lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222222222222222222222222222222 1111111111111111 11111111111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111111111111111 1111111111111111111111111111111111111111 11111111111111111111111111111111
lowQualScore : 1111111 111 11 1111111 4444 111 1111111111 8888888888888888888888888888888888888888 111 222 33333333333333 1111111111111 111111 222222222222222222 22222 1111111 33 1 1 0000000000000000000000000000000000000000000000000000000000000000000 222 22 1 6666666666666666666666 11 11 666666666666666666666666 3333333 2222 3333333333333333 4444444444444444444444444444444 11 111111 66666666666 11 1 444444444444444444444444444444 3333 1 7777777777777777777777777777777777777777777777777 11 11 55555555555555555555555555555555555555555555555555555555555555555555555555 1 111 333 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 1 1 33 2 2 22 2 333 333 2 2 2222 444444444444444444444444444444 1 4 1111111111111111 333333333 55555555555555555555 22 2 44444444 111 222 1 3333333333 1 22 1 11 11 11 1 1 1 1 2 22 1 1 2 9999999999999999999999999999999999999999999999 11 4444444444444444444 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 4444444 1 4444 5555 22222 2 333333333333 666 2 1 000000000000000000000000000000 1 33 222 11 2 222 4444444444444444444444444444444444444444 333 11111111111111111111111111111111 2 2
lowQualScore : 5 5 5 5 5 1111111 5 000 5 11 5 5 5 5 5555555 5 3333 77 5 5 77 555 5 5 5 77 77 77 5 5 7777777777 5 1111111111111111111111111111111111111111 5 000 5 000 55 55555555555555 8888888888888 333333 5 999999999999999999 5 55555 2 3 3 9999 3333333 66 33 0 0 3333333333333333333333333333333333333333333333333333333333333333333 000 3 33 0 3333333333333333333333 11 0 8 11 444444444444444444444444 3333333 6 99 6 1111 6 6 6 99 6 6 6 5555555555555555 5555555555555555555555555555555 5 3 99 00 6 6 6 6 3 999999 00000000000 8 11 8 2 8 888888888888888888888888888888 8 4444 0 5 8888888888888888888888888888888888888888888888888 99 33 77777777777777777777777777777777777777777777777777777777777777777777777777 6 444 8 888 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 5 5 00 3 0 2 0 77 4 0 555 2 555 0 2 0 5555 111111111111111111111111111111 6 5 0 7777777777777777 4 3 4 666666666 2 11111111111111111111 33 0 2 2 4 11111111 777 777 0 0000000000 0 77 3 3 3 3 88 44 0 0 6 3 33 33 33 66 0 0 3 3 3 4 0 2 22 4 5 5 0 2 5555555555555555555555555555555555555555555555 88 0000000000000000000 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 8888888 5 6 2 2222 6666 66666 0 888888888888 222 0 5 444444444444444444444444444444 4 3 2 7 4 11 666 4 88 0 000 2222222222222222222222222222222222222222 888 6 4 2 4 00000000000000000000000000000000 0 0
lowQualScore : . . . . . ....... . ... . .. . . . . ....... . .... .. . . .. ... . . . .. .. .. . . .......... . ........................................ . ... . ... .. .............. ............. ...... . .................. . ..... . . . .... ....... .. .. . . ................................................................... ... . .. . ...................... .. . . .. ........................ ....... . .. . .... . . . .. . . . ................ ............................... . . .. .. . . . . . ...... ........... . .. . . . .............................. . .... . . ................................................. .. .. .......................................................................... . ... . ... ........................................................................................................................................................................................................... . . . .. . . . . .. . . ... . ... . . . .... .............................. . . . ................ . . . ......... . .................... .. . . . . ........ ... ... . .......... . .. . . . . .. .. . . . . .. .. .. .. . . . . . . . . .. . . . . . .............................................. .. ................... .......................................................................................................................................................................... . ....... . . . .... .... ..... . ............ ... . . .............................. . . . . . .. ... . .. . ... ........................................ ... . . . . ................................ . .
lowQualScore : 7 7 7 7 7 0000000 7 000 7 66 7 7 7 7 1111111 7 3333 99 7 7 99 777 7 7 7 99 99 99 7 7 1111111111 7 9999999999999999999999999999999999999999 1 000 7 000 99 99999999999999 5555555555555 888888 0 999999999999999999 0 66666 0 9 1 6666 5555555 99 88 0 0 5555555555555555555555555555555555555555555555555555555555555555555 222 2 88 0 8888888888888888888888 00 8 0 00 222222222222222222222222 0000000 7 22 7 4444 7 7 7 22 7 7 7 8888888888888888 8888888888888888888888888888888 0 2 22 88 7 7 7 7 5 222222 55555555555 0 00 0 8 0 000000000000000000000000000000 0 0000 6 0 6666666666666666666666666666666666666666666666666 00 88 00000000000000000000000000000000000000000000000000000000000000000000000000 0 222 0 000 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5 5 55 0 0 5 0 55 0 0 000 5 000 0 5 0 5555 000000000000000000000000000000 0 0 0 5555555555555555 0 0 0 555555555 5 00000000000000000000 00 0 5 5 0 33333333 555 555 0 8888888888 0 22 2 0 2 0 00 88 2 0 0 2 22 88 55 55 0 0 2 3 3 0 0 5 55 0 5 5 0 5 0000000000000000000000000000000000000000000000 00 5555555555555555555 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 2222222 5 0 5 5555 0000 55555 0 000000000000 555 0 5 555555555555555555555555555555 0 0 5 0 0 55 000 0 55 0 555 0000000000000000000000000000000000000000 555 0 0 5 0 00000000000000000000000000000000 0 0
consensus : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-AT-ACC--GAGA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA-TG---T--GAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----C-TGG--TGAT-TT-AAC-GGA----T----GGCGCGGCGGNTNANNTNNGTCNNNGNNANNGNNGNAGGNNAG-TG---ACACCC---CCCCCCCCCAA-ATCGTC--GAG-ACCCGTAGT---TGGTTGT-GAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TA-ACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAG-T----CAT---GGAATCCGGGGAAAAA---GGATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC------ATCATCGATCTG------TTA-A--TGTTTC-CTTCTTTCGAACGTGA-TTCAC-AT--A-AT-ATGGATA----AATTA-NNTCTTTT-TC--ATTCTTGAATGTGTTGATTT--C-----T--G---TTTT--AAA-----TTTTTAG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTA-ATGTGNTTCAATATCAACACACTATCAGGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAAATCACTACAGGGTGAAA-G-AACG-CTACG--AATATCGTGTAAT-AT--A--TT--G-----TAC--ATG-T-----NACAA-CACAA---TT-AATCTTNAT-AATAATGCGA--GT----ATTT-CGA-AATATTA-TTGT-GCCTCCTCCCCCTCCCCTACGGTTTTTTTTTTTCAATTGAGTAAGCNGGNGTTAACAAATTAATGTTATATAAAGTGTCAGCAATGCAGAATGTNCGGGTTACTAGAAATTATGAATTGAANACCNTGGCATCNAGGACCCGCGCCCACCCCNTATTAAGGCATAATTTTNAGCAAACAACGATTNCACTAATANCATGCCCCCCCNCCC--AT-------TTTTTTG--------TATATGTATATCCAATATATTATT----TTATTATNGGATTAAGATNTAGNANTTGGTTCAATNCTAAAANCTTTTTAGTAGTAAGTTA-AGGGATNACTTTCATNCCAAACANATTCNTCTAACANTTCATTTTTGTGACA------GAAAGAA---GAGG--TGA-AATATGGAGCG--GAAACCC-GCTTTTGATNTCAAGGGTGGCAATATTAANATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAACNTGGCATGCNGCCCNTCGTCAACTCNTAAACGTTTATTCATANAATTATGGATTACAATTATTTATCNAAAGGTCCCATACCGTGCACATATGTCTTTGGTTATTTAAGATTCCCTTNCAGCATGCATGCACTGCA-GCATGN----TGTTATAACTT--ATAATCAAA-ACATATG-TATG-TGTTAAATTAT-A--A-ATA------TT-----T--TTC-AT--TAAATCAC-A-ACT----TGAAA-TT-TGAAAATTCATG-T---CATCAG-T-GTT--TTNAA-GTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTGGGGTTATTGT-TCATGGNCCTAGTCGTATTGGCCAAGTAGAGGTACTNTTAATTTTNATTTATAGGCCTATAACGACCTACTGTATTNANAACANCANNAGCAAGAAAACNANCNTTAGGTTCNTTTTATGTTTAATTNATCATGTTAGTACGTGCGAAGTTACATACGACACACCATCAAANTCATTCACAAACTTAATAGTCCTGTCTATCAAAAAAGGTCACTGANGANANAGTNNNTGAAGATCNCACATGCCNCA-TTTCACGTAGACTGGAAGAAATTCT
Reference ( gi|2 ) : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-ATAACC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA-TG---T--GAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----C-TGG--TGA--TT-AAT-GGA----T----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTTAC-TG---ACACCC---CCCCCCCCCCG-ATCGTC--GAG-ACCCGTA-----TGG-----GAGTG-CATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAT--TA-ACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAG-T----AAT---GG-----------------GGATGTGCATTTCAC--AAAAAGTAT-CAC-TAAA-TCAGG-TTAGGCCCTATC------ATCATCGA-CT-------TTA-A--TGTTTC-CTTTCTTCGAACGTGA-TTCAC-A---A-AT-ATTGATA----AATT--TTTCTTTT-TC--A-TCTTGAATGTGTTGATTT--C-----T--G---TTTT--AAA---TTTTTTTAG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTACACGTAATT--AT-T--A-----T-TTA--TACTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGATAAA-CACTACAGGGTGAAA-G-AATG-CTAC---AATATC----AAT-AT--A--TT--G-----TAC--ATG-T-----AACAA-CACGA---TTAAATCTTAATTAATAATGCAA--GT----ATTT-CGACAATATT--TTGTTGCC------CCCCCCCCT---------TTTTTTTA------TAA----------------TA--G-------------CAG-------GA-T-TG-GGGTTA-TAGAAATTATGAATTGAAC-CCATG-CATCCAAG-CTCAC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAATGA-TGCACT-ATATCATACCCCCCCTCCCGAATTGTTGTGTTTTTTGTTTTTGTATATATGTACATCAAATAT-TTATTATGTTTTTTATGAAA-TAAGATTTAAAATTTG--TCAATA-TAAAACCTTTTTAGTAGTAAGGTACATGTACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGAAA------GAAAGAA---GAG---TGA-AATATGGAGAG--GAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCTGTACTTCCC-AGAAATCTGACAGAGCCAAGTGAG--AGGACTCAATTGAGA-TGCACA-CTGG-ACC-AAAATTTGGCAT-CCGCCCG-TGTCAACTCATAAACGTTTATT-ATAGATTT---GA-TACA-----T--TCCACAGG---CAT--TGTG-AC--ATGTCTTTGATTA-T--AAATT--CTTACATCATGTATACACTGTATACATGA----TGTAAGAATTT--ATAATCAAGGACATATGTTATGTTGTTATATTATTACAACATAG----GTT-----TGCTTT-ATCATAAATCAC-A-AC-----TGAAA-TTTTGAAAA-TCATATTT--CATCAGAT-GTTGCTTTAACGTCAAA----AACAT-TGCAGCACAATTAATTTATAAGCATA----TATTGTGCCATGGGCAT-GTTGT-TTGGCCAAGT-GA---ACTC--AATTT---TTTATA-GCCTATAACGA-CTACTG----TATAACATTATTTGCAAG-AAACAAACCTTTGGTTCTTTTAATGTGT-ATTAATCATGTTAGTA-GTGGG-AGTTACAT---ATATGT------AATCA-TTA-AA--TTA--------GTCTATCAAAACA-GTCGCTGATGACAAAGTCACTGAAGATTTTA-ATATCACATTTTCACGTAGACT-GAAG-AATTCTT
gi|8 : ACATAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTG-AG-T-CACGG-TTGGGGGGGGGG-G-GT-ACC--GAGA-A-CAC--TTGATTA---GATAAGA-CGC-TTGGAACGT--A--AA-CA-AA-GG---T--GAA-ATC----------CTG---G----T-------GT-GTAC----CACTT---TG-T---TG--TG-G-------------TGG-----GGTTACT-GTA-------AAGTTT-TC-CAAA--C-AAAT----CAGGTAA-ATA-CACTTGAAATGGA--G-GG-----T-TGG--TGAT-TT-GAT-GGA----TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN---NNNNCCAATCCCTACCCCTGTATCGTCG-GAG-ACCTGTAGTCTTTGA-----GAATGCCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCC------CTACTATGATAAT--TA-CAGACAAA
gi|4 : CAAACGCAAG-C-AACCGGGTT---TT-CCCG---TT-T--GAATTTT--G-TGCACGG-TT----TATGGG-GGATTACC--GAAA-A-CGCCCTTGATCGAGAGAT-AGA-CGC-TTG--ACGTCAA--GA-CA-AA-TG-------GA-ACA----------CTGGTGTG---T-------GT-A-------CACAT---CG-T---TG-TTG-GT-----------TTGG-----GGG---C-GTAAGACC--AAGTTTTCC-T--GTTC-AAATT---CAGG-AA-TA--CACCTAAA-TGGA--A-AGTAGCCC-TGGGCTGGATTT-AACCGGAACACG----GGAACGGTGGATTATTTGAGTCTGTGATAATGATAGAGGC-AG-TGTGTACACAC---CCCAAATCTAA-ATCG----GAGGACCC--A-----TGGTTGTTGAATG-TCTTC--GTGTTGCTAA-TA--ANNNNNNNNNNNNNNNNNNNNNNNNNTAGACCC------CTACTATAATAAT--TA-CAGACAAAAT--TA-ACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---AAC--A---GAAAAACAAAAGAAG-T----CAT---GGAATCCAGGAAAAAG---GGATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCAATC------ATCATCGATCTGATAATGTTA-AATTGTTTC-CTTCTTTCGAACGTGA-TTCAC-ATATA-ATAATGGATA----AATTAAAATCTTTT-TCCAA-TCTTG-ATGTGTTGATTT--TCTGGGT--G---TTTT--AAA----------AA--GCAAAT-----ACTAAAATA-GGGGTATTCATTGTA
gi|1 : AAAC-CA-G-CTA-CCG---T---TT-CCGG---TT-TTTGAATTTTTAG-T-CACGG-TT----TATGGGTG-AT-ACC--GAAA-A-CGC--TTGATCG---GAT-AGACCGC-TTG--ACGT--A--AA-CA-AATTG---T--GAATATACTCATATTACCTG---TCAC-T-------GT-GACTGT--CATCT---TG-TGTCTG-TTGTGTACACATCGTTGTTGGTTTGGGG----CCGTTA---C--AAGTTT-CCTT--A--C-AAAT----CAGG-AA-ATA-CATTT----T--------------T-TGG--TGAT-TT-AACGGGA----A----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NA---ACA--------ACCCCCCAA-ATCATCTGGAG-ACCCGC------TGGTTGT-GAATGTCATTC---TGTTGC--C-TAATAA------------------------TAGACCA------TTACTAAATTAAT--TACCAGACAAAAT--TA-ACG-GTCCCTT--G-C-ATGGGAAT-GGATGG---A-CAGA---GAAAAACAAAAGAAGAC----AAT---GGAATCCAAGGAAAAAGGAAGATCTGCATTTCAC--AAAAGATAT-CACATAAATTCAGG-TTAGGCCCTATC------ATCATCGATCTG------TTA-A--TGTTTC-CTTCTTTCGAACGTGA-TTCAC-AT--ATAT-ATGGATA----AATTA-AATCTTTT-TCA-A-TCTTGAATGT-TTGATTT--G-----T--G---GTTT--G-------TTTTTAA--A-AGCA-----ACTAAAAT--GGGGTA--CA-TGTA----TGATT--AT-TCAA-----TATTA--CACtgttaaattcaatattacat
gi|6 : acaAAAC-CA-G-C-A-CCG---T---TTTCCGG---TT-TT-GAATTTT-AG-T-CACGGTTT----TATGGG-G---GATC--GAAAGA-CGC--TTGA-CG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA-TG---T----A-ATA----------CTG---TTG--T-------GT-A-------CACAT---CGAT---TGTTTG-GT-----------TTGG-----GG----C-GTAA---CA-AAGTTC-GC-T--A----AAAT-----AGG-AA-TA--CAC-TAAAATGGA--AGGG-----C-TGG--TGAT-TT-AAC-GAA----C----AACGGAACGGTTGAAATTTGTCGTAATAATGATAGTAGGGGTG-TA---ACA---------CCCCCCAA-ATCATC--GAG-ACCCGTGGT---TGT-----GAATGTCATTTCGGTGTTGCTACGTA--AA------------------------TAGACC-------CTA-TATTATAATTATA-CAGACAAATA--TA-ATGCGTCCC-T--GCC-ATGGGAATGGGAT-GA--A-C--A---T-AAAACAAAAGAAG-TCGGGAATCCAGGAAAAA------------GGATGT-CATTTCAC---AACCGTAT-CAC-GAAA-TCAGGCTTAGGCCC--TC------ATCacttcaggtaagagagagagagagacgagaggagagaccgagaggagagaggcagagagcactacaggtgaaaagaatgctaccaatatctatattgtacattcacaaccaaaatttcaatcttaataataatgcgaaggtatttcaaaatattatttgtgcccccttttttttttataaattgaagttaacaaattaatgcagcaatgcagatgttgggttatagaaattataaattgaaaaccatggcatcaaggactcacccaccccatattaagaaattttgagacaatgatgcactaataacatacccccccccatttttttgtatatgtatatccaatatattatttgaaattaagatttaaaaattgtcatctaaaaccttttttagtaagttaagggatcactttcatcccaacacattcctttaacatttcatttttgtgacagaaagaagaggagtgaaatatggagcggaaaccgcttttgtgtcaagggtggcaatattaaaatcagtacttaccaggaatctgacaggtccgagtgagaaaagactcaatcagactgcacatgaccaaaatatgacatccgcccgttgtcaactcttaaacgtttattatagattgattacattatccaaaggcattgtgacatatgtcttgttattaaattcccttaaatgtatacactgtaatgttgttatattatacaacattagctttggttttattataaatcacaactttgaaatttttgaaaattcatatcaattatttaaaaagtaaaaaacatgtgcaggcaaaatttataggcatatattgttcatgggcctgttgtttggccaagtgaactgaattttcatttatagcctataacgacctactgtatttataacaataaaagcaagaaaacaaaccttaggttctttttatgtttaattaatcatgttagtagtgggaagttacatacgatacatcatcaaaatcatttaaattagtctatcaaaaagtcactgatgacaaagtatatgaagattcaattcataaaactgaagaaattctcctgttgtgcatcttggtctatacttgggaatgcagtattggataaagtggtccaatagttcatcatgtatagaaaagggtaacttcagggaaatctgaaatgagtttgaaagtgcattcaa
gi|5 : AC-CA-G-C-A-CCG---T---TT-CCGG---TT-TTTGAATTTT-AGAT-CACG--------------------------AAA-ATCGC--TTGATCGT--GAT-AGA-CGC-TTG--ACGT--A--AATCA-AA--G---TTGGAA-ATAT---------CTG---TGGTGT-------GTCA-------CACATATATG-T---TG-TTGCGT-----------TTGG-----G-----C-GTAA---C--AAGTTT-CC-A--A--C-GA------TAGG-AATAC--CACTTAAAATGGC--A-GG-----CTTGG--TGATTTT-AAT-GGA----
gi|11 : atC-CA-G-C-A-CCG---T---TT-CCGG---TT-TC-AAATTTT-AG-T-CACGG-TT----AATGGG-GTAT-ACC--GAGA-A-CGC--TTGATCA---GTT-AGA-CGC-TTG--ACGT--A--AA-CA-AA-GG---T--GAA-ATA----------CTG---G----TGTGTACAGT-A-------CATAT---TG-C---TG-TTG-GT-----------TT-G-----GA----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-GTA-CACTTGAAATGGA--G-GG-----C-TGG--TGA--TTGAAT-GGA----T----ctacgggaaccggtttatttggtcatgtatatattgatagtagggtgaaacctcaccgtagtacgtcggagaccccgtgttagaccagggtatctaataataattacagacagatatacggtcccttgactatgggaatggatgtggacatgtaaaacacaaaagaagttcatggggattgcatttcacccaaaagatattcactaaatcaggttaggccctctcatcatcgatctgtatacctttcctttttcgaacgtgagttcactaaatatggataaagttttttcttcattcttgatgtgttgatttctgggtttttaaaatccttttttaggcgacagctatactaaaatggggtac
gi|10 : -CA-GAC-A-CCG---TGTATT-CCGGCGTTTATT-GATTCTT-AG-T-CACGG-TG----TA-GGG-G-GT-ACCTGGAGA-A-CGC--TT-ATCG---GAT-CGA-CGCTTTT--AAGT--ACTAA-CATAA-TGGGCT--GAG-ATA----------CTG---T----T-------GC-ATGGATACCAC-T---TA-TGAGTG-CTGCCT-----------TCGG-----AG----G-GTCA---CAAAAGTTC-CC-CGGA--CTGAATATCGCAAG-AA-ATTACACTTAAAATGGAGGA-GG-----T-TGG--CAAT-TT-AAT-GTA----T----cacaa
gi|15 : cgGG-----GG----C-GTAA---C--AAGTTT-CC-T--A---------------G-AA-AT--CA-------TGGA--A-GG-----C-TGG--TGA--TTAAAT-GGA----T----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGTG---TAACCC---CCCCCCCCCC
gi|7 : c-----TGA-----AAATGTCATAC--GTGATGCTAT-TA--AA------------------------TAG--CAT-----CTACTATAATACT--TA-CAGAAAAAAAAATA-TCT-GTTCC-T--G-T-----GAAA-GGAT-GG--A-C--T---GGAAATCAAAAGAAG-C----CAT---GGAATCCGGGGGAAAA---GGATGTACATTTCAC--AAAAGACAT-CAA-CGAA-TCAGG-TTAGGCCCTATCCCTATAATCATTG-----------TTG-A--TGTTTTACTTCTTTCGAATGTGA-TTCAT-A---T-CT-ATTGATATTGTTTTT--TTTCTTTT-TC--ATTCTTGAATGTTTTATTTT--C-----TGGG---TTTTAAAAA---TCTTTTCAGGTGCAGCT-----ACTAAAAT--G
gi|5 : tagtaatgatagtaagggtctatacagtaccgatcccttcgtatctgaggagaacccctgtggtcct------------------------TAGACCAGGGTATCTA--ATAATAAT--TA-CAGACAGA----TATACG-GTCCC-TTGA-CTATGGGAAT-GGAT-GTGGA-C--ATGTAAAACACAAAAGAAG-TT---CAT---GG-----------------GGAT-TGCATTTCACCCAAAAGATATTCAC-TAAA-TCAGG-TTAGGCCCTCTC------ATCATCGATCT-------GTATA--CCTTTC-CTTT-TTCGAACGTGAGTTCACTA---A-AT-ATGGATA----AAGT--TTT-TTCT-TC--ATTCTTG-ATGTGTTGATTT--C-----T--GGGTTTTT--AAAATCCTTTTTTAG--GCGACAGCTATACTAAAAT--GGGGTA--Ctgttatgttgtattcttgaaattacacagccaggtaatattgattgagagagagagagagagagaga
gi|19 : ataccagcaccgtttccggtttttgaattttagatcacgaaaatcgcttgatcgtgatagacgcttgacgtaaatcaaagttggaaatatctgtggtgtgtcacacatatatgttgttgcgtttgggcgtaacaagtttccaacgataggaataccacttaaaatggcaggcttggtgattttaatggactacgggaaccggtttatttggtcatgtatatattgatagtagggtgaaacctcaccgtagtacgtcggagaccccgtgt--TA-ACG-GTCCC-T--G-C-ATGGGAAT-GGATGG---A-C--G---AAAAAACAAAAGAAA-T----CAT---GG-----------------
gi|20 : C--AAAAGATAT-CAC-CGAA-TCAGG-TTAGGCCTTATC------ATCATTGaatccaggaaa
gi|9 : -------TTA-A--TGTTTC-TTCTTTACAGGAGTGA-TTCA--------AC-AT--ATA----A-------TCTTTTGTC--AGTCTTGAATGTGTTGATTTTCT-----T--G---TGTT--AAA----------------AGCA-----ACTAAAATGGGGGGTA--CA--GT--ATGTATTTCAATAT--ACACACT-TCAGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-CATTACA-GGTGAAA-G-AATG-CTACA--AATATC-----AT-AT--A--TT--G-----TAC--ttgatttt
gi|17 : tgTGATAAATCACTACAGGGTGAAA-G-AACG-TTAC---GATATCGTGTAAT-AT--ggcacaatccaaattacaatc
gi|3 : taATAAATCACTA--GGGTGAAC-TTAACG-TTACG--AATATCGTGTAATCATTCAGCTT--GATCCCCAC---TGAT-----AACTG-CAC-----TT---TTTTGATTATCAATTCAA--GCGGCAATTT--GACAATATT--TTGT-GCCTCCTCCCCCTCCCCTACGGTTTTTTTTTTTCAATTGAGTAAGCAAGC----------TA--GTTATATAAAGTGTCAG-------GAAT-TGCAGGTTACTAGAA-TTATGAAT-GAAT-CCCTG-CATTCAAG-CCCGCGCCCACCCCTT-TTAAAGCATAATTTTTAGCAAACAACGATTTTACT-ATAT-A-GCCCCCCCGCCCtcagcttgatccccactgtaactgcaactttttattatcaattcaacgcaattt
gi|1 : AG-CACTACAGG-TGAAAAG-AATG-CTACC--AATATC------T-AT--A--TT--G-----TAC--AT--T-----CACAA-C-CAAAATTTCAATCTTAAT-AATAATGCGAAGGT----ATTT-CAA-AATATTATTTGT-GCC------CCCTT---T---------TTTTTTTA------TAAATTGAAGTTAACAAATTAATG-------------CAGCAATGCAGA-TGTT-GGGTTA-TAGAAATTATAAATTGAAAACCATGGCATCAAGGACTCAC--CCACCCCATATTAAGA---AATTTTGAG---ACAATGA-TGCACTAATAACATACCCCCCCCC----AT-------TTTTTTG--------TATATGTATATCCAATATATTATT----------TGAAATTAAGATTTAAAAATTG--TC-ATC-TAAAACCTTTTT--TAGTAAGTTA-AGGGATCACTTTCATCCCAA-CACATTCCTTTAACATTTCATTTTTGTGACA------GAAAGAAGAGGAG---TGA-AATATGGAGCG--GAAA-CC-GCTTTTG-TGTCAAGGGTGGCAATATTAAAATCAGTACTTACC-AGGAATCTGACAGGTCCGAGTGAGAAAAGACTCAATC-AGACTGCACA-T--G-ACC-AAAATATGACAT-CCGCCCGTTGTCAACTCTTAAACGTTTATT-ATAGA-TT---GATTACA-----TTATCCAAAGG---CAT--TGTG-ACATATGTCTT--GTTATT--AAATTCCCTTA-A--ATGTATACACTGTA---ATGT----TGTTATA--TT--ATA--CA---ACATTAGCTTTG--GTT---TTATTA-------------------------------TAAATCAC-A-ACTT---TGAAATTTTTGAAAATTCAT-------ATCAATT-ATT--TAAAAAGTAAAA----AACATGTGCAG-GCAA--AATTTATAGGCATA----TATTGT-TCATGGGCCT-GTTGT-TTGGCCAAGT-GA---ACTG--AATTTTCATTTATA-GCCTATAACGACCTACTGTATTTATAACAATAAAAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTTAATTAATCATGTTAGTA-GTGGGAAGTTACATACGATACATCATCAAAATCATTTA-AA--TTA--------GTCTATCAAAA-A-GTCACTGATGACAAAGTATATGAAGA-TTCA-AT-TCATA---------AAACT-GAAGAAATTCTccccgcgcctacttgcagattattattggataagatatagcatttggttcaatgctaaaagctttttagaattttcaactaaacaaattcgtctaacaattcctttttctgagacagattgaaagaaaagatgataatattgaagctgataccctgtttttgatttcaagggtggcaatagtagtatcaactttccgaggaatgacagagccagcgagaggtcaatcaagatgcacagctggtaccgaaaacttggcatgcggtcctcgtcaactcataacgttattcatataattatggatacaattatttcgaaaggtcccataccatacatatgtctttgattattaagattctttcagcatgcatgcaacattagctttgttttaacttatataaaatacagatggaatatgttaaaacaaatatttttcattaagaccaagtggttagaatagattgaacaacatccttttgcatcaaagcactgcagcgtaatttaaggggtggggttattgttggctctagtcgtattggccaagtagaggtactcttaattttatttataggcctaaataatacaaaaacaccctaacaaaactaccgttaggtttattatgtttatttatcataagtacatgcaagttacatacaacactcatcacaaacttaatagtcctgtctattaaaaaaggtcactaaagaaataatcacatcatacatgctccatttcacgtagactggaagaattccctttgctcctgccccacactaacattcatatttggaatcgccgcacgtccaatacccgctggaccagcaccagagcaatgatctgtagtagaaaagcggaatttcatagaacaacgacctgaaataatcgtgcattcaa
gi|14 : acaaaaccagctaccgtttccggtttttgaatttttagtcacggtttatgggtgataccgaaaacgcttgatcggatagaccgcttgacgtaaacaaattgtgaatatactcatattacctgtcactgtgactgtcatcttgtgtctgttgtgtacacatcgttgttggtttggggccgttacaagtttccttacaaatcaggaaatacattttttggtgatttaacgggaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaaccccccaaatcatctggagacccgctggttgtgaatgtcattctgttgcctaataatagaccattactaaattaattaccagacaaaattaacggtcccttgcatgggaatggatggacagagaaaaacaaaagaagacaatggaatccaaggaaaaaggaagatctgcatttcacaaaagatatcacataaattcaggttaggccctatcatcatcgatctgttaatgtttccttctttcgaacgtgattcacatatatatggataaattaaatctttttcaatcttgaatgtttgatttgtggtttgtttttaaaagcaactaaaatggggtacatgtatgattattcaatattacacacttcaggtaagagagagagagagacgagaggagagaccgagaggagagaggcagag-CACTACAGGGTGAGA-A-AGTGTCTACAGAAGTATC-----AT-AT--A--TTAGG-----TACCAACG-TTTTTCGACAACCAAAA---TTAAATCTTCAT--ATAATGCAAT-GT----ATTTGCAAAAATATCA-TTGTGGCcctgttgtgcatcttggtctatacttgggaatgcagtattggataaagtggtccaatagttcatcatgtatagaaaagggtaacttcagggaaatctgaaatgagtttgaaagtgcattcaa
gi|3 : TTATTATTGGA-TAAGATATAGCATTTGGTTCAATGCTAAAAGCTTTTTAG-----------------AATTTTCA-ACTAAACAAATTCGTCTAACAATTCCTTTTTCTGAGACAGATTGAAAGAA---AAGA--TGATAATATTGA-AGCTGATACCCTGTTTTTGATTTCAAGGGTGGCAATAGTAGTATC--AACTTTCCGAGGAA--TGACAGAGCC-AGCGAG--AGG--TCAATCAAGA-TGCACAGCTGGTACCGAAAACTTGGCATGCGGTCCT-CGTCAACTCAT-AACG-TTATTCATATAATTATGGA-TACAATTATT--TCGAAAGGTCCCATACCATACAT--ATGTCTTTGATTA-TTAAGATT--CTTTCAGCATGCATGCA------ACATTAGCTTTGTTTTAACTT--AT-ATAAAATACAGATGGAATA-TGTTAAA-----ACAA-ATA------TT-----T--TTC-AT--TAAGAC-C-A-AG-----TG--G-TT---AGAA-T-AGATTGAACAACA------TCCTTTTGCATC-AA----AGCAC-TGCAGCG----TAATTTA-AGGGGTGGGGTTATTGT----TGGCTCTAGTCGTATTGGCCAAGTAGAGGTACTCTTAATTTTA-TTTATAGGCCTA-AATAA--TAC------AAAAACACC-CTAACA---AAACTACCGTTAGGTTTATT--ATGTTT-ATTTATCATA--AGTACATGCA-AGTTACAT---ACA-AC------ACTCA-TCACAAACTTAATAGTCCTGTCTATTAAAAAAGGTCACTAAAGAAATAATCAC-----ATCATACATGCTCCA-TTTCACGTAGACTGGAAG-AATTC
gi|12 : ataaatcactagggtgaacttaacgttacgaatatcgtgtaatcattcagcttgatccccactgataactgcacttttttgattatcaattcaagcggcaatttgacaatattttgtgcctcctccccctcccctacggtttttttttttcaattgagtaagcaagctagttatataaagtgtcaggaattgcaggttactagaattatgaatgaatccctgcattcaagcccgcgcccaccccttttaaagcataatttttagcaaacaacgattttactatatagcccccccgcccccccgcgcctacttgcagaCATTTTTGTGACA------GAAAGAA---GAGGAGTGA-CATATGGAG----------C-G-----AATTCCAAGGATGGCAATATTAAGATCAGTACTTCCC-AGGAATCTGACAGAGCGAAGTGAG--AGGATTCAATCGAGA-TGCACA-CTGG-ACC-AAAcctttgctcctgccccacactaacattcatatttggaatcgccgcacgtccaatacccgctggaccagcaccagagcaatgatctgtagtagaaaagcggaatttcatagaacaacgacctgaaataatcgtgcattcaa
gi|16 : AGAG---GAG---TGA-AATATGGAGTG--GAAACCC-GCCTTTGATGTCAAGGGTGGCAA------------TACTTCCC-AGGAATCTGACAGAGCAGAGTGAG--AAGACTCAATCAAGA-TGCACA-CT
gi|3 : TGCATGCATGC----TGAAAGAATCTTAATAATCAAAGACATATG-TATG
gi|13 : ataaatcactagggtgaacttaacgttacgaatatcgtgtaatcattcagcttgatccccactgataactgcacttttttgattatcaattcaagcggcaatttgacaatattttgtgcctcctccccctcccctacggtttttttttttcaattgagtaagcaagctagttatataaagtgtcaggaattgcaggttactagaattatgaatgaatccctgcattcaagcccgcgcccaccccttttaaagcataatttttagcaaacaacgattttactatatagcccccccgcccccccgcgcctacttgcagattattattggataagatatagcatttggttcaatgctaaaagctttttagaattttcaactaaacaaattcgtctaacaattcctttttctgagacagattgaaagaaaagatgataatattgaagctgataccctgtttttgatttcaagggtggcaatagtagtatcaactttccgaggaatgacagagccagcgagaggtcaatcaagatgcacagctggtaccgaaaacttggcatgcggtcctcgtcaactcataacgttattcatataattatggatacaattatttcgaaaggtcccatacTTAAATTATGA--ACATAGCTTTGTTCAAACTGCTTTTATCATAAATCACTATACTATCATGAAA-TTATGAAAATTCATG-TT--CATCAGATCGTTA-TTCAA-GTCAGACAATGACAT-TGCAGTACAAacattagctttgttttaacttatataaaatacagatggaatatgttaaaacaaatatttttcattaagaccaagtggttagaatagattgaacaacatccttttgcatcaaagcactgcagcgtaatttaaggggtggggttattgttggctctagtcgtattggccaagtagaggtactcttaattttatttataggcctaaataatacaaaaacaccctaacaaaactaccgttaggtttattatgtttatttatcataagtacatgcaagttacatacaacactcatcacaaacttaatagtcctgtctattaaaaaaggtcactaaagaaataatcacatcatacatgctccatttcacgtagactggaagaattccctttgctcctgccccacactaacattcatatttggaatcgccgcacgtccaatacccgctggaccagcaccagagcaatgatctgtagtagaaaagcggaatttcatagaacaacgacctgaaataatcgtgcattcaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): CTCTACTACATAGCCCCCCCCCCCCCCCACACCAATTGAAATTATTTCAGTTGTGGCAAATTAAAGATTTTGTTTTGCAAAATTTAGGAT
Unaligned ( gi|21 ): GGGAGAAATGGACCAGCGAGAGCCCAGTTGGAATG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111
lowQualScore : 1 11111 11111 111 11 1111 2222222222 666666666666666666666666666 111 22222222222222 11111111111 111111 111111111111111111 22222 11111 444444444444444444444444444444444444444444444444444444444444444444444444444 1111 11111 22222222222 555555555555555555555555 2222222 22222222222222 11 111 111 22222222 2222222 444444444 1 222222222222 44444444444444 11111 11 11 11 33333333333 0000000000000000000000000000000000000000000000000000000000000 11 22222 11 66666666666666666666 222222 222 111 1 22222222 333333 22 1 888888888888888 11111111111111111111111111111111111111111111111111111111111 2 22 11 33333 2 3333 333 2 22 1 11 888888888888888888888888888888888888888888888888888888888888888 33 1111 33333333333333333333 33333 11 2222 22222 11 1 1 2 111 2 888888888888888888888888888888888888888 3333 33 1 1 2222222 11 999999999999999999999999999999999999999999999999999999999999999999999999999999999 33333333 1 555555555555555555555 111 2222 1 1111111 44444 22 2 2 444444444444 22 2 2 222222222 11111 1111 2 2 22 111111111111111111111111111111111111111 22 1111 55555555555 1 2 2
lowQualScore : 5 5 5 5 5 888 888 5 888 5 0 5 5 5 5 00000 3 5 33333 5 66 5 5 66 333 5 5 5 66 66 66 5 5 11 2222 5 6666666666 444444444444444444444444444 3 888 5 777 5 99999999999999 44444444444 4 111111 4 888888888888888888 4 00000 0 2 1 7777 11111 4 66 4 4 99 888888888888888888888888888888888888888888888888888888888888888888888888888 6 5555 00000 33333333333 0 3 5 77 1 5 77 555555555555555555555555 7777777 4 77 5 888 1 5 5 77 5 5 5 44444444444444 0 5 5 5 22 1 1 111 2 1 77 0 5 5 5 5 1 000 2 22222222 77 6 1 6 6 6666666 6 6 666666666 6 6 1 7 2 777777777777 99999999999999 2 66666 6 11 11 33 77777777777 2 5555555555555555555555555555555555555555555555555555555555555 7 6 6 6 0 6 11 99999 11 11111111111111111111 444444 777 1 000 0 2 99999999 111111 55 0 1 444444444444444 3 7 11111111111111111111111111111111111111111111111111111111111 3 7 7 44 1 33 1 0 99999 0 1 3 8888 1 777 0 3 1 00 1 9 3 22 111111111111111111111111111111111111111111111111111111111111111 0 7 1 11 1 00 4444 1 88888888888888888888 33333 1 1 0 1 33 1111 55555 8 8 666 8 5 1 5 3 666 8 0 6 11 0 6 8 8 0 0 0 11 3 1 777 1 7 7 3 88 666666666666666666666666666666666666666 7 0 7777 0 00 77 5 0 0 3 6 6666666 11 777777777777777777777777777777777777777777777777777777777777777777777777777777777 33333333 0 000000000000000000000 111 1 2 3 1111 0 8888888 7 0 44444 55 1 3 0 3 555555555555 66 3 7 3 888888888 11111 2222 1 1 1 88 3 1 7 3 11 555555555555555555555555555555555555555 22 1 1 1 0000 00000000000 3 7 3 3
lowQualScore : . . . . . ... ... . ... . . . . . . ..... . . ..... . .. . . .. ... . . . .. .. .. . . .. .... . .......... ........................... . ... . ... . .............. ........... . ...... . .................. . ..... . . . .... ..... . .. . . .. ........................................................................... . .... ..... ........... . . . .. . . .. ........................ ....... . .. . ... . . . .. . . . .............. . . . . .. . . ... . . .. . . . . . . ... . ........ .. . . . . ....... . . ......... . . . . . ............ .............. . ..... . .. .. .. ........... . ............................................................. . . . . . . .. ..... .. .................... ...... ... . ... . . ........ ...... .. . . ............... . . ........................................................... . . . .. . .. . . ..... . . . .... . ... . . . .. . . . .. ............................................................... . . . .. . .. .... . .................... ..... . . . . .. .... ..... . . ... . . . . . ... . . . .. . . . . . . . .. . . ... . . . . .. ....................................... . . .... . .. .. . . . . . ....... .. ................................................................................. ........ . ..................... ... . . . .... . ....... . . ..... .. . . . . ............ .. . . . ......... ..... .... . . . .. . . . . .. ....................................... .. . . . .... ........... . . . .
