lowQualScore : 111111111111111111111111111111111 2222222222222222222222222222 2222222222222222222
lowQualScore : 11111 5555555555555555 1111111 666666666666666666666666666666666666666666666 1111 55555555555555555555 11 55555 22222 000000000000000000000000000000000 11111111 3333333333 11 555555555555555555555555555555555555555555555 111 0000000000000000000000000000 444444444444 33333 11111 1 11111111111 1 1 3333333333333333333
lowQualScore : 44 77777 55 3 2222222222222222 0000000 33 2 2 4 2 2 33 5 2 2 2 33 2 111111111111111111111111111111111111111111111 6666 555 4444 3 66666666666666666666 2 5555 77 2 66 2 1 2 4 6666 2 3 99 3 3 555 22222 777777 2 2 22222 3 3 3 777777777777777777777777777777777 66666666 6 2222222222 77 5 666666666666666666666666666666666666666666666 3333 555555 555 22 777777 1 6 4444444444444444444444444444 8 3 555555555555 3 3 3 22222 00000 3 55555555555 3 8 55 4 0 5555555555555555555
lowQualScore : .. ..... .. . ................ ....... .. . . . . . .. . . . . .. . ............................................. .... ... .... . .................... . .... .. . .. . . . . .... . . .. . . ... ..... ...... . . ..... . . . ................................. ........ . .......... .. . ............................................. .... ...... ... .. ...... . . ............................ . . ............ . . . ..... ..... . ........... . . .. . . ...................
lowQualScore : 33 11111 00 3 2222222222222222 2222222 77 5 4 7 4 4 22 0 5 9 9 99 9 111111111111111111111111111111111111111111111 1111 444 1111 1 55555555555555555555 7 7777 77 7 99 7 1 7 7 1111 9 1 11 1 6 000 44444 111111 9 9 22222 1 5 3 222222222222222222222222222222222 11111111 7 0000000000 66 7 444444444444444444444444444444444444444444444 9999 222222 555 55 777777 8 7 5555555555555555555555555555 0 0 444444444444 0 3 1 22222 00000 3 88888888888 6 3 55 4 0 5555555555555555555
consensus : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTA--------------GTG------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------AT---A------------N---T----TTTT---AATTTTCCCTAAAAACATT-A--CGTC--C------A-TGCAT-T----TT-AC-ACAAAAA-CACG-ATTGCTGA-TACGTACA----C-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCTAACA---ATAACTTTTCAGA-TA-ATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAGCCA-G-----------------------G---------TA--------ACGTCACGTGA-TATA--T--AT-G-CATGAGGTTAGTCTGGTC-CCCG------CC--------------------------A----------GTGA----TC------AAA--GAGTG--GC------GGGGGC-GGGGACCAGACTAAGCATGAGGTACGAATGCTAGTGTCG-----CTTAGG-CAAAGC-GTAA-GTTCATTTGGCGTGCGTG-GAAGAAACAGCAGGTCAATTTCTAATCAAAGTTGG--NN-CAAATCATCCT-----TGAGTTAAGGAAATTCA---A-----GTA-AACTGTGCCCATGTT--CA-TTTATA------------TTGTAGGAGCGGAGGGTGTA
Reference ( gi|1 ) : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTA---C---------GGTG------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------AT---A------------T---T----TTTT---AATTTCCCCTAAAAACATT-A--CGTC--T------A-TG-AT-T----TT-GC-ACAAAAT-CACG-ATTGCTGA-TACGTATA----C-TATCTTTATTCAG-GAAGTTCTGTTA-GGTAA-TCTAACA---ATAACTTTTCAGGTTATATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAGCTA-G-----------------------G---------TA--------ACGTCATGTGA-TATA--T--AT-G-CATGAAGTTAGTCTGGTC-CCCG------CC--------------------------A----------GTGA----TC------AAT--GAGTG--GC------GGGGGC-GGGGACCAAACTAAGC------TA-----GC--ATG--G-----CTTAGG-CAAAAC-ACAATGTTCAGTTGGTGTGCGTG-GGAGAAACAGCAGGTCAATTTCTAATCAAAGTTGG--AT-CAAATTATCCT-----TGAGTTATGGAAATTGA---A-----GTA-AACTGTGCACATGTT--CA-TTCATACAAAAAAAAAAAATGTAGGAGCGGAGGGTGTA
gi|9 : GCTAGCGCTTTCG---GGCGCTAGCATATA--CT-TTA--------------GTG------TTTTTG--CAG-C-CAATGCGCATGCT-T-GGC-A--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------AT---A------------T---T----TTT----AATTTCCC-TAAAAATATT-A--ACTC--C------A----AT-TCGTATT-GC-ACAAAAA-CACG-GTTGCTGA-TACGTAAA----C-
gi|9 : aaatcagtcgatttttcagcatttgtcatgacaataaacaaagggaactatcaaaaattttcagaaatcattgttacGCTAGCGCCC--GAAAG-CGCTAGCATATATACG-TTA-------------AGTA------TTTTTG--AAG-C-CAATGCGCATGCT-T-GGC-A--Gatatatacgttaagtatttttgaagccaatgcgcatgcttggcagta
gi|44 : aaatcagtcgatttttcagcatttgtcatgacaataaacaaagggaactatcaaaaattttcagaaatcattgttacgtttacgtatcagcaaccgtgtttttgtgcaatacgaattggagttaatatttttagggaaattaaaaatatagaactcccagaatgccgcactatggctgccaagcatgcgcattggctgcaaaaacactaaagtatatGCTAGCGCGCTCGA--G-CGCTAGCATAAA--CG-TTA--------------GTA------TTTTTG--CAG-C-TAATGCGCAta
gi|30 : gttataGCTAGTGCCTCGG---G-CGCTAGACTATA--CAATTAGTGCTTTGGATGAGGTGGTTGGTTTTTTT--CAG-C-TAATGCGCATGCTCT-TGC-G--GC-CAT-AG
gi|28 : CTAGCGCCCGAG---GGCGCTAGCATATC--CG-T-----C---------AGTG------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-A--TC-CAT-AGTGC-AG-CATTCT--GG-GAGTT------------
gi|15 : gattaTAGCGCCCTCG---GGCGATAGCATATA--CG-TTA--------------GTG------TTTTTG--CAG-C-TAATGTGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------AT---A----------------T----TAAT---AATTTTCACTAAAAACATT-A--CGTT--TGGCTAGA-TG-AT-T----TT-AC-ACACAAA-CACG-ATTGCTAA-TACGCATA----C-TACCTTTATTCAG-GAAGTTCTGTTT-AGTAA-TCTAACAATTATAACTTTTCCGG-TA-ATGAACTCTT--TC--G-A-TACTT-C-CTGT-AAGCCA-G-----------------------G---------TA--------Aag
gi|38 : AGCGCCCTCG---G-TGCTAGCATATA--CG-TTA--------------GTA------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GCATAT-AGt
gi|11 : ---G-CGCTAGCATATA--CG-T-----C---------AGTG------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------TT---------GT---A----------------T----TTTT---AATTTACCCTAAAAACATT-A--CATC--T------A-TG-AT-T----TT-ACAAAAAAAA-CACG-ATTGCTGA-TACGTATA----C-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCAAACA---ATAAC------------ATGAACTCTT--TC--G-A-TACTT-TCC-GT-ATGCCA-GGTAATTTACATTCGGTTCTTTCCG---------TA--------ACGTCATGTGC-TATAATT--AT-G-CATGA
gi|14 : cgctaga-CGGTAGCATATA--CG-T------------------------------G--CA-----AATGCGCATGCT-T-GGA-T--GC-CAT-AGTGC-GG-CATTCT--GG-GA---------------TT---------AA---A------------A---C----TGT----AATT------AAATCCAAT-A--C-----------------AT-T----TT-AC-ACAAAAA-CACG-ATT-------ATGCACA----C-TA----------G-GAGATTCTGTTA-AGTAC-TCTAACA---ATAACTTTTCAGA-TA-ATGAACTCTT--TT--A-A-TACTT-T-CAGT-AAGCCATG-----------------------C---------TATTTCCATTACGTCACGTGG-TATA--CA-AT-G-TATct
gi|10 : TAGTATATA------TA---CATG------GGT-------TTTTTG--CAGGC-TAATGCGCATGC--T-GGC-T--GG-CATAAGTGT-GGCCATTCT--GG-GAGTTATTA--------TT---------AT---ACTGTTAATTTTTT---C----TTTT---TATTT-CCCTAAAAACATTAA--CATT--C------A-AACAT-T----TTAAC-ACAAAA--CACtcataggatgaggtgcaattatacagacacgaggtaggcc
gi|3 : taaccatcttgttcaaaagttgttcttcttttaatattagaatgtacaccaccattacaatgccatttttggttatgtatgtatcgcatttgtatataaatgtaataagatggtacgtcttaaggcaatagatata--CA-TTA--------------GTG------TTTTTG--CAG-C-TAATGCGCATGCT-T-AGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAATTATATTTTTA---CT---------GT---A------------A---T----TTTT---AATTTTCCCTAAAA-CATT-A--AGTC--C------AATACAT-T----TT-AC-ACA----------------GA-TACATACA----C-TATCTTTATTCAG-GAAGTTCTGTTA-AATAA-TCTAACA---ATAACTTTTCAGA-TA-ACGAACTCTT--TC--G-A-TACTT-TCC-GT-AAGCCA-G-----------------------G---------TA--------Acact
gi|8 : G-TTA--------------GTG------TTTTTGGGCGG-CCTAATGCGCATGCT-T-GGCCG--GCACAT-AGTGCCGG-CATTCTTGGGCGAGTT------------CT---------AT---A------------C---T----TTTTTATAATTTTTCCTAAAAAC-TT-AAACGTC--T------A-TT-ATCT----TT-AC-TTAACAA-CACG-ATTGCTGA-TACGTATAGTAACGTATCTTTATTCAG-GAAGTTCTGGTACAGTAACTCTTAAA---AT-ACTTTTCAGG-TA-ATGAACTCTT--TC--GCATTACTT-C-C-GT--AGCCA-GGTAAGTTACATCGGTTCTTTCC-G---------TA--------ACGTCATGTGAGTATAATT--AT-G-CATGAtttacattcggctctttctgcaacttcatgtgatatatgcacgatactgatacgaggtttagctagtggttatacttttggcgtgcgtggaagaaacagcaggtcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttatgcccatgttctgtgataggagtggagggtgt
gi|21 : ---------GGTT------TTTTT---CAG-C-TAATGCGCATGCTCT-TGC-G--GC-CAT-AGC----A-CATTCT--GG-GAGT--------------T---------AT---A------------T---TAGAACTGT---AGTTTA----AAAAACATT-T--AATC--CA-----A-TACAT-T----TT-AC-ACAAAAT--ACG-ATTACTGA-TA
gi|2 : TTTTG--CAG-C-TAATGCGCATGCT-T-GGC-A--GC-CAT-AGTAC-AG-AATTCT--GG-GACTT------------CTCTAAAACTCGT---A------------A---T----TTTT---AATTTTCC-TATAGACATT-A--AATC--C------AATGCAT-T----TT-AC-ACAAAAA-CACG-ATTGTTGA-TATCAAAA----C-TATCTTTATTCAG-GAAATTTTGTTA-AATAA-TCTAA-A---ATAACTTTC--GGATA-ATGAGCTCTT--TA--G-A-TACTTCC-C-GT-AAGCCA-gtta
gi|7 : TTG--CAG-C-TGATGCGCATGCT-TTGGC-G--GC-CAT-AGTGC-GG-CATTTT--TG-GAG-------------------------------------------T---T----TTTT--------------------TT-A--------------------AT-T----TT-CC-CTGAAAA-CACG-ATC-------------A----C-TATCTTTATTTAG-GGAGTTATGTTA-AGTAA-TGAAATA---ATAACTTATCAGATAATGT--ACTCTT--GC--A-G-TACTT-TCC-GT-AAGCCA-G-----------------------G---------TA--------Atttcattggcggtcgttcaaataatttatattcggttcctttcgtgacagtgcgcgggaaaaaatctgcctttgagagtttccgtaacgtaatgtgatggaaatacaggtacgaatatttcgaggttggcctagtgttatatttggacaaagcgtggaagaaacagcagatcactttccaatcaaagttggcacaaatcttctttggtttaaagaaatttaagtaaactgtgttcatgttcatttatagtagcggagggtg
gi|32 : G-C-TAATGCGCATGCC-C-GG--GAAGC-CAT-ATTGC-GG-CATTCC--GG-GAGTTATATAGACTGAACT---------GT---A------------A---T----TTTT---ATTTTCCT---AAAACATT-tttacgtttggttctttccgtttcgtcttgtgatgtatgcatagcatgaggtatagatatacctacatgagtttggcctagtagttatacttaagacaaagcgtagcagttggtgtgcgtggaagaaacagcaggtcattttctaatcaaagtttggccaca
gi|13 : -TAATGCGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--AG-GAGTT------------AT---------A----A------------TGAAT----TCTT---AATTTTCCCTAAAAACATT-A--ACCCAAT------A-CC-AT-T----T--GC-ACAAAAA-CACG-ATTGCTGA-TACGGACA----C-TATCTTTATTCAG-GGAGTTCTGTGA-AGTAA-TCTAAAG---ATAACTTTTCAGA-TAT-TGAACTCTT--TG--G-A-TTCTT------T-ATGCCA-G-----------------------G---------TA--------A
gi|46 : TGCT-T-GAC-G--GC-CAC-AGTGC-GG-TATTCT--GG-AAGTT------------AC---------ATAGAA------------T---T----TTtttacactcggttctttttgtgacagagtgcggctttcgagagttttcgtagattgtgcctatg
gi|29 : T---A------------A---T----TTTT---AAATTTCCCTAAAAACATT-A--AATC--C------AATACAT-T----TT-TC-ACAAAAA-CGCG-ATTGCTGA-TACGTACA----C-TATCcattatt
gi|6 : gagttatatagaaaag------A-TGCAT-T----TT-AC-ACAAAATACACG-ATTGCTGA-TACGTACA----C-AATCTTTATTCAGAGGGGTTCTGTTA-AGTAA-TATAACA---ATAACTTTACAGG-TA-ATGATCCCGTAATCCAG-G-TAATT-TAC-AT----TTG-GTTCTTTCC---------------G---------TA--------ACGTCATGTGA-TGTA--TGCATAG-CATGAGGT
gi|23 : -AT-T----TC-AC-ACGAAAA-CACG-ATTGATGA-TACGTACA----C-TATCTTTATTCGG-GAAGACCTGTAA-AGT---------A---ATAATTTTTCAGA-TA-ATGAACTCTT------G-A-TACTT-T-CTGT-AAGCTA-acgaatacaccgacacaaattggcctattggttatacttaggcaaagtgtaacatttggcgtgcatggaagaaacagcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcatgttcatttataagagcg
gi|5 : ctaatac-AT-A----TT-AC-ATAAAAC-AACGGATTTATGAATATGTATA----C-TATCTTTCTTCTG-CAGTTCCTGTTA-AGTAA-TATAACA---ATTACTTTTCAGA-TA-ATTAACTCAT--T---G-A-TACTT-TCC-GT-AAGtgaa
gi|4 : AAAAA-CACG-ATTGCTGA-TATGTTAA----C-TATATTTATTTAG-GGAGTTCTGTTA-AGTAA-TCTAAAA---ATA-----------------AACTCTT--TC--G-A-TACTT-T-CTGTCAAGCCA-agcttagattttaccattcgggttttttcgtaacgtatgtgaatgcaatgtataatgcacatgtgaggtgcaaattcttagtggttatacttgggcaaagcgttgtgcgtgcggaagaacagcggtcaatttctaatgaaagttggcacactatcctgtgcttgattaaaagaaattcaagtaaattgtgctcatgttaattataggaagcggaaggtgt
gi|12 : TTCAG-GAAGTTCTGTTG-AGCCA-TCTAAAA---ATAACTTTTCGAAT--TATGAACTCCT--TT--G-A-TACTT-T-tttcattggctgtgaagtaatttacattcgatgtaacagtgcgcgggaaaaattctgccttcaagtttttgtaatgtcatgttatgtataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatactgatttgtggaaagcgtcatggcgtgcgtaggaaaacagctggtcaaagttggcacaaatcatcggaaattcaactcaagtaaactgtgtccatgttcatttatagtagcgaggaga
gi|25 : ACA---AAAACTTTTCAGAT-A-ATGAACTCTT--TG--G-A-TACTT-T-CGGT-AAGTCA-G-----------------------GACTTTTCCATA--------AAGTCACGTGA-TGTA--T--A----CATAGGATTAGtcattggtggtcgttcaagtagtttacattcggctcttttcgtgaccgtgcgcgggtaaaattctgccttcgagaaatttccgtaacatcatacatatgaagtacgaatataaattccaaggttggcctggtggtatacttaggaaaacatgcgtgaaagaaacagcaagtcgatttttaatcaaagtggacataaatcatca
gi|17 : GTGA-CATG--T--AC-CTCATGC--TTAGTCTGGTC-CCCG------TC--------------------------CCTCT------TTGA----TCACCCGTAAC--GAGTG--ATCAGAAGAGAGGC-GGGAACCAGAgtacaaatatacagatacgagg
gi|41 : GCTAGCCTGGTC-CCCG------CTCCCTGGGAACG---------------A----------ATGA----TC------AAA--GAGTG--GC------GGGGGC-GGGGACCAGACTAttcggcaaagccgtaagttcatttggcgtgcgtggagaaacagcaggtcaatttctaaccaaagttaaacacaaattatccttagttaagaattaattcagtaaactgtgcccatgttaaggcggagggtgga
gi|16 : TTAGTCTGGTC-CCCG------CCCCACCACTCTGTTATCACTCGTAACGA----------GTGA----TC------AAA--GAGTG---T------AGGGGC-GGGGACCA
gi|36 : cTTAGTCTGGTC-CCAG------CCCCCCAACACTC---------------A----------TTGACTACTC------ATTTTGAGTG--GC------GGGGAC-GGGAACCATACgcatgaggtacgaatgctagtggttatacttgggcaaagcgtaatgttcatttggcgtgcgtgggagaaacagcaggtcaatttctaatcaaagttggcacaaattatgcttgagttaggaaattcaagtaaactgtacccatgttcatttataggagcggggaatgt
gi|41 : TAGTCTGGTC-CCCGCCCCCGCC--------------------------ACTCT------TTGA----TC-------AT--TCGTT--CCCA----GGGAGC-GGGGACCAGGCTAc
gi|17 : TCTGATCACTCG------TT--------------------------ACGG-------GTGA----TC------AAA--GAG--------------GGAC-GGGGACCAGACTAAGCATGAGGTA------C--ATGTCA-----CTTCGG-CAAAGCCGTAA-GTTCATTTGGCGTGCGTG-G-AGAAACAGCAGGTCAATTTCTAACCAAAGTTAA--ACACAAATTATCCT-----T-AGTTAAG--AATTAATTCA-----GTA-AACTGTGCCCATGTT--gc
gi|36 : tctggttcccgcctctctGTC-CCCG------CC--------------------------ACTCAAAATGAGTAG----TC------AAT--GAGTGTTG-------GGGGGC-TGGGACCAGACTAAaaggcggagggtgga
gi|16 : --------------------------A----------GTGA----TA------ACA--GAGTG--GT------GGGG-C-GGGGACCAGACTAAGCATGAGGTACGAATGCTAGTG--GTTATACTTGGG-CAAAGC-GTAATGTTCATTTGGCGTGCGTG-GGAGAAACAGCAGGTCAATTTCTAATCAAAGTTGG--CA-CAAATTATGCT-----TGAGTTA-GGAAATTCA---A-----GTA-AACTGTACCCATGTT--CA-TTTATAgggaaccatacc
gi|51 : ctggtccccgcccctacactctttgatcactcgttacg--------------------------A----------GTGA----TC------AAA--GAGTG--GC------GGGGGC-GGGGACCAGACTAggagcggggaatgt
gi|49 : cg--------------------------A----------GTGA----TC------AAG--GAGTG--GC------GGGGGC-GGGGACCAGGCT
gi|31 : aaca--------------------------A----------ATGA----TC------AAA--GAGTG--GC------GGGGGC-GGGGACCAGACT
gi|31 : --------------------------A----------ATGA----TC------AAA--GAGTG--GC------GGGGAC-GGGGACCAGACcgttctgggcagaacgaatgatcaaagagtggcggggacggggaccagac
gi|33 : agtctggtccccgcccccgccactctttgatcattcgttctgggcagaacg--------------------------A----------GCGA----TC------AAA--GAGTG--GC------GGGGGC-GGGGACCAGA
gi|35 : tggtccccgcttccgccactctttgatcacacgctccggcaggacg--------------------------A----------GTGA----TC------AAA--GAGTG--GC------GGGGGC-GGGGAC
gi|26 : ggtcactctttcaacacttgttttgggggcccctaaaca--------------------------A----------GTGA----TC------AAA--GAGTG--GC------GGGGGCGGGGGACCAt
gi|26 : tcgtcagtagcatgtaccattagtaggacctggtcccgcccccgccactatttgatcactcgttctggg--------------------------A----------GTGA----TC------AAA--TAGTG--GC------GGGGGC--GGGACCAg
gi|37 : tcgtcagtagcatgtaccattagtaggacc--------------------------A----------GTGA----TC------AAT--GAGT-----------GGGGGC-GGGTACCAGACTcgttctgggagtgatcaaagagtggcgggggcgggggaccag
gi|43 : --------------------------A----------GTGA----TC------AAC--GAGTG--GT------GGGGGC-GGGcgttttgtgatcaaagagtggtggggtggggaccag
gi|47 : tggtcccccgccacttattcatcattcgttttggg--------------------------A----------GTGA----TC------AAA--GAGTG--GC-------------GGGGACCAGACT
gi|34 : gttctgggagtaacccagaaca--------------------------A----------ATGA----TC------AAAA-GAGTG--GC------GGGGCC-GGGGACCAGA
