lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333 7777777777 2 11 1 1 1 2222222222 11 333333 77777777777777777 1 1 1 11 2 11 33333333333 333333333333333333 888888888888888888888888888888888888888888888 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22 222222222 3 22 4444444444 44444 1111111 22222222 11111 11111 111111111 1111111111111111 11111 2 4444444 2222 22
lowQualScore : 6 555 5555555555 7 88 0 0 4 4 9 8888888888 8 00 8 666666 6 4 99 99999999999999999 3 9 1 1 5 00 5 6 5 5 0 77 777 0 0 77 00000000000 3 999999999999999999 000000000000000000000000000000000000000000000 3 777 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 55 555 3 1 444444444 3 1 66666 55 3333333333 44 7777 3 88 00000 999999 77 1 7777 3 3 3 3 3 3 3 1111111 77777777 55555 88 2 2 2 2 2 2 777777 999 333 2 22222 2 2 2 999 111111111 2 4444444444444444 33 2 2 2 2 2 22222 33 2 1 2 2 999 1 2 4 7777 1 55 2 333 2 2 55 2 33 777 6 2222222 2 0 2 2 2 2 4444 2 5 55 222 2 777 3 33 2 2 2 33 2 2 2 2 2 2 2 2 4 2 2 1
lowQualScore : . ... .......... . .. . . . . . .......... . .. . ...... . . .. ................. . . . . . .. . . . . . .. ... . . .. ........... . .................. ............................................. . ... ............................................................................................... .. ... . . ......... . . ..... .. .......... .. .... . .. ..... ...... .. . .... . . . . . . . ....... ........ ..... .. . . . . . . ...... ... ... . ..... . . . ... ......... . ................ .. . . . . . ..... .. . . . . ... . . . .... . .. . ... . . .. . .. ... . ....... . . . . . . .... . . .. ... . ... . .. . . . .. . . . . . . . . . . . .
lowQualScore : 0 000 5555555555 5 00 0 0 2 5 0 0000000000 0 88 0 444444 7 0 22 55555555555555555 2 8 4 4 7 22 0 1 0 0 1 88 000 7 6 00 55555555555 8 999999999999999999 777777777777777777777777777777777777777777777 9 555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 888 3 3 888888888 3 5 77777 88 5555555555 66 1111 3 88 44444 666666 99 2 1111 3 6 6 6 6 6 6 8888888 55555555 66666 66 5 5 5 4 4 4 444444 000 333 2 44444 2 2 2 333 444444444 2 7777777777777777 11 2 2 2 2 2 00000 22 4 1 4 4 444 8 4 7 4444 1 99 5 666 5 5 99 5 44 000 0 7777777 5 2 5 5 5 5 7777 5 0 99 666 4 444 7 44 5 2 4 11 2 4 4 4 4 4 4 4 7 5 7 9
consensus : NNNNNNNCAGTAGTATGGTTTAGCCGCCAAGGCCTAGTGGCCAGGTGTA-CT-AACTAGGCCGAC-----T----TCT-GAACTTCATGT-ACC-TTTCA--TC--TTTGTCC-AANGGT--GGCCC---------GT-----AAGTAATT-AATAAT-AA-CTTAA-TTGGCAAGAAG-TAAGT-GAA-AATTGAATATCCA---TGTAACGG-TA-----GGACC-TGGTCGAATG----------GATAAGTTAGGCATA------------T---CTT-GGTTGA--CTT-------TGA----AATAGAATGGTAC-A-TTGGTCC---G---GTTGAA-AATT-ACC-GA-A--C-A--------T--T---------------TTTT---AAA--TC-A-AGC--GA-GGAAC----CTTC-AAA---A-AATGT--ANC--CAGAATA-TCAAA-AACAGT--T--TGGCAACGTTTA----ANC-T-A--TGGG----AC-AA-TTGTCTCACTA------AA--TTACTT----T-AGGA-TTT-T-TCGA-A-T-A-------ATG---CCCA-GAN----GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TTG----G-CA--CT--TC-ATG---G-C-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAA--N-AT--GGCG-ATTTCC-GCC-TCGG-G-TTTTCA-A-TT----GTTCTGGGAACC--TT-CA-A-TTTTATAC-AAATTTT-ATTA--C-TT--TTTG--CGGAAAACAG-A--AAGTTCTTTTG-TGATA-GTAA-CGTC-TCCTCTTTAGG-AT---T-TT-GGAAATTCAAAGTAT-G-C-AGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AATATGGCGGATTA
Reference ( gi|3 ) : GTTTCAACAATAGTATG---TAGTTGC---AGC---GTGGACAGGTGTA-CT-AATCAAGACGAC-----T----TCT-GAACTTCATGT-GCC-TTTCA--TA--TTTGTCC-AATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTTAA-TTGGCAAGAAG-TAAGT-GAATAATTGAATATCCA---TGTAACGA-TA-----GGACCGTGGTCGAATG----------GATGAGTTAGGCATA------------T---CTT-GGTTGAAACTT-------TGA----AATAAAATGGTAC-A-TTGGTCCC--G---GCTGAAGAAT------GA-A--T-A--------T--T---------------TTTT---AAA--TC-ACAGC--GACGG--C----CTTCCAAA---A-AATGT--CGC--CGGAATA-TCAAAGAACAGT--T--TGGCAACGTTTA----AGC-T-A--TGGG----AC-AG-TTGTCCCACTA------AA--TTACTT----T-AGGA-TTT-T-TCGA-A-T-A-------ATG---CCTA-GAC----GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TTG----G-CA--TT--TC-ATT---G-C-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAA--T-GT--GGCG-ATTTCC-GCC-TCGG-A-TTTTTA-A-TT----GTTCTGGGAACC--TT-CA-A-TTTTATAC-AAATTTT-ATTA--C-TT--TTTG--CGGTAAACAG-ATTAAGTTCTTTTG-TGATA-GTAA-CGTC-TCCTCTTTAGG-A----T-TT-GGAAATTCAAAGTA--G-T-AGC-A---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AACATGGCAGATTAA
gi|20 : CAGTAGTATGGTTTAGCCG-----GCCTAGTGGCTAG---TA-CTGAACTAGGCCGAC-----TAACTTCT-GAACTTCATGTCACC-TTTCAATTC--TTTGTCCCAATGGTTGGGCCCCCCGG----GTGGCCCAAGTAATTAAATATA-AA-CTTAAATTGGCAAAGAG-TAAAT-GGAAAATTGA-TATCCA---T----CGGGTA-----TGACC-TGGTCGAATG-----------AT-AGT-AGGTATA------------T---CTT-GGTTGAATTTT-------TAA----
gi|2 : agagctTAGTATG---TAGTTGCCAAGGC---GTGG-CAGGTGTAACT-AATCA-GACGAC-----T----TCTAGAACTTCATGT-GCC-TTTCA--TA--TTTGTCC-AATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTTAA-TTGGCAAGAAG-TAAGT-GAATAATTGAATATCCA---TGTAACGA-TA-----GGACCGTGGTCGAATG----------GATGAGTTAGGCATA------------T---CTT-GGTTGAAACTT-------TGA----AATAAAATGGTAC-A-TTGGTCCC--G---GCTGAAGAAT------GA-A--T-A--------T--T---------------TTTT---AAA--TC-A-AGC--GAGAG--C----CTTCCAAA---A-AATGT--CCC--AGGAATA-TCAAA-AACAGT--T--T-GCAACGTTTA----ACT-C-A--TGGG----AC-AG-TTGTCCCACTA------AA--TTACTT----T-AGGATTTT-T-TCGA-A-T-A-------ATG---CCTATGAC----GAT-TTTGTTACTTT-TT-GTTTG-AA-G--TG----G-CGACTT--CC-AAG---G-C-A-TTTTTGGCGAC--G------T-TTTT----------------ATA--TGCGCAA-ATC-ATTGG-GAAA--T-GT--GGCG-ATTTCCGGCC-TCGGAA-TTTTTA-T-TG----GTTCTGGGGAAC--TT-CA-A-TTTTATAC-AAGTTTT-ATTA--CTTT--TTTG--CGGTAAACAGAATTAAGTTCTTTTG-TGATA-GTAA-CGTC-TCC-CTTTAGGAA----T-TT-GG-AATTCAAAGTA--G-T-AGC-A---A-GAAATCAGATG-TAAATA--TT-TTTTTCTTA-TAT-AATTCCT-TTT-GTT-CGGG-C-CATT-GGCGATCGGGGAATGCC-AACATGGCAGATT
gi|21 : GTA-CT-GACTAGGCCGACCTACAT----TCT-GAACTTCATGT-ACCCTTTCA--TTCTTTTGTCC-AATGGT--GGCCCCCCAGGGGGGCCC---AAGTAATT-AATAAT-AAACTTAA-TTGGCAAG-AG-TAAAT-GAA-AATTG-ATATCCA---TG----GG-TT-----AGACC-TGGTCGAAT-----------GAT-AG-TAGGTATA------------T---CTTGGGTTGAA
gi|11 : gagctcagtagtatggttagccggcctagtggctttaTA-CT-AGTAGGGCCTAC-----T----TCT-GAACTTCATGT-ACC-TTTCAT-TC--TTTGTCC-ATAGGT--GGCC-----------T-----AATTAA-TTAATAATAAA-CTTAA-TTGGCAAG-AG-TCAGTAAAAAAAATG-ATATCCA---TGTAACGG-TA------GACC-TGGTCGAAT-----------GATAAG-TAGGAATAAATAAGTTCACCT---CTT-GG--G-----T-------TGA----AAAAGATTGGTAC-A-TTGG------------TGAA-AATTAACC-GA-AATC-A--------TCAT---------------TTTT---AAA--TT-G-AGC--GA-GGAAC----CTTC--AA---T-AATGT--AGC--CAGAATA-TCAAAAA--AGT--T--T-GCAACGTTTACTCCGGC---A--TGGG----AC-AA-TT---TCACTA------AA--TTACTT----T-AGtt
gi|1 : gagctcatggagctagtataatagacctagcggcAC-----T----TCT-GAACTACGTGT-ACC-TTTCA--TCC-TTTGTCC-AAAGGT--GGCC----------TT-----A-GTAATT-AATCATCAA-CTTAA-TTGGCAAGA-G-TCAGC-AAA-AAT--GATATCCA---CGTAACGG-TA-----GA--CATGGTCGAATG-----------ATCAGT-AGGAATA------------A---ATA-AGTTCA--CTTCTTGCGTTGA----AATAGAATGGTAA-AATTGGTC-------------AAAATTCACC-GAGA--TCA--------TCAT---------------TTTT---AAA--TC--TAAC--GA-GAAAC----CTTC---A---A-AATGT--AGC--TAGAATA-TCATA-AACAGT--T--TG-CAACGTTTA----CTCAT-G--TGGGCCTCAT-AT-TTCTTTTAGTATACTTGAA--T-ATTT----T-A----TTT-T-TCGA-AAT-AGAAGAACAAG------A-GAA----AA--ACTGTTAC-AT-T--GTT-A-AA-G-TTG----GGCAA-CT--TCGATG---A-C-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGT-A-ATC-ATT-G-AAAA--G-AT--GGCG-ATTTC--GCC-TCGA-G-TTTTGA-A-TT----GTTCTGGGAATC--TT-TA-C-TTTTATAT-GAATTTT-AATA--C-TTAGTTTG----GAAAACAG-A---AGTTATTTTG-TGATA-GTAA-CGTC-TCCTCTTTAGG-A----T-TTTGGAAATTCGAATTAT-G-C-AGC-A---AGGAAATTAGATGTTAAATA--TGATTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-C
gi|18 : tagagctagtatattaggcttagcggctagtagggtct--TTCGTCC-AAACGT--GGCTT---------AT-----ACGTCATT-GATAAT-AAACATAA-TTGGCAAGAGG-C-AGT-GAA-AATTG-TTATCAA---CGTAACGG-TA------GACC-TGGTCGAATG----------ttggaggtttatgcaaattagcaaaacggtaatattgctgacaa
gi|4 : ttcATATT-AA-TTTAT-GTGACCAGAAGATAAGC-G-------GAACTTCCAAACTTTAACTA-TACCGGTAGACCAGAG-CGAATG-----------ACAAGT-AGGCATA------------T---CTT-GG--G-----T-------TGA----AATAGAATAGTAC-T-TTGGTCTTTTA---G--GAAAAATTCACC-GA-GG-T-C--------T--TCAT------------TCCT---AGA--TC-A--AT--GA-GGAAC----CTTC--AA---A-AATTA--AAC--CAGAATG-TCAAA-AATGGT--A--TG-CAACGTTTA------T-TGA--TGGG----AC-AA-TT-TC----TG------AA--T-----------AGGG-TTT-T-CCAC-A-C-A-------ATG---AACA-GAC----GA--TTTGTTAT-GT-TT-GTTTG-AA-G-TTT----T-CA--CT--TC-ATT---G-C-A-ATTT--GCTAT--C------T-TTTC----------------CTT--TACAC-T-ATC-ATT-G-GAAA--T-AT--GGTG-ATTTGC-GCT-TCAG-A-TTTTCA-A-TT----GTTCTGGGAACC--TT-CA-C-TTTT-CAC-ATATCCT-TTTGC-C-TT--TTTT--TGGAAAACAA-A--AAGTTTCTTTG-TGACT-ATAA-CATC-TCCTCTTTAGG-AT---T-TT-AGAAATTCAAGGTAT-G-T-AGC-A---TGGAAATTAGATGTTAAATA--TA-TTCTTCTTA-TAT-ATT--TC-TTT-GCC-C-GG-C-CATT-GGTGATA-GGAGAT-CC-AATATGGCGGCTTAtagtagcagagacatatataacatttatgtctctggtagtaggcatgaacaagttcacttctcgggttgaaatagaatggttcattaattggtccttttaaaggcttaaaatagtgaaaattcacagacgtcatca
gi|23 : cctttttttatcgtagctttctttttaggggAAGA-G-TCAGT-GAA-AATTGA-TATCCA---CGTAACGG-CA------GACC-TGG-CGAATGAAAAAGAATAAATAAGTT---CATT------------T---CTT-GG--GG----T-------AGA----AATAGAA--GTAC-A-TTGGT-----------TGAA-AAT------TA-A--C-AGAAACATTT--T---------------TTTT---AAA--TCGAC-GT--GAGAA--C----CTT--AAA---A-AATGT--AGCATTAGAATG-TCAAA-AACAGT--T--T-GCAACGtgtaaattagcaagacggtaatatttctggcaatg
gi|12 : CA---TATACCGG-TA-----A-ACC-TGACCGAATG-----------ATACGT-AGGCATAAG----------TAAGTTT-GCTT----CTT-------GGATTTCAATAGAATGGTAC-T-TAGGTT--------GTT-AATAGT------AA-A--C-A--------T--TCACCAAAGTCATCATTCTT---AAA--TC-A-AGCCTGG-GA--C----CTTC--AG---A-AATTT--AAA--CAGAATA-TCAAA--ACGGC--A--TG-CAACGCTTA----TTC---A--TGAG----AA-AA-TTGT---ACTA------GA--TTACTT----T-AGGA-TTT-T-TCAA-A-T-A-------ATG---AACG-GAT----GA--TTTTTTAT-GT-TT-GTTTG-AA-G-TTG----A-CA--CT--CC-A-T---A-C----------CGAT---------T-TTTT----------------CTT--TGAAC-C-ATC-TTT-G-
gi|5 : gttgtggagtttgcaaactttcacaatatttcaaaA---TATACCGG-TA-----G-ACC-TGACCGAATG-----------ATACGT-AGGCATAAGTAAGTTCGCTT---CTT-GG-----ATTT-------C------AATAGAATGGTACTA-TAGGTCTT--ATAAGTTAAA--ATTCACCCAA-G--TCA--------TCAT---------------TTTT---AAA--TC-A---------AG--C----CTTCGAAATTTA-AA----------CAGAATA-TCAAA--ACGGC--A--TG-CAACGCTTA-----TT-T-A--TGAG----AT-AA-TTGT---ACTA------GA--TTACTT----T-AGGA-TTG-T-TCAA-A-T-A-------ATG---AACG-GAT----GATTTTTTTTAT-GT-TT-GTTTG-AA-G-TTG----A-CA--CT--TC-A-T---A-C----------CGAT---------T-TTTT----------------CTT--TGAAC-C-ATC-TTT-G-AAAA--G-CT--GGTG-ACTTC------------------A-A-TT---------------------CA-T-TTTTATAC-ATATGTT-ATTG--C------TTG--AGG-GAAC----TTAAGTTCTTTTG-CGACT-GTAA-CATC-TCCTGATTAGG-A----TATT-AGAAATTCAAGGCAC-T-T-AGC-----TTCAAATAAGAAGTTTAATA--TT-TTTTCCTTA-TAC-AAA--TT-TTC-CTT-T-GA-C-CATT-CACGATG-GGGAAT-TT-AATATGG
gi|6 : taatctatataaacagaaatgtagtggagtttgcaaactttcacaatatttcaagtAC-A-TTGGTCC---G---GTTGAAAAAT------GA-T--C-A--------T--T---------------TTTTTTAAAA--TC-A-AGC--GA-GGAAC----CCTTCAAA---A-AATGT--ACC--TAGAATA-TCAAA-AACAGT--T--TG-CAA-GTTTA----A-C-T-ACATGGG----ACCAA-TTTTC--ACTA------AAATTTACTT----T-CGGA-TTT-T-G-GA-A-T-A-------ATG---CCTAAGAA----GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TTG----G-CA--TT--TC-ATG---G-C-A-TTTT--GCGACCGG------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAA--T-GT--GGCG-ATTTCC-GCC-TCGG---TTTTTATA-TTA---GTTCTTGG-------T-CA-A-TTTTATAC-AAATTTTTATTA--C-TT--TTTG--CGGAAAACAG-CTT-----CTTTTG-TGATAAGTAA-CGTC-TCCTCTTTAGG-AAT--T-TT-GGAAATTCAAAGTA--G-T-AGC-A---AGGAAATCAGATGTTAAATA--TT-TTTT-CTTA-TAT-AAT--CC-TTT-GTT-C-GGCC-CATTGGGCGATC-GGGAAT-CCAAACATGGCGGATTAtggtttgttgaaattagcaaaattgtaatatttctggcaatg
gi|7 : C--G---GTTGAA-AAT------GA-T--C-A--------T--T---------------TT-----AAA--TC-A-AGC--GA-GGAAC----CTTC--AA---A-AATGT--ACC--TAGAATA-TCAAAAAACAGT--T--TTGCAACGTT------AAC-TCA--TGGG----AC-AA-TT---TCACTA------AAA-TTACTT----C--GGA-TTT-TATGGA-A-T-A-------ATG---CCTA-GAA----GA--TTTGTTAC-GT-TT-GTTTG-AA-GTTTG----G-CA--CT--TC-ATT---G-C-ATTTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-G-AA--T-G---GGCG-A--TCC-G-C-TCGG-A-TTTTTA-ATTT----GTCTTGG----------CA-A-TTTTATATGAAATTTT-A--A--C-TT--TTTG--CGGAAAAC-------AGTTCTTTTG-TG--A-ATAACCGTC-TCCTCTTTAGG-AT---T-TT-GGAAATTCAAAGTA--GTT-AGCAA---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTATTATAAAT--CCTTTT-GTT-C-GG-C-C-TT-GGCGATC-GGGAAT-CC-AACAT-GCGGATTAtgcaaattagcaaaaacggtaatatttctggcaat
gi|10 : acatgt--T---------------TTTT---AAA--TC-A-AGC--GA-GGAAC----CTTC--AA---A-AATGT--ACC--CAGAATA-TCAAA-AACAGT--T--TG-CAACGCT------AAC-TCA--TGGG----AC-AA-TT---TCACTA------AA--TTACTT----T-AGGA-TTT-T-TCTA-A-T-A-------ATG---CCTA-GAA----GA--ATTGCTAC-GT-TT-GTTTG-AA-G-TTG----G-CA--CT--TT-ATG---G-C-A-TTTT--GCGAC--A------T-TTTG----------------ATA--TGCGC-C-TTC-ATT-G-GAAA--T-GT--GGCG-ATTTCC-GCC-TCGG-A-TTTTTA-A-AT----TTCTTGGGAACC--TT-CA-A-TTTTATAT-AAATTTT-ATTA--C-TT--TTTG--CAGAAAAC----TGAAGTTCTTTTG-TGACA-GTAA-CGTC-TTCTCTTTAGG-ATT--T-TT-GGAAATTCACAGTA--G-T-AAC-A---AGTAAATTAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGC-ATC--GGAAT-CC-AACATGtgccaaattagccaaaacggtaatttggcaat
gi|9 : tca--T---------------TTTC---AAAACTC-A-AAC--GA-GG--AAA--CATCCAAA---A-AA-GTAAGAC--CAGAATAGTCAAAAAA-AGTAAT--CCGCGAC--TTA------T-T-A--TGGC----TA-AA-TTA-CTCACTA------AA---TACTTAATGT-AGGC-TTTGT-CCAA-A-TAA-------ATG------A-GCCATCAGA--TTTG-TAT-GTCTT-G-TTG-AACG-TTGCACAG-CA--TTCCCC-ATG---G-CAA-TAGT--G-GAA--GATCAAAT-TTTT----------------CTAATTGAAC-C-ATC-ATA-GAGAAAG-T-ATCAGATG-AATTCC-GAT-TCAGCG-TTTTCA-GCTT----GT
gi|8 : ccttattttctctcctaccctttcttaacattaggtgagactctatttacagcaacgatagattccaactttaagcaataaataggttataaatacaggttcactttggttgcaaaagagcacatgaactttatccgcttgattagtgaaagattcaccgagtcttca---AAA--TC-AAAGCTGGAAGG--GAAAGCTTCAGAA---ATAAAGC--C-C--CAGAATG-TCGAA-AAC-GT--TAATG-CAATGTTTT----ATT-T-A--TGGG----AC-AA-T---CACACCA------AA--TTACTT----TCAAGA-TTC-T-TCAACA-T-A-------ATGAAGC--A-GACC---GA--TTTGTTAT-GT-TTTGTTTGGAA-G-TTT------CA--CT--TC-ATA---C-C-A-TTTTT-GCGAT--C------T-TTTT----------------CTA--TGCAA-CGATCGATT-G-GGAA--G-AG--GGTG-AACTCC--CT-TCAA-AGTTTTCG-A-TTTTTTGTTCTGGGAATCG-CT-CACA-ATTTATAC-ATATTTT-TCTA--T-TT----------GAAAACAG-A---AGTT-TCTCGCTGACT-GTAA-CGTC-TCCTCCGTAAG-A----T-TT-TTAGAATCAAGGTATTG-T-AGG-A---AGG-AATTAGATATT-AATA--TT-------TTA-TAT-AA---CC-CTT-GTT-C-GG---CATT-GGCAATG-GTGAAT-CC-AGCATGGCGGcaatgaacaaaattcgcttttaaca
gi|15 : ttaa-A--TGGG----AC-AAATTGTC--ACTA------A----------------------T-T-TCGA---T-A-------ATA---AC-A-GAA----GA--TTT---AC-G-----GTT-G-AA-G-TCA----C-CA---------------G-C-A-T-----GCGAC--G------T-TTT-------------------A--TGCGC-C-ATC-ATT-G-AAAA--G-AT--GGTGGAG--CC-GCCGTCAA-G-TTTTTC-A-AT----GTACT---AACC--TTTCA-A-TTTTTTAT-AAATT---ATTA--C-TT--------CGG-AAACAG-A---AGT-CTTTTG-TGATA-GTAA-CGTC-TCC-CTTTGGG-ATTTTT-TT-GGAAATTCAAAGTAT-G-C-AGC-A---GGGAAATTAGATGtaatgcagcataaacggtaataaatctggcaatg
gi|17 : tcGTTAC-GT-TT-GTTTG-AA-G-TTG----G-CA--TT---C-ATG---G-C-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAA--G-AT--GGCG-ATTTCC-GCC-TCAG-G-TTTTCA-A-TT----GTTCTGGGAACC--TT-CA-A-TTTTATAT-AAATTCT-ATTA--C-TT--TTTT--CGG-AAACAG----AAGCTCTTTTG-TGATA-GTAA-CGTC-TCCTCTTTAGG-AT---T-TT-GGAAATTAAAAGTAT-G-C-AGC-A---AGGAGATTAGACATTAAATA--TT-TTTT
gi|16 : GTTAC-GT-TT-GTTTG-AA-G-TTG----C-GA--CT--TC-ATG---G---A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAA--G-AT--GGCG-ATT-CC-GCC-TCAG-G-TTTTCA-A-TT----GTTCTGGGAACC--TT-CA-A-TTTTATAT-AAATTCT-ATTA--C-TT--TTTT--CGG-AAACAG----AAGCTCTTTTG-TGATA-GTAA-CGTC-TCCTCTTTAGG-A----T-TT-TGAAATTAAAAGTAT-G-C-AGC-GAGCAGGAGATTAGACATTAAATA--TT-TTTTttc
gi|14 : TTAC-GT-TT-GTTTG-AA-G-TTG----G-CA--CT--TC-ATG---G-C-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAA--G-AT--GGCG-ATT-CC-GCC-TCAG-G-TTTTCA-A-TT----GTTCTGGGA-CC--TT-CA-A-TTTTATAT-AAATTCT-ATTA--C-TT--TTTTTCCGG-AAACAG-A--AAGCTCTTTTG-TGATA-GTAA-CGTC-TCCTCTTTAGG-A----T-TT-GGAAATT-AAAGTAT-G-C-AGC-AGC-AGGAGATTAGACATTAAATATTTT-TTTTCCTTA-TAttc
gi|19 : TTAC-GT-TT-GTTTG-AA-G-TTG----G-CA--TT---C-ATG---G-C-A-TTT---GCGAC--G------T-TTTT----------------ATA--T-CGC-C-ATT-ATT-G-AAAA--G-AT--GGCG-ATT-CC-GCC-TCAG-G-TTTTCA-A-TT----GTTCTGGGAACC--TT-CA-ATTTTTATAT--AATTCT-ATTA--C-TT--TTTT--CGG-AAACAG----AAGCTCTTTTG-TGA-A-GT---CGTC-T-CTCTTTAGG-AT---T-TT-GGAAATT-AAAGTAT-G-C-AGC-A---AGGAGATTAGACATTAAATA--TT-TTTTata
gi|13 : AC-GT-TT-GTTTG-AA-G-TTG----G-CA--CT--TC-AGT---GGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAA--T-GT--GGCG-ATTTCC-GCC-TCGG-A-TTTTTA-A-TT----ATTCT-GGAACC--TT-CA-A--TTTATAT-AAATTTC-ATTA--C-TT--TTTG--TGGAAAACAG----AAGTT-TTTTG-TGATA-ATAA-CGTCTTCCTCTTTA-G-A----T-TT-TGAAATTCACAGTA--G-T-AAC-A---AGGAAATTAGATGTTAAATA---T-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GACGATC-GGGAAT-CC-AACATGGTGGATTAt
gi|25 : TTG-AA-G-TTG----A-CA--CT--TA-ATCAGGG-C-A-TTTC--GCGGA--T------TGTTTT----------------ATA--CAAAC-T-GTC-ATT-G-GAAA--C-AT--GGAT-ATTTGT-GCT-TTGT-A-TCTTCT-A-TT----GTTCTGGGAACC--TT-CA-C-TTtgcaaattagcaaaacggtcatatttctggcaat
gi|24 : -CA--CT--TC-ATG---G-C-A-TTTT--GCGAT--T------T-TTTTTTTTTTTTAAACTAAAAT---TGCGC-C-ATT-ATT-G-GAAAGATAGT--GGTG-ATTTCC-GCT-TCAG-G-CTTTCA-A-TT----GTTCTGGG-GCTGGTT-CA-C-TTTTATAC-ATATTTT-ATTA--C-TT--T
gi|22 : TATAC-AAATTCT-ATTAAAT-TT--TTTT--CGG-----------AAGTTCTTTTG-TGATA-GTAA-CATC-TCCTCTTTAGG-A----T-TTTGGAAATTCAAAGTGT-G-C-AGC-A---AGGAAATTAGATGTTAAATT--TG-TTTTCCTTA-TAT-AAT--CC-TAT-GTT-C-GG-C-CATT-GGCGATC-GGG-AT-CC-AATATGGCGGTTTAgggggggggggggttaaacgttcttt
gi|28 : CTTTCG-TGACT-GTAA-CGTC-TCCTCTTTAGG-AT---T-TT-TTAAATTCAAGGAA--T-TAAAC-A---TGGAAATTAGA-ACTAAATA--TT-TTTTCTTTA-TAT-AAT--CC-Ttgcacattagcaaaacagtaatatttctggcga
gi|26 : C-A---AGATAATTAG-TAGCAAGCA--TT-TTTTCCTCA-TA---GC--CC-TTT-GTTTC-GG-AACATT-GGCGATC-GGT-AT-CC-AATATG
gi|27 : CTAA-CAT-AAG--TC-TAT-GTT-T-GG-C-CATT-GGCGACC-AGGAAC-TC-Aaagtttatggcaattacaaaccggtaataatctggc
gi|30 : gttaaactaatatgTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC-GGGAGT-CC-AATATGGCGGTTTAtctatttgcggttttgcaaattaatcaattatacagtaaaatttctg
gi|31 : TA-TAT-AAT--CC-TTTCGTT-C-GG-C-CATT--GCAATC-GGGAGT-CC-AATATGtgcaaattagcaaaacggtaatatttctggcaat
gi|32 : TA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC--GGAGT--C-AATATGcggtttatgcaaattagcaaaacggtatatttctggcaatg
gi|33 : A-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT--GCAATC--GGAGT--C-AATATGcggtttatgcaaattagcaaaacggtaatattttggcaat
gi|34 : AT--CC-TTT-GTT-C-----------GGCGATC-GGGAATGCC-AATATTGCAcggtttatgcaaattagcaaaacggtaatatttctggca
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|29 ): AAGTTCAACTAATATGGGTTAACAGAACTGAGCGTTTGGTCCTTTAGTAAAAATTCACAGATATCGTCATTTTGAATCAAGCGAGGAAC
Unaligned ( gi|35 ): TCAATTGCTCAGGAGGAAATAAATTAATTCATTTTTGTACATATTTATTACTTGAGTGGGGGGGGGGGGG
Unaligned ( gi|36 ): ATTGTATGCATTTTCTCTGCATTTAAAACTTTTGTCTT
Alignments
lowQualScore : 3333333333333 44444444 11 1111 11111 111111 66666666666666666 1 1 1111 1111 11 222222222222 111111 4444444444444444444444444444444444444444 1111 66666666666666666666666666666666666666666666666 11 1 11111 22 222222222 2222 111111111 11111111111111111 2222 11
lowQualScore : 9999999999999 9 55555555 6 6 00 4444 66666 6 6 6 777777 5 1 77 55555555555555555 5 1 5 5 5 1111 4 4 8 5555 3 1 3 77 7 0 777777777777 3 000000 777777 44 0000000000000000000000000000000000000000 0000 3 77777 3 66666666666666666666666666666666666666666666666 44 55 6666 555 2 2 5 77777 0 6 3 1 11111 44 3 3 3 3 55555 22 999999999 6666 3 3 5555 888888 77 0 6666 3 3 3 3 77 3 3 3 666666666 44 77 2 2 2 2 2 2 555555 2 55 555 2 2 6 4 333 777777777 2 55555555555555555 22 2 2 2 2 2 33 666 2 0 1 2 2 2 4 2 9999 2 3 55 2 2 2 2 2 55 55 33 2 7 0 4444 2 2 2 2 2 888 0 00 2 666 5 33 2 2 2 22 2 2 2 2 2 2 2 2 4 2 4 6
lowQualScore : ............. . ........ . . .. .... ..... . . . ...... . . .. ................. . . . . . .... . . . .... . . . .. . . ............ . ...... ...... .. ........................................ .... . ..... . ............................................... .. .. .... ... . . . ..... . . . . ..... .. . . . . ..... .. ......... .... . . .... ...... .. . .... . . . . .. . . . ......... .. .. . . . . . . ...... . .. ... . . . . ... ......... . ................. .. . . . . . .. ... . . . . . . . . .... . . .. . . . . . .. .. .. . . . .... . . . . . ... . .. . ... . .. . . . .. . . . . . . . . . . . .