lowQualScore : 0 0 0 0 0 888 888 0 888 0 0 0 0 0 0 99999 1 0 55555 0 99 0 0 99 888 0 0 0 99 99 99 0 0 99 0000 0 9999999999 444444444444444444444444444 4 888 0 555 0 00000000000000 11111111111 4 111111 4 333333333333333333 4 88888 8 4 8 6666 11111 4 11 4 4 66 555555555555555555555555555555555555555555555555555555555555555555555555555 0 1111 11111 00000000000 1 9 0 99 4 7 99 000000000000000000000000 0000000 3 99 7 999 7 7 7 99 7 7 7 33333333333333 1 7 7 0 99 7 5 777 5 0 99 1 7 7 7 7 7 000 5 11111111 99 7 0 7 7 8888888 7 7 222222222 7 7 8 3 5 777777777777 55555555555555 5 77777 7 00 00 22 55555555555 5 7777777777777777777777777777777777777777777777777777777777777 6 7 7 7 7 7 88 22222 00 66666666666666666666 000000 888 0 888 0 0 88888888 555555 55 0 0 333333333333333 7 3 00000000000000000000000000000000000000000000000000000000000 3 3 3 77 0 33 0 7 00000 7 0 7 0000 0 333 7 7 0 77 0 0 3 33 000000000000000000000000000000000000000000000000000000000000000 7 3 0 77 0 33 0000 0 77777777777777777777 77777 0 0 7 0 88 2222 22222 0 0 888 0 6 0 6 8 666 0 8 4 00 8 4 0 0 8 0 0 77 3 0 000 0 3 3 3 33 000000000000000000000000000000000000000 3 7 0000 7 00 77 0 7 7 3 0 7777777 00 111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222 0 000000000000000000000 000 0 5 2 2222 0 3333333 3 7 33333 77 0 7 7 7 333333333333 00 3 3 3 333333333 00000 0000 0 0 0 33 7 0 3 3 77 777777777777777777777777777777777777777 33 0 0 0 3333 77777777777 3 3 3 7
consensus : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGA----TNACGCGG---CGGTTTATTTGNGTCNTNNATATNNTNATAGGNNA-GTG---ACACCCCCCC--------CCCCCAAATCGTC--GAG-A---CCCGTAGTCGGTTGTGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATA-AT-ATGGATAAATT-A------TTCTTTT-T-CANTCTTGAATGTGTTGATTTC-----T--G---TTTTAAA-----TTTTTAG--GCAGCA-----ACTAAAAT-GGGG--TA--CA-TGTA-ATG-T--AATTCAATATT-ACACACT-TCAGGTANNAGAGAGAGA-GAGACGAGAGGAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAATATCGTGTAATATATT--GTAC--ATG--------T-----NACAACC-GC-AATTA-AATCTTAA-TAAT-AATGCAA--GT----ATTT-C-GACAATATTA-TTG-TGCCCCCTCCCC-----------TTTTTTTTTTTNAATTGAGCAGG-C---GGTTA-A-AAATTAATGTTATATAAAGTGTCAGCAAT-GCAGGAT-TG-GGGTTA-TAGAAATTATGAATTGAAN-CCATGGCATCCAAG-CCC-CGCCCACCCCAT-TTAAGA---AATTTTGAG---ACAACGA-TGCACTA-ATANCATACCC-CCCCCCC-C--GT-------TTTTTTG--------TATATGTACATC-AATA--TATTAT-TTTATTAT-GAATTAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAAG-TA-A-G-ACAACTTTCA-ACC-AACACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAG--G--TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCAT-CCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TACAAT---T--TCCAAAGG---CAT--CGTG-ACATATGTCTTTGATTATT--AAATT--CTTACA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACA-TATG-T-ATG-TGTTA-ATTAT---AA-ATA--TTT--T-TCAT--TAAATCAC-A-A---C-T----TGAAAT-T---T-TGAA-AATTCATAT-TCATCAGAT--CGTT-T-TAAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTAT--A-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GTG-GAAGTTACATACGACAC--CATCAAA-TCATTCA-AAA-TTA--------GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGATC-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
Reference ( family-1663 ) : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-A--TA-CC--GAGA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGA----TGGCGCGG---CGGNTNANNTNNGTCNNNGNNANNGNNGNAGGNNA-GTG---ACACCCCCCC--------CCCCCAAATCGTC--GAG-A---CCCGTAGTTGGTTGTGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-C-ATGGAATCCGGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATA-AT-ATGGATAAATT-A-----NNTCTTTT-T-CATTCTTGAATGTGTTGATTTC-----T--G---TTTTAAA-----TTTTTAG--GCAGCA-----ACTAAAAT-GGGG--TA--CA-TGTA-ATG-T--GNTTCAATATCAACACACTATCAGGCACNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAATATCGTGTAATATATT--GTAC--ATG--------T-----NACAA-C-AC-AATT--AATCTTNA-TAAT-AATGCGA--GT----ATTT-C-GA-AATATTA-TTG-TGCCTCCTCCCCCTCCCCTACGGTTTTTTTTTTTCAATTGAGTAAG-CNGGNGTTA-ACAAATTAATGTTATATAAAGTGTCAGCAAT-GCAGAATGTNCGGGTTACTAGAAATTATGAATTGAANACCNTGGCATCNAGGACCCGCGCCCACCCCNTATTAAGGCATAATTTTNAGCAAACAACGATTNCACTA-ATANCATGCCC-CCCCNCC-C--AT-------TTTTTTG--------TATATGTATATCCAATA--TATTAT-TTTATTATNGGATTAAGATNTAGNANTTGGTTCAATNCTAAAANCTTTTTAGTAGTAAGTTA-AGGGATNACTTTCATNCCAAACANATTCNTCTAACANTTCATTTTTGTGA--CAGA----AAGAAGAG--G--TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATNTCAAGGGTGGCAATATTAANATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAACNTGGCATGCNGCCCNTCGTCAACTCNTAAACGTTTATTCATANAATTATGGATTACAATTATTTATCNAAAGGTCCCATACCGTGCACATATGTCTTTGGTTATTTAAGATTCCCTTNCAGCATGCATGC-ACTGCA-GCATGNTGTTATAACTTATAATCAA-A-ACA-TATG-T-ATG-TGTTAAATTAT---AA-ATA--TTT--T-TCAT--TAAATCAC-A-A---C-T----TGAAA--T---T-TGAA-AATTCATG--TCATCAG----TGTT-T-TNAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTGGGGTTATTGT-TCATGGNCCTAGTCGTATTGGCCAAGTAGAGGTACTNTTAATTTTNATTTATAGGCCTATAACGACCTACTGTATTNANAACANCANNAGCAAGAAAACNANCNTTAGGTTCNTTTTATGTTTAATTNATCATGTTAGTACGTGCGAAGTTACATACGACACACCATCAAANTCATTCACAAACTTAATAGTCCTGTCTATCAAAAAAGGTCACTGANGANANAGTNNNTGAAGATCNCACATGCCNCA-TTTCACGTAGACTGGAAGAAATTCT
gi|1 : AAAC-CA-G-CTA-CCG---T---TT-CCGG---TT-TTTGAATTTTTAG-T-CACGG-TT----TATGGGTG-A--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGACCGC-TTG--ACGT--A--AA-CA-AAT-TG---TGAATATACTCATATTACCTG---TCAC-T-------GT-GACTGT--CATCT---TG-TGTCTG-TTGTGTACACATCGTTGTTGGTTTGGGG----CCGTTA---C--AAGTTT-CCTT--A--C-AAAT----CAGG-AA-ATA-CATTT----T--------------TT-GG--TG-ATTT-AACGGGA----ANNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNA---ACA-----AC--------CCCCCAAATCATCTGGAG-A---CCC---GCTGGTTGTGAATGTCATTC---TGTTGC--C-TAATAA------------------------TAGACCA------TTACTAAATTAAT--TACCAGACAAAAT--TAACG-GTCCCTT--G-C-ATGGGAAT-GGATGG---A-CAGA---GAAAAACAAAAGAAGA-CAATGGAATCCAAGGAAAAAGGAAGATCTGCATTTCAC--AAAAGATAT-CACATAAATTCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATATAT-ATGGATAAATT-A-----AATCTTTT-T-CAATCTTGAATGT-TTGATTTG-----T--G---GTTT--G-----TTTTTAA--A-AGCA-----ACTAAAAT-GGGG--TA--CA-TGT--ATGAT--TATTCAATATT-ACACACT-TCAGGTAAGAGAGAGAGA-GAGACGAGAGGAGAGACCGAGAGGAGAGAGGCAGAGAGCACTACA-GGTGAAAAG-AATG-CTAC-CAATATC------TATATT--GTAC--AT---------T-----CACAACC-AA-AATTTCAATCTTAA-TAAT-AATGCGAAGGT----ATTT-C-AA-AATATTATTTG-TGCCCCCT---------------TTTTTTTTTATAAATTGA----------AGTTA-ACAAATTAATG-------------CAGCAAT-GCAG-ATGTT-GGGTTA-TAGAAATTATAAATTGAAAACCATGGCATCAAGGACT--CACCCACCCCATATTAAGA---AATTTTGAG---ACAATGA-TGCACTA-ATAACATACCC-CCC--CC-C--AT-------TTTTTTG--------TATATGTATATCCAATA--TATTAT-TTGA------AATTAAGATTTAAAAATTG--TCA--TCTAAAACCTTTTT--TAGTAAGTTA-AGGGATCACTTTCATCCC-AACACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAGGAG--TGA-AATAT-GGAGCGGAAA-CC-GCTTTTG-TGTCAAGGGTGGCAATATTAAAATCAGTACTTACC-AGGAATCTGACAGGTCCGAGTGAGAAAAGACTCAATC-AGACTGCACA-T--G-ACC-AAAATATGACAT-CCGCCCGTTGTCAACTCTTAAACGTTTATT-ATAG-ATT---GATTACA-----TTATCCAAAGG---CAT--TGTG-ACATATGTCTT--GTTATT--AAATTCCCTTA-A--ATGTATAC-ACTGTA---ATGTTGTTATA--TTATA--C---A-ACATTAGC-T-TTG--GTT---TTAT-------TA---------------TAAATCAC-A-A---CTT----TGAAATTT---T-TGAA-AATTCATA--TCA--AT----TATT-TAAAAAGTAAAA----AACATGTGCAG-GCAA--AATTTATAGGCATA----TATTGT-TCATGGGCCT-GTTGT-TTGGCCAAGT-GA---ACTG--AATTTTCATTTATA-GCCTATAACGACCTACTGTATTTATAACAATAAAAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTTAATTAATCATGTTAGTA-GTGGGAAGTTACATACGATACATCATCAAAATCATTTA-AA--TTA--------GTCTATCAAAAA--GTCACTGATGACAAAGTATATGAAGAT----------TCA-ATTCATA-AAACT-GAAGAAATTCT
gi|10 : aca-CA-GAC-A-CCG---TGTATT-CCGGCGTTTATT-GATTCTT-AG-T-CACGG-TG----TA-GGG-G-G--TA-CCTGGAGA-A-CGC--TT-ATCG---GAT-CGA-CGCTTTT--AAGT--ACTAA-CATAA--TGGGCTGAG-ATA----------CTG---T----T-------GC-ATGGATACCAC-T---TA-TGAGTG-CTGCCT-----------TCGG-----AG----G-GTCA---CAAAAGTTC-CC-CGGA--CTGAATATCGCAAG-AA-ATTACACTTAAAATGGAGGA-GG-----TT-GG--CA-ATTT-AAT-GTA----Tcctgttgtgcatcttggtctatacttgggaatgcagtattggataaagtggtccaatagttcatcatgtatagaaaagggtaacttcagggaaatctgaaatgagtttgaaagtgcattcaa
gi|11 : cgC-CA-G-C-A-CCG---T---TT-CCGG---TT-TC-AAATTTT-AG-T-CACGG-TT----AATGGG-GTA--TA-CC--GAGA-A-CGC--TTGATCA---GTT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--GG---TGAA-ATA----------CTG---G----TGTGTACAGT-A-------CATAT---TG-C---TG-TTG-GT-----------TT-G-----GA----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-GTA-CACTTGAAATGGA--G-GG-----CT-GG--TG-ATTG-AAT-GGA----T
gi|12 : CATTTTTGTGA--CAGA----AAGAAGAG--GAGTGA-CATAT-GGAGCGAA--------------TTCCAAGGATGGCAATATTAAGATCAGTACTTCCC-AGGAATCTGACAGAGCGAAGTGAG--AGGATTCAATCGAGA-TGCACA-CTGG-ACC-AAAcacaa
gi|13 : --TTT--TATCAT---AAATCACTATA---C-TATCATGAAA--T---TATGAA-AATTCATGT-TCATCAGAT--CGTTAT-TCAAGTCAGACAATGACAT-TGCAGTACAA-
gi|14 : ttaaattatgaacatagctttgttcaaactgcCACTACAGGGTG-AGAA-AGTGTCTACAGAA----GTATCATATATTAGGTACCAACG--------TTTTTCGACAACC-AA-AATTA-AATCTTCA-T-AT-AATGCAAT-GT----ATTTGCAAA-AATATCA-TTG-TG
gi|15 : GG-----GG----C-GTAA---C--AAGTTT-CC-T--A---------------G-AA-AT--CA-------TGGA--A-GG-----CT-GG--TG-ATTA-AAT-GGA----TNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGTG---TAACCCCCCC--------CCCCCgc
gi|16 : cAGAGGAG-----TGA-AATAT-GGAGTGGAAACCC-GCCTTTGATGTCAAGGGTGGCAATA------------CTTCCC-AGGAATCTGACAGAGCAGAGTGAG--AAGACTCAATCAAGA-TGCACA-CTc
gi|17 : TG----ATAAATCACTACAGGGTG-AAAG-AACG-TTAC-G-ATATCGTGTAATAT
gi|19 : ta--TAACG-GTCCC-T--G-C-ATGGGAAT-GGATGG---A-C--G---AAAAAACAAAAGAAAT-C-ATGGAATCCAGGAAAtcagcttgatccccactgtaactgcaactttttattatcaattcaacgcaattt
gi|2 : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-A--TAACC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-A-TT-AAT-GGA----TNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTTA-CTG---ACACCCCCCC--------CCCCCCGATCGTC--GAG-A---CCCGTA--TGG----GAGTG-CATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-A-ATGG--------------G---GATGTGCATTTCAC--AAAAAGTAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGA-C------T-TTAA--TGTTTC-CTTTCTT-CGAACGTGA-TTCAC--A-A-AT-ATTGATAAATT-------TTTCTTTT-T-CA-TCTTGAATGTGTTGATTTC-----T--G---TTTTAAATT---TTTTTAG--GCAGCA-----ACTAAAAT-GGGG--TA--CA-TGTACACG-T--AATT-ATTAT-------TTAT-----ACTAGNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNTTTG----ATAAA-CACTACAGGGTG-AAAG-AATG-CTAC--AATATC----AATATATT--GTAC--ATG--------T-----AACAA-C-AC-GATTA-AATCTTAATTAAT-AATGCAA--GT----ATTT-C-GACAATATT--TTGTTGCCCCCCCCCC-------------TTTTTTTTATAAT--AGCAGGATTGGGGTTATAGAAATTA
gi|2 : AATAGCAGGAT-TG-GGGTTA-TAGAAATTATGAATTGAAC-CCAT-GCATCCAAG---CTCACCCACCCCAT-TTAAGA---AATTTTGAG---ACAATGA-TGCACT--ATATCATACCC-CCCCTCC-CGAATTGTTGTGTTTTTTGTTTTTGTATATATGTACATCAAATATTTATTATGTTTTTTAT-GAAATAAGATTTAAAATTTG--TCAATA-TAAAACCTTTTTAGTAGTAAGGTACATGTACAACTTTCA-ACC-AACACATTCCTTTAACATTTCATTTTTGTGA--AAGA----AAGAAGA---G--TGA-AATAT-GGAGAGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCTGTACTTCCC-AGAAATCTGACAGAGCCAAGTGAG--AGGACTCAATTGAGA-TGCACA-CTGG-ACC-AAAATTTGGCAT-CCGCCCGT-GTCAACTCATAAACGTTTATT-ATAGATTT---GA-TAC-AT------TCCACAGG---CAT--TGTG---ACATGTCTTTGATTAT---AAATT--CTTACATCATGTATAC-ACTGTATACATGATGTAAGAATTTATAATCAAGG-ACA-TATGTT-ATGTTGTTATATTATTACAACATAGGTTTGCT-TTATCATAAATCAC-A-A---C------TGAAAT-T---T-TGAA-AA-TCATATTTCATCAGATGTTGCT-T-TAACGTCAAA----AACAT-TGCAGCACAATTAATTTATAAGCATA----TATTGTGCCATGGGCAT-GTTGT-TTGGCCAAGT-GA---ACTC--AATTT---TTTATA-GCCTATAACGA-CTACTGTAT----AACATTATTTGCAAG-AAACAAACCTTTGGTTCTTTTAATGTGT-ATTAATCATGTTAGTA-GTG-GGAGTTACATA--------TATGTAA-TCATT---AAA-TTA--------GTCTATCAAAACA-GTCGCTGATGACAAAGTCACTGAAGATTTTA-ATATCACATTTTCACGTAGACT-GAAG-AATTCTtgaattgaacccatgcatccaagctcacccaccccatttaagaaattttgagacaatgatgcactatatcataccccccctcccgaattgttgtgttttttgtttttgtatatatgtacatcaaatatttattatgttttttatgaaataagatttaaaatttgtcaatataaaacctttttagtagtaaggtacatgtacaactttcaaccaacacattcctttaacatttcatttttgtgaaagaaagaagagtgaaatatggagaggaaacccgcttttgatttcaagggtggcaatattaaaatctgtacttcccagaaatctgacagagccaagtgagaggactcaattgagatgcacactggaccaaaatttggcatccgcccgtgtcaactcataaacgtttattatagatttgatacattccacaggcattgtgacatgtctttgattataaattcttacatcatgtatacactgtatacatgatgtaagaatttataatcaaggacatatgttatgttgttatattattacaacataggtttgctttatcataaatcacaactgaaattttgaaaatcatatttcatcagatgttgctttaacgtcaaaaacattgcagcacaattaatttataagcatatattgtgccatgggcatgttgtttggccaagtgaactcaattttttatagcctataacgactactgtataacattatttgcaagaaacaaacctttggttcttttaatgtgtattaatcatgttagtagtgggagttacatatatgtaatcattaaattagtctatcaaaacagtcgctgatgacaaagtcactgaagattttaatatcacattttcacgtagactgaagaattctt
gi|20 : acaaaccagcaccgtttccggttttgaattttagtcacggtttatggggataaccgaaaacgcttgatcggatagacgcttgacgtaaacaaatgtgaaatactgttgtacacattgttgttggtttggggcgtaacaagtttcctacaaatcaggaaatcacttaaaatggaaggctggtgattaatggatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggttactgacacccccccccccccgatcgtcgagacccgtatgggagtgcattcgtgttgctactaaatagaccactactataataattacagacaaaattaacggtccctgcatgggaatggatgacagaaaaacaaaagaagtaatggggatgtgcatttcacaaaaagtatcactaaatcaggttaggccctatcatcatcgactttaatgtttcctttcttcgaacgtgattcacaaatattgataaatttttctttttcatcttgaatgtgttgatttctgttttaaatttttttaggcagcaactaaaatggggtacatgtacacgtaattattatttatactagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacactacagggtgaaagaatgctacaatatcaatatattgtacatgtaacaacacgattaaatcttaattaataatgcaagtatttcgacaatattttgttgccccccccccttttttttatC--AAAAGATAT-CAC-CGAA-TCAGG-TTAGGCCTTATC---ATCAT-----------TGTTGA--TTTTt
gi|3 : ----ATAAATCACTA--GGGTG-AACTTAACG-TTAC-GAATATCGTGTAAT-CATT--CAGC--TTGATCCCCACT-----GATAA-CTGC-ACTT----TTTTGA-TTATCAATTCAA--GCGGCAATTT---GACAATATT--TTG-TGCCTCCTCCCCCTCCCCTACGGTTTTTTTTTTTCAATTGAGTAAG-C-----------AAGCTA--GTTATATAAAGTGTCAG--------GAAT-TGCAGGTTACTAGAA-TTATGAAT-GAAT-CCCTG-CATTCAAG-CCCGCGCCCACCCCTT-TTAAAGCATAATTTTTAGCAAACAACGATTTTACTATATAGCCCCCCCGCCCCCCCGC--GC-------CTACTTG--------CAGAT-----------------------TATTATTGGAT-AAGATATAGCATTTGGTTCAATGCTAAAAGCTTTTTAG-----------------AATTTTCA-ACTAAACAAATTCGTCTAACAATTCCTTTTTCTGAGACAGATTGAAAGAAAAG--A--TGATAATATTGAAGCTGATACCCTGTTTTTGATTTCAAGGGTGGCAATAGTAGTATCA--ACTTTCCGAGGAA--TGACAGAGCC-AGCGAG--AGG--TCAATCAAGA-TGCACAGCTGGTACCGAAAACTTGGCATGCGGTCC-TCGTCAACTCAT-AACG-TTATTCATATAATTATGGA-TACAATTATT--TCGAAAGGTCCCATACCAT--ACATATGTCTTTGATTA-TTAAGATT--CTTTCAGCATGCATGCAACATTA-GCTT--TGTTTTAACTTAT-ATAAA-ATACA-GATG-GAATA-TGTTAAA--AC---AA-ATA--TTT--T-TCAT--TAAGAC-C-A-AGTGG-T----TAGAA--TAGAT-TGAACAA---------CATC-------CTT-T-TGCA-TC-AA----AGCAC-TGCAGCG----TAATTTA-AGGGGTGGGGTTATTGT----TGGCTCTAGTCGTATTGGCCAAGTAGAGGTACTCTTAATTTT-ATTTATAGGCCTA-AATAA--TAC------AAAAACACC-CTAAC---AAAACTACCGTTAGGTTTA--TTATGTTT-ATTTATCATA--AGTACATGC-AAGTTACATACAACAC----TCA-------TCACAAACTTAATAGTCCTGTCTATTAAAAAAGGTCACTAAAGAAATAATCAC-----ATCATACATGCTCCA-TTTCACGTAGACTGGAAG-AATTC
gi|4 : CAAACGCAAG-C-AACCGGGTT---TT-CCCG---TT-T--GAATTTT--G-TGCACGG-TT----TATGGG-G-GATTA-CC--GAAA-A-CGCCCTTGATCGAGAGAT-AGA-CGC-TTG--ACGTCAA--GA-CA-AA--TG-----GA-ACA----------CTGGTGTG---T-------GT-A-------CACAT---CG-T---TG-TTG-GT-----------TTGG-----GGG---C-GTAAGACC--AAGTTTTCC-T--GTTC-AAATT---CAGG-AA-TA--CACCTAAA-TGGA--A-AGTAGCCCT-GGGCTGGATTT-AACCGGAACACGGGAACGG---TGGATTATTTGAGTCTGTGATAATGATAGAGGC-A-GTGTGTACACACCCCA--------AATCTAAATCG----GAGGA---CCCATGGTTG--T-TGAATGTC-TTC--GTGTTGCTAA-TA--ANNNNNNNNNNNNNNNNNNNNNNNNNTAGACCC------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---AAC--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGAAAAAGG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCAATC---ATCATCGATCTGATAATGTTAAATTGTTTC-CTTCTTT-CGAACGTGA-TTCACATATA-ATAATGGATAAATTAA-----AATCTTTT-TCCAATCTTG-ATGTGTTGATTTTCTGGGT--G---TTTTAAA----------AA--GCAAAT-----ACTAAAATAGGGG--TATTCATTGT--ATG-TTAAATTCAATATTAcctttgctcctgccccacactaacattcatatttggaatcgccgcacgtccaatacccgctggaccagcaccagagcaatgatctgtagtagaaaagcggaatttcatagaacaacgacctgaaataatcgtgcattcaa
gi|5 : AC-CA-G-C-A-CCG---T---TT-CCGG---TT-TTTGAATTTT-AGAT-CACG----------------------------AAA-ATCGC--TTGATCGT--GAT-AGA-CGC-TTG--ACGT--A--AATCA-AAGTTG----GAA-ATAT---------CTG---TGGTGT-------GTCA-------CACATATATG-T---TG-TTGCGT-----------TTGG-----G-----C-GTAA---C--AAGTTT-CC-A--A--C-GA------TAGG-AATAC--CACTTAAAATGGC--A-GG-----CTTGG--TG-ATTTTAAT-GGA----CTACG-GGAACCGGTTTATTTG-GTCATGTATATATTGATAGTAGG-GTG---AAA----------------CCTCA------------------CCGTAGTACGTCG-GA--GAC-CCC--GTGTT-------------------------------------AGACCAGGGTATCTA--ATAATAAT--TA-CAGACAGATA--TA-CG-GTCCC-TTGA-CTATGGGAAT-GGAT-GTGGA-C--ATGTAAAACACAAAAGAAGTTC-ATGG--------------G---GAT-TGCATTTCACCCAAAAGATATTCAC-TAAA-TCAGG-TTAGGCCCTCTC---ATCATCGATC------TGTATA--CCTTTC-CTT-TTT-CGAACGTGAGTTCAC--TAA-AT-ATGGATAAAGT--------TTTTTCT-T-CATTCTTG-ATGTGTTGATTTC-----T--GGGTTTTTAAAATCCTTTTTTAG--GCGACAGCTATACTAAAAT-GGGG--TA--Ccat
gi|6 : atAAAC-CA-G-C-A-CCG---T---TTTCCGG---TT-TT-GAATTTT-AG-T-CACGGTTT----TATGGG-G-G---A-TC--GAAAGA-CGC--TTGA-CG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---T--A-ATA----------CTG---TTG--T-------GT-A-------CACAT---CGAT---TGTTTG-GT-----------TTGG-----GG----C-GTAA---CA-AAGTTC-GC-T--A----AAAT-----AGG-AA-TA--CAC-TAAAATGGA--AGGG-----CT-GG--TG-ATTT-AAC-GAA----CAACGGAA---CGGTTGAAATTTGTCGTAATAATGATAGTAGGGGT-GTA---ACA------C--------CCCCCAAATCATC--GAG-A---CCCG----TGGTTGTGAATGTCATTTCGGTGTTGCTACGTA--AA------------------------TAGACC-------CTA-TATTATAATTATA-CAGACAAATA--TAATGCGTCCC-T--GCC-ATGGGAATGGGAT-GA--A-C--A---T-AAAACAAAAGAAGT-C-G-GGAATCC-AGGAAAAAG---GATGT-CATTTCAC--AACCG-TAT-CAC-GAAA-TCAGGCTTAGGCCC--TC---ATC
gi|7 : --GAG-AACCCCTGTGGTCC-TTGAAAATGTCATAC--GTGATGCTAT-TA--AA------------------------TAG--CAT-----CTACTATAATACT--TA-CAGAAAAAAAAATATCT-GTTCC-T--G-T-----GAAA-GGAT-GG--A-C--T---GGAAATCAAAAGAAGC-C-ATGGAATCCGGGGGAAAAG---GATGTACATTTCAC--AAAAGACAT-CAA-CGAA-TCAGG-TTAGGCCCTATCCCTATAATC-AT-------TGTTGA--TGTTTTACTTCTTT-CGAATGTGA-TTCAT--AT--CT-ATTGAT--ATT-GTTTTTTTTCTTTT-T-CATTCTTGAATGTTTTATTTTC-----TGGG---TTTTAAAAATC-TTTTCAGGTGCAGCT-----ACTAAAAT-G
gi|8 : tagtaatgatagtaagggtctatacagtaccgatcccttcgtatctgagACATAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTG-AG-T-CACGG-TTGGGGGGGGGG-G-G--TA-CC--GAGA-A-CAC--TTGATTA---GATAAGA-CGC-TTGGAACGT--A--AA-CA-AA--GG---TGAA-ATC----------CTG---G----T-------GT-GTAC----CACTT---TG-T---TG--TG-G-------------TGG-----GGTTACT-GTA-------AAGTTT-TC-CAAA--C-AAAT----CAGGTAA-ATA-CACTTGAAATGGA--G-GG-----TT-GG--TG-ATTT-GAT-GGA----TNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN---NNNNNNNNCCAATCCCTACCCCTGTATCGTCG-GAG-A---CCTGTAGTC-TTTGAGAATGCCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCC------CTACTATGATAAT--TA-CAGACAAAtgttatgttgtattcttgaaattacacagccaggtaatattgattgagagagagagagagagagaga
gi|9 : ------TGTTAA--TGTTTC--TTCTTTACAGGAGTGA-TTCA-------AC-AT--ATAA------------TCTTTTGT-CAGTCTTGAATGTGTTGATTTTCT---T--G---TGTTAAA----------------AGCA-----ACTAAAAT-GGGGGGTA--CA--GTA--TG-T--ATTTCAATAT--ACACACT-TCAGGTANNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNCATTACA-GGTG-AAAG-AATG-CTAC-AAATATC-----ATATATT--GTAC----G--------G-----CACAA-T-CCAAATT--A
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTCTACTACATAGCCCCCCCCCCCCCCCACACCAATTGAAATTATTTCAGTTGTGGCAAATTAAAGATTTTGTTTTGCAAAATTTAGGAT
Unaligned ( gi|21 ): GGGAGAAATGGACCAGCGAGAGCCCAGTTGGAATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11111 11111 111 11 1111 2222222222 666666666666666666666666666 111 22222222222222 11111111111 111111 111111111111111111 22222 11111 44444444444444444444444444444444444444444444444444444444444444444444444444 1111 11111 333333 11 555555555555555555555555 2222222 222222222222 111 111 22222222 2222222 4444444444 222222222222 44444444444444 11111 333 111 111 1 111111 1 1111 1 11 44444 11 66666666666666666666 11 111 1 11 1 2222 11 22 1 3333333333333333333 11 888888888888888888888888888888888888888888888888888888888888 1111 222 1 222 1 222 222 1 22 999999999999999999999999 3333333333 6666666666666 11 1111 8888888888888888888888 1 1 11 2222 22222 11 1 1 1 1 222 1 3333 222 111 1 2 1 4444444 11 99999999999999999999999999999999999999999999999999999999999 111 333333 1 1 22222222222 111 2222 1 1111111 2222 22 1 1 1 222 11 22 1 22 33333 1111 1 1 1 66666666666666666666666666666666666666 1 2222222222222 1 1 1
lowQualScore : 5 5 5 5 5 888 888 5 888 5 0 5 5 5 5 00000 3 5 11111 5 66 5 5 66 333 5 5 5 66 66 66 5 5 11 2222 5 6666666666 444444444444444444444444444 3 888 5 777 5 99999999999999 44444444444 4 111111 4 888888888888888888 4 00000 0 2 1 7777 11111 4 66 4 4 99 11 22222222222222222222222222222222222222222222222222222222222222222222222222 6 5555 00000 777777 44 0 3 5 77 1 5 77 555555555555555555555555 7777777 4 77 5 888 1 5 5 77 5 5 5 5 888888888888 0 5 5 5 6 1 1 111 2 1 77 0 5 5 5 5 1 000 2 22222222 77 6 1 6 6 6666666 6 6 7777777777 6 7 7 2 777777777777 99999999999999 2 66666 6 99 99 88 444 8 777 0 444 0 0 0 3 2 22 666666 8 0 22 7777 5 6 6 0 6 11 6 77777 11 11111111111111111111 3 99 8 33 0 000 0 33 0 1111 22 8 55 0 9999999999999999999 33 7 777777777777777777777777777777777777777777777777777777777777 7 5555 1 999 2 333 3 333 333 0 3 00 1 6 999999999999999999999999 6666666666 4444444444444 88 4444 5555555555555555555555 3 3 33 1111 55555 8 8 666 8 5 0 5 4 666 8 0 6 11 0 6 8 8 0 0 0 2 7 7 3 7 333 3 9999 333 999 6 7 7 7 3 8 6 3 7777777 11 00000000000000000000000000000000000000000000000000000000000 3 111 444444 3 0 9 66 0 2 88888888888 444 2 3 1111 0 8888888 7 0 8888 55 3 0 3 3 333 88 00 3 7 00 7 88888 1 88 2222 7 3 7 3 3 11111111111111111111111111111111111111 7 3 0 7 1111111111111 3 7 6 3 3
