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTT---ATTTGTT-GTTT-ATGAACC-TTTGTGC-ACTGTTGG-G-TATTTG--------------AAATAT-C------C-ACTG-------------AAT---TTGAA-----ATATCCAACTGGTTAACAG-TTGGAT-AT--TTAAAATATCCCACTAGTATTCATTGAATAGTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAG
gi|1 : AAAAT---TCC-CA-GATTGAAACCTCAAGG-ACA----CTACTGAAGGCCTTCTATTATA-CCTAAACTTTGT---------------T----TAAA----------ATATA-CCAATAACA--TACATTTACCACAATTTAGACTAACCCGAAAACACCC-CATATCATACATGG-ACTGCGTGC--TT-ACAA-AACAGCTGCT-ACACCATTTCCTAC---ATGGTA-A-TCGCACCGA-CTCACA--TTGCGTGATGCGGAGGATTTTCT-------ATTAAAAGCT---GTAGATAACACAAAACTC--AGATGTCATCGATAGTTTGATTTGAAAAAATACT--GA-A----------------AA------TGAAATA-AAAACCAT-CAGAAATT-T-TCAACTTGGAATTG--------AC--AATA--GTTGA----------AT---AATTTGGT-AAACA----GATGAT-T---TTTATGGAAA----TGCGCAGAAAATT-TTGCTAAGGACGTAAAATATGA-TATACCAAGAGAAAAT-C-CTT------TTCATAAACATCTATTTGCTGAT-TCGAGAGAGAA---------A-AA-------------AAATCCAGGATCAAAATTTGC-----------------------TAAATGTATTTTCCAATCACATGTGTCTTGAGACGTTAGATACAA-------------ACTCATGATCAAAAGTGAA--------------------C-AA-TC-----AAATTTAAAGAA--GGAG-ATCATCTTAACCTGCATTTCACCTTTCGTAAGAAT-TCAATGGAAA-TAAAATC-TG-GTCTTGATT--TCTAAATTAAACGTTTTACCCCTTTTTTTTAGTCTTTTGAAAA-TACTATTACTCATGCAAATGT-TTC---A-TTGTT-GTTTAATGAACC-TCTGTGCAACT-TTGGAG-AATTTGGAAAACTTCCGTCTAAATAA-CTGTTAGC-AGTG-------------AATATCTTGGAACTATATATTCCACAGG---ACGGTTTGGAT-ATTCTTAAAATATCCCACTAGT-TTCATTGAATAGTTGAGAAT--ACACTACAACAAATAA-
gi|10 : aaaC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTT--TATTATTAAAAGCT---GTAGATAACCCAAAAGTC--AGATGCCATCGATAGT--GAATTGAAAGA-TATT--GA-AT----A-AG------AAA------GAAAAAA-AAAACCAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---AC--tgagagtatcaaagtttttttt
gi|11 : ----------AT---GACTTGGTCAAACACACAGATGGT-A---TT-ATGAAAA--CACAGACAGACATTA-ATGATAAAGCCGCACAATCTCA-GG-A-AAAG-GAAAATGCTCAT------TTCACAGA-A-CTA-TCCCTGACTTTGAGCGAGAA---------A-GA-------------C----------------TT
gi|12 : TGAAAA-TA-TATTACTCATGCAAATGTCTTC---ATTTGTT-GTTT-ATGAACC-TTTGTGC-ACTGTTGG-G-AATTTG--------------AAATATCC------C-ACTA-------------AAT-------------------AACT-GT--ACAG-TTGAAT-AT--TTGAAATATTCCACtccagatc