lowQualScore : 5555555555555 3 88888888 7 7 77 2222 77777 7 7 7 666666 7 0 99 66666666666666666 7 4 0 0 0 3333 4 4 9 1111 6 9 6 00 3 4 222222222222 1 222222 888888 11 3333333333333333333333333333333333333333 4444 1 77777 1 55555555555555555555555555555555555555555555555 22 77 1111 000 9 9 7 11111 7 2 1 8 88888 22 1 1 1 1 55555 33 666666666 5555 1 1 2222 888888 33 4 5555 1 3 3 3 99 3 3 3 444444444 33 99 4 4 4 2 2 2 000000 1 00 888 1 1 3 2 777 777777777 1 22222222222222222 99 1 1 1 1 1 22 999 2 7 8 2 2 2 4 2 2222 2 4 66 4 4 4 4 4 66 66 22 5 4 2 9999 4 4 4 4 4 888 2 11 2 999 3 22 4 1 2 99 1 2 2 2 2 2 2 2 4 4 1 0
consensus : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAGCGGCT--AG--GTA-CT-AATCAGGCCG----AC-----TTCT-GAACTTCATGT-ACC-TTTCA--TC--TTTGT-CCAANGGT--GGCCC---------GT-----AAGTAA-TT-AATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TA--AGTTAGGCATA--T---CTT-GGTTG--A--CT-------T-------T---G-----A----AATAGAATGGTAC----A-T-----TGGT-CC-------GGT--TGA--------A-AA---TT-ACC--GAA-T---CA--T--T----TTTT---AAA-TCA-A-GC-----GAGGAACC-TT-CAAAAAATGTAN----C--CA-GAATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAATT---T--ATGGG----A-CAA-TTGTCTCACTA------AA--TTACTT----T-AGGA-TTT-T-TCGA--A-T-A-ATG-NCC-A---GA-NGA--TTTGTTAC-G-T-TTGTTT-GAA-G-TTG----G-C-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGC-GC-CATC-ATT-G-GAAA-GAT---GGCG-ATTTCC-GCC-TC-GG-GTTTT-CAA----TT-GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AAGTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A---TTTTGGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AACATGGCGGNTTA
Reference ( family-1695 ) : NNNNNNNCAGTAGTATGGTTTAGCCGCCAAGGCCTAGTGGCC--AGGTGTA-CT-AACTAGGCCG----AC-----TTCT-GAACTTCATGT-ACC-TTTCA--TC--TTTGT-CCAANGGT--GGCCC---------GT-----AAGTAA-TT-AATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TA--AGTTAGGCATA--T---CTT-GGTTG--A--CT-------T-------T---G-----A----AATAGAATGGTAC----A-T-----TGGT-CC-------GGT--TGA--------A-AA---TT-ACC--GAA-----CA--T--T----TTTT---AAA-TCA-A-GC-----GAGGAACC-TT-CAAAAAATGTAN----C--CA-GAATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAANC---T--ATGGG----A-CAA-TTGTCTCACTA------AA--TTACTT----T-AGGA-TTT-T-TCGA--A-T-A-ATG-CCC-A---GA-NGA--TTTGTTAC-G-T-TTGTTT-GAA-G-TTG----G-C-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGC-GC-CATC-ATT-G-GAAA-NAT---GGCG-ATTTCC-GCC-TC-GG-GTTTT-CAA----TT-GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAGA---AAGTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A---TTTTGGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AATATGGCGGATTA
gi|1 : AGGCTTAGCGGCT--AG-------T-AG---GGTCT----AC-----TTCT-GAACTACGTGT-ACC-TTTCA--TCC-TTTGT-CCAAAGGT--GGCC-----------T-----TAGTAA-TT-AATCATCAA-CTT-AATTGGCAAGA----G-TCAGC-AAA-AAT----GATATCCA-CGTAAC-GGTAG-ACA-TGGTCGAATG-----------A-TC--AGT-AGGAATA--A---ATA-AGTTC--A--CT-------TCTTGCGTT---G-----A----AATAGAATGGTAA----AAT-----TGGT-C---------------A--------A-AA---TTCACC--GAGAT---CA--TCAT----TTTT---AAA-TCT-A-AC-----GAGAAACC-TT-CAAAA--TGTAG----C--TA-GAATA-TCATA-AA-CAGT--T--TG-CAACGTTTACTCA--T--GTGGGCCTCA-TAT-TTCTTTTAGTATACTTGAA--T-ATTT----T-A----TTT-T-TCGA--AAT-AGAAG-AAC-AAGAGA-AAA--ACTGTTAC-A-T-T-GTT--AAA-G-TTG----GGC-AA-CTT---CGA-TGAC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGC-GT-AATC-ATT-G-AAAA-GAT---GGCG-ATTTC--GCC-TC-GA-GTTTT-GAA----TT-GTTCTGGGAATC--TT-TA-CTTTTATAT-G-AA-TTTTAATA--C--TTAGTTTG--GAAAACAGA---A-GTTATTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A---TTTTGGAAATTCGAATTA-TGCAGC-A---AGGAAATTAGATGTTAAATA--TGATTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-C
gi|10 : tagagctagtatatt--T----TTTT---AAA-TCA-A-GC-----GAGGAACC-TT-CAAAAA-TGTAC----C--CA-GAATA-TCAAA-AA-CAGT--T--TG-CAACGCT-AACT---C--ATGGG----A-CAA-TT---TCACTA------AA--TTACTT----T-AGGA-TTT-T-TCTA--A-T-A-ATG-CCT-A---GA-AGA--ATTGCTAC-G-T-TTGTTT-GAA-G-TTG----G-C-A--CTT---T-A-TGGC-A-TTTT--GCGAC--A------T-TTTG----------------ATA--TGC-GC-CTTC-ATT-G-GAAA-TGT---GGCG-ATTTCC-GCC-TC-GG-ATTTT-TAA----AT-TTCTTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTTTATTA--C--TT--TTTGCAGAAAACTG----AAGTTCTTTTG-TGAC-AGTAA-CGTC-TTCTCTTTAGG-AT--TTTTGGAAATTCACAGTA--GTAAC-A---AGTAAATTAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGC-ATC--GGAAT-CC-AACATGttggaggtttatgcaaattagcaaaacggtaatattgctgacaa
gi|11 : tcaAGACCTAGCGGC--------TA-CT-AGTAGGGCCT----AC-----TTCT-GAACTTCATGT-ACC-TTTCAT-TC--TTTGT-CCATAGGT--GGCC-----------T-----AATTAA-TT-AATAATAAA-CTT-AATTGGCAAGAGTCAG-TAA---AAA-AAAT--G-ATATCCA-TGTAAC-GGTA-GACC-TGGTCGAAT-----------GA-TA--AG-TAGGAATA--A---ATA-AGTTC--A--CCTCTTGGGT-------T---G-----A----AAAAGATTGGTAC----A-T-----TGG----------------TGA--------A-AA---TTAACC--GAAAT---CA--TCAT----TTTT---AAA-TTG-A-GC-----GAGGAACC-TT-C-AATAATGTAG----C--CA-GAATA-TCAAA-AA--AGT--T--T-GCAACGTTTACTCCGGC--ATGGG----A-CAA-TT---TCACTA------AA--TTACTT----T-AG
gi|12 : gagctcatggagctagtataatCA-TATACC-GGTAA-ACC-TGACCGAATG-----------A-TA--CGT-AGGCATAAGTAAGTTT-GCTT------CT-------T-------G---G-----ATTTCAATAGAATGGTAC----T-T-----AGGT-T---------GT--TAATAGT----A-AACATTC-ACC--AAAGT---CA--TCAT----TCTT---AAA-TCA-A-GC-----CTGGGACC-TT-CAGAAA-TTTAA----A--CA-GAATA-TCAAA-A--CGGC--A--TG-CAACGCTTATTC------ATGAG----A-AAA-TTGT---ACTA------GA--TTACTT----T-AGGA-TTT-T-TCAA--A-T-A-ATG-AAC-G---GA-TGA--TTTTTTAT-G-T-TTGTTT-GAA-G-TTG----A-C-A--CTC---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGA-AC-CATC-TTT-G-
gi|13 : gttgtggagtttgcaaactttcacaatatttcaaaAC-G-T-TTGTTT-GAA-G-TTG----G-C-A--CTT---C-AGTGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGC-GC-CATC-ATT-G-GAAA-TGT---GGCG-ATTTCC-GCC-TC-GG-ATTTT-TAA----TT-ATTCT-GGAACC--TT-CA-A-TTTATAT-A-AA-TTTCATTA--C--TT--TTTGTGGAAAACAG----AAGTT-TTTTG-TGAT-AATAA-CGTCTTCCTCTTTA-G-A---TTTT-GAAATTCACAGTA--GTAAC-A---AGGAAATTAGATGTTAAATA---T-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GACGATC-GGGAAT-CC-AACATGGTGGATTA
gi|14 : TTAC-G-T-TTGTTT-GAA-G-TTG----G-C-A--CTT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGC-GC-CATT-ATT-G-AAAA-GAT---GGCG-ATT-CC-GCC-TC-AG-GTTTT-CAA----TT-GTTCTGGG-ACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--CTTTT--TTTCCGG-AAACAGA---AAGCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A----TTTGGAAATT-AAAGTA-TGCAGC-AGC-AGGAGATTAGACATTAAATATTTT-TTTTCCTTA-TAtgcaaattagcaaaacggtcatatttctggcaat
gi|15 : --ATGGG----A-CAAATTGTC--ACTA------A----------------------T-T-TCGATAA-T-A-A-----C-A---GA-AGA--TTT---AC-G-----GTT--GAA-G-T--------C-A--C-----C-A---GC-A-T-----GCGAC--G------T-TTT-------------------A--TGC-GC-CATC-ATT-G-AAAA-GAT---GGTGGAG--CC-GCCGTC-AA-GTTTTTCAA----T--GTACT---AACC--TTTCA-ATTTTTTAT-A-AA-TT--ATTA--C--TT------CGGAAA-CAGA---AG--TCTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTGGG-ATTTTTTTGGAAATTCAAAGTA-TGCAGC-A---GGGAAATTAGATGata
gi|16 : tcGTTAC-G-T-TTGTTT-GAA-G-TTG----C-G-A--CTT---C-A-TGG--A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGC-GC-CATT-ATT-G-AAAA-GAT---GGCG-ATT-CC-GCC-TC-AG-GTTTT-CAA----TT-GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AAGCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A---TTTT-GAAATTAAAAGTA-TGCAGC-GAGCAGGAGATTAGACATTAAATA--TT-TTTT
gi|17 : GTTAC-G-T-TTGTTT-GAA-G-TTG----G-C-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGC-GC-CATT-ATT-G-AAAA-GAT---GGCG-ATTTCC-GCC-TC-AG-GTTTT-CAA----TT-GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AAGCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A---TTTTGGAAATTAAAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTTttc
gi|18 : --TC--TTCGT-CCAAACGT--GGCTT---------AT-----ACGTCA-TT-GATAAT-AAACAT-AATTGGCAAGA---GG-CA-GT-GAA-AATT--G-TTATCAA-CGTAAC-GGTA-GACC-TGGTCGAATG----------TAGTAGCAG--AGACATA--T---ttc
gi|18 : tATG----------AA-CA--AGTT---CACT--T---CTC-GG--G--------------T-------T---G-----A----AATAGAATGGTTCATTAA-T-----TGGT-CCTTTTAAAGGC--TTA--------A-AA----T-AGT--GAA-----AA--T--T----ataacatttatgtctctggtagtaggcatgaacaagttcacttctcgggttgaaatagaatggttcattaattggtccttttaaaggcttaaaatagtgaaaattcacagacgtcatca
gi|19 : ttcttcgtccaaacgtggcttatacgtcattgataataaacataattggcaagaggcagtgaaaattgttatcaacgtaacggtagacctggtcgaatgtagtagcagagacatatataacatttatgtctctggtagtaggcTTAC-G-T-TTGTTT-GAA-G-TTG----G-C-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--T-C-GC-CATT-ATT-G-AAAA-GAT---GGCG-ATT-CC-GCC-TC-AG-GTTTT-CAA----TT-GTTCTGGGAACC--TT-CA-ATTTT-TAT-ATAA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AAGCTCTTTTG-TGA--AGT---CGTC-T-CTCTTTAGG-A---TTTTGGAAATT-AAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTTcacagacgtcatca
gi|2 : TAGTATG---TAGTTGCCAAGGC---GTGGC---AGGTGTAACT-AATCAGAC-G----AC-----TTCTAGAACTTCATGT-GCC-TTTCA--TA--TTTGT-CCAATGGT--GG-CC---------GT-----AAGTAATTT-AATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATG----------GA-TG--AGTTAGGCATA--T---CTT-GGTTGAAA--CT-------T-------T---G-----A----AATAAAATGGTAC----A-T-----TGGTCCC-------GGC--TGA--------AGAA---T-------GAA-----TA--T--T----TTTT---AAA-TCA-A-GC-----GA-GAGCC-TTCCAAAAAATGT-C----C--CAGGAATA-TCAAA-AA-CAGT--T--T-GCAACGTTTAACT---C--ATGGG----A-CAG-TTGTCCCACTA------AA--TTACTT----T-AGGATTTT-T-TCGA--A-T-A-ATG-CCT-AT--GA-CGAT-TTTGTTACTT-T-TTGTTT-GAA-G--TG----G-CGA--CTTC--C-A-AGGC-A-TTTTTGGCGAC--G------T-TTTT----------------ATA--TGC-GCAAATC-ATTGG-GAAA-TGT---GGCG-ATTTCCGGCC-TC-GGAATTTT-TAT----TG-GTTCTGGGGAAC--TT-CA-ATTTTATAC-A-AG-TTTTATTA--CT-TT--TTTGCGGTAAACAGAATTAAGTTCTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTAGG-A---ATTTGG-AATTCAAAGTA--GTAGC-A---A-GAAATCAGATG-TAAATA--TT-TTTTTCTTA-TAT-AATTCCT-TTT-GTT-CGGG-C-CATT-GGCGATCGGGGAATGCC-AACATGGCAGATTt
gi|20 : CAGTAGTATGGTTTAGCC-----GGCCTAGTGGCT--A---GTA-CTGAACTAGGCCGACTAAC-----TTCT-GAACTTCATGTCACC-TTTCAATTC--TTTGTCCCAATGGTTGGGCCCCCCGG----GTGGCCCAAGTAA-TTAAATATA-AA-CTTAAATTGGCAAAG---AG-TAAATGGAA-AATT--G-ATATCCA-T----CGGGTATGACC-TGGTCGAAT-----------GA-TA--G--TAGGTATA--T---CTT-GGTTG--A--AT-------T-------T---
gi|21 : agagctCAGTAGTATGGTT-AGCCG-----GCCTAGTGGCTTTAG---TA-CT-GACTAGGCCG----ACCTACATTCT-GAACTTCATGT-ACCCTTTCA--TTCTTTTGT-CCAATGGT--GGCCCCCCAGGGGGGCCC---AAGTAA-TT-AATAATAAA-CTT-AATTGGCAAG----AG-TAAAT-GAA-AATT--G-ATATCCA-TG-----GGTTAGACC-TGGTCGAAT-----------GA-TA--G--TAGGTATA--T---CTTGGGTTG--A--AT-------T-------ttaa
gi|22 : gagctTATAC-A-AA-TTCTATTAAAT--TT--TTTTCGGAA-----------GTTCTTTTG-TGAT-AGTAA-CATC-TCCTCTTTAGG-A---TTTTGGAAATTCAAAGTG-TGCAGC-A---AGGAAATTAGATGTTAAATT--TG-TTTTCCTTA-TAT-AAT--CC-TAT-GTT-C-GG-C-CATT-GGCGATC-GGG-AT-CC-AATATGGCGGTTTA
gi|23 : AAGA----G-TCAGT-GAA-AATT--GA-TATCCA-CGTAAC-GGCA-GACC-TGG-CGAATGAAAAAGAATAAA-TA--AGTT---CATT--T---CTT-GG--G--G-----------T-------A---G-----A----AATAGAA--GTAC----A-T-----T-------------GGT--TGA--------A-AA---TT-AACAGAAA-----CATTT--T----TTTT---AAA-TCG-ACGT-----GA-GAACC-TT--AAAAAATGTAG----CATTA-GAATG-TCAAA-AA-CAGT--T--T-GCAACGtgcacattagcaaaacagtaatatttctggcga
gi|24 : -C-A--CTT---C-A-TGGC-A-TTTT--GCGAT--T------T-TTTTTTTTTTTTAAACTAAAAT---TGC-GC-CATT-ATT-G-GAAA-GATAGTGGTG-ATTTCC-GCT-TC-AG-GCTTT-CAA----TT-GTTCTGGG-GCTGGTT-CA-CTTTTATAC-A-TA-TTTTATTA--C--TT--T
gi|25 : TT-GAA-G-TTG----A-C-A--CTTAATC-A-GGGC-A-TTTC--GCGGA--T------TGTTTT----------------ATA--CAA-AC-TGTC-ATT-G-GAAA-CAT---GGAT-ATTTGT-GCT-TT-GT-ATCTT-CTA----TT-GTTCTGGGAACC--TT-CA-CTTgggggggggggggttaaacgttcttt
gi|26 : C-A---AGATAATTAGTAGC-AAGCA--TT-TTTTCCTCA-TA---GC--CC-TTT-GTTTC-GG-AACATT-GGCGATC-GGT-AT-CC-AATATG
gi|27 : CTAA-CAT-AAG--TC-TAT-GTT-T-GG-C-CATT-GGCGACC-AGGAAC-TC-Aaagtttatggcaattacaaaccggtaataatctggc
gi|28 : gttaaactaatatgCTTTCG-TGAC-TGTAA-CGTC-TCCTCTTTAGG-A---TTTTTTAAATTCAAGGAA-TTAAAC-A---TGGAAATTAGA-ACTAAATA--TT-TTTTCTTTA-TAT-AAT--CC-Ttctatttgcggttttgcaaattaatcaattatacagtaaaatttctg
gi|29 : -T-----TGGT-CC-------TTTAGTAA--------A-AA---TT-CAC--AGA-----TA--T--CGTCATTTT---GAA-TCA-A-GC-----GAGGAAC
gi|3 : aagttcaactaatatgggttaacagaactgagcgtCAATAGTATG---TAGTTGC---AGC---GTGGAC--AGGTGTA-CT-AATCAAGACG----AC-----TTCT-GAACTTCATGT-GCC-TTTCA--TA--TTTGT-CCAATGGT--GGCC----------GT-----AAGTAA-TTTAATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATG----------GA-TG--AGTTAGGCATA--T---CTT-GGTTG--AAACT-------T-------T---G-----A----AATAAAATGGTAC----A-T-----TGGT-CCC------GGC--TGA--------AGAA---T-------GAA-----TA--T--T----TTTT---AAA-TCACA-GC-----GACGGCCT-TC-CAAAAAATGTCG----C--CG-GAATA-TCAAAGAA-CAGT--T--TGGCAACGTTTAAGC---T--ATGGG----A-CAG-TTGTCCCACTA------AA--TTACTT----T-AGGA-TTT-T-TCGA--A-T-A-ATG-CCT-A---GA-CGA--TTTGTTAC-G-T-TTGTTT-GAA-G-TTG----G-C-A--TTT---C-A-TTGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGC-GC-CATC-ATT-G-GAAA-TGT---GGCG-ATTTCC-GCC-TC-GG-ATTTT-TAA----TT-GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGTAAACAGATT-AAGTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A----TTTGGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AACATGGCAGATTA
gi|30 : gtttcaaTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC-GGGAGT-CC-AATATGGCGGTTTAa
gi|31 : TA-TAT-AAT--CC-TTTCGTT-C-GG-C-CATT--GCAATC-GGGAGT-CC-AATAT-GCGGTTTAtgcaaattagcaaaacggtaatatttctggcaat
gi|32 : TA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC--GGAGT--C-AATAT-GCGGTTTAtgcaaattagcaaaacggtatatttctggcaatg
gi|33 : A-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT--GCAATC--GGAGT--C-AATAT-GCGGTTTAtgcaaattagcaaaacggtaatattttggcaat
gi|34 : AT--CC-TTT-GTT-C-----------GGCGATC-GGGAATGCC-AATATTGCtgcaaattagcaaaacggtaatatttctggca
gi|4 : ATATT-AA-TTT-ATGTGACCAGA---AGATAAGC-GGA-ACTTCCAAACTTTAACTATACC-GGTAG-ACC-AGAGCGAATG-----------A-CA--AGT-AGGCATA--T---CTT-GG--G--------------T-------T---G-----A----AATAGAATAGTAC----T-T-----TGGT-CTTTTA---GG----AA--------A-AA---TTCACC--GAGGTCTTCA--T--T----CCT----AGA-TCA-A--T-----GAGGAACC-TT-CAAAAATTA-AA----C--CA-GAATG-TCAAA-AA-TGGT--A--TG-CAACGTTTA-TT---G--ATGGG----A-CAA-TT---TC--TG------AA--T-----------AGGG-TTT-T-CCAC--A-C-A-ATG-AAC-A---GA-CGA--TTTGTTAT-G-T-TTGTTT-GAA-G-TTT----T-C-A--CTT---C-A-TTGC-A-ATTT--GCTAT--C------T-TTTC----------------CTT--TAC-AC-TATC-ATT-G-GAAA-TAT---GGTG-ATTTGC-GCT-TC-AG-ATTTT-CAA----TT-GTTCTGGGAACC--TT-CA-CTTTT-CAC-A-TA-TCCTTTTGC-C--TT--TTTTTGGAAAACAAA---AAGTTTCTTTG-TGAC-TATAA-CATC-TCCTCTTTAGG-A---TTTTAGAAATTCAAGGTA-TGTAGC-A---TGGAAATTAGATGTTAAATA--TA-TTCTTCTTA-TAT-ATT--TC-TTT-GCC-C-GG-C-CATT-GGTGATA-GGAGAT-CC-AATATGGCGGCTTAatggcgttatgccaaattagcaaaacggtaaactggcaag
gi|5 : cctttttttatcgtagctttctttttaggggA-TATACC-GGTAG-ACC-TGACCGAATG-----------A-TA--CGT-AGGCATA--A---GTA-AGTTC--G--CT-------T-------CTTGG-----ATTTCAATAGAATGGTACT---A-T-----AGGT-CTTATA---AGT--TAA--------A-AT---TC-ACC--CAAGT---CA--TCAT----TTTT---AAA-TCA-A-GC------------C-TT-CGAAA--TTTAA----A--CA-GAATA-TCAAA-A--CGGC--A--TG-CAACGCTTA-TT---T--ATGAG----A-TAA-TTGT---ACTA------GA--TTACTT----T-AGGA-TTG-T-TCAA--A-T-A-ATG-AAC-G---GA-TGATTTTTTTTAT-G-T-TTGTTT-GAA-G-TTG----A-C-A--CTT---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGA-AC-CATC-TTT-G-AAAA-GCT---GGTG-A------------------CTT-CAA----TT------------------CA-TTTTTATAC-A-TA-TGTTATTG--C-------TTGAGGGAACT--T---AAGTTCTTTTG-CGAC-TGTAA-CATC-TCCTGATTAGG-A---TATTAGAAATTCAAGGCA-CTTAGC-----TTCAAATAAGAAGTTTAATA--TT-TTTTCCTTA-TAC-AAA--TT-TTC-CTT-T-GA-C-CATT-CACGATG-GGGAAT-TT-AATATGGTGGTTTtgtaaattagcaagacggtaatatttctggcaatg
gi|6 : taatctatataaacagaaatgtagtggagtttgcaaactttcacaatatttcaagtAC----A-T-----TGGT-CC-------GGT--TGA--------A-AA---AT------GAT-----CA--T--T----TTTTTTAAAA-TCA-A-GC-----GAGGAACCCTT-CAAAAAATGTAC----C--TA-GAATA-TCAAA-AA-CAGT--T--T-GCAA-GTTTAA-C---TACATGGG----ACCAA-T--TTTCACTA------AAATTTACTT----T-CGGA--TT-T-TGGA--A-T-A-ATG-CCTAA---GA-AGA--TTTGTTAC-G-T-TTGTTT-GAA-G-TTG----G-C-A--TTT---C-A-TGGC-A-TTTT--GCGACCGG------T-TTTT----------------ATA--TGC-GC-CATC-ATT-G-GAAA-TGT---GGCG-ATTTCC-GCC-TC-GG-TTTTT-ATA----TTAGTTCTTGG-------T-CA-ATTTTATAC-A-AATTTTTATTA--C--TT--TTTGCGGAAAACAG------CTTCTTTTG-TGATAAGTAA-CGTC-TCCTCTTTAGGAA---TTTTGGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTT-CTTA-TAT-AAT--CC-TTT-GTT-C-GGCC-CATTGGGCGATC-GGGAAT-CCAAACATGGCGGATTAgttgaaattagcaaaattgtaatatttctggcaatg
gi|7 : AC----A-T-------GT-C--------GGT--TGA--------A-AA---T-------GAT-----CA--T--T----TT-----AAA-TCA-A-GC-----GAGGAACC-TT-CAAAAA-TGTAC----C--TA-GAATA-TCAAA-AAACAGT--T--TTGCAACGTT-AACT---C--ATGGG----A-CAA-TT---TCACTA------AAA-TTACTT----C--GGA-TTT-TATGGA--A-T-A-ATG-CCT-A---GA-AGA--TTTGTTAC-G-T-TTGTTT-GAA-GTTTG----G-C-A--CTT---C-A-TTGC-ATTTTT--GCGAC--G------T-TTTT----------------ATA--TGC-GC-CATC-ATT-G-GAAT-G-----GGCG-A--TCC-G-C-TC-GG-ATTTT-TAAT---TT-GTCTTGG----------CA-ATTTTATATGA-AA-TTTTA--A--C--TT--TTTGCGGAAAAC-------AGTTCTTTTG-TG---AATAACCGTC-TCCTCTTTAGG-A---TTTTGGAAATTCAAAGTA-GTTAGCAA---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTATTATAAAT--CCTTTT-GTT-C-GG-C-C-TT-GGCGATC-GGGAAT-CC-AACAT-GCGGATTAtgcaaattagcaaaaacggtaatatttctggcaat
gi|8 : ---AAA-TCA-AAGCTGGAAGGGAAAGC-TT-CAGAAA---TAAAGCCC--CA-GAATG-TCGAA-AA-C-GT--TAATG-CAATGTTTTATT---T--ATGGG----A-CAA----TCACACCA------AA--TTACTT----TCAAGA-TTC-T-TCAAC-A-T-A-ATGAAGC-A---GACCGA--TTTGTTAT-GTT-TTGTTTGGAA-G-TT-----T-C-A--CTT---C-A-TACC-ATTTTT--GCGAT--C------T-TTTT----------------CTA--TGCAAC-GATCGATT-G-GGAA-GAG---GGTG-AACTCC--CT-TCAAA-GTTTT-CGATTTTTT-GTTCTGGGAATCG-CT-CACAATTTATAC-A-TA-TTTTTCTA--T--TT--------GAAAACAG----AAGTT-TCTCGCTGAC-TGTAA-CGTC-TCCTCCGTAAG-AT--TTTTAGAA--TCAAGGTATTGTAGG-A---AGG-AATTAGATATT-AATA--TT-------TTA-TAT-AA---CC-CTT-GTT-C-GG---CATT-GGCAATG-GTGAAT-CC-AGCATGGCGGtgccaaattagccaaaacggtaatttggcaat
gi|9 : ttaaAATA----------AA-TA--GGTTATAAATA--C---A---GGTTC--A--CT-------T-------T---GGTTGCA----AA-AGA---GCAC----A-TGAACTTTAT-CC-------GCT--TGATTAGTGAAA-GA---TTCACC--GAGTCTT-CA--T--T----TTCA---AAACTCA-A-AC-----GAGGAAACATC-CAAAAAA-GTAAGA--C--CA-GAATAGTCAAA-AA-AAGTAAT--CCGCGAC--TTA--T---T--ATGGC----T-AAA-TTA-CTCACTA------AA---TACTTAATGT-AGGC-TTTGT-CCAA--A-TAA-ATGAGCC-A---TC-AGA--TTTG-TAT-G-TCTTG-TT-GAACG-TTGCACAG-C-ATTCCC---C-A-TGGCAA-TAGT--G-GAA--GATCAAAT-TTTT----------------CTAATTGA-AC-CATC-ATA-GAGAAAGTATCA-GATG-AATTCC-GAT-TC-AGCGTTTT-CAGC---TT-GTtaatgcagcataaacggtaataaatctggcaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): TCAATTGCTCAGGAGGAAATAAATTAATTCATTTTTGTACATATTTATTACTTGAGTGGGGGGGGGGGGG
Unaligned ( gi|36 ): ATTGTATGCATTTTCTCTGCATTTAAAACTTTTGTCTT
Alignments
lowQualScore : 2222 2222 3333333333 1111 11111 1111111 77777777777777777 1 1 1111 1111 11 222222222222 111111 444444444444444444444444444444444 1111 444444444444444444444444444444444444444444444444444 11111 22 1111111 2222 11111111 11111111111111111 1111 11
lowQualScore : 4444 0000 1 44 0 9999999999 6 77 4444 66666 6 6 6 7777777 5 1 77 22222222222222222 7 5 5 5 1111 4 4 8 5555 3 1 3 77 7 0 777777777777 3 000000 777777 44 000000000000000000000000000000000 3 0000 77777 3 999999999999999999999999999999999999999999999999999 3 6666 33 2 5 77777 0 2 3 3 9 11111 44 3 3 3 3 55555 22 8888888 6666 3 3 7777 888888 777 7777777 3 3 3 3 3 3 3 88888888 3 44 77 2 2 2 2 2 2 2 4444 4 22 555 2 2 6 2 555 777777777 2 55555555555555555 22 2 2 2 2 2 2 666 2 3 2 2 6 2 4 6666 3 55 2 2 2 2 2 33 77 33 5 9 2222 2 2 2 2 2 2 4 4444 00 2 666 5 33 2 2 2 22 2 2 2 2 2 2 2 2 4 2 6666666 2 2 1
lowQualScore : .... .... . .. . .......... . .. .... ..... . . . ....... . . .. ................. . . . . .... . . . .... . . . .. . . ............ . ...... ...... .. ................................. . .... ..... . ................................................... . .... .. . . ..... . . . . . ..... .. . . . . ..... .. ....... .... . . .... ...... ... ....... . . . . . . . ........ . .. .. . . . . . . . .... . .. ... . . . . ... ......... . ................. .. . . . . . . ... . . . . . . . .... . .. . . . . . .. .. .. . . .... . . . . . . . .... .. . ... . .. . . . .. . . . . . . . . . . ....... . . .