lowQualScore : . . . . . ... ... . ... . . . . . . ..... . . ..... . .. . . .. ... . . . .. .. .. . . .. .... . .......... ........................... . ... . ... . .............. ........... . ...... . .................. . ..... . . . .... ..... . .. . . .. .. .......................................................................... . .... ..... ...... .. . . . .. . . .. ........................ ....... . .. . ... . . . .. . . . . ............ . . . . . . . ... . . .. . . . . . . ... . ........ .. . . . . ....... . . .......... . . . . ............ .............. . ..... . .. .. .. ... . ... . ... . . . . . .. ...... . . .. .... . . . . . .. . ..... .. .................... . .. . .. . ... . .. . .... .. . .. . ................... .. . ............................................................ . .... . ... . ... . ... ... . . .. . . ........................ .......... ............. .. .... ...................... . . .. .... ..... . . ... . . . . . ... . . . .. . . . . . . . . . . . . ... . .... ... ... . . . . . . . . ....... .. ........................................................... . ... ...... . . . .. . . ........... ... . . .... . ....... . . .... .. . . . . ... .. .. . . .. . ..... . .. .... . . . . . ...................................... . . . . ............. . . . . .
lowQualScore : 0 0 0 0 0 888 888 0 888 0 0 0 0 0 0 99999 1 0 11111 0 99 0 0 99 888 0 0 0 99 99 99 0 0 99 0000 0 9999999999 444444444444444444444444444 4 888 0 555 0 00000000000000 11111111111 4 111111 4 333333333333333333 4 88888 8 4 8 6666 11111 4 11 4 4 66 11 44444444444444444444444444444444444444444444444444444444444444444444444444 0 1111 11111 000000 66 1 9 0 99 4 7 99 000000000000000000000000 0000000 3 99 7 999 7 7 7 99 7 7 7 7 666666666666 1 7 7 0 6 7 5 777 5 0 99 1 7 7 7 7 7 000 5 11111111 99 7 0 7 7 8888888 7 7 5555555555 7 5 3 5 777777777777 55555555555555 5 77777 7 22 22 88 000 0 000 8 000 8 8 0 2 5 00 222222 0 0 00 0000 4 7 7 7 7 88 7 00000 00 66666666666666666666 2 66 0 66 8 888 0 88 0 2222 55 8 55 0 3333333333333333333 00 3 777777777777777777777777777777777777777777777777777777777777 3 0000 0 333 3 777 3 333 333 7 3 77 0 7 333333333333333333333333 0000000000 0000000000000 33 0000 3333333333333333333333 3 3 88 2222 22222 0 0 888 0 6 6 6 0 666 0 8 4 00 8 4 0 0 8 0 0 0 3 3 3 3 333 3 3333 333 000 7 3 3 3 3 3 7 3 0000000 00 22222222222222222222222222222222222222222222222222222222222 2 000 555555 2 0 8 55 0 5 88888888888 555 5 2 2222 0 3333333 3 7 3333 33 3 7 3 3 333 33 77 3 3 00 3 77777 0 33 0000 3 3 3 3 3 00000000000000000000000000000000000000 3 3 7 3 0000000000000 3 3 7 3 3
consensus : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGATCACG----CGG---CGGTTT--ATTTGAGTCNTNNAT-ATGATGATAG-GGNA-GTG---ACACCCCCCC--------CCCCCAAATCGTC--GAG-A---CCCGTAGT-GGTTGN-GAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATA-AT-ATGGATAAATT----------TTCTTTT-TCANTCTTGAATGTGTTGATTTC-----T--G---TTTTAAA-----TTTTTAG--GCAGCA-----ACTAAAAT-GGGG--TA--CA-TGTA-ATG-T--AATTC---AATATTACACA-CTTCAGGTAATA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATC----AATATATT--GTAC--ATG--------TN-----ACAACCGAAA-TTA-AATCTTAA-TAAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTG-TGCC------CCCTCCCC-----TTTTTTTTTTT-AATTGAGCAGG--------AAATTAG-GTTATA-AAA-TGTCAG-AA-TGCA-GAT-T--GGTTA-TAGAAATTATGAATCG-AANCC-T-GCATCCAGGCCC-CGCCCACCCCAT-TTAAGA---AATTTTGAG---ACAACGA-TGCACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------CGTATACGTACAT-C-GATA--TATTAT-TT-----TGAA-TAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAA-G-TA---G---ACAACTTTCA-ACC-AACACATTCCTTTAACATTTCATTTTTGT--GACA----GAAAGAAGAG--G--TGA-AATA-TGGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TACA----TTTCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTTCA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-CGTTA----ATTACAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTNATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-AAATCATTC-AAATTA--------GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TT-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
Reference ( family-1663 ) : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGATNACG----CGG---CGGTTT--ATTTGNGTCNTNNAT-ATNNTNATAG-GNNA-GTG---ACACCCCCCC--------CCCCCAAATCGTC--GAG-A---CCCGTAGTCGGTTGT-GAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATA-AT-ATGGATAAATT---A------TTCTTTT-TCANTCTTGAATGTGTTGATTTC-----T--G---TTTTAAA-----TTTTTAG--GCAGCA-----ACTAAAAT-GGGG--TA--CA-TGTA-ATG-T--AATTC---AATATTACACA-CTTCAGGTANNA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATCGTGTAATATATT--GTAC--ATG--------TN-----ACAACCGCAA-TTA-AATCTTAA-TAAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTG-TGCC------CCCTCCCC-----TTTTTTTTTTTNAATTGAGCAGGCGGTTAA-AAATTAATGTTATATAAAGTGTCAGCAA-TGCAGGAT-TGGGGTTA-TAGAAATTATGAATTG-AANCCATGGCATCCAAGCCC-CGCCCACCCCAT-TTAAGA---AATTTTGAG---ACAACGA-TGCACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------TGTATATGTACAT-C-AATA--TATTAT-TTTATTATGAATTAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAA-G-TA---A--GACAACTTTCA-ACC-AACACATTCCTTTAACATTTCATTTTTGT--GACA----GAAAGAAGAG--G--TGA-AATA-TGGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TACA---ATTTCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTACA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-TGTTA----ATTATAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTCATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-AAATCATTCAAAATTA--------GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TC-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
gi|1 : AAAC-CA-G-CTA-CCG---T---TT-CCGG---TT-TTTGAATTTTTAG-T-CACGG-TT----TATGGGTG-A--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGACCGC-TTG--ACGT--A--AA-CA-AAT-TG---TGAATATACTCATATTACCTG---TCAC-T-------GT-GACTGT--CATCT---TG-TGTCTG-TTGTGTACACATCGTTGTTGGTTTGGGG----CCGTTA---C--AAGTTT-CCTT--A--C-AAAT----CAGG-AA-ATA-CATTT----T--------------TT-GG--TG-ATTT-AACGGGAANNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNNN-NNA---ACA-----AC--------CCCCCAAATCATCTGGAG-A---CCC---GCTGGTTGT-GAATGTCATTC---TGTTGC--C-TAATAA------------------------TAGACCA------TTACTAAATTAAT--TACCAGACAAAAT--TAACG-GTCCCTT--G-C-ATGGGAAT-GGATGG---A-CAGA---GAAAAACAAAAGAAGA-CAATGGAATCCAAGGAAAAAGGAAGATCTGCATTTCAC--AAAAGATAT-CACATAAATTCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATATAT-ATGGATAAATTA--A------ATCTTTT-TCAATCTTGAATGT-TTGATTTG-----T--G---GTTT--G-----TTTTTAA--A-AGCA-----ACTAAAAT-GGGG--TA--CA-TGT--ATGAT--TATTC---AATATTACACA-CTTCAGGTAAGA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGAGAGAGGCAGAGAGCACTACA-GGTGAAAAG-AATG-CTAC-CAA-TATC------TATATT--GTAC--AT---------TC-----ACAACCAAAATTTC-AATCTTAA-TAAT-AATGCGAAG-GT----ATTT-CAA-AATATTATTTG-TGCC------CCCT---------TTTTTTTTTATAAATTGA------AGTTAACAAATTAATG-------------CAGCAA-TGCA-GATGTTGGGTTA-TAGAAATTATAAATTGAAAACCATGGCATCAAGGACT-CACCCACCCCATATTAAGA---AATTTTGAG---ACAATGA-TGCACTA-ATAACATA--CCCCCCCCC----------ATTTTTT-------TGTATATGTATATCC-AATA--TATTAT-TTGA-----AATTAAGATTTAAAAATTG--TCA--TCTAAAACCTTTTT--TAGTAA-GTTA---AGGGATCACTTTCATCCC-AACACATTCCTTTAACATTTCATTTTTGT--GACA----GAAAGAAGAGGAG--TGA-AATA-TGGAGCGGAAA-CC-GCTTTTG-TGTCAAGGGTGGCAATATTAAAATCAGTACTTACC-AGGAATCTGACAGGTCCGAGTGAGAAAAGACTCAATC-AGACTGCACA-T--G-ACC-AAAATATGACATCCGCCCGTTGTCAACTCTTAAACGTTTATT-ATAG-ATT---GATTACA---TTATCCAAAGG---CAT--TGTGACATATGTCTT--GTTATTAA-ATTCCCTTA-AATGTATAC-ACTGTA---ATGTTGTTATA--TTATA--C---A-ACAT----T-A-G-CTTTG----GTT-T----TA--TT-------A---TAAATCAC-A-ACTT----TGAAATTTTTGAAAATTCATA-TCAATTA---------T-TTAAAAAGTAAAA----AACATGTGCAG-GCAA--AATTTATAGGCATA----TATTGT-TCATGGGCCT-GTTGT-TTGGCCAAGT-GA---ACTG--AATTTTCATTTATA-GCCTATAACGACCTACTGTATTTATAACAATAAAAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTTAATTAATCATGTTAGTA-GTGGGAAGTTACATACGATACAT-CATCAAAATCATTT-AAATTA--------GTCTATC-AAAAA-GTCACTGATGACAAAGTATATGAAGA-TT-CA-AT---TCA-T---A---AAACT-GAAGAAATTCT
gi|10 : aca-CA-GAC-A-CCG---TGTATT-CCGGCGTTTATT-GATTCTT-AG-T-CACGG-TG----TA-GGG-G-G--TA-CCTGGAGA-A-CGC--TT-ATCG---GAT-CGA-CGCTTTT--AAGT--ACTAA-CATAA--TGGGCTGAG-ATA----------CTG---T----T-------GC-ATGGATACCAC-T---TA-TGAGTG-CTGCCT-----------TCGG-----AG----G-GTCA---CAAAAGTTC-CC-CGGA--CTGAATATCGCAAG-AA-ATTACACTTAAAATGGAGGA-GG-----TT-GG--CA-ATTT-AAT-GTATcctgttgtgcatcttggtctatacttgggaatgcagtattggataaagtggtccaatagttcatcatgtatagaaaagggtaacttcagggaaatctgaaatgagtttgaaagtgcattcaa
gi|11 : cgC-CA-G-C-A-CCG---T---TT-CCGG---TT-TC-AAATTTT-AG-T-CACGG-TT----AATGGG-GTA--TA-CC--GAGA-A-CGC--TTGATCA---GTT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--GG---TGAA-ATA----------CTG---G----TGTGTACAGT-A-------CATAT---TG-C---TG-TTG-GT-----------TT-G-----GA----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-GTA-CACTTGAAATGGA--G-GG-----CT-GG--TG-ATTG-AAT-GGATCAC
gi|12 : CATTTTTGT--GACA----GAAAGAAGAG--GAGTGA-CATA-TGGAGCGAA--------------TTCCAAGGATGGCAATATTAAGATCAGTACTTCCC-AGGAATCTGACAGAGCGAAGTGAG--AGGATTCAATCGAGA-TGCACA-CTGG-ACC-AAAaa
gi|13 : --TTT--TATCAT---AAATCACTATAC-TATCATGAAA-TTATGAAAATTCATG-TTCATCAG-A--TCGTTATT--CAAGTCAGACAATGACAT-TGCAGTACAA-
gi|14 : ttaaattatgaacatagctttgttcaaactgcCACTACAGGGTG-AGAA-AGTGTCTACAGAAGTATC-----ATATATTAGGTACCAACG--------TTTTTCGACAACCAAAA-TTA-AATCTTCA-T-AT-AATGC--AATGT----ATTTGCAAAAATATCA-TTG-TG
gi|15 : GG-----GG----C-GTAA---C--AAGTTT-CC-T--A---------------G-AA-AT--CA-------TGGA--A-GG-----CT-GG--TG-ATTA-AAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNTACGTG---TAACCCCCCC--------CCCCCgc
gi|16 : cAGAGGAG-----TGA-AATA-TGGAGTGGAAACCC-GCCTTTGATGTCAAGGGTGGCAATA------------CTTCCC-AGGAATCTGACAGAGCAGAGTGAG--AAGACTCAATCAAGA-TGCACA-CTc
gi|17 : TG----ATAAATCACTACAGGGTG-AAAG-AACG-TTAC-G-A-TATCGTGTAATAT
gi|19 : ta--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-GG--A-C--G---AAAAAACAAAAGAAAT-C-ATGGAATCCAGGAAAtcagcttgatccccactgtaactgcaactttttattatcaattcaacgcaattt
gi|2 : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-A--TAACC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-A-TT-AAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNAG-GTTA-CTG---ACACCCCCCC--------CCCCCCGATCGTC--GAG-A---CCCGTA------TGG-GAGTG-CATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-A-ATGG--------------G---GATGTGCATTTCAC--AAAAAGTAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGA-C------T-TTAA--TGTTTC-CTTTCTT-CGAACGTGA-TTCAC--A-A-AT-ATTGATAAATT---T------TTCTTTT-TCA-TCTTGAATGTGTTGATTTC-----T--G---TTTTAAATT---TTTTTAG--GCAGCA-----ACTAAAAT-GGGG--TA--CA-TGTACACG-T--AAT-------TATTA------TTTA--TACTA--GN--NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNTTTG----ATAAA-CACTACAGGGTG-AAAG-AATG-CTAC--AA-TATC----AATATATT--GTAC--ATG--------TA-----ACAA-CACGA-TTA-AATCTTAATTAAT-AATGC--AA-GT----ATTT-CGACAATATT--TTGTTGCC------CCCCCCCC-----TTTTTTTTAT--AAT--AGCAGG----------ATTGGGGTTATAGAAATTAT-----------GAAT-T----------GAACCCATGCATCC-AAGCT----CACCCA--CCC----------CAT-TTAAGA---AATTTTGAG---ACAATGA-TGCACT--ATATCATACCCCCCCTCCCGAATTGTTGTGTTTTTTGTTTTTGTATATATGTACAT-CAAATATTTATTATGTTTTTTATGAAATAAGATTTAAAATTTG--TCAATA-TAAAACCTTTTTAGTAGTAAGG-TACATG--TACAACTTTCA-ACC-AACACATTCCTTTAACATTTCATTTTTGT--GAAA----GAAAGAAGA---G--TGA-AATA-TGGAGAGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCTGTACTTCCC-AGAAATCTGACAGAGCCAAGTGAG--AGGACTCAATTGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGT-GTCAACTCATAAACGTTTATT-ATAGATTT---GA-TACA-----TTCCACAGG---CAT--TGTGAC--ATGTCTTTGATTA-TAA-ATTCTTACATCATGTATAC-ACTGTATACATGATGTAAGAATTTATAATCAAGG-ACATATGTT-ATGTTGTTATATTATTACAACATAGGTTTGCT-TTATCATAAATCAC-A-AC------TGAAA-TTTTGAAAA-TCATATTTCATCAG-ATGTTGCT-TT--AACGTCAAA----AACAT-TGCAGCACAATTAATTTATAAGCATA----TATTGTGCCATGGGCAT-GTTGT-TTGGCCAAGT-GA---ACTC--AATTT---TTTATA-GCCTATAACGA-CTACTGTA--T--AACATTATTTGCAAG-AAACAAACCTTTGGTTCTTTTAATGTGT-ATTAATCATGTTAGTA-GT-GGGAGTTACATA---------TATG-TAATCATT--AAATTA--------GTCTATCAAAACA-GTCGCTGATGACAAAGTCACTGAAGATTT-TA-ATATCACATTTTCACGTAGACT-GAAG-AATTCT
gi|20 : C--AAAAGATAT-CAC-CGAA-TCAGG-TTAGGCCTTATC---ATCAT-----------TGTTGA--TTTTt
gi|3 : ----ATAAATCACTA--GGGTG-AACTTAACG-TTAC-GAA-TATCGTGTAAT-CATT--CAGC--TTGATCCCCACTG-----ATAACTGCAC-TT----TTTTGA-TTATCAATTC--AA-GCGGCAATTT--GACAATATT--TTG-TGCCTCCTCCCCCTCCCCTACGGTTTTTTTTTTTCAATTGAGTAAGC-------AAGCTA--GTTATATAAAGTGTCAGGAATTGCA--------GGTTACTAG-AATTATGAA-TG-AATCCCT-GCATTCAAGCCCGCGCCCACCCCTT-TTAAAGCATAATTTTTAGCAAACAACGATTTTACTATATAGCCCCCCCGCCCCCCC----------G-------------CGCCTACTTGCA----GAT---TATTAT--------TGGA-TAAGATATAGCATTTGGTTCAATGCTAAAAGCTTTTTAG--------------------AATTTTCA-ACTAAACAAATTCGTCTAACAATTCCTTTTTCTGAGACAGATTGAAAGAAAAG--A--TGATAATATTGAAGCTGATACCCTGTTTTTGATTTCAAGGGTGGCAATAGTAGTATCA--ACTTTCCGAGGAA--TGACAGAGCC-AGCGAG--AGG--TCAATCAAGA-TGCACAGCTGGTACCGAAAACTTGGCATGCGGTCCTCGTCAACTCAT-AACG-TTATTCATATAATTATGGA-TACAATTATTTCGAAAGGTCCCATACCAT-ACATATGTCTTTGATTATTAAGATTCTTTCAGCATGCATGCAACATTA-GC-TT-TGTTTTAACTTAT-ATAAA-ATACAGATG-GAATA-TGTTA----A-AACAA-ATA--TTT--T-TCAT--TAAGAC-C-A-AG-T----GG----TT---AGAAT--AGA-TTGAACAACA--TCCTT-TT--GCA-TC-AA----AGCAC-TGCAGCG----TAATTTA-AGGGGTGGGGTTATTGT----TGGCTCTAGTCGTATTGGCCAAGTAGAGGTACTCTTAATTTT-ATTTATAGGCCTA-AATAA--TAC---A--AA-AACACC-CTAAC---AAAACTACCGTTAGGT--TTATTATGTTT-ATTTATCATA--AGTACAT-GCAAGTTACATACA--ACACTCATC-A-------CAAACTTAATAGTCCTGTCTATTAAAAAAGGTCACTAAAGAAATAATCAC-----A-TCATACATGCTCCA-TTTCACGTAGACTGGAAG-AATTC
gi|4 : CAAACGCAAG-C-AACCGGGTT---TT-CCCG---TT-T--GAATTTT--G-TGCACGG-TT----TATGGG-G-GATTA-CC--GAAA-A-CGCCCTTGATCGAGAGAT-AGA-CGC-TTG--ACGTCAA--GA-CA-AA--TG-----GA-ACA----------CTGGTGTG---T-------GT-A-------CACAT---CG-T---TG-TTG-GT-----------TTGG-----GGG---C-GTAAGACC--AAGTTTTCC-T--GTTC-AAATT---CAGG-AA-TA--CACCTAAA-TGGA--A-AGTAGCCCT-GGGCTGGATTT-AACCGGAACACGGGAACGG---TGGATT--ATTTGAGTCTGTGAT-A--ATGATAGAGGCA-GTGTGTACACACCCCA--------AATCTAAATCG----GAGGA---CCCAT----GGTTGTTGAATGTC-TTC--GTGTTGCTAA-TA--ANNNNNNNNNNNNNNNNNNNNNNNNNTAGACCC------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---AAC--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGAAAAAGG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCAATC---ATCATCGATCTGATAATGTTAAATTGTTTC-CTTCTTT-CGAACGTGA-TTCACATATA-ATAATGGATAAATTAAAA------TCTTTTT-CCAATCTTG-ATGTGTTGATTTTCTGGGT--G---TTTTAAA----------AA--GCAAAT-----ACTAAAATAGGGG--TATTCATTGT--ATG-TTAAATTC---AATATTACAcctttgctcctgccccacactaacattcatatttggaatcgccgcacgtccaatacccgctggaccagcaccagagcaatgatctgtagtagaaaagcggaatttcatagaacaacgacctgaaataatcgtgcattcaa
gi|5 : AC-CA-G-C-A-CCG---T---TT-CCGG---TT-TTTGAATTTT-AGAT-CACG----------------------------AAA-ATCGC--TTGATCGT--GAT-AGA-CGC-TTG--ACGT--A--AATCA-AAGTTG----GAA-ATAT---------CTG---TGGTGT-------GTCA-------CACATATATG-T---TG-TTGCGT-----------TTGG-----G-----C-GTAA---C--AAGTTT-CC-A--A--C-GA------TAGG-AATAC--CACTTAAAATGGC--A-GG-----CTTGG--TG-ATTTTAAT-GGACTACG-----GGAACCGGTTT--ATTTG-GTCATGTAT-ATATTGATAG-TAGG-GTG---AAAC----------------CTCA------------------CCGTAGTACGTCG--GA--GAC-CCC--GTGTT-------------------------------------AGACCAGGGTATCTA--ATAATAAT--TA-CAGACAGATA--TA-CG-GTCCC-TTGA-CTATGGGAAT-GGAT-GTGGA-C--ATGTAAAACACAAAAGAAGTTC-ATGG--------------G---GAT-TGCATTTCACCCAAAAGATATTCAC-TAAA-TCAGG-TTAGGCCCTCTC---ATCATCGATC------TGTATA--CCTTTC-CTT-TTT-CGAACGTGAGTTCAC--TAA-AT-ATGGATAAAGT----------TTTTTCT-TCATTCTTG-ATGTGTTGATTTC-----T--GGGTTTTTAAAATCCTTTTTTAG--GCGACAGCTATACTAAAAT-GGGG--TA--Ct
gi|6 : atAAAC-CA-G-C-A-CCG---T---TTTCCGG---TT-TT-GAATTTT-AG-T-CACGGTTT----TATGGG-G-G---A-TC--GAAAGA-CGC--TTGA-CG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---T--A-ATA----------CTG---TTG--T-------GT-A-------CACAT---CGAT---TGTTTG-GT-----------TTGG-----GG----C-GTAA---CA-AAGTTC-GC-T--A----AAAT-----AGG-AA-TA--CAC-TAAAATGGA--AGGG-----CT-GG--TG-ATTT-AAC-GAACAACG----GAA---CGGTTGAAATTT--GTCGT-AATAATGATAGTAG-GGGT-GTA---ACA------C--------CCCCCAAATCATC--GAG-A---CCCGT----GGTTGT-GAATGTCATTTCGGTGTTGCTACGTA--AA------------------------TAGACC-------CTA-TATTATAATTATA-CAGACAAATA--TAATGCGTCCC-T--GCC-ATGGGAATGGGAT-GA--A-C--A---T-AAAACAAAAGAAGT-C-G-GGAATCCA-GGAAAAAG---GATGT-CATTTCAC--AACCG-TAT-CAC-GAAA-TCAGGCTTAGGCCC--TC---ATC
gi|7 : --GAG-AACCCCTGTGGTCC-TTGA-AAATGTCATAC--GTGATGCTAT-TA--AA------------------------TAG--CAT-----CTACTATAATACT--TA-CAGAAAAAAAAATATCT-GTTCC-T--G-T-----GAAA-GGAT-GG--A-C--T---GGAAATCAAAAGAAGC-C-ATGGAATCCGGGGGAAAAG---GATGTACATTTCAC--AAAAGACAT-CAA-CGAA-TCAGG-TTAGGCCCTATCCCTATAATC-AT-------TGTTGA--TGTTTTACTTCTTT-CGAATGTGA-TTCAT--AT--CT-ATTGAT--ATT---GTTTTTTTTCTTTT-TCATTCTTGAATGTTTTATTTTC-----TGGG---TTTTAAAAATC-TTTTCAGGTGCAGCT-----ACTAAAAT-GTGT--T----A-TGT---TG-T---ATTCTTGAA-ATTACACAGC--CAGGTAATATTGATTGAGAGAGAGA-GAGAGAGAGAGA
gi|8 : tagtaatgatagtaagggtctatacagtaccgatcccttcgtatctgagACATAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTG-AG-T-CACGG-TTGGGGGGGGGG-G-G--TA-CC--GAGA-A-CAC--TTGATTA---GATAAGA-CGC-TTGGAACGT--A--AA-CA-AA--GG---TGAA-ATC----------CTG---G----T-------GT-GTAC----CACTT---TG-T---TG--TG-G-------------TGG-----GGTTACT-GTA-------AAGTTT-TC-CAAA--C-AAAT----CAGGTAA-ATA-CACTTGAAATGGA--G-GG-----TT-GG--TG-ATTT-GAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNNN-NNN---NNNNNNNNCCAATCCCTACCCCTGTATCGTCG-GAG-A---CCTGTAGTC-TTTGA-GAATGCCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCC------CTACTATGATAAT--TA-CAGACAAA
gi|9 : ------TGTTAA--TGTTTC--TTCTTTACAGGAGTGA-TTCA-------AC-AT--ATAA--------------TCTTTTGTCAGTCTTGAATGTGTTGATTTTCT---T--G---TGTTAAA----------------AGCA-----ACTAAAAT-GGGGGGTA--CA--GTA--TG-T--ATTTC---AATAT-ACACA-CTTCAGGTANNN--NN--NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN----NNNNN-CATTACAGG-TG-AAAG-AATG-CTAC-AAA-TATC-----ATATATT--GTAC----G--------GC-----ACAATCCAAA-TTACAATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTCTACTACATAGCCCCCCCCCCCCCCCACACCAATTGAAATTATTTCAGTTGTGGCAAATTAAAGATTTTGTTTTGCAAAATTTAGGAT
Unaligned ( gi|21 ): GGGAGAAATGGACCAGCGAGAGCCCAGTTGGAATG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 11111 11111 111 11 1111 2222222222 666666666666666666666666666 111 22222222222222 11111111111 111111 111111111111111111 22222 11111 2222222222 11 11111111111 111111 111 222222222222222 11 111 3333333 555555555555555555555555 2222222 222222222222 111 111 22222222 2222222 3333333333333 222222222222222 4444444444444444 11111 11 33 111 111 1 111111 1 1111 11 3333333 11 77777777777777777777777 11 11 1 11 1 2222 11 22 1 7777777777777777 222 9999999999999999999999999999999999999999999999999999 1 1 44444 1111 1 222 222 1 22 0000000000000000000000000 4444444444 5555555555555555 11 1111 88888888888888888888888 1 1 11 2222 22222 11 1 1 1 1 222 1 33333333 222 111 1 2 1 4444444 11 999999999999999999999999999999999999999999999 22222222222 111 333333 1 1 22222222222 111 2222 1 1111111 2222 22 1 1 1 222 11 22 1 22 33333 1111 1 1 1 4444444444444444 1 33333 1 1111111 2222 1 1 1
lowQualScore : 5 5 5 5 5 888 888 5 888 5 0 5 5 5 5 00000 3 5 11111 5 66 5 5 66 333 5 5 5 66 66 66 5 5 11 2222 5 6666666666 444444444444444444444444444 3 888 5 777 5 99999999999999 44444444444 4 111111 4 888888888888888888 4 00000 0 2 1 7777 11111 4 66 4 66 99 00 6666666666 0 888 00 00000000000 111111 000 111111111111111 1 6 33 5 5 000 0000000 8 3 1 77 1 5 77 555555555555555555555555 7777777 4 77 5 888 1 5 5 77 5 5 5 5 888888888888 0 5 5 5 6 1 1 111 2 1 77 0 5 5 5 5 1 000 2 22222222 77 6 1 6 6 6666666 6 6 2222222222222 6 6 7 7 2 777777777777777 9999999999999999 2 66666 55 99 88 88 8 777 444 5 0 0 3 2 3 666666 8 0 22 7777 7 6 6 6 0 6 11 6 6666666 11 00000000000000000000000 8 1 999 33 0 99 0 33 0 1111 22 8 55 0 0000000000000000 555 9999999999999999999999999999999999999999999999999999 3 7 7 1 66666 0 9999 0 3 333 333 0 3 00 1 6 0000000000000000000000000 0 0000000000 7777777777777777 88 4444 44444444444444444444444 3 3 33 1111 55555 8 8 666 8 5 0 5 4 666 8 0 6 11 0 6 8 8 0 0 0 2 7 7 3 7 333 3 11111111 333 999 6 7 7 7 3 6 3 7777777 11 333333333333333333333333333333333333333333333 11111111111 3 111 444444 3 0 9 66 0 1 88888888888 444 2 3 1111 0 8888888 7 0 8888 55 3 0 3 3 333 88 00 3 7 00 7 88888 1 88 2222 7 3 7 3 3 4444444444444444 7 7 7 33333 7 3 0 7 4444444 0000 3 7 6 3 3
lowQualScore : . . . . . ... ... . ... . . . . . . ..... . . ..... . .. . . .. ... . . . .. .. .. . . .. .... . .......... ........................... . ... . ... . .............. ........... . ...... . .................. . ..... . . . .... ..... . .. . .. .. .. .......... . ... .. ........... ...... ... ............... . . .. . . ... ....... . . . .. . . .. ........................ ....... . .. . ... . . . .. . . . . ............ . . . . . . . ... . . .. . . . . . . ... . ........ .. . . . . ....... . . ............. . . . . . ............... ................ . ..... .. .. .. .. . ... ... . . . . . . ...... . . .. .... . . . . . . .. . ....... .. ....................... . . ... .. . .. . .. . .... .. . .. . ................ ... .................................................... . . . . ..... . .... . . ... ... . . .. . . ......................... . .......... ................ .. .... ....................... . . .. .... ..... . . ... . . . . . ... . . . .. . . . . . . . . . . . . ... . ........ ... ... . . . . . . . ....... .. ............................................. ........... . ... ...... . . . .. . . ........... ... . . .... . ....... . . .... .. . . . . ... .. .. . . .. . ..... . .. .... . . . . . ................ . . . ..... . . . . ....... .... . . . . .