gi|33 : cgcccccgccactctttggattcattcatactggaaacg----------GTGA----TC------AAA--GAGTG--GC------GGAAGC-GGGGACCA
gi|37 : ----------GTGA----TC------AAA--GAGTG--GT-------GGGGT-GGGGACCAacgctccggcaggacgagcgatcaaagagtggcgggggcggggaccaga
gi|7 : agtctggtacccgcccccactcattgatcactcgtttt-----CTTAAGACAAAGC-GTAG----CAGTTGGTGTGCGTG-GAAGAAACAGCAGGTCATTTTCTAATCAAAGTTTG--GC-CAg
gi|6 : ttgcagctgatgcgcatgctttggcggccatagtgcggcatttttggagttttttttaattttccctgaaaacacgatcactatctttatttagggagttatgttaagtaatgaaataataacttatcagataatgtactcttgcagtactttccgtaagccaggtaatttacgtttggttctttccgtttcgtcttgtgatgtatgcatagcatgaggtatagatatacctacatgagtttggcctagtagttata-----CTTAGG-CAAAGT-GTAA----CATTTGGCGTGCATG-GAAGAAACAGCAGNNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNNNNN-----NNNNNNNNNNNNNNNNN---N-----NNN-NNNNNNGTTCATGTT--CA-TTTATAca
gi|18 : atgcattttacacaaaatacacgattgctgatacgtacacaatctttattcagaggggttctgttaagtaatataacaataactttacaggtaatgatcccgtaatccaggtaatttacatttggttctttccgtaacgtcatgtgatgtatgcatagcatgaggtacgaatacaccgacacaaattggcctattggttata-----CTTAGG-CAAAAC-GTAAC-TT---TTGGCGTGCGTG-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNNNNN-----NNNNNNNNNNNNNNNNN---N-----NGA-AATTGTGCCCATGTTGACAGTTCAT-------------TTATAGGAGCGGAGGGTagagcg
gi|3 : tgaggtatacgaaataccgatacgaggtttgtttagtggttataTTGGCGTGCGTG-GAAGAAACAGCAGGTCAA
gi|4 : cattagtgtttttgcagctaatgcgcatgcttagcggccatagtgcggcattctgggaattatatttttactgtaatttttaattttccctaaaacattaagtccaatacattttacacagatacatacactatctttattcaggaagttctgttaaataatctaacaataacttttcagataacgaactctttcgatactttccgtaagccaggtaatttacattcggctctttctgcaacttcatgtgatatatgcacgatactgatacgaggtttagctagtggttatacttTGGCGTGCGTA-GGA-AAACAGCTGGTCAA-----------AGTTGG--CA-CAAATCATC---------------GGAAATTCA---ACTCAAGTA-AACTGTGTCCATGTT--CA-TTTATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttatgcccatgttctgtgataggagtggagggtgt
gi|27 : aaaaacacgattgctgatatgttaactatatttatttagggagttctgttaagtaatctaaaaataaactctttcgatactttctgtcaagccatttcattggctgtgaagtaatttacattcgatgtaacagtgcgcgggaaaaattctgccttcaagtttttgtaatgtcatgttatgtataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatactgatttgtggaaagcgtcaTGGCATGCGTT-GAAGAAACAGCAGGTCAgtagcgaggaga
gi|22 : aagcgttaGGCGTGTGTG-GGAGAAACAGGAGGTCAATTTCCAATCAAAGTTGGCCA--CACATTATCCT-----TGAGTTAAGGAAATTCA---A------TATAACTGTGC-CATGTT--CA-TGCAT-------------TTGTAAGAGCGGAGGGTGTAtccttgggttaagaaaatttagatacgtatatatacatcgtgtccatgttcatttata
gi|5 : TGTGCGTGCGGAAGAACAGC-GGTCAATTTCTAATGAAAGTTGG-----CACACTATCCTGTGCTTGATTAAAAGAAATTCA---A-----GTA-AATTGTGCTCATGTT--AA-TT-ATA
gi|12 : atattacataaaacaacggatttatgaatatgtatactatctttcttctgcagttcctgttaagtaatataacaattacttttcagataattaactcattgatactttccgtaagagcttagattttaccattcgggttttttcgtaacgtatgtgaatgcaatgtataatgcacatgtgaggtgcaaattcttagtggttatacttgggcaaagcgtTGCGTG-AAAGAAACAGCAAGTCGATTTTTAATCAAAG-TGG--ACATAAATCATCggaagcggaaggtgt
gi|2 : ttcaggaagttctgttgagccatctaaaaataacttttcgaattatgaactcctttgatacttttcattggtggtcgttcaagtagtttacattcggctcttttcgtgaccgtgcgcgggtaaaattctgccttcgagaaatttccgtaacatcatacatatgaagtacgaatataaattccaaggttggcctggtggtatacttaggaaaacaGCGTG-GAAGAAACAGCAGATCACTTTCCAATCAAAGTTGG--CA-CAAATCTTCTT-----TGGTTTAAAGAAATTTA---A-----GTA-AACTGTGTTCATGTT--CA-TTTATA--------------GT---AGCGGAGGGTGa
gi|53 : ttttgcagctaatgcgcatgcttggcagccatagtacagaattctgggacttctctaaaactcgtaatttttaattttcctatagacattaaatccaatgcattttacacaaaaacacgattgttgatatcaaaactatctttattcaggaaattttgttaaataatctaaaataactttcggataatgagctctttagatacttcccgtaagccatttcattggcggtcgttcaaataatttatattcggttcctttcgtgacagtgcgcgggaaaaaatctgcctttgagagtttccgtaacgtaatgtgatggaaatacaggtacgaatatttcgaggttggcctagtgttatatttggacaaaGGTCAATTTCTAATGAAAGTTGG--
gi|48 : AAGTTGG--TG-CAAATTGAACT-----TGAGTTATGGAAATTCA---A-----GTA-AACTGTGcacatatc
gi|40 : TCATCCT-----TGGGTTAAGGAAATTCA---G-----GTA-AATAGTGTTAATGTT--CA-TT-ATA------------------GAGCGGAGGGTGTA
gi|45 : TA-AAGTGTGCCAATGTT--CA-TTTATA-----------------GGAGCGGAGGGTGTt
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): CGGATATTCTTTCTTGACATTTCGCGGGAATATGAACCATTTTATGGGTAGTCGTTCAAGTAATTTACATTCGGTTCTTTTNGTTAACTTGTAAACAATTCTGACTTCTCGAGTTTCCGCAACATCATGTGACGTACATGTATG
Unaligned ( gi|20 ): TATATATGTCTTGCACTTACTGTCTTGTTTAAAAGTTATTCTCCATTATTTGAATCTGCACACAACTATATAATGCCATTTTCATGTATTTAGATACAGACTGTATACACATTATGATAATGTGATAAGATGTATG
Unaligned ( gi|24 ): TATATAACCATCTTGTTTAAAAGTTGTTCTTTTAATATTTGAATTTGTATACCACCATACAATGTCATTTTTGTTTATGCACAGGTATGCATATTGTAACATGTATGCATATAG
Unaligned ( gi|39 ): TCGTTCAAGTAATACATTCGGTTCTTTTTGTGCAGCTCAGAAAACAATTCTGACTTCTCGAGTTCC
Unaligned ( gi|42 ): GTCTGGTTCCCGCCGGCATTTTGATCATATCGTTCGAATGATCAAAGAGTGGCGGGGACCAGA
Unaligned ( gi|50 ): GCAGCATCGGCTTCCCAACTCTGCAACATCTTGAACAT
Unaligned ( gi|52 ): CGTATTAGTTTGTACTATCAATTTGTCTAGTA
Alignments
lowQualScore : 11111 22222222222222222222 55555555555555555555555555555555555555555555555 1111 11111111 111 111111111 88888888888888888888888 22222 3333333333333333333333333333333333333 77777777777777777777777777777777777777 3333333 11111111111 4444444444444444444444
lowQualScore : 2 44444 44 3 77 33333333333333333333 33 2 2 4 2 2 33 4 2 2 2 33 2 11111111111111111111111111111111111111111111111 444 1 2 3333 66666666 66 2 2 2 2 2 2 66666 2 2 2 2 2 444 2 2 33 555 2 2 2 999 2 9999999 3 666666666 77777777777777777777777 5 22222 8888 6 6 7777777777777777777777777777777777777 44444 3 22 6666666 1 55555 0 2 88888888888888888888888888888888888888 66 3 5 4 5555555 0 3 3 3 1 0 2 888 33 33 0 44 77777 00000000000 44 8888888888888888888888 3 3
lowQualScore : . ..... .. . .. .................... .. . . . . . .. . . . . .. . ............................................... ... . . .... ........ .. . . . . . . ..... . . . . . ... . . .. ... . . . ... . ....... . ......... ....................... . ..... .... . . ..................................... ..... . .. ....... . ..... . . ...................................... .. . . . ....... . . . . . . . ... .. .. . .. ..... ........... .. ...................... . .
lowQualScore : 0 22222 66 1 33 22222222222222222222 44 4 2 4 2 2 11 7 4 7 7 77 7 22222222222222222222222222222222222222222222222 777 9 9 5555 33333333 99 5 5 4 4 5 5 00000 7 9 9 9 7 777 7 7 77 888 7 7 7 444 9 3333333 1 000000000 00000000000000000000000 7 44444 7777 5 7 5555555555555555555555555555555555555 55555 6 55 8888888 8 33333 8 5 88888888888888888888888888888888888888 99 9 0 4 4444444 6 3 1 1 1 5 7 222 00 77 2 22 77777 66666666666 22 3333333333333333333333 6 6
consensus : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A-------------NT----TTTT---AATTTTCCCTAAAAACATT-A--CGTCC------A-TGCAT-TTT-ACACAAAA-A-CACG-ATTGCTGA-TACGTAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAG-------CCA-GG---------TA-----------------------ACGTCACGTGA-TATA--T--AT-G-CATGAGGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC------------T-AG--TG--T-CG------C--TTAGG-CAAAGC-GTAA--TTCATTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAATTTCTAATCAAAGTT-GG-CACAA-ATC--ATCCTTGAGTTAAGGA--AATTCAA-----GTA---A-------ACTGTGCCCATGTT--CA-TTTATAT-------------GTAG-G-AGCGGAGGGTGTA
Reference ( family-1696 ) : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A-------------NT----TTTT---AATTTTCCCTAAAAACATT-A--CGTCC------A-TGCAT-TTT-ACACAAAA-A-CACG-ATTGCTGA-TACGTAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAG-------CCA-GG---------TA-----------------------ACGTCACGTGA-TATA--T--AT-G-CATGAGGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC------------T-AG--TG--T-CG------C--TTAGG-CAAAGC-GTAA-GTTCATTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAATTTCTAATCAAAGTT-GG-NNCAA-ATC--ATCCTTGAGTTAAGGA--AATTCAA-----GTA---A-------ACTGTGCCCATGTT--CA-TTTATAT------------TGTAG-G-AGCGGAGGGTGTA
gi|1 : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTACGGTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A-------------TT----TTTT---AATTTCCCCTAAAAACATT-A--CGTCT------A-TG-AT-TTT-GCACAAAA-T-CACG-ATTGCTGA-TACGTAT----AC-TATCTTTATTCAG-GAAGTTCTGTTA-GGTAA-TCTAACA---ATAACTTTTCAGGTTATATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAG-------CTA-GG---------TA-----------------------ACGTCATGTGA-TATA--T--AT-G-CATGAAGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AT-GAGTG--GC------GGGGGC-GGGGACCAA-----ACTAAGC---------------------------T-AG--CA--T-GG------C--TTAGG-CAAAAC-ACAATGTTCAGTTG-G-TGT-GCGTGGGAGAAACAGCAGGTCAATTTCTAATCAAAGTT-GG-ATCAA-ATT--ATCCTTGAGTTATGGA--AATTGAA-----GTA---A-------ACTGTGCACATGTT--CA-TTCATACAAAAAAAAAAAATGTAG-G-AGCGGAGGGTGTA
gi|10 : ATATA--CA-TGG--GT---------------------TTTTTG--CAGGC-TAATGCGCATGC--T-GGC-T--GG-CATAAGTGT-GGCCATTCT--GG-GAGTTATTA--------TT---------A-T-ACTGTTAATTTTTTCT----TTTT---A--TTTCCCTAAAAACATTAA--CATTC------A-AACAT-TTTAACAC-AAA-A-CAC
gi|11 : taaccatcttgttcaaaagttgttcttcttttaatattagaatgtacaccaccattacaatgccatttttggttatgtatgtatcgcatttgtatataaatgtaataagatggtacgtcttaaggcaatagatatatagtat---G-CGCTAGCATATA--CG-TCA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------TT---------G-T-A--------------T----TTTT---AATTTACCCTAAAAACATT-A--CATCT------A-TG-AT-TTT-ACAAAAAA-AACACG-ATTGCTGA-TACGTAT----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCAAACA---ATAAC------------ATGAACTCTT--TC--G-A-TACTT-TCC-GT-ATG-------CCA-GG---------TAATTTACATTCGGTTCTTTCCGTAACGTCATGTGC-TATAATT--AT-G-CATGAcact
gi|12 : cgctagaTTCAG-GAAGTTCTGTTG-AGCCA-TCTAAAA---ATAACTTTTCGAAT-T-ATGAACTCCT--TT--G-A-TACTT-T-ct
gi|12 : -CAT-GCGTGAAAGAAACAGCAAGTCGATTTTTAATCAAAGTG-GA-CATAA-ATC--ATCtcattggtggtcgttcaagtagtttacattcggctcttttcgtgaccgtgcgcgggtaaaattctgccttcgagaaatttccgtaacatcatacatatgaagtacgaatataaattccaaggttggcctggtggtatacttaggaaaacatgcgtgaaagaaacagcaagtcgatttttaatcaaagtggacataaatcatca
gi|13 : ttcaggaagttctgttgagccatctaaaaataacttttcgaattatgaactcctttgatacttttcattggtggtcgttcaagtagtttacattcggctcttttcgtgaccgtgcgcgggtaaaattctgccttcgagaaatttccgtaacatcatacatatgaagtacgaatataaattccaaggttggcctggtggtatacttaggaaaa-TAATGCGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--AG-GAGTT------------AT---------AATGA-------------AT----TCTT---AATTTTCCCTAAAAACATT-A--ACCCA------A-TACCA-TTT-GCACAAAA-A-CACG-ATTGCTGA-TACGGAC----AC-TATCTTTATTCAG-GGAGTTCTGTGA-AGTAA-TCTAAAG---ATAACTTTTCAGAT-A-TTGAACTCTT--TG--G-A-TTCTT------T-ATG-------CCA-GG---------TA-----------------------Aa
gi|14 : -CGGTAGCATATA--CG-T--------------------------------G--CA-----AATGCGCATGCT-T-GGA-T--GC-CAT-AGTGC-GG-CATTCT--GG-GA---------------TT---------A-A-A-------------AC----TGT----AATT--------AAA----------TCC------AATACAT-TTT-ACACAAAA-A-CACG-ATT-------ATGCAC----AC-TA----------G-GAGATTCTGTTA-AGTAC-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TT--A-A-TACTT-T-CAGT-AAG-------CCATGC---------TATTTCCATT---------------ACGTCACGTGG-TATA--CA-AT-G-TATtttacactcggttctttttgtgacagagtgcggctttcgagagttttcgtagattgtgcctatg
gi|15 : TAGCGCCCTCG---GGCGATAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGTGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A--------------T----TAAT---AATTTTCACTAAAAACATT-A--CGTTTGGCTAGA-TG-AT-TTT-ACACACAA-A-CACG-ATTGCTAA-TACGCAT----AC-TACCTTTATTCAG-GAAGTTCTGTTT-AGTAA-TCTAACAATTATAACTTTTCCGGT-A-ATGAACTCTT--TC--G-A-TACTT-C-CTGT-AAG-------CCA-GG---------TA-----------------------Atcataggatgaggtgcaattatacagacacgaggtaggcc
gi|16 : TTAGTCTGGTC-CCCGCCCCACCACTCTGTTATCACTCGTAACGA----------GTGATCA-----AA-GAGT---GT------AGGGGC-GGGGACCAG-----t
gi|16 : --------------------------A----------GTGATAA-----CA-GAGTG--GT------GGGG-C-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC------------T-AG--TGGTTATA------C--TTGGG-CAAAGC-GTAATGTTCATTTG-G-CGT-GCGTGGGAGAAACAGCAGGTCAATTTCTAATCAAAGTT-GG-CACAA-ATT--ATGCTTGAGTT-AGGA--AATTCAA-----GTA---A-------ACTGTACCCATGTT--CA-TTTA-----------------TAG-G-AGCGGGGAATGTgcatgaggtacgaatgctagtggttatacttgggcaaagcgtaatgttcatttggcgtgcgtgggagaaacagcaggtcaatttctaatcaaagttggcacaaattatgcttgagttaggaaattcaagtaaactgtacccatgttcatttataggagcggggaatgt
gi|17 : ctggtccccgcccctacactctttgatcactcgttacgGTGA-CATG--T--AC-CTCATGC--TTAGTCTGGTC-CCCGTC--------------------------CCTCT------TTGATCACCCGTAACGAGTG--ATCAGAAGAGAGGC-GGGAACCAG-----A
gi|17 : TCTGATCACTCGTT--------------------------ACGG-------GTGATCA-----AA-GAG--------------GGAC-GGGGACCAG-----ACTAAGCATGAGGTACA-----------------------TG--T-CA------C--TTCGG-CAAAGCCGTAA-GTTCATTTG-G-CGT-GCGTGGA-GAAACAGCAGGTCAATTTCTAACCAAAGTTAAA-CACAA-ATT--ATCCTT-AGTTAAGAATTAATTC-A-----GTA---A-------ACTGTGCCCATGT---------------------------TAA-G--GCGGAGGGTGttcggcaaagccgtaagttcatttggcgtgcgtggagaaacagcaggtcaatttctaaccaaagttaaacacaaattatccttagttaagaattaattcagtaaactgtgcccatgttaaggcggagggtgga
gi|18 : tctggttcccgcctctct------C--TTAGG-CAAAAC-GTAA-CTT---TTG-G-CGT-GCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNNN-NNN--NNNNNNNNNNNNNNNN--NNNNNNN-----NGA---A-------ATTGTGCCCATGTTGACAGTTCAT-T------------TATAG-G-AGCGGAGGGTga
gi|2 : tgaggtatacgaaataccgatacgaggtttgtttagtggttataTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-A--GC-CAT-AGTAC-AG-AATTCT--GG-GACTT------------CTCTAAAACTCG-T-A-------------AT----TTTT---AATTTT-CCTATAGACATT-A--AATCCA-----A-TGCAT-TTT-ACACAAAA-A-CACG-ATTGTTGA-TATCAAA----AC-TATCTTTATTCAG-GAAATTTTGTTA-AATAA-TCTAA-A---ATAAC-TTTCGGAT-A-ATGAGCTCTT--TA--G-A-TACTTCC-C-GT-AAG-------CCA-
gi|2 : AGGTACGAATAT------------T---------T-CG------AGGTT-GG-CCTAGT-GTTA----TATTTG-GACAAAGCGTGGAAGAAACAGCAGATCACTTTCCAATCAAAGTT-GG-CACAA-ATC--TTCTTTGGTTTAAAGA--AATTTAA-----GTA---A-------ACTGTGTTCATGTT--CA-TTTATA--------------GT-----AGCGGAGGGTGtttcattggcggtcgttcaaataatttatattcggttcctttcgtgacagtgcgcgggaaaaaatctgcctttgagagtttccgtaacgtaatgtgatggaaatacaggtacgaatatttcgaggttggcctagtgttatatttggacaaagcgtggaagaaacagcagatcactttccaatcaaagttggcacaaatcttctttggtttaaagaaatttaagtaaactgtgttcatgttcatttatagtagcggagggtg
gi|21 : ttttgcagctaatgcgcatgcttggcagccatagtacagaattctgggacttctctaaaactcgtaatttttaattttcctatagacattaaatccaatgcattttacacaaaaacacgattgttgatatcaaaactatctttattcaggaaattttgttaaataatctaaaataactttcggataatgagctctttagatacttcccgtaagccatttcattggcggtcgttcaaataatttatattcggttcctttcgtgacagtgcgcgggaaaaaatctgcctttgagagtttccgtaacgtaatgtgatggaaatac--------------------TTTTTT--CAG-C-TAATGCGCATGCTCT-TGC-G--GC-CAT-AGC----A-CATTCT--GG-GAGT--------------T---------A-T-A-------------TTAGAACTGT---AGTTT----AAAAAACATT-T--AATCCA-----A-TACAT-TTT-ACAC-AAA-A-TACG-ATTACTGA-TA
gi|22 : ggtG-G-CGT-GTGTGGGAGAAACAGGAGGTCAATTTCCAATCAAAGTT-GGCCACAC-ATT--ATCCTTGAGTTAAGGA--AATTCAA------TAT--A-------ACTGTG-CCATGTT--CA-TGCAT-T------------TGTAA-G-AGCGGAGGGTGTAgtta
gi|23 : ------A-TACAT-TTC-ACACGAAA-A-CACG-ATTGATGA-TACGTAC----AC-TATCTTTATTCGG-GAAGACCTGTAA-AGT---------A---ATAATTTTTCAGAT-A-ATGAACTCTT------G-A-TACTT-T-CTGT-AAG-------CTA-
gi|25 : ctaACA---AAAACTTTTCAGAT-A-ATGAACTCTT--TG--G-A-TACTT-T-CGGT-AAG-------TCA-GGACTTTTCCATA-----------------------AAGTCACGTGA-TGTA--T--A----CATAGGATTAGtgaa
gi|26 : --------------------------A----------GTGATCA-----AA-TAGTG--GC------GGGGGC--GGGACCAGGTCCTACTA---AT--GGTAC--ATGC------------T-AC--TG--A-CG------gtacaaatatacagatacgagg
gi|26 : t--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGCGGGGGACCAG-----cgttctgggagtgatcaaagagtggcgggggcgggggaccag
gi|27 : tcgtcagtagcatgtaccattagtaggacctggtcccgcccccgccactatttgatcactcgttctgggTG-G-CAT-GCGTTGAAGAAACAGCAGGTCA--TCC---------TT-GG--------------------GTTAAGAA--AATTTAG-----ATACGTATATATACATCGTGTCCATGTT--CA-TTTATA