lowQualScore : 2222 4444 0 22 7 2222222222 7 88 2222 77777 7 7 7 6666666 7 0 99 77777777777777777 1 0 0 0 3333 4 4 9 1111 6 9 6 00 3 4 222222222222 1 222222 888888 11 333333333333333333333333333333333 3 4444 77777 1 000000000000000000000000000000000000000000000000000 1 5555 99 9 7 11111 7 9 1 1 9 88888 22 1 1 1 1 55555 33 3333333 5555 1 1 0000 888888 777 7777777 3 3 3 3 3 3 3 11111111 3 33 99 4 4 4 2 2 2 2 7777 2 99 888 1 1 3 1 888 777777777 1 22222222222222222 99 1 1 1 1 1 2 999 2 4 2 2 7 2 4 9999 4 66 4 4 4 4 4 22 99 22 6 6 2222 5 4 4 4 4 4 7 3333 11 2 999 3 22 4 1 2 99 1 2 2 2 2 2 2 2 4 2 3333333 2 5 0
consensus : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAGCGGCT--AGGT---ACT-AATCAGGCCG----AC-----TTCT-GAACTTCATGT-ACC-TTTCA--T-C--TTTGT-CCAANGGT--GGCC----------GT-----AAGTAATT-AATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TA--AGTTAGGCATA--T---CTT-GGTTG--A--CT-------TT---G-----A----AATAGAATGGT-AC----AT-----TGGT-CC----GGT--TGA--------A-AA---TT-ACCG-A-A----TCA--TCAT-TTTT---AAA--TCA-A-GC-----GAGGAA-CC-TT-CAAAAAATGTAN----C--CA-GAATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAATT---CATGGG----A-CAA-TTGTCTCACTA------AA--TTACTT----T-AGGA-TTT-T-TCG-A-AT-A-ATG-NC-C---A-GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCGGTTTA
Reference ( family-1695 ) : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAGCGGCT--AGGT---ACT-AATCAGGCCG----AC-----TTCT-GAACTTCATGT-ACC-TTTCA--T-C--TTTGT-CCAANGGT--GGCCC---------GT-----AAGTAATT-AATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TA--AGTTAGGCATA--T---CTT-GGTTG--A--CT-------TT---G-----A----AATAGAATGGT-AC----AT-----TGGT-CC----GGT--TGA--------A-AA---TT-ACCG-A-A----TCA--T--T-TTTT---AAA--TCA-A-GC-----GAGGAA-CC-TT-CAAAAAATGTAN----C--CA-GAATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAATT---TATGGG----A-CAA-TTGTCTCACTA------AA--TTACTT----T-AGGA-TTT-T-TCG-A-AT-A-ATG-NC-C---A-GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCGGNTTA
gi|1 : --AGGCTTAGCGGCT--AG-------T-AG---GGTCT----AC-----TTCT-GAACTACGTGT-ACC-TTTCA--TCC--TTTGT-CCAAAGGT--GGCC-----------T-----TAGTAATT-AATCATCAA-CTT-AATTGGCAAG----AG-TCAGC-AAA-AAT----GATATCCA-CGTAAC-GGTA-GACA-TGGTCGAAT-----------GA-TC--AG-TAGGAATA--A---ATA-AGTTC--A--CTTCTTGCGTT---G-----A----AATAGAATGGTAAA----AT-----TGGT-C------------A--------A-AA---TTCACCG-AGA----TCA--TCAT-TTTT---AAA--TCT-A-AC-----GAGAAA-CC-TT-C--AAAATGTAG----C--TA-GAATA-TCATA-AA-CAGT--T--T-GCAACGTTTACTCA--TGTGGGCCTCA-TAT-TTCTTTTAGTATACTTGAA---TATTT----T----A-TTT-T-TCGAA-AT-AGAAG-AA-CAAGA-GAA-AA--ACTGTTAC-A--TT-G-TTA-AA-G-TTGG----GCAA--CTT---CGA-TGAC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGT-A-ATC-ATT-G-AAAAG-AT---GGCG-ATTT-C-GCC-TCGA-GTTTT-GAA-TT----GTTCTGGGAATC--TT-TA-CTTTTATAT-G-AA-TTTTAATA--C--TTAGTTT--GGAAAACAG----AA-GTTATTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCGAATTA-TGCAGC-A---AGGAAATTAGATGTTAAATA--TGATTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CT------------TGGAGGTTTA
gi|10 : tagagctagtatatt----TCA--T--T-TTT----AAA--TCA-A-GC-----GAGGAA-CC-TT-CAAAAA-TGTAC----C--CA-GAATA-TCAAA-AA-CAGT--T--TG-CAACGCT-AACT---CATGGG----A-CAA-TT---TCACTA------AA--TTACTT----T-AGGA-TTT-T-TCT-A-AT-A-ATG-CC-T---A-GAA-GA--ATTGCTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---T-A-TGGC-A-TTTT--GCGAC--A------T-TTTG----------------ATA--TGCGC-C-TTC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-AT----TTCTTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTTTATTA--C--TT--TTTGCAGAAAACTG----AA-GTTCTTTTG-TGAC-AGTAA-CGTC-TTCTCTTTAGG-ATTTTT---GGAAATTCACAGTA--GTAAC-A---AGTAAATTAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGC-ATC--GGAAT-CC-AA-----C-A-TGtgcaaattagcaaaacggtaatattgctgacaa
gi|11 : --AGACCTAGCGGCT--A-------CT-AGTAGGGCCT----AC-----TTCT-GAACTTCATGT-ACC-TTTCAT-T-C--TTTGT-CCATAGGT--GGCC-----------T-----AATTAATT-AATAATAAA-CTT-AATTGGCAAGAGTCAG-TAA---AAA-AAAT--G-ATATCCA-TGTAAC-GGTA-GACC-TGGTCGAAT-----------GA-TA--AG-TAGGAATA--A---ATA-AGTTC--A--CCTCTTGGGTT---G-----A----AAAAGATTGGT-AC----AT-----TGG-------------TGA--------A-AA---TTAACCGAA-A----TCA--TCAT-TTTT---AAA--TTG-A-GC-----GAGGAA-CC-TT-C-AATAATGTAG----C--CA-GAATA-TCAAA-AA--AGT--T--T-GCAACGTTTACTCCGGCATGGG----A-CAA-TT---TCACTA------AA--TTACTT----T-AG
gi|12 : gagctcatggagctagtataatCA-TATACC-GGTAA-ACC-TGACCGAATG-----------A-TA--CGT-AGGCATAAGTAAGTTT-GCTT------CT-------TG---G-----ATTTCAATAGAATGGT-AC----TT-----AGGT-T------GT--TAATAGT----A-AACATTC-ACCA-A-AG---TCA--TCAT-TCTT---AAA--TCA-A-GC-----CTGGGA-CC-TT-CAGAAA-TTTAA----A--CA-GAATA-TCAAA-A--CGGC--A--TG-CAACGCTTA-TT---CATGAG----A-AAA-TTGT---ACTA------GA--TTACTT----T-AGGA-TTT-T-TCA-A-AT-A-ATG-AA-C---G-GAT-GA--TTTTTTAT-GT-TT-GTTTG-AA-G-TT-G----AC-A--CTC---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGAAC-C-ATC-TTT-G-
gi|13 : gttgtggagtttgcaaactttcacaatatttcaaaAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-AGTGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-TT----ATTCT-GGAACC--TT-CA-A-TTTATAT-A-AA-TTTCATTA--C--TT--TTTGTGGAAAACAG----AA-GTT-TTTTG-TGAT-AATAA-CGTCTTCCTCTTTA-G-A-TTTT----GAAATTCACAGTA--GTAAC-A---AGGAAATTAGATGTTAAATA---T-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GACGATC-GGGAAT-CC-AA-----C-A-TGGTGGATTA
gi|14 : TTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-A-TTCC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGG-ACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--CTTTT--TTTCCGG-AAACAGA---AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A--TTT---GGAAATT-AAAGTA-TGCAGC-AGC-AGGAGATTAGACATTAAATATTTT-TTTTCCTTA-TAtgcaaattagcaaaacggtcatatttctggcaat
gi|15 : T---CATGGG----A-CAAATTGTC--ACTA------A----------------------T-T-TCG-A--T-A-ATA-AC-----A-GAA-GA--TTT---AC-G-----GTT-G-AA-G-T--------C-A--C-----C-A---GC-A-T-----GCGAC--G------T-TTT-------------------A--TGCGC-C-ATC-ATT-G-AAAAG-AT---GGTGGAG--CC-GCCGTCAA-GTTTTTCAA-T-----GTACT---AACC--TTTCA-ATTTTTTAT-A-AA-TT--ATTA--C--TT------CGGAAA-CAG----AA-GT-CTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTGGG-A-TTTTTTTGGAAATTCAAAGTA-TGCAGC-A---GGGAAATTAGATGata
gi|16 : GTTAC-GT-TT-GTTTG-AA-G-TT-G----CG-A--CTT---C-A-TGG--A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATT-CC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT----GAAATTAAAAGTA-TGCAGC-GAGCAGGAGATTAGACATTAAATA--TT-TTTT
gi|17 : GTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATTTCC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTAAAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTTttc
gi|18 : --T-C--TTCGT-CCAAACGT--GGCTT---------AT-----ACGTCATT-GATAAT-AAACAT-AATTGGCAAGA---GG-CA-GT-GAA-AATT--G-TTATCAA-CGTAAC-GGTA-GACC-TGGTCGAATG----------TAGTAGCAG--AGACATA--T---ttc
gi|18 : tATG----------AA-CA--AGTT---CACT--T---CTC-GG--G--------------TT---G-----A----AATAGAATGGT-TCATTAAT-----TGGT-CC----ataacatttatgtctctggtagtaggcatgaacaagttcacttctcgggttgaaatagaatggttcattaattggtccttttaaaggcttaaaatagtgaaaattcacagacgtcatca
gi|19 : ttcttcgtccaaacgtggcttatacgtcattgataataaacataattggcaagaggcagtgaaaattgttatcaacgtaacggtagacctggtcgaatgtagtagcagagacatatataacatttatgtctctggtagtaggcTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--T-CGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATT-CC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTT-TAT-ATAA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGA--AGT---CGTC-T-CTCTTTAGG-A-TTTT---GGAAATT-AAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTTttttaaaggcttaaaatagtgaaaattcacagacgtcatca
gi|2 : TAGTATG---TAGTTGCCAAGGC---GTGGC---AGGTGTAACT-AATCAGAC-G----AC-----TTCTAGAACTTCATGT-GCC-TTTCA--T-A--TTTGT-CCAATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATG----------GA-TG--AGTTAGGCATA--T---CTT-GGTTGAAA--CT-------TT---G-----A----AATAAAATGGT-AC----AT-----TGGTCCC----GGC--TGA--------AGAA---T-----G-A-A----T-A--T--T-TTTT---AAA--TCA-A-GC-----GA-GAG-CC-TTCCAAAAAATGT-C----C--CAGGAATA-TCAAA-AA-CAGT--T--T-GCAACGTTTAACT---CATGGG----A-CAG-TTGTCCCACTA------AA--TTACTT----T-AGGATTTT-T-TCG-A-AT-A-ATG-CC-T---ATGAC-GAT-TTTGTTACTTT-TT-GTTTG-AA-G--T-G----GCGA--CTTC--C-A-AGGC-A-TTTTTGGCGAC--G------T-TTTT----------------ATA--TGCGCAA-ATC-ATTGG-GAAAT-GT---GGCG-ATTTCCGGCC-TCGGAATTTT-TAT-TG----GTTCTGGGGAAC--TT-CA-ATTTTATAC-A-AG-TTTTATTA--CT-TT--TTTGCGGTAAACAGAATTAA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTAGG-A-ATTT---GG-AATTCAAAGTA--GTAGC-A---A-GAAATCAGATG-TAAATA--TT-TTTTTCTTA-TAT-AATTCCT-TTT-GTT-CGGG-C-CATT-GGCGATCGGGGAATGCC-AA-----C-A-TGGCAGATTt
gi|20 : CAGTAGTATGGTTTAGCC-----GGCCTAGTGGCT--A-GT---ACTGAACTAGGCCGACTAAC-----TTCT-GAACTTCATGTCACC-TTTCAATT-C--TTTGTCCCAATGGTTGGGCCCCCCGG----GTGGCCCAAGTAATTAAATATA-AA-CTTAAATTGGCAAAG---AG-TAAATGGAA-AATT--G-ATATCCA-T----CGGGTATGACC-TGGTCGAAT-----------GA-TA--G--TAGGTATA--T---CTT-GGTTG--A--AT-------TT---
gi|21 : agagctCAGTAGTATGGTT-AGCCG-----GCCTAGTGGCTTTAG-T---ACT-GACTAGGCCG----ACCTACATTCT-GAACTTCATGT-ACCCTTTCA--T-TCTTTTGT-CCAATGGT--GGCCCCCCAGGGGGGCCC---AAGTAATT-AATAATAAA-CTT-AATTGGCAAG----AG-TAAAT-GAA-AATT--G-ATATCCA-TG-----GGTTAGACC-TGGTCGAAT-----------GA-TA--G--TAGGTATA--T---CTTGGGTTG--A--AT-------Tttaa
gi|22 : gagctTATAC-A-AA-TTCTATTAAAT--TT--TTTTCGGAA------------GTTCTTTTG-TGAT-AGTAA-CATC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTG-TGCAGC-A---AGGAAATTAGATGTTAAATT--TG-TTTTCCTTA-TAT-AAT--CC-TAT-GTT-C-GG-C-CATT-GGCGATC-GGG-AT-CC-AA-----T-A-TGGCGGTTTA
gi|23 : AAGA----G-TCAGT-GAA-AATT--GA-TATCCA-CGTAAC-GGCA-GACC-TGG-CGAATGAAAAAGAATAAA-TA--AGTT---CATT--T---CTT-GG--G--G-----------TA---G-----A----AATAGAA--GT-AC----AT-----T----------GGT--TGA--------A-AA---TTAACAG-A-A----ACATTT--T-TTTT---AAA--TCG-ACGT-----GA-GAA-CC-TT--AAAAAATGTAG----CATTA-GAATG-TCAAA-AA-CAGT--T--T-GCAACGtgcacattagcaaaacagtaatatttctggcga
gi|24 : C-A--CTT---C-A-TGGC-A-TTTT--GCGAT--T------T-TTTTTTTTTTTTAAACTAAAAT---TGCGC-C-ATT-ATT-G-GAAAG-ATAGTGGTG-ATTTCC-GCT-TCAG-GCTTT-CAA-TT----GTTCTGGG-GCTGGTT-CA-CTTTTATAC-A-TA-TTTTATTA--C--TT--T
gi|25 : TTG-AA-G-TT-G----AC-A--CTTAATC-A-GGGC-A-TTTC--GCGGA--T------TGTTTT----------------ATA--CAAAC-T-GTC-ATT-G-GAAAC-AT---GGAT-ATTTGT-GCT-TTGT-ATCTT-CTA-TT----GTTCTGGGAACC--TT-CA-CTTgggggggggggggttaaacgttcttt
gi|26 : C-A---AGATAATTAGTAGC-AAGCA--TT-TTTTCCTCA-TA---GC--CC-TTT-GTTTC-GG-AACATT-GGCGATC-GGT-AT-CC-AA-----T-A-TG
gi|27 : CTAA-CAT-AAG--TC-TAT-GTT-T-GG-C-CATT-GGCGACC-AGGAAC-TC-AT-----CTATTTGCGGTTTaagtttatggcaattacaaaccggtaataatctggc
gi|28 : gttaaactaatatgCTTTCG-TGAC-TGTAA-CGTC-TCCTCTTTAGG-A-TTTT---TTAAATTCAAGGAA-TTAAAC-A---TGGAAATTAGA-ACTAAATA--TT-TTTTCTTTA-TAT-AAT--CC-Ttgcaaattaatcaattatacagtaaaatttctg
gi|29 : T-----TGGT-CC----TTTAGTAA--------A-AA---TTCACAG-ATA----TCG--T--CATTTT---GAA--TCA-A-GC-----GAGGAA-C
gi|3 : aagttcaactaatatgggttaacagaactgagcgtCAATAGTATG---TAGTTGC--AG--C--GTGGAC--AGGTGT-ACT-AATCAAGACG----AC-----TTCT-GAACTTCATGT-GCC-TTTCA--T-A--TTTGT-CCAATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATG----------GA-TG--AGTTAGGCATA--T---CTT-GGTTG--AAACT-------TT---G-----A----AATAAAATGGT-AC----AT-----TGGT-CCC---GGC--TGA--------AGAA---T-----G-A-A----T-A--T--T-TTTT---AAA--TCACA-GC-----GACGGC-CT-TC-CAAAAAATGTCG----C--CG-GAATA-TCAAAGAA-CAGT--T--TGGCAACGTTTAAGC---TATGGG----A-CAG-TTGTCCCACTA------AA--TTACTT----T-AGGA-TTT-T-TCG-A-AT-A-ATG-CC-T---A-GAC-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--TTT---C-A-TTGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGTAAACAGATT-AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A--TTT---GGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCAGATTA
gi|30 : gtttcaaTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC-GGGAGT-CC-AA-----T-A-TGGCGGTTTAa
gi|31 : TA-TAT-AAT--CC-TTTCGTT-C-GG-C-CATT--GCAATC-GGGAGT-CC-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtaatatttctggcaat
gi|32 : TA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC--GGAGT--C-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtatatttctggcaatg
gi|33 : A-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT--GCAATC--GGAGT--C-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtaatattttggcaat
gi|34 : AT--CC-TTT-GTT-C-----------GGCGATC-GGGAATGCC-AATATTGC-A-TGGCGtgcaaattagcaaaacggtaatatttctggca
gi|4 : ATATT-AA-TTT-ATGTGACCAGA---AGATAAGC-GGA-ACTTCCAAACTTTAACTATACC-GGTAG-ACC-AGAGCGAATG-----------A-CA--AGT-AGGCATA--T---CTT-GG--G--------------TT---G-----A----AATAGAATAGT-AC----TT-----TGGT-CTTTTAGG----AA--------A-AA---TTCACCG-A-GGTCTTCA--T--T-CCT----AGA--TCA-A--T-----GAGGAA-CC-TT-CAAAAATTA-AA----C--CA-GAATG-TCAAA-AA-TGGT--A--TG-CAACGTTTA-TT---GATGGG----A-CAA-TT---TC--TG------AA--T-----------AGGG-TTT-T-CCA-C-AC-A-ATG-AA-C---A-GAC-GA--TTTGTTAT-GT-TT-GTTTG-AA-G-TT-T----TC-A--CTT---C-A-TTGC-A-ATTT--GCTAT--C------T-TTTC----------------CTT--TACAC-T-ATC-ATT-G-GAAAT-AT---GGTG-ATTTGC-GCT-TCAG-ATTTT-CAA-TT----GTTCTGGGAACC--TT-CA-CTTTT-CAC-A-TA-TCCTTTTG--CC-TT--TTTTTGGAAAACAA----AAAGTTTCTTTG-TGAC-TATAA-CATC-TCCTCTTTAGG-A-TTTT---AGAAATTCAAGGTA-TGTAGC-A---TGGAAATTAGATGTTAAATA--TA-TTCTTCTTA-TAT-ATT--TC-TTT-GCC-C-GG-C-CATT-GGTGATA-GGAGAT-CC-AA-----T-A-TGGCGGCTTAttatgccaaattagcaaaacggtaaactggcaag
gi|5 : cctttttttatcgtagctttctttttaggggA-TATACC-GGTAG-ACC-TGACCGAATG-----------A-TA--CGT-AGGCATA--A---GTA-AGTTC--G--CT-------TCTTGG-----ATTTCAATAGAATGGT-ACT---AT-----AGGT-CTTATAAGT--TAA--------A-AT---TC-ACCC-A-AG---TCA--TCAT-TTTT---AAA--TCA-A-GC-------------C-TT-CGAAA--TTTAA----A--CA-GAATA-TCAAA-A--CGGC--A--TG-CAACGCTTA-TT---TATGAG----A-TAA-TTGT---ACTA------GA--TTACTT----T-AGGA-TTG-T-TCA-A-AT-A-ATG-AA-C---G-GAT-GATTTTTTTTAT-GT-TT-GTTTG-AA-G-TT-G----AC-A--CTT---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGAAC-C-ATC-TTT-G-AAAAG-CT---GGTG-A-----------------CTT-CAA-TT---------------------CA-TTTTTATAC-A-TA-TGTTATTG--C-------TTGAGG-GAACTT----AA-GTTCTTTTG-CGAC-TGTAA-CATC-TCCTGATTAGG-A-TATT---AGAAATTCAAGGCA-CTTAGC-----TTCAAATAAGAAGTTTAATA--TT-TTTTCCTTA-TAC-AAA--TT-TTC-CTT-T-GA-C-CATT-CACGATG-GGGAAT-TT-AA-----T-A-TGGTGGTTTtgtaaattagcaagacggtaatatttctggcaatg
gi|6 : taatctatataaacagaaatgtagtggagtttgcaaactttcacaatatttcaagt-AC----AT-----TGGT-CC----GGT--TGA--------A-AA---AT------G-A----TCA--T--T-TTTTTTAAAA--TCA-A-GC-----GAGGAACCC-TT-CAAAAAATGTAC----C--TA-GAATA-TCAAA-AA-CAGT--T--T-GCAA-GTTTAACTA--CATGGG----ACCAA-T--TTTCACTA------AAATTTACTT----T-CGGA--TT-T-TGG-A-AT-A-ATG-CC-TA--A-GAA-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--TTT---C-A-TGGC-A-TTTT--GCGACCGG------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-TTTTT-ATA-TTA---GTTCTTGG-------T-CA-ATTTTATAC-A-AATTTTTATTA--C--TT--TTTGCGGAAAACAG-------CTTCTTTTG-TGATAAGTAA-CGTC-TCCTCTTTAGGAA-TTTT---GGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTT-CTTA-TAT-AAT--CC-TTT-GTT-C-GGCC-CATTGGGCGATC-GGGAAT-CCAAA-----C-A-TGGCGGATTAgttgaaattagcaaaattgtaatatttctggcaatg
gi|7 : -AC----AT-------GT-C-----GGT--TGA--------A-AA---T-------G-A----TCA--T--T-TT-----AAA--TCA-A-GC-----GAGGAA-CC-TT-CAAAAA-TGTAC----C--TA-GAATA-TCAAA-AAACAGT--T--TTGCAACGTT-AACT---CATGGG----A-CAA-TT---TCACTA------AAA-TTACTT----C--GGA-TTT-TATGG-A-AT-A-ATG-CC-T---A-GAA-GA--TTTGTTAC-GT-TT-GTTTG-AA-GTTT-G----GC-A--CTT---C-A-TTGC-ATTTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAATG------GGCG-A--TCC-G-C-TCGG-ATTTT-TAATTT----GTCTTGG----------CA-ATTTTATATGA-AA-TTTTA--A--C--TT--TTTGCGGAAAAC-------A-GTTCTTTTG-TG---AATAACCGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-GTTAGCAA---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTATTATAAAT--CCTTTT-GTT-C-GG-C-C-TT-GGCGATC-GGGAAT-CC-AA-----C-A-T-GCGGATTAtgcaaattagcaaaaacggtaatatttctggcaat
gi|8 : ---AAA--TCA-AAGCTGGAAGGGAAA-GC-TT-CAGAAA---TAAAGCCC--CA-GAATG-TCGAA-AA-C-GT--TAATG-CAATGTTTTATT---TATGGG----A-CAA-T---CACACCA------AA--TTACTT----TCAAGA-TTC-T-TCA-ACAT-A-ATG-AAGC---A-GACCGA--TTTGTTAT-GT-TTTGTTTGGAA-G-TT-T-----C-A--CTT---C-A-TACC-A-TTTTT-GCGAT--C------T-TTTT----------------CTA--TGCAA-CGATCGATT-G-GGAAG-AG---GGTG-AACTCC--CT-TCAAAGTTTT-CGA-TTTTTTGTTCTGGGAATCG-CT-CACAATTTATAC-A-TA-TTTTTCTA--T--TT--------GAAAACAG----AA-GTT-TCTCGCTGAC-TGTAA-CGTC-TCCTCCGTAAG-ATTTTT---AGAA--TCAAGGTATTGTAGG-A---AGG-AATTAGATATT-AATA--TT-------TTA-TAT-AA---CC-CTT-GTT-C-GG---CATT-GGCAATG-GTGAAT-CC-AG-----C-A-TGGCGGtgccaaattagccaaaacggtaatttggcaat
gi|9 : ttaaAATA----------AA-TA--GGTTATAAATA--C---A---GGTTC--A--CT-------TT---GGTTGCA----AA-AGA---GC-AC----ATGAACTTTAT-CC----GCT--TGATTAGTGAAA-GA---TTCACCG-A-G----TCT--TCAT-TTTC---AAAACTCA-A-AC-----GAGGAA-ACATC-CAAAAAA-GTAAGA--C--CA-GAATAGTCAAA-AA-AAGTAAT--CCGCGAC--TTA--T---TATGGC----T-AAA-TTA-CTCACTA------AA---TACTTAATGT-AGGC-TTTGT-CCA-A-ATAA-ATGAGC-C---A-TCA-GA--TTTG-TAT-GTCTT-G-TTG-AACG-TT-GCACAGC-ATTCCC---C-A-TGGCAA-TAGT--G-GAA--GATCAAAT-TTTT----------------CTAATTGAAC-C-ATC-ATA-GAGAAAGTATCA-GATG-AATTCC-GAT-TCAGCGTTTT-CAGCTT----GTtaatgcagcataaacggtaataaatctggcaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): TCAATTGCTCAGGAGGAAATAAATTAATTCATTTTTGTACATATTTATTACTTGAGTGGGGGGGGGGGGG
Unaligned ( gi|36 ): ATTGTATGCATTTTCTCTGCATTTAAAACTTTTGTCTT
Alignments
lowQualScore : 2222 222 3333333333 2222222222 111111 66666666666666666 1 1 1 1111 11111 11 222222222222 111111 44444444444444444444444444444444444444 1111 5555555555555555555555555555555555555555 1 11111 22 111111 333333333333 1111111111 11111111111111111 1111 11
lowQualScore : 4444 444 1 44 0 9999999999 6 77 1111111111 6 6 6 777777 5 1 77 55555555555555555 1 1 5 0 5 1111 4 4 8 44444 3 1 3 77 7 0 777777777777 3 000000 777777 44 00000000000000000000000000000000000000 0000 3 77777 0000000000000000000000000000000000000000 0 2 6666 33 2 5 77777 6 3 1 11111 44 3 3 3 3 55555 22 666666 3 3 555 3 3 444444444444 77 6666 3 3 3 3 3 3 3 3 4444444444 44 77 2 2 2 2 2 2 666666 2 55 555 2 2 6 2 555 777777777 2 55555555555555555 22 2 2 2 2 2 2 666 2 3 2 2 6 2 4 6666 3 55 2 2 2 2 2 33 77 33 2 9 2222 2 2 2 2 2 2 4 4444 00 2 666 5 33 2 2 2 22 2 2 2 2 2 2 2 2 4 2 6666666 2 2 0
lowQualScore : .... ... . .. . .......... . .. .......... . . . ...... . . .. ................. . . . . . .... . . . ..... . . . .. . . ............ . ...... ...... .. ...................................... .... . ..... ........................................ . . .... .. . . ..... . . . ..... .. . . . . ..... .. ...... . . ... . . ............ .. .... . . . . . . . . .......... .. .. . . . . . . ...... . .. ... . . . . ... ......... . ................. .. . . . . . . ... . . . . . . . .... . .. . . . . . .. .. .. . . .... . . . . . . . .... .. . ... . .. . . . .. . . . . . . . . . . ....... . . .