lowQualScore : 0 0 0 0 0 888 888 0 888 0 0 0 0 0 0 99999 1 0 11111 0 99 0 0 99 888 0 0 0 99 99 99 0 0 99 0000 0 9999999999 444444444444444444444444444 4 888 0 555 0 00000000000000 11111111111 4 111111 4 333333333333333333 4 88888 8 4 8 6666 11111 4 11 4 44 66 77 3333333333 4 000 66 99999999999 000000 000 666666666666666 5 7 66 7 7 000 0000000 6 6 4 99 4 7 99 000000000000000000000000 0000000 3 99 7 999 7 7 7 99 7 7 7 7 666666666666 1 7 7 0 6 7 5 777 5 0 99 1 7 7 7 7 7 000 5 11111111 99 7 0 7 7 8888888 7 7 8888888888888 7 7 5 3 5 222222222222222 5555555555555555 5 77777 88 22 88 22 0 000 000 6 8 0 2 5 2 222222 0 0 00 0000 6 7 7 7 7 7 88 7 3333333 00 44444444444444444444444 0 4 444 66 8 88 0 88 0 2222 55 8 55 0 0000000000000000 333 7777777777777777777777777777777777777777777777777777 3 3 3 0 00000 7 0000 7 3 333 333 7 3 77 0 7 0000000000000000000000000 7 7777777777 0000000000000000 33 0000 77777777777777777777777 3 3 88 2222 22222 0 0 888 0 6 6 6 0 666 0 8 4 00 8 4 0 0 8 0 0 0 3 3 3 3 333 3 00000000 333 000 7 3 3 3 3 7 3 0000000 00 444444444444444444444444444444444444444444444 55555555555 2 000 555555 2 0 8 55 0 0 88888888888 555 5 2 2222 0 3333333 3 7 3333 33 3 7 3 3 333 33 77 3 3 00 3 77777 0 33 0000 3 3 3 3 3 0000000000000000 3 3 3 33333 3 3 7 3 0000000 3333 3 3 7 3 3
consensus : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGATCACG----CGG---CGGTTT--ATTTGAGTCNTNNAT-ATGATGATAG-GGNA-GTG---ACACCCCCCC--------CCCCCGAAT-CGTC--G-AG-A---CCCGTGGTCGTTGNGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATA-AT-ATGGATA-----AATT----TT-CTTTT-TCANTCTTGAATGTGTTGATTT--C-----T--G---TTTTAAA-----TTTTT--AG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGT--ATG-T--AATTC---AATATTACACA-CTTCAGGTAATA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATC----A-ATATATT--GTAC--A---TG--------TN-----ACAAC-CGAAA-TTA-AATCTTAAT-AAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTGT-GCCCCCTCCCC------------TTTTTTTTT-T-AATT-AGCAGG-AAGTTAG----ACAA---AGTG-CAG-GA--TGCAG-------GTTA-TAGAAATTATGAATTGAANCC-C---GCATCCAAG-CT-CGCCCACCCCAT-TTAAGA---AATTTTGAG---ACAACGATGC-ACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------CGTATACGTACAT-C-GATA--TATTAT-TTT------GAA--TAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAAG-----T----G-ACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAG--G--TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TAC----ATT-TCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTTCA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-CGTTA----AT-ACAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTNATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-A-AATCATTTAAATTA-----GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TT-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
Reference ( family-1663 ) : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGATCACG----CGG---CGGTTT--ATTTGAGTCNTNNAT-ATGATGATAG-GGNA-GTG---ACACCCCCCC--------CCCCCAAAT-CGTC--G-AG-A---CCCGTAGTGGTTGNGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATA-AT-ATGGATA-----AATT----TT-CTTTT-TCANTCTTGAATGTGTTGATTT--C-----T--G---TTTTAAA-----TTTTT--AG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTA-ATG-T--AATTC---AATATTACACA-CTTCAGGTAATA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATC----A-ATATATT--GTAC--A---TG--------TN-----ACAAC-CGAAA-TTA-AATCTTAAT-AAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTGT-GCCCCCTCCCC------------TTTTTTTTT-TTAATTGAGCAGG-AAATTAGGT-TATAA---AATGTCAG-AA--TGCAGAT-T--GGTTA-TAGAAATTATGAATCGAANCC-T---GCATCCAGGCCC-CGCCCACCCCAT-TTAAGA---AATTTTGAG---ACAACGATGC-ACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------CGTATACGTACAT-C-GATA--TATTAT-TTT------GAA--TAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAAG-----T----AGACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAG--G--TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TAC----ATT-TCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTTCA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-CGTTA----ATTACAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTNATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-A-AATCATTCAAATTA-----GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TT-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
gi|1 : AAAC-CA-G-CTA-CCG---T---TT-CCGG---TT-TTTGAATTTTTAG-T-CACGG-TT----TATGGGTG-A--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGACCGC-TTG--ACGT--A--AA-CA-AAT-TG---TGAATATACTCATATTACCTG---TCAC-T-------GT-GACTGT--CATCT---TG-TGTCTG-TTGTGTACACATCGTTGTTGGTTTGGGG----CCGTTA---C--AAGTTT-CCTT--A--C-AAAT----CAGG-AA-ATA-CATTT----T--------------TT-GG--TG-ATTT-AACGGGAANNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNNN-NNA---ACA-----AC--------CCCCCAAAT-CATCTGG-AG-A---CCCGC--TGGTTGTGAATGTCATTC---TGTTGC--C-TAATAA------------------------TAGACCA------TTACTAAATTAAT--TACCAGACAAAAT--TAACG-GTCCCTT--G-C-ATGGGAAT-GGATGG---A-CAGA---GAAAAACAAAAGAAGA-CAATGGAATCCAAGGAAAAAGGAAGATCTGCATTTCAC--AAAAGATAT-CACATAAATTCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATATAT-ATGGATA-----AATTAA--AT-CTTTT-TCAATCTTGAATGT-TTGATTT--G-----T--G---GTTT--G-----TTTTT--AA--A-AGCA-----ACTAAAAT--GGGGTA--CA-TGT--ATGAT--TATTC---AATATTACACA-CTTCAGGTAAGA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGAGAGAGGCAGAGAGCACTACA-GGTGAAAAG-AATG-CTAC-CAA-TATC-------TATATT--GTAC--A---T---------TC-----ACAAC-CAAAATTTC-AATCTTAAT-AAT-AATGCGAAG-GT----ATTT-CAA-AATATTATTTGT-GCCCCCT----------------TTTTTTTTTATAAATT------G-AAGTTA-----ACAAATTAATG-CAGCAA--TGCAGATGTTGGGTTA-TAGAAATTATAAATTGAAAAC-CATGGCATCAAGGACT-CACCCACCCCATATTAAGA---AATTTTGAG---ACAATGATGC-ACTA-ATAACATA--CCCCCCCCC----------ATTTTTT-------TGTATATGTATATCC-AATA--TATTA--TTT------GAAATTAAGATTTAAAAATTG--TCA--TCTAAAACCTTTTT--TAGTAAG-----TTAAGGGATCACTTTCATCCCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAGGAG--TGA-AATAT-GGAGCGGAAA-CC-GCTTTTG-TGTCAAGGGTGGCAATATTAAAATCAGTACTTACC-AGGAATCTGACAGGTCCGAGTGAGAAAAGACTCAATC-AGACTGCACA-T--G-ACC-AAAATATGACATCCGCCCGTTGTCAACTCTTAAACGTTTATT-ATAG-ATT---GATTAC----ATTATCCAAAGG---CAT--TGTGACATATGTCTT--GTTATTAA-ATTCCCTTA-AATGTATAC-ACTGTA---ATGTTGTTATA--TTATA--C---A-ACAT----T-A-G-CTTTG----GT-----------TTT--A-TTA---TAAATCAC-A-ACTT----TGAAATTTTTGAAAATTCATA-TCAATTA---------T-TTAAAAAGTAAAA----AACATGTGCAG-GCAA--AATTTATAGGCATA----TATTGT-TCATGGGCCT-GTTGT-TTGGCCAAGT-GA---ACTG--AATTTTCATTTATA-GCCTATAACGACCTACTGTATTTATAACAATAAAAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTTAATTAATCATGTTAGTA-GTGGGAAGTTACATACGATACAT-CATCAA-AATCATTTAAATTA-----GTCTATC-AAAAA-GTCACTGATGACAAAGTATATGAAGA-TT-CA-AT---TCA-T---A---AAACT-GAAGAAATTCT
gi|10 : aca-CA-GAC-A-CCG---TGTATT-CCGGCGTTTATT-GATTCTT-AG-T-CACGG-TG----TA-GGG-G-G--TA-CCTGGAGA-A-CGC--TT-ATCG---GAT-CGA-CGCTTTT--AAGT--ACTAA-CATAA--TGGGCTGAG-ATA----------CTG---T----T-------GC-ATGGATACCAC-T---TA-TGAGTG-CTGCCT-----------TCGG-----AG----G-GTCA---CAAAAGTTC-CC-CGGA--CTGAATATCGCAAG-AA-ATTACACTTAAAATGGAGGA-GG-----TT-GG--CA-ATTT-AAT-GTATcctgttgtgcatcttggtctatacttgggaatgcagtattggataaagtggtccaatagttcatcatgtatagaaaagggtaacttcagggaaatctgaaatgagtttgaaagtgcattcaa
gi|11 : cgC-CA-G-C-A-CCG---T---TT-CCGG---TT-TC-AAATTTT-AG-T-CACGG-TT----AATGGG-GTA--TA-CC--GAGA-A-CGC--TTGATCA---GTT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--GG---TGAA-ATA----------CTG---G----TGTGTACAGT-A-------CATAT---TG-C---TG-TTG-GT-----------TT-G-----GA----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-GTA-CACTTGAAATGGA--G-GG-----CT-GG--TG-ATTG-AAT-GGATCAC
gi|12 : CATTTTTGTGA--CAGA----AAGAAGAG--GAGTGA-CATAT-GGAGCGAA--------------TTCCAAGGATGGCAATATTAAGATCAGTACTTCCC-AGGAATCTGACAGAGCGAAGTGAG--AGGATTCAATCGAGA-TGCACA-CTGG-ACC-AAAaa
gi|13 : --TTT--TATCAT---AAATCACTATAC-TATCATGAAA-TTATGAAAATTCATG-TTCATCAG-A--TCGTTATT--CAAGTCAGACAATGACAT-TGCAGTACAA-
gi|14 : ttaaattatgaacatagctttgttcaaactgcCACTACAGGGTG-AGAA-AGTGTCTACAGAAGTATC----A--TATATTAGGTACCAA---CG--------TTTTTCGACAAC-CAAAA-TTA-AATCTTCAT--AT-AATGC--AATGT----ATTTGCAAAAATATCA-TTGT-G
gi|15 : GG-----GG----C-GTAA---C--AAGTTT-CC-T--A---------------G-AA-AT--CA-------TGGA--A-GG-----CT-GG--TG-ATTA-AAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNTACGTG---TAACCCCCCC--------CCCCCgc
gi|16 : cAGAGGAG-----TGA-AATAT-GGAGTGGAAACCC-GCCTTTGATGTCAAGGGTGGCAATA------------CTTCCC-AGGAATCTGACAGAGCAGAGTGAG--AAGACTCAATCAAGA-TGCACA-CTc
gi|17 : TG----ATAAATCACTACAGGGTG-AAAG-AACG-TTAC-G-A-TATCGTGTA-ATAT
gi|19 : ta--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-GG--A-C--G---AAAAAACAAAAGAAAT-C-ATGGAATCCAGGAAAtcagcttgatccccactgtaactgcaactttttattatcaattcaacgcaattt
gi|2 : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-A--TAACC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATT--AAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNAG-GTTA-CTG---ACACCCCCCC--------CCCCCCGAT-CGTC--G-AG-A---CCCGTA-----TGGGAGTG-CATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-A-ATGG--------------G---GATGTGCATTTCAC--AAAAAGTAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGA-C------T-TTAA--TGTTTC-CTTTCTT-CGAACGTGA-TTCAC--A-A-AT-ATTGATA-----AATT----TTTCTTTT-TCA-TCTTGAATGTGTTGATTT--C-----T--G---TTTTAAA-----TTTTTTTAG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTACACG-T--AATT-------ATTA------TTTA--TACTA--GN--NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNTTTG----ATAAA-CACTACAGGGTG-AAAG-AATG-CTAC--AA-TATC----A-ATATATT--GTAC--A---TG--------TA-----ACAACACGA---TTA-AATCTTAATTAAT-AATGC--AA-GT----ATTT-CGACAATATT--TTGTTGCCCCCCCCCC------------TTTTTTTTA-T-AAT--AGCAGG---ATTGGG-----------------------------------GTTA-TAGAAATTATGAATTGAACCCAT---GCATCCAAG-CT-CACCCACCCCAT-TTAAGA---AATTTTGAG---ACAATGATGC-ACT--ATATCATACCCCCCCTCCCGAATTGTTGTGTTTTTTGTTTTTGTATATATGTACAT-CAAATATTTATTATGTTTTTTATGAAA--TAAGATTTAAAATTTG--TCAATA-TAAAACCTTTTTAGTAGTAAGGTACAT----GTACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--AAGA----AAGAAGA---G--TGA-AATAT-GGAGAGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCTGTACTTCCC-AGAAATCTGACAGAGCCAAGTGAG--AGGACTCAATTGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGT-GTCAACTCATAAACGTTTATT-ATAGATTT---GA-TAC----A-T-TCCACAGG---CAT--TGTGAC--ATGTCTTTGATTA-TAA-ATTCTTACATCATGTATAC-ACTGTATACATGATGTAAGAATTTATAATCAAGG-ACATATGTT-ATGTTGTTATATTATTACAACATAGGTTTGCT-TTATCATAAATCAC-A-AC------TGAAA-TTTTGAAAA-TCATATTTCATCAG-ATGTTGCT-TT--AACGTCAAA----AACAT-TGCAGCACAATTAATTTATAAGCATA----TATTGTGCCATGGGCAT-GTTGT-TTGGCCAAGT-GA---ACTC--AATTT---TTTATA-GCCTATAACGA-CTACTGTA--T--AACATTATTTGCAAG-AAACAAACCTTTGGTTCTTTTAATGTGT-ATTAATCATGTTAGTA-GT-GGGAGTTACATA---------TATG-T-AATCATT-AAATTA-----GTCTATCAAAACA-GTCGCTGATGACAAAGTCACTGAAGATTT-TA-ATATCACATTTTCACGTAGACT-GAAG-AATTCT
gi|20 : C--AAAAGATAT-CAC-CGAA-TCAGG-TTAGGCCTTATC---ATCAT-----------TGTTGA--TTTTt
gi|3 : ----ATAAATCACTA--GGGTG-AACTTAACG-TTAC-GAA-TATC----GTGTA-ATC--ATTC--AGCTTGATCCCCACTG-----ATAAC-TGCAC-TT----TTTTGAT-TATCAATTC--AA-GCGGCAATTT--GACAATATT--TTGT-GCCTCCTCCCCCTCCCCTACGGTTTTTTTTTT-TCAATTGAGTAAGCAAGCTAGTTATATAA---AGTGTCAG-GAATTGCAG-------GTTACTAGAA-TTATGAAT-GAATCCCT---GCATTCAAGCCCGCGCCCACCCCTT-TTAAAGCATAATTTTTAGCAAACAACGATTTTACTATATAGCCCCCCCGCCCCCCC----------G-------------CGCCTACTTGCA----GAT---TATTAT-T--------GGA--TAAGATATAGCATTTGGTTCAATGCTAAAAGCTTTTTAG---------------------AATTTTCA-ACTAAACAAATTCGTCTAACAATTCCTTTTTCTGAGACAGATTGAAAGAAAAG--A--TGATAATATTGAAGCTGATACCCTGTTTTTGATTTCAAGGGTGGCAATAGTAGTATCA--ACTTTCCGAGGAA--TGACAGAGCC-AGCGAG--AGG--TCAATCAAGA-TGCACAGCTGGTACCGAAAACTTGGCATGCGGTCCTCGTCAACTCAT-AACG-TTATTCATATAATTATGGA-TACAATTATT-TCGAAAGGTCCCATACCAT-ACATATGTCTTTGATTATTAAGATTCTTTCAGCATGCATGCAACATTA-GC-TT-TGTTTTAACTTAT-ATAAA-ATACAGATG-GAATA-TGTTA----A-AACAA-ATA--TTT--T-TCAT--TAAGAC-C-A-AG-T----GG----TT---AGAAT--AGA-TTGAACAACA--TCCTT-TT--GCA-TC-AA----AGCAC-TGCAGCG----TAATTTA-AGGGGTGGGGTTATTGT----TGGCTCTAGTCGTATTGGCCAAGTAGAGGTACTCTTAATTTT-ATTTATAGGCCTA-AATAA--TAC---A--AA-AACACC-CTAAC---AAAACTACCGTTAGGT--TTATTATGTTT-ATTTATCATA--AGTACAT-GCAAGTTACATACA--ACACTCATC-ACAA--ACTTAA--TAGTCCTGTCTATTAAAAAAGGTCACTAAAGAAATAATCAC-----A-TCATACATGCTCCA-TTTCACGTAGACTGGAAG-AATTC
gi|4 : CAAACGCAAG-C-AACCGGGTT---TT-CCCG---TT-T--GAATTTT--G-TGCACGG-TT----TATGGG-G-GATTA-CC--GAAA-A-CGCCCTTGATCGAGAGAT-AGA-CGC-TTG--ACGTCAA--GA-CA-AA--TG-----GA-ACA----------CTGGTGTG---T-------GT-A-------CACAT---CG-T---TG-TTG-GT-----------TTGG-----GGG---C-GTAAGACC--AAGTTTTCC-T--GTTC-AAATT---CAGG-AA-TA--CACCTAAA-TGGA--A-AGTAGCCCT-GGGCTGGATTT-AACCGGAACACGGGAACGG---TGGATT--ATTTGAGTCTGTGAT-A--ATGATAGAGGCA-GTGTGTACACACCCCA--------AATCTAAAT-CG----G-AGGA---CCCATGGTTGTTG--AATGTC-TTC--GTGTTGCTAA-TA--ANNNNNNNNNNNNNNNNNNNNNNNNNTAGACCC------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---AAC--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGAAAAAGG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCAATC---ATCATCGATCTGATAATGTTAAATTGTTTC-CTTCTTT-CGAACGTGA-TTCACATATA-ATAATGGATA-----AATTAAAATC-TTTTT-CCAATCTTG-ATGTGTTGATTT--TCTGGGT--G---TTTTAAA------------AA--GCAAAT-----ACTAAAATA-GGGGTATTCATTGT--ATG-TTAAATTC---AATATTACAcctttgctcctgccccacactaacattcatatttggaatcgccgcacgtccaatacccgctggaccagcaccagagcaatgatctgtagtagaaaagcggaatttcatagaacaacgacctgaaataatcgtgcattcaa
gi|5 : AC-CA-G-C-A-CCG---T---TT-CCGG---TT-TTTGAATTTT-AGAT-CACG----------------------------AAA-ATCGC--TTGATCGT--GAT-AGA-CGC-TTG--ACGT--A--AATCA-AAGTTG----GAA-ATAT---------CTG---TGGTGT-------GTCA-------CACATATATG-T---TG-TTGCGT-----------TTGG-----G-----C-GTAA---C--AAGTTT-CC-A--A--C-GA------TAGG-AATAC--CACTTAAAATGGC--A-GG-----CTTGG--TG-ATTTTAAT-GGACTACG-----GGAACCGGTTT--ATTTG-GTCATGTAT-ATATTGATAG-TAGG-GTG---AAACCTCACC--------GT----AGTACGTC--GGAG-A---CCC---------------------C--GTGTT-------------------------------------AGACCAGGGTATCTA--ATAATAAT--TA-CAGACAGATA--TA-CG-GTCCC-TTGA-CTATGGGAAT-GGAT-GTGGA-C--ATGTAAAACACAAAAGAAGTTC-ATGG--------------G---GAT-TGCATTTCACCCAAAAGATATTCAC-TAAA-TCAGG-TTAGGCCCTCTC---ATCATCGATC------TGTATA--CCTTTC-CTT-TTT-CGAACGTGAGTTCAC--TAA-AT-ATGGATA-----AAGT----TT-TTTCT-TCATTCTTG-ATGTGTTGATTT--C-----T--GGGTTTTTAAAATCCTTTTTT--AG--GCGACAGCTATACTAAAAT--GGGGTA--Ct
gi|6 : atAAAC-CA-G-C-A-CCG---T---TTTCCGG---TT-TT-GAATTTT-AG-T-CACGGTTT----TATGGG-G-G---A-TC--GAAAGA-CGC--TTGA-CG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---T--A-ATA----------CTG---TTG--T-------GT-A-------CACAT---CGAT---TGTTTG-GT-----------TTGG-----GG----C-GTAA---CA-AAGTTC-GC-T--A----AAAT-----AGG-AA-TA--CAC-TAAAATGGA--AGGG-----CT-GG--TG-ATTT-AAC-GAACAACG----GAA---CGGTTGAAATTT--GTCGT-AATAATGATAGTAG-GGGT-GTA---ACA------C--------CCCCCAAAT-CATC--G-AG-A---CCC---GTGGTTGTGAATGTCATTTCGGTGTTGCTACGTA--AA------------------------TAGACC-------CTA-TATTATAATTATA-CAGACAAATA--TAATGCGTCCC-T--GCC-ATGGGAATGGGAT-GA--A-C--A---T-AAAACAAAAGAAGT-C-G-GGAATCCA-GGAAAAAG---GATGT-CATTTCAC--AACCG-TAT-CAC-GAAA-TCAGGCTTAGGCCC--TC---ATC
gi|7 : --G-AG-AACCCCTGTGGTCCTTGAAAATGTCATAC--GTGATGCTAT-TA--AA------------------------TAG--CAT-----CTACTATAATACT--TA-CAGAAAAAAAAATATCT-GTTCC-T--G-T-----GAAA-GGAT-GG--A-C--T---GGAAATCAAAAGAAGC-C-ATGGAATCCGGGGGAAAAG---GATGTACATTTCAC--AAAAGACAT-CAA-CGAA-TCAGG-TTAGGCCCTATCCCTATAATC-AT-------TGTTGA--TGTTTTACTTCTTT-CGAATGTGA-TTCAT--AT--CT-ATTGATATTGTTTTTT----TT-CTTTT-TCATTCTTGAATGTTTTATTTT--C-----TGGG---TTTTAAAAATC-TTTTC--AGGTGCAGCT-----ACTAAAAT--GTGTT----A-TGT---TG-T---ATTCTTGAA-ATTACACAGC--CAGGTAATATTGATTGAGAGAGAGA-GAGAGAGAGAGA
gi|8 : tagtaatgatagtaagggtctatacagtaccgatcccttcgtatctgagACATAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTG-AG-T-CACGG-TTGGGGGGGGGG-G-G--TA-CC--GAGA-A-CAC--TTGATTA---GATAAGA-CGC-TTGGAACGT--A--AA-CA-AA--GG---TGAA-ATC----------CTG---G----T-------GT-GTAC----CACTT---TG-T---TG--TG-G-------------TGG-----GGTTACT-GTA-------AAGTTT-TC-CAAA--C-AAAT----CAGGTAA-ATA-CACTTGAAATGGA--G-GG-----TT-GG--TG-ATTT-GAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNNN-NNN---NNNNNNNNCCAATCCCTACCCCTGTAT-CGTCG-G-AG-A---CCTGTAGTCTTTGAGAATGCCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCC------CTACTATGATAAT--TA-CAGACAAA
gi|9 : ------TGTTAA--TGTTTC--TTCTTTACAGGAGTGA-TTCA-------AC-AT--ATA-----A--------T-CTTTTGTCAGTCTTGAATGTGTTGATTTTCT-----T--G---TGTTAAA------------------AGCA-----ACTAAAATGGGGGGTA--CA--GT--ATG-T--ATTTC---AATA-TACACA-CTTCAGGT-ANN--NN--NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN----NNNNNNCATTACA-GGTG-AAAG-AATG-CTAC-AAA-TATC------ATATATT--GTAC-------G--------GC-----ACAAT-CCAAA-TTACAATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTCTACTACATAGCCCCCCCCCCCCCCCACACCAATTGAAATTATTTCAGTTGTGGCAAATTAAAGATTTTGTTTTGCAAAATTTAGGAT
Unaligned ( gi|21 ): GGGAGAAATGGACCAGCGAGAGCCCAGTTGGAATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 11111 11111 111 11 1111 2222222222 666666666666666666666666666 111 22222222222222 11111111111 111111 111111111111111111 22222 11111 2222222222 11 11111111111 111111 111 111111111111111 11 111 3333 555555555555555555555555 2222222 222222222222 111 111 22222222 2222222 3333333333333 222222222222222 4444444444444444 11111 11 11 111 111 1 111111 1 1111 11 3333333 11 77777777777777777777777 11 11 1 11 1 2222 11 22 1 11111 7777777777777 222 666666666666666666666666666666666666666666666666666 1 44444 1 11 11 1 222 222 1 22 0000000000000000000000000 4444444444 5555555555555555 11 1111 888888888888888888888888 1 1 11 2222 22222 11 1 1 1 1 222 1 33333333 222 111 1 2 1 4444444 11 999999999999999999999999999999999999999999999 22222222222 111 333333 1 1 22222222222 111 2222 1 1111111 2222 22 1 1 1 222 11 22 1 22 33333 1111 1 1 1 4444444444444444 1 33333 1 1111111 2222 1 1 1
lowQualScore : 5 5 5 5 5 888 888 5 888 5 0 5 5 5 5 00000 3 5 11111 5 66 5 5 66 333 5 5 5 66 66 66 5 5 11 2222 5 6666666666 444444444444444444444444444 3 888 5 777 5 99999999999999 44444444444 4 111111 4 888888888888888888 4 00000 0 2 1 7777 11111 4 66 4 66 99 00 6666666666 0 888 00 00000000000 111111 000 888888888888888 666 5 5 1 33 5 5 000 5 0000 8 3 1 77 1 5 77 555555555555555555555555 7777777 4 77 5 888 1 5 5 77 5 5 5 5 888888888888 0 5 5 5 6 1 1 111 2 1 77 0 5 5 5 5 1 000 2 22222222 77 6 1 6 6 6666666 6 6 2222222222222 6 6 7 7 2 777777777777777 9999999999999999 2 66666 55 99 88 0 11 8 777 444 5 0 0 3 2 3 666666 8 0 22 7777 7 6 6 6 0 6 11 6 6666666 11 00000000000000000000000 8 1 999 33 0 99 0 33 0 1111 22 8 55 0 11111 3333333333333 333 222222222222222222222222222222222222222222222222222 3 7 7 1 55555 2 88 0 88 3 333 333 0 3 00 1 6 0000000000000000000000000 0 0000000000 7777777777777777 88 4444 555555555555555555555555 3 3 33 1111 55555 8 8 666 8 5 0 5 4 666 8 0 6 11 0 6 8 8 0 0 0 2 7 7 3 7 333 3 11111111 333 999 6 7 7 7 3 6 3 7777777 11 111111111111111111111111111111111111111111111 11111111111 3 111 444444 3 0 9 66 0 1 88888888888 444 2 3 1111 0 8888888 7 0 8888 55 3 0 3 3 333 88 00 3 7 00 7 88888 1 88 2222 7 3 7 3 3 4444444444444444 7 2 7 33333 7 3 0 7 4444444 0000 3 7 6 3 3
lowQualScore : . . . . . ... ... . ... . . . . . . ..... . . ..... . .. . . .. ... . . . .. .. .. . . .. .... . .......... ........................... . ... . ... . .............. ........... . ...... . .................. . ..... . . . .... ..... . .. . .. .. .. .......... . ... .. ........... ...... ... ............... ... . . . .. . . ... . .... . . . .. . . .. ........................ ....... . .. . ... . . . .. . . . . ............ . . . . . . . ... . . .. . . . . . . ... . ........ .. . . . . ....... . . ............. . . . . . ............... ................ . ..... .. .. .. . .. . ... ... . . . . . . ...... . . .. .... . . . . . . .. . ....... .. ....................... . . ... .. . .. . .. . .... .. . .. . ..... ............. ... ................................................... . . . . ..... . .. . .. . ... ... . . .. . . ......................... . .......... ................ .. .... ........................ . . .. .... ..... . . ... . . . . . ... . . . .. . . . . . . . . . . . . ... . ........ ... ... . . . . . . . ....... .. ............................................. ........... . ... ...... . . . .. . . ........... ... . . .... . ....... . . .... .. . . . . ... .. .. . . .. . ..... . .. .... . . . . . ................ . . . ..... . . . . ....... .... . . . . .