gi|28 : aagcgttaCTAGCGCCCGAG---GGCGCTAGCATATC--CG-TCA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-A--TC-CAT-AGTGC-AG-CATTCT--GG-GAGTT------------
gi|29 : gatta-T-A-------------AT----TTTT---AAATTTCCCTAAAAACATT-A--AATCC------AATACAT-TTT-TCACAAAA-A-CGCG-ATTGCTGA-TACGTAC----AC-TATCag
gi|3 : gagttatatagaaaag--CA-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-AGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAATTATATTTTTA---CT---------G-T-A-------------AT----TTTT---AATTTTCCCTAAAA-CATT-A--AGTCC------AATACAT-TTT-ACACA-----------------GA-TACATAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AATAA-TCTAACA---ATAACTTTTCAGAT-A-ACGAACTCTT--TC--G-A-TACTT-TCC-GT-AAG-------CCA-GG---------TA-----------------------A
gi|3 : TTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAA----NNNNNNNNNNN-NN-NNNNN-NNN--NNNNNNNNNNNNNNNN--AATT------------------------TATGCCCATGTT--C------TGT------------GATAG-G-AGTGGAGGGTGTtttacattcggctctttctgcaacttcatgtgatatatgcacgatactgatacgaggtttagctagtggttatacttttggcgtgcgtggaagaaacagcaggtcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttatgcccatgttctgtgataggagtggagggtgt
gi|30 : cattagtgtttttgcagctaatgcgcatgcttagcggccatagtgcggcattctgggaattatatttttactgtaatttttaattttccctaaaacattaagtccaatacattttacacagatacatacactatctttattcaggaagttctgttaaataatctaacaataacttttcagataacgaactctttcgatactttccgtaagccaggtaatttacattcggctctttctgcaacttcatgtgatatatgcacgatactgatacgaggtttagctagtggttatactGCTAGTGCCTCGG---G-CGCTAGACTATA--CAATTA--GTGCTTTGGATGAGGTGGTTGGTTTTTTT--CAG-C-TAATGCGCATGCTCT-TGC-G--GC-CAT-AG
gi|31 : --------------------------A----------ATGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACT
gi|31 : --------------------------A----------ATGATCA-----AA-GAGTG--GC------GGGGAC-GGGGACCAG-----ACcgttctgggcagaacgaatgatcaaagagtggcggggacggggaccagac
gi|32 : agtctggtccccgcccccgccactctttgatcattcgttctgggcagaacgG-C-TAATGCGCATGCC-C-GG--GAAGC-CAT-ATTGC-GG-CATTCC--GG-GAGTTATATAGACTGAACT---------G-T-A-------------AT----TTTT----ATTTTCCT--AAAACATT-
gi|33 : ----------GTGATCA-----AA-GAGTG--GC------GGAAGC-GGGGACCA
gi|33 : --------------------------A----------GCGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----Aacgctccggcaggacgagcgatcaaagagtggcgggggcggggaccaga
gi|34 : tggtccccgcttccgccactctttgatcacacgctccggcaggacg--------------------------A----------ATGATCA-----AAAGAGTG--GC------GGGGCC-GGGGACCAG-----A
gi|35 : cgcccccgccactctttggattcattcatactggaaacg--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGAC
gi|36 : ggtcactctttcaacacttgttttgggggcccctaaacaGTC-CCCGCC--------------------------ACTCAAAATGAGTAGTCA-----AT-GAGTGTTG-------GGGGGC-TGGGACCAG-----ACTAAt
gi|37 : --------------------------A----------GTGATCA-----AT-GAGTG--G---------GGGC-GGGTACCAG-----ACTgggaaccatacc
gi|37 : ----------GTGATCA-----AA-GAGTG--GT-------GGGGT-GGGGACCAG-----cgttttgtgatcaaagagtggtggggtggggaccag
gi|38 : agtctggtacccgcccccactcattgatcactcgttttAGCGCCCTCG---G-TGCTAGCATATA--CG-TTA--GTA--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GCATAT-AG
gi|4 : AAAA-A-CACG-ATTGCTGA-TATGTTA----AC-TATATTTATTTAG-GGAGTTCTGTTA-AGTAA-TCTAAAA---ATA-----------------AACTCTT--TC--G-A-TACTT-T-CTGTCAAG-------CCA-
gi|4 : AAAGC-GT------CAT--G-G-CGT-GCGTAGGA-AAACAGCTGGTCAA-----------AGTT-GG-CACAA-ATC--ATC----------GGA--AATTCAACTCAAGTA---A-------ACTGTGTCCATGTT--CA-TTTATA--------------GTAGCG-AGtttcattggctgtgaagtaatttacattcgatgtaacagtgcgcgggaaaaattctgccttcaagtttttgtaatgtcatgttatgtataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatactgatttgtggaaagcgtcatggcgtgcgtaggaaaacagctggtcaaagttggcacaaatcatcggaaattcaactcaagtaaactgtgtccatgttcatttatagtagcgaggaga
gi|40 : aaaaacacgattgctgatatgttaactatatttatttagggagttctgttaagtaatctaaaaataaactctttcgatactttctgtcaagccatttcattggctgtgaagtaatttacattcgatgtaacagtgcgcgggaaaaattctgccttcaagtttttgtaatgtcatgttatgtataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatactgatttgtggTC--ATCCTTGGGTTAAGGA--AATTCAG-----GTA---A-------ATAGTGTTAATGTT--CA--TTATA-------------------G-AGCGGAGGGTGTAgaga
gi|41 : GCTAGCCTGGTC-CCCGCTCCCTGGGAACG---------------A----------ATGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAt
gi|42 : --------------------------A----------ATGATCA-----AA-GAGT--------------GGC-GGGGACCAG-----A
gi|43 : gtctggttcccgccggcattttgatcatatcgttcg--------------------------A----------GTGATCA-----AC-GAGTG--GT------GGGGGC-GGG
gi|44 : tggtcccccgccacttattcatcattcgttttgggGCTAGCGCGCTCGA--G-CGCTAGCATAAA--CG-TTA--GTA--------------------TTTTTG--CAG-C-TAATGCGCA
gi|45 : gttataTA---A-------AGTGTGCCAATGTT--CA-TTTA-----------------TAG-G-AGCGGAGGGTGT
gi|46 : ttaagaaatcatgtcagcttTGCT-T-GAC-G--GC-CAC-AGTGC-GG-TATTCT--GG-AAGTT------------AC---------A-T-A-------------G------------AATTTTC
gi|47 : --------------------------A----------GTGATCA-----AA-GAGT--------------GGC-GGGGACCAG-----ACTattatt
gi|48 : gttctgggagtaacccagaacaAAGTT-GG-TGCAA-ATT--GAACTTGAGTTATGGA--AATTCAA-----GTA---A-------ACTGTG
gi|49 : --------------------------A----------GTGATCA-----AG-GAGTG--GC------GGGGGC-GGGGACCAG-----GCT
gi|5 : aacaAT-ATT-ACATAAAA-C-AACGGATTTATGAATATGTAT----AC-TATCTTTCTTCTG-CAGTTCCTGTTA-AGTAA-TATAACA---ATTACTTTTCAGAT-A-ATTAACTCAT--T---G-A-TACTT-TCC-GT-AAG-------
gi|5 : TGAGGTGCAAATTC------------TTAG--TGGTTATA------C--TTGGG-CAAAGC-GT----------TGTG-CGT-GCG--GAAGAA-CAGC-GGTCAATTTCTAATGAAAGTT-GG-CACACTATCCTGTGCTTGATTAAAAGA--AATTCAA-----GTA---A-------ATTGTGCTCATGTT---A------AT------------TATAG-GAAGCGGAAGGTGTagcttagattttaccattcgggttttttcgtaacgtatgtgaatgcaatgtataatgcacatgtgaggtgcaaattcttagtggttatacttgggcaaagcgttgtgcgtgcggaagaacagcggtcaatttctaatgaaagttggcacactatcctgtgcttgattaaaagaaattcaagtaaattgtgctcatgttaattataggaagcggaaggtgt
gi|51 : atattacataaaacaacggatttatgaatatgtatactatctttcttctgcagttcctgttaagtaatataacaattacttttcagataattaactcattgatactttccgtaagagcttagattttaccattcgggttttttcgtaacgtatgtgaatgcaatgtataatgcacatg--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTA
gi|53 : cgGGTCAATTTCTAATGAAAGTT-GG-CACAT-ATC--
gi|6 : ------A-TGCAT-TTT-ACACAAAATA-CACG-ATTGCTGA-TACGTAC----AC-AATCTTTATTCAGAGGGGTTCTGTTA-AGTAA-TATAACA---ATAACTTTACAGGT-A-ATGATCCCGTAATCCAG-G-TAATT-TAC-AT-TTGGTTCTTTCC---G---------TA-----------------------ACGTCATGTGA-TGTA--TGCATAG-CATGAGGT
gi|6 : AGCATGAGGTACGAATACACCGACACAAATT-GGCCTA--T-TGGTTATAC--TTAGG-CAAAGT-GTAA----CATTTG-G-CGT-GCATGGAAGAAACAGCAGNNNNNNNNNNNNNNNNNNNN-NN-NNNNN-NNN--NNNNNNNNNNNNNNNN--NNNNNNN-----NNN---N-------NNNNNGTTCATGTT--CA-TTTATAacgaatacaccgacacaaattggcctattggttatacttaggcaaagtgtaacatttggcgtgcatggaagaaacagcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcatgttcatttataagagcg
gi|7 : atgcattttacacaaaatacacgattgctgatacgtacacaatctttattcagaggggttctgttaagtaatataacaataactttacaggtaatgatcccgtaatccaggtaatttacatttggttctttccgtaacgtcatgtgatgtatgcatTTG--CAG-C-TGATGCGCATGCT-TTGGC-G--GC-CAT-AGTGC-GG-CATTTT--TG-GAGTT-----------------------------------------TT----TTTT---AATTT--------------------TCC------C-TG-------------AAA-A-CACG-AT-------------C----AC-TATCTTTATTTAG-GGAGTTATGTTA-AGTAA-TGAAATA---ATAACTTATCAGAT-A-ATGTACTCTT--GC--A-G-TACTT-TCC-GT-AAG-------CCA-GG---------TA-----------------------AT-TTACGTagagcg
gi|7 : ------C--TTAAGACAAAGC-GTAG----CAGTTG-G-TGT-GCGTGGAAGAAACAGCAGGTCATTTTCTAATCAAAGTT-TG-GCCAttggttctttccgtttcgtcttgtgatgtatgcatagcatgaggtatagatatacctacatgagtttggcctagtagttatacttaagacaaagcgtagcagttggtgtgcgtggaagaaacagcaggtcattttctaatcaaagtttggccaca
gi|8 : ttgcagctgatgcgcatgctttggcggccatagtgcggcatttttggagttttttttaattttccctgaaaacacgatcactatctttatttagggagttatgttaagtaatgaaataataacttatcagataatgtactcttgcagtactttccgtaagccaggtaatttacgtttggttctttccgtttcgtcttgtgatgtatgcatagcatgaggtatagatatacctacatgagtttggcctagtagttataG-TTA--GTG--------------------TTTTTGGGCGG-CCTAATGCGCATGCT-T-GGCCG--GCACAT-AGTGCCGG-CATTCTTGGGCGAGTT------------CT---------A-T-A-------------CT----TTTTTATAATTTTTCCTAAAAAC-TT-AAACGTCT------A-T-TATCTTT-ACTTAACA-A-CACG-ATTGCTGA-TACGTATAGTAACGTATCTTTATTCAG-GAAGTTCTGGTACAGTAACTCTTAAA---AT-ACTTTTCAGGT-A-ATGAACTCTT--TC--GCATTACTT-C-C-GT--AG-------CCA-GG---------TAAGTTACATCGGTTCTTTCCGTA-ACGTCATGTGAGTATAATT--AT-G-CATGAca
gi|9 : GCTAGCGCTTTCG---GGCGCTAGCATATA--CT-TTA--GTG--------------------TTTTTG--CAG-C-CAATGCGCATGCT-T-GGC-A--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A--------------T----TTTT---AA-TTTCCCTAAAAATATT-A--ACTCCA-----A-TTCGT-ATT-GCACAAAA-A-CACG-GTTGCTGA-TACGTAA----AC-
gi|9 : aaatcagtcgatttttcagcatttgtcatgacaataaacaaagggaactatcaaaaattttcagaaatcattgttacGCTAGCGCCC--GAAAG-CGCTAGCATATATACG-TTAA-GTA--------------------TTTTTG--AAG-C-CAATGCGCATGCT-T-GGC-A--Gatatatacgttaagtatttttgaagccaatgcgcatgcttggcagta
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CGGATATTCTTTCTTGACATTTCGCGGGAATATGAACCATTTTATGGGTAGTCGTTCAAGTAATTTACATTCGGTTCTTTTNGTTAACTTGTAAACAATTCTGACTTCTCGAGTTTCCGCAACATCATGTGACGTACATGTATG
Unaligned ( gi|20 ): TATATATGTCTTGCACTTACTGTCTTGTTTAAAAGTTATTCTCCATTATTTGAATCTGCACACAACTATATAATGCCATTTTCATGTATTTAGATACAGACTGTATACACATTATGATAATGTGATAAGATGTATG
Unaligned ( gi|24 ): TATATAACCATCTTGTTTAAAAGTTGTTCTTTTAATATTTGAATTTGTATACCACCATACAATGTCATTTTTGTTTATGCACAGGTATGCATATTGTAACATGTATGCATATAG
Unaligned ( gi|39 ): TCGTTCAAGTAATACATTCGGTTCTTTTTGTGCAGCTCAGAAAACAATTCTGACTTCTCGAGTTCC
Unaligned ( gi|50 ): GCAGCATCGGCTTCCCAACTCTGCAACATCTTGAACAT
Unaligned ( gi|52 ): CGTATTAGTTTGTACTATCAATTTGTCTAGTA
Alignments
lowQualScore : 11111 22222222222222222222 55555555555555555555555555555555555555555555555 1111 11111111 111 111111111 88888888888888888888888 22222 3333333333333333333333333333333333333 77777777777777777777777777777777777777 33333333 11111111111 444444444444444444
lowQualScore : 2 44444 44 3 77 33333333333333333333 33 2 2 4 2 2 33 4 2 2 2 33 2 11111111111111111111111111111111111111111111111 444 1 2 3333 66666666 66 2 2 2 2 2 2 66666 2 2 2 2 2 444 2 2 33 555 2 2 2 999 2 9999999 3 666666666 77777777777777777777777 5 22222 8888 6 6 7777777777777777777777777777777777777 44444 3 22 6666666 1 55555 0 2 88888888888888888888888888888888888888 66 3 5 4 66666666 3 3 3 1 0 2 2 333 33 33 0 44 77777 00000000000 44 55 777777777777777777 3
lowQualScore : . ..... .. . .. .................... .. . . . . . .. . . . . .. . ............................................... ... . . .... ........ .. . . . . . . ..... . . . . . ... . . .. ... . . . ... . ....... . ......... ....................... . ..... .... . . ..................................... ..... . .. ....... . ..... . . ...................................... .. . . . ........ . . . . . . . ... .. .. . .. ..... ........... .. .. .................. .
lowQualScore : 0 22222 66 1 33 22222222222222222222 44 4 2 4 2 2 11 7 4 7 7 77 7 22222222222222222222222222222222222222222222222 777 9 9 5555 33333333 99 5 5 4 4 5 5 00000 7 9 9 9 7 777 7 7 77 888 7 7 7 444 9 3333333 1 000000000 00000000000000000000000 7 44444 7777 5 7 5555555555555555555555555555555555555 55555 6 55 8888888 8 33333 8 5 88888888888888888888888888888888888888 99 9 0 4 66666666 3 1 1 1 5 7 7 666 00 77 2 22 77777 66666666666 22 33 111111111111111111 3
consensus : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A-------------NT----TTTT---AATTTTCCCTAAAAACATT-A--CGTCC------A-TGCAT-TTT-ACACAAAA-A-CACG-ATTGCTGA-TACGTAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAG-------CCA-GG---------TA-----------------------ACGTCACGTGA-TATA--T--AT-G-CATGAGGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC------------T-AG--TG--T-CG------C--TTAGG-CAAAGC-GTAA-T--TCATTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAATTTCTAATCAAAG-TT-GG-C-ACAA-ATC--ATCCTTGAGTTAAGGA--AATTCAA-----GTA---A-------ACTGTGCCCATGTT--CA-TTTAT-------------A-G-TAG-GAGCGGAGGGTGTA
Reference ( family-1696 ) : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A-------------NT----TTTT---AATTTTCCCTAAAAACATT-A--CGTCC------A-TGCAT-TTT-ACACAAAA-A-CACG-ATTGCTGA-TACGTAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAG-------CCA-GG---------TA-----------------------ACGTCACGTGA-TATA--T--AT-G-CATGAGGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC------------T-AG--TG--T-CG------C--TTAGG-CAAAGC-GTAA-T--TCATTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAATTTCTAATCAAAG-TT-GG-C-ACAA-ATC--ATCCTTGAGTTAAGGA--AATTCAA-----GTA---A-------ACTGTGCCCATGTT--CA-TTTAT-------------ATG-TAG-GAGCGGAGGGTGTA
gi|1 : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTACGGTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A-------------TT----TTTT---AATTTCCCCTAAAAACATT-A--CGTCT------A-TG-AT-TTT-GCACAAAA-T-CACG-ATTGCTGA-TACGTAT----AC-TATCTTTATTCAG-GAAGTTCTGTTA-GGTAA-TCTAACA---ATAACTTTTCAGGTTATATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAG-------CTA-GG---------TA-----------------------ACGTCATGTGA-TATA--T--AT-G-CATGAAGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AT-GAGTG--GC------GGGGGC-GGGGACCAA-----ACTAAGC---------------------------T-AG--CA--T-GG------C--TTAGG-CAAAAC-ACAA-TGTTCAGTTG-G-TGT-GCGTGGGAGAAACAGCAGGTCAATTTCTAATCAAAG-TT-GG-A-TCAA-ATT--ATCCTTGAGTTATGGA--AATTGAA-----GTA---A-------ACTGTGCACATGTT--CA-TTCATACAAAAAAAAAAAATG-TAG-GAGCGGAGGGTGTA
gi|10 : ATATA--CA-TGG--GT---------------------TTTTTG--CAGGC-TAATGCGCATGC--T-GGC-T--GG-CATAAGTGT-GGCCATTCT--GG-GAGTTATTA--------TT---------A-T-ACTGTTAATTTTTTCT----TTTT---A--TTTCCCTAAAAACATTAA--CATTC------A-AACAT-TTTAACAC-AAA-A-CAC
gi|11 : taaccatcttgttcaaaagttgttcttcttttaatattagaatgtacaccaccattacaatgccatttttggttatgtatgtatcgcatttgtatataaatgtaataagatggtacgtcttaaggcaatagatatatagtat---G-CGCTAGCATATA--CG-TCA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------TT---------G-T-A--------------T----TTTT---AATTTACCCTAAAAACATT-A--CATCT------A-TG-AT-TTT-ACAAAAAA-AACACG-ATTGCTGA-TACGTAT----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCAAACA---ATAAC------------ATGAACTCTT--TC--G-A-TACTT-TCC-GT-ATG-------CCA-GG---------TAATTTACATTCGGTTCTTTCCGTAACGTCATGTGC-TATAATT--AT-G-CATGAcact
gi|12 : cgctagaTTCAG-GAAGTTCTGTTG-AGCCA-TCTAAAA---ATAACTTTTCGAAT-T-ATGAACTCCT--TT--G-A-TACTT-T-ct
gi|12 : -CAT-GCGTGAAAGAAACAGCAAGTCGATTTTTAATCAAAG-TG-GA-C-ATAA-ATC--ATCtcattggtggtcgttcaagtagtttacattcggctcttttcgtgaccgtgcgcgggtaaaattctgccttcgagaaatttccgtaacatcatacatatgaagtacgaatataaattccaaggttggcctggtggtatacttaggaaaacatgcgtgaaagaaacagcaagtcgatttttaatcaaagtggacataaatcatca
gi|13 : ttcaggaagttctgttgagccatctaaaaataacttttcgaattatgaactcctttgatacttttcattggtggtcgttcaagtagtttacattcggctcttttcgtgaccgtgcgcgggtaaaattctgccttcgagaaatttccgtaacatcatacatatgaagtacgaatataaattccaaggttggcctggtggtatacttaggaaaa-TAATGCGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--AG-GAGTT------------AT---------AATGA-------------AT----TCTT---AATTTTCCCTAAAAACATT-A--ACCCA------A-TACCA-TTT-GCACAAAA-A-CACG-ATTGCTGA-TACGGAC----AC-TATCTTTATTCAG-GGAGTTCTGTGA-AGTAA-TCTAAAG---ATAACTTTTCAGAT-A-TTGAACTCTT--TG--G-A-TTCTT------T-ATG-------CCA-GG---------TA-----------------------Aa
gi|14 : -CGGTAGCATATA--CG-T--------------------------------G--CA-----AATGCGCATGCT-T-GGA-T--GC-CAT-AGTGC-GG-CATTCT--GG-GA---------------TT---------A-A-A-------------AC----TGT----AATT--------AAA----------TCC------AATACAT-TTT-ACACAAAA-A-CACG-ATT-------ATGCAC----AC-TA----------G-GAGATTCTGTTA-AGTAC-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TT--A-A-TACTT-T-CAGT-AAG-------CCATGC---------TATTTCCATT---------------ACGTCACGTGG-TATA--CA-AT-G-TATtttacactcggttctttttgtgacagagtgcggctttcgagagttttcgtagattgtgcctatg