lowQualScore : 2222 222 0 22 7 2222222222 7 88 8888888888 7 7 7 666666 7 0 99 44444444444444444 4 4 0 0 0 3333 4 4 9 44444 6 9 6 00 3 4 222222222222 1 222222 888888 11 33333333333333333333333333333333333333 4444 1 77777 7777777777777777777777777777777777777777 4 8 1111 99 9 7 11111 2 1 8 88888 22 1 1 1 1 55555 33 444444 1 1 444 1 1 777777777777 33 5555 1 3 3 3 3 3 3 3 9999999999 33 99 4 4 4 2 2 2 444444 1 00 888 1 1 3 1 888 777777777 1 22222222222222222 99 1 1 1 1 1 2 999 2 4 2 2 7 2 4 9999 4 66 4 4 4 4 4 22 99 22 5 6 2222 5 4 4 4 4 4 7 3333 11 2 999 3 22 4 1 2 99 1 2 2 2 2 2 2 2 4 2 3333333 2 5 1
consensus : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAGCGGCT--AG-T---ACT-AATCAGGCCGAC-----T----TCT-GAACTTCATGT-ACC-TTTCA--TC--TTTGTCC-AANGGT--GGCC----------GT-----AAGTAATT-AATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TA--AGTTAGGCATA--T---CTT-GGTTGA--CT-------T-------T---G-----A----AATAGAATGGTAC----A-T-----TGGTCC----GGT--TGA--------A-AA---TT-ACCG-A-A-TCATCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAAATGTAN----C--CAG-AATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAACT---CATG-GGA-C---A-A-TTGTCTC-------ACTAAA--TTACTT----T-AGGA-TTT-T-TCGA-A-T-A-ATG-NC-C-A---GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCGGTTTA
Reference ( family-1695 ) : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAGCGGCT--AGGT---ACT-AATCAGGCCGAC-----T----TCT-GAACTTCATGT-ACC-TTTCA--TC--TTTGTCC-AANGGT--GGCC----------GT-----AAGTAATT-AATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TA--AGTTAGGCATA--T---CTT-GGTTGA--CT-------T-------T---G-----A----AATAGAATGGTAC----A-T-----TGGTCC----GGT--TGA--------A-AA---TT-ACCG-A-A-TCATCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAAATGTAN----C--CAG-AATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAATT---CATG-GGA-C---A-A-TTGTCTC-------ACTAAA--TTACTT----T-AGGA-TTT-T-TCGA-A-T-A-ATG-NC-C-A---GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCGGTTTA
gi|1 : --AGGCTTAGCGGCT--AG-------T-AG---GGTCTAC-----T----TCT-GAACTACGTGT-ACC-TTTCA--TCC-TTTGTCC-AAAGGT--GGCC----------TT-----A-GTAATT-AATCATCAA-CTTAA-TTGGCAAGA----G-TCAGC-AAA-AAT----GATATCCA-CGTAAC-GGTAG-ACA-TGGTCGAATG-----------A-TC--AGT-AGGAATA--A---ATA-AGTTCA--CT-------TCTTGCGTT---G-----A----AATAGAATGGTAA----AAT-----TGGTC------------A--------A-AA---TTCACCG-AGA-TCATCATTTTT----AAA--TCT-A-AC-----GAGAAACC-TTC-AAAA--TGTAG----C--TAG-AATA-TCATA-AA-CAGT--T--TG-CAACGTTTA-CT---CATGTGGG-CCTCATA-TT-TCTTTTAGTATACTTGA--ATATTT----T-A----TTT-T-TCGA-AAT-AGAAG-AA-C-AAGAGAA-AA--ACTGTTAC-AT-T--GTT-A-AA-G-TTG----GGC-AA-CTT---CGA-TGAC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGT-A-ATC-ATT-G-AAAAG-AT---GGCG-ATTTC--GCC-TCGA-GTTTT-GAA-TT----GTTCTGGGAATC--TT-TA-CTTTTATAT-G-AA-TTTTAATA--C--TTAGTTTG--GAAAACAG----AA-GTTATTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCGAATTA-TGCAGC-A---AGGAAATTAGATGTTAAATA--TGATTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CT------------TGGAGGTTTA
gi|10 : tagagctagtatattTCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAA-TGTAC----C--CAG-AATA-TCAAA-AA-CAGT--T--TG-CAACGCT-AACT---CATG-GGA-C---A-A-TT---TC-------ACTAAA--TTACTT----T-AGGA-TTT-T-TCTA-A-T-A-ATG-CC-T-A---GAA-GA--ATTGCTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--CTT---T-A-TGGC-A-TTTT--GCGAC--A------T-TTTG----------------ATA--TGCGC-C-TTC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-AT----TTCTTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTTTATTA--C--TT--TTTGCAGAAAACTG----AA-GTTCTTTTG-TGAC-AGTAA-CGTC-TTCTCTTTAGG-ATTTTT---GGAAATTCACAGTA--GTAAC-A---AGTAAATTAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGC-ATC--GGAAT-CC-AA-----C-A-TGtgcaaattagcaaaacggtaatattgctgacaa
gi|11 : --AGACCTAGCGGCT--A-------CT-AGTAGGGCCTAC-----T----TCT-GAACTTCATGT-ACC-TTTCAT-TC--TTTGTCC-ATAGGT--GGCC-----------T-----AATTAATT-AATAATAAA-CTTAA-TTGGCAAGAGTCAG-TAA---AAA-AAAT--G-ATATCCA-TGTAAC-GGTA-GACC-TGGTCGAAT-----------GA-TA--AG-TAGGAATA--A---ATA-AGTTCA--CCTCTTGGGT-------T---G-----A----AAAAGATTGGTAC----A-T-----TGG------------TGA--------A-AA---TTAACCGAA-A-TCATCATTTTT----AAA--TTG-A-GC-----GAGGAACC-TTC--AATAATGTAG----C--CAG-AATA-TCAAA-AA--AGT--T--T-GCAACGTTTACTCCGGCATG-GGA-C---A-A-TT---TC-------ACTAAA--TTACTT----T-AG
gi|12 : gagctcatggagctagtataatCA-TATACC-GGTAA-ACC-TGACCGAATG-----------A-TA--CGT-AGGCATAAGTAAGTTT-GCTT----CT-------T-------G---G-----ATTTCAATAGAATGGTAC----T-T-----AGGTT------GT--TAATAGT----A-AACATTC-ACCA-A-AGTCATCATTCTT----AAA--TCA-A-GC-----CTGGGACC-TTC-AGAAA-TTTAA----A--CAG-AATA-TCAAA-A--CGGC--A--TG-CAACGCTTA-TT---CATG-AGA-A---A-A-TTGT----------ACTAGA--TTACTT----T-AGGA-TTT-T-TCAA-A-T-A-ATG-AA-C-G---GAT-GA--TTTTTTAT-GT-TT-GTTTG-AA-G-TTG----A-C-A--CTC---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGAAC-C-ATC-TTT-G-
gi|13 : gttgtggagtttgcaaactttcacaatatttcaaaAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--CTT---C-AGTGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-TT----ATTCT-GGAACC--TT-CA-A-TTTATAT-A-AA-TTTCATTA--C--TT--TTTGTGGAAAACAG----AA-GTT-TTTTG-TGAT-AATAA-CGTCTTCCTCTTTA-G-A-TTTT----GAAATTCACAGTA--GTAAC-A---AGGAAATTAGATGTTAAATA---T-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GACGATC-GGGAAT-CC-AA-----C-A-TGGTGGATTA
gi|14 : TTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--CTT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-A-TTCC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGG-ACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--CTTTT--TTTCCGG-AAACAGA---AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A--TTT---GGAAATT-AAAGTA-TGCAGC-AGC-AGGAGATTAGACATTAAATATTTT-TTTTCCTTA-TAtgcaaattagcaaaacggtcatatttctggcaat
gi|15 : T---CATG-GGA-C---A-AATTGTC---------ACTAA----------------------T-T-TCGA---T-A-ATA-AC---A---GAA-GA--TTT---AC-G-----GTT-G-AA-G-T--------C-A--C-----C-A---GC-A-T-----GCGAC--G------T-TTT-------------------A--TGCGC-C-ATC-ATT-G-AAAAG-AT---GGTGGAG--CC-GCCGTCAA-GTTTTTCAA-T-----GTACT---AACC--TTTCA-ATTTTTTAT-A-AA-TT--ATTA--C--TT------CGGAAA-CAG----AA-GT-CTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTGGG-A-TTTTTTTGGAAATTCAAAGTA-TGCAGC-A---GGGAAATTAGATGata
gi|16 : GTTAC-GT-TT-GTTTG-AA-G-TTG----C-G-A--CTT---C-A-TGG--A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATT-CC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT----GAAATTAAAAGTA-TGCAGC-GAGCAGGAGATTAGACATTAAATA--TT-TTTT
gi|17 : GTTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATTTCC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTAAAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTTttc
gi|18 : --TC--TTCGTCC-AAACGT--GGCTT---------AT-----ACGTCATT-GATAAT-AAACATAA-TTGGCAAGA---GG-CA-GT-GAA-AATT--GT-TATCAA-CGTAAC-GGTAG-ACC-TGGTCGAATG----------TAGTAGCAG--AGACATA--T---ttc
gi|18 : tATG----------AA-CA--AGTT---CACT--T---CTC-GG--G------------T-------T---G-----A----AATAGAATGGTTCATTAA-T-----TGGTCC----ataacatttatgtctctggtagtaggcatgaacaagttcacttctcgggttgaaatagaatggttcattaattggtccttttaaaggcttaaaatagtgaaaattcacagacgtcatca
gi|19 : ttcttcgtccaaacgtggcttatacgtcattgataataaacataattggcaagaggcagtgaaaattgttatcaacgtaacggtagacctggtcgaatgtagtagcagagacatatataacatttatgtctctggtagtaggcTTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--T-CGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATT-CC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTT-TAT-ATAA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGA--AGT---CGTC-T-CTCTTTAGG-A-TTTT---GGAAATT-AAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTTttttaaaggcttaaaatagtgaaaattcacagacgtcatca
gi|2 : TAGTATG---TAGTTGCCAAGGC---GTGGC---AGGTGTAACT-AATCAGAC-GAC-----T----TCTAGAACTTCATGT-GCC-TTTCA--TA--TTTGTCC-AATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATG----------GA-TG--AGTTAGGCATA--T---CTT-GGTTGAAACT-------T-------T---G-----A----AATAAAATGGTAC----A-T-----TGGTCCC---GGC--TGA--------AGAA---T-----G-A-A-T-AT--TTTTT----AAA--TCA-A-GC-----GAG-AGCC-TTCCAAAAAATGT-C----C--CAGGAATA-TCAAA-AA-CAGT--T--TG-CAACGTTTAACT---CATG-GGA-C---A-G-TTGTCCC-------ACTAAA--TTACTT----T-AGGATTTT-T-TCGA-A-T-A-ATG-CC-T-AT--GAC-GAT-TTTGTTACTTT-TT-GTTTG-AA-G--TG----G-CGA--CTTC--C-A-AGGC-A-TTTTTGGCGAC--G------T-TTTT----------------ATA--TGCGCAA-ATC-ATTGG-GAAAT-GT---GGCG-ATTTCCGGCC-TCGGAATTTT-TAT-TG----GTTCTGGGGAAC--TT-CA-ATTTTATAC-A-AG-TTTTATTA--CT-TT--TTTGCGGTAAACAGAATTAA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTAGG-A-ATTT---GG-AATTCAAAGTA--GTAGC-A---A-GAAATCAGATG-TAAATA--TT-TTTTTCTTA-TAT-AATTCCT-TTT-GTT-CGGG-C-CATT-GGCGATCGGGGAATGCC-AA-----C-A-TGGCAGATTt
gi|20 : CAGTAGTATGGTTTAGCCG-----GCCTAGTGGCT--AG-T---ACTGAACTAGGCCGAC-----TAACTTCT-GAACTTCATGTCACC-TTTCAATTC--TTTGTCCCAATGGTTGGGCCCCCCGG----GTGGCCCAAGTAATT-AAATAT-AAACTTAAATTGGCAAAG---AG-TAAATGGAA-AATT--G-ATATCCA-T----CGGGTATGACC-TGGTCGAAT-----------GA-TA--G--TAGGTATA--T---CTT-GGTTGA--AT-------T-------T---
gi|21 : agagctCAGTAGTATGGTT-AGCCG-----GCCTAGTGGCTTTAG-T---ACT-GACTAGGCCGACCTACAT----TCT-GAACTTCATGT-ACCCTTTCA--TTCTTTTGTCC-AATGGT--GGCCCCCCAGGGGGGCCC---AAGTAATT-AATAATAAA-CTTAA-TTGGCAAG----AG-TAAAT-GAA-AATT--G-ATATCCA-TG-----GGTTAGACC-TGGTCGAAT-----------GA-TA--G--TAGGTATA--T---CTTGGGTTGA--AT-------T-------ttaa
gi|22 : gagctTATAC-A-AA-TTCTATTAAAT--TT--TTTTCGGAA------------GTTCTTTTG-TGAT-AGTAA-CATC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTG-TGCAGC-A---AGGAAATTAGATGTTAAATT--TG-TTTTCCTTA-TAT-AAT--CC-TAT-GTT-C-GG-C-CATT-GGCGATC-GGG-AT-CC-AA-----T-A-TGGCGGTTTA
gi|23 : AAGA----G-TCAGT-GAA-AATT--GA-TATCCA-CGTAAC-GGCA-GACC-TGG-CGAATGAAAAAGAATAAA-TA--AGTT---CATT--T---CTT-GG--GG-----------T-------A---G-----A----AATAGAA--GTAC----A-T-----T---------GGT--TGA--------A-AA---TTAACAG-A-A-ACATTTTTTTT----AAA--TCG-ACGT-----GA-GAACC-TT--AAAAAATGTAG----CATTAG-AATG-TCAAA-AA-CAGT--T--T-GCAACGtgcacattagcaaaacagtaatatttctggcga
gi|24 : -C-A--CTT---C-A-TGGC-A-TTTT--GCGAT--T------T-TTTTTTTTTTTTAAACTAAAAT---TGCGC-C-ATT-ATT-G-GAAAG-ATAGTGGTG-ATTTCC-GCT-TCAG-GCTTT-CAA-TT----GTTCTGGG-GCTGGTT-CA-CTTTTATAC-A-TA-TTTTATTA--C--TT--T
gi|25 : TTG-AA-G-TTG----A-C-A--CTTAATC-A-GGGC-A-TTTC--GCGGA--T------TGTTTT----------------ATA--CAAAC-T-GTC-ATT-G-GAAAC-AT---GGAT-ATTTGT-GCT-TTGT-ATCTT-CTA-TT----GTTCTGGGAACC--TT-CA-CTTgggggggggggggttaaacgttcttt
gi|26 : C-A---AGATAATTAGTAGC-AAGCA--TT-TTTTCCTCA-TA---GC--CC-TTT-GTTTC-GG-AACATT-GGCGATC-GGT-AT-CC-AA-----T-A-TGA-AGTTTA
gi|27 : CTAA-CAT-AAG--TC-TAT-GTT-T-GG-C-CATT-GGCGACC-AGGAAC-TC-AT-----CTATTTGCGGTTTtggcaattacaaaccggtaataatctggc
gi|28 : gttaaactaatatgCTTTCG-TGAC-TGTAA-CGTC-TCCTCTTTAGG-A-TTTT---TTAAATTCAAGGAA-TTAAAC-A---TGGAAATTAGA-ACTAAATA--TT-TTTTCTTTA-TAT-AAT--CC-Ttgcaaattaatcaattatacagtaaaatttctg
gi|29 : -T-----TGGTCC----TTTAGTAA--------A-AA---TTCACAG-ATA-TCGTCATTTT-----GAA--TCA-A-GC-----GAGGAAC
gi|3 : aagttcaactaatatgggttaacagaactgagcgtCAATAGTATG---TAGTTGC--AG--C--GTGGAC--AGGTGT-ACT-AATCAAGACGAC-----T----TCT-GAACTTCATGT-GCC-TTTCA--TA--TTTGTCC-AATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATG----------GA-TG--AGTTAGGCATA--T---CTT-GGTTGAAACT-------T-------T---G-----A----AATAAAATGGTAC----A-T-----TGGTCCC---GGC--TGA--------AGAA---T-----G-A-A-T-AT--TTTTT----AAA--TCACA-GC-----GACGGCCT-TCC-AAAAAATGTCG----C--CGG-AATA-TCAAAGAA-CAGT--T--TGGCAACGTTTAAGC---TATG-GGA-C---A-G-TTGTCCC-------ACTAAA--TTACTT----T-AGGA-TTT-T-TCGA-A-T-A-ATG-CC-T-A---GAC-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--TTT---C-A-TTGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGTAAACAGATT-AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A--TTT---GGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCAGATTA
gi|30 : gtttcaaTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC-GGGAGT-CC-AA-----T-A-TGGCGGTTTAa
gi|31 : TA-TAT-AAT--CC-TTTCGTT-C-GG-C-CATT--GCAATC-GGGAGT-CC-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtaatatttctggcaat
gi|32 : TA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC--GGAGT--C-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtatatttctggcaatg
gi|33 : A-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT--GCAATC--GGAGT--C-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtaatattttggcaat
gi|34 : AT--CC-TTT-GTT-C-----------GGCGATC-GGGAATGCC-AATATTGC-A-TGGCGtgcaaattagcaaaacggtaatatttctggca
gi|4 : ATATT-AA-TTTAT-GTGACCAGA---AGATAAGC-GGA-ACTTCCAAACTTTAACTATACC-GGTAG-ACC-AGAGCGAATG-----------A-CA--AGT-AGGCATA--T---CTT-GG--G------------T-------T---G-----A----AATAGAATAGTAC----T-T-----TGGTCTTTTAGG----AA--------A-AA---TTCACCG-A-GGTCTTCATTCCT----AGA--TCA-A--T-----GAGGAACC-TTC-AAAAATTA-AA----C--CAG-AATG-TCAAA-AA-TGGT--A--TG-CAACGTTTA-TT---GATG-GGA-C---A-A-TT---TC---------TGAA--T-----------AGGG-TTT-T-CCAC-A-C-A-ATG-AA-C-A---GAC-GA--TTTGTTAT-GT-TT-GTTTG-AA-G-TTT----T-C-A--CTT---C-A-TTGC-A-ATTT--GCTAT--C------T-TTTC----------------CTT--TACAC-T-ATC-ATT-G-GAAAT-AT---GGTG-ATTTGC-GCT-TCAG-ATTTT-CAA-TT----GTTCTGGGAACC--TT-CA-CTTTT-CAC-A-TA-TCCTTTTG--CC-TT--TTTTTGGAAAACAA----AAAGTTTCTTTG-TGAC-TATAA-CATC-TCCTCTTTAGG-A-TTTT---AGAAATTCAAGGTA-TGTAGC-A---TGGAAATTAGATGTTAAATA--TA-TTCTTCTTA-TAT-ATT--TC-TTT-GCC-C-GG-C-CATT-GGTGATA-GGAGAT-CC-AA-----T-A-TGGCGGCTTAttatgccaaattagcaaaacggtaaactggcaag
gi|5 : cctttttttatcgtagctttctttttaggggA-TATACC-GGTAG-ACC-TGACCGAATG-----------A-TA--CGT-AGGCATA--A---GTA-AGTTCG--CT-------T-------CTTGG-----ATTTCAATAGAATGGTACT---A-T-----AGGTCTTATAAGT--TAA--------A-AT---TC-ACCC-A-AGTCATCATTTTT----AAA--TCA-A-GC------------C-TTC-GAAA--TTTAA----A--CAG-AATA-TCAAA-A--CGGC--A--TG-CAACGCTTA-TT---TATG-AGA-T---A-A-TTGT----------ACTAGA--TTACTT----T-AGGA-TTG-T-TCAA-A-T-A-ATG-AA-C-G---GAT-GATTTTTTTTAT-GT-TT-GTTTG-AA-G-TTG----A-C-A--CTT---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGAAC-C-ATC-TTT-G-AAAAG-CT---GGTG-A-----------------CTT-CAA-TT---------------------CA-TTTTTATAC-A-TA-TGTTATTG--C-------TTGAGG-GAACTT----AA-GTTCTTTTG-CGAC-TGTAA-CATC-TCCTGATTAGG-A-TATT---AGAAATTCAAGGCA-CTTAGC-----TTCAAATAAGAAGTTTAATA--TT-TTTTCCTTA-TAC-AAA--TT-TTC-CTT-T-GA-C-CATT-CACGATG-GGGAAT-TT-AA-----T-A-TGGTGGTTTtgtaaattagcaagacggtaatatttctggcaatg
gi|6 : taatctatataaacagaaatgtagtggagtttgcaaactttcacaatatttcaagtAC----A-T-----TGGTCC----GGT--TGA--------A-AA-------------A-TGATCATTTTTTTTAAAA--TCA-A-GC-----GAGGAACCCTTC-AAAAAATGTAC----C--TAG-AATA-TCAAA-AA-CAGT--T--T-GCAA-GTTTAACTA--CATG-GGACC---A-A-T--TTTC-------ACTAAAATTTACTT----T-CGGA--TT-T-TGGA-A-T-A-ATG-CC-TAA---GAA-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--TTT---C-A-TGGC-A-TTTT--GCGACCGG------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-TTTTT-ATA-TTA---GTTCTTGG-------T-CA-ATTTTATAC-A-AATTTTTATTA--C--TT--TTTGCGGAAAACAG-------CTTCTTTTG-TGATAAGTAA-CGTC-TCCTCTTTAGGAA-TTTT---GGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTT-CTTA-TAT-AAT--CC-TTT-GTT-C-GGCC-CATTGGGCGATC-GGGAAT-CCAAA-----C-A-TGGCGGATTAgttgaaattagcaaaattgtaatatttctggcaatg
gi|7 : AC----A-T-------GTC-----GGT--TGA--------A-AA---T-------G-A-TCAT----TTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAA-TGTAC----C--TAG-AATA-TCAAA-AAACAGT--T--TTGCAACGTT-AACT---CATG-GGA-C---A-A-TT---TC-------ACTAAAA-TTACTT----C--GGA-TTT-TATGGA-A-T-A-ATG-CC-T-A---GAA-GA--TTTGTTAC-GT-TT-GTTTG-AA-GTTTG----G-C-A--CTT---C-A-TTGC-ATTTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAATG------GGCG-A--TCC-G-C-TCGG-ATTTT-TAATTT----GTCTTGG----------CA-ATTTTATATGA-AA-TTTTA--A--C--TT--TTTGCGGAAAAC-------A-GTTCTTTTG-TG---AATAACCGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-GTTAGCAA---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTATTATAAAT--CCTTTT-GTT-C-GG-C-C-TT-GGCGATC-GGGAAT-CC-AA-----C-A-T-GCGGATTAtgcaaattagcaaaaacggtaatatttctggcaat
gi|8 : ----AAA--TCA-AAGCTGGAAGGGAAAGC-TTC-AGAAA---TAAAGCCC--CAG-AATG-TCGAA-AA-C-GT--TAATG-CAATGTTTTATT---TATG-GGA-C---A-A-T---CAC-------ACCAAA--TTACTT----TCAAGA-TTC-T-TCAACA-T-A-ATG-AAGC-A---GACCGA--TTTGTTAT-GT-TTTGTTTGGAA-G-TTT------C-A--CTT---C-A-TACC-A-TTTTT-GCGAT--C------T-TTTT----------------CTA--TGCAA-CGATCGATT-G-GGAAG-AG---GGTG-AACTCC--CT-TCAAAGTTTT-CGA-TTTTTTGTTCTGGGAATCG-CT-CACAATTTATAC-A-TA-TTTTTCTA--T--TT--------GAAAACAG----AA-GTT-TCTCGCTGAC-TGTAA-CGTC-TCCTCCGTAAG-ATTTTT---AGAA--TCAAGGTATTGTAGG-A---AGG-AATTAGATATT-AATA--TT-------TTA-TAT-AA---CC-CTT-GTT-C-GG---CATT-GGCAATG-GTGAAT-CC-AG-----C-A-TGGCGGTtgccaaattagccaaaacggtaatttggcaat
gi|9 : ttaaAATA----------AA-TA--GGTTATAAATA--C---A---GGTTCA--CT-------T-------T---GGTTGCA----AA-AGA---GCAC----A-TGAACTTTATCC----GCT--TGATTAGTGAAA-GA---TTCACCG-A-G-TCTTCATTTTC----AAAACTCA-A-AC-----GAGGAAACATCC-AAAAAA-GTAAGA--C--CAG-AATAGTCAAA-AA-AAGTAAT--CCGCGAC--TTA--T---TATG-GCT-A---A-A-TTA-CTC-------ACTAAA---TACTTAATGT-AGGC-TTTGT-CCAA-A-TAA-ATGAGC-C-A---TCA-GA--TTTG-TAT-GTCTT-G-TTG-AACG-TTGCACAG-C-ATTCCC---C-A-TGGCAA-TAGT--G-GAA--GATCAAAT-TTTT----------------CTAATTGAAC-C-ATC-ATA-GAGAAAGTATCA-GATG-AATTCC-GAT-TCAGCGTTTT-CAGCTT----GTaatgcagcataaacggtaataaatctggcaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): TCAATTGCTCAGGAGGAAATAAATTAATTCATTTTTGTACATATTTATTACTTGAGTGGGGGGGGGGGGG
Unaligned ( gi|36 ): ATTGTATGCATTTTCTCTGCATTTAAAACTTTTGTCTT
Alignments
lowQualScore : 2222 2222 111 1111 11111 111111 66666666666666666 1 1 1111 11111 11 222222222222 111111 44444444444444444444444444444444444444 1111 5555555555555555555555555555555555555555 11111 22 33333333333 11111111 11111111111111111 1111 11
lowQualScore : 4444 0000 1 1 6 666 6 6 3 4444 66666 6 6 6 777777 5 1 77 55555555555555555 1 7 5 5 5 1111 4 4 8 44444 3 1 3 77 7 0 777777777777 3 000000 777777 44 00000000000000000000000000000000000000 0000 3 77777 0000000000000000000000000000000000000000 0 2 6666 33 2 5 77777 6 3 9 11111 44 3 3 3 3 55555 22 99999999 3 888 3 3 77777777777 77 7777777 3 3 3 3 3 3 3 88888888 3 44 77 2 2 2 2 2 2 2 4444 4 22 555 2 2 6 2 555 777777777 2 55555555555555555 22 2 2 2 2 2 2 666 2 3 2 2 6 2 4 6666 3 55 2 2 2 2 2 33 77 33 5 9 2222 2 2 2 2 2 2 4 4444 00 2 666 5 33 2 2 2 22 2 2 2 2 2 2 2 2 4 2 6666666 2 2 0
lowQualScore : .... .... . . . ... . . . .... ..... . . . ...... . . .. ................. . . . . . .... . . . ..... . . . .. . . ............ . ...... ...... .. ...................................... .... . ..... ........................................ . . .... .. . . ..... . . . ..... .. . . . . ..... .. ........ . ... . . ........... .. ....... . . . . . . . ........ . .. .. . . . . . . . .... . .. ... . . . . ... ......... . ................. .. . . . . . . ... . . . . . . . .... . .. . . . . . .. .. .. . . .... . . . . . . . .... .. . ... . .. . . . .. . . . . . . . . . . ....... . . .