lowQualScore : 0 0 0 0 0 888 888 0 888 0 0 0 0 0 0 99999 1 0 11111 0 99 0 0 99 888 0 0 0 99 99 99 0 0 99 0000 0 9999999999 444444444444444444444444444 4 888 0 555 0 00000000000000 11111111111 4 111111 4 333333333333333333 4 88888 8 4 8 6666 11111 4 11 4 44 66 77 3333333333 4 000 66 99999999999 000000 000 555555555555555 777 7 7 7 66 7 7 000 7 6666 6 6 4 99 4 7 99 000000000000000000000000 0000000 3 99 7 999 7 7 7 99 7 7 7 7 666666666666 1 7 7 0 6 7 5 777 5 0 99 1 7 7 7 7 7 000 5 11111111 99 7 0 7 7 8888888 7 7 8888888888888 7 7 5 3 5 222222222222222 5555555555555555 5 77777 88 22 88 8 00 0 000 000 6 8 0 2 5 2 222222 0 0 00 0000 6 7 7 7 7 7 88 7 3333333 00 44444444444444444444444 0 4 444 66 8 88 0 88 0 2222 55 8 55 0 00000 3333333333333 333 000000000000000000000000000000000000000000000000000 3 3 3 0 33333 0 33 7 33 3 333 333 7 3 77 0 7 0000000000000000000000000 7 7777777777 0000000000000000 33 0000 777777777777777777777777 3 3 88 2222 22222 0 0 888 0 6 6 6 0 666 0 8 4 00 8 4 0 0 8 0 0 0 3 3 3 3 333 3 00000000 333 000 7 3 3 3 3 7 3 0000000 00 444444444444444444444444444444444444444444444 55555555555 2 000 555555 2 0 8 55 0 0 88888888888 555 5 2 2222 0 3333333 3 7 3333 33 3 7 3 3 333 33 77 3 3 00 3 77777 0 33 0000 3 3 3 3 3 0000000000000000 3 3 3 33333 3 3 7 3 0000000 3333 3 3 7 3 3
consensus : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGATCACG----CGG---CGGTTT--ATTTGAGTCNTNNAT-ATGATGATAG-GGNA-GTG---ACACCCCCCC--------CCCCCG-AAT-C-GTC--G-AG-A---CCCG-TGGT-GTTGNGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATA-AT-ATGGATA-----AATT----TT-CTTTT-TCANTCTTGAATGTGTTGATTT--C-----T--G---TTTTAAA-----TTTTT--AG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--G-T--AATTC---AATATTACACA-CTTCAGGTAATA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATC----A-ATATATT--GTAC--A---TG--------TN-----ACAAC-CGAAA-TTA-AATCTTAAT-AAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTGT-GCCCCCCCCCC-------------TTTTTTTTTT---AATT-----AGCAGGA-AGTTA-ACAA---AGTG-CAG-GA--TGCA-------GGTTA-TAGAAATTATGAATTGAANCC-C---GCATCCAAG--CTCGC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAACGATGC-ACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------CGTATACGTACAT-C-GATA--TATTAT-TTT------GAA--TAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAAG-----T-----G-ACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAG--G--TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TAC----ATT-TCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTTCA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-CGTTA-A----TACAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTNATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-A-AATCACTTAAATTA-----GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TT-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
Reference ( family-1663 ) : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGATCACG----CGG---CGGTTT--ATTTGAGTCNTNNAT-ATGATGATAG-GGNA-GTG---ACACCCCCCC--------CCCCCG-AAT-C-GTC--G-AG-A---CCCG-TGGTCGTTGNGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATA-AT-ATGGATA-----AATT----TT-CTTTT-TCANTCTTGAATGTGTTGATTT--C-----T--G---TTTTAAA-----TTTTT--AG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--G-T--AATTC---AATATTACACA-CTTCAGGTAATA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATC----A-ATATATT--GTAC--A---TG--------TN-----ACAAC-CGAAA-TTA-AATCTTAAT-AAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTGT-GCCCCCTCCCC-------------TTTTTTTTTT---AATT-----AGCAGGA-AGTTAGACAA---AGTG-CAG-GA--TGCA-------GGTTA-TAGAAATTATGAATTGAANCC-C---GCATCCAAG--CTCGC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAACGATGC-ACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------CGTATACGTACAT-C-GATA--TATTAT-TTT------GAA--TAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAAG-----T-----G-ACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAG--G--TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TAC----ATT-TCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTTCA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-CGTTA-A----TACAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTNATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-A-AATCATTTAAATTA-----GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TT-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
gi|1 : AAAC-CA-G-CTA-CCG---T---TT-CCGG---TT-TTTGAATTTTTAG-T-CACGG-TT----TATGGGTG-A--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGACCGC-TTG--ACGT--A--AA-CA-AAT-TG---TGAATATACTCATATTACCTG---TCAC-T-------GT-GACTGT--CATCT---TG-TGTCTG-TTGTGTACACATCGTTGTTGGTTTGGGG----CCGTTA---C--AAGTTT-CCTT--A--C-AAAT----CAGG-AA-ATA-CATTT----T--------------TT-GG--TG-ATTT-AACGGGAANNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNNN-NNA---ACA-----AC--------CCCCCA-AAT-C-ATCTGG-AG-A---CCCGCTG---GTTGTGAATGTCATTC---TGTTGC--C-TAATAA------------------------TAGACCA------TTACTAAATTAAT--TACCAGACAAAAT--TAACG-GTCCCTT--G-C-ATGGGAAT-GGATGG---A-CAGA---GAAAAACAAAAGAAGA-CAATGGAATCCAAGGAAAAAGGAAGATCTGCATTTCAC--AAAAGATAT-CACATAAATTCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATATAT-ATGGATA-----AATTAA--AT-CTTTT-TCAATCTTGAATGT-TTGATTT--G-----T--G---GTTT--G-----TTTTT--AA--A-AGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--GAT--TATTC---AATATTACACA-CTTCAGGTAAGA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGAGAGAGGCAGAGAGCACTACA-GGTGAAAAG-AATG-CTAC-CAA-TATC-------TATATT--GTAC--A---T---------TC-----ACAAC-CAAAATTTC-AATCTTAAT-AAT-AATGCGAAG-GT----ATTT-CAA-AATATTATTTGT-GC-----CCCC-------------TTTTTTTTTTATAAATT----------GA-AGTTA-ACAAATTAATG-CAGCAA--TGCAGATGTTGGGTTA-TAGAAATTATAAATTGAAAAC-CATGGCAT-CAAGGACTCAC--CCACCCCATATTAAGA---AATTTTGAG---ACAATGATGC-ACTA-ATAACATA--CCCCCCCCC----------ATTTTTT-------TGTATATGTATATCC-AATA--TATTA--TTT------GAAATTAAGATTTAAAAATTG--TCA--TCTAAAACCTTTTT--TAGTAAG-----TTAAGGG-ATCACTTTCATCCCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAGGAG--TGA-AATAT-GGAGCGGAAA-CC-GCTTTTG-TGTCAAGGGTGGCAATATTAAAATCAGTACTTACC-AGGAATCTGACAGGTCCGAGTGAGAAAAGACTCAATC-AGACTGCACA-T--G-ACC-AAAATATGACATCCGCCCGTTGTCAACTCTTAAACGTTTATT-ATAG-ATT---GATTAC----ATTATCCAAAGG---CAT--TGTGACATATGTCTT--GTTATTAA-ATTCCCTTA-AATGTATAC-ACTGTA---ATGTTGTTATA--TTATA--C---A-ACAT----T-A-G-CTTTG-G----T----------TTT--A-TTA---TAAATCAC-A-ACTT----TGAAATTTTTGAAAATTCATA-TCAATTA---------T-TTAAAAAGTAAAA----AACATGTGCAG-GCAA--AATTTATAGGCATA----TATTGT-TCATGGGCCT-GTTGT-TTGGCCAAGT-GA---ACTG--AATTTTCATTTATA-GCCTATAACGACCTACTGTATTTATAACAATAAAAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTTAATTAATCATGTTAGTA-GTGGGAAGTTACATACGATACAT-CATCAA-AATCATTTAAATTA-----GTCTATC-AAAAA-GTCACTGATGACAAAGTATATGAAGA-TT-CA-AT---TCA-T---A---AAACT-GAAGAAATTCT
gi|10 : aca-CA-GAC-A-CCG---TGTATT-CCGGCGTTTATT-GATTCTT-AG-T-CACGG-TG----TA-GGG-G-G--TA-CCTGGAGA-A-CGC--TT-ATCG---GAT-CGA-CGCTTTT--AAGT--ACTAA-CATAA--TGGGCTGAG-ATA----------CTG---T----T-------GC-ATGGATACCAC-T---TA-TGAGTG-CTGCCT-----------TCGG-----AG----G-GTCA---CAAAAGTTC-CC-CGGA--CTGAATATCGCAAG-AA-ATTACACTTAAAATGGAGGA-GG-----TT-GG--CA-ATTT-AAT-GTATcctgttgtgcatcttggtctatacttgggaatgcagtattggataaagtggtccaatagttcatcatgtatagaaaagggtaacttcagggaaatctgaaatgagtttgaaagtgcattcaa
gi|11 : cgC-CA-G-C-A-CCG---T---TT-CCGG---TT-TC-AAATTTT-AG-T-CACGG-TT----AATGGG-GTA--TA-CC--GAGA-A-CGC--TTGATCA---GTT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--GG---TGAA-ATA----------CTG---G----TGTGTACAGT-A-------CATAT---TG-C---TG-TTG-GT-----------TT-G-----GA----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-GTA-CACTTGAAATGGA--G-GG-----CT-GG--TG-ATTG-AAT-GGATCAC
gi|12 : CATTTTTGTGA--CAGA----AAGAAGAG--GAGTGA-CATAT-GGAGCGAA--------------TTCCAAGGATGGCAATATTAAGATCAGTACTTCCC-AGGAATCTGACAGAGCGAAGTGAG--AGGATTCAATCGAGA-TGCACA-CTGG-ACC-AAAaa
gi|13 : --TTT--TATCAT---AAATCACTATAC-TATCATGAAA-TTATGAAAATTCATG-TTCATCAG-A--TCGTTATT--CAAGTCAGACAATGACAT-TGCAGTACAA-
gi|14 : ttaaattatgaacatagctttgttcaaactgcCACTACAGGGTG-AGAA-AGTGTCTACAGAAGTATC----A--TATATTAGGTACCAA---CG--------TTTTTCGACAAC-CAAAA-TTA-AATCTTCAT--AT-AATGC--AATGT----ATTTGCAAAAATATCA-TTGT-G
gi|15 : GG-----GG----C-GTAA---C--AAGTTT-CC-T--A---------------G-AA-AT--CA-------TGGA--A-GG-----CT-GG--TG-ATTA-AAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNTACGTG---TAACCCCCCC--------CCCCCgc
gi|16 : cAGAGGAG-----TGA-AATAT-GGAGTGGAAACCC-GCCTTTGATGTCAAGGGTGGCAATA------------CTTCCC-AGGAATCTGACAGAGCAGAGTGAG--AAGACTCAATCAAGA-TGCACA-CTc
gi|17 : TG----ATAAATCACTACAGGGTG-AAAG-AACG-TTAC-G-A-TATCGTGTA-ATAT
gi|19 : ta--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-GG--A-C--G---AAAAAACAAAAGAAAT-C-ATGGAATCCAGGAAAtcagcttgatccccactgtaactgcaactttttattatcaattcaacgcaattt
gi|2 : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-A--TAACC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATT--AAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNAG-GTTA-CTG---ACACCCCCCC--------CCCCCC-GAT-C-GTC--G-AG-A---CCCG-TA-----TGGGAGTG-CATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-A-ATGG--------------G---GATGTGCATTTCAC--AAAAAGTAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGA-C------T-TTAA--TGTTTC-CTTTCTT-CGAACGTGA-TTCAC--A-A-AT-ATTGATA-----AATT----TTTCTTTT-TCA-TCTTGAATGTGTTGATTT--C-----T--G---TTTTAAA-----TTTTTTTAG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTACACG-T--AATT-------ATTA------TTTA--TACTA--GN--NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNTTTG----ATAAA-CACTACAGGGTG-AAAG-AATG-CTAC--AA-TATC----A-ATATATT--GTAC--A---TG--------TA-----ACAACACGA---TTA-AATCTTAATTAAT-AATGC--AA-GT----ATTT-CGACAATATT--TTGTTGCCCCCCCCCC-------------TTTTTTTTAT---AAT------AGCAGGA---TTGG-------------------------------GGTTA-TAGAAATTATGAATTGAACCCAT---GCATCCAAG--CTCAC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAATGATGC-ACT--ATATCATACCCCCCCTCCCGAATTGTTGTGTTTTTTGTTTTTGTATATATGTACAT-CAAATATTTATTATGTTTTTTATGAAA--TAAGATTTAAAATTTG--TCAATA-TAAAACCTTTTTAGTAGTAAGGTACAT-----GTACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--AAGA----AAGAAGA---G--TGA-AATAT-GGAGAGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCTGTACTTCCC-AGAAATCTGACAGAGCCAAGTGAG--AGGACTCAATTGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGT-GTCAACTCATAAACGTTTATT-ATAGATTT---GA-TAC----A-T-TCCACAGG---CAT--TGTGAC--ATGTCTTTGATTA-TAA-ATTCTTACATCATGTATAC-ACTGTATACATGATGTAAGAATTTATAATCAAGG-ACATATGTT-ATGTTGTTATATTATTACAACATAGGTTTGCT-TTATCATAAATCAC-A-AC------TGAAA-TTTTGAAAA-TCATATTTCATCAG-ATGTTGCT-TT--AACGTCAAA----AACAT-TGCAGCACAATTAATTTATAAGCATA----TATTGTGCCATGGGCAT-GTTGT-TTGGCCAAGT-GA---ACTC--AATTT---TTTATA-GCCTATAACGA-CTACTGTA--T--AACATTATTTGCAAG-AAACAAACCTTTGGTTCTTTTAATGTGT-ATTAATCATGTTAGTA-GT-GGGAGTTACATA---------TATG-T-AATCA-TTAAATTA-----GTCTATCAAAACA-GTCGCTGATGACAAAGTCACTGAAGATTT-TA-ATATCACATTTTCACGTAGACT-GAAG-AATTCT
gi|20 : C--AAAAGATAT-CAC-CGAA-TCAGG-TTAGGCCTTATC---ATCAT-----------TGTTGA--TTTTt
gi|3 : ----ATAAATCACTA--GGGTG-AACTTAACG-TTAC-GAA-TATC----GTGTA-ATC--ATTC--AGCTTGATCCCCACTG-----ATAAC-TGCAC-TT----TTTTGAT-TATCAATTC--AA-GCGGCAATTT--GACAATATT--TTGT-GCCTCCTCCCCCTCCCCTACGGTTTTTTTTTTTC---AATTGAGTAAGCAAGCTAGTTATATAA---AGTGTCAG-GAATTGCA-------GGTTACTAGAA-TTATGAAT-GAATCC-CT--GCATTCAAG--CCCGCGCCCACCCCTT-TTAAAGCATAATTTTTAGCAAACAACGATTTTACTATATAGCCCCCCCGCCCCCCC----------G-------------CGCCTACTTGCA----GAT---TATTAT-T--------GGA--TAAGATATAGCATTTGGTTCAATGCTAAAAGCTTTTTAG----------------------AATTTTCA-ACTAAACAAATTCGTCTAACAATTCCTTTTTCTGAGACAGATTGAAAGAAAAG--A--TGATAATATTGAAGCTGATACCCTGTTTTTGATTTCAAGGGTGGCAATAGTAGTATCA--ACTTTCCGAGGAA--TGACAGAGCC-AGCGAG--AGG--TCAATCAAGA-TGCACAGCTGGTACCGAAAACTTGGCATGCGGTCCTCGTCAACTCAT-AACG-TTATTCATATAATTATGGA-TACAATTATT-TCGAAAGGTCCCATACCAT-ACATATGTCTTTGATTATTAAGATTCTTTCAGCATGCATGCAACATTA-GC-TT-TGTTTTAACTTAT-ATAAA-ATACAGATG-GAATA-TGTTA-A----AACAA-ATA--TTT--T-TCAT--TAAGAC-C-A-AG-T----GG----TT---AGAAT--AGA-TTGAACAACA--TCCTT-TT--GCA-TC-AA----AGCAC-TGCAGCG----TAATTTA-AGGGGTGGGGTTATTGT----TGGCTCTAGTCGTATTGGCCAAGTAGAGGTACTCTTAATTTT-ATTTATAGGCCTA-AATAA--TAC---A--AA-AACACC-CTAAC---AAAACTACCGTTAGGT--TTATTATGTTT-ATTTATCATA--AGTACAT-GCAAGTTACATACA--ACACTCATC-ACAA--ACTTAA--TAGTCCTGTCTATTAAAAAAGGTCACTAAAGAAATAATCAC-----A-TCATACATGCTCCA-TTTCACGTAGACTGGAAG-AATTC
gi|4 : CAAACGCAAG-C-AACCGGGTT---TT-CCCG---TT-T--GAATTTT--G-TGCACGG-TT----TATGGG-G-GATTA-CC--GAAA-A-CGCCCTTGATCGAGAGAT-AGA-CGC-TTG--ACGTCAA--GA-CA-AA--TG-----GA-ACA----------CTGGTGTG---T-------GT-A-------CACAT---CG-T---TG-TTG-GT-----------TTGG-----GGG---C-GTAAGACC--AAGTTTTCC-T--GTTC-AAATT---CAGG-AA-TA--CACCTAAA-TGGA--A-AGTAGCCCT-GGGCTGGATTT-AACCGGAACACGGGAACGG---TGGATT--ATTTGAGTCTGTGAT-A--ATGATAGAGGCA-GTGTGTACACACCCCA--------AATCTA-AAT-C-G----G-AGGA---CCCA-TGGTTGTTG--AATGTC-TTC--GTGTTGCTAA-TA--ANNNNNNNNNNNNNNNNNNNNNNNNNTAGACCC------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---AAC--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGAAAAAGG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCAATC---ATCATCGATCTGATAATGTTAAATTGTTTC-CTTCTTT-CGAACGTGA-TTCACATATA-ATAATGGATA-----AATTAAAATC-TTTTT-CCAATCTTG-ATGTGTTGATTT--TCTGGGT--G---TTTTAAA------------AA--GCAAAT-----ACTAAAATA-GGGGTATTCATTGTAT--G-TTAAATTC---AATATTACAcctttgctcctgccccacactaacattcatatttggaatcgccgcacgtccaatacccgctggaccagcaccagagcaatgatctgtagtagaaaagcggaatttcatagaacaacgacctgaaataatcgtgcattcaa
gi|5 : AC-CA-G-C-A-CCG---T---TT-CCGG---TT-TTTGAATTTT-AGAT-CACG----------------------------AAA-ATCGC--TTGATCGT--GAT-AGA-CGC-TTG--ACGT--A--AATCA-AAGTTG----GAA-ATAT---------CTG---TGGTGT-------GTCA-------CACATATATG-T---TG-TTGCGT-----------TTGG-----G-----C-GTAA---C--AAGTTT-CC-A--A--C-GA------TAGG-AATAC--CACTTAAAATGGC--A-GG-----CTTGG--TG-ATTTTAAT-GGACTACG-----GGAACCGGTTT--ATTTG-GTCATGTAT-ATATTGATAG-TAGG-GTG---AAACCTCACC-------------GTAGTAC-GTC--GGAG-A---CCC----------------------C--GTGTT-------------------------------------AGACCAGGGTATCTA--ATAATAAT--TA-CAGACAGATA--TA-CG-GTCCC-TTGA-CTATGGGAAT-GGAT-GTGGA-C--ATGTAAAACACAAAAGAAGTTC-ATGG--------------G---GAT-TGCATTTCACCCAAAAGATATTCAC-TAAA-TCAGG-TTAGGCCCTCTC---ATCATCGATC------TGTATA--CCTTTC-CTT-TTT-CGAACGTGAGTTCAC--TAA-AT-ATGGATA-----AAGT----TT-TTTCT-TCATTCTTG-ATGTGTTGATTT--C-----T--GGGTTTTTAAAATCCTTTTTT--AG--GCGACAGCTATACTAAAAT--GGGGTA--Ct
gi|6 : atAAAC-CA-G-C-A-CCG---T---TTTCCGG---TT-TT-GAATTTT-AG-T-CACGGTTT----TATGGG-G-G---A-TC--GAAAGA-CGC--TTGA-CG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---T--A-ATA----------CTG---TTG--T-------GT-A-------CACAT---CGAT---TGTTTG-GT-----------TTGG-----GG----C-GTAA---CA-AAGTTC-GC-T--A----AAAT-----AGG-AA-TA--CAC-TAAAATGGA--AGGG-----CT-GG--TG-ATTT-AAC-GAACAACG----GAA---CGGTTGAAATTT--GTCGT-AATAATGATAGTAG-GGGT-GTA---ACA------C--------CCCCCA-AAT-C-ATC--G-AG-A---CCCG-TG---GTTGTGAATGTCATTTCGGTGTTGCTACGTA--AA------------------------TAGACC-------CTA-TATTATAATTATA-CAGACAAATA--TAATGCGTCCC-T--GCC-ATGGGAATGGGAT-GA--A-C--A---T-AAAACAAAAGAAGT-C-G-GGAATCCA-GGAAAAAG---GATGT-CATTTCAC--AACCG-TAT-CAC-GAAA-TCAGGCTTAGGCCC--TC---ATC
gi|7 : C--------CCTTCG-TAT-CTGAG--G-AG-AACCCCTG-TGGTCCTTGAAAATGTCATAC--GTGATGCTAT-TA--AA------------------------TAG--CAT-----CTACTATAATACT--TA-CAGAAAAAAAAATATCT-GTTCC-T--G-T-----GAAA-GGAT-GG--A-C--T---GGAAATCAAAAGAAGC-C-ATGGAATCCGGGGGAAAAG---GATGTACATTTCAC--AAAAGACAT-CAA-CGAA-TCAGG-TTAGGCCCTATCCCTATAATC-AT-------TGTTGA--TGTTTTACTTCTTT-CGAATGTGA-TTCAT--AT--CT-ATTGATATTGTTTTTT----TT-CTTTT-TCATTCTTGAATGTTTTATTTT--C-----TGGG---TTTTAAAAATC-TTTTC--AGGTGCAGCT-----ACTAAAAT--GTGTT----A-TGT-T--G-T---ATTCTTGAA-ATTACACAGC--CAGGTAATATTGATTGAGAGAGAGA-GAGAGAGAGAGA
gi|8 : tagtaatgatagtaagggtctatacagtaccgatACATAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTG-AG-T-CACGG-TTGGGGGGGGGG-G-G--TA-CC--GAGA-A-CAC--TTGATTA---GATAAGA-CGC-TTGGAACGT--A--AA-CA-AA--GG---TGAA-ATC----------CTG---G----T-------GT-GTAC----CACTT---TG-T---TG--TG-G-------------TGG-----GGTTACT-GTA-------AAGTTT-TC-CAAA--C-AAAT----CAGGTAA-ATA-CACTTGAAATGGA--G-GG-----TT-GG--TG-ATTT-GAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNNN-NNN---NNNNNNNNCCAATCCCTACCCCTG-TAT-C-GTCG-G-AG-A---CCTG-TAGTCTTTGAGAATGCCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCC------CTACTATGATAAT--TA-CAGACAAA
gi|9 : ------TGTTAA--TGTTTC--TTCTTTACAGGAGTGA-TTCA-------AC-AT--ATA-----A--------T-CTTTTGTCAGTCTTGAATGTGTTGATTTTCT-----T--G---TGTTAAA------------------AGCA-----ACTAAAATGGGGGGTA--CA--GTAT--G-T--ATTTC---AATA-TACACA-CTTCAGGT-ANN--NN--NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN----NNNNNNCATTACA-GGTG-AAAG-AATG-CTAC-AAA-TATC------ATATATT--GTAC-------G--------GC-----ACAAT-CCAAA-TTACAATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTCTACTACATAGCCCCCCCCCCCCCCCACACCAATTGAAATTATTTCAGTTGTGGCAAATTAAAGATTTTGTTTTGCAAAATTTAGGAT
Unaligned ( gi|21 ): GGGAGAAATGGACCAGCGAGAGCCCAGTTGGAATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 11111 11111 111 11 1111 2222222222 666666666666666666666666666 111 22222222222222 11111111111 111111 111111111111111111 22222 11111 2222222222 11 11111111111 111111 111 111111111111111 11 111 44444 555555555555555555555555 2222222 222222222222 111 111 22222222 2222222 3333333333333 222222222222222 4444444444444444 11111 11 11 111 111 1 111111 1 1111 11 3333333 11 77777777777777777777777 11 11 1 11 1 2222 11 22 1 7777777777777 222 555555555555555555555555555555555555555555555555555 1 44444 1 11 11 1 222 222 1 22 0000000000000000000000000 4444444444 5555555555555555 11 1111 888888888888888888888888 1 1 11 2222 22222 11 1 1 1 1 222 1 33333333 222 111 1 2 1 4444444 11 999999999999999999999999999999999999999999999 22222222222 111 333333 1 1 22222222222 111 2222 1 1111111 2222 22 1 1 1 222 11 22 1 22 33333 1111 1 1 1 4444444444444444 1 33333 1 1111111 2222 1 1 1
lowQualScore : 5 5 5 5 5 888 888 5 888 5 0 5 5 5 5 00000 3 5 11111 5 66 5 5 66 333 5 5 5 66 66 66 5 5 11 2222 5 6666666666 444444444444444444444444444 3 888 5 777 5 99999999999999 44444444444 4 111111 4 888888888888888888 4 00000 0 2 1 7777 11111 4 66 4 66 99 00 6666666666 0 888 00 00000000000 111111 000 888888888888888 666 5 5 1 33 5 5 000 5 11111 8 3 1 77 1 5 77 555555555555555555555555 7777777 4 77 5 888 1 5 5 77 5 5 5 5 888888888888 0 5 5 5 6 1 1 111 2 1 77 0 5 5 5 5 1 000 2 22222222 77 6 1 6 6 6666666 6 6 2222222222222 6 6 7 7 2 777777777777777 9999999999999999 2 66666 55 99 88 0 11 8 777 444 5 0 0 3 2 3 666666 8 0 22 7777 7 6 6 6 0 6 11 6 6666666 11 00000000000000000000000 8 1 999 33 0 99 0 33 0 1111 22 8 55 0 888 3333333333333 333 555555555555555555555555555555555555555555555555555 3 7 7 1 55555 2 88 0 88 3 333 333 0 3 00 1 6 0000000000000000000000000 0 0000000000 7777777777777777 88 4444 555555555555555555555555 3 3 33 1111 55555 8 8 666 8 5 0 5 4 666 8 0 6 11 0 6 8 8 0 0 0 2 7 7 3 7 333 3 11111111 333 999 6 7 7 7 3 6 3 7777777 11 111111111111111111111111111111111111111111111 11111111111 3 111 444444 3 0 9 66 0 1 88888888888 444 2 3 1111 0 8888888 7 0 8888 55 3 0 3 3 333 88 00 3 7 00 7 88888 1 88 2222 7 3 7 3 3 4444444444444444 7 2 7 33333 7 3 0 7 4444444 0000 3 7 6 3 3
lowQualScore : . . . . . ... ... . ... . . . . . . ..... . . ..... . .. . . .. ... . . . .. .. .. . . .. .... . .......... ........................... . ... . ... . .............. ........... . ...... . .................. . ..... . . . .... ..... . .. . .. .. .. .......... . ... .. ........... ...... ... ............... ... . . . .. . . ... . ..... . . . .. . . .. ........................ ....... . .. . ... . . . .. . . . . ............ . . . . . . . ... . . .. . . . . . . ... . ........ .. . . . . ....... . . ............. . . . . . ............... ................ . ..... .. .. .. . .. . ... ... . . . . . . ...... . . .. .... . . . . . . .. . ....... .. ....................... . . ... .. . .. . .. . .... .. . .. . ... ............. ... ................................................... . . . . ..... . .. . .. . ... ... . . .. . . ......................... . .......... ................ .. .... ........................ . . .. .... ..... . . ... . . . . . ... . . . .. . . . . . . . . . . . . ... . ........ ... ... . . . . . . . ....... .. ............................................. ........... . ... ...... . . . .. . . ........... ... . . .... . ....... . . .... .. . . . . ... .. .. . . .. . ..... . .. .... . . . . . ................ . . . ..... . . . . ....... .... . . . . .