gi|15 : TAGCGCCCTCG---GGCGATAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGTGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A--------------T----TAAT---AATTTTCACTAAAAACATT-A--CGTTTGGCTAGA-TG-AT-TTT-ACACACAA-A-CACG-ATTGCTAA-TACGCAT----AC-TACCTTTATTCAG-GAAGTTCTGTTT-AGTAA-TCTAACAATTATAACTTTTCCGGT-A-ATGAACTCTT--TC--G-A-TACTT-C-CTGT-AAG-------CCA-GG---------TA-----------------------Atcataggatgaggtgcaattatacagacacgaggtaggcc
gi|16 : TTAGTCTGGTC-CCCGCCCCACCACTCTGTTATCACTCGTAACGA----------GTGATCA-----AA-GAGT---GT------AGGGGC-GGGGACCAG-----t
gi|16 : --------------------------A----------GTGATAA-----CA-GAGTG--GT------GGGG-C-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC------------T-AG--TGGTTATA------C--TTGGG-CAAAGC-GTAA-TGTTCATTTG-G-CGT-GCGTGGGAGAAACAGCAGGTCAATTTCTAATCAAAG-TT-GG-C-ACAA-ATT--ATGCTTGAGTT-AGGA--AATTCAA-----GTA---A-------ACTGTACCCATGTT--CA-TTTA------------------TAG-GAGCGGGGAATGTgcatgaggtacgaatgctagtggttatacttgggcaaagcgtaatgttcatttggcgtgcgtgggagaaacagcaggtcaatttctaatcaaagttggcacaaattatgcttgagttaggaaattcaagtaaactgtacccatgttcatttataggagcggggaatgt
gi|17 : ctggtccccgcccctacactctttgatcactcgttacgGTGA-CATG--T--AC-CTCATGC--TTAGTCTGGTC-CCCGTC--------------------------CCTCT------TTGATCACCCGTAACGAGTG--ATCAGAAGAGAGGC-GGGAACCAG-----A
gi|17 : TCTGATCACTCGTT--------------------------ACGG-------GTGATCA-----AA-GAG--------------GGAC-GGGGACCAG-----ACTAAGCATGAGGTACA-----------------------TG--T-CA------C--TTCGG-CAAAGCCGTAAGT--TCATTTG-G-CGT-GCGTGGA-GAAACAGCAGGTCAATTTCTAACCAAAG-TTAAA-C-ACAA-ATT--ATCCTT-AGTTAAGAATTAATTC-A-----GTA---A-------ACTGTGCCCATGT----------------------------TAA-G-GCGGAGGGTGttcggcaaagccgtaagttcatttggcgtgcgtggagaaacagcaggtcaatttctaaccaaagttaaacacaaattatccttagttaagaattaattcagtaaactgtgcccatgttaaggcggagggtgga
gi|18 : tctggttcccgcctctct------C--TTAGG-CAAAAC-GTAA-C--T--TTTG-G-CGT-GCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NN-N-NNNN-NNN--NNNNNNNNNNNNNNNN--NNNNNNN-----NGA---A-------ATTGTGCCCATGTTGACAGTTCAT-------------TTA-TAG-GAGCGGAGGGTga
gi|2 : tgaggtatacgaaataccgatacgaggtttgtttagtggttataTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-A--GC-CAT-AGTAC-AG-AATTCT--GG-GACTT------------CTCTAAAACTCG-T-A-------------AT----TTTT---AATTTT-CCTATAGACATT-A--AATCCA-----A-TGCAT-TTT-ACACAAAA-A-CACG-ATTGTTGA-TATCAAA----AC-TATCTTTATTCAG-GAAATTTTGTTA-AATAA-TCTAA-A---ATAAC-TTTCGGAT-A-ATGAGCTCTT--TA--G-A-TACTTCC-C-GT-AAG-------CCA-
gi|2 : AGGTACGAATAT------------T---------T-CG------AGGTT-GG-CCTAGT-GTTA-T----ATTTG-GACAAAGCGTGGAAGAAACAGCAGATCACTTTCCAATCAAAG-TT-GG-C-ACAA-ATC--TTCTTTGGTTTAAAGA--AATTTAA-----GTA---A-------ACTGTGTTCATGTT--CA-TTTAT-------------A-G-T----AGCGGAGGGTGtttcattggcggtcgttcaaataatttatattcggttcctttcgtgacagtgcgcgggaaaaaatctgcctttgagagtttccgtaacgtaatgtgatggaaatacaggtacgaatatttcgaggttggcctagtgttatatttggacaaagcgtggaagaaacagcagatcactttccaatcaaagttggcacaaatcttctttggtttaaagaaatttaagtaaactgtgttcatgttcatttatagtagcggagggtg
gi|21 : ttttgcagctaatgcgcatgcttggcagccatagtacagaattctgggacttctctaaaactcgtaatttttaattttcctatagacattaaatccaatgcattttacacaaaaacacgattgttgatatcaaaactatctttattcaggaaattttgttaaataatctaaaataactttcggataatgagctctttagatacttcccgtaagccatttcattggcggtcgttcaaataatttatattcggttcctttcgtgacagtgcgcgggaaaaaatctgcctttgagagtttccgtaacgtaatgtgatggaaatac--------------------TTTTTT--CAG-C-TAATGCGCATGCTCT-TGC-G--GC-CAT-AGC----A-CATTCT--GG-GAGT--------------T---------A-T-A-------------TTAGAACTGT---AGTTT----AAAAAACATT-T--AATCCA-----A-TACAT-TTT-ACAC-AAA-A-TACG-ATTACTGA-TA
gi|22 : ggtG-G-CGT-GTGTGGGAGAAACAGGAGGTCAATTTCCAATCAAAG-TT-GG-CCACAC-ATT--ATCCTTGAGTTAAGGA--AATTCAA------TAT--A-------ACTGTGCC-ATGTT--CA-TGCAT-------------TTG-TAA-GAGCGGAGGGTGTAgtta
gi|23 : ------A-TACAT-TTC-ACACGAAA-A-CACG-ATTGATGA-TACGTAC----AC-TATCTTTATTCGG-GAAGACCTGTAA-AGT---------A---ATAATTTTTCAGAT-A-ATGAACTCTT------G-A-TACTT-T-CTGT-AAG-------CTA-
gi|25 : ctaACA---AAAACTTTTCAGAT-A-ATGAACTCTT--TG--G-A-TACTT-T-CGGT-AAG-------TCA-GGACTTTTCCATA-----------------------AAGTCACGTGA-TGTA--T--A----CATAGGATTAGtgaa
gi|26 : --------------------------A----------GTGATCA-----AA-TAGTG--GC------GGGGGC--GGGACCAGGTCCTACTA---AT--GGTAC--ATGC------------T-AC--TG--A-CG------gtacaaatatacagatacgagg
gi|26 : t--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGCGGGGGACCAG-----cgttctgggagtgatcaaagagtggcgggggcgggggaccag
gi|27 : tcgtcagtagcatgtaccattagtaggacctggtcccgcccccgccactatttgatcactcgttctgggTG-G-CAT-GCGTTGAAGAAACAGCAGGTCA--TCC----------TT-GG---------------------GTTAAGAA--AATTTAG-----ATACGTATATATACATCGTGTCCATGTT--CA-TTTAT-------------A
gi|28 : aagcgttaCTAGCGCCCGAG---GGCGCTAGCATATC--CG-TCA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-A--TC-CAT-AGTGC-AG-CATTCT--GG-GAGTT------------
gi|29 : gatta-T-A-------------AT----TTTT---AAATTTCCCTAAAAACATT-A--AATCC------AATACAT-TTT-TCACAAAA-A-CGCG-ATTGCTGA-TACGTAC----AC-TATCag
gi|3 : gagttatatagaaaag--CA-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-AGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAATTATATTTTTA---CT---------G-T-A-------------AT----TTTT---AATTTTCCCTAAAA-CATT-A--AGTCC------AATACAT-TTT-ACACA-----------------GA-TACATAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AATAA-TCTAACA---ATAACTTTTCAGAT-A-ACGAACTCTT--TC--G-A-TACTT-TCC-GT-AAG-------CCA-GG---------TA-----------------------A
gi|3 : TTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAA----NNNNNNNNN-NN-NN-N-NNNN-NNN--NNNNNNNNNNNNNNNN--AATT------------------------TATGCCCATGTT--C------T-------------GTGATAG-GAGTGGAGGGTGTtttacattcggctctttctgcaacttcatgtgatatatgcacgatactgatacgaggtttagctagtggttatacttttggcgtgcgtggaagaaacagcaggtcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttatgcccatgttctgtgataggagtggagggtgt
gi|30 : cattagtgtttttgcagctaatgcgcatgcttagcggccatagtgcggcattctgggaattatatttttactgtaatttttaattttccctaaaacattaagtccaatacattttacacagatacatacactatctttattcaggaagttctgttaaataatctaacaataacttttcagataacgaactctttcgatactttccgtaagccaggtaatttacattcggctctttctgcaacttcatgtgatatatgcacgatactgatacgaggtttagctagtggttatactGCTAGTGCCTCGG---G-CGCTAGACTATA--CAATTA--GTGCTTTGGATGAGGTGGTTGGTTTTTTT--CAG-C-TAATGCGCATGCTCT-TGC-G--GC-CAT-AG
gi|31 : --------------------------A----------ATGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACT
gi|31 : --------------------------A----------ATGATCA-----AA-GAGTG--GC------GGGGAC-GGGGACCAG-----ACcgttctgggcagaacgaatgatcaaagagtggcggggacggggaccagac
gi|32 : agtctggtccccgcccccgccactctttgatcattcgttctgggcagaacgG-C-TAATGCGCATGCC-C-GG--GAAGC-CAT-ATTGC-GG-CATTCC--GG-GAGTTATATAGACTGAACT---------G-T-A-------------AT----TTTT----ATTTTCCT--AAAACATT-
gi|33 : ----------GTGATCA-----AA-GAGTG--GC------GGAAGC-GGGGACCA
gi|33 : --------------------------A----------GCGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----Aacgctccggcaggacgagcgatcaaagagtggcgggggcggggaccaga
gi|34 : tggtccccgcttccgccactctttgatcacacgctccggcaggacg--------------------------A----------ATGATCA-----AAAGAGTG--GC------GGGGCC-GGGGACCAG-----A
gi|35 : cgcccccgccactctttggattcattcatactggaaacg--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGAC
gi|36 : ggtcactctttcaacacttgttttgggggcccctaaacaGTC-CCCGCC--------------------------ACTCAAAATGAGTAGTCA-----AT-GAGTGTTG-------GGGGGC-TGGGACCAG-----ACTAAt
gi|37 : --------------------------A----------GTGATCA-----AT-GAGTG--G---------GGGC-GGGTACCAG-----ACTgggaaccatacc
gi|37 : ----------GTGATCA-----AA-GAGTG--GT-------GGGGT-GGGGACCAG-----cgttttgtgatcaaagagtggtggggtggggaccag
gi|38 : agtctggtacccgcccccactcattgatcactcgttttAGCGCCCTCG---G-TGCTAGCATATA--CG-TTA--GTA--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GCATAT-AG
gi|4 : AAAA-A-CACG-ATTGCTGA-TATGTTA----AC-TATATTTATTTAG-GGAGTTCTGTTA-AGTAA-TCTAAAA---ATA-----------------AACTCTT--TC--G-A-TACTT-T-CTGTCAAG-------CCA-
gi|4 : AAAGC-GT-------CAT--G-G-CGT-GCGTAGGA-AAACAGCTGGTCAA-----------AG-TT-GG-C-ACAA-ATC--ATC----------GGA--AATTCAACTCAAGTA---A-------ACTGTGTCCATGTT--CA-TTTAT-------------A-G-TAGCGAGtttcattggctgtgaagtaatttacattcgatgtaacagtgcgcgggaaaaattctgccttcaagtttttgtaatgtcatgttatgtataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatactgatttgtggaaagcgtcatggcgtgcgtaggaaaacagctggtcaaagttggcacaaatcatcggaaattcaactcaagtaaactgtgtccatgttcatttatagtagcgaggaga
gi|40 : aaaaacacgattgctgatatgttaactatatttatttagggagttctgttaagtaatctaaaaataaactctttcgatactttctgtcaagccatttcattggctgtgaagtaatttacattcgatgtaacagtgcgcgggaaaaattctgccttcaagtttttgtaatgtcatgttatgtataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatactgatttgtggTC--ATCCTTGGGTTAAGGA--AATTCAG-----GTA---A-------ATAGTGTTAATGTT--CA--TTAT-------------A-------GAGCGGAGGGTGTAgaga
gi|41 : GCTAGCCTGGTC-CCCGCTCCCTGGGAACG---------------A----------ATGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAt
gi|42 : --------------------------A----------ATGATCA-----AA-GAGT--------------GGC-GGGGACCAG-----A
gi|43 : gtctggttcccgccggcattttgatcatatcgttcg--------------------------A----------GTGATCA-----AC-GAGTG--GT------GGGGGC-GGG
gi|44 : tggtcccccgccacttattcatcattcgttttgggGCTAGCGCGCTCGA--G-CGCTAGCATAAA--CG-TTA--GTA--------------------TTTTTG--CAG-C-TAATGCGCA
gi|45 : gttataTA---A-------AGTGTGCCAATGTT--CA-TTTA------------------TAG-GAGCGGAGGGTGT
gi|46 : ttaagaaatcatgtcagcttTGCT-T-GAC-G--GC-CAC-AGTGC-GG-TATTCT--GG-AAGTT------------AC---------A-T-A-------------G------------AATTTTC
gi|47 : --------------------------A----------GTGATCA-----AA-GAGT--------------GGC-GGGGACCAG-----ACTattatt
gi|48 : gttctgggagtaacccagaacaAAG-TT-GG-T-GCAA-ATT--GAACTTGAGTTATGGA--AATTCAA-----GTA---A-------ACTGTG
gi|49 : --------------------------A----------GTGATCA-----AG-GAGTG--GC------GGGGGC-GGGGACCAG-----GCT
gi|5 : aacaAT-ATT-ACATAAAA-C-AACGGATTTATGAATATGTAT----AC-TATCTTTCTTCTG-CAGTTCCTGTTA-AGTAA-TATAACA---ATTACTTTTCAGAT-A-ATTAACTCAT--T---G-A-TACTT-TCC-GT-AAG-------
gi|5 : TGAGGTGCAAATTC------------TTAG--TGGTTATA------C--TTGGG-CAAAGC-GT-----------TGTG-CGT-GCG--GAAGAA-CAGC-GGTCAATTTCTAATGAAAG-TT-GG-C-ACACTATCCTGTGCTTGATTAAAAGA--AATTCAA-----GTA---A-------ATTGTGCTCATGTT--AA--TTAT-------------A----GG-AAGCGGAAGGTGTagcttagattttaccattcgggttttttcgtaacgtatgtgaatgcaatgtataatgcacatgtgaggtgcaaattcttagtggttatacttgggcaaagcgttgtgcgtgcggaagaacagcggtcaatttctaatgaaagttggcacactatcctgtgcttgattaaaagaaattcaagtaaattgtgctcatgttaattataggaagcggaaggtgt
gi|51 : atattacataaaacaacggatttatgaatatgtatactatctttcttctgcagttcctgttaagtaatataacaattacttttcagataattaactcattgatactttccgtaagagcttagattttaccattcgggttttttcgtaacgtatgtgaatgcaatgtataatgcacatg--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTA
gi|53 : cgGGTCAATTTCTAATGAAAG-TT-GG-C-ACAT-ATC--
gi|6 : ------A-TGCAT-TTT-ACACAAAATA-CACG-ATTGCTGA-TACGTAC----AC-AATCTTTATTCAGAGGGGTTCTGTTA-AGTAA-TATAACA---ATAACTTTACAGGT-A-ATGATCCCGTAATCCAG-G-TAATT-TAC-AT-TTGGTTCTTTCC---G---------TA-----------------------ACGTCATGTGA-TGTA--TGCATAG-CATGAGGT
gi|6 : AGCATGAGGTACGAATACACCGACACAAATT-GGCCTA--T-TGGTTATAC--TTAGG-CAAAGT-GTAA-----CATTTG-G-CGT-GCATGGAAGAAACAGCAGNNNNNNNNNNNNNNNNNN-NN-NN-N-NNNN-NNN--NNNNNNNNNNNNNNNN--NNNNNNN-----NNN---N-------NNNNNGTTCATGTT--CA-TTTA------------------TAA-GAGCGacgaatacaccgacacaaattggcctattggttatacttaggcaaagtgtaacatttggcgtgcatggaagaaacagcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcatgttcatttataagagcg
gi|7 : atgcattttacacaaaatacacgattgctgatacgtacacaatctttattcagaggggttctgttaagtaatataacaataactttacaggtaatgatcccgtaatccaggtaatttacatttggttctttccgtaacgtcatgtgatgtatgcatTTG--CAG-C-TGATGCGCATGCT-TTGGC-G--GC-CAT-AGTGC-GG-CATTTT--TG-GAGTT-----------------------------------------TT----TTTT---AATTT--------------------TCC------C-TG-------------AAA-A-CACG-AT-------------C----AC-TATCTTTATTTAG-GGAGTTATGTTA-AGTAA-TGAAATA---ATAACTTATCAGAT-A-ATGTACTCTT--GC--A-G-TACTT-TCC-GT-AAG-------CCA-GG---------TA-----------------------AT-TTACGT
gi|7 : ------C--TTAAGACAAAGC-GTAG-----CAGTTG-G-TGT-GCGTGGAAGAAACAGCAGGTCATTTTCTAATCAAAGTTT-GGCC-ACAttggttctttccgtttcgtcttgtgatgtatgcatagcatgaggtatagatatacctacatgagtttggcctagtagttatacttaagacaaagcgtagcagttggtgtgcgtggaagaaacagcaggtcattttctaatcaaagtttggccaca
gi|8 : ttgcagctgatgcgcatgctttggcggccatagtgcggcatttttggagttttttttaattttccctgaaaacacgatcactatctttatttagggagttatgttaagtaatgaaataataacttatcagataatgtactcttgcagtactttccgtaagccaggtaatttacgtttggttctttccgtttcgtcttgtgatgtatgcatagcatgaggtatagatatacctacatgagtttggcctagtagttataG-TTA--GTG--------------------TTTTTGGGCGG-CCTAATGCGCATGCT-T-GGCCG--GCACAT-AGTGCCGG-CATTCTTGGGCGAGTT------------CT---------A-T-A-------------CT----TTTTTATAATTTTTCCTAAAAAC-TT-AAACGTCT------A-T-TATCTTT-ACTTAACA-A-CACG-ATTGCTGA-TACGTATAGTAACGTATCTTTATTCAG-GAAGTTCTGGTACAGTAACTCTTAAA---AT-ACTTTTCAGGT-A-ATGAACTCTT--TC--GCATTACTT-C-C-GT--AG-------CCA-GG---------TAAGTTACATCGGTTCTTTCCGTA-ACGTCATGTGAGTATAATT--AT-G-CATGA
gi|9 : GCTAGCGCTTTCG---GGCGCTAGCATATA--CT-TTA--GTG--------------------TTTTTG--CAG-C-CAATGCGCATGCT-T-GGC-A--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A--------------T----TTTT---AA-TTTCCCTAAAAATATT-A--ACTCCA-----A-TTCGT-ATT-GCACAAAA-A-CACG-GTTGCTGA-TACGTAA----AC-
gi|9 : aaatcagtcgatttttcagcatttgtcatgacaataaacaaagggaactatcaaaaattttcagaaatcattgttacGCTAGCGCCC--GAAAG-CGCTAGCATATATACG-TTAA-GTA--------------------TTTTTG--AAG-C-CAATGCGCATGCT-T-GGC-A--Gatatatacgttaagtatttttgaagccaatgcgcatgcttggcagta
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CGGATATTCTTTCTTGACATTTCGCGGGAATATGAACCATTTTATGGGTAGTCGTTCAAGTAATTTACATTCGGTTCTTTTNGTTAACTTGTAAACAATTCTGACTTCTCGAGTTTCCGCAACATCATGTGACGTACATGTATG
Unaligned ( gi|20 ): TATATATGTCTTGCACTTACTGTCTTGTTTAAAAGTTATTCTCCATTATTTGAATCTGCACACAACTATATAATGCCATTTTCATGTATTTAGATACAGACTGTATACACATTATGATAATGTGATAAGATGTATG
Unaligned ( gi|24 ): TATATAACCATCTTGTTTAAAAGTTGTTCTTTTAATATTTGAATTTGTATACCACCATACAATGTCATTTTTGTTTATGCACAGGTATGCATATTGTAACATGTATGCATATAG
Unaligned ( gi|39 ): TCGTTCAAGTAATACATTCGGTTCTTTTTGTGCAGCTCAGAAAACAATTCTGACTTCTCGAGTTCC
Unaligned ( gi|50 ): GCAGCATCGGCTTCCCAACTCTGCAACATCTTGAACAT
Unaligned ( gi|52 ): CGTATTAGTTTGTACTATCAATTTGTCTAGTA
Alignments
lowQualScore : 11111 22222222222222222222 55555555555555555555555555555555555555555555555 1111 11111111 111 111111111 88888888888888888888888 22222 3333333333333333333333333333333333333 77777777777777777777777777777777777777 33333333 11111111111 1111111 333333333333333333
lowQualScore : 2 44444 44 3 77 33333333333333333333 33 2 2 4 2 2 33 4 2 2 2 33 2 11111111111111111111111111111111111111111111111 444 1 2 3333 66666666 66 2 2 2 2 2 2 66666 2 2 2 2 2 444 2 2 33 555 2 2 2 999 2 9999999 3 666666666 77777777777777777777777 5 22222 8888 6 6 7777777777777777777777777777777777777 44444 3 22 6666666 1 55555 0 2 88888888888888888888888888888888888888 66 3 5 4 66666666 3 3 3 1 0 2 8 33 33 0 44 888888 00000000000 0000000 2 888888888888888888 3
lowQualScore : . ..... .. . .. .................... .. . . . . . .. . . . . .. . ............................................... ... . . .... ........ .. . . . . . . ..... . . . . . ... . . .. ... . . . ... . ....... . ......... ....................... . ..... .... . . ..................................... ..... . .. ....... . ..... . . ...................................... .. . . . ........ . . . . . . . .. .. . .. ...... ........... ....... . .................. .