gi|13 : AAAATATTCCC-CGTGAT--GAACCTCAAGGGACA----C-ACTGA--GCCTTTCAT-AAT-TCCAA-CATTGTAA------AACACAATAGCATA-----------------------AGTA--T-GC--------AAT--AGCCTAACCCCAA--CACCC-C-TATCATATATag
gi|14 : ATCTGG-TG-A-AAAG-GAAAATGCACGT------TTCGCAGA-ATCTATTT-CTGACGTTGAGAAAGAA---------AGAA-------------A----------------TT
gi|15 : ACACT--GAT-AT-TCTATTTACAGAAAAGCGTATGCAGATAATA-ATTCTAAGGACGTA-------A-TG-A-AAAG-GAAAATGCACGT------TTCGTAGccagatcgatcagcatgttttgctattcattatcgctctgcgggt
gi|16 : aaattttatttcAATCCCAAAG-ACAGATGC-ATTGA--TCCTTTCAT-ATG-TACAA-CTGTGCAA------AACACAGAAGCATAAAGTCCATTCACATATACCCAACAGTA--
gi|17 : ATATCCAAGTAGTATTAATTTAATAGTTGA-AAT--ACACTACAACAAAGAA-CAATGGGTGACGTTATTGAAG
gi|19 : TAATATTGATTGAATAATTAA-AAT--ACACAACAGCAAATAA-CAATGTATGAAGTCATTAAActtt
gi|2 : gAAAAT---TCCACATGAT--GCACCTCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAA------AACACAATAGCATAAATTTCATT--CATATATCCAACAATACTTAGCTTTAC-ACAATATAGCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGCTGCTCACACCATTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACA--TTGC-TGATGCGGAT-ATTTTTTT--T--TATTAAAAGCTGTAGTAGATAACTCAAAACTCTTAAATGTCATCGATAGT--GATTTGAAAGA-TA-TT-GA-AT---------------AA------GAAAAAA-AAAACCAT-CAGAAATT-T-TCA-CTTCCAATTGGATGT---AC--G-TA--GT-GA----------A----AATTTGGTCAAACACG--GATGATAT---TTTATGGAAA--CCTACGCAGA-AATATATTCTAAGGACGTAATATATGATTG-A-CAAG-GAAAATGCACTT------TTCATAAA-ATCTATTTCTTGATGCTGAGAGAGAA---------A-AA-------------A----------------TTG-------------------------AAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCGTGATC--AAGTGAATGGGTTCA-T-CTCAGTTG-T-AA-TCAATCGAAATTCAAA-AA--GGAG-AT-ATCTTAAGCTGCATTCCA-CTTTCGTAAGAAT-TTAGTGGAAA-TAAAATTGTGTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CTTTTTTAGTCTTTTGAAAA-TA-TATTAC-CATGCAAATGTCTTT---A-TTGTT--TTT-AT-AACC-TTTGTGC-ACTGTTGG-G-TATTTG--------------ACATATCC------C-ACTG-------------AAT---TTGAA-----ATATCCCACTGGTTAACAG-TTGGAT-AT--TTAAAATATCCCACTAGTATTCATTAGATAGTTGA-AAT--ACACTACAACAAATAA-CAATGGATGACGTCATCGAAGttttcttt
gi|20 : ---CCC-TCTGAT--GAACCTCAAGG-ACA----C-ATTGA--GTCTTTCAT-ATA-TCCAA-CTGTGTAA------AACACAAT
gi|21 : cACCTCAAGG-ACA----C-TCTGA--GCCTTTCAT-ATA-CCTAA-CTTTGTAA------AATACCATAACATAACTT
gi|22 : AAAAT---CCC-TCTGAT--GAACCTTAAGG-ACA----C-ATTGA--TCCTTTCAT-ATA---CA-------TAT------AACACAATA