lowQualScore : 0 0 0 0 0 888 888 0 888 0 0 0 0 0 0 99999 1 0 11111 0 99 0 0 99 888 0 0 0 99 99 99 0 0 99 0000 0 9999999999 444444444444444444444444444 4 888 0 555 0 00000000000000 11111111111 4 111111 4 333333333333333333 4 88888 8 4 8 6666 11111 4 11 4 44 66 77 3333333333 4 000 66 99999999999 000000 000 555555555555555 777 7 7 7 66 7 7 000 7 11111 6 6 4 99 4 7 99 000000000000000000000000 0000000 3 99 7 999 7 7 7 99 7 7 7 7 666666666666 1 7 7 0 6 7 5 777 5 0 99 1 7 7 7 7 7 000 5 11111111 99 7 0 7 7 8888888 7 7 8888888888888 7 7 5 3 5 222222222222222 5555555555555555 5 77777 88 22 88 8 00 0 000 000 6 8 0 2 5 2 222222 0 0 00 0000 6 7 7 7 7 7 88 7 3333333 00 44444444444444444444444 0 4 444 66 8 88 0 88 0 2222 55 8 55 0 777 3333333333333 333 000000000000000000000000000000000000000000000000000 3 3 3 0 33333 0 33 7 33 3 333 333 7 3 77 0 7 0000000000000000000000000 7 7777777777 0000000000000000 33 0000 777777777777777777777777 3 3 88 2222 22222 0 0 888 0 6 6 6 0 666 0 8 4 00 8 4 0 0 8 0 0 0 3 3 3 3 333 3 00000000 333 000 7 3 3 3 3 7 3 0000000 00 444444444444444444444444444444444444444444444 55555555555 2 000 555555 2 0 8 55 0 0 88888888888 555 5 2 2222 0 3333333 3 7 3333 33 3 7 3 3 333 33 77 3 3 00 3 77777 0 33 0000 3 3 3 3 3 0000000000000000 3 0 3 33333 3 3 7 3 0000000 3333 3 3 7 3 3
consensus : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGATCACG----CGG---CGGTTT--ATTTGAGTCNTNNAT-ATGATGATAG-GGNA-GTG---ACACCCCCCC--------CCCCCG-AAT-C-GTC--G-AG-A---CCCG-TGGT-G-TTGNGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATA-AT-ATGGATA-----AATT----TT-CTTTT-TCANTCTTGAATGTGTTGATTT--C-----T--G---TTTTAAA-----TTTTT--AG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--G-T--AATTC---AATATTACACA-CTTCAGGTAATA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATC----A-ATATATT--GTAC--A---TG--------TN-----ACAAC-CGAAA-TTA-AATCTTAAT-AAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTGT-GCCCCCCCCCC-------------TTTTTTTTTT---AATT-----AGCAGGA-AGTTA-ACAA---AGTG-CAG-GA--TGCA-------GGTTA-TAGAAATTATGAATTGAANCC-C---GCATCCAAG--CTCGC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAACGATGC-ACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------CGTATACGTACAT-C-GATA--TATTAT-TTT------GAA--TAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAAG-----T-----G-ACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAG--G--TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TAC----ATT-TCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTTCA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-CGTTA-A----TACAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTNATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-A-AATCACTTAAATTA-----GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TT-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
Reference ( family-1663 ) : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGATCACG----CGG---CGGTTT--ATTTGAGTCNTNNAT-ATGATGATAG-GGNA-GTG---ACACCCCCCC--------CCCCCG-AAT-C-GTC--G-AG-A---CCCG-TGGT-G-TTGNGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATA-AT-ATGGATA-----AATT----TT-CTTTT-TCANTCTTGAATGTGTTGATTT--C-----T--G---TTTTAAA-----TTTTT--AG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--G-T--AATTC---AATATTACACA-CTTCAGGTAATA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATC----A-ATATATT--GTAC--A---TG--------TN-----ACAAC-CGAAA-TTA-AATCTTAAT-AAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTGT-GCCCCCCCCCC-------------TTTTTTTTTT---AATT-----AGCAGGA-AGTTA-ACAA---AGTG-CAG-GA--TGCA-------GGTTA-TAGAAATTATGAATTGAANCC-C---GCATCCAAG--CTCGC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAACGATGC-ACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------CGTATACGTACAT-C-GATA--TATTAT-TTT------GAA--TAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAAG-----T-----G-ACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAG--G--TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TAC----ATT-TCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTTCA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-CGTTA-A----TACAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTNATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-A-AATCACTTAAATTA-----GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TT-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
gi|1 : AAAC-CA-G-CTA-CCG---T---TT-CCGG---TT-TTTGAATTTTTAG-T-CACGG-TT----TATGGGTG-A--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGACCGC-TTG--ACGT--A--AA-CA-AAT-TG---TGAATATACTCATATTACCTG---TCAC-T-------GT-GACTGT--CATCT---TG-TGTCTG-TTGTGTACACATCGTTGTTGGTTTGGGG----CCGTTA---C--AAGTTT-CCTT--A--C-AAAT----CAGG-AA-ATA-CATTT----T--------------TT-GG--TG-ATTT-AACGGGAANNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNNN-NNA---ACA-----AC--------CCCCCA-AAT-C-ATCTGG-AG-A---CCCGCTG---G-TTGTGAATGTCATTC---TGTTGC--C-TAATAA------------------------TAGACCA------TTACTAAATTAAT--TACCAGACAAAAT--TAACG-GTCCCTT--G-C-ATGGGAAT-GGATGG---A-CAGA---GAAAAACAAAAGAAGA-CAATGGAATCCAAGGAAAAAGGAAGATCTGCATTTCAC--AAAAGATAT-CACATAAATTCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATATAT-ATGGATA-----AATTAA--AT-CTTTT-TCAATCTTGAATGT-TTGATTT--G-----T--G---GTTT--G-----TTTTT--AA--A-AGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--GAT--TATTC---AATATTACACA-CTTCAGGTAAGA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGAGAGAGGCAGAGAGCACTACA-GGTGAAAAG-AATG-CTAC-CAA-TATC-------TATATT--GTAC--A---T---------TC-----ACAAC-CAAAATTTC-AATCTTAAT-AAT-AATGCGAAG-GT----ATTT-CAA-AATATTATTTGT-G-----CCCCC-------------TTTTTTTTTTATAAATT----------GA-AGTTA-ACAAATTAATG-CAGCAA--TGCAGATGTTGGGTTA-TAGAAATTATAAATTGAAAAC-CATGGCAT-CAAGGACTCAC--CCACCCCATATTAAGA---AATTTTGAG---ACAATGATGC-ACTA-ATAACATA--CCCCCCCCC----------ATTTTTT-------TGTATATGTATATCC-AATA--TATTA--TTT------GAAATTAAGATTTAAAAATTG--TCA--TCTAAAACCTTTTT--TAGTAAG-----TTAAGGG-ATCACTTTCATCCCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAGGAG--TGA-AATAT-GGAGCGGAAA-CC-GCTTTTG-TGTCAAGGGTGGCAATATTAAAATCAGTACTTACC-AGGAATCTGACAGGTCCGAGTGAGAAAAGACTCAATC-AGACTGCACA-T--G-ACC-AAAATATGACATCCGCCCGTTGTCAACTCTTAAACGTTTATT-ATAG-ATT---GATTAC----ATTATCCAAAGG---CAT--TGTGACATATGTCTT--GTTATTAA-ATTCCCTTA-AATGTATAC-ACTGTA---ATGTTGTTATA--TTATA--C---A-ACAT----T-A-G-CTTTG-G----T----------TTT--A-TTA---TAAATCAC-A-ACTT----TGAAATTTTTGAAAATTCATA-TCAATTA---------T-TTAAAAAGTAAAA----AACATGTGCAG-GCAA--AATTTATAGGCATA----TATTGT-TCATGGGCCT-GTTGT-TTGGCCAAGT-GA---ACTG--AATTTTCATTTATA-GCCTATAACGACCTACTGTATTTATAACAATAAAAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTTAATTAATCATGTTAGTA-GTGGGAAGTTACATACGATACAT-CATCAA-AATCATTTAAATTA-----GTCTATC-AAAAA-GTCACTGATGACAAAGTATATGAAGA-TT-CA-AT---TCA-T---A---AAACT-GAAGAAATTCT
gi|10 : aca-CA-GAC-A-CCG---TGTATT-CCGGCGTTTATT-GATTCTT-AG-T-CACGG-TG----TA-GGG-G-G--TA-CCTGGAGA-A-CGC--TT-ATCG---GAT-CGA-CGCTTTT--AAGT--ACTAA-CATAA--TGGGCTGAG-ATA----------CTG---T----T-------GC-ATGGATACCAC-T---TA-TGAGTG-CTGCCT-----------TCGG-----AG----G-GTCA---CAAAAGTTC-CC-CGGA--CTGAATATCGCAAG-AA-ATTACACTTAAAATGGAGGA-GG-----TT-GG--CA-ATTT-AAT-GTATcctgttgtgcatcttggtctatacttgggaatgcagtattggataaagtggtccaatagttcatcatgtatagaaaagggtaacttcagggaaatctgaaatgagtttgaaagtgcattcaa
gi|11 : cgC-CA-G-C-A-CCG---T---TT-CCGG---TT-TC-AAATTTT-AG-T-CACGG-TT----AATGGG-GTA--TA-CC--GAGA-A-CGC--TTGATCA---GTT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--GG---TGAA-ATA----------CTG---G----TGTGTACAGT-A-------CATAT---TG-C---TG-TTG-GT-----------TT-G-----GA----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-GTA-CACTTGAAATGGA--G-GG-----CT-GG--TG-ATTG-AAT-GGATCAC
gi|12 : CATTTTTGTGA--CAGA----AAGAAGAG--GAGTGA-CATAT-GGAGCGAA--------------TTCCAAGGATGGCAATATTAAGATCAGTACTTCCC-AGGAATCTGACAGAGCGAAGTGAG--AGGATTCAATCGAGA-TGCACA-CTGG-ACC-AAAaa
gi|13 : --TTT--TATCAT---AAATCACTATAC-TATCATGAAA-TTATGAAAATTCATG-TTCATCAG-A--TCGTTATT--CAAGTCAGACAATGACAT-TGCAGTACAA-
gi|14 : ttaaattatgaacatagctttgttcaaactgcCACTACAGGGTG-AGAA-AGTGTCTACAGAAGTATC----A--TATATTAGGTACCAA---CG--------TTTTTCGACAAC-CAAAA-TTA-AATCTTCAT--AT-AATGC--AATGT----ATTTGCAAAAATATCA-TTGT-G
gi|15 : GG-----GG----C-GTAA---C--AAGTTT-CC-T--A---------------G-AA-AT--CA-------TGGA--A-GG-----CT-GG--TG-ATTA-AAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNTACGTG---TAACCCCCCC--------CCCCCgc
gi|16 : cAGAGGAG-----TGA-AATAT-GGAGTGGAAACCC-GCCTTTGATGTCAAGGGTGGCAATA------------CTTCCC-AGGAATCTGACAGAGCAGAGTGAG--AAGACTCAATCAAGA-TGCACA-CTc
gi|17 : TG----ATAAATCACTACAGGGTG-AAAG-AACG-TTAC-G-A-TATCGTGTA-ATAT
gi|19 : ta--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-GG--A-C--G---AAAAAACAAAAGAAAT-C-ATGGAATCCAGGAAAtcagcttgatccccactgtaactgcaactttttattatcaattcaacgcaattt
gi|2 : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-A--TAACC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATT--AAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNAG-GTTA-CTG---ACACCCCCCC--------CCCCCC-GAT-C-GTC--G-AG-A---CCCG-TA------TGGGAGTG-CATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-A-ATGG--------------G---GATGTGCATTTCAC--AAAAAGTAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGA-C------T-TTAA--TGTTTC-CTTTCTT-CGAACGTGA-TTCAC--A-A-AT-ATTGATA-----AATT----TTTCTTTT-TCA-TCTTGAATGTGTTGATTT--C-----T--G---TTTTAAA-----TTTTTTTAG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTACACG-T--AATT-------ATTA------TTTA--TACTA--GN--NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNTTTG----ATAAA-CACTACAGGGTG-AAAG-AATG-CTAC--AA-TATC----A-ATATATT--GTAC--A---TG--------TA-----ACAACACGA---TTA-AATCTTAATTAAT-AATGC--AA-GT----ATTT-CGACAATATT--TTGTTGCCCCCCCCCC-------------TTTTTTTTAT---AAT------AGCAGGA---TT----------------G-G--------------GGTTA-TAGAAATTATGAATTGAACCCAT---GCATCCAAG--CTCAC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAATGATGC-ACT--ATATCATACCCCCCCTCCCGAATTGTTGTGTTTTTTGTTTTTGTATATATGTACAT-CAAATATTTATTATGTTTTTTATGAAA--TAAGATTTAAAATTTG--TCAATA-TAAAACCTTTTTAGTAGTAAGGTACAT-----GTACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--AAGA----AAGAAGA---G--TGA-AATAT-GGAGAGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCTGTACTTCCC-AGAAATCTGACAGAGCCAAGTGAG--AGGACTCAATTGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGT-GTCAACTCATAAACGTTTATT-ATAGATTT---GA-TAC----A-T-TCCACAGG---CAT--TGTGAC--ATGTCTTTGATTA-TAA-ATTCTTACATCATGTATAC-ACTGTATACATGATGTAAGAATTTATAATCAAGG-ACATATGTT-ATGTTGTTATATTATTACAACATAGGTTTGCT-TTATCATAAATCAC-A-AC------TGAAA-TTTTGAAAA-TCATATTTCATCAG-ATGTTGCT-TT--AACGTCAAA----AACAT-TGCAGCACAATTAATTTATAAGCATA----TATTGTGCCATGGGCAT-GTTGT-TTGGCCAAGT-GA---ACTC--AATTT---TTTATA-GCCTATAACGA-CTACTGTA--T--AACATTATTTGCAAG-AAACAAACCTTTGGTTCTTTTAATGTGT-ATTAATCATGTTAGTA-GT-GGGAGTTACATA---------TATG-T-AATCA-TTAAATTA-----GTCTATCAAAACA-GTCGCTGATGACAAAGTCACTGAAGATTT-TA-ATATCACATTTTCACGTAGACT-GAAG-AATTCT
gi|20 : C--AAAAGATAT-CAC-CGAA-TCAGG-TTAGGCCTTATC---ATCAT-----------TGTTGA--TTTTt
gi|3 : ----ATAAATCACTA--GGGTG-AACTTAACG-TTAC-GAA-TATC----GTGTA-ATC--ATTC--AGCTTGATCCCCACTG-----ATAAC-TGCAC-TT----TTTTGAT-TATCAATTC--AA-GCGGCAATTT--GACAATATT--TTGT-GCCTCCTCCCCCTCCCCTACGGTTTTTTTTTTTC---AATTGAGTAAGCAAGCTAGTTATATAA---AGTGTCAG-GAATTGCA-------GGTTACTAGAA-TTATGAAT-GAATCC-CT--GCATTCAAG--CCCGCGCCCACCCCTT-TTAAAGCATAATTTTTAGCAAACAACGATTTTACTATATAGCCCCCCCGCCCCCCC----------G-------------CGCCTACTTGCA----GAT---TATTAT-T--------GGA--TAAGATATAGCATTTGGTTCAATGCTAAAAGCTTTTTAG----------------------AATTTTCA-ACTAAACAAATTCGTCTAACAATTCCTTTTTCTGAGACAGATTGAAAGAAAAG--A--TGATAATATTGAAGCTGATACCCTGTTTTTGATTTCAAGGGTGGCAATAGTAGTATCA--ACTTTCCGAGGAA--TGACAGAGCC-AGCGAG--AGG--TCAATCAAGA-TGCACAGCTGGTACCGAAAACTTGGCATGCGGTCCTCGTCAACTCAT-AACG-TTATTCATATAATTATGGA-TACAATTATT-TCGAAAGGTCCCATACCAT-ACATATGTCTTTGATTATTAAGATTCTTTCAGCATGCATGCAACATTA-GC-TT-TGTTTTAACTTAT-ATAAA-ATACAGATG-GAATA-TGTTA-A----AACAA-ATA--TTT--T-TCAT--TAAGAC-C-A-AG-T----GG----TT---AGAAT--AGA-TTGAACAACA--TCCTT-TT--GCA-TC-AA----AGCAC-TGCAGCG----TAATTTA-AGGGGTGGGGTTATTGT----TGGCTCTAGTCGTATTGGCCAAGTAGAGGTACTCTTAATTTT-ATTTATAGGCCTA-AATAA--TAC---A--AA-AACACC-CTAAC---AAAACTACCGTTAGGT--TTATTATGTTT-ATTTATCATA--AGTACAT-GCAAGTTACATACA--ACACTCATC-ACAA--ACTTAA--TAGTCCTGTCTATTAAAAAAGGTCACTAAAGAAATAATCAC-----A-TCATACATGCTCCA-TTTCACGTAGACTGGAAG-AATTC
gi|4 : CAAACGCAAG-C-AACCGGGTT---TT-CCCG---TT-T--GAATTTT--G-TGCACGG-TT----TATGGG-G-GATTA-CC--GAAA-A-CGCCCTTGATCGAGAGAT-AGA-CGC-TTG--ACGTCAA--GA-CA-AA--TG-----GA-ACA----------CTGGTGTG---T-------GT-A-------CACAT---CG-T---TG-TTG-GT-----------TTGG-----GGG---C-GTAAGACC--AAGTTTTCC-T--GTTC-AAATT---CAGG-AA-TA--CACCTAAA-TGGA--A-AGTAGCCCT-GGGCTGGATTT-AACCGGAACACGGGAACGG---TGGATT--ATTTGAGTCTGTGAT-A--ATGATAGAGGCA-GTGTGTACACACCCCA--------AATCTA-AAT-C-G----G-AGGA---CCCA-TGGTTG-TTG--AATGTC-TTC--GTGTTGCTAA-TA--ANNNNNNNNNNNNNNNNNNNNNNNNNTAGACCC------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---AAC--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGAAAAAGG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCAATC---ATCATCGATCTGATAATGTTAAATTGTTTC-CTTCTTT-CGAACGTGA-TTCACATATA-ATAATGGATA-----AATTAAAATC-TTTTT-CCAATCTTG-ATGTGTTGATTT--TCTGGGT--G---TTTTAAA------------AA--GCAAAT-----ACTAAAATA-GGGGTATTCATTGTAT--G-TTAAATTC---AATATTACAcctttgctcctgccccacactaacattcatatttggaatcgccgcacgtccaatacccgctggaccagcaccagagcaatgatctgtagtagaaaagcggaatttcatagaacaacgacctgaaataatcgtgcattcaa
gi|5 : AC-CA-G-C-A-CCG---T---TT-CCGG---TT-TTTGAATTTT-AGAT-CACG----------------------------AAA-ATCGC--TTGATCGT--GAT-AGA-CGC-TTG--ACGT--A--AATCA-AAGTTG----GAA-ATAT---------CTG---TGGTGT-------GTCA-------CACATATATG-T---TG-TTGCGT-----------TTGG-----G-----C-GTAA---C--AAGTTT-CC-A--A--C-GA------TAGG-AATAC--CACTTAAAATGGC--A-GG-----CTTGG--TG-ATTTTAAT-GGACTACG-----GGAACCGGTTT--ATTTG-GTCATGTAT-ATATTGATAG-TAGG-GTG---AAACCTCACC-------------GTAGTAC-GTC--GGAG-A---CCC-----------------------C--GTGTT-------------------------------------AGACCAGGGTATCTA--ATAATAAT--TA-CAGACAGATA--TA-CG-GTCCC-TTGA-CTATGGGAAT-GGAT-GTGGA-C--ATGTAAAACACAAAAGAAGTTC-ATGG--------------G---GAT-TGCATTTCACCCAAAAGATATTCAC-TAAA-TCAGG-TTAGGCCCTCTC---ATCATCGATC------TGTATA--CCTTTC-CTT-TTT-CGAACGTGAGTTCAC--TAA-AT-ATGGATA-----AAGT----TT-TTTCT-TCATTCTTG-ATGTGTTGATTT--C-----T--GGGTTTTTAAAATCCTTTTTT--AG--GCGACAGCTATACTAAAAT--GGGGTA--Ct
gi|6 : atAAAC-CA-G-C-A-CCG---T---TTTCCGG---TT-TT-GAATTTT-AG-T-CACGGTTT----TATGGG-G-G---A-TC--GAAAGA-CGC--TTGA-CG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---T--A-ATA----------CTG---TTG--T-------GT-A-------CACAT---CGAT---TGTTTG-GT-----------TTGG-----GG----C-GTAA---CA-AAGTTC-GC-T--A----AAAT-----AGG-AA-TA--CAC-TAAAATGGA--AGGG-----CT-GG--TG-ATTT-AAC-GAACAACG----GAA---CGGTTGAAATTT--GTCGT-AATAATGATAGTAG-GGGT-GTA---ACA------C--------CCCCCA-AAT-C-ATC--G-AG-A---CCCG-TG---G-TTGTGAATGTCATTTCGGTGTTGCTACGTA--AA------------------------TAGACC-------CTA-TATTATAATTATA-CAGACAAATA--TAATGCGTCCC-T--GCC-ATGGGAATGGGAT-GA--A-C--A---T-AAAACAAAAGAAGT-C-G-GGAATCCA-GGAAAAAG---GATGT-CATTTCAC--AACCG-TAT-CAC-GAAA-TCAGGCTTAGGCCC--TC---ATC
gi|7 : C--------CCTTCG-TAT-CTGAG--G-AG-AACCCCTG-TGGT-CCTTGAAAATGTCATAC--GTGATGCTAT-TA--AA------------------------TAG--CAT-----CTACTATAATACT--TA-CAGAAAAAAAAATATCT-GTTCC-T--G-T-----GAAA-GGAT-GG--A-C--T---GGAAATCAAAAGAAGC-C-ATGGAATCCGGGGGAAAAG---GATGTACATTTCAC--AAAAGACAT-CAA-CGAA-TCAGG-TTAGGCCCTATCCCTATAATC-AT-------TGTTGA--TGTTTTACTTCTTT-CGAATGTGA-TTCAT--AT--CT-ATTGATATTGTTTTTT----TT-CTTTT-TCATTCTTGAATGTTTTATTTT--C-----TGGG---TTTTAAAAATC-TTTTC--AGGTGCAGCT-----ACTAAAAT--GTGTT----A-TGT-T--G-T---ATTCTTGAA-ATTACACAGC--CAGGTAATATTGATTGAGAGAGAGA-GAGAGAGAGAGA
gi|8 : tagtaatgatagtaagggtctatacagtaccgatACATAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTG-AG-T-CACGG-TTGGGGGGGGGG-G-G--TA-CC--GAGA-A-CAC--TTGATTA---GATAAGA-CGC-TTGGAACGT--A--AA-CA-AA--GG---TGAA-ATC----------CTG---G----T-------GT-GTAC----CACTT---TG-T---TG--TG-G-------------TGG-----GGTTACT-GTA-------AAGTTT-TC-CAAA--C-AAAT----CAGGTAA-ATA-CACTTGAAATGGA--G-GG-----TT-GG--TG-ATTT-GAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNNN-NNN---NNNNNNNNCCAATCCCTACCCCTG-TAT-C-GTCG-G-AG-A---CCTG-TAGTCT-TTGAGAATGCCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCC------CTACTATGATAAT--TA-CAGACAAA
gi|9 : ------TGTTAA--TGTTTC--TTCTTTACAGGAGTGA-TTCA-------AC-AT--ATA-----A--------T-CTTTTGTCAGTCTTGAATGTGTTGATTTTCT-----T--G---TGTTAAA------------------AGCA-----ACTAAAATGGGGGGTA--CA--GTAT--G-T--ATTTC---AATA-TACACA-CTTCAGGT-ANN--NN--NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN----NNNNNNCATTACA-GGTG-AAAG-AATG-CTAC-AAA-TATC------ATATATT--GTAC-------G--------GC-----ACAAT-CCAAA-TTACAATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTCTACTACATAGCCCCCCCCCCCCCCCACACCAATTGAAATTATTTCAGTTGTGGCAAATTAAAGATTTTGTTTTGCAAAATTTAGGAT
Unaligned ( gi|21 ): GGGAGAAATGGACCAGCGAGAGCCCAGTTGGAATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 11111 11111 111 11 1111 2222222222 666666666666666666666666666 111 22222222222222 11111111111 111111 111111111111111111 22222 11111 2222222222 11 11111111111 111111 111 111111111111111 11 111 44444 555555555555555555555555 2222222 222222222222 111 111 22222222 2222222 3333333333333 222222222222222 4444444444444444 11111 11 11 111 111 1 111111 1 1111 11 3333333 11 77777777777777777777777 11 11 1 11 1 2222 11 22 1 7777777777777 222 555555555555555555555555555555555555555555555555555 1 44444 1 11 11 1 222 222 1 22 0000000000000000000000000 4444444444 5555555555555555 11 1111 888888888888888888888888 1 1 11 2222 22222 11 1 1 1 1 222 1 33333333 222 111 1 2 1 4444444 11 999999999999999999999999999999999999999999999 22222222222 111 333333 1 1 22222222222 111 2222 1 1111111 2222 22 1 1 1 222 11 22 1 22 33333 1111 1 1 1 4444444444444444 1 33333 1 1111111 2222 1 1 1
lowQualScore : 5 5 5 5 5 888 888 5 888 5 0 5 5 5 5 00000 3 5 11111 5 66 5 5 66 333 5 5 5 66 66 66 5 5 11 2222 5 6666666666 444444444444444444444444444 3 888 5 777 5 99999999999999 44444444444 4 111111 4 888888888888888888 4 00000 0 2 1 7777 11111 4 66 4 66 99 00 6666666666 0 888 00 00000000000 111111 000 888888888888888 666 5 5 1 33 5 5 000 5 11111 8 3 1 77 1 5 77 555555555555555555555555 7777777 4 77 5 888 1 5 5 77 5 5 5 5 888888888888 0 5 5 5 6 1 1 111 2 1 77 0 5 5 5 5 1 000 2 22222222 77 6 1 6 6 6666666 6 6 2222222222222 6 6 7 7 2 777777777777777 9999999999999999 2 66666 55 99 88 0 11 8 777 444 5 0 0 3 2 3 666666 8 0 22 7777 7 6 6 6 0 6 11 6 6666666 11 00000000000000000000000 8 1 999 33 0 99 0 33 0 1111 22 8 55 0 888 3333333333333 333 555555555555555555555555555555555555555555555555555 3 7 7 1 55555 2 88 0 88 3 333 333 0 3 00 1 6 0000000000000000000000000 0 0000000000 7777777777777777 88 4444 555555555555555555555555 3 3 33 1111 55555 8 8 666 8 5 0 5 4 666 8 0 6 11 0 6 8 8 0 0 0 2 7 7 3 7 333 3 11111111 333 999 6 7 7 7 3 6 3 7777777 11 111111111111111111111111111111111111111111111 11111111111 3 111 444444 3 0 9 66 0 1 88888888888 444 2 3 1111 0 8888888 7 0 8888 55 3 0 3 3 333 88 00 3 7 00 7 88888 1 88 2222 7 3 7 3 3 4444444444444444 7 2 7 33333 7 3 0 7 4444444 0000 3 7 6 3 3
lowQualScore : . . . . . ... ... . ... . . . . . . ..... . . ..... . .. . . .. ... . . . .. .. .. . . .. .... . .......... ........................... . ... . ... . .............. ........... . ...... . .................. . ..... . . . .... ..... . .. . .. .. .. .......... . ... .. ........... ...... ... ............... ... . . . .. . . ... . ..... . . . .. . . .. ........................ ....... . .. . ... . . . .. . . . . ............ . . . . . . . ... . . .. . . . . . . ... . ........ .. . . . . ....... . . ............. . . . . . ............... ................ . ..... .. .. .. . .. . ... ... . . . . . . ...... . . .. .... . . . . . . .. . ....... .. ....................... . . ... .. . .. . .. . .... .. . .. . ... ............. ... ................................................... . . . . ..... . .. . .. . ... ... . . .. . . ......................... . .......... ................ .. .... ........................ . . .. .... ..... . . ... . . . . . ... . . . .. . . . . . . . . . . . . ... . ........ ... ... . . . . . . . ....... .. ............................................. ........... . ... ...... . . . .. . . ........... ... . . .... . ....... . . .... .. . . . . ... .. .. . . .. . ..... . .. .... . . . . . ................ . . . ..... . . . . ....... .... . . . . .