lowQualScore : 0 22222 66 1 33 22222222222222222222 44 4 2 4 2 2 11 7 4 7 7 77 7 22222222222222222222222222222222222222222222222 777 9 9 5555 33333333 99 5 5 4 4 5 5 00000 7 9 9 9 7 777 7 7 77 888 7 7 7 444 9 3333333 1 000000000 00000000000000000000000 7 44444 7777 5 7 5555555555555555555555555555555555555 55555 6 55 8888888 8 33333 8 5 88888888888888888888888888888888888888 99 9 0 4 66666666 3 1 1 1 5 7 0 00 77 2 22 222222 66666666666 0000000 2 444444444444444444 3
consensus : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A-------------NT----TTTT---AATTTTCCCTAAAAACATT-A--CGTCC------A-TGCAT-TTT-ACACAAAA-A-CACG-ATTGCTGA-TACGTAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAG-------CCA-GG---------TA-----------------------ACGTCACGTGA-TATA--T--AT-G-CATGAGGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC------------T-AG--TG--T-CG------C--TTAGG-CAAAGC-GTAA-T--TCATTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAATTTCTAATCAAAG-TTGG-CACAA-ATC--ATCCTTGAGTTAAGGA--AATTCAA-----GTA---A-------ACTGTGCCCAT-------GTTCATTTA-TA--------------GTAG-GAGCGGAGGGTGTA
Reference ( family-1696 ) : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A-------------NT----TTTT---AATTTTCCCTAAAAACATT-A--CGTCC------A-TGCAT-TTT-ACACAAAA-A-CACG-ATTGCTGA-TACGTAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAG-------CCA-GG---------TA-----------------------ACGTCACGTGA-TATA--T--AT-G-CATGAGGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC------------T-AG--TG--T-CG------C--TTAGG-CAAAGC-GTAA-T--TCATTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAATTTCTAATCAAAG-TTGG-CACAA-ATC--ATCCTTGAGTTAAGGA--AATTCAA-----GTA---A-------ACTGTGCCCAT-------GTTCATTTA-TA--------------GTAG-GAGCGGAGGGTGTA
gi|1 : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTACGGTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A-------------TT----TTTT---AATTTCCCCTAAAAACATT-A--CGTCT------A-TG-AT-TTT-GCACAAAA-T-CACG-ATTGCTGA-TACGTAT----AC-TATCTTTATTCAG-GAAGTTCTGTTA-GGTAA-TCTAACA---ATAACTTTTCAGGTTATATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAG-------CTA-GG---------TA-----------------------ACGTCATGTGA-TATA--T--AT-G-CATGAAGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AT-GAGTG--GC------GGGGGC-GGGGACCAA-----ACTAAGC---------------------------T-AG--CA--T-GG------C--TTAGG-CAAAAC-ACAA-TGTTCAGTTG-G-TGT-GCGTGGGAGAAACAGCAGGTCAATTTCTAATCAAAG-TTGG-ATCAA-ATT--ATCCTTGAGTTATGGA--AATTGAA-----GTA---A-------ACTGTGCACAT-------GTTCATTCA-TACAAAAAAAAAAAATGTAG-GAGCGGAGGGTGTA
gi|10 : ATATA--CA-TGG--GT---------------------TTTTTG--CAGGC-TAATGCGCATGC--T-GGC-T--GG-CATAAGTGT-GGCCATTCT--GG-GAGTTATTA--------TT---------A-T-ACTGTTAATTTTTTCT----TTTT---A--TTTCCCTAAAAACATTAA--CATTC------A-AACAT-TTTAACAC-AAA-A-CAC
gi|11 : taaccatcttgttcaaaagttgttcttcttttaatattagaatgtacaccaccattacaatgccatttttggttatgtatgtatcgcatttgtatataaatgtaataagatggtacgtcttaaggcaatagatatatagtat---G-CGCTAGCATATA--CG-TCA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------TT---------G-T-A--------------T----TTTT---AATTTACCCTAAAAACATT-A--CATCT------A-TG-AT-TTT-ACAAAAAA-AACACG-ATTGCTGA-TACGTAT----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCAAACA---ATAAC------------ATGAACTCTT--TC--G-A-TACTT-TCC-GT-ATG-------CCA-GG---------TAATTTACATTCGGTTCTTTCCGTAACGTCATGTGC-TATAATT--AT-G-CATGAcact
gi|12 : cgctagaTTCAG-GAAGTTCTGTTG-AGCCA-TCTAAAA---ATAACTTTTCGAAT-T-ATGAACTCCT--TT--G-A-TACTT-T-ct
gi|12 : -CAT-GCGTGAAAGAAACAGCAAGTCGATTTTTAATCAAAG-TGGA-CATAA-ATC--ATCtcattggtggtcgttcaagtagtttacattcggctcttttcgtgaccgtgcgcgggtaaaattctgccttcgagaaatttccgtaacatcatacatatgaagtacgaatataaattccaaggttggcctggtggtatacttaggaaaacatgcgtgaaagaaacagcaagtcgatttttaatcaaagtggacataaatcatca
gi|13 : ttcaggaagttctgttgagccatctaaaaataacttttcgaattatgaactcctttgatacttttcattggtggtcgttcaagtagtttacattcggctcttttcgtgaccgtgcgcgggtaaaattctgccttcgagaaatttccgtaacatcatacatatgaagtacgaatataaattccaaggttggcctggtggtatacttaggaaaa-TAATGCGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--AG-GAGTT------------AT---------AATGA-------------AT----TCTT---AATTTTCCCTAAAAACATT-A--ACCCA------A-TACCA-TTT-GCACAAAA-A-CACG-ATTGCTGA-TACGGAC----AC-TATCTTTATTCAG-GGAGTTCTGTGA-AGTAA-TCTAAAG---ATAACTTTTCAGAT-A-TTGAACTCTT--TG--G-A-TTCTT------T-ATG-------CCA-GG---------TA-----------------------Aa
gi|14 : -CGGTAGCATATA--CG-T--------------------------------G--CA-----AATGCGCATGCT-T-GGA-T--GC-CAT-AGTGC-GG-CATTCT--GG-GA---------------TT---------A-A-A-------------AC----TGT----AATT--------AAA----------TCC------AATACAT-TTT-ACACAAAA-A-CACG-ATT-------ATGCAC----AC-TA----------G-GAGATTCTGTTA-AGTAC-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TT--A-A-TACTT-T-CAGT-AAG-------CCATGC---------TATTTCCATT---------------ACGTCACGTGG-TATA--CA-AT-G-TATtttacactcggttctttttgtgacagagtgcggctttcgagagttttcgtagattgtgcctatg
gi|15 : TAGCGCCCTCG---GGCGATAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGTGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A--------------T----TAAT---AATTTTCACTAAAAACATT-A--CGTTTGGCTAGA-TG-AT-TTT-ACACACAA-A-CACG-ATTGCTAA-TACGCAT----AC-TACCTTTATTCAG-GAAGTTCTGTTT-AGTAA-TCTAACAATTATAACTTTTCCGGT-A-ATGAACTCTT--TC--G-A-TACTT-C-CTGT-AAG-------CCA-GG---------TA-----------------------Atcataggatgaggtgcaattatacagacacgaggtaggcc
gi|16 : TTAGTCTGGTC-CCCGCCCCACCACTCTGTTATCACTCGTAACGA----------GTGATCA-----AA-GAGT---GT------AGGGGC-GGGGACCAG-----t
gi|16 : --------------------------A----------GTGATAA-----CA-GAGTG--GT------GGGG-C-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC------------T-AG--TGGTTATA------C--TTGGG-CAAAGC-GTAA-TGTTCATTTG-G-CGT-GCGTGGGAGAAACAGCAGGTCAATTTCTAATCAAAG-TTGG-CACAA-ATT--ATGCTTGAGTT-AGGA--AATTCAA-----GTA---A-------ACTGTACCCAT-------GTTCATTTA------------------TAG-GAGCGGGGAATGTgcatgaggtacgaatgctagtggttatacttgggcaaagcgtaatgttcatttggcgtgcgtgggagaaacagcaggtcaatttctaatcaaagttggcacaaattatgcttgagttaggaaattcaagtaaactgtacccatgttcatttataggagcggggaatgt
gi|17 : ctggtccccgcccctacactctttgatcactcgttacgGTGA-CATG--T--AC-CTCATGC--TTAGTCTGGTC-CCCGTC--------------------------CCTCT------TTGATCACCCGTAACGAGTG--ATCAGAAGAGAGGC-GGGAACCAG-----A
gi|17 : TCTGATCACTCGTT--------------------------ACGG-------GTGATCA-----AA-GAG--------------GGAC-GGGGACCAG-----ACTAAGCATGAGGTACA-----------------------TG--T-CA------C--TTCGG-CAAAGCCGTAAGT--TCATTTG-G-CGT-GCGTGGA-GAAACAGCAGGTCAATTTCTAACCAAAG-TTAAACACAA-ATT--ATCCTT-AGTTAAGAATTAATTCA------GTA---A-------ACTGTGCCCAT-------GTT-------------------------AA-G-GCGGAGGGTGttcggcaaagccgtaagttcatttggcgtgcgtggagaaacagcaggtcaatttctaaccaaagttaaacacaaattatccttagttaagaattaattcagtaaactgtgcccatgttaaggcggagggtgga
gi|18 : tctggttcccgcctctct------C--TTAGG-CAAAAC-GTAA-C--T--TTTG-G-CGT-GCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNN-NNN--NNNNNNNNNNNNNNNN--NNNNNNN-----NGA---A-------ATTGTGCCCATGTTGACAGTTCATTTA------------------TAG-GAGCGGAGGGTga
gi|2 : tgaggtatacgaaataccgatacgaggtttgtttagtggttataTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-A--GC-CAT-AGTAC-AG-AATTCT--GG-GACTT------------CTCTAAAACTCG-T-A-------------AT----TTTT---AATTTT-CCTATAGACATT-A--AATCCA-----A-TGCAT-TTT-ACACAAAA-A-CACG-ATTGTTGA-TATCAAA----AC-TATCTTTATTCAG-GAAATTTTGTTA-AATAA-TCTAA-A---ATAAC-TTTCGGAT-A-ATGAGCTCTT--TA--G-A-TACTTCC-C-GT-AAG-------CCA-
gi|2 : AGGTACGAATAT------------T---------T-CG------AGGTT-GG-CCTAGT-GTTA-T----ATTTG-GACAAAGCGTGGAAGAAACAGCAGATCACTTTCCAATCAAAG-TTGG-CACAA-ATC--TTCTTTGGTTTAAAGA--AATTTAA-----GTA---A-------ACTGTGTTCAT-------GTTCATTTA-TA--------------GT----AGCGGAGGGTGtttcattggcggtcgttcaaataatttatattcggttcctttcgtgacagtgcgcgggaaaaaatctgcctttgagagtttccgtaacgtaatgtgatggaaatacaggtacgaatatttcgaggttggcctagtgttatatttggacaaagcgtggaagaaacagcagatcactttccaatcaaagttggcacaaatcttctttggtttaaagaaatttaagtaaactgtgttcatgttcatttatagtagcggagggtg
gi|21 : ttttgcagctaatgcgcatgcttggcagccatagtacagaattctgggacttctctaaaactcgtaatttttaattttcctatagacattaaatccaatgcattttacacaaaaacacgattgttgatatcaaaactatctttattcaggaaattttgttaaataatctaaaataactttcggataatgagctctttagatacttcccgtaagccatttcattggcggtcgttcaaataatttatattcggttcctttcgtgacagtgcgcgggaaaaaatctgcctttgagagtttccgtaacgtaatgtgatggaaatac--------------------TTTTTT--CAG-C-TAATGCGCATGCTCT-TGC-G--GC-CAT-AGC----A-CATTCT--GG-GAGT--------------T---------A-T-A-------------TTAGAACTGT---AGTTT----AAAAAACATT-T--AATCCA-----A-TACAT-TTT-ACAC-AAA-A-TACG-ATTACTGA-TA
gi|22 : ggtG-G-CGT-GTGTGGGAGAAACAGGAGGTCAATTTCCAATCAAAG-TTGGCCACAC-ATT--ATCCTTGAGTTAAGGA--AATTCAA------TAT--A-------ACTGTG-CCAT-------GTTCATGCATTT--------------GTAA-GAGCGGAGGGTGTAgtta
gi|23 : ------A-TACAT-TTC-ACACGAAA-A-CACG-ATTGATGA-TACGTAC----AC-TATCTTTATTCGG-GAAGACCTGTAA-AGT---------A---ATAATTTTTCAGAT-A-ATGAACTCTT------G-A-TACTT-T-CTGT-AAG-------CTA-
gi|25 : ctaACA---AAAACTTTTCAGAT-A-ATGAACTCTT--TG--G-A-TACTT-T-CGGT-AAG-------TCA-GGACTTTTCCATA-----------------------AAGTCACGTGA-TGTA--T--A----CATAGGATTAGtgaa
gi|26 : --------------------------A----------GTGATCA-----AA-TAGTG--GC------GGGGGC--GGGACCAGGTCCTACTA---AT--GGTAC--ATGC------------T-AC--TG--A-CG------gtacaaatatacagatacgagg
gi|26 : t--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGCGGGGGACCAG-----cgttctgggagtgatcaaagagtggcgggggcgggggaccag
gi|27 : tcgtcagtagcatgtaccattagtaggacctggtcccgcccccgccactatttgatcactcgttctgggTG-G-CAT-GCGTTGAAGAAACAGCAGGTCA--TCC----------TTGG--------------------GTTAAGAA--AATTTAG-----ATACGTATATATACATCGTGTCCAT-------GTTCATTTA-TA--------------
gi|28 : aagcgttaCTAGCGCCCGAG---GGCGCTAGCATATC--CG-TCA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-A--TC-CAT-AGTGC-AG-CATTCT--GG-GAGTT------------
gi|29 : gatta-T-A-------------AT----TTTT---AAATTTCCCTAAAAACATT-A--AATCC------AATACAT-TTT-TCACAAAA-A-CGCG-ATTGCTGA-TACGTAC----AC-TATCag
gi|3 : gagttatatagaaaag--CA-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-AGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAATTATATTTTTA---CT---------G-T-A-------------AT----TTTT---AATTTTCCCTAAAA-CATT-A--AGTCC------AATACAT-TTT-ACACA-----------------GA-TACATAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AATAA-TCTAACA---ATAACTTTTCAGAT-A-ACGAACTCTT--TC--G-A-TACTT-TCC-GT-AAG-------CCA-GG---------TA-----------------------A
gi|3 : TTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAA----NNNNNNNNN-NNNN-NNNNN-NNN--NNNNNNNNNNNNNNNN--AATT------------------------TATGCCCAT-------GTTC---TG-TG--------------ATAG-GAGTGGAGGGTGTtttacattcggctctttctgcaacttcatgtgatatatgcacgatactgatacgaggtttagctagtggttatacttttggcgtgcgtggaagaaacagcaggtcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttatgcccatgttctgtgataggagtggagggtgt
gi|30 : cattagtgtttttgcagctaatgcgcatgcttagcggccatagtgcggcattctgggaattatatttttactgtaatttttaattttccctaaaacattaagtccaatacattttacacagatacatacactatctttattcaggaagttctgttaaataatctaacaataacttttcagataacgaactctttcgatactttccgtaagccaggtaatttacattcggctctttctgcaacttcatgtgatatatgcacgatactgatacgaggtttagctagtggttatactGCTAGTGCCTCGG---G-CGCTAGACTATA--CAATTA--GTGCTTTGGATGAGGTGGTTGGTTTTTTT--CAG-C-TAATGCGCATGCTCT-TGC-G--GC-CAT-AG
gi|31 : --------------------------A----------ATGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACT
gi|31 : --------------------------A----------ATGATCA-----AA-GAGTG--GC------GGGGAC-GGGGACCAG-----ACcgttctgggcagaacgaatgatcaaagagtggcggggacggggaccagac
gi|32 : agtctggtccccgcccccgccactctttgatcattcgttctgggcagaacgG-C-TAATGCGCATGCC-C-GG--GAAGC-CAT-ATTGC-GG-CATTCC--GG-GAGTTATATAGACTGAACT---------G-T-A-------------AT----TTTT----ATTTTCCT--AAAACATT-
gi|33 : ----------GTGATCA-----AA-GAGTG--GC------GGAAGC-GGGGACCA
gi|33 : --------------------------A----------GCGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----Aacgctccggcaggacgagcgatcaaagagtggcgggggcggggaccaga
gi|34 : tggtccccgcttccgccactctttgatcacacgctccggcaggacg--------------------------A----------ATGATCA-----AAAGAGTG--GC------GGGGCC-GGGGACCAG-----A
gi|35 : cgcccccgccactctttggattcattcatactggaaacg--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGAC
gi|36 : ggtcactctttcaacacttgttttgggggcccctaaacaGTC-CCCGCC--------------------------ACTCAAAATGAGTAGTCA-----AT-GAGTGTTG-------GGGGGC-TGGGACCAG-----ACTAAt
gi|37 : --------------------------A----------GTGATCA-----AT-GAGTG--G---------GGGC-GGGTACCAG-----ACTgggaaccatacc
gi|37 : ----------GTGATCA-----AA-GAGTG--GT-------GGGGT-GGGGACCAG-----cgttttgtgatcaaagagtggtggggtggggaccag
gi|38 : agtctggtacccgcccccactcattgatcactcgttttAGCGCCCTCG---G-TGCTAGCATATA--CG-TTA--GTA--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GCATAT-AG
gi|4 : AAAA-A-CACG-ATTGCTGA-TATGTTA----AC-TATATTTATTTAG-GGAGTTCTGTTA-AGTAA-TCTAAAA---ATA-----------------AACTCTT--TC--G-A-TACTT-T-CTGTCAAG-------CCA-
gi|4 : AAAGC-GT-------CAT--G-G-CGT-GCGTAGGA-AAACAGCTGGTCAA-----------AG-TTGG-CACAA-ATC--ATC----------GGA--AATTCAACTCAAGTA---A-------ACTGTGTCCAT-------GTTCATTTA-TA--------------GTAGCGAGtttcattggctgtgaagtaatttacattcgatgtaacagtgcgcgggaaaaattctgccttcaagtttttgtaatgtcatgttatgtataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatactgatttgtggaaagcgtcatggcgtgcgtaggaaaacagctggtcaaagttggcacaaatcatcggaaattcaactcaagtaaactgtgtccatgttcatttatagtagcgaggaga
gi|40 : aaaaacacgattgctgatatgttaactatatttatttagggagttctgttaagtaatctaaaaataaactctttcgatactttctgtcaagccatttcattggctgtgaagtaatttacattcgatgtaacagtgcgcgggaaaaattctgccttcaagtttttgtaatgtcatgttatgtataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatactgatttgtggTC--ATCCTTGGGTTAAGGA--AATTCAG-----GTA---A-------ATAGTGTTAAT-------GTTCA-TTA-TA-------------------GAGCGGAGGGTGTAgaga
gi|41 : GCTAGCCTGGTC-CCCGCTCCCTGGGAACG---------------A----------ATGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAt
gi|42 : --------------------------A----------ATGATCA-----AA-GAGT--------------GGC-GGGGACCAG-----A
gi|43 : gtctggttcccgccggcattttgatcatatcgttcg--------------------------A----------GTGATCA-----AC-GAGTG--GT------GGGGGC-GGG
gi|44 : tggtcccccgccacttattcatcattcgttttgggGCTAGCGCGCTCGA--G-CGCTAGCATAAA--CG-TTA--GTA--------------------TTTTTG--CAG-C-TAATGCGCA
gi|45 : gttataTA---A-------AGTGTGCCAAT-------GTTCATTTA------------------TAG-GAGCGGAGGGTGT
gi|46 : ttaagaaatcatgtcagcttTGCT-T-GAC-G--GC-CAC-AGTGC-GG-TATTCT--GG-AAGTT------------AC---------A-T-A-------------G------------AATTTTC
gi|47 : --------------------------A----------GTGATCA-----AA-GAGT--------------GGC-GGGGACCAG-----ACTattatt
gi|48 : gttctgggagtaacccagaacaAAG-TTGG-TGCAA-ATT--GAACTTGAGTTATGGA--AATTCAA-----GTA---A-------ACTGTG
gi|49 : --------------------------A----------GTGATCA-----AG-GAGTG--GC------GGGGGC-GGGGACCAG-----GCT
gi|5 : aacaAT-ATT-ACATAAAA-C-AACGGATTTATGAATATGTAT----AC-TATCTTTCTTCTG-CAGTTCCTGTTA-AGTAA-TATAACA---ATTACTTTTCAGAT-A-ATTAACTCAT--T---G-A-TACTT-TCC-GT-AAG-------
gi|5 : TGAGGTGCAAATTC------------TTAG--TGGTTATA------C--TTGGG-CAAAGC-GT-----------TGTG-CGT-GCG--GAAGAA-CAGC-GGTCAATTTCTAATGAAAG-TTGG-CACACTATCCTGTGCTTGATTAAAAGA--AATTCAA-----GTA---A-------ATTGTGCTCAT-------GTTAA-TTA-TA--------------G--G-AAGCGGAAGGTGTagcttagattttaccattcgggttttttcgtaacgtatgtgaatgcaatgtataatgcacatgtgaggtgcaaattcttagtggttatacttgggcaaagcgttgtgcgtgcggaagaacagcggtcaatttctaatgaaagttggcacactatcctgtgcttgattaaaagaaattcaagtaaattgtgctcatgttaattataggaagcggaaggtgt
gi|51 : atattacataaaacaacggatttatgaatatgtatactatctttcttctgcagttcctgttaagtaatataacaattacttttcagataattaactcattgatactttccgtaagagcttagattttaccattcgggttttttcgtaacgtatgtgaatgcaatgtataatgcacatg--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTA
gi|53 : cgGGTCAATTTCTAATGAAAG-TTGG-CACAT-ATC--
gi|6 : ------A-TGCAT-TTT-ACACAAAATA-CACG-ATTGCTGA-TACGTAC----AC-AATCTTTATTCAGAGGGGTTCTGTTA-AGTAA-TATAACA---ATAACTTTACAGGT-A-ATGATCCCGTAATCCAG-G-TAATT-TAC-AT-TTGGTTCTTTCC---G---------TA-----------------------ACGTCATGTGA-TGTA--TGCATAG-CATGAGGT
gi|6 : AGCATGAGGTACGAATACACCGACACAAATT-GGCCTA--T-TGGTTATAC--TTAGG-CAAAGT-GTAA-----CATTTG-G-CGT-GCATGGAAGAAACAGCAGNNNNNNNNNNNNNNNNNN-NNNN-NNNNN-NNN--NNNNNNNNNNNNNNNN--NNNNNNN-----NNN---N-------NNNNNGTTCAT-------GTTCATTTA------------------TAA-GAGCGacgaatacaccgacacaaattggcctattggttatacttaggcaaagtgtaacatttggcgtgcatggaagaaacagcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcatgttcatttataagagcg
gi|7 : atgcattttacacaaaatacacgattgctgatacgtacacaatctttattcagaggggttctgttaagtaatataacaataactttacaggtaatgatcccgtaatccaggtaatttacatttggttctttccgtaacgtcatgtgatgtatgcatTTG--CAG-C-TGATGCGCATGCT-TTGGC-G--GC-CAT-AGTGC-GG-CATTTT--TG-GAGTT-----------------------------------------TT----TTTT---AATTT--------------------TCC------C-TG-------------AAA-A-CACG-AT-------------C----AC-TATCTTTATTTAG-GGAGTTATGTTA-AGTAA-TGAAATA---ATAACTTATCAGAT-A-ATGTACTCTT--GC--A-G-TACTT-TCC-GT-AAG-------CCA-GG---------TA-----------------------AT-TTACGT
gi|7 : ------C--TTAAGACAAAGC-GTAG-----CAGTTG-G-TGT-GCGTGGAAGAAACAGCAGGTCATTTTCTAATCAAAGTTTGGCCACAttggttctttccgtttcgtcttgtgatgtatgcatagcatgaggtatagatatacctacatgagtttggcctagtagttatacttaagacaaagcgtagcagttggtgtgcgtggaagaaacagcaggtcattttctaatcaaagtttggccaca
gi|8 : ttgcagctgatgcgcatgctttggcggccatagtgcggcatttttggagttttttttaattttccctgaaaacacgatcactatctttatttagggagttatgttaagtaatgaaataataacttatcagataatgtactcttgcagtactttccgtaagccaggtaatttacgtttggttctttccgtttcgtcttgtgatgtatgcatagcatgaggtatagatatacctacatgagtttggcctagtagttataG-TTA--GTG--------------------TTTTTGGGCGG-CCTAATGCGCATGCT-T-GGCCG--GCACAT-AGTGCCGG-CATTCTTGGGCGAGTT------------CT---------A-T-A-------------CT----TTTTTATAATTTTTCCTAAAAAC-TT-AAACGTCT------A-T-TATCTTT-ACTTAACA-A-CACG-ATTGCTGA-TACGTATAGTAACGTATCTTTATTCAG-GAAGTTCTGGTACAGTAACTCTTAAA---AT-ACTTTTCAGGT-A-ATGAACTCTT--TC--GCATTACTT-C-C-GT--AG-------CCA-GG---------TAAGTTACATCGGTTCTTTCCGTA-ACGTCATGTGAGTATAATT--AT-G-CATGA
gi|9 : GCTAGCGCTTTCG---GGCGCTAGCATATA--CT-TTA--GTG--------------------TTTTTG--CAG-C-CAATGCGCATGCT-T-GGC-A--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A--------------T----TTTT---AA-TTTCCCTAAAAATATT-A--ACTCCA-----A-TTCGT-ATT-GCACAAAA-A-CACG-GTTGCTGA-TACGTAA----AC-
gi|9 : aaatcagtcgatttttcagcatttgtcatgacaataaacaaagggaactatcaaaaattttcagaaatcattgttacGCTAGCGCCC--GAAAG-CGCTAGCATATATACG-TTAA-GTA--------------------TTTTTG--AAG-C-CAATGCGCATGCT-T-GGC-A--Gatatatacgttaagtatttttgaagccaatgcgcatgcttggcagta
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CGGATATTCTTTCTTGACATTTCGCGGGAATATGAACCATTTTATGGGTAGTCGTTCAAGTAATTTACATTCGGTTCTTTTNGTTAACTTGTAAACAATTCTGACTTCTCGAGTTTCCGCAACATCATGTGACGTACATGTATG
Unaligned ( gi|20 ): TATATATGTCTTGCACTTACTGTCTTGTTTAAAAGTTATTCTCCATTATTTGAATCTGCACACAACTATATAATGCCATTTTCATGTATTTAGATACAGACTGTATACACATTATGATAATGTGATAAGATGTATG
Unaligned ( gi|24 ): TATATAACCATCTTGTTTAAAAGTTGTTCTTTTAATATTTGAATTTGTATACCACCATACAATGTCATTTTTGTTTATGCACAGGTATGCATATTGTAACATGTATGCATATAG
Unaligned ( gi|39 ): TCGTTCAAGTAATACATTCGGTTCTTTTTGTGCAGCTCAGAAAACAATTCTGACTTCTCGAGTTCC
Unaligned ( gi|50 ): GCAGCATCGGCTTCCCAACTCTGCAACATCTTGAACAT
Unaligned ( gi|52 ): CGTATTAGTTTGTACTATCAATTTGTCTAGTA
Alignments
lowQualScore : 11111 22222222222222222222 55555555555555555555555555555555555555555555555 1111 11111111 111 111111111 88888888888888888888888 22222 3333333333333333333333333333333333333 77777777777777777777777777777777777777 33333333 11111111111 1111111 333333333333333333
lowQualScore : 2 44444 44 3 77 33333333333333333333 33 2 2 4 2 2 33 4 2 2 2 33 2 11111111111111111111111111111111111111111111111 444 1 2 3333 66666666 66 2 2 2 2 2 2 66666 2 2 2 2 2 444 2 2 33 555 2 2 2 999 2 9999999 3 666666666 77777777777777777777777 5 22222 8888 6 6 7777777777777777777777777777777777777 44444 3 22 6666666 1 55555 0 2 88888888888888888888888888888888888888 66 3 5 4 66666666 3 3 3 1 0 2 8 33 33 0 44 888888 00000000000 0000000 2 888888888888888888 3
lowQualScore : . ..... .. . .. .................... .. . . . . . .. . . . . .. . ............................................... ... . . .... ........ .. . . . . . . ..... . . . . . ... . . .. ... . . . ... . ....... . ......... ....................... . ..... .... . . ..................................... ..... . .. ....... . ..... . . ...................................... .. . . . ........ . . . . . . . .. .. . .. ...... ........... ....... . .................. .