gi|23 : tACAAATAA-CATTGGATGACGTCATTAAAG
gi|3 : AAAGCT-T--TAGAGAACTTAAAACT--TAGATTACATCGATAAT--GATTTCATTGA-TATT--GA-AT----G-AG------AAA------GAAAAAA-ACA--CAT-CAGGAATT-T-TGA-CTTGCAATTAGATAT---AC--G-TA--GA-GA----------AT---AAATTGGTCAAACACG--GATGAT-T---TTTATGGAAA--ACTATGCAGGCAATA-ATTCGAACGACGTAAAATATTA-TG-A-CAAG-GAAAATGCACAA------TTCATGAA-ATATATTT-CTGACGTTGGGAGAGGATTCCAGATCA-AG-------------A----------------TTACTA----------TTGTGTTTATATAAAGG---GATACA--TGCATATGTCTTT-GAAGTT--CTACAAATGTGAAACTTCTACTCACAATC-AAAGTGAATTGGTTTGTT-CTCAG-TGCC-AA-TCTATCAAAATTCAAA-AT--GGAG-AT-TTATTAATCTTAATTCAA-CTTTAGTAAAAACATTAATGGAAG-TTACAT--TGTATCTTAATT--TCTAAA-TAACTT-TTAACCCC-CGTTTttttctaacctca
gi|3 : -TTTGTGC-ACTGTTAG-A-TATTTC--------------AGATAT-CA-----A-ACTGAATAACAGTTGTAAAT---TTGAA-----ATATCAAACTGGATAGCAG-TTGTGT-AT--TTAATATACCCCACTAGTATTCATTGAATAGTTGA-GAT--ACACTACAACAAATAA-CAATGGATGACGTCATCAAAGgtgcactgttagatatttcagatatcaaactgaataacagttgtaaatttgaaatatcaaactggatagcagttgtgtatttaatataccccactagtattcattgaatagttgagatacactacaacaaataacaatggatgacgtcatcaaagtttattt
gi|4 : aaagctttagagaacttaaaacttagattacatcgataatgatttcattgatattgaatgagaaagaaaaaaacacatcaggaattttgacttgcaattagatatacgtagagaataaattggtcaaacacggatgatttttatggaaaactatgcaggcaataattcgaacgacgtaaaatattatgacaaggaaaatgcacaattcatgaaatatatttctgacgttgggagaggattccagatcaagattactattgtgtttatataaagggatacatgcatatgtctttgaagttctacaaatgtgaaacttctactcacaatcaaagtgaattggtttgttctcagtgccaatctatcaaaattcaaaatggagatttattaatcttaattcaactttagtaaaaacattaatggaagttacattgtatcttaatttctaaataacttttaacccccgTGT---AC--A-TA--GT-GA----------AT---AATTTGGTCAAACACG--GATGAT-T---TT-ATGGAAA--CCTACGCAGAAAATA-TTTCTAAGGACGTAAAATATGT-TA-A-CAAG-GGAAGTGCACTT------CTCATAAA-ATCGATATC-TGATGCTGAGAGAGAA---------A-AAGTTCCAGATCAAGA----------------TTGCTGAATGTATTTATT---------TGAATG---GCTCCA--TACATGTGTCTTT-GACGTT--CTACAA-------------ACTCATGATC-AAAGTGAATGGGCTCA-TTCTCAG-TG-TGAA-TCAATCGAAATTCAAA-AA--TGAG-AT-ATCTTAACCTGCATTCCA-CTTTCGTAGGAAT-TCAGCGGAAA-TAAAAT--CGTGTCTTGATT--TCTAAATTAACTG-TTTACCCC-CCTTTTTAGTCTTTTGAAAA-TA-TATTACTCATGCAAATGTCTTT---ATTTGTT-GTTC-ATGAACC-TTTGTGC-ACTGTTGG-G-TATTTG--------------AAATAC-C------CAACTG-------------AA---------------------------TAACAG-TTGGAT-AT--TT-AAATATCCCACTAG------TTGAA-------------ACACTACAACAAATAA-CAATGGATGACGTCATCGAAGtttattt