lowQualScore : 2222 4444 0 0 7 555 7 7 7 2222 77777 7 7 7 666666 7 0 99 44444444444444444 4 1 0 0 0 3333 4 4 9 44444 6 9 6 00 3 4 222222222222 1 222222 888888 11 33333333333333333333333333333333333333 4444 1 77777 7777777777777777777777777777777777777777 4 8 1111 99 9 7 11111 2 1 9 88888 22 1 1 1 1 55555 33 99999999 1 555 1 1 77777777777 33 7777777 3 3 3 3 3 3 3 11111111 3 33 99 4 4 4 2 2 2 2 7777 2 99 888 1 1 3 1 888 777777777 1 22222222222222222 99 1 1 1 1 1 2 999 2 4 2 2 7 2 4 9999 4 66 4 4 4 4 4 22 99 22 6 6 2222 5 4 4 4 4 4 7 3333 11 2 999 3 22 4 1 2 99 1 2 2 2 2 2 2 2 4 2 3333333 2 5 1
consensus : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAG-CGGCT--AGTA-CT-AATCGGGCCG----AC-----TTCT-GAACTTCATGT-ACC-TTTCA--TC--TTTGT-CCAANGGT--GGCC----------GT-----AAGTAATT-AATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TA--AGTTAGGCATA--T---CTT-GGTTGA--CT-------T-------T---G-----A----AATAGAATGGTAC----A-T-----TGGTCC----GGT--TGA--------A-AA---TT-ACCG-A-A-TCATCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAAATGTAN----C--CAG-AATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAACT----CATG-GGA---CA-A-TTGTCT-------CACTAAA--TTACTT----T-AGGA-TTT-T-TCG-A-AT-A-ATG-NC-C---A-GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCGGTTTA
Reference ( family-1695 ) : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAG-CGGCT--AGTA-CT-AATCAGGCCG----AC-----TTCT-GAACTTCATGT-ACC-TTTCA--TC--TTTGT-CCAANGGT--GGCC----------GT-----AAGTAATT-AATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TA--AGTTAGGCATA--T---CTT-GGTTGA--CT-------T-------T---G-----A----AATAGAATGGTAC----A-T-----TGGTCC----GGT--TGA--------A-AA---TT-ACCG-A-A-TCATCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAAATGTAN----C--CAG-AATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAACT----CATG-GGA---CA-A-TTGTCT-------CACTAAA--TTACTT----T-AGGA-TTT-T-TCG-A-AT-A-ATG-NC-C---A-GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCGGTTTA
gi|1 : --AGGCTTAG-CGGCT--AGTA--------GGGTCT----AC-----TTCT-GAACTACGTGT-ACC-TTTCA--TCC-TTTGT-CCAAAGGT--GGCC----------TT-----A-GTAATT-AATCATCAA-CTT-AATTGGCAAGA----G-TCAGC-AAA-AAT----GATATCCA-CGTAAC-GGTAG-ACA-TGGTCGAATG-----------A-TC--AGT-AGGAATA--A---ATA-AGTTCA--CT-------TCTTGCGTT---G-----A----AATAGAATGGTAA----AAT-----TGGTC------------A--------A-AA---TTCACCG-AGA-TCATCATTTTT----AAA--TCT-A-AC-----GAGAAACC-TTC---AAAATGTAG----C--TAG-AATA-TCATA-AA-CAGT--T--T-GCAACGTTT-ACT----CATGTGGGCCTCATA-TT-TCTTTTAGTATACTTGA--ATATTT----T----A-TTT-T-TCGAA-AT-AGAAG-AA-CAAGA-GAA-AA--ACTGTTAC-A--TT-G-TTA-AA-G-TTGG----GCAA--CTT---CGA-TGAC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGT-A-ATC-ATT-G-AAAAG-AT---GGCG-ATTT-C-GCC-TCGA-GTTTT-GAA-TT----GTTCTGGGAATC--TT-TA-CTTTTATAT-G-AA-TTTTAATA--C--TTAGTTT--GGAAAACAG----AA-GTTATTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCGAATTA-TGCAGC-A---AGGAAATTAGATGTTAAATA--TGATTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CT------------TGGAGGTTTA
gi|10 : tagagctagtatattTCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAA-TGTAC----C--CAG-AATA-TCAAA-AA-CAGT--T--TG-CAACGCT-AACT----CATG-GGA---CA-A-TT---T-------CACTAAA--TTACTT----T-AGGA-TTT-T-TCT-A-AT-A-ATG-CC-T---A-GAA-GA--ATTGCTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---T-A-TGGC-A-TTTT--GCGAC--A------T-TTTG----------------ATA--TGCGC-C-TTC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-AT----TTCTTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTTTATTA--C--TT--TTTGCAGAAAACTG----AA-GTTCTTTTG-TGAC-AGTAA-CGTC-TTCTCTTTAGG-ATTTTT---GGAAATTCACAGTA--GTAAC-A---AGTAAATTAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGC-ATC--GGAAT-CC-AA-----C-A-TGtgcaaattagcaaaacggtaatattgctgacaa
gi|11 : --AGACCTAG-CGGCT--A----CT-AGTAGGGCCT----AC-----TTCT-GAACTTCATGT-ACC-TTTCAT-TC--TTTGT-CCATAGGT--GGCC-----------T-----AATTAATT-AATAATAAA-CTT-AATTGGCAAGAGTCAG-TAA---AAA-AAAT--G-ATATCCA-TGTAAC-GGTA-GACC-TGGTCGAAT-----------GA-TA--AG-TAGGAATA--A---ATA-AGTTCA--CCTCTTGGGT-------T---G-----A----AAAAGATTGGTAC----A-T-----TGG------------TGA--------A-AA---TTAACCGAA-A-TCATCATTTTT----AAA--TTG-A-GC-----GAGGAACC-TTC--AATAATGTAG----C--CAG-AATA-TCAAA-AA--AGT--T--T-GCAACGTTT-ACTCCGGCATG-GGA---CA-A-TT---T-------CACTAAA--TTACTT----T-AG
gi|12 : gagctcatggagctagtataatCA-TATACC-GGTAA-ACC-TGACCGAATG-----------A-TA--CGT-AGGCATAAGTAAGTTT-GCTT----CT-------T-------G---G-----ATTTCAATAGAATGGTAC----T-T-----AGGTT------GT--TAATAGT----A-AACATTC-ACCA-A-AGTCATCATTCTT----AAA--TCA-A-GC-----CTGGGACC-TTC-AGAAA-TTTAA----A--CAG-AATA-TCAAA-A--CGGC--A--TG-CAACGCTTA-TT----CATG-AGA---AA-A-TTGT----------ACTAGA--TTACTT----T-AGGA-TTT-T-TCA-A-AT-A-ATG-AA-C---G-GAT-GA--TTTTTTAT-GT-TT-GTTTG-AA-G-TT-G----AC-A--CTC---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGAAC-C-ATC-TTT-G-
gi|13 : gttgtggagtttgcaaactttcacaatatttcaaaAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-AGTGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-TT----ATTCT-GGAACC--TT-CA-A-TTTATAT-A-AA-TTTCATTA--C--TT--TTTGTGGAAAACAG----AA-GTT-TTTTG-TGAT-AATAA-CGTCTTCCTCTTTA-G-A-TTTT----GAAATTCACAGTA--GTAAC-A---AGGAAATTAGATGTTAAATA---T-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GACGATC-GGGAAT-CC-AA-----C-A-TGGTGGATTA
gi|14 : TTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-A-TTCC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGG-ACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--CTTTT--TTTCCGG-AAACAGA---AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A--TTT---GGAAATT-AAAGTA-TGCAGC-AGC-AGGAGATTAGACATTAAATATTTT-TTTTCCTTA-TAtgcaaattagcaaaacggtcatatttctggcaat
gi|15 : T----CATG-GGA---CA-AATTGTC---------ACTAA----------------------T-T-TCG-A--T-A-ATA-AC-----A-GAA-GA--TTT---AC-G-----GTT-G-AA-G-T--------C-A--C-----C-A---GC-A-T-----GCGAC--G------T-TTT-------------------A--TGCGC-C-ATC-ATT-G-AAAAG-AT---GGTGGAG--CC-GCCGTCAA-GTTTTTCAA-T-----GTACT---AACC--TTTCA-ATTTTTTAT-A-AA-TT--ATTA--C--TT------CGGAAA-CAG----AA-GT-CTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTGGG-A-TTTTTTTGGAAATTCAAAGTA-TGCAGC-A---GGGAAATTAGATGata
gi|16 : GTTAC-GT-TT-GTTTG-AA-G-TT-G----CG-A--CTT---C-A-TGG--A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATT-CC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT----GAAATTAAAAGTA-TGCAGC-GAGCAGGAGATTAGACATTAAATA--TT-TTTT
gi|17 : GTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATTTCC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTAAAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTTttc
gi|18 : --TC--TTCGT-CCAAACGT--GGCTT---------AT-----ACGTCATT-GATAAT-AAACAT-AATTGGCAAGA---GG-CA-GT-GAA-AATT--GT-TATCAA-CGTAAC-GGTAG-ACC-TGGTCGAATG----------TAGTAGCAG--AGACATA--T---ttc
gi|18 : tATG----------AA-CA--AGTT---CACT--T---CTC-GG--G------------T-------T---G-----A----AATAGAATGGTTCATTAA-T-----TGGTCC----ataacatttatgtctctggtagtaggcatgaacaagttcacttctcgggttgaaatagaatggttcattaattggtccttttaaaggcttaaaatagtgaaaattcacagacgtcatca
gi|19 : ttcttcgtccaaacgtggcttatacgtcattgataataaacataattggcaagaggcagtgaaaattgttatcaacgtaacggtagacctggtcgaatgtagtagcagagacatatataacatttatgtctctggtagtaggcTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--T-CGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATT-CC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTT-TAT-ATAA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGA--AGT---CGTC-T-CTCTTTAGG-A-TTTT---GGAAATT-AAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTTttttaaaggcttaaaatagtgaaaattcacagacgtcatca
gi|2 : TAGTATG---TAGTTGCCAAGGCGTGG-CAGGT---GTAACT-AATCAGAC-G----AC-----TTCTAGAACTTCATGT-GCC-TTTCA--TA--TTTGT-CCAATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATG----------GA-TG--AGTTAGGCATA--T---CTT-GGTTGAAACT-------T-------T---G-----A----AATAAAATGGTAC----A-T-----TGGTCCC---GGC--TGA--------AGAA---T-----G-A-A-T-AT--TTTTT----AAA--TCA-A-GC-----GAG-AGCC-TTCCAAAAAATGT-C----C--CAGGAATA-TCAAA-AA-CAGT--T--TG-CAACGTTTAACT----CATG-GGA---CA-G-TTGTCC-------CACTAAA--TTACTT----T-AGGATTTT-T-TCG-A-AT-A-ATG-CC-T---ATGAC-GAT-TTTGTTACTTT-TT-GTTTG-AA-G--T-G----GCGA--CTTC--C-A-AGGC-A-TTTTTGGCGAC--G------T-TTTT----------------ATA--TGCGCAA-ATC-ATTGG-GAAAT-GT---GGCG-ATTTCCGGCC-TCGGAATTTT-TAT-TG----GTTCTGGGGAAC--TT-CA-ATTTTATAC-A-AG-TTTTATTA--CT-TT--TTTGCGGTAAACAGAATTAA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTAGG-A-ATTT---GG-AATTCAAAGTA--GTAGC-A---A-GAAATCAGATG-TAAATA--TT-TTTTTCTTA-TAT-AATTCCT-TTT-GTT-CGGG-C-CATT-GGCGATCGGGGAATGCC-AA-----C-A-TGGCAGATTt
gi|20 : CAGTAGTATGGTTTAGCC-----GGCCTAG-TGGCT--AGTA-CTGAACTAGGCCGACTAAC-----TTCT-GAACTTCATGTCACC-TTTCAATTC--TTTGTCCCAATGGTTGGGCCCCCCGG----GTGGCCCAAGTAATTAAATATA-AA-CTTAAATTGGCAAAG---AG-TAAATGGAA-AATT--G-ATATCCA-T----CGGGTATGACC-TGGTCGAAT-----------GA-TA--G--TAGGTATA--T---CTT-GGTTGA--AT-------T-------T---
gi|21 : agagctCAGTAGTATGGTT-AGCCG-----GCCTAG-TGGCTTTAGTA-CT-GACTAGGCCG----ACCTACATTCT-GAACTTCATGT-ACCCTTTCA--TTCTTTTGT-CCAATGGT--GGCCCCCCAGGGGGGCCC---AAGTAATT-AATAATAAA-CTT-AATTGGCAAG----AG-TAAAT-GAA-AATT--G-ATATCCA-TG-----GGTTAGACC-TGGTCGAAT-----------GA-TA--G--TAGGTATA--T---CTTGGGTTGA--AT-------T-------ttaa
gi|22 : gagctTATAC-A-AA-TTCTATTAAAT--TT--TTTTCGGAA------------GTTCTTTTG-TGAT-AGTAA-CATC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTG-TGCAGC-A---AGGAAATTAGATGTTAAATT--TG-TTTTCCTTA-TAT-AAT--CC-TAT-GTT-C-GG-C-CATT-GGCGATC-GGG-AT-CC-AA-----T-A-TGGCGGTTTA
gi|23 : AAGA----G-TCAGT-GAA-AATT--GA-TATCCA-CGTAAC-GGCA-GACC-TGG-CGAATGAAAAAGAATAAA-TA--AGTT---CATT--T---CTT-GG--GG-----------T-------A---G-----A----AATAGAA--GTAC----A-T-----T---------GGT--TGA--------A-AA---TTAACAG-A-A-ACATTTTTTTT----AAA--TCG-ACGT-----GA-GAACC-TT--AAAAAATGTAG----CATTAG-AATG-TCAAA-AA-CAGT--T--T-GCAACGtgcacattagcaaaacagtaatatttctggcga
gi|24 : C-A--CTT---C-A-TGGC-A-TTTT--GCGAT--T------T-TTTTTTTTTTTTAAACTAAAAT---TGCGC-C-ATT-ATT-G-GAAAG-ATAGTGGTG-ATTTCC-GCT-TCAG-GCTTT-CAA-TT----GTTCTGGG-GCTGGTT-CA-CTTTTATAC-A-TA-TTTTATTA--C--TT--T
gi|25 : TTG-AA-G-TT-G----AC-A--CTTAATC-A-GGGC-A-TTTC--GCGGA--T------TGTTTT----------------ATA--CAAAC-T-GTC-ATT-G-GAAAC-AT---GGAT-ATTTGT-GCT-TTGT-ATCTT-CTA-TT----GTTCTGGGAACC--TT-CA-CTTgggggggggggggttaaacgttcttt
gi|26 : C-A---AGATAATTAGTAGC-AAGCA--TT-TTTTCCTCA-TA---GC--CC-TTT-GTTTC-GG-AACATT-GGCGATC-GGT-AT-CC-AA-----T-A-TGA-AGTTTA
gi|27 : CTAA-CAT-AAG--TC-TAT-GTT-T-GG-C-CATT-GGCGACC-AGGAAC-TC-AT-----CTATTTGCGGTTTtggcaattacaaaccggtaataatctggc
gi|28 : gttaaactaatatgCTTTCG-TGAC-TGTAA-CGTC-TCCTCTTTAGG-A-TTTT---TTAAATTCAAGGAA-TTAAAC-A---TGGAAATTAGA-ACTAAATA--TT-TTTTCTTTA-TAT-AAT--CC-Ttgcaaattaatcaattatacagtaaaatttctg
gi|29 : -T-----TGGTCC----TTTAGTAA--------A-AA---TTCACAG-ATA-TCGTCATTTT-----GAA--TCA-A-GC-----GAGGAAC
gi|3 : aagttcaactaatatgggttaacagaactgagcgtCAATAGTATG---TAGTTGC--AG-CGTGGACAGGT---GTA-CT-AATCAAGACG----AC-----TTCT-GAACTTCATGT-GCC-TTTCA--TA--TTTGT-CCAATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATG----------GA-TG--AGTTAGGCATA--T---CTT-GGTTGAAACT-------T-------T---G-----A----AATAAAATGGTAC----A-T-----TGGTCCC---GGC--TGA--------AGAA---T-----G-A-A-T-AT--TTTTT----AAA--TCACA-GC-----GACGGCCT-TCC-AAAAAATGTCG----C--CGG-AATA-TCAAAGAA-CAGT--T--TGGCAACGTTTAAGC----TATG-GGA---CA-G-TTGTCC-------CACTAAA--TTACTT----T-AGGA-TTT-T-TCG-A-AT-A-ATG-CC-T---A-GAC-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--TTT---C-A-TTGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGTAAACAGATT-AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A--TTT---GGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCAGATTA
gi|30 : gtttcaaTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC-GGGAGT-CC-AA-----T-A-TGGCGGTTTAa
gi|31 : TA-TAT-AAT--CC-TTTCGTT-C-GG-C-CATT--GCAATC-GGGAGT-CC-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtaatatttctggcaat
gi|32 : TA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC--GGAGT--C-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtatatttctggcaatg
gi|33 : A-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT--GCAATC--GGAGT--C-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtaatattttggcaat
gi|34 : AT--CC-TTT-GTT-C-----------GGCGATC-GGGAATGCC-AATATTGC-A-TGGCGtgcaaattagcaaaacggtaatatttctggca
gi|4 : ATATT-AA-TTT-ATGTGACCAGA---AGATAAGC-GGA-ACTTCCAAACTTTAACTATACC-GGTAG-ACC-AGAGCGAATG-----------A-CA--AGT-AGGCATA--T---CTT-GG--G------------T-------T---G-----A----AATAGAATAGTAC----T-T-----TGGTCTTTTAGG----AA--------A-AA---TTCACCG-A-GGTCTTCATTCCT----AGA--TCA-A--T-----GAGGAACC-TTC-AAAAATTA-AA----C--CAG-AATG-TCAAA-AA-TGGT--A--TG-CAACGTTTA-TT----GATG-GGA---CA-A-TT---T-------C--TGAA--T-----------AGGG-TTT-T-CCA-C-AC-A-ATG-AA-C---A-GAC-GA--TTTGTTAT-GT-TT-GTTTG-AA-G-TT-T----TC-A--CTT---C-A-TTGC-A-ATTT--GCTAT--C------T-TTTC----------------CTT--TACAC-T-ATC-ATT-G-GAAAT-AT---GGTG-ATTTGC-GCT-TCAG-ATTTT-CAA-TT----GTTCTGGGAACC--TT-CA-CTTTT-CAC-A-TA-TCCTTTTG--CC-TT--TTTTTGGAAAACAA----AAAGTTTCTTTG-TGAC-TATAA-CATC-TCCTCTTTAGG-A-TTTT---AGAAATTCAAGGTA-TGTAGC-A---TGGAAATTAGATGTTAAATA--TA-TTCTTCTTA-TAT-ATT--TC-TTT-GCC-C-GG-C-CATT-GGTGATA-GGAGAT-CC-AA-----T-A-TGGCGGCTTAttatgccaaattagcaaaacggtaaactggcaag
gi|5 : cctttttttatcgtagctttctttttaggggA-TATACC-GGTAG-ACC-TGACCGAATG-----------A-TA--CGT-AGGCATA--A---GTA-AGTTCG--CT-------T-------CTTGG-----ATTTCAATAGAATGGTACT---A-T-----AGGTCTTATAAGT--TAA--------A-AT---TC-ACCC-A-AGTCATCATTTTT----AAA--TCA-A-GC------------C-TTC-GAAA--TTTAA----A--CAG-AATA-TCAAA-A--CGGC--A--TG-CAACGCTTA-TT----TATG-AGA---TA-A-TTGT----------ACTAGA--TTACTT----T-AGGA-TTG-T-TCA-A-AT-A-ATG-AA-C---G-GAT-GATTTTTTTTAT-GT-TT-GTTTG-AA-G-TT-G----AC-A--CTT---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGAAC-C-ATC-TTT-G-AAAAG-CT---GGTG-A-----------------CTT-CAA-TT---------------------CA-TTTTTATAC-A-TA-TGTTATTG--C-------TTGAGG-GAACTT----AA-GTTCTTTTG-CGAC-TGTAA-CATC-TCCTGATTAGG-A-TATT---AGAAATTCAAGGCA-CTTAGC-----TTCAAATAAGAAGTTTAATA--TT-TTTTCCTTA-TAC-AAA--TT-TTC-CTT-T-GA-C-CATT-CACGATG-GGGAAT-TT-AA-----T-A-TGGTGGTTTtgtaaattagcaagacggtaatatttctggcaatg
gi|6 : taatctatataaacagaaatgtagtggagtttgcaaactttcacaatatttcaagtAC----A-T-----TGGTCC----GGT--TGA--------A-AA-------------A-TGATCATTTTTTTTAAAA--TCA-A-GC-----GAGGAACCCTTC-AAAAAATGTAC----C--TAG-AATA-TCAAA-AA-CAGT--T--T-GCAA-GTTTAACTA---CATG-GGAC--CA-A-T--TTT-------CACTAAAATTTACTT----T-CGGA--TT-T-TGG-A-AT-A-ATG-CC-TA--A-GAA-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--TTT---C-A-TGGC-A-TTTT--GCGACCGG------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-TTTTT-ATA-TTA---GTTCTTGG-------T-CA-ATTTTATAC-A-AATTTTTATTA--C--TT--TTTGCGGAAAACAG-------CTTCTTTTG-TGATAAGTAA-CGTC-TCCTCTTTAGGAA-TTTT---GGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTT-CTTA-TAT-AAT--CC-TTT-GTT-C-GGCC-CATTGGGCGATC-GGGAAT-CCAAA-----C-A-TGGCGGATTAgttgaaattagcaaaattgtaatatttctggcaatg
gi|7 : AC----A-T-------GTC-----GGT--TGA--------A-AA---T-------G-A-TCAT----TTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAA-TGTAC----C--TAG-AATA-TCAAA-AAACAGT--T--TTGCAACGTT-AACT----CATG-GGA---CA-A-TT---T-------CACTAAAA-TTACTT----C--GGA-TTT-TATGG-A-AT-A-ATG-CC-T---A-GAA-GA--TTTGTTAC-GT-TT-GTTTG-AA-GTTT-G----GC-A--CTT---C-A-TTGC-ATTTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAATG------GGCG-A--TCC-G-C-TCGG-ATTTT-TAATTT----GTCTTGG----------CA-ATTTTATATGA-AA-TTTTA--A--C--TT--TTTGCGGAAAAC-------A-GTTCTTTTG-TG---AATAACCGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-GTTAGCAA---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTATTATAAAT--CCTTTT-GTT-C-GG-C-C-TT-GGCGATC-GGGAAT-CC-AA-----C-A-T-GCGGATTAtgcaaattagcaaaaacggtaatatttctggcaat
gi|8 : ----AAA--TCA-AAGCTGGAAGGGAAAGC-TTC-AGAAA---TAAAGCCC--CAG-AATG-TCGAA-AA-C-GT--TAATG-CAATGTTTTATT----TATG-GGA---CA-A-T---CA-------CACCAAA--TTACTT----TCAAGA-TTC-T-TCA-ACAT-A-ATG-AAGC---A-GACCGA--TTTGTTAT-GT-TTTGTTTGGAA-G-TT-T-----C-A--CTT---C-A-TACC-A-TTTTT-GCGAT--C------T-TTTT----------------CTA--TGCAA-CGATCGATT-G-GGAAG-AG---GGTG-AACTCC--CT-TCAAAGTTTT-CGA-TTTTTTGTTCTGGGAATCG-CT-CACAATTTATAC-A-TA-TTTTTCTA--T--TT--------GAAAACAG----AA-GTT-TCTCGCTGAC-TGTAA-CGTC-TCCTCCGTAAG-ATTTTT---AGAA--TCAAGGTATTGTAGG-A---AGG-AATTAGATATT-AATA--TT-------TTA-TAT-AA---CC-CTT-GTT-C-GG---CATT-GGCAATG-GTGAAT-CC-AG-----C-A-TGGCGGTtgccaaattagccaaaacggtaatttggcaat
gi|9 : ttaaAATA----------AA-TA--GGTTATAAATA--C---A---GGTTCA--CT-------T-------T---GGTTGCA----AA-AGA---GCAC----A-TGAACTTTATCC----GCT--TGATTAGTGAAA-GA---TTCACCG-A-G-TCTTCATTTTC----AAAACTCA-A-AC-----GAGGAAACATCC-AAAAAA-GTAAGA--C--CAG-AATAGTCAAA-AA-AAGTAAT--CCGCGAC--TTA--T----TATG-GCT---AA-A-TTA-CT-------CACTAAA---TACTTAATGT-AGGC-TTTGT-CCA-A-ATAA-ATGAGC-C---A-TCA-GA--TTTG-TAT-GTCTT-G-TTG-AACG-TT-GCACAGC-ATTCCC---C-A-TGGCAA-TAGT--G-GAA--GATCAAAT-TTTT----------------CTAATTGAAC-C-ATC-ATA-GAGAAAGTATCA-GATG-AATTCC-GAT-TCAGCGTTTT-CAGCTT----GTaatgcagcataaacggtaataaatctggcaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): TCAATTGCTCAGGAGGAAATAAATTAATTCATTTTTGTACATATTTATTACTTGAGTGGGGGGGGGGGGG
Unaligned ( gi|36 ): ATTGTATGCATTTTCTCTGCATTTAAAACTTTTGTCTT
Alignments
lowQualScore : 2222 222 111 2222222222 1111111 66666666666666666 1 1 1 1111 11111 11 222222222222 111111 4444444444444444444444444444444 1111 5555555555555555555555555555555555555555 11111 22 33333333333 11111111 11111111111111111 1111 11
lowQualScore : 4444 444 1 1 6 666 6 6 44 1111111111 6 6 6 7777777 5 1 77 55555555555555555 1 5 0 5 1111 4 4 8 44444 3 1 3 77 7 0 777777777777 3 000000 777777 44 0000000000000000000000000000000 3 0000 77777 0000000000000000000000000000000000000000 0 2 6666 33 2 5 77777 6 3 9 11111 44 3 3 3 3 55555 22 99999999 3 888 3 3 77777777777 77 7777777 3 3 3 3 3 3 3 88888888 3 44 77 2 2 2 2 2 2 2 4444 4 22 555 2 2 6 2 555 777777777 2 55555555555555555 22 2 2 2 2 2 2 666 2 3 2 2 6 2 4 6666 3 55 2 2 2 2 2 33 77 33 5 9 2222 2 2 2 2 2 2 4 4444 00 2 666 5 33 2 2 2 22 2 2 2 2 2 2 2 2 4 2 6666666 2 2 0
lowQualScore : .... ... . . . ... . . .. .......... . . . ....... . . .. ................. . . . . .... . . . ..... . . . .. . . ............ . ...... ...... .. ............................... . .... ..... ........................................ . . .... .. . . ..... . . . ..... .. . . . . ..... .. ........ . ... . . ........... .. ....... . . . . . . . ........ . .. .. . . . . . . . .... . .. ... . . . . ... ......... . ................. .. . . . . . . ... . . . . . . . .... . .. . . . . . .. .. .. . . .... . . . . . . . .... .. . ... . .. . . . .. . . . . . . . . . . ....... . . .