lowQualScore : 0 22222 66 1 33 22222222222222222222 44 4 2 4 2 2 11 7 4 7 7 77 7 22222222222222222222222222222222222222222222222 777 9 9 5555 33333333 99 5 5 4 4 5 5 00000 7 9 9 9 7 777 7 7 77 888 7 7 7 444 9 3333333 1 000000000 00000000000000000000000 7 44444 7777 5 7 5555555555555555555555555555555555555 55555 6 55 8888888 8 33333 8 5 88888888888888888888888888888888888888 99 9 0 4 66666666 3 1 1 1 5 7 0 00 77 2 22 222222 66666666666 0000000 2 444444444444444444 3
consensus : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A-------------NT----TTTT---AATTTTCCCTAAAAACATT-A--CGTCC------A-TGCAT-TTT-ACACAAAA-A-CACG-ATTGCTGA-TACGTAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAG-------CCA-GG---------TA-----------------------ACGTCACGTGA-TATA--T--AT-G-CATGAGGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC------------T-AG--TG--T-CG------C--TTAGG-CAAAGC-GTAA-T--TCATTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAATTTCTAATCAAAG-TTGG-CACAA-ATC--ATCCTTGAGTTAAGGA--AATTCAA-----GTA---A-------ACTGTGCCCAT-------GTTCATTTA-TA--------------GTAG-GAGCGGAGGGTGTA
Reference ( family-1696 ) : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A-------------NT----TTTT---AATTTTCCCTAAAAACATT-A--CGTCC------A-TGCAT-TTT-ACACAAAA-A-CACG-ATTGCTGA-TACGTAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAG-------CCA-GG---------TA-----------------------ACGTCACGTGA-TATA--T--AT-G-CATGAGGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC------------T-AG--TG--T-CG------C--TTAGG-CAAAGC-GTAA-T--TCATTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAATTTCTAATCAAAG-TTGG-CACAA-ATC--ATCCTTGAGTTAAGGA--AATTCAA-----GTA---A-------ACTGTGCCCAT-------GTTCATTTA-TA--------------GTAG-GAGCGGAGGGTGTA
gi|1 : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTACGGTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A-------------TT----TTTT---AATTTCCCCTAAAAACATT-A--CGTCT------A-TG-AT-TTT-GCACAAAA-T-CACG-ATTGCTGA-TACGTAT----AC-TATCTTTATTCAG-GAAGTTCTGTTA-GGTAA-TCTAACA---ATAACTTTTCAGGTTATATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAG-------CTA-GG---------TA-----------------------ACGTCATGTGA-TATA--T--AT-G-CATGAAGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AT-GAGTG--GC------GGGGGC-GGGGACCAA-----ACTAAGC---------------------------T-AG--CA--T-GG------C--TTAGG-CAAAAC-ACAA-TGTTCAGTTG-G-TGT-GCGTGGGAGAAACAGCAGGTCAATTTCTAATCAAAG-TTGG-ATCAA-ATT--ATCCTTGAGTTATGGA--AATTGAA-----GTA---A-------ACTGTGCACAT-------GTTCATTCA-TACAAAAAAAAAAAATGTAG-GAGCGGAGGGTGTA
gi|10 : ATATA--CA-TGG--GT---------------------TTTTTG--CAGGC-TAATGCGCATGC--T-GGC-T--GG-CATAAGTGT-GGCCATTCT--GG-GAGTTATTA--------TT---------A-T-ACTGTTAATTTTTTCT----TTTT---A--TTTCCCTAAAAACATTAA--CATTC------A-AACAT-TTTAACAC-AAA-A-CAC
gi|11 : taaccatcttgttcaaaagttgttcttcttttaatattagaatgtacaccaccattacaatgccatttttggttatgtatgtatcgcatttgtatataaatgtaataagatggtacgtcttaaggcaatagatatatagtat---G-CGCTAGCATATA--CG-TCA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------TT---------G-T-A--------------T----TTTT---AATTTACCCTAAAAACATT-A--CATCT------A-TG-AT-TTT-ACAAAAAA-AACACG-ATTGCTGA-TACGTAT----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCAAACA---ATAAC------------ATGAACTCTT--TC--G-A-TACTT-TCC-GT-ATG-------CCA-GG---------TAATTTACATTCGGTTCTTTCCGTAACGTCATGTGC-TATAATT--AT-G-CATGAcact
gi|12 : cgctagaTTCAG-GAAGTTCTGTTG-AGCCA-TCTAAAA---ATAACTTTTCGAAT-T-ATGAACTCCT--TT--G-A-TACTT-T-ct
gi|12 : -CAT-GCGTGAAAGAAACAGCAAGTCGATTTTTAATCAAAG-TGGA-CATAA-ATC--ATCtcattggtggtcgttcaagtagtttacattcggctcttttcgtgaccgtgcgcgggtaaaattctgccttcgagaaatttccgtaacatcatacatatgaagtacgaatataaattccaaggttggcctggtggtatacttaggaaaacatgcgtgaaagaaacagcaagtcgatttttaatcaaagtggacataaatcatca
gi|13 : ttcaggaagttctgttgagccatctaaaaataacttttcgaattatgaactcctttgatacttttcattggtggtcgttcaagtagtttacattcggctcttttcgtgaccgtgcgcgggtaaaattctgccttcgagaaatttccgtaacatcatacatatgaagtacgaatataaattccaaggttggcctggtggtatacttaggaaaa-TAATGCGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--AG-GAGTT------------AT---------AATGA-------------AT----TCTT---AATTTTCCCTAAAAACATT-A--ACCCA------A-TACCA-TTT-GCACAAAA-A-CACG-ATTGCTGA-TACGGAC----AC-TATCTTTATTCAG-GGAGTTCTGTGA-AGTAA-TCTAAAG---ATAACTTTTCAGAT-A-TTGAACTCTT--TG--G-A-TTCTT------T-ATG-------CCA-GG---------TA-----------------------Aa
gi|14 : -CGGTAGCATATA--CG-T--------------------------------G--CA-----AATGCGCATGCT-T-GGA-T--GC-CAT-AGTGC-GG-CATTCT--GG-GA---------------TT---------A-A-A-------------AC----TGT----AATT--------AAA----------TCC------AATACAT-TTT-ACACAAAA-A-CACG-ATT-------ATGCAC----AC-TA----------G-GAGATTCTGTTA-AGTAC-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TT--A-A-TACTT-T-CAGT-AAG-------CCATGC---------TATTTCCATT---------------ACGTCACGTGG-TATA--CA-AT-G-TATtttacactcggttctttttgtgacagagtgcggctttcgagagttttcgtagattgtgcctatg
gi|15 : TAGCGCCCTCG---GGCGATAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGTGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A--------------T----TAAT---AATTTTCACTAAAAACATT-A--CGTTTGGCTAGA-TG-AT-TTT-ACACACAA-A-CACG-ATTGCTAA-TACGCAT----AC-TACCTTTATTCAG-GAAGTTCTGTTT-AGTAA-TCTAACAATTATAACTTTTCCGGT-A-ATGAACTCTT--TC--G-A-TACTT-C-CTGT-AAG-------CCA-GG---------TA-----------------------Atcataggatgaggtgcaattatacagacacgaggtaggcc
gi|16 : TTAGTCTGGTC-CCCGCCCCACCACTCTGTTATCACTCGTAACGA----------GTGATCA-----AA-GAGT---GT------AGGGGC-GGGGACCAG-----t
gi|16 : --------------------------A----------GTGATAA-----CA-GAGTG--GT------GGGG-C-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC------------T-AG--TGGTTATA------C--TTGGG-CAAAGC-GTAA-TGTTCATTTG-G-CGT-GCGTGGGAGAAACAGCAGGTCAATTTCTAATCAAAG-TTGG-CACAA-ATT--ATGCTTGAGTT-AGGA--AATTCAA-----GTA---A-------ACTGTACCCAT-------GTTCATTTA------------------TAG-GAGCGGGGAATGTgcatgaggtacgaatgctagtggttatacttgggcaaagcgtaatgttcatttggcgtgcgtgggagaaacagcaggtcaatttctaatcaaagttggcacaaattatgcttgagttaggaaattcaagtaaactgtacccatgttcatttataggagcggggaatgt
gi|17 : ctggtccccgcccctacactctttgatcactcgttacgGTGA-CATG--T--AC-CTCATGC--TTAGTCTGGTC-CCCGTC--------------------------CCTCT------TTGATCACCCGTAACGAGTG--ATCAGAAGAGAGGC-GGGAACCAG-----A
gi|17 : TCTGATCACTCGTT--------------------------ACGG-------GTGATCA-----AA-GAG--------------GGAC-GGGGACCAG-----ACTAAGCATGAGGTACA-----------------------TG--T-CA------C--TTCGG-CAAAGCCGTAAGT--TCATTTG-G-CGT-GCGTGGA-GAAACAGCAGGTCAATTTCTAACCAAAG-TTAAACACAA-ATT--ATCCTT-AGTTAAGAATTAATTCA------GTA---A-------ACTGTGCCCAT-------GTT-------------------------AA-G-GCGGAGGGTGttcggcaaagccgtaagttcatttggcgtgcgtggagaaacagcaggtcaatttctaaccaaagttaaacacaaattatccttagttaagaattaattcagtaaactgtgcccatgttaaggcggagggtgga
gi|18 : tctggttcccgcctctct------C--TTAGG-CAAAAC-GTAA-C--T--TTTG-G-CGT-GCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNN-NNN--NNNNNNNNNNNNNNNN--NNNNNNN-----NGA---A-------ATTGTGCCCATGTTGACAGTTCATTTA------------------TAG-GAGCGGAGGGTga
gi|2 : tgaggtatacgaaataccgatacgaggtttgtttagtggttataTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-A--GC-CAT-AGTAC-AG-AATTCT--GG-GACTT------------CTCTAAAACTCG-T-A-------------AT----TTTT---AATTTT-CCTATAGACATT-A--AATCCA-----A-TGCAT-TTT-ACACAAAA-A-CACG-ATTGTTGA-TATCAAA----AC-TATCTTTATTCAG-GAAATTTTGTTA-AATAA-TCTAA-A---ATAAC-TTTCGGAT-A-ATGAGCTCTT--TA--G-A-TACTTCC-C-GT-AAG-------CCA-
gi|2 : AGGTACGAATAT------------T---------T-CG------AGGTT-GG-CCTAGT-GTTA-T----ATTTG-GACAAAGCGTGGAAGAAACAGCAGATCACTTTCCAATCAAAG-TTGG-CACAA-ATC--TTCTTTGGTTTAAAGA--AATTTAA-----GTA---A-------ACTGTGTTCAT-------GTTCATTTA-TA--------------GT----AGCGGAGGGTGtttcattggcggtcgttcaaataatttatattcggttcctttcgtgacagtgcgcgggaaaaaatctgcctttgagagtttccgtaacgtaatgtgatggaaatacaggtacgaatatttcgaggttggcctagtgttatatttggacaaagcgtggaagaaacagcagatcactttccaatcaaagttggcacaaatcttctttggtttaaagaaatttaagtaaactgtgttcatgttcatttatagtagcggagggtg
gi|21 : ttttgcagctaatgcgcatgcttggcagccatagtacagaattctgggacttctctaaaactcgtaatttttaattttcctatagacattaaatccaatgcattttacacaaaaacacgattgttgatatcaaaactatctttattcaggaaattttgttaaataatctaaaataactttcggataatgagctctttagatacttcccgtaagccatttcattggcggtcgttcaaataatttatattcggttcctttcgtgacagtgcgcgggaaaaaatctgcctttgagagtttccgtaacgtaatgtgatggaaatac--------------------TTTTTT--CAG-C-TAATGCGCATGCTCT-TGC-G--GC-CAT-AGC----A-CATTCT--GG-GAGT--------------T---------A-T-A-------------TTAGAACTGT---AGTTT----AAAAAACATT-T--AATCCA-----A-TACAT-TTT-ACAC-AAA-A-TACG-ATTACTGA-TA
gi|22 : ggtG-G-CGT-GTGTGGGAGAAACAGGAGGTCAATTTCCAATCAAAG-TTGGCCACAC-ATT--ATCCTTGAGTTAAGGA--AATTCAA------TAT--A-------ACTGTG-CCAT-------GTTCATGCATTT--------------GTAA-GAGCGGAGGGTGTAgtta
gi|23 : ------A-TACAT-TTC-ACACGAAA-A-CACG-ATTGATGA-TACGTAC----AC-TATCTTTATTCGG-GAAGACCTGTAA-AGT---------A---ATAATTTTTCAGAT-A-ATGAACTCTT------G-A-TACTT-T-CTGT-AAG-------CTA-
gi|25 : ctaACA---AAAACTTTTCAGAT-A-ATGAACTCTT--TG--G-A-TACTT-T-CGGT-AAG-------TCA-GGACTTTTCCATA-----------------------AAGTCACGTGA-TGTA--T--A----CATAGGATTAGtgaa
gi|26 : --------------------------A----------GTGATCA-----AA-TAGTG--GC------GGGGGC--GGGACCAGGTCCTACTA---AT--GGTAC--ATGC------------T-AC--TG--A-CG------gtacaaatatacagatacgagg
gi|26 : t--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGCGGGGGACCAG-----cgttctgggagtgatcaaagagtggcgggggcgggggaccag
gi|27 : tcgtcagtagcatgtaccattagtaggacctggtcccgcccccgccactatttgatcactcgttctgggTG-G-CAT-GCGTTGAAGAAACAGCAGGTCA--TCC----------TTGG--------------------GTTAAGAA--AATTTAG-----ATACGTATATATACATCGTGTCCAT-------GTTCATTTA-TA--------------
gi|28 : aagcgttaCTAGCGCCCGAG---GGCGCTAGCATATC--CG-TCA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-A--TC-CAT-AGTGC-AG-CATTCT--GG-GAGTT------------
gi|29 : gatta-T-A-------------AT----TTTT---AAATTTCCCTAAAAACATT-A--AATCC------AATACAT-TTT-TCACAAAA-A-CGCG-ATTGCTGA-TACGTAC----AC-TATCag
gi|3 : gagttatatagaaaag--CA-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-AGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAATTATATTTTTA---CT---------G-T-A-------------AT----TTTT---AATTTTCCCTAAAA-CATT-A--AGTCC------AATACAT-TTT-ACACA-----------------GA-TACATAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AATAA-TCTAACA---ATAACTTTTCAGAT-A-ACGAACTCTT--TC--G-A-TACTT-TCC-GT-AAG-------CCA-GG---------TA-----------------------A
gi|3 : TTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAA----NNNNNNNNN-NNNN-NNNNN-NNN--NNNNNNNNNNNNNNNN--AATT------------------------TATGCCCAT-------GTTC---TG-TG--------------ATAG-GAGTGGAGGGTGTtttacattcggctctttctgcaacttcatgtgatatatgcacgatactgatacgaggtttagctagtggttatacttttggcgtgcgtggaagaaacagcaggtcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttatgcccatgttctgtgataggagtggagggtgt
gi|30 : cattagtgtttttgcagctaatgcgcatgcttagcggccatagtgcggcattctgggaattatatttttactgtaatttttaattttccctaaaacattaagtccaatacattttacacagatacatacactatctttattcaggaagttctgttaaataatctaacaataacttttcagataacgaactctttcgatactttccgtaagccaggtaatttacattcggctctttctgcaacttcatgtgatatatgcacgatactgatacgaggtttagctagtggttatactGCTAGTGCCTCGG---G-CGCTAGACTATA--CAATTA--GTGCTTTGGATGAGGTGGTTGGTTTTTTT--CAG-C-TAATGCGCATGCTCT-TGC-G--GC-CAT-AG
gi|31 : --------------------------A----------ATGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACT
gi|31 : --------------------------A----------ATGATCA-----AA-GAGTG--GC------GGGGAC-GGGGACCAG-----ACcgttctgggcagaacgaatgatcaaagagtggcggggacggggaccagac
gi|32 : agtctggtccccgcccccgccactctttgatcattcgttctgggcagaacgG-C-TAATGCGCATGCC-C-GG--GAAGC-CAT-ATTGC-GG-CATTCC--GG-GAGTTATATAGACTGAACT---------G-T-A-------------AT----TTTT----ATTTTCCT--AAAACATT-
gi|33 : ----------GTGATCA-----AA-GAGTG--GC------GGAAGC-GGGGACCA
gi|33 : --------------------------A----------GCGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----Aacgctccggcaggacgagcgatcaaagagtggcgggggcggggaccaga
gi|34 : tggtccccgcttccgccactctttgatcacacgctccggcaggacg--------------------------A----------ATGATCA-----AAAGAGTG--GC------GGGGCC-GGGGACCAG-----A
gi|35 : cgcccccgccactctttggattcattcatactggaaacg--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGAC
gi|36 : ggtcactctttcaacacttgttttgggggcccctaaacaGTC-CCCGCC--------------------------ACTCAAAATGAGTAGTCA-----AT-GAGTGTTG-------GGGGGC-TGGGACCAG-----ACTAAt
gi|37 : --------------------------A----------GTGATCA-----AT-GAGTG--G---------GGGC-GGGTACCAG-----ACTgggaaccatacc
gi|37 : ----------GTGATCA-----AA-GAGTG--GT-------GGGGT-GGGGACCAG-----cgttttgtgatcaaagagtggtggggtggggaccag