lowQualScore : 0 0 0 0 0 888 888 0 888 0 0 0 0 0 0 99999 1 0 11111 0 99 0 0 99 888 0 0 0 99 99 99 0 0 99 0000 0 9999999999 444444444444444444444444444 4 888 0 555 0 00000000000000 11111111111 4 111111 4 333333333333333333 4 88888 8 4 8 6666 11111 4 11 4 44 66 77 3333333333 4 000 66 99999999999 000000 000 555555555555555 777 7 7 7 66 7 7 000 7 11111 6 6 4 99 4 7 99 000000000000000000000000 0000000 3 99 7 999 7 7 7 99 7 7 7 7 666666666666 1 7 7 0 6 7 5 777 5 0 99 1 7 7 7 7 7 000 5 11111111 99 7 0 7 7 8888888 7 7 8888888888888 7 7 5 3 5 222222222222222 5555555555555555 5 77777 88 22 88 8 00 0 000 000 6 8 0 2 5 2 222222 0 0 00 0000 6 7 7 7 7 7 88 7 3333333 00 44444444444444444444444 0 4 444 66 8 88 0 88 0 2222 55 8 55 0 777 3333333333333 333 000000000000000000000000000000000000000000000000000 3 3 3 0 33333 0 33 7 33 3 333 333 7 3 77 0 7 0000000000000000000000000 7 7777777777 0000000000000000 33 0000 777777777777777777777777 3 3 88 2222 22222 0 0 888 0 6 6 6 0 666 0 8 4 00 8 4 0 0 8 0 0 0 3 3 3 3 333 3 00000000 333 000 7 3 3 3 3 7 3 0000000 00 444444444444444444444444444444444444444444444 55555555555 2 000 555555 2 0 8 55 0 0 88888888888 555 5 2 2222 0 3333333 3 7 3333 33 3 7 3 3 333 33 77 3 3 00 3 77777 0 33 0000 3 3 3 3 3 0000000000000000 3 0 3 33333 3 3 7 3 0000000 3333 3 3 7 3 3
consensus : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGATCACG----CGG---CGGTTT--ATTTGAGTCNTNNAT-ATGATGATAG-GGNA-GTG---ACACCCCCCC--------CCCCCG-AAT-C-GTC--G-AG-A---CCCG-TGGT-G-TTGNGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATA-AT-ATGGATA-----AATT----TT-CTTTT-TCANTCTTGAATGTGTTGATTT--C-----T--G---TTTTAAA-----TTTTT--AG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--G-T--AATTC---AATATTACACA-CTTCAGGTAATA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATC----A-ATATATT--GTAC--A---TG--------TN-----ACAAC-CGAAA-TTA-AATCTTAAT-AAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTGT-GCCCCCCCCCC-------------TTTTTTTTTT---AATT-----AGCAGGA-AGTTA-ACAA---AGTG-CAG-GA--TGCA-------GGTTA-TAGAAATTATGAATTGAANCC-C---GCATCCAAG--CTCGC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAACGATGC-ACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------CGTATACGTACAT-C-GATA--TATTAT-TTT------GAA--TAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAAG-----T-----G-ACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAG--G--TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TAC----ATT-TCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTTCA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-CGTTA-A----TACAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTNATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-A-AATCACTTAAATTA-----GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TT-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
Reference ( family-1663 ) : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGATCACG----CGG---CGGTTT--ATTTGAGTCNTNNAT-ATGATGATAG-GGNA-GTG---ACACCCCCCC--------CCCCCG-AAT-C-GTC--G-AG-A---CCCG-TGGT-G-TTGNGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATA-AT-ATGGATA-----AATT----TT-CTTTT-TCANTCTTGAATGTGTTGATTT--C-----T--G---TTTTAAA-----TTTTT--AG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--G-T--AATTC---AATATTACACA-CTTCAGGTAATA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATC----A-ATATATT--GTAC--A---TG--------TN-----ACAAC-CGAAA-TTA-AATCTTAAT-AAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTGT-GCCCCCCCCCC-------------TTTTTTTTTT---AATT-----AGCAGGA-AGTTA-ACAA---AGTG-CAG-GA--TGCA-------GGTTA-TAGAAATTATGAATTGAANCC-C---GCATCCAAG--CTCGC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAACGATGC-ACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------CGTATACGTACAT-C-GATA--TATTAT-TTT------GAA--TAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAAG-----T-----G-ACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAG--G--TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TAC----ATT-TCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTTCA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-CGTTA-A----TACAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTNATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-A-AATCACTTAAATTA-----GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TT-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
gi|1 : AAAC-CA-G-CTA-CCG---T---TT-CCGG---TT-TTTGAATTTTTAG-T-CACGG-TT----TATGGGTG-A--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGACCGC-TTG--ACGT--A--AA-CA-AAT-TG---TGAATATACTCATATTACCTG---TCAC-T-------GT-GACTGT--CATCT---TG-TGTCTG-TTGTGTACACATCGTTGTTGGTTTGGGG----CCGTTA---C--AAGTTT-CCTT--A--C-AAAT----CAGG-AA-ATA-CATTT----T--------------TT-GG--TG-ATTT-AACGGGAANNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNNN-NNA---ACA-----AC--------CCCCCA-AAT-C-ATCTGG-AG-A---CCCGCTG---G-TTGTGAATGTCATTC---TGTTGC--C-TAATAA------------------------TAGACCA------TTACTAAATTAAT--TACCAGACAAAAT--TAACG-GTCCCTT--G-C-ATGGGAAT-GGATGG---A-CAGA---GAAAAACAAAAGAAGA-CAATGGAATCCAAGGAAAAAGGAAGATCTGCATTTCAC--AAAAGATAT-CACATAAATTCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATATAT-ATGGATA-----AATTAA--AT-CTTTT-TCAATCTTGAATGT-TTGATTT--G-----T--G---GTTT--G-----TTTTT--AA--A-AGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--GAT--TATTC---AATATTACACA-CTTCAGGTAAGA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGAGAGAGGCAGAGAGCACTACA-GGTGAAAAG-AATG-CTAC-CAA-TATC-------TATATT--GTAC--A---T---------TC-----ACAAC-CAAAATTTC-AATCTTAAT-AAT-AATGCGAAG-GT----ATTT-CAA-AATATTATTTGT-G-----CCCCC-------------TTTTTTTTTTATAAATT----------GA-AGTTA-ACAAATTAATG-CAGCAA--TGCAGATGTTGGGTTA-TAGAAATTATAAATTGAAAAC-CATGGCAT-CAAGGACTCAC--CCACCCCATATTAAGA---AATTTTGAG---ACAATGATGC-ACTA-ATAACATA--CCCCCCCCC----------ATTTTTT-------TGTATATGTATATCC-AATA--TATTA--TTT------GAAATTAAGATTTAAAAATTG--TCA--TCTAAAACCTTTTT--TAGTAAG-----TTAAGGG-ATCACTTTCATCCCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAGGAG--TGA-AATAT-GGAGCGGAAA-CC-GCTTTTG-TGTCAAGGGTGGCAATATTAAAATCAGTACTTACC-AGGAATCTGACAGGTCCGAGTGAGAAAAGACTCAATC-AGACTGCACA-T--G-ACC-AAAATATGACATCCGCCCGTTGTCAACTCTTAAACGTTTATT-ATAG-ATT---GATTAC----ATTATCCAAAGG---CAT--TGTGACATATGTCTT--GTTATTAA-ATTCCCTTA-AATGTATAC-ACTGTA---ATGTTGTTATA--TTATA--C---A-ACAT----T-A-G-CTTTG-G----T----------TTT--A-TTA---TAAATCAC-A-ACTT----TGAAATTTTTGAAAATTCATA-TCAATTA---------T-TTAAAAAGTAAAA----AACATGTGCAG-GCAA--AATTTATAGGCATA----TATTGT-TCATGGGCCT-GTTGT-TTGGCCAAGT-GA---ACTG--AATTTTCATTTATA-GCCTATAACGACCTACTGTATTTATAACAATAAAAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTTAATTAATCATGTTAGTA-GTGGGAAGTTACATACGATACAT-CATCAA-AATCATTTAAATTA-----GTCTATC-AAAAA-GTCACTGATGACAAAGTATATGAAGA-TT-CA-AT---TCA-T---A---AAACT-GAAGAAATTCT
gi|10 : aca-CA-GAC-A-CCG---TGTATT-CCGGCGTTTATT-GATTCTT-AG-T-CACGG-TG----TA-GGG-G-G--TA-CCTGGAGA-A-CGC--TT-ATCG---GAT-CGA-CGCTTTT--AAGT--ACTAA-CATAA--TGGGCTGAG-ATA----------CTG---T----T-------GC-ATGGATACCAC-T---TA-TGAGTG-CTGCCT-----------TCGG-----AG----G-GTCA---CAAAAGTTC-CC-CGGA--CTGAATATCGCAAG-AA-ATTACACTTAAAATGGAGGA-GG-----TT-GG--CA-ATTT-AAT-GTATcctgttgtgcatcttggtctatacttgggaatgcagtattggataaagtggtccaatagttcatcatgtatagaaaagggtaacttcagggaaatctgaaatgagtttgaaagtgcattcaa
gi|11 : cgC-CA-G-C-A-CCG---T---TT-CCGG---TT-TC-AAATTTT-AG-T-CACGG-TT----AATGGG-GTA--TA-CC--GAGA-A-CGC--TTGATCA---GTT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--GG---TGAA-ATA----------CTG---G----TGTGTACAGT-A-------CATAT---TG-C---TG-TTG-GT-----------TT-G-----GA----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-GTA-CACTTGAAATGGA--G-GG-----CT-GG--TG-ATTG-AAT-GGATCAC
gi|12 : CATTTTTGTGA--CAGA----AAGAAGAG--GAGTGA-CATAT-GGAGCGAA--------------TTCCAAGGATGGCAATATTAAGATCAGTACTTCCC-AGGAATCTGACAGAGCGAAGTGAG--AGGATTCAATCGAGA-TGCACA-CTGG-ACC-AAAaa
gi|13 : --TTT--TATCAT---AAATCACTATAC-TATCATGAAA-TTATGAAAATTCATG-TTCATCAG-A--TCGTTATT--CAAGTCAGACAATGACAT-TGCAGTACAA-
gi|14 : ttaaattatgaacatagctttgttcaaactgcCACTACAGGGTG-AGAA-AGTGTCTACAGAAGTATC----A--TATATTAGGTACCAA---CG--------TTTTTCGACAAC-CAAAA-TTA-AATCTTCAT--AT-AATGC--AATGT----ATTTGCAAAAATATCA-TTGT-G
gi|15 : GG-----GG----C-GTAA---C--AAGTTT-CC-T--A---------------G-AA-AT--CA-------TGGA--A-GG-----CT-GG--TG-ATTA-AAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNTACGTG---TAACCCCCCC--------CCCCCgc
gi|16 : cAGAGGAG-----TGA-AATAT-GGAGTGGAAACCC-GCCTTTGATGTCAAGGGTGGCAATA------------CTTCCC-AGGAATCTGACAGAGCAGAGTGAG--AAGACTCAATCAAGA-TGCACA-CTc
gi|17 : TG----ATAAATCACTACAGGGTG-AAAG-AACG-TTAC-G-A-TATCGTGTA-ATAT
gi|19 : ta--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-GG--A-C--G---AAAAAACAAAAGAAAT-C-ATGGAATCCAGGAAAtcagcttgatccccactgtaactgcaactttttattatcaattcaacgcaattt
gi|2 : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-A--TAACC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATT--AAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNAG-GTTA-CTG---ACACCCCCCC--------CCCCCC-GAT-C-GTC--G-AG-A---CCCG-TA------TGGGAGTG-CATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-A-ATGG--------------G---GATGTGCATTTCAC--AAAAAGTAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGA-C------T-TTAA--TGTTTC-CTTTCTT-CGAACGTGA-TTCAC--A-A-AT-ATTGATA-----AATT----TTTCTTTT-TCA-TCTTGAATGTGTTGATTT--C-----T--G---TTTTAAA-----TTTTTTTAG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTACACG-T--AATT-------ATTA------TTTA--TACTA--GN--NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNTTTG----ATAAA-CACTACAGGGTG-AAAG-AATG-CTAC--AA-TATC----A-ATATATT--GTAC--A---TG--------TA-----ACAACACGA---TTA-AATCTTAATTAAT-AATGC--AA-GT----ATTT-CGACAATATT--TTGTTGCCCCCCCCCC-------------TTTTTTTTAT---AAT------AGCAGGA---TT----------------G-G--------------GGTTA-TAGAAATTATGAATTGAACCCAT---GCATCCAAG--CTCAC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAATGATGC-ACT--ATATCATACCCCCCCTCCCGAATTGTTGTGTTTTTTGTTTTTGTATATATGTACAT-CAAATATTTATTATGTTTTTTATGAAA--TAAGATTTAAAATTTG--TCAATA-TAAAACCTTTTTAGTAGTAAGGTACAT-----GTACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--AAGA----AAGAAGA---G--TGA-AATAT-GGAGAGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCTGTACTTCCC-AGAAATCTGACAGAGCCAAGTGAG--AGGACTCAATTGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGT-GTCAACTCATAAACGTTTATT-ATAGATTT---GA-TAC----A-T-TCCACAGG---CAT--TGTGAC--ATGTCTTTGATTA-TAA-ATTCTTACATCATGTATAC-ACTGTATACATGATGTAAGAATTTATAATCAAGG-ACATATGTT-ATGTTGTTATATTATTACAACATAGGTTTGCT-TTATCATAAATCAC-A-AC------TGAAA-TTTTGAAAA-TCATATTTCATCAG-ATGTTGCT-TT--AACGTCAAA----AACAT-TGCAGCACAATTAATTTATAAGCATA----TATTGTGCCATGGGCAT-GTTGT-TTGGCCAAGT-GA---ACTC--AATTT---TTTATA-GCCTATAACGA-CTACTGTA--T--AACATTATTTGCAAG-AAACAAACCTTTGGTTCTTTTAATGTGT-ATTAATCATGTTAGTA-GT-GGGAGTTACATA---------TATG-T-AATCA-TTAAATTA-----GTCTATCAAAACA-GTCGCTGATGACAAAGTCACTGAAGATTT-TA-ATATCACATTTTCACGTAGACT-GAAG-AATTCT
gi|20 : C--AAAAGATAT-CAC-CGAA-TCAGG-TTAGGCCTTATC---ATCAT-----------TGTTGA--TTTTt
gi|3 : ----ATAAATCACTA--GGGTG-AACTTAACG-TTAC-GAA-TATC----GTGTA-ATC--ATTC--AGCTTGATCCCCACTG-----ATAAC-TGCAC-TT----TTTTGAT-TATCAATTC--AA-GCGGCAATTT--GACAATATT--TTGT-GCCTCCTCCCCCTCCCCTACGGTTTTTTTTTTTC---AATTGAGTAAGCAAGCTAGTTATATAA---AGTGTCAG-GAATTGCA-------GGTTACTAGAA-TTATGAAT-GAATCC-CT--GCATTCAAG--CCCGCGCCCACCCCTT-TTAAAGCATAATTTTTAGCAAACAACGATTTTACTATATAGCCCCCCCGCCCCCCC----------G-------------CGCCTACTTGCA----GAT---TATTAT-T--------GGA--TAAGATATAGCATTTGGTTCAATGCTAAAAGCTTTTTAG----------------------AATTTTCA-ACTAAACAAATTCGTCTAACAATTCCTTTTTCTGAGACAGATTGAAAGAAAAG--A--TGATAATATTGAAGCTGATACCCTGTTTTTGATTTCAAGGGTGGCAATAGTAGTATCA--ACTTTCCGAGGAA--TGACAGAGCC-AGCGAG--AGG--TCAATCAAGA-TGCACAGCTGGTACCGAAAACTTGGCATGCGGTCCTCGTCAACTCAT-AACG-TTATTCATATAATTATGGA-TACAATTATT-TCGAAAGGTCCCATACCAT-ACATATGTCTTTGATTATTAAGATTCTTTCAGCATGCATGCAACATTA-GC-TT-TGTTTTAACTTAT-ATAAA-ATACAGATG-GAATA-TGTTA-A----AACAA-ATA--TTT--T-TCAT--TAAGAC-C-A-AG-T----GG----TT---AGAAT--AGA-TTGAACAACA--TCCTT-TT--GCA-TC-AA----AGCAC-TGCAGCG----TAATTTA-AGGGGTGGGGTTATTGT----TGGCTCTAGTCGTATTGGCCAAGTAGAGGTACTCTTAATTTT-ATTTATAGGCCTA-AATAA--TAC---A--AA-AACACC-CTAAC---AAAACTACCGTTAGGT--TTATTATGTTT-ATTTATCATA--AGTACAT-GCAAGTTACATACA--ACACTCATC-ACAA--ACTTAA--TAGTCCTGTCTATTAAAAAAGGTCACTAAAGAAATAATCAC-----A-TCATACATGCTCCA-TTTCACGTAGACTGGAAG-AATTC
gi|4 : CAAACGCAAG-C-AACCGGGTT---TT-CCCG---TT-T--GAATTTT--G-TGCACGG-TT----TATGGG-G-GATTA-CC--GAAA-A-CGCCCTTGATCGAGAGAT-AGA-CGC-TTG--ACGTCAA--GA-CA-AA--TG-----GA-ACA----------CTGGTGTG---T-------GT-A-------CACAT---CG-T---TG-TTG-GT-----------TTGG-----GGG---C-GTAAGACC--AAGTTTTCC-T--GTTC-AAATT---CAGG-AA-TA--CACCTAAA-TGGA--A-AGTAGCCCT-GGGCTGGATTT-AACCGGAACACGGGAACGG---TGGATT--ATTTGAGTCTGTGAT-A--ATGATAGAGGCA-GTGTGTACACACCCCA--------AATCTA-AAT-C-G----G-AGGA---CCCA-TGGTTG-TTG--AATGTC-TTC--GTGTTGCTAA-TA--ANNNNNNNNNNNNNNNNNNNNNNNNNTAGACCC------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---AAC--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGAAAAAGG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCAATC---ATCATCGATCTGATAATGTTAAATTGTTTC-CTTCTTT-CGAACGTGA-TTCACATATA-ATAATGGATA-----AATTAAAATC-TTTTT-CCAATCTTG-ATGTGTTGATTT--TCTGGGT--G---TTTTAAA------------AA--GCAAAT-----ACTAAAATA-GGGGTATTCATTGTAT--G-TTAAATTC---AATATTACAcctttgctcctgccccacactaacattcatatttggaatcgccgcacgtccaatacccgctggaccagcaccagagcaatgatctgtagtagaaaagcggaatttcatagaacaacgacctgaaataatcgtgcattcaa
gi|5 : AC-CA-G-C-A-CCG---T---TT-CCGG---TT-TTTGAATTTT-AGAT-CACG----------------------------AAA-ATCGC--TTGATCGT--GAT-AGA-CGC-TTG--ACGT--A--AATCA-AAGTTG----GAA-ATAT---------CTG---TGGTGT-------GTCA-------CACATATATG-T---TG-TTGCGT-----------TTGG-----G-----C-GTAA---C--AAGTTT-CC-A--A--C-GA------TAGG-AATAC--CACTTAAAATGGC--A-GG-----CTTGG--TG-ATTTTAAT-GGACTACG-----GGAACCGGTTT--ATTTG-GTCATGTAT-ATATTGATAG-TAGG-GTG---AAACCTCACC-------------GTAGTAC-GTC--GGAG-A---CCC-----------------------C--GTGTT-------------------------------------AGACCAGGGTATCTA--ATAATAAT--TA-CAGACAGATA--TA-CG-GTCCC-TTGA-CTATGGGAAT-GGAT-GTGGA-C--ATGTAAAACACAAAAGAAGTTC-ATGG--------------G---GAT-TGCATTTCACCCAAAAGATATTCAC-TAAA-TCAGG-TTAGGCCCTCTC---ATCATCGATC------TGTATA--CCTTTC-CTT-TTT-CGAACGTGAGTTCAC--TAA-AT-ATGGATA-----AAGT----TT-TTTCT-TCATTCTTG-ATGTGTTGATTT--C-----T--GGGTTTTTAAAATCCTTTTTT--AG--GCGACAGCTATACTAAAAT--GGGGTA--Ct
gi|6 : atAAAC-CA-G-C-A-CCG---T---TTTCCGG---TT-TT-GAATTTT-AG-T-CACGGTTT----TATGGG-G-G---A-TC--GAAAGA-CGC--TTGA-CG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---T--A-ATA----------CTG---TTG--T-------GT-A-------CACAT---CGAT---TGTTTG-GT-----------TTGG-----GG----C-GTAA---CA-AAGTTC-GC-T--A----AAAT-----AGG-AA-TA--CAC-TAAAATGGA--AGGG-----CT-GG--TG-ATTT-AAC-GAACAACG----GAA---CGGTTGAAATTT--GTCGT-AATAATGATAGTAG-GGGT-GTA---ACA------C--------CCCCCA-AAT-C-ATC--G-AG-A---CCCG-TG---G-TTGTGAATGTCATTTCGGTGTTGCTACGTA--AA------------------------TAGACC-------CTA-TATTATAATTATA-CAGACAAATA--TAATGCGTCCC-T--GCC-ATGGGAATGGGAT-GA--A-C--A---T-AAAACAAAAGAAGT-C-G-GGAATCCA-GGAAAAAG---GATGT-CATTTCAC--AACCG-TAT-CAC-GAAA-TCAGGCTTAGGCCC--TC---ATC
gi|7 : C--------CCTTCG-TAT-CTGAG--G-AG-AACCCCTG-TGGT-CCTTGAAAATGTCATAC--GTGATGCTAT-TA--AA------------------------TAG--CAT-----CTACTATAATACT--TA-CAGAAAAAAAAATATCT-GTTCC-T--G-T-----GAAA-GGAT-GG--A-C--T---GGAAATCAAAAGAAGC-C-ATGGAATCCGGGGGAAAAG---GATGTACATTTCAC--AAAAGACAT-CAA-CGAA-TCAGG-TTAGGCCCTATCCCTATAATC-AT-------TGTTGA--TGTTTTACTTCTTT-CGAATGTGA-TTCAT--AT--CT-ATTGATATTGTTTTTT----TT-CTTTT-TCATTCTTGAATGTTTTATTTT--C-----TGGG---TTTTAAAAATC-TTTTC--AGGTGCAGCT-----ACTAAAAT--GTGTT----A-TGT-T--G-T---ATTCTTGAA-ATTACACAGC--CAGGTAATATTGATTGAGAGAGAGA-GAGAGAGAGAGA
gi|8 : tagtaatgatagtaagggtctatacagtaccgatACATAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTG-AG-T-CACGG-TTGGGGGGGGGG-G-G--TA-CC--GAGA-A-CAC--TTGATTA---GATAAGA-CGC-TTGGAACGT--A--AA-CA-AA--GG---TGAA-ATC----------CTG---G----T-------GT-GTAC----CACTT---TG-T---TG--TG-G-------------TGG-----GGTTACT-GTA-------AAGTTT-TC-CAAA--C-AAAT----CAGGTAA-ATA-CACTTGAAATGGA--G-GG-----TT-GG--TG-ATTT-GAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNNN-NNN---NNNNNNNNCCAATCCCTACCCCTG-TAT-C-GTCG-G-AG-A---CCTG-TAGTCT-TTGAGAATGCCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCC------CTACTATGATAAT--TA-CAGACAAA
gi|9 : ------TGTTAA--TGTTTC--TTCTTTACAGGAGTGA-TTCA-------AC-AT--ATA-----A--------T-CTTTTGTCAGTCTTGAATGTGTTGATTTTCT-----T--G---TGTTAAA------------------AGCA-----ACTAAAATGGGGGGTA--CA--GTAT--G-T--ATTTC---AATA-TACACA-CTTCAGGT-ANN--NN--NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN----NNNNNNCATTACA-GGTG-AAAG-AATG-CTAC-AAA-TATC------ATATATT--GTAC-------G--------GC-----ACAAT-CCAAA-TTACAATC
blockSeqs : G A A . A GGT GTA T CGT A T . A G T GGGGG T . GATT A TG G T CC AGA A . T GA CA CT T T GT GGCT . T TTGCATGGATAC A ATA A GAG T CCT GGTTAC . GACC T CGGACTGAATATCGC T ATTA A A GGA TAGCC T GC G TT CC GGAACGG GAA NN NNNNNNNNNN NNTAC TGT NNNNNCCAATCCCTA GTA A T T G G G ACC . GTTG G T A CG T G . NNNNNNNNNNNNNNNNNNNNNNNN AGGGTAT C TA . AAA A C . TG C T G . TGGACATGT T . A G A G . G G CC T . . C T CCT G TCTGATAA AT A T A G CATATA A T TTGTTTTTT T G A A G TCTGGGTG AATCTTTTCAGGT C GCTAT GG TT TT AC . TAA TTG T G T G A TTGATT N A TT . T G . T T AG G GTGTAA AG AGCTTGATCCCCACTG A A AA AC TA C . T GGCA GC A A T CCC CTCCCCTACGGTT . TGAGTAAGCAAGCTAGTTATATAAAGTGTCAGGAATTGCA C A T C AT C . GC . CAT CAA T AT T C GAATTGTTGTGTTTTTTGTTTTTGT TCAAATATT TGTTTTTTATGAAA GT ATGC AGTAGTAAGGTACATGTAC . A GA TTGA GAG T T AAC T A T G AGT G A . G . G T G C A T C A ATG . AATTATT TCC ACC G A T T G T A TACATGA AT AATCAAGGACATATGTTATGTTGTTATATTATTACAACATAGG GCTTTATCAT A TAT TATCA A . A TT T C GATGTTGCT C G A CAAT . CACAATT T GGGT GC A A A GGT TT T G T C T AA T AT AAG T . T C . CAACACTCATCAC T C A GTCCT A G T TCATAC ATCA T T C G .
blockSeqs : . . . . . . . . . . . . . . . T T . TAT . . . . . T . . . . . . . . . T . . GTGTGTACAGTA A . . . . CGT GGG . CAA . TGTTCAAATTC . GTA G A AG . . . . T T GGAAC N NN NNNNNNNNNN AGGCA . CCCCCCC CG . . T . . . . . GTCC T T A . T . . . AT C . . T A . . . . . . . GACG . . A G A A . G G . . . . . T . G TC . . C . . CTAA . G AATTAAAA . . T A G CTGGGT ATCCTTTTTTAG C . A . T . . A . T . T G A GN N . NN . T G . . . G . GTG . CAACGTTTTTCG . G AC A T . . . . C C . . CCT . . AGCAGGATTGG . . . T CT T . . . . . . . G C GC GAT TTGGA . ATA AG . . . . G . . AAC . A T A TGT . G . A . . . . . . . . A . . AT . T . . T . . G . GCTT AC ATAAAATACAGATGGAATATGTTAAAACAAATA TATCAT A A T A . T T . C GATCGTTA A G A . . CGT . . . . . . . . . . . . . T C C A . . . . . TATGT . . . . A . . TTTTA GCTC . T C . .
blockSeqs : . . . . . . . . . . . . . . . A T . GT . . . . . . . . . . . . . . . T . . TGGTGTGTCA A . . . . GT AG . CA . CAAACAAATC . TAC A A G . . . . G T NNN N GA ATGTATATAT GTTA . CCCCCCC AA . . T . . . . . GTCT A T A . T . . . A C . . T A . . . . . . . AACA . . A G G A . G G . . . . . A . G C . . C . . CAA . G AATT . . T A G CTGGG TTTTTTTAG C . . . T . . A . . . . . . NN . . . N G . . . G . AA . ATGTA . G AA A . . . . . . C . . . . A . . TAC . A G T A . A . G . . . . TTCATT . A . . . . T . G ACATCCTT G . . . .
blockSeqs : . . . . . . . . . . . . . . . T T . AT . . . . . . . . . . . . . . . T . . GTGTGTGTA A . . . . GT GA . C . TACAAATC . ATA A A A . . . . A T NNN T NN GTAATAATGA TAGG . CACCCCA AA . . A . . . . . G A C A . T . . . C C . . A A . . . . . . . AACA . . A . G . . G A . . . . . T . . T . . C . . TAT . T AAGT . . G . T TCTTG AA C . . . . . . . . . . . G . . . A . A . GGC . C . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . T G . GT . . . . . . . . . . . . . . . T . . GTGTGTAC A . . . . GT GG . C . TACAAATC . AT A A A . . . . T T GAA T G NNNNNNNNNN GGGT . CCTCACC GT . . T . . . . . . . . . . T . . . C . . . A T . . . . . . . GACT . . . . . . . . . . . . . . T . . . . . . . . . . . A . . . . G CTG . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . T . . G . . . . . . . . . . . . . . . . . . TTGTGTA T . . . . GT GG . C . AACGAT . AT A A A . . . . T T NNN N . TGTGATAA NNNN . C GT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ACA . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TTGTA . . . . . G GG . C . TAAAAT . TA G . A . . . . T C
blockSeqs : G . . . TA . TA . . G . . . . . T
blockSeqCons : ** ********** TGTGTGTA******************* *** GT************ GG********* TACGAATC********** ATA** A*** T* CCCCCCC******** ** GT*** ** GACG******** *** TC****** CAA**** AATT********* CTGGG********** ACCTTTTCAG****** **** GTA**** ACGCG****************** AA* G**** AAC **
originalCons : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG---T----T-------GT-A-------CACAT---TG-T---TG-TTG-GT-----------TTGG-----GG----C-GTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AA-AT--CACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGATCACG----CGG---CGGTTT--ATTTGAGTCNTNNAT-ATGATGATAG-GGNA-GTG---ACACCCCCCC--------CCCCCG-AAT-C-GTC--G-AG-A---CCCG-TGGT-G-TTGNGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-G---A-C--A---GAAAAACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC--ATA-AT-ATGGATA-----AATT----TT-CTTTT-TCANTCTTGAATGTGTTGATTT--C-----T--G---TTTTAAA-----TTTTT--AG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--G-T--AATTC---AATATTACACA-CTTCAGGTAATA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATC----A-ATATATT--GTAC--A---TG--------TN-----ACAAC-CGAAA-TTA-AATCTTAAT-AAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTGT-GCCCCCCCCCC-------------TTTTTTTTTT---AATT-----AGCAGGA-AGTTA-ACAA---AGTG-CAG-GA--TGCA-------GGTTA-TAGAAATTATGAATTGAANCC-C---GCATCCAAG--CTCGC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAACGATGC-ACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------CGTATACGTACAT-C-GATA--TATTAT-TTT------GAA--TAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAAG-----T-----G-ACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAG--G--TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TAC----ATT-TCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTTCA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-CGTTA-A----TACAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTNATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-A-AATCACTTAAATTA-----GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TT-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
finalCons : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTGTGTGTGTA-------------------CACAT---TG-T---TG-TTGGT------------TTGGGG---------C-GTAA---C--AAGTTT-CCTACGAATC----------AGG-AAATA--CACTTAAAATGGAA---GG-----CT-GG--TG-ATTT-AAT-GGATCACG----CGG---CGGTTT--ATTTGAGTCNTNNAT-ATGATGATAG-GGNA-GTG---ACACCCCCCC--------CCCCCG-AAT-C-GTC--G-AG-A---CCCG-TGGT---TTGNGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGAT-GGACG--------GAAAAACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCACAA----AT-ATGGATAAATT---------TT-CTTTT-TCANTCTTGAATGTGTTGATTTCTGGG----------TTTTAAAACCTTTTCAG------GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--G-T--AATTC---AATATTACACA-CTTCAGGTAATA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATCGTA----TATATT--GTACACGCG------------------ACAAC-CGAAA-TTA-AATCTTAAT-AAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTGT-GCCCCCCCCCC-------------TTTTTTTTTT---AATT-----AGCAGGA-AGTTA-ACAA---AGTG-CAG-GA--TGCA-------GGTTA-TAGAAATTATGAATTGAANCC-C---GCATCCAAG--CTCGC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAACGATGC-ACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------CGTATACGTACAT-C-GATA--TATTAT-TTT------GAA--TAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAAG-----T-----G-ACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAGG----TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TAC----ATT-TCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTTCA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-CGTTA-A----TACAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTNATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-A-AATCACTTAAATTA-----GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TT-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTCTACTACATAGCCCCCCCCCCCCCCCACACCAATTGAAATTATTTCAGTTGTGGCAAATTAAAGATTTTGTTTTGCAAAATTTAGGAT
Unaligned ( gi|21 ): GGGAGAAATGGACCAGCGAGAGCCCAGTTGGAATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 11111 11111 111 11 1111 2222222222 3333333 111 44444444444444444 11111 111111 1111111111 1111 11 11111 2222222222 11 11111111111 111111 111 111111111111111 11 111 222222 555555555555555555555555 2222222 222 111 111 22222222 22222222 3333333333333 22222 5555555555555555 22222 11 11 111 111 1 111111 1 1111 11 22 77777777777777777777777 11 11 1 11 1 2222 11 22 1 7777777777777 222 555555555555555555555555555555555555555555555555555 1 44444 1 11 11 1 222 222 1 22 0000000000000000000000000 4444444444 5555555555555555 11 1111 888888888888888888888888 1 1 11 2222 22222 11 1 1 1 1 222 1 33333333 222 111 1 2 1 4444444 11 999999999999999999999999999999999999999999999 22222222222 111 333333 1 1 22222222222 111 2222 1 1111111 2222 22 1 1 1 222 11 22 1 22 33333 1111 1 1 1 4444444444444444 1 33333 1 1111111 2222 1 1 1
lowQualScore : 5 5 5 5 5 888 888 5 888 5 0 5 5 5 5 00000 3 5 11111 5 66 5 5 66 333 5 5 5 66 66 66 5 5 11 2222 5 6666666666 0000000 66 888 66 777 5 888 5 777 5 55555555555555555 99999 111111 4 7777777777 3333 4 00 4 0 2 1 7777 11111 4 66 4 66 8 00 6666666666 0 888 00 00000000000 111111 000 888888888888888 666 5 5 1 33 5 5 000 5 888888 3 3 1 77 1 5 77 555555555555555555555555 7777777 4 77 5 888 1 5 5 77 5 5 5 999 333 5 5 5 5 5 6 1 1 111 2 1 77 0 5 5 5 5 1 000 2 22222222 77 6 1 6 6 77777777 6 6 2222222222222 6 6 7 7 2 6 00000 6 9999999999999999 88888 55 99 88 0 11 8 777 444 5 0 0 3 2 3 666666 8 0 22 7777 7 6 6 6 0 6 11 6 88 6 99 99999999999999999999999 8 1 999 33 0 99 0 33 0 1111 22 8 55 0 888 3333333333333 333 555555555555555555555555555555555555555555555555555 3 7 7 1 55555 2 88 0 88 3 333 333 0 3 00 1 6 0000000000000000000000000 0 0000000000 7777777777777777 88 4444 555555555555555555555555 3 3 33 1111 55555 8 8 666 8 5 0 5 4 666 8 0 6 11 0 6 8 8 0 0 0 2 7 7 3 7 333 3 11111111 333 999 6 7 7 7 3 6 3 7777777 11 111111111111111111111111111111111111111111111 11111111111 3 111 444444 3 0 9 66 0 1 88888888888 444 2 3 1111 0 8888888 7 0 8888 55 3 0 3 3 333 88 00 3 7 00 7 88888 1 88 2222 7 3 7 3 3 4444444444444444 7 2 7 33333 7 3 0 7 4444444 0000 3 7 6 3 3
lowQualScore : . . . . . ... ... . ... . . . . . . ..... . . ..... . .. . . .. ... . . . .. .. .. . . .. .... . .......... ....... .. ... .. ... . ... . ... . ................. ..... ...... . .......... .... . .. . . . . .... ..... . .. . .. . .. .......... . ... .. ........... ...... ... ............... ... . . . .. . . ... . ...... . . . .. . . .. ........................ ....... . .. . ... . . . .. . . . ... ... . . . . . . . . ... . . .. . . . . . . ... . ........ .. . . . . ........ . . ............. . . . . . . ..... . ................ ..... .. .. .. . .. . ... ... . . . . . . ...... . . .. .... . . . . . . .. . .. . .. ....................... . . ... .. . .. . .. . .... .. . .. . ... ............. ... ................................................... . . . . ..... . .. . .. . ... ... . . .. . . ......................... . .......... ................ .. .... ........................ . . .. .... ..... . . ... . . . . . ... . . . .. . . . . . . . . . . . . ... . ........ ... ... . . . . . . . ....... .. ............................................. ........... . ... ...... . . . .. . . ........... ... . . .... . ....... . . .... .. . . . . ... .. .. . . .. . ..... . .. .... . . . . . ................ . . . ..... . . . . ....... .... . . . . .