lowQualScore : 2222 222 0 0 7 555 7 7 33 8888888888 7 7 7 6666666 7 0 99 44444444444444444 4 0 0 0 3333 4 4 9 44444 6 9 6 00 3 4 222222222222 1 222222 888888 11 3333333333333333333333333333333 3 4444 77777 7777777777777777777777777777777777777777 4 8 1111 99 9 7 11111 2 1 9 88888 22 1 1 1 1 55555 33 99999999 1 555 1 1 77777777777 33 7777777 3 3 3 3 3 3 3 11111111 3 33 99 4 4 4 2 2 2 2 7777 2 99 888 1 1 3 1 888 777777777 1 22222222222222222 99 1 1 1 1 1 2 999 2 4 2 2 7 2 4 9999 4 66 4 4 4 4 4 22 99 22 6 6 2222 5 4 4 4 4 4 7 3333 11 2 999 3 22 4 1 2 99 1 2 2 2 2 2 2 2 4 2 3333333 2 5 1
consensus : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAG-CGGCT--AGTA-CT-AATCGGGCCGAC-----T----TCT-GAACTTCATGT-ACC-TTTCA--T-C--TTTGTCC-AANGGT--GGCC----------GT-----AAGTAATT-AATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TA--AGTTAGGCATA--T---CTT-GGTTGA--CT-------TT---G-----A----AATAGAATGGT-AC----AT-----TGGTCC----GGT--TGA--------A-AA---TT-ACCG-A-A-TCATCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAAATGTAN----C--CAG-AATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAACT----CATG-GGA---CA-A-TTGTCT-------CACTAAA--TTACTT----T-AGGA-TTT-T-TCG-A-AT-A-ATG-NC-C---A-GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCGGTTTA
Reference ( family-1695 ) : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAG-CGGCT--AGTA-CT-AATCGGGCCGAC-----T----TCT-GAACTTCATGT-ACC-TTTCA--T-C--TTTGTCC-AANGGT--GGCC----------GT-----AAGTAATT-AATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TA--AGTTAGGCATA--T---CTT-GGTTGA--CT-------TT---G-----A----AATAGAATGGT-AC----AT-----TGGTCC----GGT--TGA--------A-AA---TT-ACCG-A-A-TCATCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAAATGTAN----C--CAG-AATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAACT----CATG-GGA---CA-A-TTGTCT-------CACTAAA--TTACTT----T-AGGA-TTT-T-TCG-A-AT-A-ATG-NC-C---A-GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCGGTTTA
gi|1 : --AGGCTTAG-CGGCT--AGTA--------GGGTCTAC-----T----TCT-GAACTACGTGT-ACC-TTTCA--TCC--TTTGTCC-AAAGGT--GGCC----------TT------AGTAATT-AATCATCAA-CTTAA-TTGGCAAG----AG-TCAGC-AAA-AAT----GATATCCA-CGTAAC-GGTA-GACA-TGGTCGAAT-----------GA-TC--AG-TAGGAATA--A---ATA-AGTTCA--CTTCTTGCGTT---G-----A----AATAGAATGGTAAA----AT-----TGGTC------------A--------A-AA---TTCACCG-AGA-TCATCATTTTT----AAA--TCT-A-AC-----GAGAAACC-TTC---AAAATGTAG----C--TAG-AATA-TCATA-AA-CAGT--T--T-GCAACGTTT-ACT----CATGTGGGCCTCATA-TT-TCTTTTAGTATACTTGA--ATATTT----T----A-TTT-T-TCGAA-AT-AGAAG-AA-CAAGA-GAA-AA--ACTGTTAC-A--TT-G-TTA-AA-G-TTGG----GCAA--CTT---CGA-TGAC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGT-A-ATC-ATT-G-AAAAG-AT---GGCG-ATTT-C-GCC-TCGA-GTTTT-GAA-TT----GTTCTGGGAATC--TT-TA-CTTTTATAT-G-AA-TTTTAATA--C--TTAGTTT--GGAAAACAG----AA-GTTATTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCGAATTA-TGCAGC-A---AGGAAATTAGATGTTAAATA--TGATTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CT------------TGGAGGTTTA
gi|10 : tagagctagtatattTCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAA-TGTAC----C--CAG-AATA-TCAAA-AA-CAGT--T--TG-CAACGCT-AACT----CATG-GGA---CA-A-TT---T-------CACTAAA--TTACTT----T-AGGA-TTT-T-TCT-A-AT-A-ATG-CC-T---A-GAA-GA--ATTGCTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---T-A-TGGC-A-TTTT--GCGAC--A------T-TTTG----------------ATA--TGCGC-C-TTC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-AT----TTCTTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTTTATTA--C--TT--TTTGCAGAAAACTG----AA-GTTCTTTTG-TGAC-AGTAA-CGTC-TTCTCTTTAGG-ATTTTT---GGAAATTCACAGTA--GTAAC-A---AGTAAATTAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGC-ATC--GGAAT-CC-AA-----C-A-TGtgcaaattagcaaaacggtaatattgctgacaa
gi|11 : --AGACCTAG-CGGCT--A----CT-AGTAGGGCCTAC-----T----TCT-GAACTTCATGT-ACC-TTTCAT-T-C--TTTGTCC-ATAGGT--GGCC-----------T-----AATTAATT-AATAATAAA-CTTAA-TTGGCAAGAGTCAG-TAA---AAA-AAAT--G-ATATCCA-TGTAAC-GGTA-GACC-TGGTCGAAT-----------GA-TA--AG-TAGGAATA--A---ATA-AGTTCA--CCTCTTGGGTT---G-----A----AAAAGATTGGT-AC----AT-----TGG------------TGA--------A-AA---TTAACCGAA-A-TCATCATTTTT----AAA--TTG-A-GC-----GAGGAACC-TTC--AATAATGTAG----C--CAG-AATA-TCAAA-AA--AGT--T--T-GCAACGTTT-ACTCCGGCATG-GGA---CA-A-TT---T-------CACTAAA--TTACTT----T-AG
gi|12 : gagctcatggagctagtataatCA-TATACC-GGTAA-ACC-TGACCGAATG-----------A-TA--CGT-AGGCATAAGTAAGTTT-GCTT----CT-------TG---G-----ATTTCAATAGAATGGT-AC----TT-----AGGTT------GT--TAATAGT----A-AACATTC-ACCA-A-AGTCATCATTCTT----AAA--TCA-A-GC-----CTGGGACC-TTC-AGAAA-TTTAA----A--CAG-AATA-TCAAA-A--CGGC--A--TG-CAACGCTTA-TT----CATG-AGA---AA-A-TTGT----------ACTAGA--TTACTT----T-AGGA-TTT-T-TCA-A-AT-A-ATG-AA-C---G-GAT-GA--TTTTTTAT-GT-TT-GTTTG-AA-G-TT-G----AC-A--CTC---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGAAC-C-ATC-TTT-G-
gi|13 : gttgtggagtttgcaaactttcacaatatttcaaaAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-AGTGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-TT----ATTCT-GGAACC--TT-CA-A-TTTATAT-A-AA-TTTCATTA--C--TT--TTTGTGGAAAACAG----AA-GTT-TTTTG-TGAT-AATAA-CGTCTTCCTCTTTA-G-A-TTTT----GAAATTCACAGTA--GTAAC-A---AGGAAATTAGATGTTAAATA---T-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GACGATC-GGGAAT-CC-AA-----C-A-TGGTGGATTA
gi|14 : TTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-A-TTCC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGG-ACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--CTTTT--TTTCCGG-AAACAGA---AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A--TTT---GGAAATT-AAAGTA-TGCAGC-AGC-AGGAGATTAGACATTAAATATTTT-TTTTCCTTA-TAtgcaaattagcaaaacggtcatatttctggcaat
gi|15 : T----CATG-GGA---CA-AATTGTC---------ACTAA----------------------T-T-TCG-A--T-A-ATA-AC-----A-GAA-GA--TTT---AC-G-----GTT-G-AA-G-T--------C-A--C-----C-A---GC-A-T-----GCGAC--G------T-TTT-------------------A--TGCGC-C-ATC-ATT-G-AAAAG-AT---GGTGGAG--CC-GCCGTCAA-GTTTTTCAA-T-----GTACT---AACC--TTTCA-ATTTTTTAT-A-AA-TT--ATTA--C--TT------CGGAAA-CAG----AA-GT-CTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTGGG-A-TTTTTTTGGAAATTCAAAGTA-TGCAGC-A---GGGAAATTAGATGata
gi|16 : GTTAC-GT-TT-GTTTG-AA-G-TT-G----CG-A--CTT---C-A-TGG--A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATT-CC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT----GAAATTAAAAGTA-TGCAGC-GAGCAGGAGATTAGACATTAAATA--TT-TTTT
gi|17 : GTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATTTCC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTAAAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTTttc
gi|18 : --T-C--TTCGTCC-AAACGT--GGCTT---------AT-----ACGTCATT-GATAAT-AAACATAA-TTGGCAAGA---GG-CA-GT-GAA-AATT--GT-TATCAA-CGTAAC-GGTAG-ACC-TGGTCGAATG----------TAGTAGCAG--AGACATA--T---ttc
gi|18 : tATG----------AA-CA--AGTT---CACT--T---CTC-GG--G------------TT---G-----A----AATAGAATGGT-TCATTAAT-----TGGTCC----ataacatttatgtctctggtagtaggcatgaacaagttcacttctcgggttgaaatagaatggttcattaattggtccttttaaaggcttaaaatagtgaaaattcacagacgtcatca
gi|19 : ttcttcgtccaaacgtggcttatacgtcattgataataaacataattggcaagaggcagtgaaaattgttatcaacgtaacggtagacctggtcgaatgtagtagcagagacatatataacatttatgtctctggtagtaggcTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--T-CGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATT-CC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTT-TAT-ATAA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGA--AGT---CGTC-T-CTCTTTAGG-A-TTTT---GGAAATT-AAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTTttttaaaggcttaaaatagtgaaaattcacagacgtcatca
gi|2 : TAGTATG---TAGTTGCCAAGGCGTGG-CAGGT---GTAACT-AATCAGAC-GAC-----T----TCTAGAACTTCATGT-GCC-TTTCA--T-A--TTTGTCC-AATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATG----------GA-TG--AGTTAGGCATA--T---CTT-GGTTGAAACT-------TT---G-----A----AATAAAATGGT-AC----AT-----TGGTCCC---GGC--TGA--------AGAA---T-----G-A-A-T-AT--TTTTT----AAA--TCA-A-GC-----GAG-AGCC-TTCCAAAAAATGT-C----C--CAGGAATA-TCAAA-AA-CAGT--T--TG-CAACGTTTAACT----CATG-GGA---CA-G-TTGTCC-------CACTAAA--TTACTT----T-AGGATTTT-T-TCG-A-AT-A-ATG-CC-T---ATGAC-GAT-TTTGTTACTTT-TT-GTTTG-AA-G--T-G----GCGA--CTTC--C-A-AGGC-A-TTTTTGGCGAC--G------T-TTTT----------------ATA--TGCGCAA-ATC-ATTGG-GAAAT-GT---GGCG-ATTTCCGGCC-TCGGAATTTT-TAT-TG----GTTCTGGGGAAC--TT-CA-ATTTTATAC-A-AG-TTTTATTA--CT-TT--TTTGCGGTAAACAGAATTAA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTAGG-A-ATTT---GG-AATTCAAAGTA--GTAGC-A---A-GAAATCAGATG-TAAATA--TT-TTTTTCTTA-TAT-AATTCCT-TTT-GTT-CGGG-C-CATT-GGCGATCGGGGAATGCC-AA-----C-A-TGGCAGATTt
gi|20 : CAGTAGTATGGTTTAGCCG-----GCCTAG-TGGCT--AGTA-CTGAACTAGGCCGAC-----TAACTTCT-GAACTTCATGTCACC-TTTCAATT-C--TTTGTCCCAATGGTTGGGCCCCCCGG----GTGGCCCAAGTAATT-AAATAT-AAACTTAAATTGGCAAAG---AG-TAAATGGAA-AATT--G-ATATCCA-T----CGGGTATGACC-TGGTCGAAT-----------GA-TA--G--TAGGTATA--T---CTT-GGTTGA--AT-------TT---
gi|21 : agagctCAGTAGTATGGTT-AGCCG-----GCCTAG-TGGCTTTAGTA-CT-GACTAGGCCGACCTACAT----TCT-GAACTTCATGT-ACCCTTTCA--T-TCTTTTGTCC-AATGGT--GGCCCCCCAGGGGGGCCC---AAGTAATT-AATAATAAA-CTTAA-TTGGCAAG----AG-TAAAT-GAA-AATT--G-ATATCCA-TG-----GGTTAGACC-TGGTCGAAT-----------GA-TA--G--TAGGTATA--T---CTTGGGTTGA--AT-------Tttaa
gi|22 : gagctTATAC-A-AA-TTCTATTAAAT--TT--TTTTCGGAA------------GTTCTTTTG-TGAT-AGTAA-CATC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTG-TGCAGC-A---AGGAAATTAGATGTTAAATT--TG-TTTTCCTTA-TAT-AAT--CC-TAT-GTT-C-GG-C-CATT-GGCGATC-GGG-AT-CC-AA-----T-A-TGGCGGTTTA
gi|23 : AAGA----G-TCAGT-GAA-AATT--GA-TATCCA-CGTAAC-GGCA-GACC-TGG-CGAATGAAAAAGAATAAA-TA--AGTT---CATT--T---CTT-GG--GG-----------TA---G-----A----AATAGAA--GT-AC----AT-----T---------GGT--TGA--------A-AA---TTAACAG-A-A-ACATTTTTTTT----AAA--TCG-ACGT-----GA-GAACC-TT--AAAAAATGTAG----CATTAG-AATG-TCAAA-AA-CAGT--T--T-GCAACGtgcacattagcaaaacagtaatatttctggcga
gi|24 : C-A--CTT---C-A-TGGC-A-TTTT--GCGAT--T------T-TTTTTTTTTTTTAAACTAAAAT---TGCGC-C-ATT-ATT-G-GAAAG-ATAGTGGTG-ATTTCC-GCT-TCAG-GCTTT-CAA-TT----GTTCTGGG-GCTGGTT-CA-CTTTTATAC-A-TA-TTTTATTA--C--TT--T
gi|25 : TTG-AA-G-TT-G----AC-A--CTTAATC-A-GGGC-A-TTTC--GCGGA--T------TGTTTT----------------ATA--CAAAC-T-GTC-ATT-G-GAAAC-AT---GGAT-ATTTGT-GCT-TTGT-ATCTT-CTA-TT----GTTCTGGGAACC--TT-CA-CTTgggggggggggggttaaacgttcttt
gi|26 : C-A---AGATAATTAGTAGC-AAGCA--TT-TTTTCCTCA-TA---GC--CC-TTT-GTTTC-GG-AACATT-GGCGATC-GGT-AT-CC-AA-----T-A-TGA-AGTTTA
gi|27 : CTAA-CAT-AAG--TC-TAT-GTT-T-GG-C-CATT-GGCGACC-AGGAAC-TC-AT-----CTATTTGCGGTTTtggcaattacaaaccggtaataatctggc
gi|28 : gttaaactaatatgCTTTCG-TGAC-TGTAA-CGTC-TCCTCTTTAGG-A-TTTT---TTAAATTCAAGGAA-TTAAAC-A---TGGAAATTAGA-ACTAAATA--TT-TTTTCTTTA-TAT-AAT--CC-Ttgcaaattaatcaattatacagtaaaatttctg
gi|29 : T-----TGGTCC----TTTAGTAA--------A-AA---TTCACAG-ATA-TCGTCATTTT-----GAA--TCA-A-GC-----GAGGAAC
gi|3 : aagttcaactaatatgggttaacagaactgagcgtCAATAGTATG---TAGTTGC--AG-CGTGGACAGGT---GTA-CT-AATCAAGACGAC-----T----TCT-GAACTTCATGT-GCC-TTTCA--T-A--TTTGTCC-AATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATG----------GA-TG--AGTTAGGCATA--T---CTT-GGTTGAAACT-------TT---G-----A----AATAAAATGGT-AC----AT-----TGGTCCC---GGC--TGA--------AGAA---T-----G-A-A-T-AT--TTTTT----AAA--TCACA-GC-----GACGGCCT-TCC-AAAAAATGTCG----C--CGG-AATA-TCAAAGAA-CAGT--T--TGGCAACGTTTAAGC----TATG-GGA---CA-G-TTGTCC-------CACTAAA--TTACTT----T-AGGA-TTT-T-TCG-A-AT-A-ATG-CC-T---A-GAC-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--TTT---C-A-TTGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGTAAACAGATT-AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A--TTT---GGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCAGATTA
gi|30 : gtttcaaTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC-GGGAGT-CC-AA-----T-A-TGGCGGTTTAa
gi|31 : TA-TAT-AAT--CC-TTTCGTT-C-GG-C-CATT--GCAATC-GGGAGT-CC-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtaatatttctggcaat
gi|32 : TA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC--GGAGT--C-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtatatttctggcaatg
gi|33 : A-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT--GCAATC--GGAGT--C-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtaatattttggcaat
gi|34 : AT--CC-TTT-GTT-C-----------GGCGATC-GGGAATGCC-AATATTGC-A-TGGCGtgcaaattagcaaaacggtaatatttctggca
gi|4 : ATATT-AA-TTTAT-GTGACCAGA---AGATAAGC-GGA-ACTTCCAAACTTTAACTATACC-GGTAG-ACC-AGAGCGAATG-----------A-CA--AGT-AGGCATA--T---CTT-GG--G------------TT---G-----A----AATAGAATAGT-AC----TT-----TGGTCTTTTAGG----AA--------A-AA---TTCACCG-A-GGTCTTCATTCCT----AGA--TCA-A--T-----GAGGAACC-TTC-AAAAATTA-AA----C--CAG-AATG-TCAAA-AA-TGGT--A--TG-CAACGTTTA-TT----GATG-GGA---CA-A-TT---T-------C--TGAA--T-----------AGGG-TTT-T-CCA-C-AC-A-ATG-AA-C---A-GAC-GA--TTTGTTAT-GT-TT-GTTTG-AA-G-TT-T----TC-A--CTT---C-A-TTGC-A-ATTT--GCTAT--C------T-TTTC----------------CTT--TACAC-T-ATC-ATT-G-GAAAT-AT---GGTG-ATTTGC-GCT-TCAG-ATTTT-CAA-TT----GTTCTGGGAACC--TT-CA-CTTTT-CAC-A-TA-TCCTTTTG--CC-TT--TTTTTGGAAAACAA----AAAGTTTCTTTG-TGAC-TATAA-CATC-TCCTCTTTAGG-A-TTTT---AGAAATTCAAGGTA-TGTAGC-A---TGGAAATTAGATGTTAAATA--TA-TTCTTCTTA-TAT-ATT--TC-TTT-GCC-C-GG-C-CATT-GGTGATA-GGAGAT-CC-AA-----T-A-TGGCGGCTTAttatgccaaattagcaaaacggtaaactggcaag
gi|5 : cctttttttatcgtagctttctttttaggggA-TATACC-GGTAG-ACC-TGACCGAATG-----------A-TA--CGT-AGGCATA--A---GTA-AGTTCG--CT-------TCTTGG-----ATTTCAATAGAATGGT-ACT---AT-----AGGTCTTATAAGT--TAA--------A-AT---TC-ACCC-A-AGTCATCATTTTT----AAA--TCA-A-GC------------C-TTC-GAAA--TTTAA----A--CAG-AATA-TCAAA-A--CGGC--A--TG-CAACGCTTA-TT----TATG-AGA---TA-A-TTGT----------ACTAGA--TTACTT----T-AGGA-TTG-T-TCA-A-AT-A-ATG-AA-C---G-GAT-GATTTTTTTTAT-GT-TT-GTTTG-AA-G-TT-G----AC-A--CTT---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGAAC-C-ATC-TTT-G-AAAAG-CT---GGTG-A-----------------CTT-CAA-TT---------------------CA-TTTTTATAC-A-TA-TGTTATTG--C-------TTGAGG-GAACTT----AA-GTTCTTTTG-CGAC-TGTAA-CATC-TCCTGATTAGG-A-TATT---AGAAATTCAAGGCA-CTTAGC-----TTCAAATAAGAAGTTTAATA--TT-TTTTCCTTA-TAC-AAA--TT-TTC-CTT-T-GA-C-CATT-CACGATG-GGGAAT-TT-AA-----T-A-TGGTGGTTTtgtaaattagcaagacggtaatatttctggcaatg
gi|6 : taatctatataaacagaaatgtagtggagtttgcaaactttcacaatatttcaagt-AC----AT-----TGGTCC----GGT--TGA--------A-AA-------------A-TGATCATTTTTTTTAAAA--TCA-A-GC-----GAGGAACCCTTC-AAAAAATGTAC----C--TAG-AATA-TCAAA-AA-CAGT--T--T-GCAA-GTTTAACTA---CATG-GGAC--CA-A-T--TTT-------CACTAAAATTTACTT----T-CGGA--TT-T-TGG-A-AT-A-ATG-CC-TA--A-GAA-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--TTT---C-A-TGGC-A-TTTT--GCGACCGG------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-TTTTT-ATA-TTA---GTTCTTGG-------T-CA-ATTTTATAC-A-AATTTTTATTA--C--TT--TTTGCGGAAAACAG-------CTTCTTTTG-TGATAAGTAA-CGTC-TCCTCTTTAGGAA-TTTT---GGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTT-CTTA-TAT-AAT--CC-TTT-GTT-C-GGCC-CATTGGGCGATC-GGGAAT-CCAAA-----C-A-TGGCGGATTAgttgaaattagcaaaattgtaatatttctggcaatg
gi|7 : -AC----AT-------GTC-----GGT--TGA--------A-AA---T-------G-A-TCAT----TTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAA-TGTAC----C--TAG-AATA-TCAAA-AAACAGT--T--TTGCAACGTT-AACT----CATG-GGA---CA-A-TT---T-------CACTAAAA-TTACTT----C--GGA-TTT-TATGG-A-AT-A-ATG-CC-T---A-GAA-GA--TTTGTTAC-GT-TT-GTTTG-AA-GTTT-G----GC-A--CTT---C-A-TTGC-ATTTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAATG------GGCG-A--TCC-G-C-TCGG-ATTTT-TAATTT----GTCTTGG----------CA-ATTTTATATGA-AA-TTTTA--A--C--TT--TTTGCGGAAAAC-------A-GTTCTTTTG-TG---AATAACCGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-GTTAGCAA---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTATTATAAAT--CCTTTT-GTT-C-GG-C-C-TT-GGCGATC-GGGAAT-CC-AA-----C-A-T-GCGGATTAtgcaaattagcaaaaacggtaatatttctggcaat
gi|8 : ----AAA--TCA-AAGCTGGAAGGGAAAGC-TTC-AGAAA---TAAAGCCC--CAG-AATG-TCGAA-AA-C-GT--TAATG-CAATGTTTTATT----TATG-GGA---CA-A-T---CA-------CACCAAA--TTACTT----TCAAGA-TTC-T-TCA-ACAT-A-ATG-AAGC---A-GACCGA--TTTGTTAT-GT-TTTGTTTGGAA-G-TT-T-----C-A--CTT---C-A-TACC-A-TTTTT-GCGAT--C------T-TTTT----------------CTA--TGCAA-CGATCGATT-G-GGAAG-AG---GGTG-AACTCC--CT-TCAAAGTTTT-CGA-TTTTTTGTTCTGGGAATCG-CT-CACAATTTATAC-A-TA-TTTTTCTA--T--TT--------GAAAACAG----AA-GTT-TCTCGCTGAC-TGTAA-CGTC-TCCTCCGTAAG-ATTTTT---AGAA--TCAAGGTATTGTAGG-A---AGG-AATTAGATATT-AATA--TT-------TTA-TAT-AA---CC-CTT-GTT-C-GG---CATT-GGCAATG-GTGAAT-CC-AG-----C-A-TGGCGGTtgccaaattagccaaaacggtaatttggcaat
gi|9 : ttaaAATA----------AA-TA--GGTTATAAATA--C---A---GGTTCA--CT-------TT---GGTTGCA----AA-AGA---GC-AC----ATGAACTTTATCC----GCT--TGATTAGTGAAA-GA---TTCACCG-A-G-TCTTCATTTTC----AAAACTCA-A-AC-----GAGGAAACATCC-AAAAAA-GTAAGA--C--CAG-AATAGTCAAA-AA-AAGTAAT--CCGCGAC--TTA--T----TATG-GCT---AA-A-TTA-CT-------CACTAAA---TACTTAATGT-AGGC-TTTGT-CCA-A-ATAA-ATGAGC-C---A-TCA-GA--TTTG-TAT-GTCTT-G-TTG-AACG-TT-GCACAGC-ATTCCC---C-A-TGGCAA-TAGT--G-GAA--GATCAAAT-TTTT----------------CTAATTGAAC-C-ATC-ATA-GAGAAAGTATCA-GATG-AATTCC-GAT-TCAGCGTTTT-CAGCTT----GTaatgcagcataaacggtaataaatctggcaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): TCAATTGCTCAGGAGGAAATAAATTAATTCATTTTTGTACATATTTATTACTTGAGTGGGGGGGGGGGGG
Unaligned ( gi|36 ): ATTGTATGCATTTTCTCTGCATTTAAAACTTTTGTCTT
Alignments
lowQualScore : 2222 222 111 2222222222 1111111 66666666666666666 1 1 1 1111 11111 11 222222222222 111111 4444444444444444444444444444444 1111 5555555555555555555555555555555555555555 11111 22 33333333333 11111111 11111111111111111 1111 11
lowQualScore : 4444 444 1 1 6 666 6 6 44 1111111111 6 6 6 7777777 5 1 77 55555555555555555 1 5 0 5 1111 4 4 8 44444 3 1 3 77 7 0 777777777777 3 000000 777777 44 0000000000000000000000000000000 3 0000 77777 0000000000000000000000000000000000000000 0 2 6666 33 2 5 77777 6 3 9 11111 44 3 3 3 3 55555 22 99999999 3 888 3 3 77777777777 77 7777777 3 3 3 3 3 3 3 88888888 3 44 77 2 2 2 2 2 2 2 4444 4 22 555 2 2 6 2 555 777777777 2 55555555555555555 22 2 2 2 2 2 2 666 2 3 2 2 6 2 4 6666 3 55 2 2 2 2 2 33 77 33 5 9 2222 2 2 2 2 2 2 4 4444 00 2 666 5 33 2 2 2 22 2 2 2 2 2 2 2 2 4 2 6666666 2 2 0
lowQualScore : .... ... . . . ... . . .. .......... . . . ....... . . .. ................. . . . . .... . . . ..... . . . .. . . ............ . ...... ...... .. ............................... . .... ..... ........................................ . . .... .. . . ..... . . . ..... .. . . . . ..... .. ........ . ... . . ........... .. ....... . . . . . . . ........ . .. .. . . . . . . . .... . .. ... . . . . ... ......... . ................. .. . . . . . . ... . . . . . . . .... . .. . . . . . .. .. .. . . .... . . . . . . . .... .. . ... . .. . . . .. . . . . . . . . . . ....... . . .