gi|38 : agtctggtacccgcccccactcattgatcactcgttttAGCGCCCTCG---G-TGCTAGCATATA--CG-TTA--GTA--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GCATAT-AG
gi|4 : AAAA-A-CACG-ATTGCTGA-TATGTTA----AC-TATATTTATTTAG-GGAGTTCTGTTA-AGTAA-TCTAAAA---ATA-----------------AACTCTT--TC--G-A-TACTT-T-CTGTCAAG-------CCA-
gi|4 : AAAGC-GT-------CAT--G-G-CGT-GCGTAGGA-AAACAGCTGGTCAA-----------AG-TTGG-CACAA-ATC--ATC----------GGA--AATTCAACTCAAGTA---A-------ACTGTGTCCAT-------GTTCATTTA-TA--------------GTAGCGAGtttcattggctgtgaagtaatttacattcgatgtaacagtgcgcgggaaaaattctgccttcaagtttttgtaatgtcatgttatgtataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatactgatttgtggaaagcgtcatggcgtgcgtaggaaaacagctggtcaaagttggcacaaatcatcggaaattcaactcaagtaaactgtgtccatgttcatttatagtagcgaggaga
gi|40 : aaaaacacgattgctgatatgttaactatatttatttagggagttctgttaagtaatctaaaaataaactctttcgatactttctgtcaagccatttcattggctgtgaagtaatttacattcgatgtaacagtgcgcgggaaaaattctgccttcaagtttttgtaatgtcatgttatgtataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatactgatttgtggTC--ATCCTTGGGTTAAGGA--AATTCAG-----GTA---A-------ATAGTGTTAAT-------GTTCA-TTA-TA-------------------GAGCGGAGGGTGTAgaga
gi|41 : GCTAGCCTGGTC-CCCGCTCCCTGGGAACG---------------A----------ATGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAt
gi|42 : --------------------------A----------ATGATCA-----AA-GAGT--------------GGC-GGGGACCAG-----A
gi|43 : gtctggttcccgccggcattttgatcatatcgttcg--------------------------A----------GTGATCA-----AC-GAGTG--GT------GGGGGC-GGG
gi|44 : tggtcccccgccacttattcatcattcgttttgggGCTAGCGCGCTCGA--G-CGCTAGCATAAA--CG-TTA--GTA--------------------TTTTTG--CAG-C-TAATGCGCA
gi|45 : gttataTA---A-------AGTGTGCCAAT-------GTTCATTTA------------------TAG-GAGCGGAGGGTGT
gi|46 : ttaagaaatcatgtcagcttTGCT-T-GAC-G--GC-CAC-AGTGC-GG-TATTCT--GG-AAGTT------------AC---------A-T-A-------------G------------AATTTTC
gi|47 : --------------------------A----------GTGATCA-----AA-GAGT--------------GGC-GGGGACCAG-----ACTattatt
gi|48 : gttctgggagtaacccagaacaAAG-TTGG-TGCAA-ATT--GAACTTGAGTTATGGA--AATTCAA-----GTA---A-------ACTGTG
gi|49 : --------------------------A----------GTGATCA-----AG-GAGTG--GC------GGGGGC-GGGGACCAG-----GCT
gi|5 : aacaAT-ATT-ACATAAAA-C-AACGGATTTATGAATATGTAT----AC-TATCTTTCTTCTG-CAGTTCCTGTTA-AGTAA-TATAACA---ATTACTTTTCAGAT-A-ATTAACTCAT--T---G-A-TACTT-TCC-GT-AAG-------
gi|5 : TGAGGTGCAAATTC------------TTAG--TGGTTATA------C--TTGGG-CAAAGC-GT-----------TGTG-CGT-GCG--GAAGAA-CAGC-GGTCAATTTCTAATGAAAG-TTGG-CACACTATCCTGTGCTTGATTAAAAGA--AATTCAA-----GTA---A-------ATTGTGCTCAT-------GTTAA-TTA-TA--------------G--G-AAGCGGAAGGTGTagcttagattttaccattcgggttttttcgtaacgtatgtgaatgcaatgtataatgcacatgtgaggtgcaaattcttagtggttatacttgggcaaagcgttgtgcgtgcggaagaacagcggtcaatttctaatgaaagttggcacactatcctgtgcttgattaaaagaaattcaagtaaattgtgctcatgttaattataggaagcggaaggtgt
gi|51 : atattacataaaacaacggatttatgaatatgtatactatctttcttctgcagttcctgttaagtaatataacaattacttttcagataattaactcattgatactttccgtaagagcttagattttaccattcgggttttttcgtaacgtatgtgaatgcaatgtataatgcacatg--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTA
gi|53 : cgGGTCAATTTCTAATGAAAG-TTGG-CACAT-ATC--
gi|6 : ------A-TGCAT-TTT-ACACAAAATA-CACG-ATTGCTGA-TACGTAC----AC-AATCTTTATTCAGAGGGGTTCTGTTA-AGTAA-TATAACA---ATAACTTTACAGGT-A-ATGATCCCGTAATCCAG-G-TAATT-TAC-AT-TTGGTTCTTTCC---G---------TA-----------------------ACGTCATGTGA-TGTA--TGCATAG-CATGAGGT
gi|6 : AGCATGAGGTACGAATACACCGACACAAATT-GGCCTA--T-TGGTTATAC--TTAGG-CAAAGT-GTAA-----CATTTG-G-CGT-GCATGGAAGAAACAGCAGNNNNNNNNNNNNNNNNNN-NNNN-NNNNN-NNN--NNNNNNNNNNNNNNNN--NNNNNNN-----NNN---N-------NNNNNGTTCAT-------GTTCATTTA------------------TAA-GAGCGacgaatacaccgacacaaattggcctattggttatacttaggcaaagtgtaacatttggcgtgcatggaagaaacagcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcatgttcatttataagagcg
gi|7 : atgcattttacacaaaatacacgattgctgatacgtacacaatctttattcagaggggttctgttaagtaatataacaataactttacaggtaatgatcccgtaatccaggtaatttacatttggttctttccgtaacgtcatgtgatgtatgcatTTG--CAG-C-TGATGCGCATGCT-TTGGC-G--GC-CAT-AGTGC-GG-CATTTT--TG-GAGTT-----------------------------------------TT----TTTT---AATTT--------------------TCC------C-TG-------------AAA-A-CACG-AT-------------C----AC-TATCTTTATTTAG-GGAGTTATGTTA-AGTAA-TGAAATA---ATAACTTATCAGAT-A-ATGTACTCTT--GC--A-G-TACTT-TCC-GT-AAG-------CCA-GG---------TA-----------------------AT-TTACGT
gi|7 : ------C--TTAAGACAAAGC-GTAG-----CAGTTG-G-TGT-GCGTGGAAGAAACAGCAGGTCATTTTCTAATCAAAGTTTGGCCACAttggttctttccgtttcgtcttgtgatgtatgcatagcatgaggtatagatatacctacatgagtttggcctagtagttatacttaagacaaagcgtagcagttggtgtgcgtggaagaaacagcaggtcattttctaatcaaagtttggccaca
gi|8 : ttgcagctgatgcgcatgctttggcggccatagtgcggcatttttggagttttttttaattttccctgaaaacacgatcactatctttatttagggagttatgttaagtaatgaaataataacttatcagataatgtactcttgcagtactttccgtaagccaggtaatttacgtttggttctttccgtttcgtcttgtgatgtatgcatagcatgaggtatagatatacctacatgagtttggcctagtagttataG-TTA--GTG--------------------TTTTTGGGCGG-CCTAATGCGCATGCT-T-GGCCG--GCACAT-AGTGCCGG-CATTCTTGGGCGAGTT------------CT---------A-T-A-------------CT----TTTTTATAATTTTTCCTAAAAAC-TT-AAACGTCT------A-T-TATCTTT-ACTTAACA-A-CACG-ATTGCTGA-TACGTATAGTAACGTATCTTTATTCAG-GAAGTTCTGGTACAGTAACTCTTAAA---AT-ACTTTTCAGGT-A-ATGAACTCTT--TC--GCATTACTT-C-C-GT--AG-------CCA-GG---------TAAGTTACATCGGTTCTTTCCGTA-ACGTCATGTGAGTATAATT--AT-G-CATGA
gi|9 : GCTAGCGCTTTCG---GGCGCTAGCATATA--CT-TTA--GTG--------------------TTTTTG--CAG-C-CAATGCGCATGCT-T-GGC-A--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A--------------T----TTTT---AA-TTTCCCTAAAAATATT-A--ACTCCA-----A-TTCGT-ATT-GCACAAAA-A-CACG-GTTGCTGA-TACGTAA----AC-
gi|9 : aaatcagtcgatttttcagcatttgtcatgacaataaacaaagggaactatcaaaaattttcagaaatcattgttacGCTAGCGCCC--GAAAG-CGCTAGCATATATACG-TTAA-GTA--------------------TTTTTG--AAG-C-CAATGCGCATGCT-T-GGC-A--Gatatatacgttaagtatttttgaagccaatgcgcatgcttggcagta
blockSeqs : T AAAG TA A A CTTTGGATGAGGTGGTTGGT GG G C C T C AA A A C C TG C ATTATTATACTGTTAATTTTTTCT TAT T A AACG GGCTAGA AC C A T A G A TAGTA G A C C C ATT . . AA CCA C T C CC C GTTCTTT T ACTTTTCCA ATTTACATTCGGTTCTTTCCGTA G ATT CCT G A CCACCACTCTGTTATCACTCGTAACGA CCCGT C TT TCAGAAG G GTCCT G GAATACACCGACACAAATTGGCCTATTGGTTATA GG G A C AATGTTC T A A T T A CT CT TT ACTCAA CGTATATATAC GTTGACA T TTTG C
blockSeqs : G GG . . . . . . . C . . . A . . . . . ATATAGACTGAACTGTAAT . A . CA AA AC . . . . . . T . . . . A . . . . C . . . CA . . . . AGTTACATCGGTTCTTTCCGTA . TGC TAG G . CCCTGGGAACGA . A . T . . G AAATTCTTAGTGGTTATA . C . . AAGTTC . . . T . C A . . A TA . T TAG .
blockSeqs : C GG . . . . . . . . . . . . . . . . . CTCTAAAACTCGTAAT . T . CA AA AC . . . . . . C . . . . A . . . . T . . . CT . . . . TTTCCATT . ATT TG . . ACTCAAAATGA . . . T . . G GAATGCTAGTGGTTATA . A . . AACT . . . T . C A . . N A . T TGA .
blockSeqs : T AG . . . . . . . . . . . . . . . . . ATATTTTTACTGTAAT . T . AC AA GC . . . . . . C . . . . C . . . . G . . . CT . . . . . . CA TG . CCTCT . . . C . . G ATGCTACTGACG . G . . TAT . . . N . . A . . A A . T TAG .
blockSeqs : T GG . . . . . . . . . . . . . . . . . TATATTAGAA . T . CG AA AC . . . . . . T . . . . C . . . . T . . . CG . . . . . . T TG . ACGG . . . C . . . GAATATTTCG . A . . AAC . . . T . . N . . A A . T TAG .
blockSeqs : T G . . . . . . . . . . . . . . . . . ATAATGAAT . T . AA AA AC . . . . . . A . . . . C . . . . C . . . CC . . . . . . T . A . . . C . . ATGTCA . A . . AGC . . . T . . A . . G A . T TA .
blockSeqs : . G . . . . . . . . . . . . . . . . . TTAAAAC . T . AA AA AC . . . . . . C . . . . C . . . . A . . . CT . . . . . A . . . C . . . . . . C . . . T . . C . . G A . T . .
blockSeqs : G . . . . . . . . . . . . . . . . . CTATACT . T . AA A AC . . . . . . C . . . . A . . . . G . . . CC . . . . . A . . . C . . . . . . . T . . N . . A A . T . .
blockSeqs : . . . . . . . . . . . . . . . . . TTGTAT . T . AG A GC . . . . . . C . . . . C . . . . C . . . AC . . . . . A . . . C . . . . . N . . A . . A A . . . .
blockSeqs : . . . . . . . . . . . . . . . . . CTATAT . T . AC A TC . . . . . . A . . . . C . . . . C . . . CC . . . A . . . C . . . . . T . . A . . N A . . . .
blockSeqs : . . . . . . . . . . . . . . . . . ACATAG . T . . A G . . . . . . T . . . . T . . . . C . . . C . . . A . . . C . . . . . . . . T . . . A . . . .
blockSeqs : . . . . . . . . . . . . . . . . CTATAT . . . . A G . . . . . . C . . . . A . . . . C . . . C . . . A . . . T . . . . . . . N . . . N . .
blockSeqs : . . . . . . . . . . . . . . TT . . . C G . . . . . . C . . . . . . . . . . . . . . . . A . . . C . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . A T . . . . . . A . . . . . . . . . . A . . . T . . . . .
blockSeqs : . . . . . . . . . . . . . . . A . . . C . .
blockSeqs : . . . . . . . . . . A . . . C . .
blockSeqs : . . . . . A . . . . . .
blockSeqs : A . . . . . .
blockSeqs : A . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqCons : GG*** ** NTATAT***************************************** AC CC* ATT** GAATGCTATGGTTACG********************** AAC***** T*****************
originalCons : GCTAGCGCCCTCG---G-CGCTAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT------------CT---------A-T-A-------------NT----TTTT---AATTTTCCCTAAAAACATT-A--CGTCC------A-TGCAT-TTT-ACACAAAA-A-CACG-ATTGCTGA-TACGTAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TC--G-A-TACTT-T-C-GT-AAG-------CCA-GG---------TA-----------------------ACGTCACGTGA-TATA--T--AT-G-CATGAGGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC------------T-AG--TG--T-CG------C--TTAGG-CAAAGC-GTAA-T--TCATTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAATTTCTAATCAAAG-TTGG-CACAA-ATC--ATCCTTGAGTTAAGGA--AATTCAA-----GTA---A-------ACTGTGCCCAT-------GTTCATTTA-TA--------------GTAG-GAGCGGAGGGTGTA
finalCons : GCTAGCGCCCTCGGG---CGCTAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTTNTATAT-----------------------------------------TTTT---AATTTTCCCTAAAAACATT-A--CGTCC------A-TACAT-TTT-ACACAAAA-A-CACG-ATTGCTGA-TACGTAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TC--G-A-TACTT-TCC-GT-AAG-------CCA-GG---------TA-----------------------ACGTCACGTGA-TATAATT--AT-G-CATGAGGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-----AA-GAGTG--GC------GGGGGC-GGGGACCAG-----ACTAAGCATGAGGTACGAATGCTATGGTTACG----------------------C--TTAGG-CAAAGC-GTAAC-----ATTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAATTTCTAATCAAAG-TTGG-CACAA-ATC--ATCCTTGAGTTAAGGA--AATTCAA-----GTA---A-------ACTGTGCCCAT-------GTTCATTTAT-----------------TAG-GAGCGGAGGGTGTA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CGGATATTCTTTCTTGACATTTCGCGGGAATATGAACCATTTTATGGGTAGTCGTTCAAGTAATTTACATTCGGTTCTTTTNGTTAACTTGTAAACAATTCTGACTTCTCGAGTTTCCGCAACATCATGTGACGTACATGTATG
Unaligned ( gi|20 ): TATATATGTCTTGCACTTACTGTCTTGTTTAAAAGTTATTCTCCATTATTTGAATCTGCACACAACTATATAATGCCATTTTCATGTATTTAGATACAGACTGTATACACATTATGATAATGTGATAAGATGTATG
Unaligned ( gi|24 ): TATATAACCATCTTGTTTAAAAGTTGTTCTTTTAATATTTGAATTTGTATACCACCATACAATGTCATTTTTGTTTATGCACAGGTATGCATATTGTAACATGTATGCATATAG
Unaligned ( gi|39 ): TCGTTCAAGTAATACATTCGGTTCTTTTTGTGCAGCTCAGAAAACAATTCTGACTTCTCGAGTTCC
Unaligned ( gi|50 ): GCAGCATCGGCTTCCCAACTCTGCAACATCTTGAACAT
Unaligned ( gi|52 ): CGTATTAGTTTGTACTATCAATTTGTCTAGTA
Alignments
lowQualScore : 22222222222222222222 44444444444444444444444 111111111111 111111111111 111111111 88888888888888888888888 1111 111 4444444444444444444444444444444444444 11 66666666666666666666666666666666 222222 11111111111 1111111 44444444444444444
lowQualScore : 1 44 3 77 33333333333333333333 33 2 2 4 2 2 33 4 2 2 2 33 2 77777 2 99999999999999999999999 8888 333333333333 0 2 888888888888 55555 2 2 2 2 2 2 66666 2 2 2 2 2 444 2 2 33 555 2 2 1 2 9999999 3 666666666 77777777777777777777777 0000 1 777 6 6 9999999999999999999999999999999999999 1 1 22 2 1 55555 0 2 11 66666666666666666666666666666666 0 5 4 444444 0 3 3 3 1 0 2 2 5 33 33 0 44 77777 00000000000 0000000 0 11111111111111111
lowQualScore : . .. . .. .................... .. . . . . . .. . . . . .. . ..... . ....................... .... ............ . . ............ ..... . . . . . . ..... . . . . . ... . . .. ... . . . . ....... . ......... ....................... .... . ... . . ..................................... . . .. . . ..... . . .. ................................ . . . ...... . . . . . . . . . .. .. . .. ..... ........... ....... . .................