lowQualScore : 0 0 0 0 0 888 888 0 888 0 0 0 0 0 0 99999 1 0 11111 0 99 0 0 99 888 0 0 0 99 99 99 0 0 99 0000 0 9999999999 2222222 99 888 99 111 0 888 0 555 0 00000000000000000 44444 111111 4 9999999999 9999 4 77 4 8 4 8 6666 11111 4 11 4 44 9 77 3333333333 4 000 66 99999999999 000000 000 555555555555555 777 7 7 7 66 7 7 000 7 333333 0 6 4 99 4 7 99 000000000000000000000000 0000000 3 99 7 999 7 7 7 99 7 7 7 666 333 7 7 7 7 0 6 7 5 777 5 0 99 1 7 7 7 7 7 000 5 11111111 99 7 0 7 7 00000000 7 7 8888888888888 7 7 5 3 5 7 88888 7 5555555555555555 33333 88 22 88 8 00 0 000 000 6 8 0 2 5 2 222222 0 0 00 0000 6 7 7 7 7 7 88 7 88 7 22 00000000000000000000000 0 4 444 66 8 88 0 88 0 2222 55 8 55 0 777 3333333333333 333 000000000000000000000000000000000000000000000000000 3 3 3 0 33333 0 33 7 33 3 333 333 7 3 77 0 7 0000000000000000000000000 7 7777777777 0000000000000000 33 0000 777777777777777777777777 3 3 88 2222 22222 0 0 888 0 6 6 6 0 666 0 8 4 00 8 4 0 0 8 0 0 0 3 3 3 3 333 3 00000000 333 000 7 3 3 3 3 7 3 0000000 00 444444444444444444444444444444444444444444444 55555555555 2 000 555555 2 0 8 55 0 0 88888888888 555 5 2 2222 0 3333333 3 7 3333 33 3 7 3 3 333 33 77 3 3 00 3 77777 0 33 0000 3 3 3 3 3 0000000000000000 3 0 3 33333 3 3 7 3 0000000 3333 3 3 7 3 3
consensus : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG----TG-TG--T---G--T-A-CACA-T---TG-T---TG-TTG-----------------GTTTGGGG----CGTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AAA-TAC-ACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAC-GGATCACG----CGG---CGGTTT--ATTTGAGTCNTNNAT-ATGATGATAG-GGNA-GTG---ACACCCCCCC--------CCCCCG-AAT-C-GTC--G-AG-A---CCCG-TGG--T--TTGNGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGATG--GAC--GGA-AAA-ACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC-A---A-AT-ATGGATA-----AATT----TT-CTTTT-TCANTCTTGAATGTGTTGA-TTTCTGG--G-TTTT-AAAA--TTTTTTTAG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--G-T--AATTC---AATATTACACA-CTTCAGGTAATA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATCG-AT-ATATT--GTAC--A----------CG-----C-GACAAC-CGAAA-TTA-AATCTTAAT-AAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTGT-GCCCCCCCCCC-------------TTTTTTTTTT---AATT-----AGCAGGA-AGTTA-ACAA---AGTG-CAG-GA--TGCA-------GGTTA-TAGAAATTATGAATTGAANCC-C---GCATCCAAG--CTCGC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAACGATGC-ACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------CGTATACGTACAT-C-GATA--TATTAT-TTT------GAA--TAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAAG-----T-----G-ACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAG--G--TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TAC----ATT-TCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTTCA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-CGTTA-A----TACAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTNATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-A-AATCACTTAAATTA-----GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TT-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
Reference ( family-1663 ) : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-G--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG----TG-TG--T---G--T-A-CACA-T---TG-T---TG-TTG-----------------GTTTGGGG----CGTAA---C--AAGTTT-CC-T--A--C-GAAT----CAGG-AAA-TAC-ACTTAAAATGGA--A-GG-----CT-GG--TG-ATTT-AAT-GGATCACG----CGG---CGGTTT--ATTTGAGTCNTNNAT-ATGATGATAG-GGNA-GTG---ACACCCCCCC--------CCCCCG-AAT-C-GTC--G-AG-A---CCCG-TGG--T--TTGNGAATGTCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAN--TAACG-GTCCC-T--G-C-ATGGGAAT-GGATG--GAC--GGA-AAA-ACAAAAGAAGT-C-ATGGAATCCAGGGAAAAAG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC-A---A-AT-ATGGATA-----AATT----TT-CTTTT-TCANTCTTGAATGTGTTGA-TTTCTGG--G-TTTT-AAAA--CCTTTTCAG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--G-T--AATTC---AATATTACACA-CTTCAGGTAATA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGNNTG----ATAAATCACTACAGGGTG-AAAG-AACG-CTAC-GAA-TATCGTAT-ATATT--GTAC--A----------CG-----C-GACAAC-CGAAA-TTA-AATCTTAAT-AAT-AATGC--AA-GT----ATTT-CGACAATATTA-TTGT-GCCCCCCCCCC-------------TTTTTTTTTT---AATT-----AGCAGGA-AGTTA-ACAA---AGTG-CAG-GA--TGCA-------GGTTA-TAGAAATTATGAATTGAANCC-C---GCATCCAAG--CTCGC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAACGATGC-ACTA-ATANCATACCCCCCCCCCC----------GTTTTTT-------CGTATACGTACAT-C-GATA--TATTAT-TTT------GAA--TAAGATTTAAAATTTG--TCAATNCTAAAACCTTTTTAGTAGTAAG-----T-----G-ACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAG--G--TGA-AATAT-GGAGCGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCAGTACTTCCC-AGGAATCTGACAGAGCCGAGTGAG--AGGACTCAATCGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGTCGTCAACTCATAAACGTTTATT-ATAGAATT---GA-TAC----ATT-TCCAAAGG---CAT--CGTGACATATGTCTTTGATTATTAA-ATTCTTTCA-CATGTATAC-ACTGTA-GCATG-TGTTATAACTTATAATCAA-A-ACATATG-T-ATG-CGTTA-A----TACAA-ATA--TTT--T-TCAT--TAAATCAC-A-AC-T----TGAAA-TTTTGAAAATTCATA-TTNATCAG-A--TCGTT-TT--AAAGTCAAA----AACAT-TGCAGCGCAA-TAATTTATAGGCGTA----TATTGT-CCATGGGCCT-GTCGT-TTGGCCAAGT-GA---ACTC--AATTTT-ATTTATA-GCCTATAACGA-CTACTGTA--TA-AACANTANTAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTT-ATTAATCATGTTAGTA-GT-GGAAGTTACATACG--ACAC-CATC-A-AATCACTTAAATTA-----GTCTATCAAAAAA-GTCGCTGATGACAAAGTCACTGAAGA-TT-TA-ATGCCNCA-TTTCACGTAGACT-GAAG-AATTCT
gi|1 : AAAC-CA-G-CTA-CCG---T---TT-CCGG---TT-TTTGAATTTTTAG-T-CACGG-TT----TATGGGTG-A--TA-CC--GAAA-A-CGC--TTGATCG---GAT-AGACCGC-TTG--ACGT--A--AA-CA-AAT-TG---TGAATATACTCATATTACCTGTCACTG-TGACT---G--T---CATC-T---TG-TGTCTG-TTGTGTACACATCGTTGTTGGTTTGGGGC---CGTTA---C--AAGTTT-CCTT--A--C-AAAT----CAGG-AAA-TAC-ATTT----T--------------TT-GG--TG-ATTT-AACGGGAANNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNNN-NNA---ACA-----AC--------CCCCCA-AAT-C-ATCTGG-AG-A---CCCGCTGG-----TTGTGAATGTCATTC---TGTTGC--C-TAATAA------------------------TAGACCA------TTACTAAATTAAT--TACCAGACAAAAT--TAACG-GTCCCTT--G-C-ATGGGAAT-GGATG--GACAGAGA-AAA-ACAAAAGAAGA-CAATGGAATCCAAGGAAAAAGGAAGATCTGCATTTCAC--AAAAGATAT-CACATAAATTCAGG-TTAGGCCCTATC---ATCATCGATC------TGTTAA--TGTTTC-CTTCTTT-CGAACGTGA-TTCAC-AT--ATAT-ATGGATA-----AATTAA--AT-CTTTT-TCAATCTTGAATGT-TTGA-TTTGTGG-----TTT-G-------TTTTTAA--A-AGCA-----ACTAAAAT--GGGGTA--CA-TGTAT--GAT--TATTC---AATATTACACA-CTTCAGGTAAGA--GA--GAGAGAGAGACGAGAG-GAGAGACCGAGAGGAGAGAGGCAGAGAGCACTACA-GGTGAAAAG-AATG-CTAC-CAA-TATC---T-ATATT--GTAC--A----------TT-----C--ACAAC-CAAAATTTC-AATCTTAAT-AAT-AATGCGAAG-GT----ATTT-CAA-AATATTATTTGT-G-----CCCCC-------------TTTTTTTTTTATAAATT----------GA-AGTTA-ACAAATTAATG-CAGCAA--TGCAGATGTTGGGTTA-TAGAAATTATAAATTGAAAAC-CATGGCAT-CAAGGACTCAC--CCACCCCATATTAAGA---AATTTTGAG---ACAATGATGC-ACTA-ATAACATA--CCCCCCCCC----------ATTTTTT-------TGTATATGTATATCC-AATA--TATTA--TTT------GAAATTAAGATTTAAAAATTG--TCA--TCTAAAACCTTTTT--TAGTAAG-----TTAAGGG-ATCACTTTCATCCCAA-CACATTCCTTTAACATTTCATTTTTGTGA--CAGA----AAGAAGAGGAG--TGA-AATAT-GGAGCGGAAA-CC-GCTTTTG-TGTCAAGGGTGGCAATATTAAAATCAGTACTTACC-AGGAATCTGACAGGTCCGAGTGAGAAAAGACTCAATC-AGACTGCACA-T--G-ACC-AAAATATGACATCCGCCCGTTGTCAACTCTTAAACGTTTATT-ATAG-ATT---GATTAC----ATTATCCAAAGG---CAT--TGTGACATATGTCTT--GTTATTAA-ATTCCCTTA-AATGTATAC-ACTGTA---ATGTTGTTATA--TTATA--C---A-ACAT----T-A-G-CTTTG-G----T----------TTT--A-TTA---TAAATCAC-A-ACTT----TGAAATTTTTGAAAATTCATA-TCAATTA---------T-TTAAAAAGTAAAA----AACATGTGCAG-GCAA--AATTTATAGGCATA----TATTGT-TCATGGGCCT-GTTGT-TTGGCCAAGT-GA---ACTG--AATTTTCATTTATA-GCCTATAACGACCTACTGTATTTATAACAATAAAAGCAAGAAAACAAACCTTAGGTTCTTTTTATGTTTAATTAATCATGTTAGTA-GTGGGAAGTTACATACGATACAT-CATCAA-AATCATTTAAATTA-----GTCTATC-AAAAA-GTCACTGATGACAAAGTATATGAAGA-TT-CA-AT---TCA-T---A---AAACT-GAAGAAATTCT
gi|10 : aca-CA-GAC-A-CCG---TGTATT-CCGGCGTTTATT-GATTCTT-AG-T-CACGG-TG----TA-GGG-G-G--TA-CCTGGAGA-A-CGC--TT-ATCG---GAT-CGA-CGCTTTT--AAGT--ACTAA-CATAA--TGGGCTGAG-ATA----------CTGT---TG-CA--T---GGAT-A-C-CACT---TA-TGAGTG-CTGC----------------CTTCGGAG----GGTCA---CAAAAGTTC-CC-CGGA--CTGAATATCGCAAG-AAATTAC-ACTTAAAATGGAGGA-GG-----TT-GG--CA-ATTT-AAT-GTATcctgttgtgcatcttggtctatacttgggaatgcagtattggataaagtggtccaatagttcatcatgtatagaaaagggtaacttcagggaaatctgaaatgagtttgaaagtgcattcaa
gi|11 : cgC-CA-G-C-A-CCG---T---TT-CCGG---TT-TC-AAATTTT-AG-T-CACGG-TT----AATGGG-GTA--TA-CC--GAGA-A-CGC--TTGATCA---GTT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--GG---TGAA-ATA----------CTGG---TG-TG--TACAG--T-A-CATA-T---TG-C---TG-TTG-----------------GTTTGGA-----CGTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AAG-TAC-ACTTGAAATGGA--G-GG-----CT-GG--TG-ATTG-AAT-GGATCAC
gi|12 : CATTTTTGTGA--CAGA----AAGAAGAG--GAGTGA-CATAT-GGAGCGAA--------------TTCCAAGGATGGCAATATTAAGATCAGTACTTCCC-AGGAATCTGACAGAGCGAAGTGAG--AGGATTCAATCGAGA-TGCACA-CTGG-ACC-AAAaa
gi|13 : --TTT--TATCAT---AAATCACTATAC-TATCATGAAA-TTATGAAAATTCATG-TTCATCAG-A--TCGTTATT--CAAGTCAGACAATGACAT-TGCAGTACAA-
gi|14 : ttaaattatgaacatagctttgttcaaactgcCACTACAGGGTG-AGAA-AGTGTCTACAGAAGTATC--AT-ATATTAGGTACCAA----------CGTTTTTC-GACAAC-CAAAA-TTA-AATCTTCAT--AT-AATGC--AATGT----ATTTGCAAAAATATCA-TTGT-G
gi|15 : GGGG----CGTAA---C--AAGTTT-CC-T--A--G-AAAT----CA-------------------TGGA--A-GG-----CT-GG--TG-ATTA-AAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNTACGTG---TAACCCCCCC--------CCCCCgc
gi|16 : cAGAGGAG-----TGA-AATAT-GGAGTGGAAACCC-GCCTTTGATGTCAAGGGTGGCAATA------------CTTCCC-AGGAATCTGACAGAGCAGAGTGAG--AAGACTCAATCAAGA-TGCACA-CTc
gi|17 : TG----ATAAATCACTACAGGGTG-AAAG-AACG-TTAC-G-A-TATCGTGTAATATT--
gi|19 : ta--TAACG-GTCCC-T--G-C-ATGGGAAT-GGATG--GAC--GAA-AAA-ACAAAAGAAAT-C-ATGGAATCCAGGAAAcagcttgatccccactgtaactgcaactttttattatcaattcaacgcaattt
gi|2 : ACAAAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTT-AG-T-CACGG-TT----TATGGG-G-A--TAACC--GAAA-A-CGC--TTGATCG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---TGAA-ATA----------CTG----T------T---G--T-A-CACA-T---TG-T---TG-TTG-----------------GTTTGGGG----CGTAA---C--AAGTTT-CC-T--A--C-AAAT----CAGG-AAA-T-C-ACTTAAAATGGA--A-GG-----CT-GG--TG-ATT--AAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNAG-GTTA-CTG---ACACCCCCCC--------CCCCCC-GAT-C-GTC--G-AG-A---CCCG-TA-------TGGGAGTG-CATTC--GTGTTGCTAC-TA--AA------------------------TAGACCA------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGATG---AC--AGA-AAA-ACAAAAGAAGT-A-ATGG--------------G---GATGTGCATTTCAC--AAAAAGTAT-CAC-TAAA-TCAGG-TTAGGCCCTATC---ATCATCGA-C------T-TTAA--TGTTTC-CTTTCTT-CGAACGTGA-TTCAC-A---A-AT-ATTGATA-----AATT----TTTCTTTT-TCA-TCTTGAATGTGTTGA-TTTCTG-----TTTT-AAA---TTTTTTTAG--GCAGCA-----ACTAAAAT--GGGGTA--CA-TGTACACG-T--AATT-------ATTA------TTTA--TACTA--GN--NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNTTTG----ATAAA-CACTACAGGGTG-AAAG-AATG-CTAC--AA-TATCA-AT-ATATT--GTAC--A----------TG-----T-AACAACACGA---TTA-AATCTTAATTAAT-AATGC--AA-GT----ATTT-CGACAATATT--TTGTTGCCCCCCCCCC-------------TTTTTTTTAT---AAT------AGCAGGA---TT----------------G-G--------------GGTTA-TAGAAATTATGAATTGAACCCAT---GCATCCAAG--CTCAC--CCACCCCAT-TTAAGA---AATTTTGAG---ACAATGATGC-ACT--ATATCATACCCCCCCTCCCGAATTGTTGTGTTTTTTGTTTTTGTATATATGTACAT-CAAATATTTATTATGTTTTTTATGAAA--TAAGATTTAAAATTTG--TCAATA-TAAAACCTTTTTAGTAGTAAGGTACAT-----GTACAACTTTCA-ACCAA-CACATTCCTTTAACATTTCATTTTTGTGA--AAGA----AAGAAGA---G--TGA-AATAT-GGAGAGGAAACCC-GCTTTTGATTTCAAGGGTGGCAATATTAAAATCTGTACTTCCC-AGAAATCTGACAGAGCCAAGTGAG--AGGACTCAATTGAGA-TGCACA-CTGG-ACC-AAAATTTGGCATCCGCCCGT-GTCAACTCATAAACGTTTATT-ATAGATTT---GA-TAC----A-T-TCCACAGG---CAT--TGTGAC--ATGTCTTTGATTA-TAA-ATTCTTACATCATGTATAC-ACTGTATACATGATGTAAGAATTTATAATCAAGG-ACATATGTT-ATGTTGTTATATTATTACAACATAGGTTTGCT-TTATCATAAATCAC-A-AC------TGAAA-TTTTGAAAA-TCATATTTCATCAG-ATGTTGCT-TT--AACGTCAAA----AACAT-TGCAGCACAATTAATTTATAAGCATA----TATTGTGCCATGGGCAT-GTTGT-TTGGCCAAGT-GA---ACTC--AATTT---TTTATA-GCCTATAACGA-CTACTGTA--T--AACATTATTTGCAAG-AAACAAACCTTTGGTTCTTTTAATGTGT-ATTAATCATGTTAGTA-GT-GGGAGTTACATA---------TATG-T-AATCA-TTAAATTA-----GTCTATCAAAACA-GTCGCTGATGACAAAGTCACTGAAGATTT-TA-ATATCACATTTTCACGTAGACT-GAAG-AATTCT
gi|20 : C--AAAAGATAT-CAC-CGAA-TCAGG-TTAGGCCTTATC---ATCAT-----------TGTTGA--TTTTt
gi|3 : ----ATAAATCACTA--GGGTG-AACTTAACG-TTAC-GAA-TATCGTGT-A-ATC--ATTC--AGCTTGATCCCCA-----CTGATAAC-TGCAC-TT----TTTTGAT-TATCAATTC--AA-GCGGCAATTT--GACAATATT--TTGT-GCCTCCTCCCCCTCCCCTACGGTTTTTTTTTTTC---AATTGAGTAAGCAAGCTAGTTATATAA---AGTGTCAG-GAATTGCA-------GGTTACTAGAA-TTATGAAT-GAATCC-CT--GCATTCAAG--CCCGCGCCCACCCCTT-TTAAAGCATAATTTTTAGCAAACAACGATTTTACTATATAGCCCCCCCGCCCCCCC----------G-------------CGCCTACTTGCA----GAT---TATTAT-T--------GGA--TAAGATATAGCATTTGGTTCAATGCTAAAAGCTTTTTAG----------------------AATTTTCA-ACTAAACAAATTCGTCTAACAATTCCTTTTTCTGAGACAGATTGAAAGAAAAG--A--TGATAATATTGAAGCTGATACCCTGTTTTTGATTTCAAGGGTGGCAATAGTAGTATCA--ACTTTCCGAGGAA--TGACAGAGCC-AGCGAG--AGG--TCAATCAAGA-TGCACAGCTGGTACCGAAAACTTGGCATGCGGTCCTCGTCAACTCAT-AACG-TTATTCATATAATTATGGA-TACAATTATT-TCGAAAGGTCCCATACCAT-ACATATGTCTTTGATTATTAAGATTCTTTCAGCATGCATGCAACATTA-GC-TT-TGTTTTAACTTAT-ATAAA-ATACAGATG-GAATA-TGTTA-A----AACAA-ATA--TTT--T-TCAT--TAAGAC-C-A-AG-T----GG----TT---AGAAT--AGA-TTGAACAACA--TCCTT-TT--GCA-TC-AA----AGCAC-TGCAGCG----TAATTTA-AGGGGTGGGGTTATTGT----TGGCTCTAGTCGTATTGGCCAAGTAGAGGTACTCTTAATTTT-ATTTATAGGCCTA-AATAA--TAC---A--AA-AACACC-CTAAC---AAAACTACCGTTAGGT--TTATTATGTTT-ATTTATCATA--AGTACAT-GCAAGTTACATACA--ACACTCATC-ACAA--ACTTAA--TAGTCCTGTCTATTAAAAAAGGTCACTAAAGAAATAATCAC-----A-TCATACATGCTCCA-TTTCACGTAGACTGGAAG-AATTC
gi|4 : CAAACGCAAG-C-AACCGGGTT---TT-CCCG---TT-T--GAATTTT--G-TGCACGG-TT----TATGGG-G-GATTA-CC--GAAA-A-CGCCCTTGATCGAGAGAT-AGA-CGC-TTG--ACGTCAA--GA-CA-AA--TG-----GA-ACA----------CTGG---TG-TG--T---G--T-A-CACA-T---CG-T---TG-TTG-----------------GTTTGGGGG---CGTAAGACC--AAGTTTTCC-T--GTTC-AAATT---CAGG-AA--TAC-ACCTAAA-TGGA--A-AGTAGCCCT-GGGCTGGATTT-AACCGGAACACGGGAACGG---TGGATT--ATTTGAGTCTGTGAT-A--ATGATAGAGGCA-GTGTGTACACACCCCA--------AATCTA-AAT-C-G----G-AGGA---CCCA-TGG--T--TGTTGAATGTC-TTC--GTGTTGCTAA-TA--ANNNNNNNNNNNNNNNNNNNNNNNNNTAGACCC------CTACTATAATAAT--TA-CAGACAAAAT--TAACG-GTCCC-T--G-C-ATGGGAAT-GGATG--AAC--AGA-AAA-ACAAAAGAAGT-C-ATGGAATCCAGGAAAAAGG---GATGTGCATTTCAC--AAAAGATAT-CAC-TAAA-TCAGG-TTAGGCCCAATC---ATCATCGATCTGATAATGTTAAATTGTTTC-CTTCTTT-CGAACGTGA-TTCAC-ATATA-ATAATGGATA-----AATTAAAATC-TTTTT-CCAATCTTG-ATGTGTTGATTTTCTGGGTG-TTTT-AAAA---------------AGCAAAT--ACTAAAATA-GGGGTATTCATTGTAT--G-TTAAATTC---AATATTACAcctttgctcctgccccacactaacattcatatttggaatcgccgcacgtccaatacccgctggaccagcaccagagcaatgatctgtagtagaaaagcggaatttcatagaacaacgacctgaaataatcgtgcattcaa
gi|5 : AC-CA-G-C-A-CCG---T---TT-CCGG---TT-TTTGAATTTT-AGAT-CACG----------------------------AAA-ATCGC--TTGATCGT--GAT-AGA-CGC-TTG--ACGT--A--AATCA-AAGTTG----GAA-ATAT---------CTG----TGGTG--T---G--TCA-CACA-TATATG-T---TG-TTGC----------------GTTTGGG-----CGTAA---C--AAGTTT-CC-A--A--C-GA------TAGG-AA--TACCACTTAAAATGGC--A-GG-----CTTGG--TG-ATTTTAAT-GGACTACG-----GGAACCGGTTT--ATTTG-GTCATGTAT-ATATTGATAG-TAGG-GTG---AAACCTCACC-------------GTAGTAC-GTC--GGAG-A---CCC------------------------C--GTGTT-------------------------------------AGACCAGGGTATCTA--ATAATAAT--TA-CAGACAGATA--TA-CG-GTCCC-TTGA-CTATGGGAAT-GGATGTGGACATGTA-AAACACAAAAGAAGTTC-ATGG--------------G---GAT-TGCATTTCACCCAAAAGATATTCAC-TAAA-TCAGG-TTAGGCCCTCTC---ATCATCGATC------TGTATA--CCTTTC-CTT-TTT-CGAACGTGAGTTCACTA---A-AT-ATGGATA-----AAGT----TT-TTTCT-TCATTCTTG-ATGTGTTGA-TTTCTGG--GTTTTT-AAAATCCTTTTTTAG--GCGACAGCTATACTAAAAT--GGGGTA--Ct
gi|6 : atAAAC-CA-G-C-A-CCG---T---TTTCCGG---TT-TT-GAATTTT-AG-T-CACGGTTT----TATGGG-G-G---A-TC--GAAAGA-CGC--TTGA-CG---GAT-AGA-CGC-TTG--ACGT--A--AA-CA-AA--TG---T--A-ATA----------CTG----T--TG--T---G--T-A-CACA-T---CGAT---TGTTTG-----------------GTTTGGGG----CGTAA---CA-AAGTTC-GC-T--A----AAAT-----AGG--AA-TAC-AC-TAAAATGGA--AGGG-----CT-GG--TG-ATTT-AAC-GAACAACG----GAA---CGGTTGAAATTT--GTCGT-AATAATGATAGTAG-GGGT-GTA---ACA------C--------CCCCCA-AAT-C-ATC--G-AG-A---CCCG-TGG-----TTGTGAATGTCATTTCGGTGTTGCTACGTA--AA------------------------TAGACC-------CTA-TATTATAATTATA-CAGACAAATA--TAATGCGTCCC-T--GCC-ATGGGAATGGGATG--AAC----ATAAA-ACAAAAGAAGT-C-G-GGAATCCA-GGAAAAAG---GATGT-CATTTCAC--AACCG-TAT-CAC-GAAA-TCAGGCTTAGGCCC--TC---ATC
gi|7 : C--------CCTTCG-TAT-CTGAG--G-AG-AACCCCTG-TGG--TCCTTGAAAATGTCATAC--GTGATGCTAT-TA--AA------------------------TAG--CAT-----CTACTATAATACT--TA-CAGAAAAAAAAATATCT-GTTCC-T--G-T-----GAAA-GGATG--GAC--TGG-AAA-TCAAAAGAAGC-C-ATGGAATCCGGGGGAAAAG---GATGTACATTTCAC--AAAAGACAT-CAA-CGAA-TCAGG-TTAGGCCCTATCCCTATAATC-AT-------TGTTGA--TGTTTTACTTCTTT-CGAATGTGA-TTCAT-A---T-CT-ATTGATATTGTTTTTT----TT-CTTTT-TCATTCTTGAATGTTTTAT-TTTCTGG--G-TTTTAAAAA--TCTTTTCAGGTGCAGCT-----ACTAAAAT--GTGTT----A-TGT-T--G-T---ATTCTTGAA-ATTACACAGC--CAGGTAATATTGATTGAGAGAGAGA-GAGAGAGAGAGA
gi|8 : tagtaatgatagtaagggtctatacagtaccgatACATAC-CA-G-C-A-CCG---T---TT-CCGG---TT-TT-GAATTTG-AG-T-CACGG-TTGGGGGGGGGG-G-G--TA-CC--GAGA-A-CAC--TTGATTA---GATAAGA-CGC-TTGGAACGT--A--AA-CA-AA--GG---TGAA-ATC----------CTG-----G-TG--T---G--T-ACCACT-T---TG-T---TG--TG-----------------G--TGGGGTTACTGTA-------AAGTTT-TC-CAAA--C-AAAT----CAGGTAAA-TAC-ACTTGAAATGGA--G-GG-----TT-GG--TG-ATTT-GAT-GGATNNNN----NNN---NNNNNN--NNNNNNNNNNNNNNN-NNNNNNNNNN-NNNN-NNN---NNNNNNNNCCAATCCCTACCCCTG-TAT-C-GTCG-G-AG-A---CCTG-TAGTCT--TTGAGAATGCCATTC--GTGTTGCTAC-TA--AA------------------------TAGACCC------CTACTATGATAAT--TA-CAGACAAA
gi|9 : ------TGTTAA--TGTTTC--TTCTTTACAGGAGTGA-TTCA--------AC-AT--ATA-----A--------T-CTTTTGTCAGTCTTGAATGTGTTGA-TTTTCTT--G-TGTT-AAA----------------AGCA-----ACTAAAATGGGGGGTA--CA--GTAT--G-T--ATTTC---AATA-TACACA-CTTCAGGT-ANN--NN--NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN----NNNNNNCATTACA-GGTG-AAAG-AATG-CTAC-AAA-TATC--AT-ATATT--GTAC--G-----------G-----C--ACAAT-CCAAA-TTACAATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTCTACTACATAGCCCCCCCCCCCCCCCACACCAATTGAAATTATTTCAGTTGTGGCAAATTAAAGATTTTGTTTTGCAAAATTTAGGAT
Unaligned ( gi|21 ): GGGAGAAATGGACCAGCGAGAGCCCAGTTGGAATG