lowQualScore : 2222 222 0 0 7 555 7 7 33 8888888888 7 7 7 6666666 7 0 99 44444444444444444 4 0 0 0 3333 4 4 9 44444 6 9 6 00 3 4 222222222222 1 222222 888888 11 3333333333333333333333333333333 3 4444 77777 7777777777777777777777777777777777777777 4 8 1111 99 9 7 11111 2 1 9 88888 22 1 1 1 1 55555 33 99999999 1 555 1 1 77777777777 33 7777777 3 3 3 3 3 3 3 11111111 3 33 99 4 4 4 2 2 2 2 7777 2 99 888 1 1 3 1 888 777777777 1 22222222222222222 99 1 1 1 1 1 2 999 2 4 2 2 7 2 4 9999 4 66 4 4 4 4 4 22 99 22 6 6 2222 5 4 4 4 4 4 7 3333 11 2 999 3 22 4 1 2 99 1 2 2 2 2 2 2 2 4 2 3333333 2 5 1
consensus : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAG-CGGCT--AGTA-CT-AATCGGGCCGAC-----T----TCT-GAACTTCATGT-ACC-TTTCA--T-C--TTTGTCC-AANGGT--GGCC----------GT-----AAGTAATT-AATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TA--AGTTAGGCATA--T---CTT-GGTTGA--CT-------TT---G-----A----AATAGAATGGT-AC----AT-----TGGTCC----GGT--TGA--------A-AA---TT-ACCG-A-A-TCATCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAAATGTAN----C--CAG-AATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAACT----CATG-GGA---CA-A-TTGTCT-------CACTAAA--TTACTT----T-AGGA-TTT-T-TCG-A-AT-A-ATG-NC-C---A-GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCGGTTTA
Reference ( family-1695 ) : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAG-CGGCT--AGTA-CT-AATCGGGCCGAC-----T----TCT-GAACTTCATGT-ACC-TTTCA--T-C--TTTGTCC-AANGGT--GGCC----------GT-----AAGTAATT-AATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TA--AGTTAGGCATA--T---CTT-GGTTGA--CT-------TT---G-----A----AATAGAATGGT-AC----AT-----TGGTCC----GGT--TGA--------A-AA---TT-ACCG-A-A-TCATCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAAATGTAN----C--CAG-AATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAACT----CATG-GGA---CA-A-TTGTCT-------CACTAAA--TTACTT----T-AGGA-TTT-T-TCG-A-AT-A-ATG-NC-C---A-GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCGGTTTA
gi|1 : --AGGCTTAG-CGGCT--AGTA--------GGGTCTAC-----T----TCT-GAACTACGTGT-ACC-TTTCA--TCC--TTTGTCC-AAAGGT--GGCC----------TT------AGTAATT-AATCATCAA-CTTAA-TTGGCAAG----AG-TCAGC-AAA-AAT----GATATCCA-CGTAAC-GGTA-GACA-TGGTCGAAT-----------GA-TC--AG-TAGGAATA--A---ATA-AGTTCA--CTTCTTGCGTT---G-----A----AATAGAATGGTAAA----AT-----TGGTC------------A--------A-AA---TTCACCG-AGA-TCATCATTTTT----AAA--TCT-A-AC-----GAGAAACC-TTC---AAAATGTAG----C--TAG-AATA-TCATA-AA-CAGT--T--T-GCAACGTTT-ACT----CATGTGGGCCTCATA-TT-TCTTTTAGTATACTTGA--ATATTT----T----A-TTT-T-TCGAA-AT-AGAAG-AA-CAAGA-GAA-AA--ACTGTTAC-A--TT-G-TTA-AA-G-TTGG----GCAA--CTT---CGA-TGAC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGT-A-ATC-ATT-G-AAAAG-AT---GGCG-ATTT-C-GCC-TCGA-GTTTT-GAA-TT----GTTCTGGGAATC--TT-TA-CTTTTATAT-G-AA-TTTTAATA--C--TTAGTTT--GGAAAACAG----AA-GTTATTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCGAATTA-TGCAGC-A---AGGAAATTAGATGTTAAATA--TGATTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CT------------TGGAGGTTTA
gi|10 : tagagctagtatattTCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAA-TGTAC----C--CAG-AATA-TCAAA-AA-CAGT--T--TG-CAACGCT-AACT----CATG-GGA---CA-A-TT---T-------CACTAAA--TTACTT----T-AGGA-TTT-T-TCT-A-AT-A-ATG-CC-T---A-GAA-GA--ATTGCTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---T-A-TGGC-A-TTTT--GCGAC--A------T-TTTG----------------ATA--TGCGC-C-TTC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-AT----TTCTTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTTTATTA--C--TT--TTTGCAGAAAACTG----AA-GTTCTTTTG-TGAC-AGTAA-CGTC-TTCTCTTTAGG-ATTTTT---GGAAATTCACAGTA--GTAAC-A---AGTAAATTAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGC-ATC--GGAAT-CC-AA-----C-A-TGtgcaaattagcaaaacggtaatattgctgacaa
gi|11 : --AGACCTAG-CGGCT--A----CT-AGTAGGGCCTAC-----T----TCT-GAACTTCATGT-ACC-TTTCAT-T-C--TTTGTCC-ATAGGT--GGCC-----------T-----AATTAATT-AATAATAAA-CTTAA-TTGGCAAGAGTCAG-TAA---AAA-AAAT--G-ATATCCA-TGTAAC-GGTA-GACC-TGGTCGAAT-----------GA-TA--AG-TAGGAATA--A---ATA-AGTTCA--CCTCTTGGGTT---G-----A----AAAAGATTGGT-AC----AT-----TGG------------TGA--------A-AA---TTAACCGAA-A-TCATCATTTTT----AAA--TTG-A-GC-----GAGGAACC-TTC--AATAATGTAG----C--CAG-AATA-TCAAA-AA--AGT--T--T-GCAACGTTT-ACTCCGGCATG-GGA---CA-A-TT---T-------CACTAAA--TTACTT----T-AG
gi|12 : gagctcatggagctagtataatCA-TATACC-GGTAA-ACC-TGACCGAATG-----------A-TA--CGT-AGGCATAAGTAAGTTT-GCTT----CT-------TG---G-----ATTTCAATAGAATGGT-AC----TT-----AGGTT------GT--TAATAGT----A-AACATTC-ACCA-A-AGTCATCATTCTT----AAA--TCA-A-GC-----CTGGGACC-TTC-AGAAA-TTTAA----A--CAG-AATA-TCAAA-A--CGGC--A--TG-CAACGCTTA-TT----CATG-AGA---AA-A-TTGT----------ACTAGA--TTACTT----T-AGGA-TTT-T-TCA-A-AT-A-ATG-AA-C---G-GAT-GA--TTTTTTAT-GT-TT-GTTTG-AA-G-TT-G----AC-A--CTC---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGAAC-C-ATC-TTT-G-
gi|13 : gttgtggagtttgcaaactttcacaatatttcaaaAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-AGTGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-TT----ATTCT-GGAACC--TT-CA-A-TTTATAT-A-AA-TTTCATTA--C--TT--TTTGTGGAAAACAG----AA-GTT-TTTTG-TGAT-AATAA-CGTCTTCCTCTTTA-G-A-TTTT----GAAATTCACAGTA--GTAAC-A---AGGAAATTAGATGTTAAATA---T-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GACGATC-GGGAAT-CC-AA-----C-A-TGGTGGATTA
gi|14 : TTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-A-TTCC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGG-ACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--CTTTT--TTTCCGG-AAACAGA---AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A--TTT---GGAAATT-AAAGTA-TGCAGC-AGC-AGGAGATTAGACATTAAATATTTT-TTTTCCTTA-TAtgcaaattagcaaaacggtcatatttctggcaat
gi|15 : T----CATG-GGA---CA-AATTGTC---------ACTAA----------------------T-T-TCG-A--T-A-ATA-AC-----A-GAA-GA--TTT---AC-G-----GTT-G-AA-G-T--------C-A--C-----C-A---GC-A-T-----GCGAC--G------T-TTT-------------------A--TGCGC-C-ATC-ATT-G-AAAAG-AT---GGTGGAG--CC-GCCGTCAA-GTTTTTCAA-T-----GTACT---AACC--TTTCA-ATTTTTTAT-A-AA-TT--ATTA--C--TT------CGGAAA-CAG----AA-GT-CTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTGGG-A-TTTTTTTGGAAATTCAAAGTA-TGCAGC-A---GGGAAATTAGATGata
gi|16 : GTTAC-GT-TT-GTTTG-AA-G-TT-G----CG-A--CTT---C-A-TGG--A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATT-CC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT----GAAATTAAAAGTA-TGCAGC-GAGCAGGAGATTAGACATTAAATA--TT-TTTT
gi|17 : GTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATTTCC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTAAAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTTttc
gi|18 : --T-C--TTCGTCC-AAACGT--GGCTT---------AT-----ACGTCATT-GATAAT-AAACATAA-TTGGCAAGA---GG-CA-GT-GAA-AATT--GT-TATCAA-CGTAAC-GGTAG-ACC-TGGTCGAATG----------TAGTAGCAG--AGACATA--T---ttc
gi|18 : tATG----------AA-CA--AGTT---CACT--T---CTC-GG--G------------TT---G-----A----AATAGAATGGT-TCATTAAT-----TGGTCC----ataacatttatgtctctggtagtaggcatgaacaagttcacttctcgggttgaaatagaatggttcattaattggtccttttaaaggcttaaaatagtgaaaattcacagacgtcatca
gi|19 : ttcttcgtccaaacgtggcttatacgtcattgataataaacataattggcaagaggcagtgaaaattgttatcaacgtaacggtagacctggtcgaatgtagtagcagagacatatataacatttatgtctctggtagtaggcTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--T-CGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATT-CC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTT-TAT-ATAA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGA--AGT---CGTC-T-CTCTTTAGG-A-TTTT---GGAAATT-AAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTTttttaaaggcttaaaatagtgaaaattcacagacgtcatca
gi|2 : TAGTATG---TAGTTGCCAAGGCGTGG-CAGGT---GTAACT-AATCAGAC-GAC-----T----TCTAGAACTTCATGT-GCC-TTTCA--T-A--TTTGTCC-AATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATG----------GA-TG--AGTTAGGCATA--T---CTT-GGTTGAAACT-------TT---G-----A----AATAAAATGGT-AC----AT-----TGGTCCC---GGC--TGA--------AGAA---T-----G-A-A-T-AT--TTTTT----AAA--TCA-A-GC-----GAG-AGCC-TTCCAAAAAATGT-C----C--CAGGAATA-TCAAA-AA-CAGT--T--TG-CAACGTTTAACT----CATG-GGA---CA-G-TTGTCC-------CACTAAA--TTACTT----T-AGGATTTT-T-TCG-A-AT-A-ATG-CC-T---ATGAC-GAT-TTTGTTACTTT-TT-GTTTG-AA-G--T-G----GCGA--CTTC--C-A-AGGC-A-TTTTTGGCGAC--G------T-TTTT----------------ATA--TGCGCAA-ATC-ATTGG-GAAAT-GT---GGCG-ATTTCCGGCC-TCGGAATTTT-TAT-TG----GTTCTGGGGAAC--TT-CA-ATTTTATAC-A-AG-TTTTATTA--CT-TT--TTTGCGGTAAACAGAATTAA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTAGG-A-ATTT---GG-AATTCAAAGTA--GTAGC-A---A-GAAATCAGATG-TAAATA--TT-TTTTTCTTA-TAT-AATTCCT-TTT-GTT-CGGG-C-CATT-GGCGATCGGGGAATGCC-AA-----C-A-TGGCAGATTt
gi|20 : CAGTAGTATGGTTTAGCCG-----GCCTAG-TGGCT--AGTA-CTGAACTAGGCCGAC-----TAACTTCT-GAACTTCATGTCACC-TTTCAATT-C--TTTGTCCCAATGGTTGGGCCCCCCGG----GTGGCCCAAGTAATT-AAATAT-AAACTTAAATTGGCAAAG---AG-TAAATGGAA-AATT--G-ATATCCA-T----CGGGTATGACC-TGGTCGAAT-----------GA-TA--G--TAGGTATA--T---CTT-GGTTGA--AT-------TT---
gi|21 : agagctCAGTAGTATGGTT-AGCCG-----GCCTAG-TGGCTTTAGTA-CT-GACTAGGCCGACCTACAT----TCT-GAACTTCATGT-ACCCTTTCA--T-TCTTTTGTCC-AATGGT--GGCCCCCCAGGGGGGCCC---AAGTAATT-AATAATAAA-CTTAA-TTGGCAAG----AG-TAAAT-GAA-AATT--G-ATATCCA-TG-----GGTTAGACC-TGGTCGAAT-----------GA-TA--G--TAGGTATA--T---CTTGGGTTGA--AT-------Tttaa
gi|22 : gagctTATAC-A-AA-TTCTATTAAAT--TT--TTTTCGGAA------------GTTCTTTTG-TGAT-AGTAA-CATC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTG-TGCAGC-A---AGGAAATTAGATGTTAAATT--TG-TTTTCCTTA-TAT-AAT--CC-TAT-GTT-C-GG-C-CATT-GGCGATC-GGG-AT-CC-AA-----T-A-TGGCGGTTTA
gi|23 : AAGA----G-TCAGT-GAA-AATT--GA-TATCCA-CGTAAC-GGCA-GACC-TGG-CGAATGAAAAAGAATAAA-TA--AGTT---CATT--T---CTT-GG--GG-----------TA---G-----A----AATAGAA--GT-AC----AT-----T---------GGT--TGA--------A-AA---TTAACAG-A-A-ACATTTTTTTT----AAA--TCG-ACGT-----GA-GAACC-TT--AAAAAATGTAG----CATTAG-AATG-TCAAA-AA-CAGT--T--T-GCAACGtgcacattagcaaaacagtaatatttctggcga
gi|24 : C-A--CTT---C-A-TGGC-A-TTTT--GCGAT--T------T-TTTTTTTTTTTTAAACTAAAAT---TGCGC-C-ATT-ATT-G-GAAAG-ATAGTGGTG-ATTTCC-GCT-TCAG-GCTTT-CAA-TT----GTTCTGGG-GCTGGTT-CA-CTTTTATAC-A-TA-TTTTATTA--C--TT--T
gi|25 : TTG-AA-G-TT-G----AC-A--CTTAATC-A-GGGC-A-TTTC--GCGGA--T------TGTTTT----------------ATA--CAAAC-T-GTC-ATT-G-GAAAC-AT---GGAT-ATTTGT-GCT-TTGT-ATCTT-CTA-TT----GTTCTGGGAACC--TT-CA-CTTgggggggggggggttaaacgttcttt
gi|26 : C-A---AGATAATTAGTAGC-AAGCA--TT-TTTTCCTCA-TA---GC--CC-TTT-GTTTC-GG-AACATT-GGCGATC-GGT-AT-CC-AA-----T-A-TGA-AGTTTA
gi|27 : CTAA-CAT-AAG--TC-TAT-GTT-T-GG-C-CATT-GGCGACC-AGGAAC-TC-AT-----CTATTTGCGGTTTtggcaattacaaaccggtaataatctggc
gi|28 : gttaaactaatatgCTTTCG-TGAC-TGTAA-CGTC-TCCTCTTTAGG-A-TTTT---TTAAATTCAAGGAA-TTAAAC-A---TGGAAATTAGA-ACTAAATA--TT-TTTTCTTTA-TAT-AAT--CC-Ttgcaaattaatcaattatacagtaaaatttctg
gi|29 : T-----TGGTCC----TTTAGTAA--------A-AA---TTCACAG-ATA-TCGTCATTTT-----GAA--TCA-A-GC-----GAGGAAC
gi|3 : aagttcaactaatatgggttaacagaactgagcgtCAATAGTATG---TAGTTGC--AG-CGTGGACAGGT---GTA-CT-AATCAAGACGAC-----T----TCT-GAACTTCATGT-GCC-TTTCA--T-A--TTTGTCC-AATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATG----------GA-TG--AGTTAGGCATA--T---CTT-GGTTGAAACT-------TT---G-----A----AATAAAATGGT-AC----AT-----TGGTCCC---GGC--TGA--------AGAA---T-----G-A-A-T-AT--TTTTT----AAA--TCACA-GC-----GACGGCCT-TCC-AAAAAATGTCG----C--CGG-AATA-TCAAAGAA-CAGT--T--TGGCAACGTTTAAGC----TATG-GGA---CA-G-TTGTCC-------CACTAAA--TTACTT----T-AGGA-TTT-T-TCG-A-AT-A-ATG-CC-T---A-GAC-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--TTT---C-A-TTGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGTAAACAGATT-AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A--TTT---GGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCAGATTA
gi|30 : gtttcaaTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC-GGGAGT-CC-AA-----T-A-TGGCGGTTTAa
gi|31 : TA-TAT-AAT--CC-TTTCGTT-C-GG-C-CATT--GCAATC-GGGAGT-CC-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtaatatttctggcaat
gi|32 : TA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC--GGAGT--C-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtatatttctggcaatg
gi|33 : A-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT--GCAATC--GGAGT--C-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtaatattttggcaat
gi|34 : AT--CC-TTT-GTT-C-----------GGCGATC-GGGAATGCC-AATATTGC-A-TGGCGtgcaaattagcaaaacggtaatatttctggca
gi|4 : ATATT-AA-TTTAT-GTGACCAGA---AGATAAGC-GGA-ACTTCCAAACTTTAACTATACC-GGTAG-ACC-AGAGCGAATG-----------A-CA--AGT-AGGCATA--T---CTT-GG--G------------TT---G-----A----AATAGAATAGT-AC----TT-----TGGTCTTTTAGG----AA--------A-AA---TTCACCG-A-GGTCTTCATTCCT----AGA--TCA-A--T-----GAGGAACC-TTC-AAAAATTA-AA----C--CAG-AATG-TCAAA-AA-TGGT--A--TG-CAACGTTTA-TT----GATG-GGA---CA-A-TT---T-------C--TGAA--T-----------AGGG-TTT-T-CCA-C-AC-A-ATG-AA-C---A-GAC-GA--TTTGTTAT-GT-TT-GTTTG-AA-G-TT-T----TC-A--CTT---C-A-TTGC-A-ATTT--GCTAT--C------T-TTTC----------------CTT--TACAC-T-ATC-ATT-G-GAAAT-AT---GGTG-ATTTGC-GCT-TCAG-ATTTT-CAA-TT----GTTCTGGGAACC--TT-CA-CTTTT-CAC-A-TA-TCCTTTTG--CC-TT--TTTTTGGAAAACAA----AAAGTTTCTTTG-TGAC-TATAA-CATC-TCCTCTTTAGG-A-TTTT---AGAAATTCAAGGTA-TGTAGC-A---TGGAAATTAGATGTTAAATA--TA-TTCTTCTTA-TAT-ATT--TC-TTT-GCC-C-GG-C-CATT-GGTGATA-GGAGAT-CC-AA-----T-A-TGGCGGCTTAttatgccaaattagcaaaacggtaaactggcaag
gi|5 : cctttttttatcgtagctttctttttaggggA-TATACC-GGTAG-ACC-TGACCGAATG-----------A-TA--CGT-AGGCATA--A---GTA-AGTTCG--CT-------TCTTGG-----ATTTCAATAGAATGGT-ACT---AT-----AGGTCTTATAAGT--TAA--------A-AT---TC-ACCC-A-AGTCATCATTTTT----AAA--TCA-A-GC------------C-TTC-GAAA--TTTAA----A--CAG-AATA-TCAAA-A--CGGC--A--TG-CAACGCTTA-TT----TATG-AGA---TA-A-TTGT----------ACTAGA--TTACTT----T-AGGA-TTG-T-TCA-A-AT-A-ATG-AA-C---G-GAT-GATTTTTTTTAT-GT-TT-GTTTG-AA-G-TT-G----AC-A--CTT---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGAAC-C-ATC-TTT-G-AAAAG-CT---GGTG-A-----------------CTT-CAA-TT---------------------CA-TTTTTATAC-A-TA-TGTTATTG--C-------TTGAGG-GAACTT----AA-GTTCTTTTG-CGAC-TGTAA-CATC-TCCTGATTAGG-A-TATT---AGAAATTCAAGGCA-CTTAGC-----TTCAAATAAGAAGTTTAATA--TT-TTTTCCTTA-TAC-AAA--TT-TTC-CTT-T-GA-C-CATT-CACGATG-GGGAAT-TT-AA-----T-A-TGGTGGTTTtgtaaattagcaagacggtaatatttctggcaatg
gi|6 : taatctatataaacagaaatgtagtggagtttgcaaactttcacaatatttcaagt-AC----AT-----TGGTCC----GGT--TGA--------A-AA-------------A-TGATCATTTTTTTTAAAA--TCA-A-GC-----GAGGAACCCTTC-AAAAAATGTAC----C--TAG-AATA-TCAAA-AA-CAGT--T--T-GCAA-GTTTAACTA---CATG-GGAC--CA-A-T--TTT-------CACTAAAATTTACTT----T-CGGA--TT-T-TGG-A-AT-A-ATG-CC-TA--A-GAA-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--TTT---C-A-TGGC-A-TTTT--GCGACCGG------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-TTTTT-ATA-TTA---GTTCTTGG-------T-CA-ATTTTATAC-A-AATTTTTATTA--C--TT--TTTGCGGAAAACAG-------CTTCTTTTG-TGATAAGTAA-CGTC-TCCTCTTTAGGAA-TTTT---GGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTT-CTTA-TAT-AAT--CC-TTT-GTT-C-GGCC-CATTGGGCGATC-GGGAAT-CCAAA-----C-A-TGGCGGATTAgttgaaattagcaaaattgtaatatttctggcaatg
gi|7 : -AC----AT-------GTC-----GGT--TGA--------A-AA---T-------G-A-TCAT----TTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAA-TGTAC----C--TAG-AATA-TCAAA-AAACAGT--T--TTGCAACGTT-AACT----CATG-GGA---CA-A-TT---T-------CACTAAAA-TTACTT----C--GGA-TTT-TATGG-A-AT-A-ATG-CC-T---A-GAA-GA--TTTGTTAC-GT-TT-GTTTG-AA-GTTT-G----GC-A--CTT---C-A-TTGC-ATTTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAATG------GGCG-A--TCC-G-C-TCGG-ATTTT-TAATTT----GTCTTGG----------CA-ATTTTATATGA-AA-TTTTA--A--C--TT--TTTGCGGAAAAC-------A-GTTCTTTTG-TG---AATAACCGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-GTTAGCAA---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTATTATAAAT--CCTTTT-GTT-C-GG-C-C-TT-GGCGATC-GGGAAT-CC-AA-----C-A-T-GCGGATTAtgcaaattagcaaaaacggtaatatttctggcaat
gi|8 : ----AAA--TCA-AAGCTGGAAGGGAAAGC-TTC-AGAAA---TAAAGCCC--CAG-AATG-TCGAA-AA-C-GT--TAATG-CAATGTTTTATT----TATG-GGA---CA-A-T---CA-------CACCAAA--TTACTT----TCAAGA-TTC-T-TCA-ACAT-A-ATG-AAGC---A-GACCGA--TTTGTTAT-GT-TTTGTTTGGAA-G-TT-T-----C-A--CTT---C-A-TACC-A-TTTTT-GCGAT--C------T-TTTT----------------CTA--TGCAA-CGATCGATT-G-GGAAG-AG---GGTG-AACTCC--CT-TCAAAGTTTT-CGA-TTTTTTGTTCTGGGAATCG-CT-CACAATTTATAC-A-TA-TTTTTCTA--T--TT--------GAAAACAG----AA-GTT-TCTCGCTGAC-TGTAA-CGTC-TCCTCCGTAAG-ATTTTT---AGAA--TCAAGGTATTGTAGG-A---AGG-AATTAGATATT-AATA--TT-------TTA-TAT-AA---CC-CTT-GTT-C-GG---CATT-GGCAATG-GTGAAT-CC-AG-----C-A-TGGCGGTtgccaaattagccaaaacggtaatttggcaat
gi|9 : ttaaAATA----------AA-TA--GGTTATAAATA--C---A---GGTTCA--CT-------TT---GGTTGCA----AA-AGA---GC-AC----ATGAACTTTATCC----GCT--TGATTAGTGAAA-GA---TTCACCG-A-G-TCTTCATTTTC----AAAACTCA-A-AC-----GAGGAAACATCC-AAAAAA-GTAAGA--C--CAG-AATAGTCAAA-AA-AAGTAAT--CCGCGAC--TTA--T----TATG-GCT---AA-A-TTA-CT-------CACTAAA---TACTTAATGT-AGGC-TTTGT-CCA-A-ATAA-ATGAGC-C---A-TCA-GA--TTTG-TAT-GTCTT-G-TTG-AACG-TT-GCACAGC-ATTCCC---C-A-TGGCAA-TAGT--G-GAA--GATCAAAT-TTTT----------------CTAATTGAAC-C-ATC-ATA-GAGAAAGTATCA-GATG-AATTCC-GAT-TCAGCGTTTT-CAGCTT----GTaatgcagcataaacggtaataaatctggcaatg
blockSeqs : GTTT C A C A TTA A G AG CTACAT A C C ATTC C A TG CCCCAGGGGGGCCC T A A A AGTC A G T CCAAA C A G GG G GAAAAAGAATAA G GCAG AGTAAG TG TTCACCTCTTGGGTTGA . ATTA GAACT CGCTTGATTAGTGAAAGATTCACCGAG C TTTA AC C C TGGAA C C A AAGCC AT G G G A TAA GG ACTCCGG . C . A GTCC AT AATGTA T G A . C A . CCTA T CC TT T C T G C T . CACA G TT AAT . G G T TTG GATCAAA G TTTTTTTTAAACTAAAA AT A G G G A T AGT G T G G A T T TTTT A GG T C G T T AA TT . G A AATT A C A C T A T TTTG TT A AGC T TT . T A TC T C T G C A G G G A TATTGC T G
blockSeqs : GTT . G G . A . . CA TAACT . . . TTCT . A . CCCCGGGTGGCCC T A A . A . . T GAA . C . TG G GT . AGTT A A TTCGCTTCTTGGATTTC . T . GTTAATAGTAAACATTCACCAAAG C . . . A . A . A AGA . . . . . AAT TG AACTA . . . . GTCC A TCA . . . . . . . AAGC . A T . . . . . . . . . . C . . G . TT CGG . A . . . . . . . CA . T . . A . C A A G . . . . . . T . G A ATT . . . . . . T G T . GC T . . . . . . . . . . . . . G . CT . G
blockSeqs : T . G C . A . . TA T . . . TTC . T . TAT . . . . A . . . GAA . A . AG . GA . AGTT T T TTCACTTTGGTTGCA . . . TTATAAGTTAAAATTCACCCAAG C . . . . . . . A C . . . . . T CG AACT . . . . GTC . TA . . . . . . . AGCC . T . . . . . . . . . . . . . . A . T A . A . . . . . . . . . G . . C . . . A . . . . . . . C . C A A . . . . . . . G T . . C . . . . . . . . . . . . . . . C . G
blockSeqs : G C . . . . TA T . . . TC . T . GT . . . . G . . . GA . A . GG . GG . AGTT T C TTCTTGGATTTC . . . CTTTAGTAAAAATTCACAGATA T . . . . . . . A G . . . . . T G AACT . . . . TTT . TA . . . . . . . CCT . A . . . . . . . . . . . . . . . . T G . A . . . . . . . . . T . . . . . . A . . . . . . . . . T T . . . . . . . . G T . . T . . . . . . . . . . . . . . . C . G
blockSeqs : . G . . . . CA T . . . TA . T . GT . . . . A . . . GT . A . G . GG . AGTT T T TTGAAACTTTGA . . . TTTTAGGAAAAATTCACCGAGG C . . . . . . . T A . . . . . A G AAGC . . . . ACT . TA . . . . . . . AAC . C . . . . . . . . . . . . . . . . T G . A . . . . . . . . . T . . . . . . A . . . . . . . . . T A . . . . . . . . G T . . C . . . . . . . . . . . . . . . C . G
blockSeqs : TA . T . T . . . . A . . . GA . A . A . AA . GGTT T T TTGAAACTTTGA . . . GGTTGAAAATTAACAGAA C . . . . . . . A C . . . . . T G AACT . . . . GT . TA . . . . . . . CCT . C . . . . . . . . . . . . . . . . T G . A . . . . . . . . . T . . . . . . A . . . . . . . . . T T . . . . . . . . G T . . C . . . . . . . . . . . . . . . T . T
blockSeqs : . . . A . . . GA . C . G . G . AGT T T GGTAGA . . . TGAAAATTAACCGAAA C . . . . . . . A G . . . . . T G TATT . . . . GT . TA . . . . . . . CCT . C . . . . . . . . . . . . . . . . T G . A . . . . . . . . . T . . . . . . G . . . . . . . . . G A . . . . . . . . G T . . C . . . . . . . . . . . . . . . T . G
blockSeqs : . . . . GA . C . G . G . CGT T T GTTGA . . . CCGGCTGAAGAATGAA C . . . . . . . . G . . . . . T G ATT . . . . CA . TA . . . . . . . AAC . T . . . . . . . . . . . . . . . . C G . A . . . . . . . . . T . . . . . . A . . . . . . . . . T A . . . . . . . . T T . . T . . . . . . . . . . . . . . . C . G
blockSeqs : . . . G . G . AGT T T GTTGA . . . CCGGCTGAAGAATGAA C . . . . . . . . A . . . . . A G ATT . . . . T . TC . . . . . . . AAC . A . . . . . . . . . . . . . . . . T G . A . . . . . . . . . T . . . . . . A . . . . . . . . . G A . . . . . . . . G T . . T . . . . . . . . . . . . . . . T . G
blockSeqs : . . . G . G . CGT T A . . . GGTTGAAAATGA . . . . . . . . . A . . . . . A G ATT . . . . T . A . . . . . . . CCT . A . . . . . . . . . . . . . . . . T G . A . . . . . . . . . T . . . . . . A . . . . . . . . . T A . . . . . . . . A C . . A . . . . . . . . . . . . . . . T . G
blockSeqs : G . GT A . . . . CGGTTGAAAAA . . . . . . . . . C . . . . . T G AT . . . . T . C . . . . . . . AC . A . . . . . . . . . . . . . . . . T T . C . . . . . . . . . T . . . . . . A . . . . . . . . . G . . . . . . . . . A G . . T . . . . . . . . . . . . . . . T . G
blockSeqs : G . GT C . . . . . . . . . . C . . . . . T G . . . . T . . . . . . . . . . . . . . . . . T T . A . . . . . . . . . T . . . . . . . . . . . . . . . . G . . . . . . . . . G . . . T . . . . . . . . . . . . . . . T . G
blockSeqs : . . . . . . . . . . . . . . . . . . . . T G . A . . . . . . . . . A . . . . . . . . . . . . . . . . G . . . . . . . . . G . . . A . . . . . . . . . . . . . . . T . G
blockSeqs : . . . . . . . . . . . . . . . T C . C . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . T . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . . G . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqCons : CA TTN**** A*** AGT*** TTCATTTGGTTGA****************** GGTTGAAAATTCACCGAA********************** AACT**** *** GT********* TA***** CCC***** ** C******
originalCons : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAG-CGGCT--AGTA-CT-AATCGGGCCGAC-----T----TCT-GAACTTCATGT-ACC-TTTCA--T-C--TTTGTCC-AANGGT--GGCC----------GT-----AAGTAATT-AATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TA--AGTTAGGCATA--T---CTT-GGTTGA--CT-------TT---G-----A----AATAGAATGGT-AC----AT-----TGGTCC----GGT--TGA--------A-AA---TT-ACCG-A-A-TCATCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAAATGTAN----C--CAG-AATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAACT----CATG-GGA---CA-A-TTGTCT-------CACTAAA--TTACTT----T-AGGA-TTT-T-TCG-A-AT-A-ATG-NC-C---A-GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCGGTTTA
finalCons : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAG-CGGCT--AGTA-CT-AATCAGGCCGAC-----T----TCT-GAACTTCATGT-ACC-TTTCATTN----TTTGTCC-AANGGT--GGCC----------GT-----AAGTAATT-AATAAT-AA-CTTAA-TTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATG----------GA-TAAGT---AGGCATA--T---CTT-GGTTCATTTGGTTGA------------------AATAGAATGGT-AC----AT-----TGGTCGGTTGAAAATTCACCGAA----------------------TCATCATTTTT----AAA--TCA-A-GC-----GAGGAACC-TTC-AAAAAATGTAN----C--CAG-AATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAACT----CATG-GGA---CA-A-TTGT---------CACTAAA--TTACTTTA-----GGA-TTT-T-TCG-A-AT-A-ATGCCC-----A-GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TT-G----GC-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AAC------A-TGGCGGTTTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): TCAATTGCTCAGGAGGAAATAAATTAATTCATTTTTGTACATATTTATTACTTGAGTGGGGGGGGGGGGG
Unaligned ( gi|36 ): ATTGTATGCATTTTCTCTGCATTTAAAACTTTTGTCTT
Alignments
lowQualScore : 2222 2222 111 1111 11111 66666666666666666 1 1 1111 11111 1 11 2222222 55555555555555 6666666666666666666666666666666666 111 1 1111111 22 1111111 222222222222222 111111111 11111111111111111 1111 11
lowQualScore : 4444 0000 1 1 6 666 6 6 3 4444 66666 6 6 6 6 88 5 5 1 77 55555555555555555 1 7 5 5 5 1111 4 4 8 44444 3 1 3 7 7 0 55 3 777 6 3 0000000 3 11111111111111 3 7777 7777 44 666 3 3333333333333333333333333333333333 6 55 333 222 1 6666 33 2 5 77777 0 2 3 3 1 1111111 44 3 3 3 3 55555 22 2222222 3 888 3 3 888888888888888 3 44 6666 3 3 3 3 77 3 3 3 666666666 44 77 2 2 2 2 2 2 666666 2 55 555 2 2 6 2 555 777777777 2 55555555555555555 22 2 2 2 2 2 2 666 2 3 2 2 6 2 4 6666 3 55 2 2 2 2 2 33 77 33 2 9 2222 2 2 2 2 2 2 4 4444 00 2 666 5 33 2 2 2 22 2 2 2 2 2 2 2 2 4 2 6666666 2 2 0
lowQualScore : .... .... . . . ... . . . .... ..... . . . . .. . . . .. ................. . . . . . .... . . . ..... . . . . . . .. . ... . . ....... . .............. . .... .... .. ... . .................................. . .. ... ... . .... .. . . ..... . . . . . ....... .. . . . . ..... .. ....... . ... . . ............... . .. .... . . . . .. . . . ......... .. .. . . . . . . ...... . .. ... . . . . ... ......... . ................. .. . . . . . . ... . . . . . . . .... . .. . . . . . .. .. .. . . .... . . . . . . . .... .. . ... . .. . . . .. . . . . . . . . . . ....... . . .