lowQualScore : 1 66 1 33 22222222222222222222 44 4 2 4 2 2 11 7 4 7 7 77 5 22222 7 66666666666666666666666 3333 777777777777 2 9 555555555555 88888 5 5 5 4 5 5 00000 7 9 9 9 7 777 7 7 77 888 7 7 5 7 3333333 1 000000000 00000000000000000000000 8888 7 222 7 7 4444444444444444444444444444444444444 8 8 55 0 8 33333 8 5 44 88888888888888888888888888888888 8 0 0 555555 1 3 1 1 1 5 7 7 3 00 77 2 22 77777 66666666666 0000000 4 44444444444444444
consensus : GCTAGCGCCCTCGGGCGCTAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT----NTA-T-------------A---------TTTTT----AAT------------TTTCCCTAAAAACATT-A--CGT----CC-A-TAC-AT-TTT-AC-ACAAAA-ACACG-ATTGCTGA-TACGTAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TC--G-A-TACTTTCCGT-AAG-------CCA-GG---------TA-----------------------ACGTCACGTG--A-TATAAT-TAT-GCATGAGGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-AA-GAGTG--GCGGGGGC-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC-----------------T---A-T-GGTTATACTTAGG-CAAAGC-GTAA----CATTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAATTTCTAATCAAAG-TT-GG-CACAA-ATC--ATCCTTGAGTTAAGGA--AATTCAA-----GTA---A-------ACTGTGCCCAT-------GTTCATTTAT----------------TAGGAGCGGAGGGTGTA
Reference ( family-1696 ) : GCTAGCGCCCTCGGGCGCTAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT----NTA-T-------------A---------TTTTT----AAT------------TTTCCCTAAAAACATT-A--CGT----CC-A-TAC-AT-TTT-AC-ACAAAA-ACACG-ATTGCTGA-TACGTAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TC--G-A-TACTTTCCGT-AAG-------CCA-GG---------TA-----------------------ACGTCACGTG--A-TATAAT-TAT-GCATGAGGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-AA-GAGTG--GCGGGGGC-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC-----------------T---A-T-GGTTACGCTTAGG-CAAAGC-GTAA----CATTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAATTTCTAATCAAAG-TT-GG-CACAA-ATC--ATCCTTGAGTTAAGGA--AATTCAA-----GTA---A-------ACTGTGCCCAT-------GTTCATTTAT----------------TAGGAGCGGAGGGTGTA
gi|1 : GCTAGCGCCCTCGG-CGCTAGCATATA--CG-TTACGGTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT----CTA-T-------------A---------TTTTTT---AAT------------TTCCCCTAAAAACATT-A--CGT----CT-A-TG--AT-TTT-GC-ACAAAA-TCACG-ATTGCTGA-TACGTAT----AC-TATCTTTATTCAG-GAAGTTCTGTTA-GGTAA-TCTAACA---ATAACTTTTCAGGTTATATGAACTCTT--TC--G-A-TACTTTC-GT-AAG-------CTA-GG---------TA-----------------------ACGTCATGTG--A-TATA---TAT-GCATGAAGTTAGTCTGGTC-CCCGCC--------------------------A----------GTGATCA-AT-GAGTG--GCGGGGGC-GGGGACCAA-----ACTAAGC------TA-----GC---------------------A-T-GG-----CTTAGG-CAAAAC-ACAATGTTCAGTTG-G-TGT-GCGTGGGAGAAACAGCAGGTCAATTTCTAATCAAAG-TT-GG-ATCAA-ATT--ATCCTTGAGTTATGGA--AATTGAA-----GTA---A-------ACTGTGCACAT-------GTTCATTCATACAAAAAAAAAAAATGTAGGAGCGGAGGGTGTA
gi|10 : ATATA--CA-TGG--GT---------------------TTTTTG--CAGGC-TAATGCGCATGC--T-GGC-T--GG-CATAAGTGT-GGCCATTCT--GG-GAGTTATTATTA-T-------------A---------CTGTT----AATTTTTTCTTTTTATTTCCCTAAAAACATTAA--CAT----TC-A-AAC-AT-TTTAAC-AC-AAA-ACAC
gi|11 : taaccatcttgttcaaaagttgttcttcttttaatattagaatgtacaccaccattacaatgccatttttggttatgtatgtatcgcatttgtatataaatgtaataagatggtacgtcttaaggcaatagatatatagtatCTAGAGCGCTAGCATATA--CG-TCA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--GG-GAGTT----TTG-T-------------A---------TTTTT----AAT------------TTACCCTAAAAACATT-A--CAT----CT-A-TG--AT-TTT-ACAAAAAAA-ACACG-ATTGCTGA-TACGTAT----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AGTAA-TCAAACA---ATAAC------------ATGAACTCTT--TC--G-A-TACTTTCCGT-ATG-------CCA-GG---------TAATTTACATTCGGTTCTTTCCGTAACGTCATGTG--C-TATAAT-TAT-GCATGAcact
gi|12 : cgTTCAG-GAAGTTCTGTTG-AGCCA-TCTAAAA---ATAACTTTTCGAAT-T-ATGAACTCCT--TT--G-A-TACTTTTCAT-ct
gi|12 : -CAT-GCGTGAAAGAAACAGCAAGTCGATTTTTAATCAAAG-TG-GA-CATAA-ATC--ATCtggtggtcgttcaagtagtttacattcggctcttttcgtgaccgtgcgcgggtaaaattctgccttcgagaaatttccgtaacatcatacatatgaagtacgaatataaattccaaggttggcctggtggtatacttaggaaaacatgcgtgaaagaaacagcaagtcgatttttaatcaaagtggacataaatcatca
gi|13 : ttcaggaagttctgttgagccatctaaaaataacttttcgaattatgaactcctttgatacttttcattggtggtcgttcaagtagtttacattcggctcttttcgtgaccgtgcgcgggtaaaattctgccttcgagaaatttccgtaacatcatacatatgaagtacgaatataaattccaaggttggcctggtggtatacttaggaaaa-TAATGCGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--AG-GAGTT----ATAATGA-----------A---------TTCTT----AAT------------TTTCCCTAAAAACATT-A--ACC----CA-A-TAC-CA-TTT-GC-ACAAAA-ACACG-ATTGCTGA-TACGGAC----AC-TATCTTTATTCAG-GGAGTTCTGTGA-AGTAA-TCTAAAG---ATAACTTTTCAGAT-A-TTGAACTCTT--TG--G-A-TTCTT----T-ATG-------CCA-GG---------TA-----------------------Aa
gi|14 : CGGTAGCATATA--CG-T--------------------------------G--CA-----AATGCGCATGCT-T-GGA-T--GC-CAT-AGTGC-GG-CATTCT--GG-GA-------TTA-A-------------A---------ACTGT----AAT------------------TAAA------------T----CCAA-TAC-AT-TTT-AC-ACAAAA-ACACG-AT-------TATGCAC----AC-T----------AG-GAGATTCTGTTA-AGTAC-TCTAACA---ATAACTTTTCAGAT-A-ATGAACTCTT--TT--A-A-TACTTTCAGT-AAG-------CCATGC---------TATTTCCATT---------------ACGTCACGTGGTA-TACAATGTAT-TCATAGGATGAGtttacactcggttctttttgtgacagagtgcggctttcgagagttttcgtagattgtgcctatg
gi|15 : TAGCGCCCTCGGGCGATAGCATATA--CG-TTA--GTG--------------------TTTTTG--CAG-C-TAATGTGCATGCT-T-GGC-G--GT-CAT-AGTGC-GG-CATTCT--GG-GAGTT----CTA-T-------------A---------TTAAT----AAT------------TTTCACTAAAAACATT-A--CGTTTGGCT-A-GATGAT-TTT-AC-ACACAA-ACACG-ATTGCTAA-TACGCAT----AC-TACCTTTATTCAG-GAAGTTCTGTTT-AGTAA-TCTAACAATTATAACTTTTCCGGT-A-ATGAACTCTT--TC--G-A-TACTTCCTGT-AAG-------CCA-GG---------TA-----------------------Agtgcaattatacagacacgaggtaggcc
gi|16 : TTAGTCTGGTC-CCCGCCCCACCACTCTGTTATCACTCGTAACGA----------GTGATCA-AA-GAGT---GTAGGGGC-GGGGACCAG-----t
gi|16 : --------------------------A----------GTGATAA-CA-GAGTG--GTGGGG-C-GGGGACCAG-----ACTAAGCATGAGGTACGAATGC-----------------T---AGT-GGTTATACTTGGG-CAAAGC-GTAATGTTCATTTG-G-CGT-GCGTGGGAGAAACAGCAGGTCAATTTCTAATCAAAG-TT-GG-CACAA-ATT--ATGCTTGAGTT-AGGA--AATTCAA-----GTA---A-------ACTGTACCCAT-------GTTCATTTA-----------------TAGGAGCGGGGAATGTgcatgaggtacgaatgctagtggttatacttgggcaaagcgtaatgttcatttggcgtgcgtgggagaaacagcaggtcaatttctaatcaaagttggcacaaattatgcttgagttaggaaattcaagtaaactgtacccatgttcatttataggagcggggaatgt
gi|17 : ctggtccccgcccctacactctttgatcactcgttacgTTAGTCTGGTC-CCCGTCCCTCTTTGATCACCCGTAACG-----A----------GTGATCAGAA-GA--------GAGGC-GGGAACCAG-----A
gi|17 : TCTGATCACTCGTT--------------------------ACGG-------GTGATCA-AA-GAG--------GGAC-GGGGACCAG-----ACTAAGCATGAGGTAC--ATGT------------------------------CACTTCGG-CAAAGCCGTAAGTT-CATTTG-G-CGT-GCGTGGA-GAAACAGCAGGTCAATTTCTAACCAAAG-TTAAA-CACAA-ATT--ATCCTT-AGTTAAGAATTAATTC-A-----GTA---A-------ACTGTGCCCAT-------G--------T----------------TAAG-GCGGAGGGTGgcatgaggtacatgtcacttcggcaaagccgtaagttcatttggcgtgcgtggagaaacagcaggtcaatttctaaccaaagttaaacacaaattatccttagttaagaattaattcagtaaactgtgcccatgttaaggcggagggtgga
gi|18 : tctggttcccgcctctct-T-GGTTATACTTAGG-CAAAAC-GTAA----CTTTTG-G-CGT-GCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NN-NNNNN-NNN--NNNNNNNNNNNNNNNN--NNNNNNN-----NGA---A-------ATTGTGCCCATGTTGACAGTTCATTTA-----------------TAGGAGCGGAGGGTga
gi|2 : tgaggtatacgaaataccgatacgaggtttgtttagTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-A--GC-CAT-AGTAC-AG-AATTCT--GG-GACTT----CTC-TAAAACTCGTA---A---------TTTTT----AAT------------TTT-CCTATAGACATT-A--AAT----CCAA-TGC-AT-TTT-AC-ACAAAA-ACACG-ATTGTTGA-TATCAAA----AC-TATCTTTATTCAG-GAAATTTTGTTA-AATAA-TCTAA-A---ATAAC-TTTCGGAT-A-ATGAGCTCTT--TA--G-A-TACTTCCCGT-AAG-------CCA-
gi|2 : AGGTACGAATAT-----------------TTCGA---GGTT-------GG-CCTAGT-GTTA----TATTTG-GACAAAGCGTGGAAGAAACAGCAGATCACTTTCCAATCAAAG-TT-GG-CACAA-ATC--TTCTTTGGTTTAAAGA--AATTTAA-----GTA---A-------ACTGTGTTCAT-------GTTCATTTA-----------------TAGTAGCGGAGGGTGtttcattggcggtcgttcaaataatttatattcggttcctttcgtgacagtgcgcgggaaaaaatctgcctttgagagtttccgtaacgtaatgtgatggaaatacaggtacgaatatttcgaggttggcctagtgttatatttggacaaagcgtggaagaaacagcagatcactttccaatcaaagttggcacaaatcttctttggtttaaagaaatttaagtaaactgtgttcatgttcatttatagtagcggagggtg
gi|21 : ttttgcagctaatgcgcatgcttggcagccatagtacagaattctgggacttctctaaaactcgtaatttttaattttcctatagacattaaatccaatgcattttacacaaaaacacgattgttgatatcaaaactatctttattcaggaaattttgttaaataatctaaaataactttcggataatgagctctttagatacttcccgtaagccatttcattggcggtcgttcaaataatttatattcggttcctttcgtgacagtgcgcgggaaaaaatctgcctttgagagtttccgtaacgtaatgtgatggaaatac--------------------TTTTTT--CAG-C-TAATGCGCATGCTCT-TGC-G--GC-CAT-AGC----A-CATTCT--GG-GAGTT----ATA-TTAG----------A---------ACTGT----AGT------------TT----AAAAAACATT-T--AAT----CCAA-TAC-AT-TTT-AC-AC-AAA-ATACG-ATTACTGA-TA
gi|22 : ggtG-G-CGT-GTGTGGGAGAAACAGGAGGTCAATTTCCAATCAAAG-TT-GGCCACAC-ATT--ATCCTTGAGTTAAGGA--AATTCAA------TAT--A-------ACTGTG-CCAT-------GTTCATGCATTTG-------------TAAGAGCGGAGGGTGTAgtta
gi|23 : -A-TAC-AT-TTC-AC-ACGAAA-ACACG-ATTGATGA-TACGTAC----AC-TATCTTTATTCGG-GAAGACCTGTAA-AGT---------A---ATAATTTTTCAGAT-A-ATGAACTCTT------G-A-TACTTTCTGT-AAG-------CTA-
gi|25 : ctaACA---AAAACTTTTCAGAT-A-ATGAACTCTT--TG--G-A-TACTTTCGGT-AAG-------TCA-GGACTTTTCCATA-----------------------AAGTCACGTG--A-TG-----TAT-ACATAGGATTAGtgaa
gi|26 : --------------------------A----------GTGATCA-AA-TAGTG--GCGGGGGC--GGGACCAGGTCCTACTA---AT--GGTAC--ATGC-----------------T---A-gtacaaatatacagatacgagg
gi|26 : tcgtcag--------------------------A----------GTGATCA-AA-GAGTG--GCGGGGGCGGGGGACCAG-----cgttctgggagtgatcaaagagtggcgggggcgggggaccag
gi|27 : tcgtcagtagcatgtaccattagtaggacctggtcccgcccccgccactatttgatcactcgttctgggAAGC-GTTA--------TG-G-CAT-GCGTTGAAGAAACAGCAGGTCA--TCC----------TT-GG--------------------GTTAAGAA--AATTTAG-----ATACGTATATATACATCGTGTCCAT-------GTTCATTTAT----------------
gi|28 : CTAGCGCCCGAGGGCGCTAGCATATC--CG-TCA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-A--TC-CAT-AGTGC-AG-CATTCT--GG-GAGTT----a
gi|29 : gatta-GAGTT----ATA-T-------------AGAAAAGTAATTTTT----AAA------------TTTCCCTAAAAACATT-A--AAT----CC-AATAC-AT-TTT-TC-ACAAAA-ACGCG-ATTGCTGA-TACGTAC----AC-TATCag
gi|3 : --CA-TTA--GTG--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-AGC-G--GC-CAT-AGTGC-GG-CATTCT--GG-GAATT----ATA-TTTTTACTGTA---A---------TTTTT----AAT------------TTTCCCTAAAA-CATT-A--AGT----CC-AATAC-AT-TTT-AC-ACA----------------GA-TACATAC----AC-TATCTTTATTCAG-GAAGTTCTGTTA-AATAA-TCTAACA---ATAACTTTTCAGAT-A-ACGAACTCTT--TC--G-A-TACTTTCCGT-AAG-------CCA-GG---------TA-----------------------A
gi|3 : A----CTTTTG-G-CGT-GCGTGGAAGAAACAGCAGGTCAA----NNNNNNNNN-NN-NN-NNNNN-NNN--NNNNNNNNNNNNNNNN--AATT------------------------TATGCCCAT-------GTTC-TGTGA----------------TAGGAGTGGAGGGTGTtttacattcggctctttctgcaacttcatgtgatatatgcacgatactgatacgaggtttagctagtggttatacttttggcgtgcgtggaagaaacagcaggtcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatttatgcccatgttctgtgataggagtggagggtgt
gi|30 : cattagtgtttttgcagctaatgcgcatgcttagcggccatagtgcggcattctgggaattatatttttactgtaatttttaattttccctaaaacattaagtccaatacattttacacagatacatacactatctttattcaggaagttctgttaaataatctaacaataacttttcagataacgaactctttcgatactttccgtaagccaggtaatttacattcggctctttctgcaacttcatgtgatatatgcacgatactgatacgaggtttagctagtggttatGCTAGTGCC-TCGGGCGCTAGACTATA--CAATTA--GTGCTTTGGATGAGGTGGTTGGTTTTTTT--CAG-C-TAATGCGCATGCTCT-TGC-G--GC-CAT-AG
gi|31 : --------------------------A----------ATGATCA-AA-GAGTG--GCGGGGGC-GGGGACCAG-----ACT
gi|31 : --------------------------A----------ATGATCA-AA-GAGTG--GCGGGGAC-GGGGACCAG-----ACcgttctgggcagaacgaatgatcaaagagtggcggggacggggaccagac
gi|32 : agtctggtccccgcccccgccactctttgatcattcgttctgggcagaacgG-C-TAATGCGCATGCC-C-GG--GAAGC-CAT-ATTGC-GG-CATTCC--GG-GAGTT----ATA-TAGACTGAACTGTAA---------TTTTT-----AT------------TTTCCT--AAAACATT-
gi|33 : ----------GTGATCA-AA-GAGTG--GCGGAAGC-GGGGACCA
gi|33 : --------------------------A----------GCGATCA-AA-GAGTG--GCGGGGGC-GGGGACCAG-----Aacgctccggcaggacgagcgatcaaagagtggcgggggcggggaccaga
gi|34 : tggtccccgcttccgccactctttgatcacacgctccggcaggacg--------------------------A----------ATGATCA-AAAGAGTG--GCGGGGCC-GGGGACCAG-----A
gi|35 : cgcccccgccactctttggattcattcatactggaaacg--------------------------A----------GTGATCA-AA-GAGTG--GCGGGGGC-GGGGAC
gi|36 : ggtcactctttcaacacttgttttgggggcccctaaacaGTC-CCCGCC--------------------------ACTCAAAATGAGTAGTCA-AT-GAGTGTTG-GGGGGC-TGGGACCAG-----ACTAAt
gi|37 : --------------------------A----------GTGATCA-AT-GAGTG--G---GGGC-GGGTACCAG-----ACTgggaaccatacc
gi|37 : ----------GTGATCA-AA-GAGTG--GT-GGGGT-GGGGACCAG-----cgttttgtgatcaaagagtggtggggtggggaccag
gi|38 : agtctggtacccgcccccactcattgatcactcgttttAGCGCCCTCGG-TGCTAGCATATA--CG-TTA--GTA--------------------TTTTTG--CAG-C-TAATGCGCATGCT-T-GGC-G--GCATAT-AG
gi|4 : AAAA-ACACG-ATTGCTGA-TATGTTA----AC-TATATTTATTTAG-GGAGTTCTGTTA-AGTAA-TCTAAAA---ATA-----------------AACTCTT--TC--G-A-TACTTTCTGTCAAG-------CCA-
gi|4 : AAAGC-GT------CAT--G-G-CGT-GCGTAGGA-AAACAGCTGGTCAA-----------AG-TT-GG-CACAA-ATC--ATC----------GGA--AATTCAACTCAAGTA---A-------ACTGTGTCCAT-------GTTCATTTA-----------------TAGTAGC-GAGGtttcattggctgtgaagtaatttacattcgatgtaacagtgcgcgggaaaaattctgccttcaagtttttgtaatgtcatgttatgtataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatactgatttgtggaaagcgtcatggcgtgcgtaggaaaacagctggtcaaagttggcacaaatcatcggaaattcaactcaagtaaactgtgtccatgttcatttatagtagcgaggaga
gi|40 : aaaaacacgattgctgatatgttaactatatttatttagggagttctgttaagtaatctaaaaataaactctttcgatactttctgtcaagccatttcattggctgtgaagtaatttacattcgatgtaacagtgcgcgggaaaaattctgccttcaagtttttgtaatgtcatgttatgtataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatactgatttgtggTC--ATCCTTGGGTTAAGGA--AATTCAG-----GTA---A-------ATAGTGTTAAT-------GTTCA-TTAT------------------AGAGCGGAGGGTGTAaga
gi|41 : GCTAGCCTGGTC-CCCGCTCCCTGGGAACG---------------A----------ATGATCA-AA-GAGTG--GCGGGGGC-GGGGACCAG-----ACTAt
gi|42 : --------------------------A----------ATGATCA-AA-GAGT--------GGC-GGGGACCAG-----A
gi|43 : gtctggttcccgccggcattttgatcatatcgttcg--------------------------A----------GTGATCA-AC-GAGTG--GTGGGGGC-GGG
gi|44 : tggtcccccgccacttattcatcattcgttttgggGCTAGCGCGCTCGAGCGCTAGCATAAA--CG-TTA--GTA--------------------TTTTTG--CAG-C-TAATGCGCA
gi|45 : gttataTA---A-------AGTGTGCCAAT-------GTTCATTTA-----------------TAGGAGCGGAGGGTGT
gi|46 : ttaagaaatcatgtcagcttTGCT-T-GAC-G--GC-CAC-AGTGC-GG-TATTCT--GG-AAGTT----ACA-T-------------A-------------G----AAT------------TTTC
gi|47 : --------------------------A----------GTGATCA-AA-GAGT--------GGC-GGGGACCAG-----ACTattatt
gi|48 : gttctgggagtaacccagaacaAAG-TT-GG-TGCAA-ATT--GAACTTGAGTTATGGA--AATTCAA-----GTA---A-------ACTGTG
gi|49 : --------------------------A----------GTGATCA-AG-GAGTG--GCGGGGGC-GGGGACCAG-----GCT
gi|5 : aaca-AT-ATT-AC-ATAAAA-CAACGGATTTATGAATATGTAT----AC-TATCTTTCTTCTG-CAGTTCCTGTTA-AGTAA-TATAACA---ATTACTTTTCAGAT-A-ATTAACTCAT--T---G-A-TACTTTCCGT-AAG-------
gi|5 : TGAGGTGCAAATTC-----------------TTA-G-T-GGTTATACTTGGG-CAAAGC-GT----------TGTG-CGT-GCG--GAAGAA-CAGC-GGTCAATTTCTAATGAAAG-TT-GG-CACACTATCCTGTGCTTGATTAAAAGA--AATTCAA-----GTA---A-------ATTGTGCTCAT-------GTTAA-TTAT----------------AGGAAGCGGAAGGTGTagcttagattttaccattcgggttttttcgtaacgtatgtgaatgcaatgtataatgcacatgtgaggtgcaaattcttagtggttatacttgggcaaagcgttgtgcgtgcggaagaacagcggtcaatttctaatgaaagttggcacactatcctgtgcttgattaaaagaaattcaagtaaattgtgctcatgttaattataggaagcggaaggtgt
gi|51 : atattacataaaacaacggatttatgaatatgtatactatctttcttctgcagttcctgttaagtaatataacaattacttttcagataattaactcattgatactttccgtaagagcttagattttaccattcgggttttttcgtaacgtatgtgaatgcaatgtataatgcacatg--------------------------A----------GTGATCA-AA-GAGTG--GCGGGGGC-GGGGACCAG-----ACTA
gi|53 : cgGGTCAATTTCTAATGAAAG-TT-GG-CACAT-ATC--
gi|6 : -A-TGC-AT-TTT-AC-ACAAAATACACG-ATTGCTGA-TACGTAC----AC-AATCTTTATTCAGAGGGGTTCTGTTA-AGTAA-TATAACA---ATAACTTTACAGGT-A-ATGATCCCGTAATCCAG-G-TAATTTACAT-TTGGTTCTTTCC---G---------TA-----------------------ACGTCATGTG--A-TGTATG-CATAGCATGAGGT
gi|6 : AGCATGAGGTACGAATACACCGACACAAATTGGCCT---A-TTGGTTATACTTAGG-CAAAGT-GTAA----CATTTG-G-CGT-GCATGGAAGAAACAGCAGNNNNNNNNNNNNNNNNNN-NN-NN-NNNNN-NNN--NNNNNNNNNNNNNNNN--NNNNNNN-----NNN---N-------NNNNNGTTCAT-------GTTCATTTA-----------------TAAGAGCGacgaatacaccgacacaaattggcctattggttatacttaggcaaagtgtaacatttggcgtgcatggaagaaacagcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttcatgttcatttataagagcg
gi|7 : atgcattttacacaaaatacacgattgctgatacgtacacaatctttattcagaggggttctgttaagtaatataacaataactttacaggtaatgatcccgtaatccaggtaatttacatttggttctttccgtaacgtcatgtgatgtatgcatTTG--CAG-C-TGATGCGCATGCT-TTGGC-G--GC-CAT-AGTGC-GG-CATTTT--TG-GAGT---------------------------------TTTTT---------------------------------TT-A------------------AT-TTT-CC-CTGAAA-ACACG-AT-------------C----AC-TATCTTTATTTAG-GGAGTTATGTTA-AGTAA-TGAAATA---ATAACTTATCAGAT-A-ATGTACTCTT--GC--A-G-TACTTTCCGT-AAG-------CCA-GG---------TA-----------------------AT-TTACGT
gi|7 : C-----------------T---AGT-AGTTATACTTAAGACAAAGC-GTAG----CAGTTG-G-TGT-GCGTGGAAGAAACAGCAGGTCATTTTCTAATCAAAGTTT-GGCCACAttggttctttccgtttcgtcttgtgatgtatgcatagcatgaggtatagatatacctacatgagtttggcctagtagttatacttaagacaaagcgtagcagttggtgtgcgtggaagaaacagcaggtcattttctaatcaaagtttggccaca
gi|8 : ttgcagctgatgcgcatgctttggcggccatagtgcggcatttttggagttttttttaattttccctgaaaacacgatcactatctttatttagggagttatgttaagtaatgaaataataacttatcagataatgtactcttgcagtactttccgtaagccaggtaatttacgtttggttctttccgtttcgtcttgtgatgtatgcatagcatgaggtatagatatacctacatgagtttggcG-TTA--GTG--------------------TTTTTGGGCGG-CCTAATGCGCATGCT-T-GGCCG--GCACAT-AGTGCCGG-CATTCTTGGGCGAGTT----CTA-T-------------A---------CTTTTTTATAAT------------TTTTCCTAAAAAC-TT-AAACGT----CT-A-T-T-ATCTTT-AC-TTAACA-ACACG-ATTGCTGA-TACGTATAGTAACGTATCTTTATTCAG-GAAGTTCTGGTACAGTAACTCTTAAA---AT-ACTTTTCAGGT-A-ATGAACTCTT--TC--GCATTAC-TTCCGT--AG-------CCA-GG---------TAAGTTACATCGGTTCTTTCCGTA-ACGTCATGTG--AGTATAAT-TAT-GCATGA
gi|9 : GCTAGCGCTTTCGGGCGCTAGCATATA--CT-TTA--GTG--------------------TTTTTG--CAG-C-CAATGCGCATGCT-T-GGC-A--GC-CAT-AGTGC-GG-CATTCT--GG-GAGTT----CTA-T-------------A---------TTTTT----AA-------------TTTCCCTAAAAATATT-A--ACT----CCAA-TTC-GT-ATT-GC-ACAAAA-ACACG-GTTGCTGA-TACGTAA----AC-
gi|9 : aaatcagtcgatttttcagcatttgtcatgacaataaacaaagggaactatcaaaaattttcagaaatcattgttacGCTAGCGCCCGAAAGCGCTAGCATATATACG-TTAA-GTA--------------------TTTTTG--AAG-C-CAATGCGCATGCT-T-GGC-A--Gatatatacgttaagtatttttgaagccaatgcgcatgcttggcagta
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CGGATATTCTTTCTTGACATTTCGCGGGAATATGAACCATTTTATGGGTAGTCGTTCAAGTAATTTACATTCGGTTCTTTTNGTTAACTTGTAAACAATTCTGACTTCTCGAGTTTCCGCAACATCATGTGACGTACATGTATG
Unaligned ( gi|20 ): TATATATGTCTTGCACTTACTGTCTTGTTTAAAAGTTATTCTCCATTATTTGAATCTGCACACAACTATATAATGCCATTTTCATGTATTTAGATACAGACTGTATACACATTATGATAATGTGATAAGATGTATG
Unaligned ( gi|24 ): TATATAACCATCTTGTTTAAAAGTTGTTCTTTTAATATTTGAATTTGTATACCACCATACAATGTCATTTTTGTTTATGCACAGGTATGCATATTGTAACATGTATGCATATAG
Unaligned ( gi|39 ): TCGTTCAAGTAATACATTCGGTTCTTTTTGTGCAGCTCAGAAAACAATTCTGACTTCTCGAGTTCC
Unaligned ( gi|50 ): GCAGCATCGGCTTCCCAACTCTGCAACATCTTGAACAT
Unaligned ( gi|52 ): CGTATTAGTTTGTACTATCAATTTGTCTAGTA