gi|5 : tttcatccttctatactact-TG-C-AAATCA-TCAAAATTAAAA-AAAAGGAATAT-ATTTTAATCTGAATAGCA-CTTTAGTCAGAAT-TTCATAAAAAGTAAAAT--TGTGTCTTAAATAATCTAAAT-AACT--TGTCCGCC-CTGTTTTAGTCTTTCGAAAAACA-TATTTCTCTTGCAAATTTCTTTTTTATTTGTTTGTTTCATGAACCCTTTGTGC-ACTGTTGG-AATATTTG--------------AAAT------------------------------------T--------ATAACCA-CGGATTAACAG-TTGGATTAT--TTCAAATATCCCA-TACGATTCATTGA-TAGTGGA-ATTTAACAATACAACAAATAGGCAATGGATGACGTCATCGAAGtttttta
gi|6 : ctttcacgttctactaaacaaatgtgaaactgcttactaaaaccttctcttcctttttcgcgagcaatAAAAT---CCC-CATGAT--GAACCCCAAGG-ACA----C-ACTGA--GCCTTTCAT-ATA-TCCAA-CTTTGTAAGCTTAAAACACAATAGCATAAATTCCATT--CATATATCCAACAGTA----GCTTTAC-ACAATA--GCCTAACCCGAA--CACCC-C-TATCATACATGG-ACTG-GTGCCTTT-ACAA-AACAGAAGCTAACACCGTTCCTTAC---ATG-TA-CCTCG-ACTGA-CACACG--TTGC-TGATGCGGAG-ATTTTTTTTAT--TATTAAAAGC--T-GTAGATAACCCAAAAGTC--AGATGCCATCGATAGT--GAATTGAAAGA-TA-TT-GA-AT----A-AG------AAA------GAAAAAA-AAAACCAT-CAGAAATT-T-TCA-CTTGGAATTGGATGT---ACAAG-TA--Gtt
gi|7 : aC---ATA-TA-CTTTG-ACTGATCATATGCATTTT-TGATAGAGAG-AATTTTTT--T--TATTCAAAACT-T--TAGAAAACTCAAAACG--TAGATGACATCGATAGT--GTTTTGAATGA-TATTTAGA-AT----TTAG------AAGCTGACCGAAAAAATAAAACCCTTCGGGAATTATATGA-CTTGGAATTGGATGTTCTAC--G-CACAGT-GA----------AT---AACTTAGTCAAACACG--GATGAT-T---AGTATGGAAA--C------------------CTAAGGGCGTAAAATCTGA-TG-A-CAAG-GAAAATGCACGTTTCATATTCATAGA-ATCTATTTCA-GACGTAGAGAGAGAG---------A-
gi|8 : CATCGATAGC--GTTTTGAATGA-TATTT-GGGATTTAGA-AGCTGAACAAA------AGAAAAA-AAAATCA---AGAAATT-T-GGA-CTTGGAATTGGATAT---AC--G-TA--GT-GATGTTCCTTAGATAAAAACTTAGTCAAACACA--GATGAT-T---ATTATGGAAA--CCTACGCGGATAATA-ATTCCAAGG--GTGAAA-ATG--TG-A-CAAG-GAAAA------T------TTCATAGA-ATATATg
gi|9 : aAAAAT---CCC---TGGT--GA-CATCAAGA-AAAA---C-CTTGA--GCCTTCAAT-AAAACCCAA-CTTTGTAA------AACACAATAGCA-AAATTTCATT--C--ATATCCAGCAGTT--TAAAATTA--AC-ATATAGCCGAACCC-AA--CACCCAA-TATCGTACATGGAACAA-GTGCCTTTAACAACAACTGCTGCTCACATCATTCCTAACAAAATG-TACCCTCG-AC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATGCATGTTTTGCAAAATCCTTTTATTTTCAGAAAGAAAGTTCATATCGATTNTTGTAAATGCATGTTTTGC
Unaligned ( gi|24 ): TTGCTGAATGTATTTATTTGAATGGCTCCATGCA