lowQualScore : 2222 4444 0 0 7 555 7 7 7 2222 77777 7 7 7 7 11 7 7 0 99 44444444444444444 4 1 0 0 0 3333 4 4 9 44444 6 9 6 3 3 4 55 3 999 2 1 4444444 8 99999999999999 6 7777 7777 22 555 1 6666666666666666666666666666666666 2 77 555 999 9 1111 99 9 7 11111 7 9 1 1 8 8888888 22 1 1 1 1 55555 33 7777777 1 555 1 1 111111111111111 1 22 5555 1 3 3 3 99 3 3 3 444444444 33 99 4 4 4 2 2 2 444444 1 00 888 1 1 3 1 888 777777777 1 22222222222222222 99 1 1 1 1 1 2 999 2 4 2 2 7 2 4 9999 4 66 4 4 4 4 4 22 99 22 5 6 2222 5 4 4 4 4 4 7 3333 11 2 999 3 22 4 1 2 99 1 2 2 2 2 2 2 2 4 2 3333333 2 5 1
consensus : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAG-CGGCT--AGTA-CT-AATCGGGCCG----AC-----TTCT-GAACTTCATGT-ACC-TTTC-ATTCTTT-GT-CCAANGGT--GGCC----------GT-----AAGTAATT-AATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATGGA-TA--AGT-AGGC-ATA--T---NTNGGTTCA----CTTC----G-G-TTGAAATAGA----ATGG----TA--C-A-TT-GGTC-----GGT---------------------TG---AA-AATTCACCG-A-A-TCATCATTTTT----AAA--TCA-A-GC-----GAGG-AACC-TT-CAAAAAATGTA--N----C--CA-GAATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAACT----CATG-GGAC---A-A-TT-------G-T--C--ACT-AAA--TTACTT----T-AGGA-TTT-T-TCGA--A-T-A-ATG-NC-CA---GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCGGTTTA
Reference ( family-1695 ) : NNNNNNNCAGTAGTATGGTTTAGCCGC--AGGCCTAG-CGGCT--AGTA-CT-AATCAGGCCG----AC-----TTCT-GAACTTCATGT-ACC-TTTC-ATTNTTT-GT-CCAANGGT--GGCC----------GT-----AAGTAATT-AATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAA-AATT--GAATATCCA-TGTAAC-GGTAGGACC-TGGTCGAATGGA-TA--AGT-AGGC-ATA--T---CTTGGTTCA----TTT-----G-G-TTGAAATAGA----ATGG----TA--C-A-TT-GGTC-----GGT---------------------TG---AA-AATTCACCG-A-A-TCATCATTTTT----AAA--TCA-A-GC-----GAGG-AACC-TT-CAAAAAATGTA--N----C--CA-GAATA-TCAAA-AA-CAGT--T--TGGCAACGTTTAACT----CATG-GGAC---A-A-TT-------G-T--C--ACT-AAA--TTACTT----T-AGGA-TTT-T-TCGA--A-T-A-ATG-CC-CA---GAN-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--CTT---C-A-TGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAG-AT---GGCG-ATTTCC-GCC-TCGG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGAAAACAG----AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-TGCAGC-A---AGGAAATTAGACGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCGGTTTA
gi|1 : --AGGCTTAG-CGGCT--AGTA--------GGGTCT----AC-----TTCT-GAACTACGTGT-ACC-TTTC-ATCCTTT-GT-CCAAAGGT--GGCC----------TT-----A-GTAATT-AATCATCAA-CTT-AATTGGCAAGA----G-TCAGC-AAA-AAT----GATATCCA-CGTAAC-GGTAG-ACA-TGGTCGAATG-A-TC--AGT-AGGA-ATA--A---ATAAGTTCA----CTTCTT--GCG-TTGAAATAGA----ATGG----TA--A-AATT-GGTC----------------------------------AA-AATTCACCG-AGA-TCATCATTTTT----AAA--TCT-A-AC-----GAGA-AACC-TT-CAAAA--TGTA--G----C--TA-GAATA-TCATA-AA-CAGT--T--TG-CAACGTTTA-CT----CATGTGGGCCTCATA-TTTCTTTTAG-TA-T--ACT-TGA--ATATTT----T-A----TTT-T-TCGA--AAT-AGAAG-AA-CAAGAGAA-AA--ACTGTTAC-AT-T--GTT-A-AA-G-TTG----GGC-AA-CTT---CGA-TGAC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGT-A-ATC-ATT-G-AAAAG-AT---GGCG-ATTTC--GCC-TCGA-GTTTT-GAA-TT----GTTCTGGGAATC--TT-TA-CTTTTATAT-G-AA-TTTTAATA--C--TTAGTTTG--GAAAACAG----AA-GTTATTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCGAATTA-TGCAGC-A---AGGAAATTAGATGTTAAATA--TGATTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CT------------TGGAGGTTTA
gi|10 : tagagctagtatattTCATTTTT----AAA--TCA-A-GC-----GAGG-AACC-TT-CAAAAA-TGTA--C----C--CA-GAATA-TCAAA-AA-CAGT--T--TG-CAACGCT-AACT----CATG-GGAC---A-A-TT---------T--C--ACT-AAA--TTACTT----T-AGGA-TTT-T-TCTA--A-T-A-ATG-CC-TA---GAA-GA--ATTGCTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--CTT---T-A-TGGC-A-TTTT--GCGAC--A------T-TTTG----------------ATA--TGCGC-C-TTC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-AT----TTCTTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTTTATTA--C--TT--TTTGCAGAAAACTG----AA-GTTCTTTTG-TGAC-AGTAA-CGTC-TTCTCTTTAGG-ATTTTT---GGAAATTCACAGTA--GTAAC-A---AGTAAATTAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGC-ATC--GGAAT-CC-AA-----C-A-TGtgcaaattagcaaaacggtaatattgctgacaa
gi|11 : --AGACCTAG-CGGCT--A----CT-AGTAGGGCCT----AC-----TTCT-GAACTTCATGT-ACC-TTTC-ATTCTTT-GT-CCATAGGT--GGCC-----------T-----AATTAATT-AATAATAAA-CTT-AATTGGCAAGAGTCAG-TAA---AAA-AAAT--G-ATATCCA-TGTAAC-GGTA-GACC-TGGTCGAAT-GA-TA--AGT-AGGA-ATA--A---ATAAGTTCACCTCTTG-----G-G-TTGAAAAAGA----TTGG----TA--C-A-TT-GG-------------------------------TG---AA-AATTAACCGAA-A-TCATCATTTTT----AAA--TTG-A-GC-----GAGG-AACC-TT-C-AATAATGTA--G----C--CA-GAATA-TCAAA-AA--AGT--T--T-GCAACGTTT-ACTCCGGCATG-GGAC---A-A-TT---------T--C--ACT-AAA--TTACTT----T-AG
gi|12 : gagctcatggagctagtataatCA-TATACC-GGTAA-ACC-TGACCGAATG-A-TA--CGT-AGGC-ATAAGTAAGTTTGCTTC------TT-----G-GATTTCAATAGA----ATGG----TA--C-T-TA-GGTT-----GTTAATAG----------------TA---AA-CATTCACCA-A-AGTCATCATTCTT----AAA--TCA-A-GC-----CTGG-GACC-TT-CAGAAA-TTTA--A----A--CA-GAATA-TCAAA-A--CGGC--A--TG-CAACGCTTA-TT----CATG-AGAA---A-A-TT-------G-T-----ACT-AGA--TTACTT----T-AGGA-TTT-T-TCAA--A-T-A-ATG-AA-CG---GAT-GA--TTTTTTAT-GT-TT-GTTTG-AA-G-TTG----A-C-A--CTC---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGAAC-C-ATC-TTT-G-
gi|13 : gttgtggagtttgcaaactttcacaatatttcaaaAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--CTT---C-AGTGGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-TT----ATTCT-GGAACC--TT-CA-A-TTTATAT-A-AA-TTTCATTA--C--TT--TTTGTGGAAAACAG----AA-GTT-TTTTG-TGAT-AATAA-CGTCTTCCTCTTTA-G-A-TTTT----GAAATTCACAGTA--GTAAC-A---AGGAAATTAGATGTTAAATA---T-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GACGATC-GGGAAT-CC-AA-----C-A-TGGTGGATTA
gi|14 : TTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--CTT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-A-TTCC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGG-ACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--CTTTT--TTTCCGG-AAACAGA---AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A--TTT---GGAAATT-AAAGTA-TGCAGC-AGC-AGGAGATTAGACATTAAATATTTT-TTTTCCTTA-TAtgcaaattagcaaaacggtcatatttctggcaat
gi|15 : T----CATG-GGAC---A-AATT-------G-T--C--ACT-AA----------------------T-T-TCGATAA-T-A-A------CA---GAA-GA--TTT---AC-G-----GTT-G-AA-G-T--------C-A--C-----C-A---GC-A-T-----GCGAC--G------T-TTT-------------------A--TGCGC-C-ATC-ATT-G-AAAAG-AT---GGTGGAG--CC-GCCGTCAA-GTTTTTCAA-T-----GTACT---AACC--TTTCA-ATTTTTTAT-A-AA-TT--ATTA--C--TT------CGGAAA-CAG----AA-GT-CTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTGGG-A-TTTTTTTGGAAATTCAAAGTA-TGCAGC-A---GGGAAATTAGATGata
gi|16 : GTTAC-GT-TT-GTTTG-AA-G-TTG----C-G-A--CTT---C-A-TGG--A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATT-CC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT----GAAATTAAAAGTA-TGCAGC-GAGCAGGAGATTAGACATTAAATA--TT-TTTT
gi|17 : GTTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATTTCC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAT-A-AA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A-TTTT---GGAAATTAAAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTTttc
gi|18 : TTCTTC-GT-CCAAACGT--GGCTT---------AT-----ACGTCATT-GATAAT-AAACAT-AATTGGCAAGA---GG-CA-GT-GAA-AATT--GT-TATCAA-CGTAAC-GGTAG-ACC-TGGTCGAATGTAGTAGCAG--AGAC-ATA--T---ttc
gi|18 : --AGT-AGGC-ATG--A---ACAAGTTCA----CTTCTCG-G-G-TTGAAATAGA----ATGG----TT--C-A-TT-AATT-----GGTCCTTTTAAAGGCTTAAAATAGTG---AA-AATTCACAG-ACG-TCATCAataacatttatgtctctggtagtaggcatgaacaagttcacttctcgggttgaaatagaatggttcattaattggtccttttaaaggcttaaaatagtgaaaattcacagacgtcatca
gi|19 : ttcttcgtccaaacgtggcttatacgtcattgataataaacataattggcaagaggcagtgaaaattgttatcaacgtaacggtagacctggtcgaatgtagtagcagagacatatataacatttatgtctctggtTTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A---TT---C-A-TGGC-A-TTT---GCGAC--G------T-TTTT----------------ATA--T-CGC-C-ATT-ATT-G-AAAAG-AT---GGCG-ATT-CC-GCC-TCAG-GTTTT-CAA-TT----GTTCTGGGAACC--TT-CA-ATTTT-TAT-ATAA-TTCTATTA--C--TT--TTTTCGG-AAACAG----AA-GCTCTTTTG-TGA--AGT---CGTC-T-CTCTTTAGG-A-TTTT---GGAAATT-AAAGTA-TGCAGC-A---AGGAGATTAGACATTAAATA--TT-TTTT
gi|2 : TAGTATG---TAGTTGCCAAGGCGTGG-CAGGT---GTAACT-AATCAGAC-G----AC-----TTCTAGAACTTCATGT-GCC-TTTC-AT-ATTT-GT-CCAATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATGGA-TG--AGTTAGGC-ATA--T---CTTGGTTGAAA--CTT----------TGAAATAAA----ATGG----TA--C-A-TT-GGTCCC---GGC---------------------TG---AAGAAT-----G-A-A-T-AT--TTTTT----AAA--TCA-A-GC-----GA-G-AGCC-TTCCAAAAAATGT---C----C--CAGGAATA-TCAAA-AA-CAGT--T--T-GCAACGTTTAACT----CATG-GGAC---A-G-TT-------G-TCCC--ACT-AAA--TTACTT----T-AGGATTTT-T-TCGA--A-T-A-ATG-CC-TAT--GAC-GAT-TTTGTTACTTT-TT-GTTTG-AA-G--TG----G-CGA--CTTC--C-A-AGGC-A-TTTTTGGCGAC--G------T-TTTT----------------ATA--TGCGCAA-ATC-ATTGG-GAAAT-GT---GGCG-ATTTCCGGCC-TCGGAATTTT-TAT-TG----GTTCTGGGGAAC--TT-CA-ATTTTATAC-A-AG-TTTTATTA--CT-TT--TTTGCGGTAAACAGAATTAA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCC-CTTTAGG-A-ATTT---GG-AATTCAAAGTA--GTAGC-A---A-GAAATCAGATG-TAAATA--TT-TTTTTCTTA-TAT-AATTCCT-TTT-GTT-CGGG-C-CATT-GGCGATCGGGGAATGCC-AA-----C-A-TGGCAGATTt
gi|20 : CAGTAGTATGGTTTAGCC-----GGCCTAG-TGGCT--AGTA-CTGAACTAGGCCGACTAAC-----TTCT-GAACTTCATGTCACC-TTTCAATTCTTT-GTCCCAATGGTTGGGCCCCCCGG----GTGGCCCAAGTAATTAAATATA-AA-CTTAAATTGGCAAAG---AG-TAAATGGAA-AATT--G-ATATCCA-T----CGGGTATGACC-TGGTCGAAT-GA-T---AGT-AGGT-ATA--T---CTTGGTT
gi|21 : agagctCAGTAGTATGGTT-AGCCG-----GCCTAG-TGGCTTTAGTA-CT-GACTAGGCCG----ACCTACATTCT-GAACTTCATGT-ACCCTTTC-ATTCTTTTGT-CCAATGGT--GGCCCCCCAGGGGGGCCC---AAGTAATT-AATAATAAA-CTT-AATTGGCAAG----AG-TAAAT-GAA-AATT--G-ATATCCA-TG-----GGTTAGACC-TGGTCGAAT-GA-T---AGT-AGGT-ATA--T---CTTGGgaatttttaa
gi|22 : gagctTATAC-A-AA-TTCTATTAAAT--TT--TTTTCGGAA------------GTTCTTTTG-TGAT-AGTAA-CATC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTG-TGCAGC-A---AGGAAATTAGATGTTAAATT--TG-TTTTCCTTA-TAT-AAT--CC-TAT-GTT-C-GG-C-CATT-GGCGATC-GGG-AT-CC-AA-----T-A-TGGCGGTTTAgttgaatt
gi|23 : AAGA----G-TCAGT-GAA-AATT--GA-TATCCA-CGTAAC-GGCAG-ACC-TGG-CGAATGAA-AA--AGA-ATAA-ATA---------AGTTCA----TTTCTTGGG-G-TAGAAATAGA----A--G----TA--C-A-TT-GGT------------------------------TG---AA-AATTAACAG-A-A-ACATTTTTTTT----AAA--TCG-ACGT-----GA-G-AACC-TT--AAAAAATGTA--G----CATTA-GAATG-TCAAA-AA-CAGT--T--T-GCAACGtgcacattagcaaaacagtaatatttctggcga
gi|24 : -C-A--CTT---C-A-TGGC-A-TTTT--GCGAT--T------T-TTTTTTTTTTTTAAACTAAAAT---TGCGC-C-ATT-ATT-G-GAAAG-ATAGTGGTG-ATTTCC-GCT-TCAG-GCTTT-CAA-TT----GTTCTGGG-GCTGGTT-CA-CTTTTATAC-A-TA-TTTTATTA--C--TT--T
gi|25 : TTG-AA-G-TTG----A-C-A--CTTAATC-A-GGGC-A-TTTC--GCGGA--T------TGTTTT----------------ATA--CAAAC-T-GTC-ATT-G-GAAAC-AT---GGAT-ATTTGT-GCT-TTGT-ATCTT-CTA-TT----GTTCTGGGAACC--TT-CA-CTTgggggggggggggttaaacgttcttt
gi|26 : C-A---AGATAATTAGTAGC-AAGCA--TT-TTTTCCTCA-TA---GC--CC-TTT-GTTTC-GG-AACATT-GGCGATC-GGT-AT-CC-AA-----T-A-TGA-AGTTTA
gi|27 : CTAA-CAT-AAG--TC-TAT-GTT-T-GG-C-CATT-GGCGACC-AGGAAC-TC-AT-----CTATTTGCGGTTTtggcaattacaaaccggtaataatctggc
gi|28 : gttaaactaatatgCTTTCG-TGAC-TGTAA-CGTC-TCCTCTTTAGG-A-TTTT---TTAAATTCAAGGAA-TTAAAC-A---TGGAAATTAGA-ACTAAATA--TT-TTTTCTTTA-TAT-AAT--CC-Ttgcaaattaatcaattatacagtaaaatttctg
gi|29 : -----G-G-TT--AACAGA----ACTG----AG--C-G-TTTGGTC-----CTT---------------------TAGTAAA-AATTCACAG-ATA-TCGTCATTTT-----GAA--TCA-A-GC-----GAGG-AAC
gi|3 : aagttcaactaatatgCAATAGTATG---TAGTTGC--AG-CGTGGACAGGT---GTA-CT-AATCAAGACG----AC-----TTCT-GAACTTCATGT-GCC-TTTC-AT-ATTT-GT-CCAATGGT--GGCC----------GT-----AAGTAATTTAATAAT-AA-CTT-AATTGGCAAGA---AG-TAAGT-GAATAATT--GAATATCCA-TGTAAC-GATAGGACCGTGGTCGAATGGA-TG--AGTTAGGC-ATA--T---CTTGGTTGAAA--CTT----------TGAAATAAA----ATGG----TA--C-A-TT-GGTCCC---GGC---------------------TG---AAGAAT-----G-A-A-T-AT--TTTTT----AAA--TCACA-GC-----GACG-GCCT-TC-CAAAAAATGTC--G----C--CG-GAATA-TCAAAGAA-CAGT--T--TGGCAACGTTTAAGC----TATG-GGAC---A-G-TT-------G-T--CCCACT-AAA--TTACTT----T-AGGA-TTT-T-TCGA--A-T-A-ATG-CC-TA---GAC-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--TTT---C-A-TTGC-A-TTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-ATTTT-TAA-TT----GTTCTGGGAACC--TT-CA-ATTTTATAC-A-AA-TTTTATTA--C--TT--TTTGCGGTAAACAGATT-AA-GTTCTTTTG-TGAT-AGTAA-CGTC-TCCTCTTTAGG-A--TTT---GGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCGATC-GGGAAT-CC-AA-----C-A-TGGCAGATTA
gi|30 : gtttcaaTA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC-GGGAGT-CC-AA-----T-A-TGGCGGTTTAa
gi|31 : TA-TAT-AAT--CC-TTTCGTT-C-GG-C-CATT--GCAATC-GGGAGT-CC-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtaatatttctggcaat
gi|32 : TA-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT-GGCAATC--GGAGT--C-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtatatttctggcaatg
gi|33 : A-TAT-AAT--CC-TTT-GTT-C-GG-C-CATT--GCAATC--GGAGT--C-AA-----T-A-T-GCGGTTTAtgcaaattagcaaaacggtaatattttggcaat
gi|34 : AT--CC-TTT-GTT-C-----------GGCGATC-GGGAATGCC-AATATTGC-A-TGGCGtgcaaattagcaaaacggtaatatttctggca
gi|4 : ATATT-AA-TTT-ATGTGACCAGA---AGATAAGC-GGA-ACTTCCAAACTTTAACTATACC-GGTAG-ACC-AGAGCGAATG-A-CA--AGT-AGGC-ATA--T---CTTGG------------------G-TTGAAATAGA----ATAG----TA--C-T-TT-GGTC-----TTT---------------------TAGGAAA-AATTCACCG-A-GGTCTTCATTCCT----AGA--TCA-A--T-----GAGG-AACC-TT-CAAAAATTA-A--A----C--CA-GAATG-TCAAA-AA-TGGT--A--TG-CAACGTTTA-TT----GATG-GGAC---A-A-TT---------T--C----T-GAA--T-----------AGGG-TTT-T-CCAC--A-C-A-ATG-AA-CA---GAC-GA--TTTGTTAT-GT-TT-GTTTG-AA-G-TTT----T-C-A--CTT---C-A-TTGC-A-ATTT--GCTAT--C------T-TTTC----------------CTT--TACAC-T-ATC-ATT-G-GAAAT-AT---GGTG-ATTTGC-GCT-TCAG-ATTTT-CAA-TT----GTTCTGGGAACC--TT-CA-CTTTT-CAC-A-TA-TCCTTTTG--CC-TT--TTTTTGGAAAACAA----AAAGTTTCTTTG-TGAC-TATAA-CATC-TCCTCTTTAGG-A-TTTT---AGAAATTCAAGGTA-TGTAGC-A---TGGAAATTAGATGTTAAATA--TA-TTCTTCTTA-TAT-ATT--TC-TTT-GCC-C-GG-C-CATT-GGTGATA-GGAGAT-CC-AA-----T-A-TGGCGGCTTAttatgccaaattagcaaaacggtaaactggcaag
gi|5 : cctttttttatcgtagctttctttttaggggA-TATACC-GGTAG-ACC-TGACCGAATG-A-TA--CGT-AGGC-ATA--A---GTAAGTTCG----CTTCTTG-G-A-TTTCAATAGA----ATGG----TA--CTA-TA-GGTCTTATAAGT---------------------T----AA-AATTCACCC-A-AGTCATCATTTTT----AAA--TCA-A-GC-------------C-TT-CGAAA--TTTA--A----A--CA-GAATA-TCAAA-A--CGGC--A--TG-CAACGCTTA-TT----TATG-AGAT---A-A-TT-------G-T-----ACT-AGA--TTACTT----T-AGGA-TTG-T-TCAA--A-T-A-ATG-AA-CG---GAT-GATTTTTTTTAT-GT-TT-GTTTG-AA-G-TTG----A-C-A--CTT---C-A-TACCGA-TTTT----------------T-TCTT---------------------TGAAC-C-ATC-TTT-G-AAAAG-CT---GGTG-A-----------------CTT-CAA-TT---------------------CA-TTTTTATAC-A-TA-TGTTATTG--C-------TTGAGG-GAACTT----AA-GTTCTTTTG-CGAC-TGTAA-CATC-TCCTGATTAGG-A-TATT---AGAAATTCAAGGCA-CTTAGC-----TTCAAATAAGAAGTTTAATA--TT-TTTTCCTTA-TAC-AAA--TT-TTC-CTT-T-GA-C-CATT-CACGATG-GGGAAT-TT-AA-----T-A-TGGTGGTTTtgtaaattagcaagacggtaatatttctggcaatg
gi|6 : taatctatataaacagaaatgtagtggagtttgcaaactttcacaatatttcaagtA--C-A-TT-GGTCC----GGT---------------------TG---AA-AA----------A-TGATCATTTTTTTTAAAA--TCA-A-GC-----GAGG-AACCCTT-CAAAAAATGTA--C----C--TA-GAATA-TCAAA-AA-CAGT--T--TG-CAA-GTTTAACTA---CATG-GGACC--A-A-TT-------T-T--C--ACT-AAAATTTACTT----T-CGGA-TTT-T-G-GA--A-T-A-ATG-CC-TAA--GAA-GA--TTTGTTAC-GT-TT-GTTTG-AA-G-TTG----G-C-A--TTT---C-A-TGGC-A-TTTT--GCGACCGG------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAAAT-GT---GGCG-ATTTCC-GCC-TCGG-TTTTT-ATA-TTA---GTTCTTGG-------T-CA-ATTTTATAC-A-AATTTTTATTA--C--TT--TTTGCGGAAAACAG-------CTTCTTTTG-TGATAAGTAA-CGTC-TCCTCTTTAGGAA-TTTT---GGAAATTCAAAGTA--GTAGC-A---AGGAAATCAGATGTTAAATA--TT-TTTT-CTTA-TAT-AAT--CC-TTT-GTT-C-GGCC-CATTGGGCGATC-GGGAAT-CCAAA-----C-A-TGGCGGATTAgttgaaattagcaaaattgtaatatttctggcaatg
gi|7 : A--C-A-T---GTC-----GGT---------------------TG---AA-AAT-------G-A-TCAT----TTT----AAA--TCA-A-GC-----GAGG-AACC-TT-CAAAAA-TGTA--C----C--TA-GAATA-TCAAA-AAACAGT--T--TTGCAACGTT-AACT----CATG-GGAC---A-A-TT---------T--C--ACTAAAA--TTACTT----C--GGA-TTT-TATGGA--A-T-A-ATG-CC-TA---GAA-GA--TTTGTTAC-GT-TT-GTTTG-AA-GTTTG----G-C-A--CTT---C-A-TTGC-ATTTTT--GCGAC--G------T-TTTT----------------ATA--TGCGC-C-ATC-ATT-G-GAATG------GGCG-A--TCC-G-C-TCGG-ATTTT-TAATTT----GTCTTGG----------CA-ATTTTATATGA-AA-TTTTA--A--C--TT--TTTGCGGAAAAC-------A-GTTCTTTTG-TG---AATAACCGTC-TCCTCTTTAGG-A-TTTT---GGAAATTCAAAGTA-GTTAGCAA---AGGAAATCAGATGTTAAATA--TT-TTTTCCTTATTATAAAT--CCTTTT-GTT-C-GG-C-C-TT-GGCGATC-GGGAAT-CC-AA-----C-A-T-GCGGATTAtgcaaattagcaaaaacggtaatatttctggcaat
gi|8 : ----AAA--TCA-AAGCTGGAAGGGA-AAGC-TT-CAGAAA---TA--AAGCCC--CA-GAATG-TCGAA-AA-C-GT--TAATG-CAATGTTTTATT----TATG-GGAC---A-A-TC-------A----C--ACC-AAA--TTACTT----TCAAGA-TTC-T-TCAAC-A-T-A-ATG-AAGCA---GACCGA--TTTGTTAT-GT-TTTGTTTGGAA-G-TTT------C-A--CTT---C-A-TACC-A-TTTTT-GCGAT--C------T-TTTT----------------CTA--TGCAA-CGATCGATT-G-GGAAG-AG---GGTG-AACTCC--CT-TCAAAGTTTT-CGA-TTTTTTGTTCTGGGAATCG-CT-CACAATTTATAC-A-TA-TTTTTCTA--T--TT--------GAAAACAG----AA-GTT-TCTCGCTGAC-TGTAA-CGTC-TCCTCCGTAAG-ATTTTT---AGAA--TCAAGGTATTGTAGG-A---AGG-AATTAGATATT-AATA--TT-------TTA-TAT-AA---CC-CTT-GTT-C-GG---CATT-GGCAATG-GTGAAT-CC-AG-----C-A-TGGCGGTtgccaaattagccaaaacggtaatttggcaat
gi|9 : ttaaA-TA--AAT-AGGTTATAAAT---ACAGGTTCAC---TTT-----G-G-TTGCAAAAGAGCACATGAACTTTATCC-GCTT-GATT-----AGT---------------------GA---AA-GATTCACCG-A-G-TCTTCATTTTC----AAAACTCA-A-AC-----GAGGAAACA-TC-CAAAAAA-GTAAGA----C--CA-GAATAGTCAAA-AA-AAGTAAT--CCGCGAC--TTA--T----TATG-GCTA---A-A-TT-------ACT--C--ACT-AAA---TACTTAATGT-AGGC-TTTGT-CCAA--A-TAA-ATGAGC-CA---TCA-GA--TTTG-TAT-GTCTT-G-TTG-AACG-TTGCACAG-C-ATTCCC---C-A-TGGCAA-TAGT--G-GAA--GATCAAAT-TTTT----------------CTAATTGAAC-C-ATC-ATA-GAGAAAGTATCA-GATG-AATTCC-GAT-TCAGCGTTTT-CAGCTT----GTaatgcagcataaacggtaataaatctggcaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|35 ): TCAATTGCTCAGGAGGAAATAAATTAATTCATTTTTGTACATATTTATTACTTGAGTGGGGGGGGGGGGG
Unaligned ( gi|36 ): ATTGTATGCATTTTCTCTGCATTTAAAACTTTTGTCTT